Psyllid ID: psy6275
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 391 | ||||||
| 158298455 | 1036 | AGAP009600-PA [Anopheles gambiae str. PE | 0.920 | 0.347 | 0.794 | 1e-169 | |
| 312380113 | 1062 | hypothetical protein AND_07887 [Anophele | 0.920 | 0.338 | 0.784 | 1e-168 | |
| 498938658 | 1029 | PREDICTED: superkiller viralicidic activ | 0.928 | 0.352 | 0.785 | 1e-167 | |
| 194758417 | 1047 | GF14920 [Drosophila ananassae] gi|190615 | 0.910 | 0.340 | 0.795 | 1e-167 | |
| 195050120 | 1067 | GH13429 [Drosophila grimshawi] gi|193899 | 0.897 | 0.328 | 0.800 | 1e-167 | |
| 198473097 | 1057 | GA17990 [Drosophila pseudoobscura pseudo | 0.910 | 0.336 | 0.789 | 1e-167 | |
| 195438088 | 1049 | GK24759 [Drosophila willistoni] gi|19416 | 0.907 | 0.338 | 0.802 | 1e-167 | |
| 195398015 | 1069 | GJ18233 [Drosophila virilis] gi|19414127 | 0.897 | 0.328 | 0.800 | 1e-166 | |
| 195475478 | 1047 | GE21122 [Drosophila yakuba] gi|194176112 | 0.913 | 0.340 | 0.791 | 1e-166 | |
| 512922262 | 1030 | PREDICTED: superkiller viralicidic activ | 0.910 | 0.345 | 0.779 | 1e-166 |
| >gi|158298455|ref|XP_318627.4| AGAP009600-PA [Anopheles gambiae str. PEST] gi|157013889|gb|EAA14456.4| AGAP009600-PA [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
|---|
Score = 602 bits (1551), Expect = e-169, Method: Compositional matrix adjust.
Identities = 290/365 (79%), Positives = 320/365 (87%), Gaps = 5/365 (1%)
Query: 17 MKVIVVETLEACLHEVALPPDLEYQPLAQSKEKPAREYPFVLDPFQKEAILCIENNQSVL 76
+KV +++ EAC HEVA+ PD +Y PLA + KPA+EY FVLDPFQKEAILCIENNQSVL
Sbjct: 91 IKVHTIQSPEACTHEVAVYPDQKYMPLAPATGKPAKEYAFVLDPFQKEAILCIENNQSVL 150
Query: 77 VSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTI 136
VSAHTSAGKTVVAEYAIA SL QRVIYTTPIKALSNQKYREF E+FKDVGL+TGDVTI
Sbjct: 151 VSAHTSAGKTVVAEYAIAKSLADKQRVIYTTPIKALSNQKYREFHEEFKDVGLVTGDVTI 210
Query: 137 NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVR 196
NPS+SCLIMTTEILRNMLYRGSEI REVGWVIFDEIHYMRDKERG VWEETLILL DNV
Sbjct: 211 NPSASCLIMTTEILRNMLYRGSEIMREVGWVIFDEIHYMRDKERGVVWEETLILLPDNVH 270
Query: 197 FVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDD-NKF 255
+VFLSATIPNA QFA+WV HLH QPCHVVYTDYRPTPLQHYLFP GGDGIHL+VD+ +F
Sbjct: 271 YVFLSATIPNARQFAEWVCHLHKQPCHVVYTDYRPTPLQHYLFPAGGDGIHLVVDERGQF 330
Query: 256 KEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKG--GVQTNCFKIVKMIMERNLAPVIVF 313
KE N+ AMNVL AG+AAK GD K GRKGG K +TN FKIVKMIMER+ APVI+F
Sbjct: 331 KEDNFNTAMNVLQTAGEAAK-GDQK-GRKGGLKASNAGETNIFKIVKMIMERSFAPVIIF 388
Query: 314 SFSKKDCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRGI 373
SFSKKDCE+YAMQMAKL+FN + E KLVD+VF+NAMDVL+EEDR+LPQ+EN+LPLLRRGI
Sbjct: 389 SFSKKDCEVYAMQMAKLDFNSSTEKKLVDEVFNNAMDVLTEEDRQLPQVENVLPLLRRGI 448
Query: 374 GIHHG 378
GIHHG
Sbjct: 449 GIHHG 453
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Source: Anopheles gambiae str. PEST Species: Anopheles gambiae Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|312380113|gb|EFR26198.1| hypothetical protein AND_07887 [Anopheles darlingi] | Back alignment and taxonomy information |
|---|
Score = 597 bits (1538), Expect = e-168, Method: Compositional matrix adjust.
Identities = 287/366 (78%), Positives = 320/366 (87%), Gaps = 6/366 (1%)
Query: 17 MKVIVVETLEACLHEVALPPDLEYQPLAQSKEKPAREYPFVLDPFQKEAILCIENNQSVL 76
++V +++ +AC HEVA+ PD +Y PL + PA+EYPFVLDPFQ+EAILCIENNQSVL
Sbjct: 96 IRVHTIQSPDACTHEVAVYPDQDYVPLTAATGPPAKEYPFVLDPFQREAILCIENNQSVL 155
Query: 77 VSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTI 136
VSAHTSAGKTVVAEYAIA SL QRVIYTTPIKALSNQKYREF E+FKDVGL+TGDVTI
Sbjct: 156 VSAHTSAGKTVVAEYAIAKSLADKQRVIYTTPIKALSNQKYREFHEEFKDVGLVTGDVTI 215
Query: 137 NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVR 196
NP++SCLIMTTEILRNMLYRGSEI REVGWVIFDEIHYMRDKERG VWEETLILL DNV
Sbjct: 216 NPTASCLIMTTEILRNMLYRGSEIMREVGWVIFDEIHYMRDKERGVVWEETLILLPDNVH 275
Query: 197 FVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDD-NKF 255
+VFLSATIPNA QFA+WV HLH QPCHVVYTDYRPTPLQHYLFP GGDGIHL+VD+ +F
Sbjct: 276 YVFLSATIPNARQFAEWVCHLHKQPCHVVYTDYRPTPLQHYLFPVGGDGIHLVVDEKGQF 335
Query: 256 KEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKG---GVQTNCFKIVKMIMERNLAPVIV 312
KE N+ AMNVL +AG+AAK GD K GRKGG K +TN FKIVKMIMERN APVI+
Sbjct: 336 KEDNFNTAMNVLQSAGEAAK-GDQK-GRKGGLKATSSSGETNIFKIVKMIMERNFAPVII 393
Query: 313 FSFSKKDCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRG 372
FSFSKKDCE+YAMQMAKL+FN T E KLVD+VF+NAMDVL+EEDR+LPQ+EN+LPLLRRG
Sbjct: 394 FSFSKKDCEVYAMQMAKLDFNSTVEKKLVDEVFNNAMDVLTEEDRQLPQVENVLPLLRRG 453
Query: 373 IGIHHG 378
IGIHHG
Sbjct: 454 IGIHHG 459
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Source: Anopheles darlingi Species: Anopheles darlingi Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|498938658|ref|XP_004520977.1| PREDICTED: superkiller viralicidic activity 2-like 2-like [Ceratitis capitata] | Back alignment and taxonomy information |
|---|
Score = 595 bits (1533), Expect = e-167, Method: Compositional matrix adjust.
Identities = 289/368 (78%), Positives = 319/368 (86%), Gaps = 5/368 (1%)
Query: 14 KACMKVIVVETLEACLHEVALPPDLEYQPLAQSKEKPAREYPFVLDPFQKEAILCIENNQ 73
++ + V V+E+ E+C HEVA+ P EY PL PA+EYPFVLDPFQKEAILCI+N Q
Sbjct: 82 RSRIAVHVIESPESCTHEVAVYPGQEYIPLQPLAGPPAKEYPFVLDPFQKEAILCIDNQQ 141
Query: 74 SVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGD 133
SVLVSAHTSAGKTVVAEYAIA SL QRVIYTTPIKALSNQKYREF E+FKDVGL+TGD
Sbjct: 142 SVLVSAHTSAGKTVVAEYAIAKSLGCKQRVIYTTPIKALSNQKYREFNEEFKDVGLVTGD 201
Query: 134 VTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSD 193
VTINPS+SCLIMTTEILRNMLYRGSEI REVGWVIFDEIHYMRDKERG VWEETLILL D
Sbjct: 202 VTINPSASCLIMTTEILRNMLYRGSEIMREVGWVIFDEIHYMRDKERGVVWEETLILLPD 261
Query: 194 NVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDD- 252
NVR+VFLSATIPNA QFA+WV HLH QPCHVVYTDYRPTPLQHY+FP GGDGIHLIVD+
Sbjct: 262 NVRYVFLSATIPNARQFAEWVCHLHKQPCHVVYTDYRPTPLQHYIFPAGGDGIHLIVDEK 321
Query: 253 NKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKG--GVQTNCFKIVKMIMERNLAPV 310
+FKE N+ AM VL NAGDAAK GD + GRK G +G Q+N FKIVKMIMERN APV
Sbjct: 322 GQFKEDNFTTAMAVLQNAGDAAK-GDQR-GRKTGIRGVDSGQSNIFKIVKMIMERNFAPV 379
Query: 311 IVFSFSKKDCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPLLR 370
I+FSFSKKDCE+YAMQMAKL+FN EE KLVD+VF+NAMDVLSEEDR+LPQ+EN+LPLL+
Sbjct: 380 IIFSFSKKDCEVYAMQMAKLDFNTAEEKKLVDEVFNNAMDVLSEEDRQLPQVENVLPLLK 439
Query: 371 RGIGIHHG 378
RGIGIHHG
Sbjct: 440 RGIGIHHG 447
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Source: Ceratitis capitata Species: Ceratitis capitata Genus: Ceratitis Family: Tephritidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|194758417|ref|XP_001961458.1| GF14920 [Drosophila ananassae] gi|190615155|gb|EDV30679.1| GF14920 [Drosophila ananassae] | Back alignment and taxonomy information |
|---|
Score = 593 bits (1528), Expect = e-167, Method: Compositional matrix adjust.
Identities = 287/361 (79%), Positives = 315/361 (87%), Gaps = 5/361 (1%)
Query: 21 VVETLEACLHEVALPPDLEYQPLAQSKEKPAREYPFVLDPFQKEAILCIENNQSVLVSAH 80
++E+ E+C HEVA PD EY PL PA+EYPFVLDPFQ++AILCI+N+QSVLVSAH
Sbjct: 107 LLESPESCTHEVAAHPDHEYIPLKPFTGVPAKEYPFVLDPFQRQAILCIDNSQSVLVSAH 166
Query: 81 TSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSS 140
TSAGKTVVAEYAIA SL QRVIYTTPIKALSNQK+REF ++FKDVGL+TGDVTINPS+
Sbjct: 167 TSAGKTVVAEYAIAKSLAAKQRVIYTTPIKALSNQKFREFTDEFKDVGLVTGDVTINPSA 226
Query: 141 SCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFL 200
SCLIMTTEILRNMLYRGSEI REVGWVIFDEIHYMRDKERG VWEETLILL DNVR+VFL
Sbjct: 227 SCLIMTTEILRNMLYRGSEIMREVGWVIFDEIHYMRDKERGVVWEETLILLPDNVRYVFL 286
Query: 201 SATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDD-NKFKEHN 259
SATIPNA QFA+WV HLH QPCHVVYTDYRPTPLQHY+FP GGDGIHLIVD+ FKE N
Sbjct: 287 SATIPNARQFAEWVCHLHKQPCHVVYTDYRPTPLQHYIFPAGGDGIHLIVDEKGHFKEDN 346
Query: 260 YQVAMNVLANAGDAAKAGDHKGGRKGGPKG--GVQTNCFKIVKMIMERNLAPVIVFSFSK 317
+ AM VLANAG+AAK GD K RKGG KG QTN FKIVKMIMERN APVI+FSFSK
Sbjct: 347 FSTAMAVLANAGEAAK-GDQK-SRKGGIKGANAGQTNIFKIVKMIMERNFAPVIIFSFSK 404
Query: 318 KDCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRGIGIHH 377
KDCEIYAMQMAKL+FN +E KLVD+VF+NAMDVLS EDR+LPQ+EN+LPLLRRGIGIHH
Sbjct: 405 KDCEIYAMQMAKLDFNTADEKKLVDEVFNNAMDVLSAEDRRLPQVENVLPLLRRGIGIHH 464
Query: 378 G 378
G
Sbjct: 465 G 465
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Source: Drosophila ananassae Species: Drosophila ananassae Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195050120|ref|XP_001992832.1| GH13429 [Drosophila grimshawi] gi|193899891|gb|EDV98757.1| GH13429 [Drosophila grimshawi] | Back alignment and taxonomy information |
|---|
Score = 592 bits (1527), Expect = e-167, Method: Compositional matrix adjust.
Identities = 285/356 (80%), Positives = 313/356 (87%), Gaps = 5/356 (1%)
Query: 26 EACLHEVALPPDLEYQPLAQSKEKPAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGK 85
E+C HEVA PD EY PL PA+EYPFVLDPFQK+AILCI+N+QSVLVSAHTSAGK
Sbjct: 132 ESCTHEVAAHPDQEYIPLQPIVGVPAKEYPFVLDPFQKQAILCIDNSQSVLVSAHTSAGK 191
Query: 86 TVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIM 145
TVVAEYAIA SL QRVIYTTPIKALSNQK+REF ++F+DVGL+TGDVTINPS+SCLIM
Sbjct: 192 TVVAEYAIAKSLAAKQRVIYTTPIKALSNQKFREFTDEFQDVGLVTGDVTINPSASCLIM 251
Query: 146 TTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIP 205
TTEILRNMLYRGSE+ REVGWV+FDEIHYMRDKERG VWEETLILL DNVR+VFLSATIP
Sbjct: 252 TTEILRNMLYRGSEVMREVGWVVFDEIHYMRDKERGVVWEETLILLPDNVRYVFLSATIP 311
Query: 206 NASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDD-NKFKEHNYQVAM 264
NA QFA+WV HLH QPCHVVYTDYRPTPLQHY+FP GGDGIHLIVD+ +FKE N+ AM
Sbjct: 312 NARQFAEWVCHLHKQPCHVVYTDYRPTPLQHYIFPAGGDGIHLIVDEKGQFKEDNFTTAM 371
Query: 265 NVLANAGDAAKAGDHKGGRKGGPKG--GVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEI 322
VLANAG+AAK GD K GRKGG KG QTN FKIVKMIMERN APVI+FSFSKKDCE+
Sbjct: 372 AVLANAGEAAK-GDQK-GRKGGVKGHNSGQTNIFKIVKMIMERNFAPVIIFSFSKKDCEV 429
Query: 323 YAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRGIGIHHG 378
YAMQMAKL+FN +E KLVD+VF NAMDVLSEEDR+LPQ+EN+LPLLRRGIGIHHG
Sbjct: 430 YAMQMAKLDFNTVDEKKLVDEVFHNAMDVLSEEDRRLPQVENVLPLLRRGIGIHHG 485
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Source: Drosophila grimshawi Species: Drosophila grimshawi Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|198473097|ref|XP_001356169.2| GA17990 [Drosophila pseudoobscura pseudoobscura] gi|198139299|gb|EAL33229.2| GA17990 [Drosophila pseudoobscura pseudoobscura] | Back alignment and taxonomy information |
|---|
Score = 592 bits (1527), Expect = e-167, Method: Compositional matrix adjust.
Identities = 285/361 (78%), Positives = 316/361 (87%), Gaps = 5/361 (1%)
Query: 21 VVETLEACLHEVALPPDLEYQPLAQSKEKPAREYPFVLDPFQKEAILCIENNQSVLVSAH 80
++E E+C HEVA PD EY PL PA+EYPFVLDPFQ++AILCI+N+QSVLVSAH
Sbjct: 117 LLEAPESCTHEVAAYPDQEYIPLQPFAGIPAKEYPFVLDPFQRQAILCIDNSQSVLVSAH 176
Query: 81 TSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSS 140
TSAGKTVVAEYAIA SL QRVIYTTPIKALSNQK+REF ++FKDVGL+TGDVTINPS+
Sbjct: 177 TSAGKTVVAEYAIAKSLAAKQRVIYTTPIKALSNQKFREFTDEFKDVGLVTGDVTINPSA 236
Query: 141 SCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFL 200
SCLIMTTEILRNMLYRGSEI REVGWV+FDEIHYMRDKERG VWEETLILL DNVR+VFL
Sbjct: 237 SCLIMTTEILRNMLYRGSEIMREVGWVVFDEIHYMRDKERGVVWEETLILLPDNVRYVFL 296
Query: 201 SATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDD-NKFKEHN 259
SATIPNA QFA+WV HLH QPCHVVYTDYRPTPLQHY+FP GGDGIHLIVD+ +FKE N
Sbjct: 297 SATIPNARQFAEWVCHLHKQPCHVVYTDYRPTPLQHYIFPAGGDGIHLIVDEKGQFKEDN 356
Query: 260 YQVAMNVLANAGDAAKAGDHKGGRKGGPKG--GVQTNCFKIVKMIMERNLAPVIVFSFSK 317
+ AM VLANAG+A K GD K GRKGG KG QTN FKIVKMIMERN APVI+FSFSK
Sbjct: 357 FTTAMAVLANAGEAGK-GDQK-GRKGGIKGHNSGQTNIFKIVKMIMERNFAPVIIFSFSK 414
Query: 318 KDCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRGIGIHH 377
KDCEI+AMQMAKL+FN +E KLVD+VF+NAMDVLS+EDR+LPQ+EN+LPLLRRGIGIHH
Sbjct: 415 KDCEIFAMQMAKLDFNTADEKKLVDEVFNNAMDVLSDEDRRLPQVENVLPLLRRGIGIHH 474
Query: 378 G 378
G
Sbjct: 475 G 475
|
Source: Drosophila pseudoobscura pseudoobscura Species: Drosophila pseudoobscura Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195438088|ref|XP_002066969.1| GK24759 [Drosophila willistoni] gi|194163054|gb|EDW77955.1| GK24759 [Drosophila willistoni] | Back alignment and taxonomy information |
|---|
Score = 592 bits (1527), Expect = e-167, Method: Compositional matrix adjust.
Identities = 289/360 (80%), Positives = 313/360 (86%), Gaps = 5/360 (1%)
Query: 22 VETLEACLHEVALPPDLEYQPLAQSKEKPAREYPFVLDPFQKEAILCIENNQSVLVSAHT 81
+E E+C HEVA PD EY PL PA+EYPFVLDPFQK+AILCI+N+QSVLVSAHT
Sbjct: 110 LEAPESCTHEVAAHPDQEYIPLKPFSGVPAKEYPFVLDPFQKQAILCIDNSQSVLVSAHT 169
Query: 82 SAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSS 141
SAGKTVVAEYAIA SL QRVIYTTPIKALSNQK+REF ++F DVGL+TGDVTINPS+S
Sbjct: 170 SAGKTVVAEYAIAKSLLAKQRVIYTTPIKALSNQKFREFTDEFTDVGLVTGDVTINPSAS 229
Query: 142 CLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLS 201
CLIMTTEILRNMLYRGSEI REVGWVIFDEIHYMRDKERG VWEETLILL DNVR+VFLS
Sbjct: 230 CLIMTTEILRNMLYRGSEIMREVGWVIFDEIHYMRDKERGVVWEETLILLPDNVRYVFLS 289
Query: 202 ATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDD-NKFKEHNY 260
ATIPNA QFA+WV HLH QPCHVVYTDYRPTPLQHY+FP GGDGIHLIVD+ +FKE N+
Sbjct: 290 ATIPNARQFAEWVCHLHKQPCHVVYTDYRPTPLQHYIFPAGGDGIHLIVDEKGQFKEDNF 349
Query: 261 QVAMNVLANAGDAAKAGDHKGGRKGGPKG--GVQTNCFKIVKMIMERNLAPVIVFSFSKK 318
AM VLANAG+AAK GD K GRKGG KG QTN FKIVKMIMERN APVI+FSFSKK
Sbjct: 350 TTAMAVLANAGEAAK-GDQK-GRKGGIKGANAGQTNIFKIVKMIMERNFAPVIIFSFSKK 407
Query: 319 DCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRGIGIHHG 378
DCEIYAMQMAKL+FN EE KLVD+VF NAM+VLSEEDR LPQ+EN+LPLLRRGIGIHHG
Sbjct: 408 DCEIYAMQMAKLDFNTPEEKKLVDEVFYNAMEVLSEEDRTLPQVENVLPLLRRGIGIHHG 467
|
Source: Drosophila willistoni Species: Drosophila willistoni Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195398015|ref|XP_002057620.1| GJ18233 [Drosophila virilis] gi|194141274|gb|EDW57693.1| GJ18233 [Drosophila virilis] | Back alignment and taxonomy information |
|---|
Score = 592 bits (1526), Expect = e-166, Method: Compositional matrix adjust.
Identities = 285/356 (80%), Positives = 314/356 (88%), Gaps = 5/356 (1%)
Query: 26 EACLHEVALPPDLEYQPLAQSKEKPAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGK 85
E+C HEVA PD EY PL PA+EYPFVLDPFQK+AILCI+N+QSVLVSAHTSAGK
Sbjct: 134 ESCTHEVAAHPDQEYIPLQPFTGVPAKEYPFVLDPFQKQAILCIDNSQSVLVSAHTSAGK 193
Query: 86 TVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIM 145
TVVAEYAIA SL QRVIYTTPIKALSNQK+REF ++F+DVGL+TGDVTINPS+SCLIM
Sbjct: 194 TVVAEYAIAKSLAAKQRVIYTTPIKALSNQKFREFTDEFQDVGLVTGDVTINPSASCLIM 253
Query: 146 TTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIP 205
TTEILRNMLYRGSEI REVGWV+FDEIHYMRDKERG VWEETLILL DNVR+VFLSATIP
Sbjct: 254 TTEILRNMLYRGSEIMREVGWVVFDEIHYMRDKERGVVWEETLILLPDNVRYVFLSATIP 313
Query: 206 NASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDD-NKFKEHNYQVAM 264
NA QFA+WV HLH QPCHVVYTDYRPTPLQHY+FP GGDGIHLIVD+ +FKE N+ AM
Sbjct: 314 NARQFAEWVCHLHKQPCHVVYTDYRPTPLQHYIFPAGGDGIHLIVDEKGQFKEDNFTTAM 373
Query: 265 NVLANAGDAAKAGDHKGGRKGGPKG--GVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEI 322
VLANAG+AAK GD K GRKGG KG QTN FKIVKMIMER+ APVI+FSFSKKDCE+
Sbjct: 374 AVLANAGEAAK-GDQK-GRKGGVKGHNSGQTNIFKIVKMIMERHFAPVIIFSFSKKDCEV 431
Query: 323 YAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRGIGIHHG 378
YAMQMAKL+FN +E KLVD+VF+NAMDVLSEEDR+LPQ+EN+LPLLRRGIGIHHG
Sbjct: 432 YAMQMAKLDFNTIDEKKLVDEVFNNAMDVLSEEDRRLPQVENVLPLLRRGIGIHHG 487
|
Source: Drosophila virilis Species: Drosophila virilis Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195475478|ref|XP_002090011.1| GE21122 [Drosophila yakuba] gi|194176112|gb|EDW89723.1| GE21122 [Drosophila yakuba] | Back alignment and taxonomy information |
|---|
Score = 592 bits (1526), Expect = e-166, Method: Compositional matrix adjust.
Identities = 289/365 (79%), Positives = 315/365 (86%), Gaps = 8/365 (2%)
Query: 20 IVVETLEA---CLHEVALPPDLEYQPLAQSKEKPAREYPFVLDPFQKEAILCIENNQSVL 76
IV L+A C HEVA PD EY PL PA+EYPFVLDPFQ++AILCI+N+QSVL
Sbjct: 103 IVTHLLDAPKSCTHEVAAHPDQEYIPLQPFSGVPAKEYPFVLDPFQRQAILCIDNSQSVL 162
Query: 77 VSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTI 136
VSAHTSAGKTVVAEYAIA SL QRVIYTTPIKALSNQK+REF ++FKDVGL+TGDVTI
Sbjct: 163 VSAHTSAGKTVVAEYAIAKSLAAKQRVIYTTPIKALSNQKFREFTDEFKDVGLVTGDVTI 222
Query: 137 NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVR 196
NPS+SCLIMTTEILRNMLYRGSEI REVGWVIFDEIHYMRDKERG VWEETLILL DNVR
Sbjct: 223 NPSASCLIMTTEILRNMLYRGSEIMREVGWVIFDEIHYMRDKERGVVWEETLILLPDNVR 282
Query: 197 FVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDD-NKF 255
+VFLSATIPNA QFA+WV HLH QPCHVVYTDYRPTPLQHY+FP GGDGIHLIVD+ +F
Sbjct: 283 YVFLSATIPNARQFAEWVCHLHKQPCHVVYTDYRPTPLQHYIFPAGGDGIHLIVDEKGQF 342
Query: 256 KEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKG--GVQTNCFKIVKMIMERNLAPVIVF 313
KE N+ AM VLANAG+A K GD K GR GG KG QTN FKIVKMIMERN APVI+F
Sbjct: 343 KEDNFTTAMAVLANAGEAGK-GDQK-GRNGGIKGTNAGQTNIFKIVKMIMERNFAPVIIF 400
Query: 314 SFSKKDCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRGI 373
SFSKKDCEIYAMQMAKL+FN +E KLVD+VF+NAMDVLSEEDR+LPQ+EN+LPLLRRGI
Sbjct: 401 SFSKKDCEIYAMQMAKLDFNTPDEKKLVDEVFNNAMDVLSEEDRRLPQVENVLPLLRRGI 460
Query: 374 GIHHG 378
GIHHG
Sbjct: 461 GIHHG 465
|
Source: Drosophila yakuba Species: Drosophila yakuba Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|512922262|ref|XP_004930077.1| PREDICTED: superkiller viralicidic activity 2-like 2-like [Bombyx mori] | Back alignment and taxonomy information |
|---|
Score = 592 bits (1525), Expect = e-166, Method: Compositional matrix adjust.
Identities = 280/359 (77%), Positives = 311/359 (86%), Gaps = 3/359 (0%)
Query: 21 VVETLEACLHEVALPPDLEYQPLAQSKEKPAREYPFVLDPFQKEAILCIENNQSVLVSAH 80
+ET E C HEVA+PP+ EY PL +P ++Y F+LDPFQKEAILCI+N QSVLVSAH
Sbjct: 86 TLETHEGCTHEVAIPPNQEYAPLLPLTTEPVKQYSFILDPFQKEAILCIDNLQSVLVSAH 145
Query: 81 TSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSS 140
TSAGKTVVAEYAIA SLK QRVIYTTPIKALSNQKYREF E+F DVGLITGDVTINPS+
Sbjct: 146 TSAGKTVVAEYAIALSLKNKQRVIYTTPIKALSNQKYREFSEEFHDVGLITGDVTINPSA 205
Query: 141 SCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFL 200
SCLIMTTEILRNMLYRGSEI REVGWV+FDEIHYMRDKERG VWEETLILL DNV +VFL
Sbjct: 206 SCLIMTTEILRNMLYRGSEIMREVGWVVFDEIHYMRDKERGVVWEETLILLPDNVHYVFL 265
Query: 201 SATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNK-FKEHN 259
SATIPNA QFA+WV LH QPCHV+YT+YRPTPLQHY+FP GGDGIHL+VD+ FKE N
Sbjct: 266 SATIPNARQFAEWVCRLHSQPCHVIYTEYRPTPLQHYIFPAGGDGIHLVVDEKGIFKEDN 325
Query: 260 YQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKD 319
+ AM VL NAG+AAK GD + GR+GGP+ QTN F IVKMIMERN APVI+FSFSKKD
Sbjct: 326 FNTAMTVLNNAGEAAK-GDQR-GRRGGPRDKNQTNIFNIVKMIMERNFAPVIIFSFSKKD 383
Query: 320 CEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRGIGIHHG 378
CE+YA+QMAKL+FN EE KLVD+VFSNAMDVLSEEDRKLPQ+EN++PLLRRGIGIHHG
Sbjct: 384 CELYALQMAKLDFNTIEEKKLVDEVFSNAMDVLSEEDRKLPQVENVIPLLRRGIGIHHG 442
|
Source: Bombyx mori Species: Bombyx mori Genus: Bombyx Family: Bombycidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 391 | ||||||
| FB|FBgn0001986 | 1055 | l(2)35Df "lethal (2) 35Df" [Dr | 0.943 | 0.349 | 0.737 | 5.1e-145 | |
| UNIPROTKB|F1MJX4 | 937 | SKIV2L2 "Uncharacterized prote | 0.915 | 0.382 | 0.683 | 3.7e-135 | |
| UNIPROTKB|G3MYJ7 | 605 | SKIV2L2 "Uncharacterized prote | 0.915 | 0.591 | 0.683 | 3.7e-135 | |
| UNIPROTKB|E2RCI5 | 1042 | SKIV2L2 "Uncharacterized prote | 0.915 | 0.343 | 0.680 | 1.2e-134 | |
| UNIPROTKB|F1SLL6 | 1046 | SKIV2L2 "Uncharacterized prote | 0.915 | 0.342 | 0.680 | 1.2e-134 | |
| UNIPROTKB|P42285 | 1042 | SKIV2L2 "Superkiller viralicid | 0.915 | 0.343 | 0.677 | 3.3e-134 | |
| MGI|MGI:1919448 | 1040 | Skiv2l2 "superkiller viralicid | 0.915 | 0.344 | 0.677 | 3.3e-134 | |
| ZFIN|ZDB-GENE-040426-2854 | 1034 | skiv2l2 "superkiller viralicid | 0.913 | 0.345 | 0.682 | 5.4e-134 | |
| UNIPROTKB|F5H7E2 | 941 | SKIV2L2 "Superkiller viralicid | 0.877 | 0.364 | 0.681 | 2.5e-129 | |
| UNIPROTKB|F1MAH7 | 1046 | F1MAH7 "Uncharacterized protei | 0.915 | 0.342 | 0.639 | 4.3e-125 |
| FB|FBgn0001986 l(2)35Df "lethal (2) 35Df" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1417 (503.9 bits), Expect = 5.1e-145, P = 5.1e-145
Identities = 276/374 (73%), Positives = 306/374 (81%)
Query: 10 ESKTKACMKV-IVVETLEA---CLHEVALPPDLEYQPLAQSKEKPAREYPFVLDPFQKEA 65
+S T ++ IV L+A C HEVA PD EY PL PA+EYPFVLDPFQ++A
Sbjct: 100 DSATLEALRTRIVTHLLDAPKSCTHEVAAHPDQEYIPLKPFSGVPAKEYPFVLDPFQRQA 159
Query: 66 ILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK 125
ILCI+N+QSVLVSAHTSAGKTVVAEYAIA SL QRVIYTTPIKALSNQK+REF ++FK
Sbjct: 160 ILCIDNSQSVLVSAHTSAGKTVVAEYAIAKSLAAKQRVIYTTPIKALSNQKFREFTDEFK 219
Query: 126 DVGLITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWE 185
DVGL+TGDVTINPS+SCLIMTTEILRNMLYRGSEI REVGWV+FDEIHYMRDKERG VWE
Sbjct: 220 DVGLVTGDVTINPSASCLIMTTEILRNMLYRGSEIMREVGWVVFDEIHYMRDKERGVVWE 279
Query: 186 ETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDG 245
ETLILL DNVR+VFLSATIPNA QFA+WV HLH QPCHVVYTDYRPTPLQHY+FP GGDG
Sbjct: 280 ETLILLPDNVRYVFLSATIPNARQFAEWVCHLHKQPCHVVYTDYRPTPLQHYIFPAGGDG 339
Query: 246 IHLIVDDN-KFKEHNYQVAMNVLANXXXXXXXXXXXXXXXXXXXXXVQTNCFKIVKMIME 304
IHLIVD+ +FKE N+ AM VLAN QTN FKIVKMIME
Sbjct: 340 IHLIVDEKGQFKEDNFTTAMAVLANAGEAGKGDQKGRHGGIKGTNAGQTNIFKIVKMIME 399
Query: 305 RNLAPVIVFSFSKKDCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLPQIEN 364
RN APVI+FSFSKKDCEIYAMQMAKL+FN +E KLVD+VF+NAMDVL+EEDR+LPQ+EN
Sbjct: 400 RNFAPVIIFSFSKKDCEIYAMQMAKLDFNTPDEKKLVDEVFNNAMDVLTEEDRRLPQVEN 459
Query: 365 ILPLLRRGIGIHHG 378
+LPLLRRGIGIHHG
Sbjct: 460 VLPLLRRGIGIHHG 473
|
|
| UNIPROTKB|F1MJX4 SKIV2L2 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1324 (471.1 bits), Expect = 3.7e-135, P = 3.7e-135
Identities = 248/363 (68%), Positives = 294/363 (80%)
Query: 17 MKVIVVETLEACLHEVALPPDLEYQPLAQSKEKPAREYPFVLDPFQKEAILCIENNQSVL 76
+KV VET+E C HEVALP D +Y PL K A+EYPF+LD FQ+EAI C++NNQSVL
Sbjct: 97 VKVQSVETVEGCTHEVALPADEDYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVL 156
Query: 77 VSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTI 136
VSAHTSAGKTV AEYAIA +L++ QRVI+T+PIKALSNQKYRE E+F+DVGL+TGDVTI
Sbjct: 157 VSAHTSAGKTVCAEYAIALALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTI 216
Query: 137 NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVR 196
NP++SCL+MTTEILR+MLYRGSE+ REV WVIFDEIHYMRD ERG VWEET+ILL DNV
Sbjct: 217 NPTASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVH 276
Query: 197 FVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDN-KF 255
+VFLSATIPNA QFA+W+ HLH QPCHV+YTDYRPTPLQHY+FP GGDG+HL+VD+N F
Sbjct: 277 YVFLSATIPNARQFAEWICHLHKQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDF 336
Query: 256 KEHNYQVAMNVLANXXXXXXXXXXXXXXXXXXXXXVQTNCFKIVKMIMERNLAPVIVFSF 315
+E N+ AM VL + +N FKIVKMIMERN PVI+FSF
Sbjct: 337 REDNFNTAMQVLRDAGDLAKGDQKGRKGGTKG----PSNVFKIVKMIMERNFQPVIIFSF 392
Query: 316 SKKDCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRGIGI 375
SKKDCE YA+QM KL+FN EE K+V++VFSNA+D LS+ED+KLPQ+EN+LPLL+RGIGI
Sbjct: 393 SKKDCEAYALQMTKLDFNTDEEKKMVEEVFSNAIDCLSDEDKKLPQVENVLPLLKRGIGI 452
Query: 376 HHG 378
HHG
Sbjct: 453 HHG 455
|
|
| UNIPROTKB|G3MYJ7 SKIV2L2 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1324 (471.1 bits), Expect = 3.7e-135, P = 3.7e-135
Identities = 248/363 (68%), Positives = 294/363 (80%)
Query: 17 MKVIVVETLEACLHEVALPPDLEYQPLAQSKEKPAREYPFVLDPFQKEAILCIENNQSVL 76
+KV VET+E C HEVALP D +Y PL K A+EYPF+LD FQ+EAI C++NNQSVL
Sbjct: 97 VKVQSVETVEGCTHEVALPADEDYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVL 156
Query: 77 VSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTI 136
VSAHTSAGKTV AEYAIA +L++ QRVI+T+PIKALSNQKYRE E+F+DVGL+TGDVTI
Sbjct: 157 VSAHTSAGKTVCAEYAIALALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTI 216
Query: 137 NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVR 196
NP++SCL+MTTEILR+MLYRGSE+ REV WVIFDEIHYMRD ERG VWEET+ILL DNV
Sbjct: 217 NPTASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVH 276
Query: 197 FVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDN-KF 255
+VFLSATIPNA QFA+W+ HLH QPCHV+YTDYRPTPLQHY+FP GGDG+HL+VD+N F
Sbjct: 277 YVFLSATIPNARQFAEWICHLHKQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDF 336
Query: 256 KEHNYQVAMNVLANXXXXXXXXXXXXXXXXXXXXXVQTNCFKIVKMIMERNLAPVIVFSF 315
+E N+ AM VL + +N FKIVKMIMERN PVI+FSF
Sbjct: 337 REDNFNTAMQVLRDAGDLAKGDQKGRKGGTKG----PSNVFKIVKMIMERNFQPVIIFSF 392
Query: 316 SKKDCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRGIGI 375
SKKDCE YA+QM KL+FN EE K+V++VFSNA+D LS+ED+KLPQ+EN+LPLL+RGIGI
Sbjct: 393 SKKDCEAYALQMTKLDFNTDEEKKMVEEVFSNAIDCLSDEDKKLPQVENVLPLLKRGIGI 452
Query: 376 HHG 378
HHG
Sbjct: 453 HHG 455
|
|
| UNIPROTKB|E2RCI5 SKIV2L2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1319 (469.4 bits), Expect = 1.2e-134, P = 1.2e-134
Identities = 247/363 (68%), Positives = 294/363 (80%)
Query: 17 MKVIVVETLEACLHEVALPPDLEYQPLAQSKEKPAREYPFVLDPFQKEAILCIENNQSVL 76
+KV VET+E C HEVALP D +Y PL K A+EYPF+LD FQ+EAI C++NNQSVL
Sbjct: 99 VKVQSVETVEGCTHEVALPADEDYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVL 158
Query: 77 VSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTI 136
VSAHTSAGKTV AEYAIA +L++ QRVI+T+PIKALSNQKYRE E+F+DVGL+TGDVTI
Sbjct: 159 VSAHTSAGKTVCAEYAIALALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTI 218
Query: 137 NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVR 196
NP++SCL+MTTEILR+MLYRGSE+ REV WVIFDEIHYMRD ERG VWEET+ILL DNV
Sbjct: 219 NPTASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVH 278
Query: 197 FVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDN-KF 255
+VFLSATIPNA QFA+W+ HLH QPCHV+YTDYRPTPLQHY+FP GGDG+HL+VD+N F
Sbjct: 279 YVFLSATIPNARQFAEWICHLHKQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDF 338
Query: 256 KEHNYQVAMNVLANXXXXXXXXXXXXXXXXXXXXXVQTNCFKIVKMIMERNLAPVIVFSF 315
+E N+ AM VL + +N FKIVKMIMERN PVI+FSF
Sbjct: 339 REDNFNTAMQVLRDAGDLAKGDQKGRKGGTKG----PSNVFKIVKMIMERNFQPVIIFSF 394
Query: 316 SKKDCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRGIGI 375
SKKDCE YA+QM KL+FN EE K+V++VFSNA+D LS+ED+KLPQ+E++LPLL+RGIGI
Sbjct: 395 SKKDCEAYALQMTKLDFNTDEEKKMVEEVFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGI 454
Query: 376 HHG 378
HHG
Sbjct: 455 HHG 457
|
|
| UNIPROTKB|F1SLL6 SKIV2L2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1319 (469.4 bits), Expect = 1.2e-134, P = 1.2e-134
Identities = 247/363 (68%), Positives = 294/363 (80%)
Query: 17 MKVIVVETLEACLHEVALPPDLEYQPLAQSKEKPAREYPFVLDPFQKEAILCIENNQSVL 76
+KV VET+E C HEVALP D +Y PL K A+EYPF+LD FQ+EAI C++NNQSVL
Sbjct: 100 VKVQSVETVEGCTHEVALPADEDYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVL 159
Query: 77 VSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTI 136
VSAHTSAGKTV AEYAIA +L++ QRVI+T+PIKALSNQKYRE E+F+DVGL+TGDVTI
Sbjct: 160 VSAHTSAGKTVCAEYAIALALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTI 219
Query: 137 NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVR 196
NP++SCL+MTTEILR+MLYRGSE+ REV WVIFDEIHYMRD ERG VWEET+ILL DNV
Sbjct: 220 NPTASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVH 279
Query: 197 FVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDN-KF 255
+VFLSATIPNA QFA+W+ HLH QPCHV+YTDYRPTPLQHY+FP GGDG+HL+VD+N F
Sbjct: 280 YVFLSATIPNARQFAEWICHLHKQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDF 339
Query: 256 KEHNYQVAMNVLANXXXXXXXXXXXXXXXXXXXXXVQTNCFKIVKMIMERNLAPVIVFSF 315
+E N+ AM VL + +N FKIVKMIMERN PVI+FSF
Sbjct: 340 REDNFNTAMQVLRDAGDLAKGDQKGRKGGTKG----PSNVFKIVKMIMERNFQPVIIFSF 395
Query: 316 SKKDCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRGIGI 375
SKKDCE YA+QM KL+FN EE K+V++VFSNA+D LS+ED+KLPQ+E++LPLL+RGIGI
Sbjct: 396 SKKDCEAYALQMTKLDFNTDEEKKMVEEVFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGI 455
Query: 376 HHG 378
HHG
Sbjct: 456 HHG 458
|
|
| UNIPROTKB|P42285 SKIV2L2 "Superkiller viralicidic activity 2-like 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1315 (468.0 bits), Expect = 3.3e-134, P = 3.3e-134
Identities = 246/363 (67%), Positives = 294/363 (80%)
Query: 17 MKVIVVETLEACLHEVALPPDLEYQPLAQSKEKPAREYPFVLDPFQKEAILCIENNQSVL 76
+KV VET+E C HEVALP + +Y PL K A+EYPF+LD FQ+EAI C++NNQSVL
Sbjct: 99 VKVQSVETVEGCTHEVALPAEEDYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVL 158
Query: 77 VSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTI 136
VSAHTSAGKTV AEYAIA +L++ QRVI+T+PIKALSNQKYRE E+F+DVGL+TGDVTI
Sbjct: 159 VSAHTSAGKTVCAEYAIALALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTI 218
Query: 137 NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVR 196
NP++SCL+MTTEILR+MLYRGSE+ REV WVIFDEIHYMRD ERG VWEET+ILL DNV
Sbjct: 219 NPTASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVH 278
Query: 197 FVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDN-KF 255
+VFLSATIPNA QFA+W+ HLH QPCHV+YTDYRPTPLQHY+FP GGDG+HL+VD+N F
Sbjct: 279 YVFLSATIPNARQFAEWICHLHKQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDF 338
Query: 256 KEHNYQVAMNVLANXXXXXXXXXXXXXXXXXXXXXVQTNCFKIVKMIMERNLAPVIVFSF 315
+E N+ AM VL + +N FKIVKMIMERN PVI+FSF
Sbjct: 339 REDNFNTAMQVLRDAGDLAKGDQKGRKGGTKG----PSNVFKIVKMIMERNFQPVIIFSF 394
Query: 316 SKKDCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRGIGI 375
SKKDCE YA+QM KL+FN EE K+V++VFSNA+D LS+ED+KLPQ+E++LPLL+RGIGI
Sbjct: 395 SKKDCEAYALQMTKLDFNTDEEKKMVEEVFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGI 454
Query: 376 HHG 378
HHG
Sbjct: 455 HHG 457
|
|
| MGI|MGI:1919448 Skiv2l2 "superkiller viralicidic activity 2-like 2 (S. cerevisiae)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1315 (468.0 bits), Expect = 3.3e-134, P = 3.3e-134
Identities = 246/363 (67%), Positives = 294/363 (80%)
Query: 17 MKVIVVETLEACLHEVALPPDLEYQPLAQSKEKPAREYPFVLDPFQKEAILCIENNQSVL 76
+KV VET+E C HEVALP D +Y PL K A+EYPF+LD FQ+EAI C++NNQSVL
Sbjct: 97 VKVQSVETVEGCTHEVALPADEDYIPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVL 156
Query: 77 VSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTI 136
VSAHTSAGKTV AEYAIA +L++ QRVI+T+PIKALSNQKYRE E+F+DVGL+TGDVTI
Sbjct: 157 VSAHTSAGKTVCAEYAIALALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTI 216
Query: 137 NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVR 196
NP++SCL+MTTEILR+MLYRGSE+ REV WVIFDEIHYMRD ERG VWEET+ILL DNV
Sbjct: 217 NPTASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVH 276
Query: 197 FVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDN-KF 255
+VFLSATIPNA QFA+W+ HLH QPCHV+YTDYRPTPLQHY+FP GGDG+HL+VD+N F
Sbjct: 277 YVFLSATIPNARQFAEWICHLHKQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDF 336
Query: 256 KEHNYQVAMNVLANXXXXXXXXXXXXXXXXXXXXXVQTNCFKIVKMIMERNLAPVIVFSF 315
+E N+ AM VL + +N FKIVKMIMERN PVI+FSF
Sbjct: 337 REDNFNTAMQVLRDAGDLAKGDQKGRKGGTKG----PSNVFKIVKMIMERNFQPVIIFSF 392
Query: 316 SKKDCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRGIGI 375
SKKDCE YA+QM KL+FN EE K+V++VF+NA+D LS+ED+KLPQ+E++LPLL+RGIGI
Sbjct: 393 SKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNAIDCLSDEDKKLPQVEHVLPLLKRGIGI 452
Query: 376 HHG 378
HHG
Sbjct: 453 HHG 455
|
|
| ZFIN|ZDB-GENE-040426-2854 skiv2l2 "superkiller viralicidic activity 2-like 2" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1313 (467.3 bits), Expect = 5.4e-134, P = 5.4e-134
Identities = 245/359 (68%), Positives = 292/359 (81%)
Query: 22 VETLEACLHEVALPPDLEYQPLAQSKEKPAREYPFVLDPFQKEAILCIENNQSVLVSAHT 81
VET+E C HEV LP + EY PL K A+EYPF+LDPFQ+EAILCI+NNQSVLVSAHT
Sbjct: 92 VETVEGCTHEVVLPANEEYTPLKPRVGKAAKEYPFILDPFQREAILCIDNNQSVLVSAHT 151
Query: 82 SAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSS 141
SAGKTV AEYAIA +L++ QRVI+T+PIKALSNQKYRE E+F+DVGL+TGDVTINP++S
Sbjct: 152 SAGKTVCAEYAIALALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTAS 211
Query: 142 CLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLS 201
CL+MTTEILR+MLYRGSE+ REV WVIFDEIHYMRD ERG VWEET+ILL DNV VFLS
Sbjct: 212 CLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHHVFLS 271
Query: 202 ATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDN-KFKEHNY 260
AT+PNA QFA+W+ HLH QPCHVVYTDYRPTPLQHY+FP GGDG+HL+VD+N +F+E N+
Sbjct: 272 ATVPNARQFAEWICHLHKQPCHVVYTDYRPTPLQHYIFPAGGDGLHLVVDENGEFREDNF 331
Query: 261 QVAMNVLANXXXXXXXXXXXXXXXXXXXXXV-QTNCFKIVKMIMERNLAPVIVFSFSKKD 319
AM VL + +N FKIVKMIMERN PVI+FSFSKK+
Sbjct: 332 NTAMQVLRDAGDTGGNTGAKWDPKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKE 391
Query: 320 CEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRGIGIHHG 378
CE YA+Q++KL+FN EE KLV++VF+NA D LS+ED+KLPQ+E++LPLL+RGIGIHHG
Sbjct: 392 CEAYALQVSKLDFNTDEEKKLVEEVFNNATDCLSDEDKKLPQVEHVLPLLKRGIGIHHG 450
|
|
| UNIPROTKB|F5H7E2 SKIV2L2 "Superkiller viralicidic activity 2-like 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1269 (451.8 bits), Expect = 2.5e-129, P = 2.5e-129
Identities = 237/348 (68%), Positives = 283/348 (81%)
Query: 32 VALPPDLEYQPLAQSKEKPAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEY 91
VALP + +Y PL K A+EYPF+LD FQ+EAI C++NNQSVLVSAHTSAGKTV AEY
Sbjct: 13 VALPAEEDYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEY 72
Query: 92 AIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILR 151
AIA +L++ QRVI+T+PIKALSNQKYRE E+F+DVGL+TGDVTINP++SCL+MTTEILR
Sbjct: 73 AIALALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILR 132
Query: 152 NMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNASQFA 211
+MLYRGSE+ REV WVIFDEIHYMRD ERG VWEET+ILL DNV +VFLSATIPNA QFA
Sbjct: 133 SMLYRGSEVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFA 192
Query: 212 QWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDN-KFKEHNYQVAMNVLANX 270
+W+ HLH QPCHV+YTDYRPTPLQHY+FP GGDG+HL+VD+N F+E N+ AM VL +
Sbjct: 193 EWICHLHKQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDA 252
Query: 271 XXXXXXXXXXXXXXXXXXXXVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKL 330
+N FKIVKMIMERN PVI+FSFSKKDCE YA+QM KL
Sbjct: 253 GDLAKGDQKGRKGGTKG----PSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKL 308
Query: 331 NFNETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRGIGIHHG 378
+FN EE K+V++VFSNA+D LS+ED+KLPQ+E++LPLL+RGIGIHHG
Sbjct: 309 DFNTDEEKKMVEEVFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHG 356
|
|
| UNIPROTKB|F1MAH7 F1MAH7 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1229 (437.7 bits), Expect = 4.3e-125, P = 4.3e-125
Identities = 232/363 (63%), Positives = 281/363 (77%)
Query: 17 MKVIVVETLEACLHEVALPPDLEYQPLAQSKEKPAREYPFVLDPFQKEAILCIENNQSVL 76
+KV VET+E C HEV+ P Y P + + +PF F +E + C+ NQSVL
Sbjct: 99 VKVQSVETVEGCTHEVSWPQTHRYPPASPACGTKLPSFPFSYSIFYREMVECLTINQSVL 158
Query: 77 VSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTI 136
VSAHTSAGKTV AEYAIA +L++ QRVI+T+PIKALSNQKYRE E+F+DVGL+TGDVTI
Sbjct: 159 VSAHTSAGKTVCAEYAIALALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTI 218
Query: 137 NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVR 196
NP++SCL+MTTEILR+MLYRGSE+ REV WVIFDEIHYMRD ERG VWEET+ILL DNV
Sbjct: 219 NPTASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVH 278
Query: 197 FVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDN-KF 255
+VFLSATIPNA QFA+W+ HLH QPCHV+YTDYRPTPLQHY+FP GGDG+HL+VD+N F
Sbjct: 279 YVFLSATIPNARQFAEWICHLHKQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDF 338
Query: 256 KEHNYQVAMNVLANXXXXXXXXXXXXXXXXXXXXXVQTNCFKIVKMIMERNLAPVIVFSF 315
+E N+ AM VL + +N FKIVKMIMERN PVI+FSF
Sbjct: 339 REDNFNTAMQVLRDAGDLAKGDQKGRKGGTKG----PSNVFKIVKMIMERNFQPVIIFSF 394
Query: 316 SKKDCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRGIGI 375
SKKDCE YA+QM KL+FN EE K+V++VF+NA+D LS+ED+KLPQ+E++LPLL+RGIGI
Sbjct: 395 SKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNAIDCLSDEDKKLPQVEHVLPLLKRGIGI 454
Query: 376 HHG 378
HHG
Sbjct: 455 HHG 457
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.4 | 0.691 |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 391 | |||
| COG4581 | 1041 | COG4581, COG4581, Superfamily II RNA helicase [DNA | 1e-154 | |
| pfam00270 | 169 | pfam00270, DEAD, DEAD/DEAH box helicase | 5e-35 | |
| smart00487 | 201 | smart00487, DEXDc, DEAD-like helicases superfamily | 1e-32 | |
| COG1204 | 766 | COG1204, COG1204, Superfamily II helicase [General | 7e-32 | |
| PRK01172 | 674 | PRK01172, PRK01172, ski2-like helicase; Provisiona | 8e-25 | |
| cd00046 | 144 | cd00046, DEXDc, DEAD-like helicases superfamily | 2e-23 | |
| PRK00254 | 720 | PRK00254, PRK00254, ski2-like helicase; Provisiona | 2e-19 | |
| PRK02362 | 737 | PRK02362, PRK02362, ski2-like helicase; Provisiona | 4e-19 | |
| COG1202 | 830 | COG1202, COG1202, Superfamily II helicase, archaea | 6e-18 | |
| COG1201 | 814 | COG1201, Lhr, Lhr-like helicases [General function | 6e-14 | |
| TIGR04121 | 803 | TIGR04121, DEXH_lig_assoc, DEXH box helicase, DNA | 6e-11 | |
| PRK13767 | 876 | PRK13767, PRK13767, ATP-dependent helicase; Provis | 3e-10 | |
| COG1205 | 851 | COG1205, COG1205, Distinct helicase family with a | 3e-09 | |
| COG1203 | 733 | COG1203, COG1203, CRISPR-associated helicase Cas3 | 3e-07 | |
| COG1061 | 442 | COG1061, SSL2, DNA or RNA helicases of superfamily | 5e-06 | |
| PRK09751 | 1490 | PRK09751, PRK09751, putative ATP-dependent helicas | 1e-05 | |
| COG1643 | 845 | COG1643, HrpA, HrpA-like helicases [DNA replicatio | 4e-05 | |
| TIGR01970 | 819 | TIGR01970, DEAH_box_HrpB, ATP-dependent helicase H | 1e-04 | |
| cd09639 | 353 | cd09639, Cas3_I, CRISPR/Cas system-associated prot | 1e-04 | |
| TIGR01587 | 358 | TIGR01587, cas3_core, CRISPR-associated helicase C | 2e-04 | |
| COG0513 | 513 | COG0513, SrmB, Superfamily II DNA and RNA helicase | 5e-04 | |
| pfam04851 | 100 | pfam04851, ResIII, Type III restriction enzyme, re | 0.001 | |
| COG1111 | 542 | COG1111, MPH1, ERCC4-like helicases [DNA replicati | 0.002 |
| >gnl|CDD|226947 COG4581, COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 462 bits (1190), Expect = e-154
Identities = 186/387 (48%), Positives = 252/387 (65%), Gaps = 19/387 (4%)
Query: 9 RESKTKACMKVIVVETLEACLHEVALPPDLEYQPLAQSKEK---PAREYPFVLDPFQKEA 65
E ++ + V L +VA+P D + P A+S PAREYPF LDPFQ+EA
Sbjct: 68 SEIESLNVGMRLDVRLSSKELSDVAVPDDYDMVPDAESPFDLAPPAREYPFELDPFQQEA 127
Query: 66 ILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK 125
I +E +SVLV A TS+GKTVVAEYAIA +L+ QRVIYT+PIKALSNQKYR+ +F
Sbjct: 128 IAILERGESVLVCAPTSSGKTVVAEYAIALALRDGQRVIYTSPIKALSNQKYRDLLAKFG 187
Query: 126 DV----GLITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERG 181
DV GL+TGDV+INP + CL+MTTEILRNMLYRGSE R++ WV+FDE+HY+ D+ERG
Sbjct: 188 DVADMVGLMTGDVSINPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERG 247
Query: 182 YVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPN 241
VWEE +ILL D+VRFVFLSAT+PNA +FA+W+ +H QP HVV T++RP PL+H+++
Sbjct: 248 VVWEEVIILLPDHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYV- 306
Query: 242 GGDGIHLIVDDNK-FKEHNYQVAMNVLAN-AGDAAKAGDHKGGRKGGPKGGVQTNC---- 295
G G+ +VD+ K F N+ A L+ + + D GR ++ +
Sbjct: 307 -GKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPA 365
Query: 296 --FKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNETEEVKL-VDDVFSNAMDVL 352
+IV + + NL P IVFSFS++ CE A ++ L+ TEE + + ++ +A+ L
Sbjct: 366 GRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDL 425
Query: 353 SEEDRKLP-QIENILPLLRRGIGIHHG 378
+EEDR+LP QI I LL RGI +HH
Sbjct: 426 AEEDRELPLQILEISALLLRGIAVHHA 452
|
Length = 1041 |
| >gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 5e-35
Identities = 47/162 (29%), Positives = 75/162 (46%), Gaps = 16/162 (9%)
Query: 60 PFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSL---KQSQRVIYTTPIKALSNQK 116
P Q +AI I + + VLV A T +GKT+ I +L K + + P + L+ Q
Sbjct: 2 PIQAQAIPAILSGKDVLVQAPTGSGKTLAFLLPILQALLPKKGGPQALVLAPTRELAEQI 61
Query: 117 YREFEEQFK----DVGLITGDVTINPSSS--------CLIMTTEILRNMLYRGSEIT-RE 163
Y E ++ FK V L+TG ++ + L+ T L ++L RG +
Sbjct: 62 YEELKKLFKILGLRVALLTGGTSLKEQARKLKKGKADILVGTPGRLLDLLRRGKLKLLKN 121
Query: 164 VGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIP 205
+ ++ DE H + D G EE L L + + + LSAT+P
Sbjct: 122 LKLLVLDEAHRLLDMGFGDDLEEILSRLPPDRQILLLSATLP 163
|
Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. Length = 169 |
| >gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 121 bits (304), Expect = 1e-32
Identities = 52/198 (26%), Positives = 83/198 (41%), Gaps = 17/198 (8%)
Query: 55 PFVLDPFQKEAILCI-ENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQ--RVIYTTPIKA 111
L P+QKEAI + + V+++A T +GKT+ A +LK+ + RV+ P +
Sbjct: 6 FEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGGRVLVLVPTRE 65
Query: 112 LSNQKYREFEEQFKD-----VGLITGDVT-------INPSSSCLIMTTEILRNMLYRGSE 159
L+ Q E ++ VGL GD + + L+ T L ++L
Sbjct: 66 LAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDKL 125
Query: 160 ITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHH 219
V VI DE H + D G E+ L LL NV+ + LSAT P + +
Sbjct: 126 SLSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSATPPEEIENLLE--LFLN 183
Query: 220 QPCHVVYTDYRPTPLQHY 237
P + P++ +
Sbjct: 184 DPVFIDVGFTPLEPIEQF 201
|
Length = 201 |
| >gnl|CDD|224125 COG1204, COG1204, Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Score = 127 bits (320), Expect = 7e-32
Identities = 86/324 (26%), Positives = 143/324 (44%), Gaps = 59/324 (18%)
Query: 69 IENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQ-RVIYTTPIKALSNQKYREFE--EQFK 125
+ ++++VL+SA T +GKT++A AI S+L + +V+Y P+KAL+ +KY EF E+
Sbjct: 44 LLSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFSRLEELG 103
Query: 126 D-VGLITGDVTINPS----SSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKER 180
VG+ TGD ++ ++ T E L ++ + EV V+ DEIH + D+ R
Sbjct: 104 IRVGISTGDYDLDDERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTR 163
Query: 181 GYVWEETLI---LLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHY 237
G V E + L++ +R V LSAT+PNA + A W++ +V +D+RP PL+
Sbjct: 164 GPVLESIVARMRRLNELIRIVGLSATLPNAEEVADWLN------AKLVESDWRPVPLRRG 217
Query: 238 LFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFK 297
+ G + D K K ++ LA
Sbjct: 218 VPYVG----AFLGADGKKKTWPL--LIDNLALE--------------------------L 245
Query: 298 IVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDR 357
+++ + V+VF S+K+ A + AK L DD + S
Sbjct: 246 VLESL--AEGGQVLVFVHSRKE----AEKTAK-KLRIKMSATLSDDEKIVLDEGASPILI 298
Query: 358 KLP---QIENILPLLRRGIGIHHG 378
+ E + L+ RG+ HH
Sbjct: 299 PETPTSEDEELAELVLRGVAFHHA 322
|
Length = 766 |
| >gnl|CDD|100801 PRK01172, PRK01172, ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (265), Expect = 8e-25
Identities = 81/334 (24%), Positives = 149/334 (44%), Gaps = 74/334 (22%)
Query: 56 FVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQ 115
F L Q+ AI + ++V+VS T+AGKT++A AI + + IY P+++L+ +
Sbjct: 21 FELYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAGLKSIYIVPLRSLAME 80
Query: 116 KYREFEEQFKDVGL-IT---GDVTINPS----SSCLIMTTEILRNMLYRGSEITREVGWV 167
KY E + + +G+ + GD P +I+T+E ++++ I +VG +
Sbjct: 81 KYEEL-SRLRSLGMRVKISIGDYDDPPDFIKRYDVVILTSEKADSLIHHDPYIINDVGLI 139
Query: 168 IFDEIHYMRDKERGYVWEETLI---LLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHV 224
+ DEIH + D++RG E L ++ + R + LSAT+ NA++ AQW++ +
Sbjct: 140 VADEIHIIGDEDRGPTLETVLSSARYVNPDARILALSATVSNANELAQWLN------ASL 193
Query: 225 VYTDYRPTPLQ-HYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGR 283
+ +++RP PL+ L+ LI+D
Sbjct: 194 IKSNFRPVPLKLGILYRK-----RLILD-------------------------------- 216
Query: 284 KGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNETEEVKLVDD 343
G + V N ++K + V+VF S+K+ E YA + + F E + K+ +
Sbjct: 217 -GYERSQVDIN--SLIKETVNDG-GQVLVFVSSRKNAEDYAEMLIQH-FPEFNDFKVSSE 271
Query: 344 VFSNAMDVLSEEDRKLPQIENILPLLRRGIGIHH 377
+N D +++ +L G+ HH
Sbjct: 272 N-NNVYD------------DSLNEMLPHGVAFHH 292
|
Length = 674 |
| >gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 94.7 bits (236), Expect = 2e-23
Identities = 36/144 (25%), Positives = 66/144 (45%), Gaps = 12/144 (8%)
Query: 73 QSVLVSAHTSAGKTVVAEYAIASSLKQSQ--RVIYTTPIKALSNQKYREFEEQFK---DV 127
+ VL++A T +GKT+ A I L + +V+ P + L+NQ +E F V
Sbjct: 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKV 60
Query: 128 GLITGDVTINPS-------SSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKER 180
G + G +I + ++ T L + L R +++ +I DE H + ++
Sbjct: 61 GYLIGGTSIKQQEKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGF 120
Query: 181 GYVWEETLILLSDNVRFVFLSATI 204
G + + L+ L + + + LSAT
Sbjct: 121 GLLGLKILLKLPKDRQVLLLSATP 144
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. Length = 144 |
| >gnl|CDD|234702 PRK00254, PRK00254, ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Score = 89.9 bits (223), Expect = 2e-19
Identities = 59/194 (30%), Positives = 103/194 (53%), Gaps = 15/194 (7%)
Query: 58 LDPFQKEAILC-IENNQSVLVSAHTSAGKTVVAEYAIASS-LKQSQRVIYTTPIKALSNQ 115
L P Q EA+ + ++++++ T++GKT+VAE + + L++ + +Y P+KAL+ +
Sbjct: 24 LYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKALAEE 83
Query: 116 KYREFEEQFK---DVGLITGDVTINPS----SSCLIMTTEILRNMLYRGSEITREVGWVI 168
KYREF++ K V + TGD +I T E ++L GS ++V V+
Sbjct: 84 KYREFKDWEKLGLRVAMTTGDYDSTDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVV 143
Query: 169 FDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTD 228
DEIH + +RG E L + + + LSAT+ NA + A+W++ +V +D
Sbjct: 144 ADEIHLIGSYDRGATLEMILTHMLGRAQILGLSATVGNAEELAEWLN------AELVVSD 197
Query: 229 YRPTPLQHYLFPNG 242
+RP L+ +F G
Sbjct: 198 WRPVKLRKGVFYQG 211
|
Length = 720 |
| >gnl|CDD|235032 PRK02362, PRK02362, ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Score = 88.9 bits (221), Expect = 4e-19
Identities = 60/213 (28%), Positives = 108/213 (50%), Gaps = 41/213 (19%)
Query: 58 LDPFQKEAILCIE----NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALS 113
L P Q E +E + +++L + T++GKT++AE A+ ++ + + +Y P++AL+
Sbjct: 24 LYPPQAE---AVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIARGGKALYIVPLRALA 80
Query: 114 NQKYREFEEQFKDVGLITGDVTINPSSS--------CLIMTTE----ILRNMLYRGSEIT 161
++K+ EFE F+++G+ G T + S ++ T+E +LRN G+
Sbjct: 81 SEKFEEFER-FEELGVRVGISTGDYDSRDEWLGDNDIIVATSEKVDSLLRN----GAPWL 135
Query: 162 REVGWVIFDEIHYMRDKERGYVWEETLILL---SDNVRFVFLSATIPNASQFAQWVSHLH 218
++ V+ DE+H + RG E TL L + +++ V LSATI NA + A W+
Sbjct: 136 DDITCVVVDEVHLIDSANRGPTLEVTLAKLRRLNPDLQVVALSATIGNADELADWLD--- 192
Query: 219 HQPCHVVYTDYRPTPLQ---HYLFPNGGDGIHL 248
+V +++RP L+ Y G IH
Sbjct: 193 ---AELVDSEWRPIDLREGVFY-----GGAIHF 217
|
Length = 737 |
| >gnl|CDD|224123 COG1202, COG1202, Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
Score = 85.6 bits (212), Expect = 6e-18
Identities = 68/235 (28%), Positives = 111/235 (47%), Gaps = 45/235 (19%)
Query: 29 LHEVALPPDLEYQPLAQSKEKPAREYPFVLDPFQKEAILCIEN------NQSVLVSAHTS 82
+ E+ +P K RE L P Q +L +E N V VSA T+
Sbjct: 196 VDELDIPEKF--------KRMLKREGIEELLPVQ---VLAVEAGLLEGENLLV-VSA-TA 242
Query: 83 AGKTVVAEYA-IASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITG--------- 132
+GKT++ E A I L +++++ P+ AL+NQKY +F+E++ +GL
Sbjct: 243 SGKTLIGELAGIPRLLSGGKKMLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIK 302
Query: 133 ------DVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWE- 185
V +P + ++ T E + +L R + ++G V+ DEIH + D+ERG +
Sbjct: 303 TREEPVVVDTSPDADIIVGTYEGIDYLL-RTGKDLGDIGTVVIDEIHTLEDEERGPRLDG 361
Query: 186 --ETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYL 238
L L +F++LSAT+ N + A L + V+Y D RP PL+ +L
Sbjct: 362 LIGRLRYLFPGAQFIYLSATVGNPEELA---KKLGAKL--VLY-DERPVPLERHL 410
|
Length = 830 |
| >gnl|CDD|224122 COG1201, Lhr, Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 6e-14
Identities = 53/181 (29%), Positives = 88/181 (48%), Gaps = 26/181 (14%)
Query: 60 PFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSL--------KQSQRVIYTTPIKA 111
P Q+ AI I + ++VL+ A T +GKT A + + L + +Y +P+KA
Sbjct: 25 PPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKA 84
Query: 112 LSNQKYREFEEQFKDVGLI----TGDVT--------INPSSSCLIMTTEILRNML--YRG 157
L+N R EE +++G+ GD NP LI T E L +L +
Sbjct: 85 LNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNP-PHILITTPESLAILLNSPKF 143
Query: 158 SEITREVGWVIFDEIHYMRDKERGY---VWEETLILLSDNVRFVFLSATIPNASQFAQWV 214
E+ R+V +VI DEIH + + +RG + E L L+ + + + LSAT+ + A+++
Sbjct: 144 RELLRDVRYVIVDEIHALAESKRGVQLALSLERLRELAGDFQRIGLSATVGPPEEVAKFL 203
Query: 215 S 215
Sbjct: 204 V 204
|
Length = 814 |
| >gnl|CDD|234478 TIGR04121, DEXH_lig_assoc, DEXH box helicase, DNA ligase-associated | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 6e-11
Identities = 51/195 (26%), Positives = 82/195 (42%), Gaps = 34/195 (17%)
Query: 60 PFQKEAILCIENNQSVLVSAHTSAGKT------VVAEYAIASSLKQSQRVIYTTPIKALS 113
PFQ E +S L+ A T +GKT + + A K+ +Y TP++AL+
Sbjct: 16 PFQLEMWAAALEGRSGLLIAPTGSGKTLAGFLPSLIDLAGPEKPKKGLHTLYITPLRALA 75
Query: 114 NQKYREFEEQFKDVGLI------TGDVTINPSS----------SCLIMTTEILRNML-YR 156
R + +++GL TGD SS L+ T E L +L Y
Sbjct: 76 VDIARNLQAPIEELGLPIRVETRTGDT---SSSERARQRKKPPDILLTTPESLALLLSYP 132
Query: 157 GSE-ITREVGWVIFDEIHYMRDKERGYVWEETLIL-----LSDNVRFVFLSATIPNASQF 210
+ + +++ V+ DE H + +RG E L L L+ +R LSATI N +
Sbjct: 133 DAARLFKDLRCVVVDEWHELAGSKRGDQLE--LALARLRRLAPGLRRWGLSATIGNLEEA 190
Query: 211 AQWVSHLHHQPCHVV 225
+ + + P +V
Sbjct: 191 RRVLLGVGGAPAVLV 205
|
Members of this protein family are DEAD/DEAH box helicases found associated with a bacterial ATP-dependent DNA ligase, part of a four-gene system that occurs in about 12 % of prokaryotic reference genomes. The actual motif in this family is DE[VILW]H. Length = 803 |
| >gnl|CDD|237497 PRK13767, PRK13767, ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 3e-10
Identities = 47/156 (30%), Positives = 69/156 (44%), Gaps = 34/156 (21%)
Query: 60 PFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQR---------VIYTTPIK 110
P Q+ AI I ++VL+S+ T +GKT+ A AI L + R +Y +P++
Sbjct: 35 PPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLR 94
Query: 111 ALSNQKYREFEEQFK-----------DVGLI-----TGDVTINPSSS-------CLIMTT 147
AL+N +R EE ++ I TGD + LI T
Sbjct: 95 ALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTP 154
Query: 148 EILRNMLY--RGSEITREVGWVIFDEIHYMRDKERG 181
E L +L + E R V WVI DEIH + + +RG
Sbjct: 155 ESLAILLNSPKFREKLRTVKWVIVDEIHSLAENKRG 190
|
Length = 876 |
| >gnl|CDD|224126 COG1205, COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 3e-09
Identities = 43/184 (23%), Positives = 73/184 (39%), Gaps = 27/184 (14%)
Query: 55 PFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAI-ASSLKQSQ-RVIYTTPIKAL 112
L Q +A+ I ++V+V+ T +GKT I L+ R + P AL
Sbjct: 68 IERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNAL 127
Query: 113 SN---QKYREFEEQFK---DVGLITGDV--------TINPSSSCLIMTTEILRNMLYRGS 158
+N ++ RE G TGD NP L+ ++L +L R
Sbjct: 128 ANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNP-PDILLTNPDMLHYLLLRNH 186
Query: 159 E----ITREVGWVIFDEIHYMRD---KERGYVWEETLILL---SDNVRFVFLSATIPNAS 208
+ + R + +++ DE+H R E + L L ++ + SAT+ N
Sbjct: 187 DAWLWLLRNLKYLVVDELHTYRGVQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPG 246
Query: 209 QFAQ 212
+FA+
Sbjct: 247 EFAE 250
|
Length = 851 |
| >gnl|CDD|224124 COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 3e-07
Identities = 37/186 (19%), Positives = 60/186 (32%), Gaps = 38/186 (20%)
Query: 60 PFQKEAILCIENNQS----VLVSAHTSAGKTVV----AEYAIASSLKQSQRVIYTTPIKA 111
Q++A+ I + V++ A T GKT A + +K RVIY P +
Sbjct: 198 ELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRT 257
Query: 112 LSNQKYREFEEQFKDVGLITGDVTINPSSSCL----IMTTEILRNM-----LYRGSEITR 162
+ YR +E F +I + + L L L +
Sbjct: 258 IIEDMYRRAKEIFGLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVT 317
Query: 163 EVGW--------------------VIFDEIHYMRDKERGYVWEETLILLSDN-VRFVFLS 201
+ VI DE+H D+ L L++ V + +S
Sbjct: 318 PIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADETMLAALLALLEALAEAGVPVLLMS 377
Query: 202 ATIPNA 207
AT+P
Sbjct: 378 ATLPPF 383
|
Length = 733 |
| >gnl|CDD|223989 COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 5e-06
Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 18/129 (13%)
Query: 56 FVLDPFQKEAI----LCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKA 111
F L P+Q+EA+ + ++ T AGKTVVA AIA + + + P K
Sbjct: 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIA---ELKRSTLVLVPTKE 91
Query: 112 LSNQKYREFEEQF---KDVGLITGDVTINPSSSCLIMTTEILRNMLYRGSEI----TREV 164
L +Q ++ ++G+ G + + + T L R + E
Sbjct: 92 LLDQWAEALKKFLLLNDEIGIYGGG-EKELEPAKVTVATV---QTLARRQLLDEFLGNEF 147
Query: 165 GWVIFDEIH 173
G +IFDE+H
Sbjct: 148 GLIIFDEVH 156
|
Length = 442 |
| >gnl|CDD|137505 PRK09751, PRK09751, putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 1e-05
Identities = 52/179 (29%), Positives = 73/179 (40%), Gaps = 41/179 (22%)
Query: 77 VSAHTSAGKTVVA-EYAIASSLKQ------------SQRVIYTTPIKALSNQKYREFEEQ 123
V A T +GKT+ A YA+ ++ + R++Y +PIKAL R +
Sbjct: 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIP 60
Query: 124 FK----------------DVGLITGDVTINPSS-------SCLIMTTEILRNMLY-RGSE 159
K VG+ TGD S LI T E L ML R E
Sbjct: 61 LKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARE 120
Query: 160 ITREVGWVIFDEIHYMRDKERG----YVWEETLILLSDNVRFVFLSATIPNASQFAQWV 214
R V VI DE+H + +RG E LL + + + LSAT+ +AS A ++
Sbjct: 121 TLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSAQRIGLSATVRSASDVAAFL 179
|
Length = 1490 |
| >gnl|CDD|224557 COG1643, HrpA, HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 4e-05
Identities = 46/194 (23%), Positives = 83/194 (42%), Gaps = 29/194 (14%)
Query: 69 IENNQSVLVSAHTSAGKTV-VAEYAIASSLKQSQRVIYTTP--IKALSNQKY--REF-EE 122
IE NQ V++ T +GKT + ++ + L + ++ T P + A S + E E+
Sbjct: 62 IEQNQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEELGEK 121
Query: 123 QFKDVG-LITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKER- 180
+ VG I + ++P + +MT IL + + VI DE H ER
Sbjct: 122 LGETVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPLL-SGYSVVIIDEAH-----ERS 175
Query: 181 -------GYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTP 233
G + + L D+++ + +SAT+ +A +F+ + V+ + R P
Sbjct: 176 LNTDILLGLLKDL-LARRRDDLKLIIMSATL-DAERFSA-----YFGNAPVIEIEGRTYP 228
Query: 234 LQ-HYLFPNGGDGI 246
++ YL D I
Sbjct: 229 VEIRYLPEAEADYI 242
|
Length = 845 |
| >gnl|CDD|233660 TIGR01970, DEAH_box_HrpB, ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 1e-04
Identities = 39/188 (20%), Positives = 71/188 (37%), Gaps = 22/188 (11%)
Query: 69 IENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTP--IKALSNQKY--REFEEQF 124
+ + V++ A AGK+ A+ + ++I P + A S + + E
Sbjct: 14 LAAHPQVVLEAPPGAGKSTAVPLALLDAPGIGGKIIMLEPRRLAARSAAQRLASQLGEAV 73
Query: 125 KD-VGL-ITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGY 182
VG + G+ ++ + ++T IL M+ E+ VG +IFDE H ER
Sbjct: 74 GQTVGYRVRGENKVSRRTRLEVVTEGILTRMIQDDPELDG-VGALIFDEFH-----ERSL 127
Query: 183 VWEETLIL-------LSDNVRFVFLSATIPNA--SQFAQWVSHLHHQ-PCHVVYTDYRPT 232
+ L L L ++++ + +SAT+ S + + V Y P
Sbjct: 128 DADLGLALALDVQSSLREDLKILAMSATLDGERLSSLLPDAPVVESEGRSFPVEIRYLPL 187
Query: 233 PLQHYLFP 240
L
Sbjct: 188 RGDQRLED 195
|
This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing [Unknown function, Enzymes of unknown specificity]. Length = 819 |
| >gnl|CDD|187770 cd09639, Cas3_I, CRISPR/Cas system-associated protein Cas3 | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 1e-04
Identities = 38/166 (22%), Positives = 59/166 (35%), Gaps = 35/166 (21%)
Query: 75 VLVSAHTSAGKTVVAEYAIASSLKQSQ--RVIYTTPIKALSNQKYREFEEQFKDVGLI-- 130
+++ A T GKT A SLK + RVI P +A N YR +E F + GL
Sbjct: 2 LVIEAPTGYGKTEAALLWALHSLKSQKADRVIIALPTRATINAMYRRAKEAFGETGLYHS 61
Query: 131 ---TGDVTINPSSS----CLIMTTEILRNMLYRG----------SEITREVGW------- 166
+ + S + + + E G
Sbjct: 62 SILSSRIKEMGDSEEFEHLFPLYIHSNDTLFLDPITVCTIDQVLKSVFGEFGHYEFTLAS 121
Query: 167 -----VIFDEIHYMRDKERGYVWEETLILLSDN-VRFVFLSATIPN 206
+IFDE+H+ + + L +L DN V + +SAT+P
Sbjct: 122 IANSLLIFDEVHFYDEYTLALI-LAVLEVLKDNDVPILLMSATLPK 166
|
CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; DEAD/DEAH box helicase DNA helicase cas3'; Often but not always is fused to HD nuclease domain; signature gene for Type I. Length = 353 |
| >gnl|CDD|233483 TIGR01587, cas3_core, CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 2e-04
Identities = 38/168 (22%), Positives = 56/168 (33%), Gaps = 38/168 (22%)
Query: 75 VLVSAHTSAGKTVVAEYAIASSLKQSQ---RVIYTTPIKALSNQKYREFEEQFKD--VGL 129
+++ A T GKT A A +SQ RVI P +A N YR +E F L
Sbjct: 2 LVIEAPTGYGKTEAA-LLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGSNLGLL 60
Query: 130 ITGDVTINPSSSCLIMTTEILRNMLYRG------------------SEITREVGW----- 166
+ E L + + E G
Sbjct: 61 HSSSSFKRIKEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTL 120
Query: 167 -------VIFDEIHYMRDKERGYVWEETLILLSDN-VRFVFLSATIPN 206
+IFDE+H+ + + L +L DN V + +SAT+P
Sbjct: 121 ASIANSLLIFDEVHFYDEYTLALI-LAVLEVLKDNDVPILLMSATLPK 167
|
This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model [Mobile and extrachromosomal element functions, Other]. Length = 358 |
| >gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 5e-04
Identities = 39/192 (20%), Positives = 71/192 (36%), Gaps = 37/192 (19%)
Query: 59 DPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIA-------SSLKQSQRVIYTTPIKA 111
P Q AI I + VL A T GKT A + + S ++ + P +
Sbjct: 53 TPIQLAAIPLILAGRDVLGQAQTGTGKT--AAFLLPLLQKILKSVERKYVSALILAPTRE 110
Query: 112 LSNQKYREFEE------QFKDVGLITGDVTINP-----SSSC--LIMTTEILRNMLYRGS 158
L+ Q E + + V ++ G V+I ++ T L +++ RG
Sbjct: 111 LAVQIAEELRKLGKNLGGLR-VAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGK 169
Query: 159 EITREVGWVIFDEIHYMRDK--ERGYVWEETL--IL--LSDNVRFVFLSATIPNASQFAQ 212
V ++ DE D+ + G + + + IL L + + + SAT+P +
Sbjct: 170 LDLSGVETLVLDEA----DRMLDMG--FIDDIEKILKALPPDRQTLLFSATMP--DDIRE 221
Query: 213 WVSHLHHQPCHV 224
+ P +
Sbjct: 222 LARRYLNDPVEI 233
|
Length = 513 |
| >gnl|CDD|218292 pfam04851, ResIII, Type III restriction enzyme, res subunit | Back alignment and domain information |
|---|
Score = 37.6 bits (88), Expect = 0.001
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 16/87 (18%)
Query: 56 FVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKAL--- 112
L P+Q+EAI + + L+ T +GKT+ A IA K ++V++ P K L
Sbjct: 2 LELRPYQEEAIERLLEKKRGLIVMATGSGKTLTAAALIARLAKGKKKVLFVVPRKDLLEQ 61
Query: 113 -------------SNQKYREFEEQFKD 126
+ KYR+ E+FK
Sbjct: 62 ALVIIIDEAHHSSAKTKYRKILEKFKP 88
|
Length = 100 |
| >gnl|CDD|224036 COG1111, MPH1, ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.002
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 11/112 (9%)
Query: 73 QSVLVSAHTSAGKTVVAEYAIASSLKQSQR-VIYTTPIKALSNQKYREFEEQFK----DV 127
++ LV T GKT +A IA+ L+ V++ P K L Q + ++
Sbjct: 30 KNTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEI 89
Query: 128 GLITGDVTINP------SSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIH 173
+TG+V + T +++ N L G +V +IFDE H
Sbjct: 90 AALTGEVRPEEREELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAH 141
|
Length = 542 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 391 | |||
| KOG0948|consensus | 1041 | 100.0 | ||
| KOG0330|consensus | 476 | 100.0 | ||
| KOG0947|consensus | 1248 | 100.0 | ||
| COG4581 | 1041 | Superfamily II RNA helicase [DNA replication, reco | 100.0 | |
| KOG0331|consensus | 519 | 100.0 | ||
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 100.0 | |
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 100.0 | |
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 100.0 | |
| PTZ00110 | 545 | helicase; Provisional | 100.0 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 100.0 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| KOG0343|consensus | 758 | 100.0 | ||
| KOG0338|consensus | 691 | 100.0 | ||
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 100.0 | |
| KOG0328|consensus | 400 | 100.0 | ||
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 100.0 | |
| PRK02362 | 737 | ski2-like helicase; Provisional | 100.0 | |
| KOG0342|consensus | 543 | 100.0 | ||
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| KOG0345|consensus | 567 | 100.0 | ||
| KOG0326|consensus | 459 | 100.0 | ||
| KOG0333|consensus | 673 | 100.0 | ||
| KOG0346|consensus | 569 | 100.0 | ||
| KOG0335|consensus | 482 | 100.0 | ||
| PTZ00424 | 401 | helicase 45; Provisional | 100.0 | |
| PRK00254 | 720 | ski2-like helicase; Provisional | 100.0 | |
| COG1204 | 766 | Superfamily II helicase [General function predicti | 100.0 | |
| KOG0340|consensus | 442 | 100.0 | ||
| PRK01172 | 674 | ski2-like helicase; Provisional | 100.0 | |
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 100.0 | |
| KOG0952|consensus | 1230 | 100.0 | ||
| KOG4284|consensus | 980 | 100.0 | ||
| KOG0332|consensus | 477 | 100.0 | ||
| KOG0348|consensus | 708 | 100.0 | ||
| KOG0336|consensus | 629 | 100.0 | ||
| COG1202 | 830 | Superfamily II helicase, archaea-specific [General | 100.0 | |
| KOG0327|consensus | 397 | 100.0 | ||
| KOG0339|consensus | 731 | 100.0 | ||
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 100.0 | |
| PRK13767 | 876 | ATP-dependent helicase; Provisional | 100.0 | |
| KOG0337|consensus | 529 | 99.98 | ||
| KOG0334|consensus | 997 | 99.97 | ||
| KOG0347|consensus | 731 | 99.97 | ||
| COG1201 | 814 | Lhr Lhr-like helicases [General function predictio | 99.97 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 99.97 | |
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 99.97 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 99.97 | |
| KOG0951|consensus | 1674 | 99.97 | ||
| KOG0341|consensus | 610 | 99.97 | ||
| PRK09401 | 1176 | reverse gyrase; Reviewed | 99.97 | |
| KOG0350|consensus | 620 | 99.97 | ||
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 99.96 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 99.96 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 99.96 | |
| KOG0344|consensus | 593 | 99.96 | ||
| PRK09751 | 1490 | putative ATP-dependent helicase Lhr; Provisional | 99.96 | |
| TIGR02621 | 844 | cas3_GSU0051 CRISPR-associated helicase Cas3, Anae | 99.96 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 99.95 | |
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 99.95 | |
| KOG0329|consensus | 387 | 99.95 | ||
| PHA02558 | 501 | uvsW UvsW helicase; Provisional | 99.95 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 99.95 | |
| cd00268 | 203 | DEADc DEAD-box helicases. A diverse family of prot | 99.95 | |
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 99.94 | |
| PHA02653 | 675 | RNA helicase NPH-II; Provisional | 99.94 | |
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 99.94 | |
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. | 99.94 | |
| COG1205 | 851 | Distinct helicase family with a unique C-terminal | 99.94 | |
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 99.94 | |
| COG0514 | 590 | RecQ Superfamily II DNA helicase [DNA replication, | 99.93 | |
| PF00270 | 169 | DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 | 99.92 | |
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Trans | 99.9 | |
| PRK13766 | 773 | Hef nuclease; Provisional | 99.9 | |
| KOG0349|consensus | 725 | 99.9 | ||
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recomb | 99.9 | |
| TIGR00603 | 732 | rad25 DNA repair helicase rad25. All proteins in t | 99.9 | |
| COG4098 | 441 | comFA Superfamily II DNA/RNA helicase required for | 99.88 | |
| KOG0950|consensus | 1008 | 99.88 | ||
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 99.87 | |
| KOG0354|consensus | 746 | 99.87 | ||
| PRK11131 | 1294 | ATP-dependent RNA helicase HrpA; Provisional | 99.87 | |
| PRK09694 | 878 | helicase Cas3; Provisional | 99.86 | |
| PRK12898 | 656 | secA preprotein translocase subunit SecA; Reviewed | 99.86 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 99.86 | |
| TIGR03714 | 762 | secA2 accessory Sec system translocase SecA2. Memb | 99.85 | |
| PRK09200 | 790 | preprotein translocase subunit SecA; Reviewed | 99.85 | |
| TIGR00963 | 745 | secA preprotein translocase, SecA subunit. The pro | 99.84 | |
| KOG0351|consensus | 941 | 99.84 | ||
| TIGR01967 | 1283 | DEAH_box_HrpA ATP-dependent helicase HrpA. This mo | 99.84 | |
| smart00487 | 201 | DEXDc DEAD-like helicases superfamily. | 99.82 | |
| KOG0352|consensus | 641 | 99.82 | ||
| KOG0949|consensus | 1330 | 99.81 | ||
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 99.81 | |
| PRK13104 | 896 | secA preprotein translocase subunit SecA; Reviewed | 99.81 | |
| PRK11448 | 1123 | hsdR type I restriction enzyme EcoKI subunit R; Pr | 99.8 | |
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, an | 99.8 | |
| KOG0353|consensus | 695 | 99.8 | ||
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 99.79 | |
| PRK12904 | 830 | preprotein translocase subunit SecA; Reviewed | 99.79 | |
| COG4096 | 875 | HsdR Type I site-specific restriction-modification | 99.77 | |
| KOG0951|consensus | 1674 | 99.75 | ||
| KOG0952|consensus | 1230 | 99.75 | ||
| KOG0922|consensus | 674 | 99.75 | ||
| COG1643 | 845 | HrpA HrpA-like helicases [DNA replication, recombi | 99.74 | |
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 99.72 | |
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 99.7 | |
| PRK12899 | 970 | secA preprotein translocase subunit SecA; Reviewed | 99.69 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 99.69 | |
| COG1203 | 733 | CRISPR-associated helicase Cas3 [Defense mechanism | 99.66 | |
| PRK04914 | 956 | ATP-dependent helicase HepA; Validated | 99.66 | |
| PRK13107 | 908 | preprotein translocase subunit SecA; Reviewed | 99.64 | |
| COG1198 | 730 | PriA Primosomal protein N' (replication factor Y) | 99.64 | |
| KOG0926|consensus | 1172 | 99.6 | ||
| PF07652 | 148 | Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR | 99.59 | |
| KOG0920|consensus | 924 | 99.58 | ||
| TIGR00348 | 667 | hsdR type I site-specific deoxyribonuclease, HsdR | 99.58 | |
| KOG1123|consensus | 776 | 99.55 | ||
| KOG0923|consensus | 902 | 99.54 | ||
| PRK12906 | 796 | secA preprotein translocase subunit SecA; Reviewed | 99.53 | |
| KOG0924|consensus | 1042 | 99.52 | ||
| KOG0925|consensus | 699 | 99.44 | ||
| PLN03142 | 1033 | Probable chromatin-remodeling complex ATPase chain | 99.35 | |
| PRK12326 | 764 | preprotein translocase subunit SecA; Reviewed | 99.29 | |
| PRK13103 | 913 | secA preprotein translocase subunit SecA; Reviewed | 99.25 | |
| PRK07246 | 820 | bifunctional ATP-dependent DNA helicase/DNA polyme | 99.24 | |
| PF00176 | 299 | SNF2_N: SNF2 family N-terminal domain; InterPro: I | 99.21 | |
| TIGR03117 | 636 | cas_csf4 CRISPR-associated DEAD/DEAH-box helicase | 99.21 | |
| KOG4150|consensus | 1034 | 99.18 | ||
| COG1199 | 654 | DinG Rad3-related DNA helicases [Transcription / D | 99.17 | |
| PRK08074 | 928 | bifunctional ATP-dependent DNA helicase/DNA polyme | 99.16 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 99.13 | |
| CHL00122 | 870 | secA preprotein translocase subunit SecA; Validate | 99.06 | |
| PRK14873 | 665 | primosome assembly protein PriA; Provisional | 98.99 | |
| PRK12902 | 939 | secA preprotein translocase subunit SecA; Reviewed | 98.99 | |
| COG4889 | 1518 | Predicted helicase [General function prediction on | 98.99 | |
| TIGR02562 | 1110 | cas3_yersinia CRISPR-associated helicase Cas3. The | 98.96 | |
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 98.94 | |
| PRK11747 | 697 | dinG ATP-dependent DNA helicase DinG; Provisional | 98.91 | |
| PRK12903 | 925 | secA preprotein translocase subunit SecA; Reviewed | 98.9 | |
| KOG0385|consensus | 971 | 98.88 | ||
| KOG0387|consensus | 923 | 98.8 | ||
| PF02399 | 824 | Herpes_ori_bp: Origin of replication binding prote | 98.77 | |
| KOG1000|consensus | 689 | 98.74 | ||
| PRK12900 | 1025 | secA preprotein translocase subunit SecA; Reviewed | 98.7 | |
| PRK05298 | 652 | excinuclease ABC subunit B; Provisional | 98.69 | |
| PF13604 | 196 | AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL | 98.68 | |
| smart00488 | 289 | DEXDc2 DEAD-like helicases superfamily. | 98.66 | |
| smart00489 | 289 | DEXDc3 DEAD-like helicases superfamily. | 98.66 | |
| KOG0953|consensus | 700 | 98.59 | ||
| PF07517 | 266 | SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 | 98.57 | |
| KOG1803|consensus | 649 | 98.54 | ||
| PRK15483 | 986 | type III restriction-modification system StyLTI en | 98.5 | |
| KOG0390|consensus | 776 | 98.46 | ||
| TIGR01447 | 586 | recD exodeoxyribonuclease V, alpha subunit. This f | 98.39 | |
| KOG0389|consensus | 941 | 98.38 | ||
| PRK10875 | 615 | recD exonuclease V subunit alpha; Provisional | 98.36 | |
| TIGR01448 | 720 | recD_rel helicase, putative, RecD/TraA family. Thi | 98.35 | |
| PF02562 | 205 | PhoH: PhoH-like protein; InterPro: IPR003714 PhoH | 98.34 | |
| PF09848 | 352 | DUF2075: Uncharacterized conserved protein (DUF207 | 98.31 | |
| PF13245 | 76 | AAA_19: Part of AAA domain | 98.3 | |
| KOG1002|consensus | 791 | 98.29 | ||
| PF13872 | 303 | AAA_34: P-loop containing NTP hydrolase pore-1 | 98.27 | |
| PRK06835 | 329 | DNA replication protein DnaC; Validated | 98.23 | |
| PRK10536 | 262 | hypothetical protein; Provisional | 98.22 | |
| PF13086 | 236 | AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV | 98.19 | |
| COG0610 | 962 | Type I site-specific restriction-modification syst | 98.18 | |
| TIGR02768 | 744 | TraA_Ti Ti-type conjugative transfer relaxase TraA | 98.17 | |
| KOG0384|consensus | 1373 | 98.16 | ||
| KOG4439|consensus | 901 | 98.15 | ||
| KOG1802|consensus | 935 | 98.15 | ||
| PRK13889 | 988 | conjugal transfer relaxase TraA; Provisional | 98.09 | |
| PRK08181 | 269 | transposase; Validated | 98.04 | |
| PRK06526 | 254 | transposase; Provisional | 98.03 | |
| KOG0392|consensus | 1549 | 97.99 | ||
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 97.96 | |
| TIGR00604 | 705 | rad3 DNA repair helicase (rad3). All proteins in t | 97.95 | |
| PF12340 | 229 | DUF3638: Protein of unknown function (DUF3638); In | 97.94 | |
| PRK06921 | 266 | hypothetical protein; Provisional | 97.94 | |
| PRK04296 | 190 | thymidine kinase; Provisional | 97.9 | |
| PF06862 | 442 | DUF1253: Protein of unknown function (DUF1253); In | 97.88 | |
| KOG0921|consensus | 1282 | 97.85 | ||
| PRK13826 | 1102 | Dtr system oriT relaxase; Provisional | 97.85 | |
| TIGR00376 | 637 | DNA helicase, putative. The gene product may repre | 97.8 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 97.8 | |
| KOG1132|consensus | 945 | 97.77 | ||
| COG1484 | 254 | DnaC DNA replication protein [DNA replication, rec | 97.76 | |
| KOG0391|consensus | 1958 | 97.75 | ||
| PRK07952 | 244 | DNA replication protein DnaC; Validated | 97.7 | |
| PRK12377 | 248 | putative replication protein; Provisional | 97.7 | |
| PF00580 | 315 | UvrD-helicase: UvrD/REP helicase N-terminal domain | 97.68 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 97.67 | |
| PF01695 | 178 | IstB_IS21: IstB-like ATP binding protein; InterPro | 97.66 | |
| KOG0386|consensus | 1157 | 97.64 | ||
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 97.61 | |
| PRK08727 | 233 | hypothetical protein; Validated | 97.55 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 97.51 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 97.5 | |
| KOG1805|consensus | 1100 | 97.49 | ||
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 97.48 | |
| PRK08116 | 268 | hypothetical protein; Validated | 97.47 | |
| KOG2340|consensus | 698 | 97.46 | ||
| PRK08903 | 227 | DnaA regulatory inactivator Hda; Validated | 97.45 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.42 | |
| PRK11823 | 446 | DNA repair protein RadA; Provisional | 97.4 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.39 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 97.35 | |
| TIGR02760 | 1960 | TraI_TIGR conjugative transfer relaxase protein Tr | 97.34 | |
| KOG0388|consensus | 1185 | 97.31 | ||
| COG1875 | 436 | NYN ribonuclease and ATPase of PhoH family domains | 97.31 | |
| COG3587 | 985 | Restriction endonuclease [Defense mechanisms] | 97.28 | |
| PRK09183 | 259 | transposase/IS protein; Provisional | 97.28 | |
| PF05970 | 364 | PIF1: PIF1-like helicase; InterPro: IPR010285 This | 97.27 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 97.25 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 97.25 | |
| PHA02533 | 534 | 17 large terminase protein; Provisional | 97.24 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 97.21 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 97.17 | |
| cd01121 | 372 | Sms Sms (bacterial radA) DNA repair protein. This | 97.15 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.14 | |
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 97.14 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 97.13 | |
| PRK08939 | 306 | primosomal protein DnaI; Reviewed | 97.09 | |
| KOG0989|consensus | 346 | 97.07 | ||
| PRK12402 | 337 | replication factor C small subunit 2; Reviewed | 97.04 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 97.01 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 97.01 | |
| PRK14712 | 1623 | conjugal transfer nickase/helicase TraI; Provision | 97.01 | |
| PRK11054 | 684 | helD DNA helicase IV; Provisional | 97.0 | |
| PRK12422 | 445 | chromosomal replication initiation protein; Provis | 96.99 | |
| TIGR00362 | 405 | DnaA chromosomal replication initiator protein Dna | 96.97 | |
| PRK13709 | 1747 | conjugal transfer nickase/helicase TraI; Provision | 96.94 | |
| PRK10919 | 672 | ATP-dependent DNA helicase Rep; Provisional | 96.92 | |
| PRK12901 | 1112 | secA preprotein translocase subunit SecA; Reviewed | 96.91 | |
| PF05127 | 177 | Helicase_RecD: Helicase; InterPro: IPR007807 This | 96.88 | |
| PF06745 | 226 | KaiC: KaiC; InterPro: IPR014774 This entry represe | 96.87 | |
| PRK14087 | 450 | dnaA chromosomal replication initiation protein; P | 96.85 | |
| PRK04195 | 482 | replication factor C large subunit; Provisional | 96.84 | |
| PF13173 | 128 | AAA_14: AAA domain | 96.84 | |
| PRK14086 | 617 | dnaA chromosomal replication initiation protein; P | 96.83 | |
| PHA03333 | 752 | putative ATPase subunit of terminase; Provisional | 96.8 | |
| PRK05986 | 191 | cob(I)alamin adenolsyltransferase/cobinamide ATP-d | 96.78 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 96.78 | |
| PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 96.76 | |
| cd00561 | 159 | CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B | 96.75 | |
| KOG1015|consensus | 1567 | 96.74 | ||
| PHA03368 | 738 | DNA packaging terminase subunit 1; Provisional | 96.74 | |
| COG3421 | 812 | Uncharacterized protein conserved in bacteria [Fun | 96.73 | |
| TIGR03015 | 269 | pepcterm_ATPase putative secretion ATPase, PEP-CTE | 96.72 | |
| TIGR03499 | 282 | FlhF flagellar biosynthetic protein FlhF. | 96.7 | |
| PRK14088 | 440 | dnaA chromosomal replication initiation protein; P | 96.68 | |
| COG1435 | 201 | Tdk Thymidine kinase [Nucleotide transport and met | 96.65 | |
| TIGR01075 | 715 | uvrD DNA helicase II. Designed to identify uvrD me | 96.65 | |
| PRK11773 | 721 | uvrD DNA-dependent helicase II; Provisional | 96.65 | |
| COG2256 | 436 | MGS1 ATPase related to the helicase subunit of the | 96.63 | |
| PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 96.61 | |
| TIGR01074 | 664 | rep ATP-dependent DNA helicase Rep. Designed to id | 96.61 | |
| TIGR02760 | 1960 | TraI_TIGR conjugative transfer relaxase protein Tr | 96.6 | |
| COG1444 | 758 | Predicted P-loop ATPase fused to an acetyltransfer | 96.6 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 96.55 | |
| PTZ00112 | 1164 | origin recognition complex 1 protein; Provisional | 96.54 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 96.54 | |
| TIGR00416 | 454 | sms DNA repair protein RadA. The gene protuct code | 96.53 | |
| PRK05973 | 237 | replicative DNA helicase; Provisional | 96.52 | |
| PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Valida | 96.52 | |
| PF05496 | 233 | RuvB_N: Holliday junction DNA helicase ruvB N-term | 96.51 | |
| PHA02544 | 316 | 44 clamp loader, small subunit; Provisional | 96.49 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 96.45 | |
| PF03354 | 477 | Terminase_1: Phage Terminase ; InterPro: IPR005021 | 96.45 | |
| COG1474 | 366 | CDC6 Cdc6-related protein, AAA superfamily ATPase | 96.43 | |
| PLN03025 | 319 | replication factor C subunit; Provisional | 96.39 | |
| KOG1133|consensus | 821 | 96.37 | ||
| cd00079 | 131 | HELICc Helicase superfamily c-terminal domain; ass | 96.37 | |
| KOG0991|consensus | 333 | 96.37 | ||
| PRK13833 | 323 | conjugal transfer protein TrbB; Provisional | 96.34 | |
| COG0553 | 866 | HepA Superfamily II DNA/RNA helicases, SNF2 family | 96.34 | |
| TIGR01073 | 726 | pcrA ATP-dependent DNA helicase PcrA. Designed to | 96.31 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 96.29 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 96.26 | |
| COG4962 | 355 | CpaF Flp pilus assembly protein, ATPase CpaF [Intr | 96.24 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 96.2 | |
| TIGR03881 | 229 | KaiC_arch_4 KaiC domain protein, PAE1156 family. M | 96.18 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 96.14 | |
| cd00984 | 242 | DnaB_C DnaB helicase C terminal domain. The hexame | 96.14 | |
| TIGR02782 | 299 | TrbB_P P-type conjugative transfer ATPase TrbB. Th | 96.14 | |
| PRK13894 | 319 | conjugal transfer ATPase TrbB; Provisional | 96.13 | |
| PTZ00293 | 211 | thymidine kinase; Provisional | 96.12 | |
| KOG1131|consensus | 755 | 96.09 | ||
| COG2804 | 500 | PulE Type II secretory pathway, ATPase PulE/Tfp pi | 96.07 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 96.05 | |
| TIGR00708 | 173 | cobA cob(I)alamin adenosyltransferase. Alternate n | 96.01 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 96.01 | |
| TIGR02928 | 365 | orc1/cdc6 family replication initiation protein. M | 95.98 | |
| PRK13851 | 344 | type IV secretion system protein VirB11; Provision | 95.98 | |
| PRK13341 | 725 | recombination factor protein RarA/unknown domain f | 95.96 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 95.95 | |
| KOG2028|consensus | 554 | 95.95 | ||
| PRK05707 | 328 | DNA polymerase III subunit delta'; Validated | 95.95 | |
| cd01122 | 271 | GP4d_helicase GP4d_helicase is a homohexameric 5'- | 95.9 | |
| CHL00181 | 287 | cbbX CbbX; Provisional | 95.89 | |
| COG0593 | 408 | DnaA ATPase involved in DNA replication initiation | 95.87 | |
| TIGR02785 | 1232 | addA_Gpos recombination helicase AddA, Firmicutes | 95.85 | |
| TIGR02881 | 261 | spore_V_K stage V sporulation protein K. Members o | 95.83 | |
| PRK13342 | 413 | recombination factor protein RarA; Reviewed | 95.82 | |
| TIGR02012 | 321 | tigrfam_recA protein RecA. This model describes or | 95.82 | |
| PF05729 | 166 | NACHT: NACHT domain | 95.81 | |
| COG4626 | 546 | Phage terminase-like protein, large subunit [Gener | 95.79 | |
| TIGR01547 | 396 | phage_term_2 phage terminase, large subunit, PBSX | 95.77 | |
| COG0470 | 325 | HolB ATPase involved in DNA replication [DNA repli | 95.76 | |
| PRK07003 | 830 | DNA polymerase III subunits gamma and tau; Validat | 95.75 | |
| PRK14956 | 484 | DNA polymerase III subunits gamma and tau; Provisi | 95.75 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 95.72 | |
| PRK07414 | 178 | cob(I)yrinic acid a,c-diamide adenosyltransferase; | 95.72 | |
| PRK09112 | 351 | DNA polymerase III subunit delta'; Validated | 95.71 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 95.69 | |
| PRK06620 | 214 | hypothetical protein; Validated | 95.63 | |
| TIGR02688 | 449 | conserved hypothetical protein TIGR02688. Members | 95.62 | |
| PF13177 | 162 | DNA_pol3_delta2: DNA polymerase III, delta subunit | 95.61 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 95.61 | |
| PRK08691 | 709 | DNA polymerase III subunits gamma and tau; Validat | 95.57 | |
| PRK14958 | 509 | DNA polymerase III subunits gamma and tau; Provisi | 95.57 | |
| COG0467 | 260 | RAD55 RecA-superfamily ATPases implicated in signa | 95.55 | |
| PRK08769 | 319 | DNA polymerase III subunit delta'; Validated | 95.52 | |
| PRK13900 | 332 | type IV secretion system ATPase VirB11; Provisiona | 95.52 | |
| PRK07994 | 647 | DNA polymerase III subunits gamma and tau; Validat | 95.5 | |
| PF01443 | 234 | Viral_helicase1: Viral (Superfamily 1) RNA helicas | 95.46 | |
| TIGR03877 | 237 | thermo_KaiC_1 KaiC domain protein, Ph0284 family. | 95.45 | |
| TIGR02880 | 284 | cbbX_cfxQ probable Rubsico expression protein CbbX | 95.44 | |
| COG2109 | 198 | BtuR ATP:corrinoid adenosyltransferase [Coenzyme m | 95.44 | |
| COG0653 | 822 | SecA Preprotein translocase subunit SecA (ATPase, | 95.41 | |
| PF00265 | 176 | TK: Thymidine kinase; InterPro: IPR001267 Thymidin | 95.39 | |
| PRK09354 | 349 | recA recombinase A; Provisional | 95.38 | |
| COG0466 | 782 | Lon ATP-dependent Lon protease, bacterial type [Po | 95.36 | |
| COG1066 | 456 | Sms Predicted ATP-dependent serine protease [Postt | 95.35 | |
| PRK14949 | 944 | DNA polymerase III subunits gamma and tau; Provisi | 95.33 | |
| PF12846 | 304 | AAA_10: AAA-like domain | 95.33 | |
| PRK14960 | 702 | DNA polymerase III subunits gamma and tau; Provisi | 95.3 | |
| KOG0058|consensus | 716 | 95.3 | ||
| PHA00729 | 226 | NTP-binding motif containing protein | 95.25 | |
| PF03796 | 259 | DnaB_C: DnaB-like helicase C terminal domain; Inte | 95.23 | |
| PRK14963 | 504 | DNA polymerase III subunits gamma and tau; Provisi | 95.23 | |
| KOG2228|consensus | 408 | 95.22 | ||
| PRK14962 | 472 | DNA polymerase III subunits gamma and tau; Provisi | 95.2 | |
| PRK12323 | 700 | DNA polymerase III subunits gamma and tau; Provisi | 95.2 | |
| COG3973 | 747 | Superfamily I DNA and RNA helicases [General funct | 95.18 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 95.17 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 95.17 | |
| PRK14961 | 363 | DNA polymerase III subunits gamma and tau; Provisi | 95.16 | |
| PF01637 | 234 | Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 | 95.14 | |
| PF00437 | 270 | T2SE: Type II/IV secretion system protein; InterPr | 95.13 | |
| PRK09087 | 226 | hypothetical protein; Validated | 95.11 | |
| PRK10436 | 462 | hypothetical protein; Provisional | 95.06 | |
| cd01129 | 264 | PulE-GspE PulE/GspE The type II secretory pathway | 95.04 | |
| PRK09361 | 225 | radB DNA repair and recombination protein RadB; Pr | 95.03 | |
| PHA00350 | 399 | putative assembly protein | 95.01 | |
| COG2255 | 332 | RuvB Holliday junction resolvasome, helicase subun | 94.99 | |
| cd01393 | 226 | recA_like RecA is a bacterial enzyme which has rol | 94.98 | |
| TIGR00767 | 415 | rho transcription termination factor Rho. Members | 94.98 | |
| PRK07471 | 365 | DNA polymerase III subunit delta'; Validated | 94.95 | |
| PRK05896 | 605 | DNA polymerase III subunits gamma and tau; Validat | 94.93 | |
| PRK13531 | 498 | regulatory ATPase RavA; Provisional | 94.87 | |
| PRK00440 | 319 | rfc replication factor C small subunit; Reviewed | 94.86 | |
| PRK09111 | 598 | DNA polymerase III subunits gamma and tau; Validat | 94.83 | |
| PRK14964 | 491 | DNA polymerase III subunits gamma and tau; Provisi | 94.8 | |
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 94.79 | |
| PRK11331 | 459 | 5-methylcytosine-specific restriction enzyme subun | 94.78 | |
| PF02534 | 469 | T4SS-DNA_transf: Type IV secretory system Conjugat | 94.77 | |
| PRK14952 | 584 | DNA polymerase III subunits gamma and tau; Provisi | 94.76 | |
| PRK14957 | 546 | DNA polymerase III subunits gamma and tau; Provisi | 94.74 | |
| PF05876 | 557 | Terminase_GpA: Phage terminase large subunit (GpA) | 94.71 | |
| PRK07764 | 824 | DNA polymerase III subunits gamma and tau; Validat | 94.7 | |
| KOG0739|consensus | 439 | 94.69 | ||
| PRK08506 | 472 | replicative DNA helicase; Provisional | 94.68 | |
| TIGR00678 | 188 | holB DNA polymerase III, delta' subunit. At positi | 94.59 | |
| PRK06904 | 472 | replicative DNA helicase; Validated | 94.59 | |
| PRK07940 | 394 | DNA polymerase III subunit delta'; Validated | 94.57 | |
| TIGR00596 | 814 | rad1 DNA repair protein (rad1). This family is bas | 94.54 | |
| PRK08699 | 325 | DNA polymerase III subunit delta'; Validated | 94.52 | |
| PRK11034 | 758 | clpA ATP-dependent Clp protease ATP-binding subuni | 94.45 | |
| TIGR03600 | 421 | phage_DnaB phage replicative helicase, DnaB family | 94.42 | |
| cd01126 | 384 | TraG_VirD4 The TraG/TraD/VirD4 family are bacteria | 94.36 | |
| KOG2004|consensus | 906 | 94.36 | ||
| PRK04328 | 249 | hypothetical protein; Provisional | 94.31 | |
| PRK06964 | 342 | DNA polymerase III subunit delta'; Validated | 94.3 | |
| COG0552 | 340 | FtsY Signal recognition particle GTPase [Intracell | 94.29 | |
| PRK06871 | 325 | DNA polymerase III subunit delta'; Validated | 94.29 | |
| TIGR00635 | 305 | ruvB Holliday junction DNA helicase, RuvB subunit. | 94.26 | |
| KOG0298|consensus | 1394 | 94.25 | ||
| KOG1513|consensus | 1300 | 94.23 | ||
| TIGR03743 | 634 | SXT_TraD conjugative coupling factor TraD, SXT/TOL | 94.18 | |
| PRK09376 | 416 | rho transcription termination factor Rho; Provisio | 94.17 | |
| PRK00080 | 328 | ruvB Holliday junction DNA helicase RuvB; Reviewed | 94.17 | |
| PF02572 | 172 | CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase | 94.16 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 94.15 | |
| TIGR02639 | 731 | ClpA ATP-dependent Clp protease ATP-binding subuni | 94.11 | |
| TIGR02538 | 564 | type_IV_pilB type IV-A pilus assembly ATPase PilB. | 94.11 | |
| TIGR00763 | 775 | lon ATP-dependent protease La. This protein is ind | 94.11 | |
| TIGR01650 | 327 | PD_CobS cobaltochelatase, CobS subunit. This model | 94.08 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 94.07 | |
| COG2805 | 353 | PilT Tfp pilus assembly protein, pilus retraction | 94.05 | |
| PRK14969 | 527 | DNA polymerase III subunits gamma and tau; Provisi | 94.04 | |
| PRK06645 | 507 | DNA polymerase III subunits gamma and tau; Validat | 94.03 | |
| PRK14951 | 618 | DNA polymerase III subunits gamma and tau; Provisi | 93.98 | |
| PF00154 | 322 | RecA: recA bacterial DNA recombination protein; In | 93.98 | |
| PF14617 | 252 | CMS1: U3-containing 90S pre-ribosomal complex subu | 93.96 | |
| PF03969 | 362 | AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 | 93.95 | |
| PF10412 | 386 | TrwB_AAD_bind: Type IV secretion-system coupling p | 93.92 | |
| PRK07004 | 460 | replicative DNA helicase; Provisional | 93.91 | |
| PRK07399 | 314 | DNA polymerase III subunit delta'; Validated | 93.89 | |
| COG0630 | 312 | VirB11 Type IV secretory pathway, VirB11 component | 93.87 | |
| PF01935 | 229 | DUF87: Domain of unknown function DUF87; InterPro: | 93.87 | |
| PF13481 | 193 | AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C. | 93.86 | |
| KOG0742|consensus | 630 | 93.76 | ||
| PRK10865 | 857 | protein disaggregation chaperone; Provisional | 93.72 | |
| PRK05748 | 448 | replicative DNA helicase; Provisional | 93.71 | |
| TIGR03878 | 259 | thermo_KaiC_2 KaiC domain protein, AF_0795 family. | 93.7 | |
| COG3267 | 269 | ExeA Type II secretory pathway, component ExeA (pr | 93.69 | |
| TIGR00665 | 434 | DnaB replicative DNA helicase. This model describe | 93.67 | |
| cd01127 | 410 | TrwB Bacterial conjugation protein TrwB, ATP bindi | 93.66 | |
| TIGR03346 | 852 | chaperone_ClpB ATP-dependent chaperone ClpB. Membe | 93.65 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 93.61 | |
| COG1702 | 348 | PhoH Phosphate starvation-inducible protein PhoH, | 93.6 | |
| PRK14959 | 624 | DNA polymerase III subunits gamma and tau; Provisi | 93.57 | |
| TIGR03819 | 340 | heli_sec_ATPase helicase/secretion neighborhood AT | 93.54 | |
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 93.52 | |
| TIGR02237 | 209 | recomb_radB DNA repair and recombination protein R | 93.5 | |
| TIGR02533 | 486 | type_II_gspE general secretory pathway protein E. | 93.5 | |
| cd00983 | 325 | recA RecA is a bacterial enzyme which has roles in | 93.47 | |
| TIGR02640 | 262 | gas_vesic_GvpN gas vesicle protein GvpN. Members o | 93.46 | |
| PRK14955 | 397 | DNA polymerase III subunits gamma and tau; Provisi | 93.46 | |
| TIGR02525 | 372 | plasmid_TraJ plasmid transfer ATPase TraJ. Members | 93.46 | |
| PRK14965 | 576 | DNA polymerase III subunits gamma and tau; Provisi | 93.45 | |
| PHA02542 | 473 | 41 41 helicase; Provisional | 93.42 | |
| TIGR03880 | 224 | KaiC_arch_3 KaiC domain protein, AF_0351 family. T | 93.38 | |
| PRK14948 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 93.38 | |
| PRK03992 | 389 | proteasome-activating nucleotidase; Provisional | 93.36 | |
| cd01394 | 218 | radB RadB. The archaeal protein radB shares simila | 93.28 | |
| PRK13897 | 606 | type IV secretion system component VirD4; Provisio | 93.26 | |
| PRK05563 | 559 | DNA polymerase III subunits gamma and tau; Validat | 93.25 | |
| TIGR02397 | 355 | dnaX_nterm DNA polymerase III, subunit gamma and t | 93.24 | |
| TIGR03689 | 512 | pup_AAA proteasome ATPase. In the Actinobacteria, | 93.22 | |
| COG1219 | 408 | ClpX ATP-dependent protease Clp, ATPase subunit [P | 93.15 | |
| PRK08760 | 476 | replicative DNA helicase; Provisional | 93.11 | |
| PRK10787 | 784 | DNA-binding ATP-dependent protease La; Provisional | 93.1 | |
| CHL00095 | 821 | clpC Clp protease ATP binding subunit | 93.04 | |
| KOG0741|consensus | 744 | 92.98 | ||
| PRK07133 | 725 | DNA polymerase III subunits gamma and tau; Validat | 92.94 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 92.92 | |
| PRK08840 | 464 | replicative DNA helicase; Provisional | 92.92 | |
| PRK14950 | 585 | DNA polymerase III subunits gamma and tau; Provisi | 92.9 | |
| CHL00176 | 638 | ftsH cell division protein; Validated | 92.87 | |
| PRK08451 | 535 | DNA polymerase III subunits gamma and tau; Validat | 92.84 | |
| TIGR03754 | 643 | conj_TOL_TraD conjugative coupling factor TraD, TO | 92.76 | |
| PRK06090 | 319 | DNA polymerase III subunit delta'; Validated | 92.75 | |
| PHA00012 | 361 | I assembly protein | 92.74 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 92.74 | |
| KOG0738|consensus | 491 | 92.68 | ||
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 92.61 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 92.45 | |
| PRK13695 | 174 | putative NTPase; Provisional | 92.42 | |
| PRK13850 | 670 | type IV secretion system protein VirD4; Provisiona | 92.41 | |
| PRK08006 | 471 | replicative DNA helicase; Provisional | 92.4 | |
| cd00544 | 169 | CobU Adenosylcobinamide kinase / adenosylcobinamid | 92.39 | |
| TIGR01243 | 733 | CDC48 AAA family ATPase, CDC48 subfamily. This sub | 92.38 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 92.32 | |
| KOG1001|consensus | 674 | 92.28 | ||
| PF03237 | 384 | Terminase_6: Terminase-like family; InterPro: IPR0 | 92.28 | |
| TIGR02767 | 623 | TraG-Ti Ti-type conjugative transfer system protie | 92.18 | |
| PRK13822 | 641 | conjugal transfer coupling protein TraG; Provision | 92.13 | |
| PRK05636 | 505 | replicative DNA helicase; Provisional | 92.13 | |
| PRK09165 | 497 | replicative DNA helicase; Provisional | 92.1 | |
| PRK07993 | 334 | DNA polymerase III subunit delta'; Validated | 92.09 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 92.09 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 92.03 | |
| TIGR01241 | 495 | FtsH_fam ATP-dependent metalloprotease FtsH. HflB( | 91.95 | |
| COG0210 | 655 | UvrD Superfamily I DNA and RNA helicases [DNA repl | 91.94 | |
| PF13479 | 213 | AAA_24: AAA domain | 91.93 | |
| COG0468 | 279 | RecA RecA/RadA recombinase [DNA replication, recom | 91.91 | |
| KOG0990|consensus | 360 | 91.9 | ||
| PF08423 | 256 | Rad51: Rad51; InterPro: IPR013632 This domain is f | 91.88 | |
| PRK09519 | 790 | recA DNA recombination protein RecA; Reviewed | 91.86 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 91.85 | |
| KOG1806|consensus | 1320 | 91.85 | ||
| COG3854 | 308 | SpoIIIAA ncharacterized protein conserved in bacte | 91.83 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 91.8 | |
| TIGR00602 | 637 | rad24 checkpoint protein rad24. This family is bas | 91.75 | |
| PRK12608 | 380 | transcription termination factor Rho; Provisional | 91.72 | |
| PRK13764 | 602 | ATPase; Provisional | 91.69 | |
| COG1485 | 367 | Predicted ATPase [General function prediction only | 91.66 | |
| PRK14954 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 91.65 | |
| PLN00020 | 413 | ribulose bisphosphate carboxylase/oxygenase activa | 91.51 | |
| PF07279 | 218 | DUF1442: Protein of unknown function (DUF1442); In | 91.51 | |
| TIGR01243 | 733 | CDC48 AAA family ATPase, CDC48 subfamily. This sub | 91.46 | |
| TIGR02524 | 358 | dot_icm_DotB Dot/Icm secretion system ATPase DotB. | 91.32 | |
| cd01125 | 239 | repA Hexameric Replicative Helicase RepA. RepA is | 91.31 | |
| TIGR02759 | 566 | TraD_Ftype type IV conjugative transfer system cou | 91.23 | |
| KOG1016|consensus | 1387 | 91.21 | ||
| PRK06321 | 472 | replicative DNA helicase; Provisional | 91.17 | |
| PF13207 | 121 | AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6 | 91.15 | |
| KOG0741|consensus | 744 | 91.08 |
| >KOG0948|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-53 Score=406.05 Aligned_cols=366 Identities=70% Similarity=1.146 Sum_probs=336.6
Q ss_pred eeEEeeehhchhceeccCCCCCcccccccc--cCCCCccCCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHH
Q psy6275 17 MKVIVVETLEACLHEVALPPDLEYQPLAQS--KEKPAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIA 94 (391)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~ 94 (391)
.......+.+.|..++.+|.+.++.++.+. -....+.++|++.|+|..+|..+.++++++++|.|++|||.++.+++.
T Consensus 87 ~~~~~~~~~~~c~HeVavP~~~dY~p~~~~~~~~~pAk~YPF~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA 166 (1041)
T KOG0948|consen 87 IVVTKREDREGCRHEVAVPPNYDYTPLLPKIFGKPPAKTYPFTLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIA 166 (1041)
T ss_pred eeeeeeeccccceeeeecCCccccCccccccCCCCcccCCCcccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHH
Confidence 334445567899999999988888885444 346788899999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccc
Q psy6275 95 SSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHY 174 (391)
Q Consensus 95 ~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~ 174 (391)
..++...||+|..|-++|.+|-++++..-+++||+.+|+.++++++..+|+|.+.|.+++.++..-++.+.++|+||+|.
T Consensus 167 ~sLr~kQRVIYTSPIKALSNQKYREl~~EF~DVGLMTGDVTInP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHY 246 (1041)
T KOG0948|consen 167 MSLREKQRVIYTSPIKALSNQKYRELLEEFKDVGLMTGDVTINPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHY 246 (1041)
T ss_pred HHHHhcCeEEeeChhhhhcchhHHHHHHHhcccceeecceeeCCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccchhHHHHHHHhCCCCcEEEEcccCCChHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCc-
Q psy6275 175 MRDKERGYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDN- 253 (391)
Q Consensus 175 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~- 253 (391)
|-|..+|..|+..+..+|.+.+.+++|||+||+.+|++|+.....+|++++..+.||+|++||+++.++++++++||++
T Consensus 247 MRDkERGVVWEETIIllP~~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~ 326 (1041)
T KOG0948|consen 247 MRDKERGVVWEETIILLPDNVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKG 326 (1041)
T ss_pred ccccccceeeeeeEEeccccceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEeccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhhhchHHHHHHhhhhhhhh-ccCCCCCCCCCCCCC--CCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhcc
Q psy6275 254 KFKEHNYQVAMNVLANAGDAA-KAGDHKGGRKGGPKG--GVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKL 330 (391)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~ 330 (391)
.|++++|+.+|..+...+... ......++++|+.++ ..+..+..+++.+.++...|+|||+-++++||.+|..|.++
T Consensus 327 ~FrednF~~am~~l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kl 406 (1041)
T KOG0948|consen 327 KFREDNFQKAMSVLRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKL 406 (1041)
T ss_pred ccchHHHHHHHHHhhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccC
Confidence 999999999999999976665 233334456655433 34558999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHhhhcchhhccCcchHhHHHHHHhhhhhccCCCCc
Q psy6275 331 NFNETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRGIGIHHGVKPY 382 (391)
Q Consensus 331 g~~~~~~r~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~~~~~ 382 (391)
.++..+++..+...|.++++.|..+|+.+||+..+..+|.|||||||+||-.
T Consensus 407 dfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLP 458 (1041)
T KOG0948|consen 407 DFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLP 458 (1041)
T ss_pred cCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchH
Confidence 9999999999999999999999999999999999999999999999999854
|
|
| >KOG0330|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=319.54 Aligned_cols=287 Identities=19% Similarity=0.182 Sum_probs=240.6
Q ss_pred cCCCCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc---CCeEEEEcc
Q psy6275 33 ALPPDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ---SQRVIYTTP 108 (391)
Q Consensus 33 ~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~---~~~vlvl~P 108 (391)
....+|..+++.+++.+++...++. ||++|+++||.++.|++++..|.||||||.+|++|+++.+-. .++++|++|
T Consensus 58 e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtP 137 (476)
T KOG0330|consen 58 ESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTP 137 (476)
T ss_pred hhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecC
Confidence 3456899999999999999999997 999999999999999999999999999999999999998844 478999999
Q ss_pred cHHHHHHHHHHHHHhcc----cceeeeCCccc-------CCCCCEEEEcHHHHHHHHhc-CccccCccceEEEecccccC
Q psy6275 109 IKALSNQKYREFEEQFK----DVGLITGDVTI-------NPSSSCLIMTTEILRNMLYR-GSEITREVGWVIFDEIHYMR 176 (391)
Q Consensus 109 ~~~L~~q~~~~~~~~~~----~v~~~~g~~~~-------~~~~~I~v~Tp~~l~~~l~~-~~~~l~~~~~lViDE~h~~~ 176 (391)
||||+.|+...+..++. .+.++.|+... ..+++|+|+||++|++++.+ +...+..++++|+||||+++
T Consensus 138 tRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlL 217 (476)
T KOG0330|consen 138 TRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLL 217 (476)
T ss_pred cHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhh
Confidence 99999999999999977 55567787663 45799999999999999984 45678899999999999999
Q ss_pred ccccchhHHHHHHHhCCCCcEEEEcccCCChHHHHHHhccccCCCeeEeeeCCCC-c-CceEeeccCCCCCeeeeecCch
Q psy6275 177 DKERGYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRP-T-PLQHYLFPNGGDGIHLIVDDNK 254 (391)
Q Consensus 177 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~~-~-~i~~~~~~~~~~~~~~~v~~~~ 254 (391)
++.|...++.|+..++..+|.+++|||++.. +.+........|..+..+.... + .+.+++..++..
T Consensus 218 d~dF~~~ld~ILk~ip~erqt~LfsATMt~k--v~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k---------- 285 (476)
T KOG0330|consen 218 DMDFEEELDYILKVIPRERQTFLFSATMTKK--VRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGK---------- 285 (476)
T ss_pred hhhhHHHHHHHHHhcCccceEEEEEeecchh--hHHHHhhccCCCeEEeccchhcchHHhhhheEecccc----------
Confidence 9999999999999999999999999999876 2233335556777766554332 2 466666655532
Q ss_pred hhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCC
Q psy6275 255 FKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNE 334 (391)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~ 334 (391)
.+-..|+.++++..+.++||||+|...++.++-.|+..|+.+
T Consensus 286 --------------------------------------~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a 327 (476)
T KOG0330|consen 286 --------------------------------------DKDTYLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQA 327 (476)
T ss_pred --------------------------------------ccchhHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhcCcce
Confidence 223478888888888899999999999999999999999887
Q ss_pred h--------HHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhccCCC
Q psy6275 335 T--------EEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHGVK 380 (391)
Q Consensus 335 ~--------~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~~~ 380 (391)
- +-|.-..+.|+. ..++|++|| +.+||.|++|+++
T Consensus 328 ~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TD-----------VaSRGLDip~Vd~ 371 (476)
T KOG0330|consen 328 IPLHGQMSQSKRLGALNKFKAGARSILVCTD-----------VASRGLDIPHVDV 371 (476)
T ss_pred ecccchhhHHHHHHHHHHHhccCCcEEEecc-----------hhcccCCCCCceE
Confidence 4 456666777777 567777775 9999999999876
|
|
| >KOG0947|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=334.89 Aligned_cols=333 Identities=49% Similarity=0.800 Sum_probs=280.0
Q ss_pred cCCCCccCCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhccc
Q psy6275 47 KEKPAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKD 126 (391)
Q Consensus 47 ~~~~~~~~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~ 126 (391)
+......++|++..+|++||-++..|.++++.|+|++|||.++.+++.-.-....|.+|..|-++|.+|-++.|+..++.
T Consensus 287 Vpe~a~~~pFelD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~h~TR~iYTSPIKALSNQKfRDFk~tF~D 366 (1248)
T KOG0947|consen 287 VPEMALIYPFELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFKETFGD 366 (1248)
T ss_pred chhHHhhCCCCccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHhhccceEecchhhhhccchHHHHHHhccc
Confidence 34456678999999999999999999999999999999999998888777778899999999999999999999999999
Q ss_pred ceeeeCCcccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEcccCCC
Q psy6275 127 VGLITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPN 206 (391)
Q Consensus 127 v~~~~g~~~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 206 (391)
+++++|+..+++.+.++|+|.+.|.+++.++...++++.+||+||+|.+.|..+|..|+.++..+|...++|++|||.||
T Consensus 367 vgLlTGDvqinPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV~~IlLSATVPN 446 (1248)
T KOG0947|consen 367 VGLLTGDVQINPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHVNFILLSATVPN 446 (1248)
T ss_pred cceeecceeeCCCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeeccccceEEEEeccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCc-hhhhhchHHHHHHhhh---hhhhhccCC----
Q psy6275 207 ASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDN-KFKEHNYQVAMNVLAN---AGDAAKAGD---- 278 (391)
Q Consensus 207 ~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~---- 278 (391)
+.+|++|++..+...++|+....||+|++++++.- +....+++.+ .|....+..+...+.. .-+......
T Consensus 447 ~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~--~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~~~~~~~~r 524 (1248)
T KOG0947|consen 447 TLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTK--KSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVEKSDARGGR 524 (1248)
T ss_pred hHHHHHHhhhccCceEEEEecCCCccceEEEEEec--cceehhhcccchhhhhcchhhhhhhcccccccccccccccccc
Confidence 99999999999999999999999999999999863 3445455554 3333434333333321 000000000
Q ss_pred --CCCC-CCCCCCC-------C----CcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCChHHHHHHHHH
Q psy6275 279 --HKGG-RKGGPKG-------G----VQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNETEEVKLVDDV 344 (391)
Q Consensus 279 --~~~~-~~~~~~~-------~----~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~~~~r~~~~~~ 344 (391)
.+++ +.+...+ + .+..+..++..+.....-|+||||-|++.|+..|+.|....++...+++.+.-+
T Consensus 525 gs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lf 604 (1248)
T KOG0947|consen 525 GSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLF 604 (1248)
T ss_pred cccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHH
Confidence 0000 0000000 0 112356677777777778999999999999999999999999999999999999
Q ss_pred HHHHhhhcchhhccCcchHhHHHHHHhhhhhccCCCC
Q psy6275 345 FSNAMDVLSEEDRKLPQIENILPLLRRGIGIHHGVKP 381 (391)
Q Consensus 345 ~~~~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~~~~ 381 (391)
+...+..|...|+.+||+..+.+++.|||++||||+-
T Consensus 605 l~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlL 641 (1248)
T KOG0947|consen 605 LSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLL 641 (1248)
T ss_pred HHHHHHhcChhhccchHHHHHHHHHhhcchhhcccch
Confidence 9999999999999999999999999999999999985
|
|
| >COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-41 Score=340.64 Aligned_cols=335 Identities=52% Similarity=0.855 Sum_probs=287.9
Q ss_pred cCCCCccCCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhccc
Q psy6275 47 KEKPAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKD 126 (391)
Q Consensus 47 ~~~~~~~~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~ 126 (391)
.......+||++.++|++++..+.++++++++||||+|||.+..+++...+.++.+++|+.|.++|.+|.+..+...+++
T Consensus 109 ~~~~~~~~~F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~qrviYTsPIKALsNQKyrdl~~~fgd 188 (1041)
T COG4581 109 LAPPAREYPFELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDGQRVIYTSPIKALSNQKYRDLLAKFGD 188 (1041)
T ss_pred cCcHHHhCCCCcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHcCCceEeccchhhhhhhHHHHHHHHhhh
Confidence 45566778999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred c----eeeeCCcccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEcc
Q psy6275 127 V----GLITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSA 202 (391)
Q Consensus 127 v----~~~~g~~~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 202 (391)
+ ++++|+.++++++.++|+|.+.|.+++.++...++.+..||+||+|.|.|..+|..|+.++..++...++++|||
T Consensus 189 v~~~vGL~TGDv~IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~~v~~v~LSA 268 (1041)
T COG4581 189 VADMVGLMTGDVSINPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPDHVRFVFLSA 268 (1041)
T ss_pred hhhhccceecceeeCCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcCCCCcEEEEeC
Confidence 7 999999999999999999999999999999889999999999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCc-hhhhhchHHHHHHhhhhh-hhhccCC--
Q psy6275 203 TIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDN-KFKEHNYQVAMNVLANAG-DAAKAGD-- 278 (391)
Q Consensus 203 T~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~-- 278 (391)
|++|+.+|+.|++.....+++++..+.||+|++++++.. ++++..++++ .+....+..+...+.... -..+.+.
T Consensus 269 Tv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~--~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~ 346 (1041)
T COG4581 269 TVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVG--KGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRETDDGD 346 (1041)
T ss_pred CCCCHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecC--CceeeeecccccchhhcchhhhhhhhccchhccccCccc
Confidence 999999999999998999999999999999999999864 6788888887 566677666666555221 1111111
Q ss_pred ---CCCCCCCCCCCC--CcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCChHHHHH-HHHHHHHHhhhc
Q psy6275 279 ---HKGGRKGGPKGG--VQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNETEEVKL-VDDVFSNAMDVL 352 (391)
Q Consensus 279 ---~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~~~~r~~-~~~~~~~~~~~l 352 (391)
..+..+++ +++ .......++..+...+.-++|+|+-+++.|+.++..+....+...+++.. +...+.+.+..|
T Consensus 347 ~~~~a~~~~~~-~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L 425 (1041)
T COG4581 347 VGRYARRTKAL-RGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDL 425 (1041)
T ss_pred ccccccccccc-CCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhc
Confidence 00111100 010 11233567888888888899999999999999999999877777766655 899999999999
Q ss_pred chhhccCc-chHhHHHHHHhhhhhccCCCCccc
Q psy6275 353 SEEDRKLP-QIENILPLLRRGIGIHHGVKPYGL 384 (391)
Q Consensus 353 ~~~d~~~~-~~~~~~~~l~~GI~~~h~~~~~~~ 384 (391)
..+|..++ ++..+..+|-|||++||+||-...
T Consensus 426 ~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~ 458 (1041)
T COG4581 426 AEEDRELPLQILEISALLLRGIAVHHAGLLPAI 458 (1041)
T ss_pred ChhhhcCcccHHHHHHHHhhhhhhhccccchHH
Confidence 99999997 999999999999999999996544
|
|
| >KOG0331|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-42 Score=329.55 Aligned_cols=285 Identities=20% Similarity=0.209 Sum_probs=232.8
Q ss_pred CCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc---------CCeEEEE
Q psy6275 37 DLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ---------SQRVIYT 106 (391)
Q Consensus 37 ~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~---------~~~vlvl 106 (391)
.|+++++++.....++..||+ |||+|.+.||.++.|++++..|.||||||++|++|++.++.. ++++||+
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL 171 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVL 171 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEE
Confidence 578888999999999999998 999999999999999999999999999999999999998864 6899999
Q ss_pred cccHHHHHHHHHHHHHhcc----cceeeeCCcccCC-------CCCEEEEcHHHHHHHHhcCccccCccceEEEeccccc
Q psy6275 107 TPIKALSNQKYREFEEQFK----DVGLITGDVTINP-------SSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYM 175 (391)
Q Consensus 107 ~P~~~L~~q~~~~~~~~~~----~v~~~~g~~~~~~-------~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~ 175 (391)
+|||||+.|+.+.+.++.. +..+++|+.+..+ ..+|+|+||+++.+++..+...++.+.++|+||||+|
T Consensus 172 ~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrM 251 (519)
T KOG0331|consen 172 APTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRM 251 (519)
T ss_pred cCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhh
Confidence 9999999999999999988 3556888887644 4789999999999999999999999999999999999
Q ss_pred CccccchhHHHHHHHh-CCCCcEEEEcccCCCh-HHHHHHhccccCCCeeEeeeCCC----CcCceEeeccCCCCCeeee
Q psy6275 176 RDKERGYVWEETLILL-SDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVYTDYR----PTPLQHYLFPNGGDGIHLI 249 (391)
Q Consensus 176 ~~~~~~~~~~~i~~~~-~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~~~~~~----~~~i~~~~~~~~~~~~~~~ 249 (391)
++++|.+.++.|+..+ +...|++++|||+|.. +.++.-+ ..+|..+...... ...+.|.+..++..
T Consensus 252 ldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~f---l~~~~~i~ig~~~~~~a~~~i~qive~~~~~----- 323 (519)
T KOG0331|consen 252 LDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDF---LNNPIQINVGNKKELKANHNIRQIVEVCDET----- 323 (519)
T ss_pred hccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHH---hcCceEEEecchhhhhhhcchhhhhhhcCHH-----
Confidence 9999999999999999 5566899999999987 7777743 3466655544331 22445544433310
Q ss_pred ecCchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhc
Q psy6275 250 VDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAK 329 (391)
Q Consensus 250 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~ 329 (391)
.. ...+..+++.......+++||||+|++.|+.|+..|+.
T Consensus 324 -----------~K-----------------------------~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~ 363 (519)
T KOG0331|consen 324 -----------AK-----------------------------LRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRR 363 (519)
T ss_pred -----------HH-----------------------------HHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHh
Confidence 00 12233455544444567999999999999999999998
Q ss_pred cCCCC--------hHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhccCCC
Q psy6275 330 LNFNE--------TEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHGVK 380 (391)
Q Consensus 330 ~g~~~--------~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~~~ 380 (391)
.++++ +.+|+.++..|++ ...+|++|| +.+||+||..+.+
T Consensus 364 ~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATd-----------VAaRGLDi~dV~l 412 (519)
T KOG0331|consen 364 KGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATD-----------VAARGLDVPDVDL 412 (519)
T ss_pred cCcceeeecccccHHHHHHHHHhcccCCcceEEEcc-----------cccccCCCccccE
Confidence 76655 4789998888877 667888885 9999999975443
|
|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=330.22 Aligned_cols=284 Identities=21% Similarity=0.267 Sum_probs=240.2
Q ss_pred CCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc--CC--e-EEEEccc
Q psy6275 36 PDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ--SQ--R-VIYTTPI 109 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~--~~--~-vlvl~P~ 109 (391)
..|..+++++.+.+.+.+.||+ |||+|.++||.++.|+|+++.|+||||||.+|.+|+++.+.. .. . +||++||
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PT 108 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPT 108 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCC
Confidence 5688999999999999999997 999999999999999999999999999999999999998862 21 2 9999999
Q ss_pred HHHHHHHHHHHHHhccc-----ceeeeCCcccC-------CCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCc
Q psy6275 110 KALSNQKYREFEEQFKD-----VGLITGDVTIN-------PSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRD 177 (391)
Q Consensus 110 ~~L~~q~~~~~~~~~~~-----v~~~~g~~~~~-------~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~ 177 (391)
|||+.|+++.+..+... +..++|+.... ..++|+|+||+++++++.+....+..+.++|+||||+|++
T Consensus 109 RELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd 188 (513)
T COG0513 109 RELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLD 188 (513)
T ss_pred HHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhc
Confidence 99999999999998873 45688877642 3589999999999999999988899999999999999999
Q ss_pred cccchhHHHHHHHhCCCCcEEEEcccCCChHHHHHHhccccCCCeeEeeeCC----CCcCceEeeccCCCCCeeeeecCc
Q psy6275 178 KERGYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDY----RPTPLQHYLFPNGGDGIHLIVDDN 253 (391)
Q Consensus 178 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~----~~~~i~~~~~~~~~~~~~~~v~~~ 253 (391)
++|...++.++..++.+.|+++||||++.. +..+...++.+|..+..... ....++|+++.+...+
T Consensus 189 ~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~--i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~-------- 258 (513)
T COG0513 189 MGFIDDIEKILKALPPDRQTLLFSATMPDD--IRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEE-------- 258 (513)
T ss_pred CCCHHHHHHHHHhCCcccEEEEEecCCCHH--HHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHH--------
Confidence 999999999999999999999999999885 44444456667776655522 3457888888765320
Q ss_pred hhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCC
Q psy6275 254 KFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFN 333 (391)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~ 333 (391)
++...|..++......++||||+|+..|+.++..|...|+.
T Consensus 259 ---------------------------------------~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~ 299 (513)
T COG0513 259 ---------------------------------------EKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFK 299 (513)
T ss_pred ---------------------------------------HHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCCe
Confidence 13556777777666668999999999999999999998876
Q ss_pred C--------hHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhccCC
Q psy6275 334 E--------TEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHGV 379 (391)
Q Consensus 334 ~--------~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~~ 379 (391)
+ +++|....+.|++ ..++|++|| +.+|||||++..
T Consensus 300 ~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTD-----------vaaRGiDi~~v~ 343 (513)
T COG0513 300 VAALHGDLPQEERDRALEKFKDGELRVLVATD-----------VAARGLDIPDVS 343 (513)
T ss_pred EEEecCCCCHHHHHHHHHHHHcCCCCEEEEec-----------hhhccCCccccc
Confidence 5 3778888888887 778888885 999999998644
|
|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-40 Score=323.47 Aligned_cols=280 Identities=18% Similarity=0.287 Sum_probs=228.7
Q ss_pred CCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc---CCeEEEEcccHH
Q psy6275 36 PDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ---SQRVIYTTPIKA 111 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~---~~~vlvl~P~~~ 111 (391)
.+|+.+++++.+...+..+||+ |||+|.+|++.+.+|+|++++||||||||++|.+|+++.+.. ..+++|++||++
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~Ptre 83 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRE 83 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHH
Confidence 4688999999999999999997 999999999999999999999999999999999999998854 358999999999
Q ss_pred HHHHHHHHHHHhcc-----cceeeeCCccc-------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccc
Q psy6275 112 LSNQKYREFEEQFK-----DVGLITGDVTI-------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKE 179 (391)
Q Consensus 112 L~~q~~~~~~~~~~-----~v~~~~g~~~~-------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~ 179 (391)
|+.|+.+.++.+.. .+..++|+.+. ...++|+|+||+++..++.+....+++++++|+||||+|++++
T Consensus 84 La~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~g 163 (460)
T PRK11776 84 LADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMG 163 (460)
T ss_pred HHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCcC
Confidence 99999999988753 45567787654 3467999999999999998887788999999999999999999
Q ss_pred cchhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHHhccccCCCeeEeeeCC-CCcCceEeeccCCCCCeeeeecCchhhh
Q psy6275 180 RGYVWEETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVYTDY-RPTPLQHYLFPNGGDGIHLIVDDNKFKE 257 (391)
Q Consensus 180 ~~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~~~~~-~~~~i~~~~~~~~~~~~~~~v~~~~~~~ 257 (391)
+...+..++..++...|++++|||+++. ..++. .+...+..+..... ....++++++.++..
T Consensus 164 ~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~---~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~------------- 227 (460)
T PRK11776 164 FQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQ---RFQRDPVEVKVESTHDLPAIEQRFYEVSPD------------- 227 (460)
T ss_pred cHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHH---HhcCCCEEEEECcCCCCCCeeEEEEEeCcH-------------
Confidence 9999999999999999999999999866 44444 33445555543332 233466666644321
Q ss_pred hchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCC---
Q psy6275 258 HNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNE--- 334 (391)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~--- 334 (391)
.+...+...+......++||||+|++.|+.+++.|...|+.+
T Consensus 228 -----------------------------------~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~ 272 (460)
T PRK11776 228 -----------------------------------ERLPALQRLLLHHQPESCVVFCNTKKECQEVADALNAQGFSALAL 272 (460)
T ss_pred -----------------------------------HHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHHHHhCCCcEEEE
Confidence 123355555665566789999999999999999999876654
Q ss_pred -----hHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhcc
Q psy6275 335 -----TEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHH 377 (391)
Q Consensus 335 -----~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h 377 (391)
..+|+.+++.|++ ..++|++|| ++++|||++.
T Consensus 273 hg~~~~~eR~~~l~~F~~g~~~vLVaTd-----------v~~rGiDi~~ 310 (460)
T PRK11776 273 HGDLEQRDRDQVLVRFANRSCSVLVATD-----------VAARGLDIKA 310 (460)
T ss_pred eCCCCHHHHHHHHHHHHcCCCcEEEEec-----------ccccccchhc
Confidence 3778888888887 667788775 9999999975
|
|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=315.72 Aligned_cols=281 Identities=19% Similarity=0.147 Sum_probs=219.7
Q ss_pred CCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh----------cCCeEE
Q psy6275 36 PDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK----------QSQRVI 104 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~----------~~~~vl 104 (391)
.+|+.+++++.+.+.+..+||+ |+++|.++||.+++|+|++++||||||||++|++|+++.+. .++++|
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~l 87 (423)
T PRK04837 8 QKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRAL 87 (423)
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 4788999999999999999997 99999999999999999999999999999999999988763 246899
Q ss_pred EEcccHHHHHHHHHHHHHhcc----cceeeeCCccc-------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEeccc
Q psy6275 105 YTTPIKALSNQKYREFEEQFK----DVGLITGDVTI-------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIH 173 (391)
Q Consensus 105 vl~P~~~L~~q~~~~~~~~~~----~v~~~~g~~~~-------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h 173 (391)
|++||++|+.|+++.+..+.. .+..++|+... ...++|+|+||+++.+++.+....+.+++++|+||||
T Consensus 88 il~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad 167 (423)
T PRK04837 88 IMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 167 (423)
T ss_pred EECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHH
Confidence 999999999999998888765 45667776542 3457999999999999998887888999999999999
Q ss_pred ccCccccchhHHHHHHHhCC--CCcEEEEcccCCCh-HHHHHHhccccCCCeeEeeeCCC--CcCceEeeccCCCCCeee
Q psy6275 174 YMRDKERGYVWEETLILLSD--NVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVYTDYR--PTPLQHYLFPNGGDGIHL 248 (391)
Q Consensus 174 ~~~~~~~~~~~~~i~~~~~~--~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~~~~~~--~~~i~~~~~~~~~~~~~~ 248 (391)
++++.++...+..++..++. ..+.+++|||++.. ..+.. .....|..+...... ...+.+.+++...
T Consensus 168 ~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~---~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~----- 239 (423)
T PRK04837 168 RMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAF---EHMNNPEYVEVEPEQKTGHRIKEELFYPSN----- 239 (423)
T ss_pred HHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHH---HHCCCCEEEEEcCCCcCCCceeEEEEeCCH-----
Confidence 99998888888888888864 46789999999765 33332 223455444433222 1233333332110
Q ss_pred eecCchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhh
Q psy6275 249 IVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMA 328 (391)
Q Consensus 249 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~ 328 (391)
..+...+...+......++||||+++..|+.++..|.
T Consensus 240 -------------------------------------------~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~ 276 (423)
T PRK04837 240 -------------------------------------------EEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLA 276 (423)
T ss_pred -------------------------------------------HHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHH
Confidence 0123345555555556799999999999999999999
Q ss_pred ccCCCC--------hHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhccC
Q psy6275 329 KLNFNE--------TEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHG 378 (391)
Q Consensus 329 ~~g~~~--------~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~ 378 (391)
..|+.+ ..+|..+.+.|++ .+.+|++|| +++||||+++.
T Consensus 277 ~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd-----------v~~rGiDip~v 324 (423)
T PRK04837 277 ADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATD-----------VAARGLHIPAV 324 (423)
T ss_pred hCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEec-----------hhhcCCCcccc
Confidence 877654 3678888888877 678888885 99999999854
|
|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-39 Score=316.70 Aligned_cols=279 Identities=20% Similarity=0.219 Sum_probs=220.4
Q ss_pred CCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc---------CCeEEEE
Q psy6275 37 DLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ---------SQRVIYT 106 (391)
Q Consensus 37 ~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~---------~~~vlvl 106 (391)
+|+.++|++.+.+.+.++||. ||++|.++|+.+++++|++++||||+|||++|++|+++.+.. ..++||+
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil 81 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEE
Confidence 578889999999999999997 999999999999999999999999999999999999988743 2479999
Q ss_pred cccHHHHHHHHHHHHHhcc----cceeeeCCccc-------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEeccccc
Q psy6275 107 TPIKALSNQKYREFEEQFK----DVGLITGDVTI-------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYM 175 (391)
Q Consensus 107 ~P~~~L~~q~~~~~~~~~~----~v~~~~g~~~~-------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~ 175 (391)
+||++|+.|+.+.++.+.. .+..++|+... ...++|+|+||+++++++......++++++||+||||++
T Consensus 82 ~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~l 161 (456)
T PRK10590 82 TPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRM 161 (456)
T ss_pred eCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHH
Confidence 9999999999999998876 33446666543 346799999999999998888778899999999999999
Q ss_pred CccccchhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHHhccccCCCeeEeeeCC--CCcCceEeeccCCCCCeeeeecC
Q psy6275 176 RDKERGYVWEETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVYTDY--RPTPLQHYLFPNGGDGIHLIVDD 252 (391)
Q Consensus 176 ~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~~~~~--~~~~i~~~~~~~~~~~~~~~v~~ 252 (391)
+++++...+..++..++...|++++|||+++. ..+..++ ..++..+..... ....+.+++..++..
T Consensus 162 l~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~---~~~~~~i~~~~~~~~~~~i~~~~~~~~~~-------- 230 (456)
T PRK10590 162 LDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKL---LHNPLEIEVARRNTASEQVTQHVHFVDKK-------- 230 (456)
T ss_pred hccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHH---cCCCeEEEEecccccccceeEEEEEcCHH--------
Confidence 99988888888999899899999999999876 5555543 234444433221 222345554432210
Q ss_pred chhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCC
Q psy6275 253 NKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNF 332 (391)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~ 332 (391)
.+...+...+......++||||+++..|+.+++.|.+.|+
T Consensus 231 ----------------------------------------~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~ 270 (456)
T PRK10590 231 ----------------------------------------RKRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGI 270 (456)
T ss_pred ----------------------------------------HHHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHCCC
Confidence 0111233334445567899999999999999999998776
Q ss_pred CC--------hHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhcc
Q psy6275 333 NE--------TEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHH 377 (391)
Q Consensus 333 ~~--------~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h 377 (391)
.+ ..+|..+.+.|++ .+++|++|| ++++|||++.
T Consensus 271 ~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTd-----------v~~rGiDip~ 313 (456)
T PRK10590 271 RSAAIHGNKSQGARTRALADFKSGDIRVLVATD-----------IAARGLDIEE 313 (456)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcc-----------HHhcCCCccc
Confidence 54 3678888888887 667888774 9999999863
|
|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-39 Score=321.98 Aligned_cols=280 Identities=16% Similarity=0.201 Sum_probs=218.9
Q ss_pred CCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh--------cCCeEEEEc
Q psy6275 37 DLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK--------QSQRVIYTT 107 (391)
Q Consensus 37 ~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~--------~~~~vlvl~ 107 (391)
+|..+++++.+.+.+...||+ ||++|.++||.+++|+|++++||||||||++|++|++..+. .++++||++
T Consensus 131 ~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~ 210 (545)
T PTZ00110 131 SFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLA 210 (545)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEEC
Confidence 688888999999999999997 99999999999999999999999999999999999887653 256899999
Q ss_pred ccHHHHHHHHHHHHHhcc----cceeeeCCccc-------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccC
Q psy6275 108 PIKALSNQKYREFEEQFK----DVGLITGDVTI-------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMR 176 (391)
Q Consensus 108 P~~~L~~q~~~~~~~~~~----~v~~~~g~~~~-------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~ 176 (391)
||++|+.|+.+.+..+.. .+..++|+... ...++|+|+||++|.+++.+....++++++||+||||+|+
T Consensus 211 PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~ml 290 (545)
T PTZ00110 211 PTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRML 290 (545)
T ss_pred ChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhh
Confidence 999999999999998876 34456666542 3357999999999999998887788999999999999999
Q ss_pred ccccchhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHHhccccCCCeeEeeeCCC---CcCceEeeccCCCCCeeeeecC
Q psy6275 177 DKERGYVWEETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVYTDYR---PTPLQHYLFPNGGDGIHLIVDD 252 (391)
Q Consensus 177 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~~~~~~---~~~i~~~~~~~~~~~~~~~v~~ 252 (391)
++++...+..++..+++..|++++|||++.. +.++..+. ...++.+...... ...+++.++.+...
T Consensus 291 d~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~--~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~-------- 360 (545)
T PTZ00110 291 DMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLC--KEEPVHVNVGSLDLTACHNIKQEVFVVEEH-------- 360 (545)
T ss_pred hcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHh--ccCCEEEEECCCccccCCCeeEEEEEEech--------
Confidence 9999999999999998899999999999876 55655432 1234444332221 12344444322110
Q ss_pred chhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHc--CCCcEEEEEcchhhHHHHHHHhhcc
Q psy6275 253 NKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMER--NLAPVIVFSFSKKDCEIYAMQMAKL 330 (391)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~iIF~~t~~~~~~la~~L~~~ 330 (391)
.+...+...+... ...++||||+|++.|+.++..|+..
T Consensus 361 ----------------------------------------~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~ 400 (545)
T PTZ00110 361 ----------------------------------------EKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLD 400 (545)
T ss_pred ----------------------------------------hHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHc
Confidence 1112333333321 4569999999999999999999987
Q ss_pred CCCC--------hHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhcc
Q psy6275 331 NFNE--------TEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHH 377 (391)
Q Consensus 331 g~~~--------~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h 377 (391)
|+.+ .++|..+.+.|++ ...+|++| ++++||||+..
T Consensus 401 g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaT-----------dv~~rGIDi~~ 445 (545)
T PTZ00110 401 GWPALCIHGDKKQEERTWVLNEFKTGKSPIMIAT-----------DVASRGLDVKD 445 (545)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEc-----------chhhcCCCccc
Confidence 7654 3678888888887 56777777 49999999964
|
|
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-39 Score=322.63 Aligned_cols=281 Identities=17% Similarity=0.213 Sum_probs=223.9
Q ss_pred CCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc---CCeEEEEcccHH
Q psy6275 36 PDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ---SQRVIYTTPIKA 111 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~---~~~vlvl~P~~~ 111 (391)
.+|..++|++.+.+.+.++||+ |+|+|.++|+.+++++++++.||||+|||++|.+|+++.+.. .+++||++||++
T Consensus 6 ~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTre 85 (629)
T PRK11634 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRE 85 (629)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHH
Confidence 3588889999999999999997 999999999999999999999999999999999999887743 468999999999
Q ss_pred HHHHHHHHHHHhcc-----cceeeeCCccc-------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccc
Q psy6275 112 LSNQKYREFEEQFK-----DVGLITGDVTI-------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKE 179 (391)
Q Consensus 112 L~~q~~~~~~~~~~-----~v~~~~g~~~~-------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~ 179 (391)
|+.|+++.+..+.+ .+..++|+... ...++|+|+||+++++++.+....+.++++||+||||+|++++
T Consensus 86 La~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~g 165 (629)
T PRK11634 86 LAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMG 165 (629)
T ss_pred HHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhcc
Confidence 99999999887754 44456666543 3468999999999999998888889999999999999999998
Q ss_pred cchhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHHhccccCCCeeEeeeCCC--CcCceEeeccCCCCCeeeeecCchhh
Q psy6275 180 RGYVWEETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVYTDYR--PTPLQHYLFPNGGDGIHLIVDDNKFK 256 (391)
Q Consensus 180 ~~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~~~~~~--~~~i~~~~~~~~~~~~~~~v~~~~~~ 256 (391)
+...+..++..++...|+++||||+|.. ..+... +..++..+...... ...+.+.++.+...
T Consensus 166 f~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~---~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~------------ 230 (629)
T PRK11634 166 FIEDVETIMAQIPEGHQTALFSATMPEAIRRITRR---FMKEPQEVRIQSSVTTRPDISQSYWTVWGM------------ 230 (629)
T ss_pred cHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHH---HcCCCeEEEccCccccCCceEEEEEEechh------------
Confidence 8889999999999999999999999876 444443 33445444332221 12344444322210
Q ss_pred hhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCC--
Q psy6275 257 EHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNE-- 334 (391)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~-- 334 (391)
.+...+...+......++||||+|+..|+.++..|...|+.+
T Consensus 231 ------------------------------------~k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~ 274 (629)
T PRK11634 231 ------------------------------------RKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAA 274 (629)
T ss_pred ------------------------------------hHHHHHHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhCCCCEEE
Confidence 223355666666556789999999999999999999887664
Q ss_pred ------hHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhccC
Q psy6275 335 ------TEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHG 378 (391)
Q Consensus 335 ------~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~ 378 (391)
..+|..+++.|++ .+++|++|| ++++|||+++.
T Consensus 275 lhgd~~q~~R~~il~~Fr~G~~~ILVATd-----------v~arGIDip~V 314 (629)
T PRK11634 275 LNGDMNQALREQTLERLKDGRLDILIATD-----------VAARGLDVERI 314 (629)
T ss_pred eeCCCCHHHHHHHHHHHhCCCCCEEEEcc-----------hHhcCCCcccC
Confidence 3678888888877 678888875 99999999754
|
|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-39 Score=321.37 Aligned_cols=279 Identities=16% Similarity=0.156 Sum_probs=220.0
Q ss_pred CCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc----------CCeEEE
Q psy6275 37 DLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ----------SQRVIY 105 (391)
Q Consensus 37 ~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~----------~~~vlv 105 (391)
+|+.++|++.+.+.+.+.||+ ||++|.++||.+++|+|+++.||||||||++|++|+++.+.. ++++||
T Consensus 10 ~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLI 89 (572)
T PRK04537 10 TFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALI 89 (572)
T ss_pred ChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEE
Confidence 588899999999999999997 999999999999999999999999999999999999987632 369999
Q ss_pred EcccHHHHHHHHHHHHHhcc----cceeeeCCccc-------CCCCCEEEEcHHHHHHHHhcC-ccccCccceEEEeccc
Q psy6275 106 TTPIKALSNQKYREFEEQFK----DVGLITGDVTI-------NPSSSCLIMTTEILRNMLYRG-SEITREVGWVIFDEIH 173 (391)
Q Consensus 106 l~P~~~L~~q~~~~~~~~~~----~v~~~~g~~~~-------~~~~~I~v~Tp~~l~~~l~~~-~~~l~~~~~lViDE~h 173 (391)
++||++|+.|+++.+..+.. .+..++|+... ...++|+|+||++|++++.+. ...+..+++|||||||
T Consensus 90 l~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh 169 (572)
T PRK04537 90 LAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEAD 169 (572)
T ss_pred EeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHH
Confidence 99999999999999998876 45667787653 335789999999999988764 3567889999999999
Q ss_pred ccCccccchhHHHHHHHhCC--CCcEEEEcccCCCh-HHHHHHhccccCCCeeEeeeCC--CCcCceEeeccCCCCCeee
Q psy6275 174 YMRDKERGYVWEETLILLSD--NVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVYTDY--RPTPLQHYLFPNGGDGIHL 248 (391)
Q Consensus 174 ~~~~~~~~~~~~~i~~~~~~--~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~~~~~--~~~~i~~~~~~~~~~~~~~ 248 (391)
++++.++...+..++..++. ..|+++||||++.. ..+.. .....+..+..... ....+.+.++....
T Consensus 170 ~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~---~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~----- 241 (572)
T PRK04537 170 RMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAY---EHMNEPEKLVVETETITAARVRQRIYFPAD----- 241 (572)
T ss_pred HHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHH---HHhcCCcEEEeccccccccceeEEEEecCH-----
Confidence 99998888888888888875 68999999999765 33332 22334433332222 22234454443221
Q ss_pred eecCchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhh
Q psy6275 249 IVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMA 328 (391)
Q Consensus 249 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~ 328 (391)
.++...+...+......++||||+|++.|+.+++.|.
T Consensus 242 -------------------------------------------~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~ 278 (572)
T PRK04537 242 -------------------------------------------EEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLE 278 (572)
T ss_pred -------------------------------------------HHHHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHH
Confidence 0223355556666666799999999999999999999
Q ss_pred ccCCCC--------hHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhcc
Q psy6275 329 KLNFNE--------TEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHH 377 (391)
Q Consensus 329 ~~g~~~--------~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h 377 (391)
+.|+.+ ..+|..+++.|++ ...+|++| +++++|||++.
T Consensus 279 ~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaT-----------dv~arGIDip~ 325 (572)
T PRK04537 279 RHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVAT-----------DVAARGLHIDG 325 (572)
T ss_pred HcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEe-----------hhhhcCCCccC
Confidence 887664 3678888888887 66778877 49999999984
|
|
| >KOG0343|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=303.92 Aligned_cols=283 Identities=20% Similarity=0.195 Sum_probs=237.7
Q ss_pred CCCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc-------CCeEEEE
Q psy6275 35 PPDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ-------SQRVIYT 106 (391)
Q Consensus 35 ~~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~-------~~~vlvl 106 (391)
+..|..++++....+.|++.+|. +|.+|+++||..+.|++++..|.||||||++|++|+++.+-+ |--+|||
T Consensus 68 ~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalII 147 (758)
T KOG0343|consen 68 IKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALII 147 (758)
T ss_pred hhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEe
Confidence 34789999999999999999996 999999999999999999999999999999999999998843 5579999
Q ss_pred cccHHHHHHHHHHHHHhcc----cceeeeCCcccC------CCCCEEEEcHHHHHHHHhcCcc-ccCccceEEEeccccc
Q psy6275 107 TPIKALSNQKYREFEEQFK----DVGLITGDVTIN------PSSSCLIMTTEILRNMLYRGSE-ITREVGWVIFDEIHYM 175 (391)
Q Consensus 107 ~P~~~L~~q~~~~~~~~~~----~v~~~~g~~~~~------~~~~I~v~Tp~~l~~~l~~~~~-~l~~~~~lViDE~h~~ 175 (391)
.|||+|+.|++..+.+.++ ..|++.|+.... .+.+|+||||++|++++..... .-.++.++|+||||++
T Consensus 148 SPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~ 227 (758)
T KOG0343|consen 148 SPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRM 227 (758)
T ss_pred cchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHH
Confidence 9999999999999999987 678888887753 3679999999999999998764 4568999999999999
Q ss_pred CccccchhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHHhccccCCCeeEeee----CCCCcCceEeeccCCCCCeeeee
Q psy6275 176 RDKERGYVWEETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVYT----DYRPTPLQHYLFPNGGDGIHLIV 250 (391)
Q Consensus 176 ~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~~~----~~~~~~i~~~~~~~~~~~~~~~v 250 (391)
++++|...++.|+..+|..+|.++||||.... .++++. ...+|.++-.- ...|..++|+++.++..
T Consensus 228 LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRL---sL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~------ 298 (758)
T KOG0343|consen 228 LDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARL---SLKDPVYVSVHENAVAATPSNLQQSYVIVPLE------ 298 (758)
T ss_pred HHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHh---hcCCCcEEEEeccccccChhhhhheEEEEehh------
Confidence 99999999999999999999999999998876 667664 34566555433 34566788888876532
Q ss_pred cCchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhcc
Q psy6275 251 DDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKL 330 (391)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~ 330 (391)
+++..|...+..+...++|||++|.+++..+++.++++
T Consensus 299 ------------------------------------------~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rl 336 (758)
T KOG0343|consen 299 ------------------------------------------DKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRL 336 (758)
T ss_pred ------------------------------------------hHHHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhc
Confidence 55678888888888889999999999999999999986
Q ss_pred ----------CCCChHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhccCC
Q psy6275 331 ----------NFNETEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHGV 379 (391)
Q Consensus 331 ----------g~~~~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~~ 379 (391)
|-..+..|-.+...|-. ...+|.+| |+.+||+||++++
T Consensus 337 rpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~T-----------Dv~aRGLDFpaVd 385 (758)
T KOG0343|consen 337 RPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCT-----------DVAARGLDFPAVD 385 (758)
T ss_pred CCCCceeeeccchhHHHHHHHHHHHHHhcceEEEee-----------hhhhccCCCcccc
Confidence 22234566666666666 44566666 5999999998765
|
|
| >KOG0338|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=302.25 Aligned_cols=282 Identities=19% Similarity=0.238 Sum_probs=228.0
Q ss_pred CCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc------CCeEEEEcc
Q psy6275 36 PDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ------SQRVIYTTP 108 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~------~~~vlvl~P 108 (391)
.+|..++|+..+++.+..+||. |||+|.++||..+-|+++..+|.||||||.+|.+|++..+-- ..|||||+|
T Consensus 181 ~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~P 260 (691)
T KOG0338|consen 181 ESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVP 260 (691)
T ss_pred hhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEec
Confidence 3788999999999999999997 999999999999999999999999999999999999998732 359999999
Q ss_pred cHHHHHHHHHHHHHhcc----cceeeeCCccc-------CCCCCEEEEcHHHHHHHHhcCcc-ccCccceEEEecccccC
Q psy6275 109 IKALSNQKYREFEEQFK----DVGLITGDVTI-------NPSSSCLIMTTEILRNMLYRGSE-ITREVGWVIFDEIHYMR 176 (391)
Q Consensus 109 ~~~L~~q~~~~~~~~~~----~v~~~~g~~~~-------~~~~~I~v~Tp~~l~~~l~~~~~-~l~~~~~lViDE~h~~~ 176 (391)
||+|+.|++...+.+.. .+++..|+..+ ...++|+|+||+++.+++.+.+. .+.++.++|+||||+|+
T Consensus 261 TRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRML 340 (691)
T KOG0338|consen 261 TRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRML 340 (691)
T ss_pred cHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHH
Confidence 99999999999888876 67888898875 45799999999999999988754 68899999999999999
Q ss_pred ccccchhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHHhccccCCCeeEeeeCCCCc--CceEeeccCCCCCeeeeecCc
Q psy6275 177 DKERGYVWEETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVYTDYRPT--PLQHYLFPNGGDGIHLIVDDN 253 (391)
Q Consensus 177 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~~~~~~~~--~i~~~~~~~~~~~~~~~v~~~ 253 (391)
+.+|...+..|+...+.++|.++||||+... ++++. .....|+.++....... .+.+-++.+-.++
T Consensus 341 eegFademnEii~lcpk~RQTmLFSATMteeVkdL~s---lSL~kPvrifvd~~~~~a~~LtQEFiRIR~~r-------- 409 (691)
T KOG0338|consen 341 EEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLAS---LSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKR-------- 409 (691)
T ss_pred HHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHH---hhcCCCeEEEeCCccccchhhhHHHheecccc--------
Confidence 9999999999999999999999999999876 66666 34567888887765433 3444444221110
Q ss_pred hhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCC
Q psy6275 254 KFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFN 333 (391)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~ 333 (391)
.+-+ +..+..++..+- ...+|||+.|++.|..+.-.|--+|+.
T Consensus 410 -------------------------------e~dR---ea~l~~l~~rtf---~~~~ivFv~tKk~AHRl~IllGLlgl~ 452 (691)
T KOG0338|consen 410 -------------------------------EGDR---EAMLASLITRTF---QDRTIVFVRTKKQAHRLRILLGLLGLK 452 (691)
T ss_pred -------------------------------cccc---HHHHHHHHHHhc---ccceEEEEehHHHHHHHHHHHHHhhch
Confidence 0000 011222322221 357999999999999999999888777
Q ss_pred Ch--------HHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhc
Q psy6275 334 ET--------EEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIH 376 (391)
Q Consensus 334 ~~--------~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~ 376 (391)
+. ..|-...+.|++ .+++|++|| +.+||+||.
T Consensus 453 agElHGsLtQ~QRlesL~kFk~~eidvLiaTD-----------vAsRGLDI~ 493 (691)
T KOG0338|consen 453 AGELHGSLTQEQRLESLEKFKKEEIDVLIATD-----------VASRGLDIE 493 (691)
T ss_pred hhhhcccccHHHHHHHHHHHHhccCCEEEEec-----------hhhccCCcc
Confidence 65 456666777777 789999885 999999984
|
|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=310.34 Aligned_cols=281 Identities=21% Similarity=0.215 Sum_probs=223.0
Q ss_pred CCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc-------CCeEEEEcc
Q psy6275 37 DLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ-------SQRVIYTTP 108 (391)
Q Consensus 37 ~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~-------~~~vlvl~P 108 (391)
+|+.+++++.+.+.+.+.||. |+++|.++++.+.++++++++||||+|||++|++|+++.+.. +.++||++|
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~P 81 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTP 81 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECC
Confidence 578899999999999999997 999999999999999999999999999999999999987732 468999999
Q ss_pred cHHHHHHHHHHHHHhcc----cceeeeCCccc-------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCc
Q psy6275 109 IKALSNQKYREFEEQFK----DVGLITGDVTI-------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRD 177 (391)
Q Consensus 109 ~~~L~~q~~~~~~~~~~----~v~~~~g~~~~-------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~ 177 (391)
|++|+.|+++.+..+.. .+..++|+... ...++|+|+||+++++++......++++++||+||||++++
T Consensus 82 t~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~ 161 (434)
T PRK11192 82 TRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLD 161 (434)
T ss_pred cHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhC
Confidence 99999999999888866 56678887653 34678999999999999988777788999999999999999
Q ss_pred cccchhHHHHHHHhCCCCcEEEEcccCCCh--HHHHHHhccccCCCeeEeeeCCCC--cCceEeeccCCCCCeeeeecCc
Q psy6275 178 KERGYVWEETLILLSDNVRFVFLSATIPNA--SQFAQWVSHLHHQPCHVVYTDYRP--TPLQHYLFPNGGDGIHLIVDDN 253 (391)
Q Consensus 178 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~--~~~~~~l~~~~~~~~~v~~~~~~~--~~i~~~~~~~~~~~~~~~v~~~ 253 (391)
+++...+..+...++...|+++||||++.. .++..++ ...+..+....... ..+.++++.++..
T Consensus 162 ~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~i~~~~~~~~~~--------- 229 (434)
T PRK11192 162 MGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERL---LNDPVEVEAEPSRRERKKIHQWYYRADDL--------- 229 (434)
T ss_pred CCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHH---ccCCEEEEecCCcccccCceEEEEEeCCH---------
Confidence 999999999988888889999999999753 5555554 33454443322221 2344444432210
Q ss_pred hhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCC
Q psy6275 254 KFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFN 333 (391)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~ 333 (391)
..+...+...+......++||||+++.+|+.++..|...|+.
T Consensus 230 --------------------------------------~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~ 271 (434)
T PRK11192 230 --------------------------------------EHKTALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKAGIN 271 (434)
T ss_pred --------------------------------------HHHHHHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhCCCC
Confidence 012234444454445679999999999999999999987765
Q ss_pred C--------hHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhccC
Q psy6275 334 E--------TEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHG 378 (391)
Q Consensus 334 ~--------~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~ 378 (391)
+ ..+|..+.+.|++ .+.+|++|| ++++|||+++.
T Consensus 272 ~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd-----------~~~~GiDip~v 314 (434)
T PRK11192 272 CCYLEGEMVQAKRNEAIKRLTDGRVNVLVATD-----------VAARGIDIDDV 314 (434)
T ss_pred EEEecCCCCHHHHHHHHHHHhCCCCcEEEEcc-----------ccccCccCCCC
Confidence 4 3678888888877 667777774 99999999754
|
|
| >KOG0328|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-40 Score=284.07 Aligned_cols=291 Identities=18% Similarity=0.252 Sum_probs=241.2
Q ss_pred eeccCCCCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh---cCCeEEE
Q psy6275 30 HEVALPPDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK---QSQRVIY 105 (391)
Q Consensus 30 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~---~~~~vlv 105 (391)
+.+...++|+.++|.+++++.+..+||+ |..+|+.|++.+.+|+|++..|..|+|||.+|.+.+++.+. +..++++
T Consensus 21 ~~~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~li 100 (400)
T KOG0328|consen 21 EKVKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALI 100 (400)
T ss_pred cCcccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccceeeEEE
Confidence 3445567899999999999999999998 99999999999999999999999999999999888888764 3468999
Q ss_pred EcccHHHHHHHHHHHHHhcc----cceeeeCCcccC-------CCCCEEEEcHHHHHHHHhcCccccCccceEEEecccc
Q psy6275 106 TTPIKALSNQKYREFEEQFK----DVGLITGDVTIN-------PSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHY 174 (391)
Q Consensus 106 l~P~~~L~~q~~~~~~~~~~----~v~~~~g~~~~~-------~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~ 174 (391)
+.|||+|+.|+.+.+..+.. ++..+.|+.... ...+++.+||+++++++.++...-+.++++|+||||.
T Consensus 101 lsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDe 180 (400)
T KOG0328|consen 101 LSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADE 180 (400)
T ss_pred ecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccHHH
Confidence 99999999999999999887 344466766643 3578999999999999999888888999999999999
Q ss_pred cCccccchhHHHHHHHhCCCCcEEEEcccCCChHHHHHHhccccCCCeeEeeeCCCCc--CceEeeccCCCCCeeeeecC
Q psy6275 175 MRDKERGYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPT--PLQHYLFPNGGDGIHLIVDD 252 (391)
Q Consensus 175 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~~~--~i~~~~~~~~~~~~~~~v~~ 252 (391)
|++.+++..+..+.+.+|++.|++++|||+|.. +.+....++.+|+.+.......+ .+++|++.+...+
T Consensus 181 mL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~e--ilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~Ee------- 251 (400)
T KOG0328|consen 181 MLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHE--ILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEE------- 251 (400)
T ss_pred HHHhhHHHHHHHHHHhCCCCceEEEEeccCcHH--HHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhh-------
Confidence 999999999999999999999999999999876 33444456778888877655443 5889988766432
Q ss_pred chhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCC
Q psy6275 253 NKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNF 332 (391)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~ 332 (391)
| +...|..++..-.-.+.+|||||++.++.|.+.|++..+
T Consensus 252 --w--------------------------------------KfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~nf 291 (400)
T KOG0328|consen 252 --W--------------------------------------KFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANF 291 (400)
T ss_pred --h--------------------------------------hHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhhCc
Confidence 1 123445555555567899999999999999999998655
Q ss_pred C--------ChHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhccCCC
Q psy6275 333 N--------ETEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHGVK 380 (391)
Q Consensus 333 ~--------~~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~~~ 380 (391)
. ..++|+.++..|+. ..++|++|| +-+||||+..+++
T Consensus 292 tVssmHGDm~qkERd~im~dFRsg~SrvLitTD-----------VwaRGiDv~qVsl 337 (400)
T KOG0328|consen 292 TVSSMHGDMEQKERDKIMNDFRSGKSRVLITTD-----------VWARGIDVQQVSL 337 (400)
T ss_pred eeeeccCCcchhHHHHHHHHhhcCCceEEEEec-----------hhhccCCcceeEE
Confidence 4 34889999999988 456777774 8999999987665
|
|
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=310.36 Aligned_cols=279 Identities=19% Similarity=0.207 Sum_probs=214.3
Q ss_pred CCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh----------cCCeEEE
Q psy6275 37 DLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK----------QSQRVIY 105 (391)
Q Consensus 37 ~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~----------~~~~vlv 105 (391)
+|..+++++.+...+...||. |||+|.++|+.+++|+|++++||||||||++|++|++..+. .++++||
T Consensus 122 ~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLI 201 (518)
T PLN00206 122 SFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMV 201 (518)
T ss_pred CHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEE
Confidence 677788999999999999997 99999999999999999999999999999999999987652 3578999
Q ss_pred EcccHHHHHHHHHHHHHhcc----cceeeeCCcc-------cCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccc
Q psy6275 106 TTPIKALSNQKYREFEEQFK----DVGLITGDVT-------INPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHY 174 (391)
Q Consensus 106 l~P~~~L~~q~~~~~~~~~~----~v~~~~g~~~-------~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~ 174 (391)
++||++|+.|+.+.++.+.. .+..+.|+.. .....+|+|+||+++.+++.+....++++++||+||||+
T Consensus 202 L~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ 281 (518)
T PLN00206 202 LTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDC 281 (518)
T ss_pred EeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHH
Confidence 99999999999999888765 2333445443 234579999999999999988888899999999999999
Q ss_pred cCccccchhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHHhccccCCCeeEeeeCC-CC-cCceEeeccCCCCCeeeeec
Q psy6275 175 MRDKERGYVWEETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVYTDY-RP-TPLQHYLFPNGGDGIHLIVD 251 (391)
Q Consensus 175 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~~~~~-~~-~~i~~~~~~~~~~~~~~~v~ 251 (391)
|+++++...+..++..++ +.|++++|||+++. +.++.++. .++..+..... .+ ..+.+.++.+...
T Consensus 282 ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~---~~~~~i~~~~~~~~~~~v~q~~~~~~~~------- 350 (518)
T PLN00206 282 MLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLA---KDIILISIGNPNRPNKAVKQLAIWVETK------- 350 (518)
T ss_pred HhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhC---CCCEEEEeCCCCCCCcceeEEEEeccch-------
Confidence 999888888888887775 58999999999876 55666543 34444332221 11 2344444433211
Q ss_pred CchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHc--CCCcEEEEEcchhhHHHHHHHhhc
Q psy6275 252 DNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMER--NLAPVIVFSFSKKDCEIYAMQMAK 329 (391)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~iIF~~t~~~~~~la~~L~~ 329 (391)
++...+.+.+... ...++||||+|+..|+.++..|..
T Consensus 351 -----------------------------------------~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~ 389 (518)
T PLN00206 351 -----------------------------------------QKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITV 389 (518)
T ss_pred -----------------------------------------hHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhh
Confidence 1122344444332 135899999999999999999975
Q ss_pred -cCCC--------ChHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhccC
Q psy6275 330 -LNFN--------ETEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHG 378 (391)
Q Consensus 330 -~g~~--------~~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~ 378 (391)
.|+. ..++|..+.+.|++ ...+|++|| +++||||++++
T Consensus 390 ~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTd-----------vl~rGiDip~v 437 (518)
T PLN00206 390 VTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATG-----------VLGRGVDLLRV 437 (518)
T ss_pred ccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEec-----------HhhccCCcccC
Confidence 3443 34778888888887 667777774 99999999764
|
|
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=319.89 Aligned_cols=303 Identities=23% Similarity=0.379 Sum_probs=224.2
Q ss_pred CcccccccccCCCCccCCCC-CcHHHHHHHHH-HhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHH
Q psy6275 38 LEYQPLAQSKEKPAREYPFV-LDPFQKEAILC-IENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQ 115 (391)
Q Consensus 38 ~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~-i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q 115 (391)
|+.+++++.+...+...||. |+|+|.+|++. +.+++|++++||||||||++|.+++++.+.++++++|++|+++|+.|
T Consensus 3 ~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~~~kal~i~P~raLa~q 82 (737)
T PRK02362 3 IAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIARGGKALYIVPLRALASE 82 (737)
T ss_pred hhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHH
Confidence 56778899999999999997 99999999997 78899999999999999999999999998889999999999999999
Q ss_pred HHHHHHHhcc---cceeeeCCcccC----CCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHH
Q psy6275 116 KYREFEEQFK---DVGLITGDVTIN----PSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETL 188 (391)
Q Consensus 116 ~~~~~~~~~~---~v~~~~g~~~~~----~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~ 188 (391)
.+..|+.+.. +++.++|+...+ .+++|+|+||+++..++.+....+++++++|+||+|.+.+.+++..++.++
T Consensus 83 ~~~~~~~~~~~g~~v~~~tGd~~~~~~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~rg~~le~il 162 (737)
T PRK02362 83 KFEEFERFEELGVRVGISTGDYDSRDEWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANRGPTLEVTL 162 (737)
T ss_pred HHHHHHHhhcCCCEEEEEeCCcCccccccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcchHHHHHHH
Confidence 9999998632 677888877644 357999999999999888766678899999999999999888999999887
Q ss_pred HHh---CCCCcEEEEcccCCChHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHH
Q psy6275 189 ILL---SDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMN 265 (391)
Q Consensus 189 ~~~---~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 265 (391)
..+ ..+.|++++|||+++..++++|++.. .+....+|.++...++..+. +.. ... ..
T Consensus 163 ~rl~~~~~~~qii~lSATl~n~~~la~wl~~~------~~~~~~rpv~l~~~v~~~~~--~~~-------~~~-----~~ 222 (737)
T PRK02362 163 AKLRRLNPDLQVVALSATIGNADELADWLDAE------LVDSEWRPIDLREGVFYGGA--IHF-------DDS-----QR 222 (737)
T ss_pred HHHHhcCCCCcEEEEcccCCCHHHHHHHhCCC------cccCCCCCCCCeeeEecCCe--ecc-------ccc-----cc
Confidence 665 46799999999999999999999742 24556778777765543211 100 000 00
Q ss_pred HhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCC--ChHHHHHHHH
Q psy6275 266 VLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFN--ETEEVKLVDD 343 (391)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~--~~~~r~~~~~ 343 (391)
.+. ..........+.+.+. .++++||||+|+++|+.+|..|.+.... ...++....+
T Consensus 223 ~~~-------------------~~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~ 281 (737)
T PRK02362 223 EVE-------------------VPSKDDTLNLVLDTLE--EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAE 281 (737)
T ss_pred cCC-------------------CccchHHHHHHHHHHH--cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHH
Confidence 000 0000112223333333 3469999999999999999999865321 1122222222
Q ss_pred HHHHHhhhcchhhccCcchHhHHHHHHhhhhhccCCCCccccc
Q psy6275 344 VFSNAMDVLSEEDRKLPQIENILPLLRRGIGIHHGVKPYGLWQ 386 (391)
Q Consensus 344 ~~~~~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~~~~~~~r~ 386 (391)
..+ .+.....++ ....+.+++..||++|||||+..+|+
T Consensus 282 ~~~-~l~~~~~~~----~~~~L~~~l~~gva~hHagl~~~eR~ 319 (737)
T PRK02362 282 LAE-EIREVSDTE----TSKDLADCVAKGAAFHHAGLSREHRE 319 (737)
T ss_pred HHH-HHHhccCcc----ccHHHHHHHHhCEEeecCCCCHHHHH
Confidence 211 111111111 23567889999999999999998875
|
|
| >KOG0342|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-38 Score=290.22 Aligned_cols=283 Identities=20% Similarity=0.227 Sum_probs=231.7
Q ss_pred CCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh-------cCCeEEEEcc
Q psy6275 37 DLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK-------QSQRVIYTTP 108 (391)
Q Consensus 37 ~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~-------~~~~vlvl~P 108 (391)
.|+...|++...+.++++||+ +|++|+..++.++.|+++++.|.||+|||++|++|+++++. ++..++|++|
T Consensus 83 ~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~P 162 (543)
T KOG0342|consen 83 RFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICP 162 (543)
T ss_pred HhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecc
Confidence 467788999999999999998 99999999999999999999999999999999999999873 3568999999
Q ss_pred cHHHHHHHHHHHHHhcc-----cceeeeCCccc-------CCCCCEEEEcHHHHHHHHhcCcc-ccCccceEEEeccccc
Q psy6275 109 IKALSNQKYREFEEQFK-----DVGLITGDVTI-------NPSSSCLIMTTEILRNMLYRGSE-ITREVGWVIFDEIHYM 175 (391)
Q Consensus 109 ~~~L~~q~~~~~~~~~~-----~v~~~~g~~~~-------~~~~~I~v~Tp~~l~~~l~~~~~-~l~~~~~lViDE~h~~ 175 (391)
||+|+.|++.+.+++.. .++++.|+... ...++|+|+|||+|++++.+... ..+.++++|+||||++
T Consensus 163 TRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrl 242 (543)
T KOG0342|consen 163 TRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRL 242 (543)
T ss_pred cHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecchhh
Confidence 99999999999998876 57778887764 23689999999999999998665 4567889999999999
Q ss_pred CccccchhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHHhccccCCCeeEeeeCCCCc----CceEeeccCCCCCeeeee
Q psy6275 176 RDKERGYVWEETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVYTDYRPT----PLQHYLFPNGGDGIHLIV 250 (391)
Q Consensus 176 ~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~~~~~~~~----~i~~~~~~~~~~~~~~~v 250 (391)
++.+|...++.|+..++..+|.++||||.+.. ++++.. .+..++.++-..+.... .++|.++.++.+
T Consensus 243 Ld~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~--~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~------ 314 (543)
T KOG0342|consen 243 LDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARG--ALKRDPVFVNVDDGGERETHERLEQGYVVAPSD------ 314 (543)
T ss_pred hhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHH--hhcCCceEeecCCCCCcchhhcccceEEecccc------
Confidence 99999999999999999999999999999877 777765 23446666655544322 466755544432
Q ss_pred cCchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCC-CcEEEEEcchhhHHHHHHHhhc
Q psy6275 251 DDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNL-APVIVFSFSKKDCEIYAMQMAK 329 (391)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~iIF~~t~~~~~~la~~L~~ 329 (391)
..+..++..++++.. +++||||+|...+..+++.|+.
T Consensus 315 ------------------------------------------~~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~ 352 (543)
T KOG0342|consen 315 ------------------------------------------SRFSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNY 352 (543)
T ss_pred ------------------------------------------chHHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhh
Confidence 234567777777654 8999999999999999999998
Q ss_pred cCCCCh--------HHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhccCCC
Q psy6275 330 LNFNET--------EEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHGVK 380 (391)
Q Consensus 330 ~g~~~~--------~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~~~ 380 (391)
..+++- ..|..+...|.+ ...+|++| |+.|||+||+++..
T Consensus 353 ~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cT-----------DVaARGlD~P~V~~ 401 (543)
T KOG0342|consen 353 IDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCT-----------DVAARGLDIPDVDW 401 (543)
T ss_pred cCCchhhhhcCCcccccchHHHHHhhcccceEEec-----------chhhccCCCCCceE
Confidence 766653 557777777777 44555555 59999999998653
|
|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-37 Score=304.63 Aligned_cols=280 Identities=18% Similarity=0.193 Sum_probs=217.9
Q ss_pred CCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc----------CCeEE
Q psy6275 36 PDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ----------SQRVI 104 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~----------~~~vl 104 (391)
..|..+.+++.+...+.+.||. |+++|.++|+.+.+|+|+++++|||||||++|++|+++.+.. ..++|
T Consensus 87 ~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aL 166 (475)
T PRK01297 87 TRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRAL 166 (475)
T ss_pred CCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEE
Confidence 4678889999999999999997 999999999999999999999999999999999999987743 46899
Q ss_pred EEcccHHHHHHHHHHHHHhcc----cceeeeCCccc--------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecc
Q psy6275 105 YTTPIKALSNQKYREFEEQFK----DVGLITGDVTI--------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEI 172 (391)
Q Consensus 105 vl~P~~~L~~q~~~~~~~~~~----~v~~~~g~~~~--------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~ 172 (391)
|++||++|+.|+++.++.+.+ .+..++|+... ...++|+|+||++|+.++.+....++++++||+||+
T Consensus 167 il~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEa 246 (475)
T PRK01297 167 IIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEA 246 (475)
T ss_pred EEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechH
Confidence 999999999999999998865 45556776442 235799999999999988888888999999999999
Q ss_pred cccCccccchhHHHHHHHhCC--CCcEEEEcccCCCh-HHHHHHhccccCCCeeEeeeCCC--CcCceEeeccCCCCCee
Q psy6275 173 HYMRDKERGYVWEETLILLSD--NVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVYTDYR--PTPLQHYLFPNGGDGIH 247 (391)
Q Consensus 173 h~~~~~~~~~~~~~i~~~~~~--~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~~~~~~--~~~i~~~~~~~~~~~~~ 247 (391)
|.+.+.++...+..++...+. ..|++++|||++.. ..+...+ ...+..+...... ...++++++.+...
T Consensus 247 h~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--- 320 (475)
T PRK01297 247 DRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQW---TTDPAIVEIEPENVASDTVEQHVYAVAGS--- 320 (475)
T ss_pred HHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHh---ccCCEEEEeccCcCCCCcccEEEEEecch---
Confidence 999988887788888887753 57999999998765 4444432 2344443222211 22344444432211
Q ss_pred eeecCchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHh
Q psy6275 248 LIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQM 327 (391)
Q Consensus 248 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L 327 (391)
++...+...+......++||||++++.|+.+++.|
T Consensus 321 ---------------------------------------------~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L 355 (475)
T PRK01297 321 ---------------------------------------------DKYKLLYNLVTQNPWERVMVFANRKDEVRRIEERL 355 (475)
T ss_pred ---------------------------------------------hHHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHH
Confidence 11224445555555679999999999999999999
Q ss_pred hccCCCC--------hHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhcc
Q psy6275 328 AKLNFNE--------TEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHH 377 (391)
Q Consensus 328 ~~~g~~~--------~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h 377 (391)
...|+.+ .++|..+.+.|++ .+.+|++|+ ++++|||++.
T Consensus 356 ~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~-----------~l~~GIDi~~ 403 (475)
T PRK01297 356 VKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATD-----------VAGRGIHIDG 403 (475)
T ss_pred HHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEcc-----------ccccCCcccC
Confidence 8776543 4778888888876 667778774 9999999974
|
|
| >KOG0345|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=285.72 Aligned_cols=278 Identities=19% Similarity=0.213 Sum_probs=225.5
Q ss_pred ccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc------C--CeEEEEcccHHH
Q psy6275 42 PLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ------S--QRVIYTTPIKAL 112 (391)
Q Consensus 42 ~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~------~--~~vlvl~P~~~L 112 (391)
+|.+.+...+...||+ +||+|..+||.+++++++++-|+||||||++|++|++..+-+ + .-+||++|||||
T Consensus 12 ~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTREL 91 (567)
T KOG0345|consen 12 PLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTREL 91 (567)
T ss_pred CccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHH
Confidence 4558899999999998 999999999999999999999999999999999999998821 2 268999999999
Q ss_pred HHHHHHHHHHhcc-----cceeeeCCcccC--------CCCCEEEEcHHHHHHHHhcCcc--ccCccceEEEecccccCc
Q psy6275 113 SNQKYREFEEQFK-----DVGLITGDVTIN--------PSSSCLIMTTEILRNMLYRGSE--ITREVGWVIFDEIHYMRD 177 (391)
Q Consensus 113 ~~q~~~~~~~~~~-----~v~~~~g~~~~~--------~~~~I~v~Tp~~l~~~l~~~~~--~l~~~~~lViDE~h~~~~ 177 (391)
+.|+.+....+.. ++.++.|+..+. ..++|+|+|||+|.+++.+... .+++++++|+||||++++
T Consensus 92 a~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLld 171 (567)
T KOG0345|consen 92 ARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLD 171 (567)
T ss_pred HHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhc
Confidence 9999999888876 367788886653 3678999999999999987544 355999999999999999
Q ss_pred cccchhHHHHHHHhCCCCcEEEEcccCCChHHHHHHhccccCCCeeEeeeCCC----CcCceEeeccCCCCCeeeeecCc
Q psy6275 178 KERGYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYR----PTPLQHYLFPNGGDGIHLIVDDN 253 (391)
Q Consensus 178 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~----~~~i~~~~~~~~~~~~~~~v~~~ 253 (391)
++|...++.|++.+|+.++.-+||||...+ +.+.......+|+.+.+.... |..+..++..+..
T Consensus 172 mgFe~~~n~ILs~LPKQRRTGLFSATq~~~--v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a---------- 239 (567)
T KOG0345|consen 172 MGFEASVNTILSFLPKQRRTGLFSATQTQE--VEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEA---------- 239 (567)
T ss_pred ccHHHHHHHHHHhcccccccccccchhhHH--HHHHHHhhccCceeeeecccccccCchhhcceeeEecH----------
Confidence 999999999999999999999999998765 333333556778777655443 4446655554432
Q ss_pred hhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhcc---
Q psy6275 254 KFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKL--- 330 (391)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~--- 330 (391)
+.+...++.++.....+++|||.+|...++.....|...
T Consensus 240 --------------------------------------~eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~ 281 (567)
T KOG0345|consen 240 --------------------------------------DEKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKK 281 (567)
T ss_pred --------------------------------------HHHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCC
Confidence 145678999999988899999999999999999999765
Q ss_pred -------CCCChHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhccCCC
Q psy6275 331 -------NFNETEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHGVK 380 (391)
Q Consensus 331 -------g~~~~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~~~ 380 (391)
|-.....|..+.+.|.+ .-.+|.+| |+++|||||+..++
T Consensus 282 ~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~T-----------DVaARGlDip~iD~ 328 (567)
T KOG0345|consen 282 REIFSIHGKMSQKARAKVLEAFRKLSNGVLFCT-----------DVAARGLDIPGIDL 328 (567)
T ss_pred CcEEEecchhcchhHHHHHHHHHhccCceEEee-----------hhhhccCCCCCceE
Confidence 33334668888888877 44555555 69999999975543
|
|
| >KOG0326|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=280.63 Aligned_cols=282 Identities=18% Similarity=0.211 Sum_probs=230.9
Q ss_pred CCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc---CCeEEEEcccHHH
Q psy6275 37 DLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ---SQRVIYTTPIKAL 112 (391)
Q Consensus 37 ~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~---~~~vlvl~P~~~L 112 (391)
.|+.+.|.++++..+.+.||+ |.|+|.++||.++.|++++..|..|+|||.+|++|+++.+.. .-+.+|++|||+|
T Consensus 86 efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrel 165 (459)
T KOG0326|consen 86 EFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTREL 165 (459)
T ss_pred cHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchh
Confidence 577788999999999999998 999999999999999999999999999999999999999854 4689999999999
Q ss_pred HHHHHHHHHHhcc----cceeeeCCcccCC-------CCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccc
Q psy6275 113 SNQKYREFEEQFK----DVGLITGDVTINP-------SSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERG 181 (391)
Q Consensus 113 ~~q~~~~~~~~~~----~v~~~~g~~~~~~-------~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~ 181 (391)
+.|+.+...++.+ .+.+.+|++.... ..+++|+||++++++..++...+++..++|+||||.+++..|.
T Consensus 166 ALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~~F~ 245 (459)
T KOG0326|consen 166 ALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSVDFQ 245 (459)
T ss_pred hHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhchhhh
Confidence 9999998888887 4556788877543 4689999999999999999989999999999999999999999
Q ss_pred hhHHHHHHHhCCCCcEEEEcccCCChHHHHHHhccccCCCeeEe-eeCCCCcCceEeeccCCCCCeeeeecCchhhhhch
Q psy6275 182 YVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVV-YTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNY 260 (391)
Q Consensus 182 ~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~-~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~ 260 (391)
..++.++..+|+++|++++|||+|-. +..++...+.+|..+- -....+..+.+|+-++...
T Consensus 246 ~~~e~li~~lP~~rQillySATFP~t--Vk~Fm~~~l~kPy~INLM~eLtl~GvtQyYafV~e~---------------- 307 (459)
T KOG0326|consen 246 PIVEKLISFLPKERQILLYSATFPLT--VKGFMDRHLKKPYEINLMEELTLKGVTQYYAFVEER---------------- 307 (459)
T ss_pred hHHHHHHHhCCccceeeEEecccchh--HHHHHHHhccCcceeehhhhhhhcchhhheeeechh----------------
Confidence 99999999999999999999999977 3444446666776553 3344556778777655422
Q ss_pred HHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCCh-----
Q psy6275 261 QVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNET----- 335 (391)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~~----- 335 (391)
.++.-|-.++.+-.-.+.||||||.+.+|.+|+.+.+.|+.|=
T Consensus 308 --------------------------------qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKITelGyscyyiHak 355 (459)
T KOG0326|consen 308 --------------------------------QKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYIHAK 355 (459)
T ss_pred --------------------------------hhhhhHHHHHHHhcccceEEEeccchHhHHHHHHHHhccchhhHHHHH
Confidence 1222233333444456899999999999999999999999874
Q ss_pred ---HHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhccCC
Q psy6275 336 ---EEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHGV 379 (391)
Q Consensus 336 ---~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~~ 379 (391)
+.|..+.+.|++ ..+.|+++ |++.||||+..++
T Consensus 356 M~Q~hRNrVFHdFr~G~crnLVct-----------DL~TRGIDiqavN 392 (459)
T KOG0326|consen 356 MAQEHRNRVFHDFRNGKCRNLVCT-----------DLFTRGIDIQAVN 392 (459)
T ss_pred HHHhhhhhhhhhhhccccceeeeh-----------hhhhcccccceee
Confidence 556666666666 44555555 6999999997543
|
|
| >KOG0333|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=288.28 Aligned_cols=284 Identities=20% Similarity=0.209 Sum_probs=239.2
Q ss_pred CCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc------------CCe
Q psy6275 36 PDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ------------SQR 102 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~------------~~~ 102 (391)
.+|.+.+++.++++.+...||. |+|+|.++||..+.++|+|..|.||||||.+|++|++.++.. ++.
T Consensus 245 rnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpy 324 (673)
T KOG0333|consen 245 RNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPY 324 (673)
T ss_pred cChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCce
Confidence 4788899999999999999997 999999999999999999999999999999999999888742 789
Q ss_pred EEEEcccHHHHHHHHHHHHHhcc----cceeeeCCccc-------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEec
Q psy6275 103 VIYTTPIKALSNQKYREFEEQFK----DVGLITGDVTI-------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDE 171 (391)
Q Consensus 103 vlvl~P~~~L~~q~~~~~~~~~~----~v~~~~g~~~~-------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE 171 (391)
.++++|||+|+.|+..+-.++.. ++..+.|+... ...+.|+|+||++|.+.+.+...-++...++|+||
T Consensus 325 aiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvlde 404 (673)
T KOG0333|consen 325 AIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDE 404 (673)
T ss_pred eeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccc
Confidence 99999999999999999888876 34345565543 44689999999999999888877788999999999
Q ss_pred ccccCccccchhHHHHHHHhCC-----------------------C--CcEEEEcccCCCh-HHHHHHhccccCCCeeEe
Q psy6275 172 IHYMRDKERGYVWEETLILLSD-----------------------N--VRFVFLSATIPNA-SQFAQWVSHLHHQPCHVV 225 (391)
Q Consensus 172 ~h~~~~~~~~~~~~~i~~~~~~-----------------------~--~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~ 225 (391)
||+|.|++|.+.+..++..+|. + .|.++||||++.. ..++. .++.+|+.+.
T Consensus 405 adrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar---~ylr~pv~vt 481 (673)
T KOG0333|consen 405 ADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLAR---SYLRRPVVVT 481 (673)
T ss_pred hhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHH---HHhhCCeEEE
Confidence 9999999999999999988741 1 7899999999887 55555 5667888886
Q ss_pred eeC-CCCc-CceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHH
Q psy6275 226 YTD-YRPT-PLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIM 303 (391)
Q Consensus 226 ~~~-~~~~-~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 303 (391)
... +++. .++|.++.+..+ ++...|.+.+.
T Consensus 482 ig~~gk~~~rveQ~v~m~~ed------------------------------------------------~k~kkL~eil~ 513 (673)
T KOG0333|consen 482 IGSAGKPTPRVEQKVEMVSED------------------------------------------------EKRKKLIEILE 513 (673)
T ss_pred eccCCCCccchheEEEEecch------------------------------------------------HHHHHHHHHHH
Confidence 665 4444 578888765533 34567888888
Q ss_pred HcCCCcEEEEEcchhhHHHHHHHhhccCCCC--------hHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhh
Q psy6275 304 ERNLAPVIVFSFSKKDCEIYAMQMAKLNFNE--------TEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIG 374 (391)
Q Consensus 304 ~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~--------~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~ 374 (391)
.....++|||+|+++.|+.+|+.|.+.|+.+ .++|....+.|+. ..++|++|| +.+||||
T Consensus 514 ~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTD-----------vAgRGID 582 (673)
T KOG0333|consen 514 SNFDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATD-----------VAGRGID 582 (673)
T ss_pred hCCCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEec-----------ccccCCC
Confidence 8767799999999999999999999988776 3788888888888 668888885 9999999
Q ss_pred hccCCCC
Q psy6275 375 IHHGVKP 381 (391)
Q Consensus 375 ~~h~~~~ 381 (391)
|+.++|-
T Consensus 583 IpnVSlV 589 (673)
T KOG0333|consen 583 IPNVSLV 589 (673)
T ss_pred CCcccee
Confidence 9987763
|
|
| >KOG0346|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=282.17 Aligned_cols=292 Identities=16% Similarity=0.208 Sum_probs=229.1
Q ss_pred CCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh---------cCCeEEE
Q psy6275 36 PDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK---------QSQRVIY 105 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~---------~~~~vlv 105 (391)
.+|..++|++.+++.+.++||+ ||-+|+.|||.+++|+|++..|.||||||.+|++|+++.+- .+..++|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 5799999999999999999998 99999999999999999999999999999999999999772 3678999
Q ss_pred EcccHHHHHHHHHHHHHhcccce------eeeCCcc-------cCCCCCEEEEcHHHHHHHHhcCc-cccCccceEEEec
Q psy6275 106 TTPIKALSNQKYREFEEQFKDVG------LITGDVT-------INPSSSCLIMTTEILRNMLYRGS-EITREVGWVIFDE 171 (391)
Q Consensus 106 l~P~~~L~~q~~~~~~~~~~~v~------~~~g~~~-------~~~~~~I~v~Tp~~l~~~l~~~~-~~l~~~~~lViDE 171 (391)
++||++|+.|++..+.++...+. -+..++. .-..++|+|+||++++.++..+. ..+..+.++|+||
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDE 178 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDE 178 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEech
Confidence 99999999999999888765211 1222211 23468999999999999998877 6788999999999
Q ss_pred ccccCccccchhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHHhccccCCCeeEeeeCCC-C--cCceEeeccCCCCCee
Q psy6275 172 IHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVYTDYR-P--TPLQHYLFPNGGDGIH 247 (391)
Q Consensus 172 ~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~~~~~~-~--~~i~~~~~~~~~~~~~ 247 (391)
||.++.-++...+..+...+|+..|.++||||+.+. ..+.. .+..+|+..-..+.. + ..+.|+.+.+...
T Consensus 179 ADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKk---L~l~nPviLkl~e~el~~~dqL~Qy~v~cse~--- 252 (569)
T KOG0346|consen 179 ADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKK---LFLHNPVILKLTEGELPNPDQLTQYQVKCSEE--- 252 (569)
T ss_pred hhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHH---HhccCCeEEEeccccCCCcccceEEEEEeccc---
Confidence 999999899999999999999999999999999766 44444 345677766444333 2 3577777766532
Q ss_pred eeecCchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHc-CCCcEEEEEcchhhHHHHHHH
Q psy6275 248 LIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMER-NLAPVIVFSFSKKDCEIYAMQ 326 (391)
Q Consensus 248 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~iIF~~t~~~~~~la~~ 326 (391)
++...++.+++-+ =.+++|||+||.+.|-.|.-.
T Consensus 253 ---------------------------------------------DKflllyallKL~LI~gKsliFVNtIdr~YrLkLf 287 (569)
T KOG0346|consen 253 ---------------------------------------------DKFLLLYALLKLRLIRGKSLIFVNTIDRCYRLKLF 287 (569)
T ss_pred ---------------------------------------------hhHHHHHHHHHHHHhcCceEEEEechhhhHHHHHH
Confidence 2222222222221 135899999999999999999
Q ss_pred hhccCCCCh--------HHHHHHHHHHHH-HhhhcchhhccC------------------------cchHhHHHHHHhhh
Q psy6275 327 MAKLNFNET--------EEVKLVDDVFSN-AMDVLSEEDRKL------------------------PQIENILPLLRRGI 373 (391)
Q Consensus 327 L~~~g~~~~--------~~r~~~~~~~~~-~~~~l~~~d~~~------------------------~~~~~~~~~l~~GI 373 (391)
|...|+.+- +.|-.+.+.|+. ..+++++||... .+-.-...-++|||
T Consensus 288 LeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGI 367 (569)
T KOG0346|consen 288 LEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGI 367 (569)
T ss_pred HHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccc
Confidence 999888753 678888999988 558888888110 00113345789999
Q ss_pred hhccC
Q psy6275 374 GIHHG 378 (391)
Q Consensus 374 ~~~h~ 378 (391)
||||+
T Consensus 368 DF~~V 372 (569)
T KOG0346|consen 368 DFHHV 372 (569)
T ss_pred cchhe
Confidence 99986
|
|
| >KOG0335|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-37 Score=288.87 Aligned_cols=281 Identities=18% Similarity=0.222 Sum_probs=223.0
Q ss_pred CCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc-------------CCe
Q psy6275 37 DLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ-------------SQR 102 (391)
Q Consensus 37 ~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~-------------~~~ 102 (391)
+|+...+.+.+..+++..+|. |||+|+.+||.+..|++++++|+||||||.+|++|++..+.. .++
T Consensus 75 ~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~ 154 (482)
T KOG0335|consen 75 TFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPR 154 (482)
T ss_pred cccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCc
Confidence 778888888999999999997 999999999999999999999999999999999999988732 379
Q ss_pred EEEEcccHHHHHHHHHHHHHhcc----cceeeeCCccc-------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEec
Q psy6275 103 VIYTTPIKALSNQKYREFEEQFK----DVGLITGDVTI-------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDE 171 (391)
Q Consensus 103 vlvl~P~~~L~~q~~~~~~~~~~----~v~~~~g~~~~-------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE 171 (391)
++|++|||+|+.|++.+.+++.. +....+|+... ..+++|+|+||++|.+++..+...+++++++|+||
T Consensus 155 ~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDE 234 (482)
T KOG0335|consen 155 ALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDE 234 (482)
T ss_pred eEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEecc
Confidence 99999999999999999999876 45556776553 34689999999999999999999999999999999
Q ss_pred ccccCc-cccchhHHHHHHHhC----CCCcEEEEcccCCCh-HHHHHHhccccCCCee--EeeeCCCCcCceEeeccCCC
Q psy6275 172 IHYMRD-KERGYVWEETLILLS----DNVRFVFLSATIPNA-SQFAQWVSHLHHQPCH--VVYTDYRPTPLQHYLFPNGG 243 (391)
Q Consensus 172 ~h~~~~-~~~~~~~~~i~~~~~----~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~--v~~~~~~~~~i~~~~~~~~~ 243 (391)
||.|+| ++|++.++.++.... ...|.++||||+|.. ..++..+-. ...+. +-........+.+.+.++..
T Consensus 235 ADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~--~~yi~laV~rvg~~~~ni~q~i~~V~~ 312 (482)
T KOG0335|consen 235 ADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLK--DNYIFLAVGRVGSTSENITQKILFVNE 312 (482)
T ss_pred hHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhh--ccceEEEEeeeccccccceeEeeeecc
Confidence 999999 999999999998764 379999999999876 444443321 11222 22223344567777766553
Q ss_pred CCeeeeecCchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcC---------CCcEEEEE
Q psy6275 244 DGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERN---------LAPVIVFS 314 (391)
Q Consensus 244 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---------~~~~iIF~ 314 (391)
. ++...|+.++.... .++++|||
T Consensus 313 ~------------------------------------------------~kr~~Lldll~~~~~~~~~~~~~~e~tlvFv 344 (482)
T KOG0335|consen 313 M------------------------------------------------EKRSKLLDLLNKDDGPPSDGEPKWEKTLVFV 344 (482)
T ss_pred h------------------------------------------------hhHHHHHHHhhcccCCcccCCcccceEEEEe
Confidence 2 22234444444321 23899999
Q ss_pred cchhhHHHHHHHhhccCCCCh--------HHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhccC
Q psy6275 315 FSKKDCEIYAMQMAKLNFNET--------EEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHG 378 (391)
Q Consensus 315 ~t~~~~~~la~~L~~~g~~~~--------~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~ 378 (391)
.|++.|.+++..|...+++.. .+|......|++ ...++++| ++.+||+||.++
T Consensus 345 Et~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT-----------~VaaRGlDi~~V 406 (482)
T KOG0335|consen 345 ETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAPVLVAT-----------NVAARGLDIPNV 406 (482)
T ss_pred eccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcceEEEe-----------hhhhcCCCCCCC
Confidence 999999999999999988875 456666666666 45555555 699999999864
|
|
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=293.12 Aligned_cols=282 Identities=15% Similarity=0.219 Sum_probs=216.5
Q ss_pred CCCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh---cCCeEEEEcccH
Q psy6275 35 PPDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK---QSQRVIYTTPIK 110 (391)
Q Consensus 35 ~~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~---~~~~vlvl~P~~ 110 (391)
..+|+.+++++.+.+.+..+||+ |+++|.++++.+.+++++++.||||||||++|++|+++.+. .+.++||++|++
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~ 106 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTR 106 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCH
Confidence 36788999999999999999997 99999999999999999999999999999999999998875 357899999999
Q ss_pred HHHHHHHHHHHHhcc----cceeeeCCccc-------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccc
Q psy6275 111 ALSNQKYREFEEQFK----DVGLITGDVTI-------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKE 179 (391)
Q Consensus 111 ~L~~q~~~~~~~~~~----~v~~~~g~~~~-------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~ 179 (391)
+|+.|+.+.+..... .+..+.|+... ....+|+|+||+++...+.+....+++++++|+||+|++.+.+
T Consensus 107 ~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~~~ 186 (401)
T PTZ00424 107 ELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSRG 186 (401)
T ss_pred HHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHhcc
Confidence 999999998888775 23345555432 2347899999999999888877788999999999999998887
Q ss_pred cchhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHHhccccCCCeeEeeeCC--CCcCceEeeccCCCCCeeeeecCchhh
Q psy6275 180 RGYVWEETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVYTDY--RPTPLQHYLFPNGGDGIHLIVDDNKFK 256 (391)
Q Consensus 180 ~~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~~~~~--~~~~i~~~~~~~~~~~~~~~v~~~~~~ 256 (391)
+...+..++..++.+.|++++|||+++. ..+.. .+...+..+..... ....+.++++..+.. .
T Consensus 187 ~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~-- 252 (401)
T PTZ00424 187 FKGQIYDVFKKLPPDVQVALFSATMPNEILELTT---KFMRDPKRILVKKDELTLEGIRQFYVAVEKE---------E-- 252 (401)
T ss_pred hHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHH---HHcCCCEEEEeCCCCcccCCceEEEEecChH---------H--
Confidence 7777888888888899999999999875 33332 23334444332221 122344444322210 0
Q ss_pred hhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCC--
Q psy6275 257 EHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNE-- 334 (391)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~-- 334 (391)
.....+...+......++||||+|+++|+.+++.|...++.+
T Consensus 253 ------------------------------------~~~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~ 296 (401)
T PTZ00424 253 ------------------------------------WKFDTLCDLYETLTITQAIIYCNTRRKVDYLTKKMHERDFTVSC 296 (401)
T ss_pred ------------------------------------HHHHHHHHHHHhcCCCeEEEEecCcHHHHHHHHHHHHCCCcEEE
Confidence 011233344444455689999999999999999998875544
Q ss_pred ------hHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhcc
Q psy6275 335 ------TEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHH 377 (391)
Q Consensus 335 ------~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h 377 (391)
..+|..+.+.|++ .+++|++|+ ++++|||++.
T Consensus 297 ~h~~~~~~~R~~i~~~f~~g~~~vLvaT~-----------~l~~GiDip~ 335 (401)
T PTZ00424 297 MHGDMDQKDRDLIMREFRSGSTRVLITTD-----------LLARGIDVQQ 335 (401)
T ss_pred EeCCCCHHHHHHHHHHHHcCCCCEEEEcc-----------cccCCcCccc
Confidence 3678888888887 667778774 9999999863
|
|
| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-36 Score=308.08 Aligned_cols=297 Identities=26% Similarity=0.388 Sum_probs=217.3
Q ss_pred CcccccccccCCCCccCCCC-CcHHHHHHHHH-HhcCCcEEEEecCCcchHHHHHHHHHHHHh-cCCeEEEEcccHHHHH
Q psy6275 38 LEYQPLAQSKEKPAREYPFV-LDPFQKEAILC-IENNQSVLVSAHTSAGKTVVAEYAIASSLK-QSQRVIYTTPIKALSN 114 (391)
Q Consensus 38 ~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~-i~~~~~~li~apTGsGKT~~~~~~~~~~l~-~~~~vlvl~P~~~L~~ 114 (391)
|+.+++++.+.+.+++.||+ |+|+|.++++. +.+|+|+++++|||||||++|.+|+++.+. .+++++|++|+++|+.
T Consensus 3 ~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aLa~ 82 (720)
T PRK00254 3 VDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKALAE 82 (720)
T ss_pred HHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHH
Confidence 55677888999999999997 99999999986 789999999999999999999999988754 5789999999999999
Q ss_pred HHHHHHHHhcc---cceeeeCCcccC----CCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHH
Q psy6275 115 QKYREFEEQFK---DVGLITGDVTIN----PSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEET 187 (391)
Q Consensus 115 q~~~~~~~~~~---~v~~~~g~~~~~----~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i 187 (391)
|+++.+..+.. .+..++|+.... .+++|+|+||+++..++......+++++++|+||+|.+.+.+++..++.+
T Consensus 83 q~~~~~~~~~~~g~~v~~~~Gd~~~~~~~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~rg~~le~i 162 (720)
T PRK00254 83 EKYREFKDWEKLGLRVAMTTGDYDSTDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDRGATLEMI 162 (720)
T ss_pred HHHHHHHHHhhcCCEEEEEeCCCCCchhhhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccchHHHHHH
Confidence 99999886532 677788876543 35789999999999888777677899999999999999988899999999
Q ss_pred HHHhCCCCcEEEEcccCCChHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHh
Q psy6275 188 LILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVL 267 (391)
Q Consensus 188 ~~~~~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 267 (391)
+..+..+.|++++|||+++..++++|++.. .+....+|.++...++.... . ...... ...+..
T Consensus 163 l~~l~~~~qiI~lSATl~n~~~la~wl~~~------~~~~~~rpv~l~~~~~~~~~--~--~~~~~~--~~~~~~----- 225 (720)
T PRK00254 163 LTHMLGRAQILGLSATVGNAEELAEWLNAE------LVVSDWRPVKLRKGVFYQGF--L--FWEDGK--IERFPN----- 225 (720)
T ss_pred HHhcCcCCcEEEEEccCCCHHHHHHHhCCc------cccCCCCCCcceeeEecCCe--e--eccCcc--hhcchH-----
Confidence 999888899999999999999999998742 24456677776544332110 0 000000 000000
Q ss_pred hhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCC--CChHHHHHHHHHH
Q psy6275 268 ANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNF--NETEEVKLVDDVF 345 (391)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~--~~~~~r~~~~~~~ 345 (391)
.....+.+.+. .++++||||+||+.|+.+|..|.+... ....+...+.+..
T Consensus 226 -------------------------~~~~~~~~~i~--~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~ 278 (720)
T PRK00254 226 -------------------------SWESLVYDAVK--KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELA 278 (720)
T ss_pred -------------------------HHHHHHHHHHH--hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence 00112223333 246899999999999999999865321 0111111111111
Q ss_pred HHHhhhcchhhccCcchHhHHHHHHhhhhhccCCCCccccc
Q psy6275 346 SNAMDVLSEEDRKLPQIENILPLLRRGIGIHHGVKPYGLWQ 386 (391)
Q Consensus 346 ~~~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~~~~~~~r~ 386 (391)
+. +.. ......+.+++..||++||+||+..+|+
T Consensus 279 -~~---~~~----~~~~~~L~~~l~~gv~~hHagl~~~eR~ 311 (720)
T PRK00254 279 -DS---LEE----NPTNEKLKKALRGGVAFHHAGLGRTERV 311 (720)
T ss_pred -HH---Hhc----CCCcHHHHHHHhhCEEEeCCCCCHHHHH
Confidence 11 100 0112457788999999999999988875
|
|
| >COG1204 Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-36 Score=303.38 Aligned_cols=300 Identities=28% Similarity=0.355 Sum_probs=214.1
Q ss_pred cccccCCCCccCCC-CCcHHHHHHHHH-HhcCCcEEEEecCCcchHHHHHHHHHHHHhc-CCeEEEEcccHHHHHHHHHH
Q psy6275 43 LAQSKEKPAREYPF-VLDPFQKEAILC-IENNQSVLVSAHTSAGKTVVAEYAIASSLKQ-SQRVIYTTPIKALSNQKYRE 119 (391)
Q Consensus 43 l~~~~~~~~~~~~~-~~~~~Q~~~i~~-i~~~~~~li~apTGsGKT~~~~~~~~~~l~~-~~~vlvl~P~~~L~~q~~~~ 119 (391)
+++.+.+.++..++ ++.+.|+.++.. +.+++|+++++|||||||+++++++++.+.. +.+++|++|+++|+.|.+++
T Consensus 16 ~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~ 95 (766)
T COG1204 16 LDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYEE 95 (766)
T ss_pred ccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHH
Confidence 45556666667777 477777777765 4567999999999999999999999998877 58999999999999999999
Q ss_pred HH--Hhcc-cceeeeCCcccCC----CCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhC
Q psy6275 120 FE--EQFK-DVGLITGDVTINP----SSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLS 192 (391)
Q Consensus 120 ~~--~~~~-~v~~~~g~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~ 192 (391)
|+ +.++ +|+..+|+..... .++|+|+|||++.....+....+..+++||+||+|.+.+..+|+.++.+.....
T Consensus 96 ~~~~~~~GirV~~~TgD~~~~~~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~ 175 (766)
T COG1204 96 FSRLEELGIRVGISTGDYDLDDERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMR 175 (766)
T ss_pred hhhHHhcCCEEEEecCCcccchhhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehhHHHHHH
Confidence 99 2233 8999999988543 689999999999999998888899999999999999998889999999888764
Q ss_pred ---CCCcEEEEcccCCChHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhh
Q psy6275 193 ---DNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLAN 269 (391)
Q Consensus 193 ---~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 269 (391)
...|++++|||+||..++++|++.......+-.....++.+..+.++...+....
T Consensus 176 ~~~~~~rivgLSATlpN~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~---------------------- 233 (766)
T COG1204 176 RLNELIRIVGLSATLPNAEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKT---------------------- 233 (766)
T ss_pred hhCcceEEEEEeeecCCHHHHHHHhCCcccccCCCCcccccCCccceEEEEecCcccc----------------------
Confidence 3479999999999999999999853222222233334444444444433221100
Q ss_pred hhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhcc--CCCChHHHHHHHHHHHH
Q psy6275 270 AGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKL--NFNETEEVKLVDDVFSN 347 (391)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~--g~~~~~~r~~~~~~~~~ 347 (391)
.+....+.+..++...... ++++||||+||+.+...|..|+.. +.....+..........
T Consensus 234 -----------------~~~~~~~~~~~~v~~~~~~-~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~ 295 (766)
T COG1204 234 -----------------WPLLIDNLALELVLESLAE-GGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASP 295 (766)
T ss_pred -----------------ccccchHHHHHHHHHHHhc-CCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccc
Confidence 0000012233333333333 459999999999999999999852 22222221111111111
Q ss_pred HhhhcchhhccCcchHhHHHHHHhhhhhccCCCCccccc
Q psy6275 348 AMDVLSEEDRKLPQIENILPLLRRGIGIHHGVKPYGLWQ 386 (391)
Q Consensus 348 ~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~~~~~~~r~ 386 (391)
. .. .+......+.+.+++.+||+||||||++.+|+
T Consensus 296 ~---~~-~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~ 330 (766)
T COG1204 296 I---LI-PETPTSEDEELAELVLRGVAFHHAGLPREDRQ 330 (766)
T ss_pred c---cc-ccccccchHHHHHHHHhCccccccCCCHHHHH
Confidence 1 11 11112233788999999999999999999886
|
|
| >KOG0340|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=268.39 Aligned_cols=287 Identities=17% Similarity=0.191 Sum_probs=223.7
Q ss_pred CCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc---CCeEEEEcccHH
Q psy6275 36 PDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ---SQRVIYTTPIKA 111 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~---~~~vlvl~P~~~ 111 (391)
.+|+.+++.+.+.+.++.+|.. |||+|..|||.|++|+|++-+|.||||||.+|.+|+++.++. +--++|+.|||+
T Consensus 7 ~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrE 86 (442)
T KOG0340|consen 7 KPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRE 86 (442)
T ss_pred CchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHH
Confidence 4789999999999999999997 999999999999999999999999999999999999999976 457999999999
Q ss_pred HHHHHHHHHHHhcc----cceeeeCCcc-------cCCCCCEEEEcHHHHHHHHhcC----ccccCccceEEEecccccC
Q psy6275 112 LSNQKYREFEEQFK----DVGLITGDVT-------INPSSSCLIMTTEILRNMLYRG----SEITREVGWVIFDEIHYMR 176 (391)
Q Consensus 112 L~~q~~~~~~~~~~----~v~~~~g~~~-------~~~~~~I~v~Tp~~l~~~l~~~----~~~l~~~~~lViDE~h~~~ 176 (391)
|+.|+.++|.-.++ ++.++.|+.. ....++++|+|||++..++..+ ...++++.++|+||||.++
T Consensus 87 LA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL 166 (442)
T KOG0340|consen 87 LALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVL 166 (442)
T ss_pred HHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhh
Confidence 99999999999887 6777888776 3557899999999999888765 2356789999999999999
Q ss_pred ccccchhHHHHHHHhCCCCcEEEEcccCCChHHHHHHhccccCCC-eeEeee-CCCC--cCceEeeccCCCCCeeeeecC
Q psy6275 177 DKERGYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQP-CHVVYT-DYRP--TPLQHYLFPNGGDGIHLIVDD 252 (391)
Q Consensus 177 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~-~~v~~~-~~~~--~~i~~~~~~~~~~~~~~~v~~ 252 (391)
+..+...++.+.+.+|..+|.++||||+.+. +....+.....+ .+.... ++-+ ..+.+.++.++.+...
T Consensus 167 ~~~f~d~L~~i~e~lP~~RQtLlfSATitd~--i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkd----- 239 (442)
T KOG0340|consen 167 AGCFPDILEGIEECLPKPRQTLLFSATITDT--IKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKD----- 239 (442)
T ss_pred ccchhhHHhhhhccCCCccceEEEEeehhhH--HHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhH-----
Confidence 9999999999999999999999999999776 222222222221 222211 2222 2455555554432110
Q ss_pred chhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCC
Q psy6275 253 NKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNF 332 (391)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~ 332 (391)
..+..+++...+...+.++||+|+...|+.|+.-|..+++
T Consensus 240 ----------------------------------------aYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~ 279 (442)
T KOG0340|consen 240 ----------------------------------------AYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEV 279 (442)
T ss_pred ----------------------------------------HHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhce
Confidence 1123444444444567999999999999999999988755
Q ss_pred CC--------hHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhccCCC
Q psy6275 333 NE--------TEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHGVK 380 (391)
Q Consensus 333 ~~--------~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~~~ 380 (391)
.. +.+|-.-...|+. ....|++|| +.+||.||+|+.|
T Consensus 280 r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTD-----------VAsRGLDIP~V~L 325 (442)
T KOG0340|consen 280 RVVSLHSQMPQKERLAALSRFRSNAARILIATD-----------VASRGLDIPTVEL 325 (442)
T ss_pred eeeehhhcchHHHHHHHHHHHhhcCccEEEEec-----------hhhcCCCCCceeE
Confidence 43 3556555666666 677777775 9999999998765
|
|
| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=298.47 Aligned_cols=282 Identities=26% Similarity=0.405 Sum_probs=218.7
Q ss_pred CcccccccccCCCCccCCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHH
Q psy6275 38 LEYQPLAQSKEKPAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKY 117 (391)
Q Consensus 38 ~~~~~l~~~~~~~~~~~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~ 117 (391)
|+.+++++.+.+.+.+.+|+++++|.++++.+.+++|++++||||||||+++.+++++.+..+.+++|++|+++|+.|++
T Consensus 3 ~~~~~l~~~~~~~~~~~~~~l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~~~k~v~i~P~raLa~q~~ 82 (674)
T PRK01172 3 ISDLGYDDEFLNLFTGNDFELYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAGLKSIYIVPLRSLAMEKY 82 (674)
T ss_pred HhhcCCCHHHHHHHhhCCCCCCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHhCCcEEEEechHHHHHHHH
Confidence 56678889999899999999999999999999999999999999999999999999998888899999999999999999
Q ss_pred HHHHHhcc---cceeeeCCcccC----CCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHH
Q psy6275 118 REFEEQFK---DVGLITGDVTIN----PSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLIL 190 (391)
Q Consensus 118 ~~~~~~~~---~v~~~~g~~~~~----~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~ 190 (391)
+.++++.. .+...+|+.... ...+|+|+||+++..++.+....+++++++|+||+|++.+.+++..++.++..
T Consensus 83 ~~~~~l~~~g~~v~~~~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~ 162 (674)
T PRK01172 83 EELSRLRSLGMRVKISIGDYDDPPDFIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPTLETVLSS 162 (674)
T ss_pred HHHHHHhhcCCeEEEEeCCCCCChhhhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccHHHHHHHHH
Confidence 99987533 666777765533 35799999999999988877777889999999999999988899998887765
Q ss_pred h---CCCCcEEEEcccCCChHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHh
Q psy6275 191 L---SDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVL 267 (391)
Q Consensus 191 ~---~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 267 (391)
+ +.+.|++++|||+++..++++|++. ..+....++.+++..++.... .. .+... .
T Consensus 163 ~~~~~~~~riI~lSATl~n~~~la~wl~~------~~~~~~~r~vpl~~~i~~~~~--~~--~~~~~--~---------- 220 (674)
T PRK01172 163 ARYVNPDARILALSATVSNANELAQWLNA------SLIKSNFRPVPLKLGILYRKR--LI--LDGYE--R---------- 220 (674)
T ss_pred HHhcCcCCcEEEEeCccCCHHHHHHHhCC------CccCCCCCCCCeEEEEEecCe--ee--ecccc--c----------
Confidence 4 4678999999999999999999863 224556677777655432110 00 00000 0
Q ss_pred hhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhcc-----------------
Q psy6275 268 ANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKL----------------- 330 (391)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~----------------- 330 (391)
. ...+..++..... .++++||||+|+++|+.++..|...
T Consensus 221 ---------------------~--~~~~~~~i~~~~~-~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~ 276 (674)
T PRK01172 221 ---------------------S--QVDINSLIKETVN-DGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVY 276 (674)
T ss_pred ---------------------c--cccHHHHHHHHHh-CCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccc
Confidence 0 0012223332222 3469999999999999999988653
Q ss_pred ----------------CCCChHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhc
Q psy6275 331 ----------------NFNETEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIH 376 (391)
Q Consensus 331 ----------------g~~~~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~ 376 (391)
+-...++|..+.+.|++ .+++|++| +++++|||++
T Consensus 277 ~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT-----------~~la~Gvnip 328 (674)
T PRK01172 277 DDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVAT-----------PTLAAGVNLP 328 (674)
T ss_pred cHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEec-----------chhhccCCCc
Confidence 11123678888888887 66777777 4999999985
|
|
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=296.34 Aligned_cols=288 Identities=17% Similarity=0.187 Sum_probs=204.7
Q ss_pred ccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc--CCeEEEEcccHHHHHHHHH
Q psy6275 42 PLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ--SQRVIYTTPIKALSNQKYR 118 (391)
Q Consensus 42 ~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~--~~~vlvl~P~~~L~~q~~~ 118 (391)
.+++.+.+.+.+.||+ |+++|.++|+.+.+|+|+++++|||||||++|++|+++.+.. +.++||++||++|+.|+..
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q~~~ 99 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALAADQLR 99 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHHHHH
Confidence 3667788899999997 999999999999999999999999999999999999998743 5699999999999999999
Q ss_pred HHHHhcc---cceeeeCCccc------CCCCCEEEEcHHHHHHHHhc-C---ccccCccceEEEecccccCccccchhHH
Q psy6275 119 EFEEQFK---DVGLITGDVTI------NPSSSCLIMTTEILRNMLYR-G---SEITREVGWVIFDEIHYMRDKERGYVWE 185 (391)
Q Consensus 119 ~~~~~~~---~v~~~~g~~~~------~~~~~I~v~Tp~~l~~~l~~-~---~~~l~~~~~lViDE~h~~~~~~~~~~~~ 185 (391)
.++++.. .+..++|+... ..+++|+|+||+++...+.. . ...+++++++|+||||.+.+ .++..+.
T Consensus 100 ~l~~l~~~~i~v~~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g-~fg~~~~ 178 (742)
T TIGR03817 100 AVRELTLRGVRPATYDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG-VFGSHVA 178 (742)
T ss_pred HHHHhccCCeEEEEEeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC-ccHHHHH
Confidence 9998853 56667887653 34689999999998743321 1 23478999999999999876 3676665
Q ss_pred HHHHHh-------CCCCcEEEEcccCCChHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhh
Q psy6275 186 ETLILL-------SDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEH 258 (391)
Q Consensus 186 ~i~~~~-------~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~ 258 (391)
.++..+ +.++|++++|||++++..+++++. +.+..++..+..+....++.++.+.. .... .....
T Consensus 179 ~il~rL~ri~~~~g~~~q~i~~SATi~n~~~~~~~l~---g~~~~~i~~~~~~~~~~~~~~~~p~~-~~~~-~~~~~--- 250 (742)
T TIGR03817 179 LVLRRLRRLCARYGASPVFVLASATTADPAAAASRLI---GAPVVAVTEDGSPRGARTVALWEPPL-TELT-GENGA--- 250 (742)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEecCCCCHHHHHHHHc---CCCeEEECCCCCCcCceEEEEecCCc-cccc-ccccc---
Confidence 555443 457899999999999866776543 35555555555554434443332210 0000 00000
Q ss_pred chHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhcc--------
Q psy6275 259 NYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKL-------- 330 (391)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~-------- 330 (391)
..++... .....++..+... +.++||||+|++.|+.++..|++.
T Consensus 251 --------------------------~~r~~~~-~~~~~~l~~l~~~-~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l 302 (742)
T TIGR03817 251 --------------------------PVRRSAS-AEAADLLADLVAE-GARTLTFVRSRRGAELVAAIARRLLGEVDPDL 302 (742)
T ss_pred --------------------------ccccchH-HHHHHHHHHHHHC-CCCEEEEcCCHHHHHHHHHHHHHHHHhhcccc
Confidence 0000000 0111233333233 459999999999999999987652
Q ss_pred --------CCCChHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhcc
Q psy6275 331 --------NFNETEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHH 377 (391)
Q Consensus 331 --------g~~~~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h 377 (391)
|-...++|..+++.|++ .+++|++|| ++++||||..
T Consensus 303 ~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd-----------~lerGIDI~~ 347 (742)
T TIGR03817 303 AERVAAYRAGYLPEDRRELERALRDGELLGVATTN-----------ALELGVDISG 347 (742)
T ss_pred ccchhheecCCCHHHHHHHHHHHHcCCceEEEECc-----------hHhccCCccc
Confidence 11224678888888888 678888885 9999999964
|
A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA. |
| >KOG0952|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-35 Score=291.58 Aligned_cols=278 Identities=25% Similarity=0.375 Sum_probs=212.0
Q ss_pred CCCC-CcHHHHHHHHHH-hcCCcEEEEecCCcchHHHHHHHHHHHHh----------cCCeEEEEcccHHHHHHHHHHHH
Q psy6275 54 YPFV-LDPFQKEAILCI-ENNQSVLVSAHTSAGKTVVAEYAIASSLK----------QSQRVIYTTPIKALSNQKYREFE 121 (391)
Q Consensus 54 ~~~~-~~~~Q~~~i~~i-~~~~~~li~apTGsGKT~~~~~~~~~~l~----------~~~~vlvl~P~~~L~~q~~~~~~ 121 (391)
++|+ ++.+|..++|.+ .++.|.+|+||||+|||..+++.+++.++ .+.+++|++|+++|+.++++.|.
T Consensus 106 f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~ 185 (1230)
T KOG0952|consen 106 FSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFS 185 (1230)
T ss_pred ccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHh
Confidence 4566 999999999965 67899999999999999999999999997 46799999999999999999999
Q ss_pred Hhcc----cceeeeCCcccCC----CCCEEEEcHHHHHHHHhcC---ccccCccceEEEecccccCccccchhHHHHHHH
Q psy6275 122 EQFK----DVGLITGDVTINP----SSSCLIMTTEILRNMLYRG---SEITREVGWVIFDEIHYMRDKERGYVWEETLIL 190 (391)
Q Consensus 122 ~~~~----~v~~~~g~~~~~~----~~~I~v~Tp~~l~~~l~~~---~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~ 190 (391)
+.+. .|..++||..... +++|+|+|||++.-.-.+. ...++.+++||+||+|.+-+ .+|+.++.+..+
T Consensus 186 kkl~~~gi~v~ELTGD~ql~~tei~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd-~RGpvlEtiVaR 264 (1230)
T KOG0952|consen 186 KKLAPLGISVRELTGDTQLTKTEIADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHD-DRGPVLETIVAR 264 (1230)
T ss_pred hhcccccceEEEecCcchhhHHHHHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcC-cccchHHHHHHH
Confidence 9887 5667999988654 6899999999875322222 34567899999999998766 589999988765
Q ss_pred h-------CCCCcEEEEcccCCChHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHH
Q psy6275 191 L-------SDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVA 263 (391)
Q Consensus 191 ~-------~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 263 (391)
. ....+++++|||+||-.+++.||+......++.|....||+|+++.++..+..+-. ... ..
T Consensus 265 tlr~vessqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~-------~~~----~~ 333 (1230)
T KOG0952|consen 265 TLRLVESSQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNR-------QQK----KN 333 (1230)
T ss_pred HHHHHHhhhhheEEEEeeccCCCHHHHHHHhcCCCccceeeecccccccceeeeEEeeecccch-------hhh----hh
Confidence 4 35689999999999999999999987667788999999999999999865432100 000 00
Q ss_pred HHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCChHHHHHHHH
Q psy6275 264 MNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNETEEVKLVDD 343 (391)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~~~~r~~~~~ 343 (391)
+.. .....+.+.+.+ +.+++|||.+|..+.+.|+.|.+.+...
T Consensus 334 ~d~--------------------------~~~~kv~e~~~~--g~qVlvFvhsR~~Ti~tA~~l~~~a~~~--------- 376 (1230)
T KOG0952|consen 334 IDE--------------------------VCYDKVVEFLQE--GHQVLVFVHSRNETIRTAKKLRERAETN--------- 376 (1230)
T ss_pred HHH--------------------------HHHHHHHHHHHc--CCeEEEEEecChHHHHHHHHHHHHHHhc---------
Confidence 000 111234444433 4599999999999999999998643211
Q ss_pred HHHHHhhhcchhhccCcchHhHHHHHHhhhhhccCCCCcccccc
Q psy6275 344 VFSNAMDVLSEEDRKLPQIENILPLLRRGIGIHHGVKPYGLWQS 387 (391)
Q Consensus 344 ~~~~~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~~~~~~~r~~ 387 (391)
+..+.+...+ ....+.+++.+|+++|||||++.+|+.
T Consensus 377 ---g~~~~f~~~~----~~k~l~elf~~g~~iHhAGm~r~DR~l 413 (1230)
T KOG0952|consen 377 ---GEKDLFLPSP----RNKQLKELFQQGMGIHHAGMLRSDRQL 413 (1230)
T ss_pred ---CcccccCCCh----hhHHHHHHHHhhhhhcccccchhhHHH
Confidence 1112222111 123466799999999999999999963
|
|
| >KOG4284|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=281.98 Aligned_cols=295 Identities=18% Similarity=0.191 Sum_probs=247.7
Q ss_pred CCCCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh---cCCeEEEEccc
Q psy6275 34 LPPDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK---QSQRVIYTTPI 109 (391)
Q Consensus 34 ~~~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~---~~~~vlvl~P~ 109 (391)
.+.+|+.+.+..+++..++..+|. ||++|..|||.+..+.++|+.|..|+|||++|...+++.+. ...+.+|++||
T Consensus 23 ~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PT 102 (980)
T KOG4284|consen 23 CTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPT 102 (980)
T ss_pred CCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecc
Confidence 456888899999999999999997 99999999999999999999999999999999888877764 35799999999
Q ss_pred HHHHHHHHHHHHHhcc-----cceeeeCCcccCC------CCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCc-
Q psy6275 110 KALSNQKYREFEEQFK-----DVGLITGDVTINP------SSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRD- 177 (391)
Q Consensus 110 ~~L~~q~~~~~~~~~~-----~v~~~~g~~~~~~------~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~- 177 (391)
|+++-|+.+.+...+. ++.++.|++.... +++|+|+|||++..++..+...+.+++++|+||||.+.+
T Consensus 103 REiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t 182 (980)
T KOG4284|consen 103 REIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDT 182 (980)
T ss_pred hhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhhceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhch
Confidence 9999999999999887 6778888887542 578999999999999998888899999999999999887
Q ss_pred cccchhHHHHHHHhCCCCcEEEEcccCCChHHHHHHhccccCCCeeEeeeCCCC--cCceEeeccCCCCCeeeeecCchh
Q psy6275 178 KERGYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRP--TPLQHYLFPNGGDGIHLIVDDNKF 255 (391)
Q Consensus 178 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~~--~~i~~~~~~~~~~~~~~~v~~~~~ 255 (391)
..+...+..|+..+|..+|++++|||.|.. +.+.|..++..|..+.-+...+ ..+++|++..+...
T Consensus 183 ~sfq~~In~ii~slP~~rQv~a~SATYp~n--Ldn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~n---------- 250 (980)
T KOG4284|consen 183 ESFQDDINIIINSLPQIRQVAAFSATYPRN--LDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPN---------- 250 (980)
T ss_pred hhHHHHHHHHHHhcchhheeeEEeccCchh--HHHHHHHHhcccceeecccCCceeechhheeeeccCCc----------
Confidence 568888999999999999999999999876 5666667777888876555443 37889988765321
Q ss_pred hhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCCh
Q psy6275 256 KEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNET 335 (391)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~~ 335 (391)
.....|. .+++.|-+.++..+..+.||||+....|+.+|..|.+.|+.+.
T Consensus 251 ---nsveemr---------------------------lklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~ 300 (980)
T KOG4284|consen 251 ---NSVEEMR---------------------------LKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVT 300 (980)
T ss_pred ---chHHHHH---------------------------HHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeE
Confidence 1111111 2345677777788888999999999999999999999999875
Q ss_pred --------HHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhccCCCC
Q psy6275 336 --------EEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHGVKP 381 (391)
Q Consensus 336 --------~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~~~~ 381 (391)
.+|...++.++. .+++|++|| +.+||||-.|++|-
T Consensus 301 ~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTD-----------LtaRGIDa~~vNLV 344 (980)
T KOG4284|consen 301 FISGAMSQKDRLLAVDQLRAFRVRILVSTD-----------LTARGIDADNVNLV 344 (980)
T ss_pred EeccccchhHHHHHHHHhhhceEEEEEecc-----------hhhccCCccccceE
Confidence 677777788877 668888885 99999999999873
|
|
| >KOG0332|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=258.33 Aligned_cols=286 Identities=16% Similarity=0.147 Sum_probs=229.2
Q ss_pred CCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhc--CCcEEEEecCCcchHHHHHHHHHHHHhc---CCeEEEEccc
Q psy6275 36 PDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIEN--NQSVLVSAHTSAGKTVVAEYAIASSLKQ---SQRVIYTTPI 109 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~--~~~~li~apTGsGKT~~~~~~~~~~l~~---~~~vlvl~P~ 109 (391)
.+|+++.|.|++++.+..++|+ |+.+|..|+|.++. .+|++..+..|+|||.+|.+.++..+.. .+++++|+|+
T Consensus 90 ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLaPt 169 (477)
T KOG0332|consen 90 KSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAPT 169 (477)
T ss_pred ccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeCch
Confidence 4899999999999999999998 99999999998864 5899999999999999999999998854 5799999999
Q ss_pred HHHHHHHHHHHHHhcccc----ee-eeCCcccCC---CCCEEEEcHHHHHHHHhc-CccccCccceEEEecccccCcc-c
Q psy6275 110 KALSNQKYREFEEQFKDV----GL-ITGDVTINP---SSSCLIMTTEILRNMLYR-GSEITREVGWVIFDEIHYMRDK-E 179 (391)
Q Consensus 110 ~~L~~q~~~~~~~~~~~v----~~-~~g~~~~~~---~~~I~v~Tp~~l~~~l~~-~~~~l~~~~~lViDE~h~~~~~-~ 179 (391)
|+|+.|+...+.+.++.. .+ +.|+...+. ..+|+|+||+.+.+++.. ....+..++.+|+||||.|.+. +
T Consensus 170 rELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG 249 (477)
T KOG0332|consen 170 RELAPQTGEVVEEMGKFTELTASYAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQG 249 (477)
T ss_pred HHHHHHHHHHHHHhcCceeeeEEEEecCcccccCCcchhheeeCCCccHHHHHHHHHhhChhhceEEEecchhhhhhccc
Confidence 999999999999998833 22 223322222 357999999999999887 6677889999999999998764 5
Q ss_pred cchhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhh
Q psy6275 180 RGYVWEETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEH 258 (391)
Q Consensus 180 ~~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~ 258 (391)
++..--.+...++.+.|++++|||+... +.|+..+- ...+++.+-.......++.++++.+...
T Consensus 250 ~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kiv-pn~n~i~Lk~eel~L~~IkQlyv~C~~~-------------- 314 (477)
T KOG0332|consen 250 FQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIV-PNANVIILKREELALDNIKQLYVLCACR-------------- 314 (477)
T ss_pred ccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhc-CCCceeeeehhhccccchhhheeeccch--------------
Confidence 6666677888899999999999999776 66666432 1223344444555667899998887643
Q ss_pred chHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCCh---
Q psy6275 259 NYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNET--- 335 (391)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~~--- 335 (391)
+++...|..++.....+++||||.|++.|..++..|++.|....
T Consensus 315 ---------------------------------~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~ 361 (477)
T KOG0332|consen 315 ---------------------------------DDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLH 361 (477)
T ss_pred ---------------------------------hhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEee
Confidence 24455666666555667999999999999999999999887654
Q ss_pred -----HHHHHHHHHHHHH-hhhcchhhccCcchHhHHHHHHhhhhhccCCC
Q psy6275 336 -----EEVKLVDDVFSNA-MDVLSEEDRKLPQIENILPLLRRGIGIHHGVK 380 (391)
Q Consensus 336 -----~~r~~~~~~~~~~-~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~~~ 380 (391)
++|..+.+.|+.+ ..+|+.| ++++||||+..+++
T Consensus 362 G~l~~~~R~~ii~~Fr~g~~kVLitT-----------nV~ARGiDv~qVs~ 401 (477)
T KOG0332|consen 362 GDLTVEQRAAIIDRFREGKEKVLITT-----------NVCARGIDVAQVSV 401 (477)
T ss_pred ccchhHHHHHHHHHHhcCcceEEEEe-----------chhhcccccceEEE
Confidence 7889998888884 4666655 69999999987654
|
|
| >KOG0348|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=266.60 Aligned_cols=187 Identities=20% Similarity=0.240 Sum_probs=155.8
Q ss_pred CCCcccccccccCCCCcc-CCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh---------cCCeEE
Q psy6275 36 PDLEYQPLAQSKEKPARE-YPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK---------QSQRVI 104 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~-~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~---------~~~~vl 104 (391)
..|..++|++.+...++. +++. ||.+|+++||.+++|++++|.++||||||++|++|+.+.+. .|.-+|
T Consensus 136 ~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~AL 215 (708)
T KOG0348|consen 136 AAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYAL 215 (708)
T ss_pred ccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEE
Confidence 368889999998877665 6786 99999999999999999999999999999999999999884 367899
Q ss_pred EEcccHHHHHHHHHHHHHhccc-----ceeeeCCccc-------CCCCCEEEEcHHHHHHHHhcCc-cccCccceEEEec
Q psy6275 105 YTTPIKALSNQKYREFEEQFKD-----VGLITGDVTI-------NPSSSCLIMTTEILRNMLYRGS-EITREVGWVIFDE 171 (391)
Q Consensus 105 vl~P~~~L~~q~~~~~~~~~~~-----v~~~~g~~~~-------~~~~~I~v~Tp~~l~~~l~~~~-~~l~~~~~lViDE 171 (391)
|++|||||+.|+|+.++++.+. .+++.|+... +...+|+|+|||+|++++.+.. ..++.++++|+||
T Consensus 216 VivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDE 295 (708)
T KOG0348|consen 216 VIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDE 295 (708)
T ss_pred EEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecc
Confidence 9999999999999999999882 2445555442 3467899999999999998754 4678899999999
Q ss_pred ccccCccccchhHHHHHHHhC-------------CCCcEEEEcccCCCh-HHHHHHhccccCCCeeEe
Q psy6275 172 IHYMRDKERGYVWEETLILLS-------------DNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVV 225 (391)
Q Consensus 172 ~h~~~~~~~~~~~~~i~~~~~-------------~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~ 225 (391)
+|++++.+|+..+..|+..+. ...|-+++|||+.+. ..+++ ....+|.++-
T Consensus 296 aDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~---~sLkDpv~I~ 360 (708)
T KOG0348|consen 296 ADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLAD---LSLKDPVYIS 360 (708)
T ss_pred hhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhh---ccccCceeee
Confidence 999999999999999888762 247889999999776 55665 3345666654
|
|
| >KOG0336|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=260.99 Aligned_cols=274 Identities=16% Similarity=0.188 Sum_probs=214.9
Q ss_pred cccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh---------cCCeEEEEcccH
Q psy6275 41 QPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK---------QSQRVIYTTPIK 110 (391)
Q Consensus 41 ~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~---------~~~~vlvl~P~~ 110 (391)
+.-.+++++++++.||+ |+|+|.+|+|.++.|.+++.+|.||+|||++|++|-+-++. .++.+|++.||+
T Consensus 225 Fq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptr 304 (629)
T KOG0336|consen 225 FQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTR 304 (629)
T ss_pred HhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccH
Confidence 45566788999999997 99999999999999999999999999999999998765552 257899999999
Q ss_pred HHHHHHHHHHHHhcc----cceeeeCCcc------cCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCcccc
Q psy6275 111 ALSNQKYREFEEQFK----DVGLITGDVT------INPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKER 180 (391)
Q Consensus 111 ~L~~q~~~~~~~~~~----~v~~~~g~~~------~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~ 180 (391)
+|+.|+.-+..++.- .+.+..|+.. ......|+++||++|..+...+...+..+.++|+||||.|+|++|
T Consensus 305 eLalqie~e~~kysyng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgF 384 (629)
T KOG0336|consen 305 ELALQIEGEVKKYSYNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGF 384 (629)
T ss_pred HHHHHHHhHHhHhhhcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccc
Confidence 999999877766643 3333433322 345689999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHHhccccCCCeeEeeeCCCCc---CceEeeccCCCCCeeeeecCchhh
Q psy6275 181 GYVWEETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVYTDYRPT---PLQHYLFPNGGDGIHLIVDDNKFK 256 (391)
Q Consensus 181 ~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~~~~~~~~---~i~~~~~~~~~~~~~~~v~~~~~~ 256 (391)
.+.+..++-.+++++|+++.|||.|.. ..++. .++++|..++......+ .+++.++.....
T Consensus 385 EpqIrkilldiRPDRqtvmTSATWP~~VrrLa~---sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~------------ 449 (629)
T KOG0336|consen 385 EPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQ---SYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDS------------ 449 (629)
T ss_pred cHHHHHHhhhcCCcceeeeecccCchHHHHHHH---HhhhCceEEEecccceeeeeeeeeeEEecccH------------
Confidence 999999999999999999999999887 66666 56678888887766544 466666432211
Q ss_pred hhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHH--cCCCcEEEEEcchhhHHHHHHHhhccCCCC
Q psy6275 257 EHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIME--RNLAPVIVFSFSKKDCEIYAMQMAKLNFNE 334 (391)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~iIF~~t~~~~~~la~~L~~~g~~~ 334 (391)
+++ .++..+.+ ....++||||..+..|+.|...|.-.|+.+
T Consensus 450 ------------------------------------~k~-~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~ 492 (629)
T KOG0336|consen 450 ------------------------------------EKL-EIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISS 492 (629)
T ss_pred ------------------------------------HHH-HHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccch
Confidence 111 22222222 235699999999999999999998877776
Q ss_pred h--------HHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhcc
Q psy6275 335 T--------EEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHH 377 (391)
Q Consensus 335 ~--------~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h 377 (391)
+ ..|+...+.|+. .+.+|++| |+.+||+|+|.
T Consensus 493 q~lHG~r~Q~DrE~al~~~ksG~vrILvaT-----------DlaSRGlDv~D 533 (629)
T KOG0336|consen 493 QSLHGNREQSDREMALEDFKSGEVRILVAT-----------DLASRGLDVPD 533 (629)
T ss_pred hhccCChhhhhHHHHHHhhhcCceEEEEEe-----------chhhcCCCchh
Confidence 5 334444555555 56666666 59999999974
|
|
| >COG1202 Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-33 Score=262.48 Aligned_cols=279 Identities=24% Similarity=0.401 Sum_probs=222.4
Q ss_pred CCcccccccccCCCCccCCCC-CcHHHHHHHHH-HhcCCcEEEEecCCcchHHHHHHHHHH-HHhcCCeEEEEcccHHHH
Q psy6275 37 DLEYQPLAQSKEKPAREYPFV-LDPFQKEAILC-IENNQSVLVSAHTSAGKTVVAEYAIAS-SLKQSQRVIYTTPIKALS 113 (391)
Q Consensus 37 ~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~-i~~~~~~li~apTGsGKT~~~~~~~~~-~l~~~~~vlvl~P~~~L~ 113 (391)
..+.+++++.+..-++..|++ +.|+|..++.. +++|+|.+++++|+||||++..++-+. .+..+.+.|+++|..+|+
T Consensus 195 ~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~KmlfLvPLVALA 274 (830)
T COG1202 195 PVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVALA 274 (830)
T ss_pred cccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCCCeEEEEehhHHhh
Confidence 457889999999999999997 99999999986 789999999999999999999766444 556699999999999999
Q ss_pred HHHHHHHHHhccc----ceeeeCCcc-----------cCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCcc
Q psy6275 114 NQKYREFEEQFKD----VGLITGDVT-----------INPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDK 178 (391)
Q Consensus 114 ~q~~~~~~~~~~~----v~~~~g~~~-----------~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~ 178 (391)
+|-+..|++..++ +.+..|-.. ...+++|+|+|++-+..++..+ ..+.+++.+||||+|.+.+.
T Consensus 275 NQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtVVIDEiHtL~de 353 (830)
T COG1202 275 NQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTVVIDEIHTLEDE 353 (830)
T ss_pred cchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceEEeeeeeeccch
Confidence 9999999988773 323333222 2346899999999998877766 66899999999999999998
Q ss_pred ccchhHHHHHHHhC---CCCcEEEEcccCCChHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchh
Q psy6275 179 ERGYVWEETLILLS---DNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKF 255 (391)
Q Consensus 179 ~~~~~~~~i~~~~~---~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~ 255 (391)
.+|+.++.++..++ ++.|+|.+|||..|+..+++.++. ..+..+.||+|++.+++.+.+..
T Consensus 354 ERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp~elA~~l~a------~lV~y~~RPVplErHlvf~~~e~---------- 417 (830)
T COG1202 354 ERGPRLDGLIGRLRYLFPGAQFIYLSATVGNPEELAKKLGA------KLVLYDERPVPLERHLVFARNES---------- 417 (830)
T ss_pred hcccchhhHHHHHHHhCCCCeEEEEEeecCChHHHHHHhCC------eeEeecCCCCChhHeeeeecCch----------
Confidence 99999998887654 579999999999999999998873 45667899999998887654320
Q ss_pred hhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHH-H---HHcC-CCcEEEEEcchhhHHHHHHHhhcc
Q psy6275 256 KEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKM-I---MERN-LAPVIVFSFSKKDCEIYAMQMAKL 330 (391)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-l---~~~~-~~~~iIF~~t~~~~~~la~~L~~~ 330 (391)
... +.+..|++. . ...+ .++||||.+||+.|..+|..|...
T Consensus 418 ---eK~-------------------------------~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~k 463 (830)
T COG1202 418 ---EKW-------------------------------DIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGK 463 (830)
T ss_pred ---HHH-------------------------------HHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcC
Confidence 000 111122211 1 1111 469999999999999999999988
Q ss_pred CCCCh--------HHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhcc
Q psy6275 331 NFNET--------EEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHH 377 (391)
Q Consensus 331 g~~~~--------~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h 377 (391)
|+.+. .+|..+...|.+ .+.+++.| .+|+.||||+-
T Consensus 464 G~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTT-----------AAL~AGVDFPA 508 (830)
T COG1202 464 GLKAAPYHAGLPYKERKSVERAFAAQELAAVVTT-----------AALAAGVDFPA 508 (830)
T ss_pred CcccccccCCCcHHHHHHHHHHHhcCCcceEeeh-----------hhhhcCCCCch
Confidence 88875 678888888888 66777766 58889999873
|
|
| >KOG0327|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=254.30 Aligned_cols=280 Identities=18% Similarity=0.250 Sum_probs=229.0
Q ss_pred CCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc---CCeEEEEcccHH
Q psy6275 36 PDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ---SQRVIYTTPIKA 111 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~---~~~vlvl~P~~~ 111 (391)
.+|+.++|++.++..+..+||+ |+.+|+.||..+..|.|+.+.+.+|+|||.+|..++++.+.. ..++++++|+++
T Consensus 26 dsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtre 105 (397)
T KOG0327|consen 26 DSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRE 105 (397)
T ss_pred hhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHH
Confidence 4899999999999999999998 999999999999999999999999999999999999998743 468999999999
Q ss_pred HHHHHHHHHHHhcc----cceeeeCCcccC--------CCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccc
Q psy6275 112 LSNQKYREFEEQFK----DVGLITGDVTIN--------PSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKE 179 (391)
Q Consensus 112 L~~q~~~~~~~~~~----~v~~~~g~~~~~--------~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~ 179 (391)
|+.|.......++. .+..+.|+.... ..++|+++||+++..++.......+.++++|+||+|+|+..+
T Consensus 106 La~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs~g 185 (397)
T KOG0327|consen 106 LAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLSRG 185 (397)
T ss_pred HHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHhhhccc
Confidence 99999988877776 344455655433 136899999999999998887777889999999999999999
Q ss_pred cchhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHHhccccCCCeeEeeeCCCC--cCceEeeccCCCCCeeeeecCchhh
Q psy6275 180 RGYVWEETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVYTDYRP--TPLQHYLFPNGGDGIHLIVDDNKFK 256 (391)
Q Consensus 180 ~~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~~~~~~~--~~i~~~~~~~~~~~~~~~v~~~~~~ 256 (391)
+...+..+...++.+.|++++|||.|.. ..+.+ .++.+|..+....... ..++++++.+..+
T Consensus 186 fkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~---~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~------------ 250 (397)
T KOG0327|consen 186 FKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTK---KFMREPVRILVKKDELTLEGIKQFYINVEKE------------ 250 (397)
T ss_pred hHHHHHHHHHHcCcchhheeecccCcHHHHHHHH---HhccCceEEEecchhhhhhheeeeeeecccc------------
Confidence 9999999999999999999999999877 55555 4556777776655443 3567777655432
Q ss_pred hhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCC--
Q psy6275 257 EHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNE-- 334 (391)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~-- 334 (391)
+++.-+...+. ...+.+|||||++.+..+...|.+.+.+.
T Consensus 251 ------------------------------------~k~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~ 292 (397)
T KOG0327|consen 251 ------------------------------------EKLDTLCDLYR--RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSA 292 (397)
T ss_pred ------------------------------------ccccHHHHHHH--hhhcceEEecchhhHHHHHHHHhhCCceEEE
Confidence 12334444444 45689999999999999999998876654
Q ss_pred ------hHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhccCC
Q psy6275 335 ------TEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHGV 379 (391)
Q Consensus 335 ------~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~~ 379 (391)
+.+|+.++..|+. ..++|+.+ ++++||||+-...
T Consensus 293 ~~~d~~q~~R~~~~~ef~~gssrvlItt-----------dl~argidv~~~s 333 (397)
T KOG0327|consen 293 IHGDMEQNERDTLMREFRSGSSRVLITT-----------DLLARGIDVQQVS 333 (397)
T ss_pred eecccchhhhhHHHHHhhcCCceEEeec-----------cccccccchhhcc
Confidence 3678888888777 55777777 4999999997643
|
|
| >KOG0339|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-33 Score=257.15 Aligned_cols=280 Identities=18% Similarity=0.207 Sum_probs=227.6
Q ss_pred CCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh--------cCCeEEEEc
Q psy6275 37 DLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK--------QSQRVIYTT 107 (391)
Q Consensus 37 ~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~--------~~~~vlvl~ 107 (391)
+|..++++..+...+++..|+ |||+|.+++|..+.+++++-.|-||||||.+|+.|++.++. .++..||++
T Consensus 224 sfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilv 303 (731)
T KOG0339|consen 224 SFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILV 303 (731)
T ss_pred hhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEe
Confidence 566777788888888888887 99999999999999999999999999999999999988773 368899999
Q ss_pred ccHHHHHHHHHHHHHhcc----cceeeeCCcccC-------CCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccC
Q psy6275 108 PIKALSNQKYREFEEQFK----DVGLITGDVTIN-------PSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMR 176 (391)
Q Consensus 108 P~~~L~~q~~~~~~~~~~----~v~~~~g~~~~~-------~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~ 176 (391)
|||+|+.|++.+.+++++ ++..++|+.+.+ ..+.|+||||++|.+++.-+...+.++.+||+||+++|.
T Consensus 304 PTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmf 383 (731)
T KOG0339|consen 304 PTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMF 383 (731)
T ss_pred ccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhh
Confidence 999999999999999977 445567766543 457899999999999999888889999999999999999
Q ss_pred ccccchhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHHhccccCCCeeEeeeCCCC--cCceEeeccCCCCCeeeeecCc
Q psy6275 177 DKERGYVWEETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVYTDYRP--TPLQHYLFPNGGDGIHLIVDDN 253 (391)
Q Consensus 177 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~~~~~~~--~~i~~~~~~~~~~~~~~~v~~~ 253 (391)
+++|.+.+..|..++++++|.++||||++.. +.+++ .+..+|+.+...+... ..|.|.+..++.+
T Consensus 384 dmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lar---d~L~dpVrvVqg~vgean~dITQ~V~V~~s~--------- 451 (731)
T KOG0339|consen 384 DMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLAR---DILSDPVRVVQGEVGEANEDITQTVSVCPSE--------- 451 (731)
T ss_pred ccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHH---HHhcCCeeEEEeehhccccchhheeeeccCc---------
Confidence 9999999999999999999999999999766 44444 4456788877664432 3466666655533
Q ss_pred hhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHH-cCCCcEEEEEcchhhHHHHHHHhhccCC
Q psy6275 254 KFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIME-RNLAPVIVFSFSKKDCEIYAMQMAKLNF 332 (391)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~iIF~~t~~~~~~la~~L~~~g~ 332 (391)
..+++-+++-|.+ ...+++||||..+..++.++..|.-.|+
T Consensus 452 --------------------------------------~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~ 493 (731)
T KOG0339|consen 452 --------------------------------------EKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGF 493 (731)
T ss_pred --------------------------------------HHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccc
Confidence 1334445554444 2356999999999999999999988877
Q ss_pred CCh--------HHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhcc
Q psy6275 333 NET--------EEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHH 377 (391)
Q Consensus 333 ~~~--------~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h 377 (391)
++. .+|..+...|+. ...+|+.|| +.+||.||.+
T Consensus 494 ~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatD-----------vaargldI~~ 536 (731)
T KOG0339|consen 494 NVSLLHGDKDQAERNEVLSKFKKKRKPVLVATD-----------VAARGLDIPS 536 (731)
T ss_pred eeeeecCchhhHHHHHHHHHHhhcCCceEEEee-----------HhhcCCCccc
Confidence 763 677777777777 467777775 8888888864
|
|
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-31 Score=265.54 Aligned_cols=265 Identities=15% Similarity=0.142 Sum_probs=187.4
Q ss_pred ccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceee
Q psy6275 52 REYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLI 130 (391)
Q Consensus 52 ~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~ 130 (391)
+.+||+ |+|+|.++|+.+++++++++++|||+|||++|++|++. .++.++|++|+++|+.|+...+....-.+..+
T Consensus 5 ~~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~---~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l 81 (470)
T TIGR00614 5 TVFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALC---SDGITLVISPLISLMEDQVLQLKASGIPATFL 81 (470)
T ss_pred hhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHH---cCCcEEEEecHHHHHHHHHHHHHHcCCcEEEE
Confidence 346887 99999999999999999999999999999999999875 37789999999999999999998776566666
Q ss_pred eCCccc-----------CCCCCEEEEcHHHHHHHH--hcCccccCccceEEEecccccCcccc--chhHHHH---HHHhC
Q psy6275 131 TGDVTI-----------NPSSSCLIMTTEILRNML--YRGSEITREVGWVIFDEIHYMRDKER--GYVWEET---LILLS 192 (391)
Q Consensus 131 ~g~~~~-----------~~~~~I~v~Tp~~l~~~l--~~~~~~l~~~~~lViDE~h~~~~~~~--~~~~~~i---~~~~~ 192 (391)
.++... ....+|+++||+++.... .........++++|+||||++++++. ...+..+ ...+
T Consensus 82 ~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~- 160 (470)
T TIGR00614 82 NSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQKF- 160 (470)
T ss_pred eCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHHHHc-
Confidence 665442 235789999999875321 11111456899999999999988753 3333332 2233
Q ss_pred CCCcEEEEcccCCCh--HHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhhh
Q psy6275 193 DNVRFVFLSATIPNA--SQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANA 270 (391)
Q Consensus 193 ~~~~~i~~SAT~~~~--~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 270 (391)
++.+++++|||+++. .++.++++. ..+........+ .++...+....
T Consensus 161 ~~~~~l~lTAT~~~~~~~di~~~l~l--~~~~~~~~s~~r-~nl~~~v~~~~---------------------------- 209 (470)
T TIGR00614 161 PNVPIMALTATASPSVREDILRQLNL--KNPQIFCTSFDR-PNLYYEVRRKT---------------------------- 209 (470)
T ss_pred CCCceEEEecCCCHHHHHHHHHHcCC--CCCcEEeCCCCC-CCcEEEEEeCC----------------------------
Confidence 468899999999875 456666542 223222222122 22221111000
Q ss_pred hhhhccCCCCCCCCCCCCCCCcccHHHHHHHHH-HcCCCcEEEEEcchhhHHHHHHHhhccCCCC--------hHHHHHH
Q psy6275 271 GDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIM-ERNLAPVIVFSFSKKDCEIYAMQMAKLNFNE--------TEEVKLV 341 (391)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~--------~~~r~~~ 341 (391)
.+....+...+. ...++++||||+|+++|+.++..|.+.|+.+ .++|..+
T Consensus 210 ---------------------~~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i 268 (470)
T TIGR00614 210 ---------------------PKILEDLLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDV 268 (470)
T ss_pred ---------------------ccHHHHHHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHH
Confidence 012334555555 3445567999999999999999999887764 3678888
Q ss_pred HHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhc------cCCCCcc
Q psy6275 342 DDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIH------HGVKPYG 383 (391)
Q Consensus 342 ~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~------h~~~~~~ 383 (391)
.+.|++ .+.+|++|+ ++++|||++ |.++|..
T Consensus 269 ~~~F~~g~~~vLVaT~-----------~~~~GID~p~V~~VI~~~~P~s 306 (470)
T TIGR00614 269 HHKFQRDEIQVVVATV-----------AFGMGINKPDVRFVIHYSLPKS 306 (470)
T ss_pred HHHHHcCCCcEEEEec-----------hhhccCCcccceEEEEeCCCCC
Confidence 888877 667888774 999999997 4556643
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=281.44 Aligned_cols=282 Identities=26% Similarity=0.320 Sum_probs=192.6
Q ss_pred cccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh---------cCCeEEEEcccHHHHH
Q psy6275 45 QSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK---------QSQRVIYTTPIKALSN 114 (391)
Q Consensus 45 ~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~---------~~~~vlvl~P~~~L~~ 114 (391)
+.+...+.. +|. |+|+|.++++.+.+|+|++++||||||||++|.+|++..+. .+.++||++|+++|+.
T Consensus 20 ~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~ 98 (876)
T PRK13767 20 PYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNN 98 (876)
T ss_pred HHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHH
Confidence 333333333 565 99999999999999999999999999999999999988763 2457999999999999
Q ss_pred HHHHHHHHh-------c--------c-cceeeeCCcccC-------CCCCEEEEcHHHHHHHHhcCc--cccCccceEEE
Q psy6275 115 QKYREFEEQ-------F--------K-DVGLITGDVTIN-------PSSSCLIMTTEILRNMLYRGS--EITREVGWVIF 169 (391)
Q Consensus 115 q~~~~~~~~-------~--------~-~v~~~~g~~~~~-------~~~~I~v~Tp~~l~~~l~~~~--~~l~~~~~lVi 169 (391)
|+++.+... . . .+.+.+|+.... ..++|+|+||+++..++.... ..++++++||+
T Consensus 99 di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVI 178 (876)
T PRK13767 99 DIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIV 178 (876)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEE
Confidence 998866532 1 1 456688887632 357999999999987775432 25789999999
Q ss_pred ecccccCccccchhHHHHHHHh----CCCCcEEEEcccCCChHHHHHHhcccc----CCCeeEeeeCCCCcCceEeeccC
Q psy6275 170 DEIHYMRDKERGYVWEETLILL----SDNVRFVFLSATIPNASQFAQWVSHLH----HQPCHVVYTDYRPTPLQHYLFPN 241 (391)
Q Consensus 170 DE~h~~~~~~~~~~~~~i~~~~----~~~~~~i~~SAT~~~~~~~~~~l~~~~----~~~~~v~~~~~~~~~i~~~~~~~ 241 (391)
||+|.+.+..++..+...+..+ +...|++++|||+++.+.++.|+.... ..++.+...... .++...+..
T Consensus 179 DE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~-k~~~i~v~~- 256 (876)
T PRK13767 179 DEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFV-KPFDIKVIS- 256 (876)
T ss_pred echhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCC-ccceEEEec-
Confidence 9999998877887766555433 367899999999998888999987532 122222211111 111111111
Q ss_pred CCCCeeeeecCchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHH
Q psy6275 242 GGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCE 321 (391)
Q Consensus 242 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~ 321 (391)
+...... ....... ......+.+.+.+ .+++||||||++.|+
T Consensus 257 p~~~l~~------~~~~~~~------------------------------~~l~~~L~~~i~~--~~~~LVF~nTr~~ae 298 (876)
T PRK13767 257 PVDDLIH------TPAEEIS------------------------------EALYETLHELIKE--HRTTLIFTNTRSGAE 298 (876)
T ss_pred cCccccc------cccchhH------------------------------HHHHHHHHHHHhc--CCCEEEEeCCHHHHH
Confidence 1000000 0000000 0111223333322 458999999999999
Q ss_pred HHHHHhhcc--------------CCCChHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhccC
Q psy6275 322 IYAMQMAKL--------------NFNETEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHG 378 (391)
Q Consensus 322 ~la~~L~~~--------------g~~~~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~ 378 (391)
.++..|++. |--..++|..+++.|++ .++++++|+ .+++|||+...
T Consensus 299 ~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs-----------~Le~GIDip~V 359 (876)
T PRK13767 299 RVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSST-----------SLELGIDIGYI 359 (876)
T ss_pred HHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----------hHHhcCCCCCC
Confidence 999999762 11234788889888888 667888774 99999999753
|
|
| >KOG0337|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.1e-33 Score=251.73 Aligned_cols=282 Identities=18% Similarity=0.198 Sum_probs=219.1
Q ss_pred CCCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcC----CeEEEEccc
Q psy6275 35 PPDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQS----QRVIYTTPI 109 (391)
Q Consensus 35 ~~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~----~~vlvl~P~ 109 (391)
..+|..++|...+..++.+.||. |||+|.+.||.++++++++..|-||||||.+|++|++..+... .|++++.||
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~Ralilspt 99 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPT 99 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCc
Confidence 45899999999999999999997 9999999999999999999999999999999999999998764 499999999
Q ss_pred HHHHHHHHHHHHHhcc----cceeeeCCcc-------cCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCcc
Q psy6275 110 KALSNQKYREFEEQFK----DVGLITGDVT-------INPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDK 178 (391)
Q Consensus 110 ~~L~~q~~~~~~~~~~----~v~~~~g~~~-------~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~ 178 (391)
++|+.|+.+.++++.. +..++.|+.. +..+++|+++||++++.+.-+-...++.+.+||+||+|.+.++
T Consensus 100 reLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfem 179 (529)
T KOG0337|consen 100 RELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFEM 179 (529)
T ss_pred HHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhHHHhh
Confidence 9999999999999887 3444555433 3557999999999998877666677899999999999999999
Q ss_pred ccchhHHHHHHHhCCCCcEEEEcccCCChHHHHHHhccccCCCeeEeeeCCCCc--CceEeeccCCCCCeeeeecCchhh
Q psy6275 179 ERGYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPT--PLQHYLFPNGGDGIHLIVDDNKFK 256 (391)
Q Consensus 179 ~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~~~--~i~~~~~~~~~~~~~~~v~~~~~~ 256 (391)
+|...+..++..++.+.|.++||||+|+. +.++-..-...|..+...-+... .++..+..+..
T Consensus 180 gfqeql~e~l~rl~~~~QTllfSatlp~~--lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~------------- 244 (529)
T KOG0337|consen 180 GFQEQLHEILSRLPESRQTLLFSATLPRD--LVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRK------------- 244 (529)
T ss_pred hhHHHHHHHHHhCCCcceEEEEeccCchh--hHHHHHccCCCCceEEeehhhhcchhhhhheeeecc-------------
Confidence 99999999999999999999999999876 33333344455666543322211 23332222211
Q ss_pred hhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcC-CCcEEEEEcchhhHHHHHHHhhccCCCCh
Q psy6275 257 EHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERN-LAPVIVFSFSKKDCEIYAMQMAKLNFNET 335 (391)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~iIF~~t~~~~~~la~~L~~~g~~~~ 335 (391)
.++...|+.++.... .++++|||.|+.+++.+...|+..|+.+.
T Consensus 245 -----------------------------------a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s 289 (529)
T KOG0337|consen 245 -----------------------------------AEKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGS 289 (529)
T ss_pred -----------------------------------HHHHHHHHHHHhccccccceeEEecccchHHHHHHHHHhcCCCcc
Confidence 144556777666643 35899999999999999999999888765
Q ss_pred --------HHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhcc
Q psy6275 336 --------EEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHH 377 (391)
Q Consensus 336 --------~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h 377 (391)
+-|......|+. .... ++.+|+.+||+||+-
T Consensus 290 ~iysslD~~aRk~~~~~F~~~k~~~-----------lvvTdvaaRG~dipl 329 (529)
T KOG0337|consen 290 DIYSSLDQEARKINGRDFRGRKTSI-----------LVVTDVAARGLDIPL 329 (529)
T ss_pred ccccccChHhhhhccccccCCccce-----------EEEehhhhccCCCcc
Confidence 223322233333 3334 445569999999974
|
|
| >KOG0334|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-32 Score=271.98 Aligned_cols=280 Identities=19% Similarity=0.268 Sum_probs=225.1
Q ss_pred CCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh--------cCCeEEEE
Q psy6275 36 PDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK--------QSQRVIYT 106 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~--------~~~~vlvl 106 (391)
.+|...++...++..++++||. |+++|.+|||+++.|+++|.+|.||||||++|++|++.++. .++-++|+
T Consensus 365 ~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~ 444 (997)
T KOG0334|consen 365 TSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALIL 444 (997)
T ss_pred chHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEE
Confidence 3789999999999999999997 99999999999999999999999999999999999998773 37899999
Q ss_pred cccHHHHHHHHHHHHHhcc----cceeeeCCccc-------CCCCCEEEEcHHHHHHHHhcCcc---ccCccceEEEecc
Q psy6275 107 TPIKALSNQKYREFEEQFK----DVGLITGDVTI-------NPSSSCLIMTTEILRNMLYRGSE---ITREVGWVIFDEI 172 (391)
Q Consensus 107 ~P~~~L~~q~~~~~~~~~~----~v~~~~g~~~~-------~~~~~I~v~Tp~~l~~~l~~~~~---~l~~~~~lViDE~ 172 (391)
+||++|+.|+.+.++.+.. .+..++|+... +..+.|+||||+++.+.+-.+.. .+..+.++|+|||
T Consensus 445 aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~dea 524 (997)
T KOG0334|consen 445 APTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEA 524 (997)
T ss_pred cCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechh
Confidence 9999999999999998887 44456676653 34589999999999988765544 4455669999999
Q ss_pred cccCccccchhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHHhccccCCCeeEeeeCCCCc---CceEeeccCCCCCeee
Q psy6275 173 HYMRDKERGYVWEETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVYTDYRPT---PLQHYLFPNGGDGIHL 248 (391)
Q Consensus 173 h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~~~~~~~~---~i~~~~~~~~~~~~~~ 248 (391)
|.|.+.++.+..-.|+..+++.+|.+++|||++.. +.++..+ ...|+.+... ++.+ .+++.+..+...
T Consensus 525 DrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~v---l~~Pveiiv~-~~svV~k~V~q~v~V~~~e---- 596 (997)
T KOG0334|consen 525 DRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKV---LKKPVEIIVG-GRSVVCKEVTQVVRVCAIE---- 596 (997)
T ss_pred hhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHh---hcCCeeEEEc-cceeEeccceEEEEEecCc----
Confidence 99999999999888999999999999999999887 6677754 3466665544 3322 455555544321
Q ss_pred eecCchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHc-CCCcEEEEEcchhhHHHHHHHh
Q psy6275 249 IVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMER-NLAPVIVFSFSKKDCEIYAMQM 327 (391)
Q Consensus 249 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~iIF~~t~~~~~~la~~L 327 (391)
.+++..|.+++.+. ...++||||.+...|+.+...|
T Consensus 597 -------------------------------------------~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L 633 (997)
T KOG0334|consen 597 -------------------------------------------NEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDL 633 (997)
T ss_pred -------------------------------------------hHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHH
Confidence 13445566655542 2469999999999999999999
Q ss_pred hccCCCCh--------HHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhcc
Q psy6275 328 AKLNFNET--------EEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHH 377 (391)
Q Consensus 328 ~~~g~~~~--------~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h 377 (391)
.+.|++|. .+|+...+.|++ -...|++| +.++||+|+.+
T Consensus 634 ~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaT-----------svvarGLdv~~ 681 (997)
T KOG0334|consen 634 QKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVAT-----------SVVARGLDVKE 681 (997)
T ss_pred HhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEeh-----------hhhhccccccc
Confidence 99998864 678888888887 45666666 58999999854
|
|
| >KOG0347|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-32 Score=258.62 Aligned_cols=279 Identities=16% Similarity=0.176 Sum_probs=200.4
Q ss_pred CCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcC-CcEEEEecCCcchHHHHHHHHHHHHh--------------cC
Q psy6275 37 DLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENN-QSVLVSAHTSAGKTVVAEYAIASSLK--------------QS 100 (391)
Q Consensus 37 ~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~-~~~li~apTGsGKT~~~~~~~~~~l~--------------~~ 100 (391)
-|..+.++.++++.+..+||. ||++|...+|.+..| .+++..|.||||||++|-+|+++.+. .+
T Consensus 182 AW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~ 261 (731)
T KOG0347|consen 182 AWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKY 261 (731)
T ss_pred HHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhcc
Confidence 466779999999999999997 999999999998887 79999999999999999999998442 23
Q ss_pred Ce--EEEEcccHHHHHHHHHHHHHhcc----cceeeeCCccc-------CCCCCEEEEcHHHHHHHHhcCcc---ccCcc
Q psy6275 101 QR--VIYTTPIKALSNQKYREFEEQFK----DVGLITGDVTI-------NPSSSCLIMTTEILRNMLYRGSE---ITREV 164 (391)
Q Consensus 101 ~~--vlvl~P~~~L~~q~~~~~~~~~~----~v~~~~g~~~~-------~~~~~I~v~Tp~~l~~~l~~~~~---~l~~~ 164 (391)
.+ .||++|||+|+.|+.+.+..... .+..++|+... +..++|+|+|||+|+.++..... .++++
T Consensus 262 ~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~v 341 (731)
T KOG0347|consen 262 VKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKV 341 (731)
T ss_pred CcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhc
Confidence 45 99999999999999999998887 55668888774 44789999999999999987643 56789
Q ss_pred ceEEEecccccCccccchhHHHHHHHhC-----CCCcEEEEcccCCCh--HHHHH--------------------Hhccc
Q psy6275 165 GWVIFDEIHYMRDKERGYVWEETLILLS-----DNVRFVFLSATIPNA--SQFAQ--------------------WVSHL 217 (391)
Q Consensus 165 ~~lViDE~h~~~~~~~~~~~~~i~~~~~-----~~~~~i~~SAT~~~~--~~~~~--------------------~l~~~ 217 (391)
.++|+||+|+|.+.+.-..+..++..+. ..+|.+.||||+.-. ..+.. .++ +
T Consensus 342 kcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig-~ 420 (731)
T KOG0347|consen 342 KCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIG-F 420 (731)
T ss_pred eEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhC-c
Confidence 9999999999998877777777777664 468999999998632 11111 111 1
Q ss_pred cCCCeeEeeeCCC--CcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccH
Q psy6275 218 HHQPCHVVYTDYR--PTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNC 295 (391)
Q Consensus 218 ~~~~~~v~~~~~~--~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (391)
.+.|-.+-..... ...+.+..+.|+..+ +-
T Consensus 421 ~~kpkiiD~t~q~~ta~~l~Es~I~C~~~e------------------------------------------------KD 452 (731)
T KOG0347|consen 421 RGKPKIIDLTPQSATASTLTESLIECPPLE------------------------------------------------KD 452 (731)
T ss_pred cCCCeeEecCcchhHHHHHHHHhhcCCccc------------------------------------------------cc
Confidence 1112111111000 001111111111110 00
Q ss_pred HHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCCh--------HHHHHHHHHHHHH-hhhcchhhccCcchHhHH
Q psy6275 296 FKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNET--------EEVKLVDDVFSNA-MDVLSEEDRKLPQIENIL 366 (391)
Q Consensus 296 ~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~~--------~~r~~~~~~~~~~-~~~l~~~d~~~~~~~~~~ 366 (391)
..++.++...+ +++|||||+...+..|+..|...++++- ..|-...+.|++. -.+|++|
T Consensus 453 ~ylyYfl~ryP-GrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaT----------- 520 (731)
T KOG0347|consen 453 LYLYYFLTRYP-GRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIAT----------- 520 (731)
T ss_pred eeEEEEEeecC-CceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEee-----------
Confidence 11222223333 5899999999999999999999888763 4566667777773 3455555
Q ss_pred HHHHhhhhhc
Q psy6275 367 PLLRRGIGIH 376 (391)
Q Consensus 367 ~~l~~GI~~~ 376 (391)
|+.+||+||+
T Consensus 521 DVAARGLDIp 530 (731)
T KOG0347|consen 521 DVAARGLDIP 530 (731)
T ss_pred hhhhccCCCC
Confidence 6999999996
|
|
| >COG1201 Lhr Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.8e-31 Score=265.36 Aligned_cols=284 Identities=25% Similarity=0.335 Sum_probs=212.1
Q ss_pred ccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc--------CCeEEEEcccHHH
Q psy6275 42 PLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ--------SQRVIYTTPIKAL 112 (391)
Q Consensus 42 ~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~--------~~~vlvl~P~~~L 112 (391)
-|++.+.+.++.. |. ||+.|.+||+.+.+|+|++++||||||||.++++|++..+-. +-.+||+.|.|+|
T Consensus 7 ~l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkAL 85 (814)
T COG1201 7 ILDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKAL 85 (814)
T ss_pred hcCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHH
Confidence 4556666677777 64 999999999999999999999999999999999999887632 2579999999999
Q ss_pred HHHHHHHHHHhcc----cceeeeCCcccC-------CCCCEEEEcHHHHHHHHhcC--ccccCccceEEEecccccCccc
Q psy6275 113 SNQKYREFEEQFK----DVGLITGDVTIN-------PSSSCLIMTTEILRNMLYRG--SEITREVGWVIFDEIHYMRDKE 179 (391)
Q Consensus 113 ~~q~~~~~~~~~~----~v~~~~g~~~~~-------~~~~I~v~Tp~~l~~~l~~~--~~~l~~~~~lViDE~h~~~~~~ 179 (391)
.+++...+..+.. .+.+.||+++.. .-++|+++|||.+.-++... ...+.+++++|+||+|.+.+..
T Consensus 86 n~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sK 165 (814)
T COG1201 86 NNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESK 165 (814)
T ss_pred HHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccc
Confidence 9999999998877 677899998753 24799999999998777653 3578899999999999998888
Q ss_pred cchhHHHHHHHhC---CCCcEEEEcccCCChHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhh
Q psy6275 180 RGYVWEETLILLS---DNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFK 256 (391)
Q Consensus 180 ~~~~~~~i~~~~~---~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~ 256 (391)
+|..+...+.++. .+.|.|++|||..+...+++|+.... .++.+........ .+..+.....+.. +.
T Consensus 166 RG~~Lsl~LeRL~~l~~~~qRIGLSATV~~~~~varfL~g~~-~~~~Iv~~~~~k~-~~i~v~~p~~~~~--------~~ 235 (814)
T COG1201 166 RGVQLALSLERLRELAGDFQRIGLSATVGPPEEVAKFLVGFG-DPCEIVDVSAAKK-LEIKVISPVEDLI--------YD 235 (814)
T ss_pred cchhhhhhHHHHHhhCcccEEEeehhccCCHHHHHHHhcCCC-CceEEEEcccCCc-ceEEEEecCCccc--------cc
Confidence 8888765555442 37999999999999999999997532 2555554443322 2222222111100 00
Q ss_pred hhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccC-----
Q psy6275 257 EHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLN----- 331 (391)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g----- 331 (391)
... +......+.+.++++. .+|||+|||..||.++..|.+.+
T Consensus 236 ~~~-------------------------------~~~~~~~i~~~v~~~~--ttLIF~NTR~~aE~l~~~L~~~~~~~i~ 282 (814)
T COG1201 236 EEL-------------------------------WAALYERIAELVKKHR--TTLIFTNTRSGAERLAFRLKKLGPDIIE 282 (814)
T ss_pred cch-------------------------------hHHHHHHHHHHHhhcC--cEEEEEeChHHHHHHHHHHHHhcCCcee
Confidence 000 0012223444444433 89999999999999999998864
Q ss_pred ----CCChHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhccCCC
Q psy6275 332 ----FNETEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHGVK 380 (391)
Q Consensus 332 ----~~~~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~~~ 380 (391)
.-+.+.|...++.+++ .++++++| ..|+-|||+-|.++
T Consensus 283 ~HHgSlSre~R~~vE~~lk~G~lravV~T-----------SSLELGIDiG~vdl 325 (814)
T COG1201 283 VHHGSLSRELRLEVEERLKEGELKAVVAT-----------SSLELGIDIGDIDL 325 (814)
T ss_pred eecccccHHHHHHHHHHHhcCCceEEEEc-----------cchhhccccCCceE
Confidence 2234778888888888 77888888 48999999987665
|
|
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-30 Score=261.25 Aligned_cols=262 Identities=14% Similarity=0.154 Sum_probs=186.2
Q ss_pred CCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeC
Q psy6275 54 YPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITG 132 (391)
Q Consensus 54 ~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g 132 (391)
+||+ |+|+|.++++.+.+|+++++++|||+|||++|++|++.. ++.++|++|+++|+.|+...++...-.+..+.+
T Consensus 21 fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~---~g~tlVisPl~sL~~dqv~~l~~~gi~~~~~~s 97 (607)
T PRK11057 21 FGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL---DGLTLVVSPLISLMKDQVDQLLANGVAAACLNS 97 (607)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc---CCCEEEEecHHHHHHHHHHHHHHcCCcEEEEcC
Confidence 6887 999999999999999999999999999999999998754 678999999999999999999887555555555
Q ss_pred Cccc-----------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccc--cchhHHHH---HHHhCCCCc
Q psy6275 133 DVTI-----------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKE--RGYVWEET---LILLSDNVR 196 (391)
Q Consensus 133 ~~~~-----------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~--~~~~~~~i---~~~~~~~~~ 196 (391)
.... ..+.+++++||+++............+++++|+||||++.+++ +.+.+..+ ...+ ++.+
T Consensus 98 ~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~-p~~~ 176 (607)
T PRK11057 98 TQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQRF-PTLP 176 (607)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHHhC-CCCc
Confidence 4331 2346899999999873221112223479999999999998875 34444333 2233 4689
Q ss_pred EEEEcccCCCh--HHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhhh
Q psy6275 197 FVFLSATIPNA--SQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAA 274 (391)
Q Consensus 197 ~i~~SAT~~~~--~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 274 (391)
++++|||++.. .++...++ ..++........++ ++...+...
T Consensus 177 ~v~lTAT~~~~~~~di~~~l~--l~~~~~~~~~~~r~-nl~~~v~~~--------------------------------- 220 (607)
T PRK11057 177 FMALTATADDTTRQDIVRLLG--LNDPLIQISSFDRP-NIRYTLVEK--------------------------------- 220 (607)
T ss_pred EEEEecCCChhHHHHHHHHhC--CCCeEEEECCCCCC-cceeeeeec---------------------------------
Confidence 99999999875 34555543 22333222222222 222111100
Q ss_pred ccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCC--------hHHHHHHHHHHH
Q psy6275 275 KAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNE--------TEEVKLVDDVFS 346 (391)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~--------~~~r~~~~~~~~ 346 (391)
......+...+....++++||||+|+++|+.++..|++.|+.+ .++|..+.+.|+
T Consensus 221 -----------------~~~~~~l~~~l~~~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~ 283 (607)
T PRK11057 221 -----------------FKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQ 283 (607)
T ss_pred -----------------cchHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHH
Confidence 0123355666666667899999999999999999999876654 367888888887
Q ss_pred H-HhhhcchhhccCcchHhHHHHHHhhhhhc------cCCCCcc
Q psy6275 347 N-AMDVLSEEDRKLPQIENILPLLRRGIGIH------HGVKPYG 383 (391)
Q Consensus 347 ~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~------h~~~~~~ 383 (391)
. .+++|++|+ ++++|||++ |-++|.+
T Consensus 284 ~g~~~VLVaT~-----------a~~~GIDip~V~~VI~~d~P~s 316 (607)
T PRK11057 284 RDDLQIVVATV-----------AFGMGINKPNVRFVVHFDIPRN 316 (607)
T ss_pred CCCCCEEEEec-----------hhhccCCCCCcCEEEEeCCCCC
Confidence 6 668888884 999999986 4566643
|
|
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=267.73 Aligned_cols=265 Identities=17% Similarity=0.199 Sum_probs=186.8
Q ss_pred cCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeee
Q psy6275 53 EYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLIT 131 (391)
Q Consensus 53 ~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~ 131 (391)
.+|+. |+|+|.++|+.++.|+|+++++|||+|||++|++|++.. ++.+|||+|+++|+.++...+....-....+.
T Consensus 455 ~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~---~GiTLVISPLiSLmqDQV~~L~~~GI~Aa~L~ 531 (1195)
T PLN03137 455 VFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC---PGITLVISPLVSLIQDQIMNLLQANIPAASLS 531 (1195)
T ss_pred HcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc---CCcEEEEeCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 46886 999999999999999999999999999999999998764 67899999999999877777766554555566
Q ss_pred CCccc-------------CCCCCEEEEcHHHHHH--HHhcC---ccccCccceEEEecccccCccc--cchhHHHH--HH
Q psy6275 132 GDVTI-------------NPSSSCLIMTTEILRN--MLYRG---SEITREVGWVIFDEIHYMRDKE--RGYVWEET--LI 189 (391)
Q Consensus 132 g~~~~-------------~~~~~I~v~Tp~~l~~--~l~~~---~~~l~~~~~lViDE~h~~~~~~--~~~~~~~i--~~ 189 (391)
++... ....+|+++||+++.. .+.+. ......+.+|||||||++++|+ |.+.+..+ +.
T Consensus 532 s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr 611 (1195)
T PLN03137 532 AGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILK 611 (1195)
T ss_pred CCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHHHHHHH
Confidence 65432 1457899999999852 11111 1123458999999999999886 44545432 22
Q ss_pred HhCCCCcEEEEcccCCCh--HHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHh
Q psy6275 190 LLSDNVRFVFLSATIPNA--SQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVL 267 (391)
Q Consensus 190 ~~~~~~~~i~~SAT~~~~--~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 267 (391)
..-+..+++++|||++.. +++...++. .. ..++.......++.+.++... .
T Consensus 612 ~~fp~vPilALTATAT~~V~eDI~~~L~l--~~-~~vfr~Sf~RpNL~y~Vv~k~-----------k------------- 664 (1195)
T PLN03137 612 QKFPNIPVLALTATATASVKEDVVQALGL--VN-CVVFRQSFNRPNLWYSVVPKT-----------K------------- 664 (1195)
T ss_pred HhCCCCCeEEEEecCCHHHHHHHHHHcCC--CC-cEEeecccCccceEEEEeccc-----------h-------------
Confidence 333468899999999765 556666542 22 233333222223333222100 0
Q ss_pred hhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHc-CCCcEEEEEcchhhHHHHHHHhhccCCCCh--------HHH
Q psy6275 268 ANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMER-NLAPVIVFSFSKKDCEIYAMQMAKLNFNET--------EEV 338 (391)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~iIF~~t~~~~~~la~~L~~~g~~~~--------~~r 338 (391)
.....+.+.+... ...++||||+|+++|+.++..|...|+.+. ++|
T Consensus 665 -------------------------k~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR 719 (1195)
T PLN03137 665 -------------------------KCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQR 719 (1195)
T ss_pred -------------------------hHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHH
Confidence 0112344444432 246899999999999999999998877653 678
Q ss_pred HHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhc------cCCCCcc
Q psy6275 339 KLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIH------HGVKPYG 383 (391)
Q Consensus 339 ~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~------h~~~~~~ 383 (391)
..+.+.|.. .+.+|++|+ ++++|||++ |-+||..
T Consensus 720 ~~vqe~F~~Gei~VLVATd-----------AFGMGIDkPDVR~VIHydlPkS 760 (1195)
T PLN03137 720 AFVQKQWSKDEINIICATV-----------AFGMGINKPDVRFVIHHSLPKS 760 (1195)
T ss_pred HHHHHHHhcCCCcEEEEec-----------hhhcCCCccCCcEEEEcCCCCC
Confidence 888888877 678888885 999999996 5677744
|
|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-30 Score=262.00 Aligned_cols=264 Identities=14% Similarity=0.149 Sum_probs=190.9
Q ss_pred cCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeee
Q psy6275 53 EYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLIT 131 (391)
Q Consensus 53 ~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~ 131 (391)
.+||. |+++|.++|+.+.+|+|+++++|||+|||++|++|++. .++.++|++|+++|+.|+...++.....+..++
T Consensus 8 ~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~---~~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~ 84 (591)
T TIGR01389 8 TFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALL---LKGLTVVISPLISLMKDQVDQLRAAGVAAAYLN 84 (591)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHH---cCCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEe
Confidence 37887 99999999999999999999999999999999999875 367899999999999999999998766667777
Q ss_pred CCccc-----------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccc--cchhHHHHHH---HhCCCC
Q psy6275 132 GDVTI-----------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKE--RGYVWEETLI---LLSDNV 195 (391)
Q Consensus 132 g~~~~-----------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~--~~~~~~~i~~---~~~~~~ 195 (391)
++... ....+|+++||+++............+++++|+||||++.+++ +.+.+..+.. .++ +.
T Consensus 85 s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~-~~ 163 (591)
T TIGR01389 85 STLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAERFP-QV 163 (591)
T ss_pred CCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHhCC-CC
Confidence 76542 2357899999999875443333345689999999999998765 3444444333 333 45
Q ss_pred cEEEEcccCCCh--HHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhh
Q psy6275 196 RFVFLSATIPNA--SQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDA 273 (391)
Q Consensus 196 ~~i~~SAT~~~~--~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 273 (391)
+++++|||++.. .++..+++. ..+........+ .++...+...
T Consensus 164 ~vi~lTAT~~~~~~~~i~~~l~~--~~~~~~~~~~~r-~nl~~~v~~~-------------------------------- 208 (591)
T TIGR01389 164 PRIALTATADAETRQDIRELLRL--ADANEFITSFDR-PNLRFSVVKK-------------------------------- 208 (591)
T ss_pred CEEEEEeCCCHHHHHHHHHHcCC--CCCCeEecCCCC-CCcEEEEEeC--------------------------------
Confidence 699999999765 556776642 122222222122 2222222110
Q ss_pred hccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCC--------hHHHHHHHHHH
Q psy6275 274 AKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNE--------TEEVKLVDDVF 345 (391)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~--------~~~r~~~~~~~ 345 (391)
.+....+.+.+....+.++||||+|++.|+.+++.|...|+++ .++|..+.+.|
T Consensus 209 ------------------~~~~~~l~~~l~~~~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F 270 (591)
T TIGR01389 209 ------------------NNKQKFLLDYLKKHRGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDF 270 (591)
T ss_pred ------------------CCHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHH
Confidence 0122355566666556799999999999999999998876644 36788888877
Q ss_pred HH-HhhhcchhhccCcchHhHHHHHHhhhhhc------cCCCCccc
Q psy6275 346 SN-AMDVLSEEDRKLPQIENILPLLRRGIGIH------HGVKPYGL 384 (391)
Q Consensus 346 ~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~------h~~~~~~~ 384 (391)
.. .+.++++|+ ++++|||++ |.++|...
T Consensus 271 ~~g~~~vlVaT~-----------a~~~GID~p~v~~VI~~~~p~s~ 305 (591)
T TIGR01389 271 LYDDVKVMVATN-----------AFGMGIDKPNVRFVIHYDMPGNL 305 (591)
T ss_pred HcCCCcEEEEec-----------hhhccCcCCCCCEEEEcCCCCCH
Confidence 76 668888774 999999976 56666543
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. |
| >KOG0951|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=263.08 Aligned_cols=287 Identities=22% Similarity=0.289 Sum_probs=214.8
Q ss_pred CCC-CcHHHHHHHHHHhc-CCcEEEEecCCcchHHHHHHHHHHHHhc-----------CCeEEEEcccHHHHHHHHHHHH
Q psy6275 55 PFV-LDPFQKEAILCIEN-NQSVLVSAHTSAGKTVVAEYAIASSLKQ-----------SQRVIYTTPIKALSNQKYREFE 121 (391)
Q Consensus 55 ~~~-~~~~Q~~~i~~i~~-~~~~li~apTGsGKT~~~~~~~~~~l~~-----------~~~vlvl~P~~~L~~q~~~~~~ 121 (391)
|.+ ++++|....++.+. ..|+++|||||+|||..+++.+++.+.. +.+++|++|.++|+.++...|.
T Consensus 306 g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfS 385 (1674)
T KOG0951|consen 306 GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFS 385 (1674)
T ss_pred cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHH
Confidence 444 99999999997654 5799999999999999999999998854 3589999999999999999999
Q ss_pred Hhcc----cceeeeCCcccC----CCCCEEEEcHHHHHHHHhcC--ccccCccceEEEecccccCccccchhHHHHHHHh
Q psy6275 122 EQFK----DVGLITGDVTIN----PSSSCLIMTTEILRNMLYRG--SEITREVGWVIFDEIHYMRDKERGYVWEETLILL 191 (391)
Q Consensus 122 ~~~~----~v~~~~g~~~~~----~~~~I~v~Tp~~l~~~l~~~--~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~ 191 (391)
+.+. .|.-.+|+.... ..++|+|+|||...-.-.+. ....+-++++|+||+|.+.| .+|+.++.+..+.
T Consensus 386 kRla~~GI~V~ElTgD~~l~~~qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhD-dRGpvLESIVaRt 464 (1674)
T KOG0951|consen 386 KRLAPLGITVLELTGDSQLGKEQIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHD-DRGPVLESIVART 464 (1674)
T ss_pred hhccccCcEEEEecccccchhhhhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhccc-ccchHHHHHHHHH
Confidence 8887 555688876643 36899999999875443332 23456789999999998766 5899998777654
Q ss_pred -------CCCCcEEEEcccCCChHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHH
Q psy6275 192 -------SDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAM 264 (391)
Q Consensus 192 -------~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 264 (391)
....+++++|||+||-.+++.+++... ...+.+...+||+|+.|-++.+.. .+-...+
T Consensus 465 ~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~v~~-~glf~fd~syRpvPL~qq~Igi~e--------------k~~~~~~ 529 (1674)
T KOG0951|consen 465 FRRSESTEEGSRLVGLSATLPNYEDVASFLRVDP-EGLFYFDSSYRPVPLKQQYIGITE--------------KKPLKRF 529 (1674)
T ss_pred HHHhhhcccCceeeeecccCCchhhhHHHhccCc-ccccccCcccCcCCccceEecccc--------------CCchHHH
Confidence 247899999999999999999998765 678889999999999999885442 2223334
Q ss_pred HHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCChHHHHHHHHH
Q psy6275 265 NVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNETEEVKLVDDV 344 (391)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~~~~r~~~~~~ 344 (391)
+.|+. .-+-+.+...+..++||||.+|+++-+.|..+++...... -+..+
T Consensus 530 qamNe--------------------------~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~d----tls~f 579 (1674)
T KOG0951|consen 530 QAMNE--------------------------ACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEED----TLSRF 579 (1674)
T ss_pred HHHHH--------------------------HHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhh----HHHHH
Confidence 44442 1122233445557999999999999999999997654332 22222
Q ss_pred HHHH--hhhcchhhccCcchHhHHHHHHhhhhhccCCCCcccccc
Q psy6275 345 FSNA--MDVLSEEDRKLPQIENILPLLRRGIGIHHGVKPYGLWQS 387 (391)
Q Consensus 345 ~~~~--~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~~~~~~~r~~ 387 (391)
.++. ..-+.-+..+......+.++|..|++||||||.+.+|..
T Consensus 580 mre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~ 624 (1674)
T KOG0951|consen 580 MREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDREL 624 (1674)
T ss_pred HhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHH
Confidence 2221 111111222333456789999999999999999998864
|
|
| >KOG0341|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-32 Score=247.38 Aligned_cols=287 Identities=16% Similarity=0.215 Sum_probs=223.6
Q ss_pred CCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHH-----------hcCCeEE
Q psy6275 37 DLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSL-----------KQSQRVI 104 (391)
Q Consensus 37 ~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l-----------~~~~~vl 104 (391)
+|.++.++..++..+++.|+. |||+|.+.+|.+++|++.+-.|-||||||++|.+|++... ..++-.|
T Consensus 171 sF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gL 250 (610)
T KOG0341|consen 171 SFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGL 250 (610)
T ss_pred hhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeE
Confidence 788899999999999999996 9999999999999999999999999999999988876533 2378999
Q ss_pred EEcccHHHHHHHHHHHHHhcc----------cceeeeCCcccC-------CCCCEEEEcHHHHHHHHhcCccccCccceE
Q psy6275 105 YTTPIKALSNQKYREFEEQFK----------DVGLITGDVTIN-------PSSSCLIMTTEILRNMLYRGSEITREVGWV 167 (391)
Q Consensus 105 vl~P~~~L~~q~~~~~~~~~~----------~v~~~~g~~~~~-------~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~l 167 (391)
|++|+|+|+.|++.-+..++. +..+..|+.+.. ...+|+|+||++|.+++.+....+.-.+++
T Consensus 251 iicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL 330 (610)
T KOG0341|consen 251 IICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYL 330 (610)
T ss_pred EEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHh
Confidence 999999999999988887765 445577777653 467899999999999999998888899999
Q ss_pred EEecccccCccccchhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCe
Q psy6275 168 IFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGI 246 (391)
Q Consensus 168 ViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~ 246 (391)
.+||||+|.|.+|...+..++..+...+|.++||||+|.. +.|+. ...-.|+.+-....-..++.
T Consensus 331 ~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAk---SALVKPvtvNVGRAGAAsld----------- 396 (610)
T KOG0341|consen 331 TLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAK---SALVKPVTVNVGRAGAASLD----------- 396 (610)
T ss_pred hhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHH---hhcccceEEecccccccchh-----------
Confidence 9999999999999999999999999999999999999877 54555 33334444433322211110
Q ss_pred eeeecCchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHH
Q psy6275 247 HLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQ 326 (391)
Q Consensus 247 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~ 326 (391)
.++......+ .+++..+++-|.+.. .++||||..+.+++.+.++
T Consensus 397 -------------------ViQevEyVkq----------------EaKiVylLeCLQKT~-PpVLIFaEkK~DVD~IhEY 440 (610)
T KOG0341|consen 397 -------------------VIQEVEYVKQ----------------EAKIVYLLECLQKTS-PPVLIFAEKKADVDDIHEY 440 (610)
T ss_pred -------------------HHHHHHHHHh----------------hhhhhhHHHHhccCC-CceEEEeccccChHHHHHH
Confidence 0010000000 144556666555544 5999999999999999999
Q ss_pred hhccCC--------CChHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhc------cCCCCccc
Q psy6275 327 MAKLNF--------NETEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIH------HGVKPYGL 384 (391)
Q Consensus 327 L~~~g~--------~~~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~------h~~~~~~~ 384 (391)
|--.|+ +..++|..-.+.|+. ..++|++|| +.+.|.||+ +=+||..+
T Consensus 441 LLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATD-----------VASKGLDFp~iqHVINyDMP~eI 502 (610)
T KOG0341|consen 441 LLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATD-----------VASKGLDFPDIQHVINYDMPEEI 502 (610)
T ss_pred HHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEec-----------chhccCCCccchhhccCCChHHH
Confidence 976544 445778777777777 678889886 899999996 35777543
|
|
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-29 Score=267.99 Aligned_cols=264 Identities=16% Similarity=0.122 Sum_probs=181.6
Q ss_pred cCCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc----cce
Q psy6275 53 EYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK----DVG 128 (391)
Q Consensus 53 ~~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~----~v~ 128 (391)
..|++|+++|.++++.+..|++++++||||+|||..++.++......+.+++|++||++|+.|+++.++.+.. .+.
T Consensus 76 ~~G~~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l~~~~~l~~~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~ 155 (1176)
T PRK09401 76 KTGSKPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGLVMSLYLAKKGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVK 155 (1176)
T ss_pred hcCCCCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEE
Confidence 3588999999999999999999999999999999754443333334578999999999999999999999987 233
Q ss_pred eeeCCccc-------------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCcc-----------ccc-hh
Q psy6275 129 LITGDVTI-------------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDK-----------ERG-YV 183 (391)
Q Consensus 129 ~~~g~~~~-------------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~-----------~~~-~~ 183 (391)
.+.|+... ...++|+|+||+++.+++. ......++++|+||||+++++ ++. ..
T Consensus 156 ~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~~~~ 233 (1176)
T PRK09401 156 ILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLGFSEED 233 (1176)
T ss_pred EEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcccchhhHHHhCCCCHHH
Confidence 34443321 2358999999999998775 233456999999999999863 342 34
Q ss_pred HHHHHHHhCC------------------------CCcEEEEcccCCCh-HHHHHHhccccCCCeeEeeeC--CCCcCceE
Q psy6275 184 WEETLILLSD------------------------NVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVYTD--YRPTPLQH 236 (391)
Q Consensus 184 ~~~i~~~~~~------------------------~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~~~~--~~~~~i~~ 236 (391)
++.++..++. ..|++++|||+++. ... ..+. +...+.... ....++.+
T Consensus 234 i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~-~l~~----~ll~~~v~~~~~~~rnI~~ 308 (1176)
T PRK09401 234 IEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV-KLFR----ELLGFEVGSPVFYLRNIVD 308 (1176)
T ss_pred HHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH-HHhh----ccceEEecCcccccCCceE
Confidence 5555554443 68999999999753 211 1111 111111111 11224555
Q ss_pred eeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcc
Q psy6275 237 YLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFS 316 (391)
Q Consensus 237 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t 316 (391)
.++.++ ++...+.+++...+ .++||||++
T Consensus 309 ~yi~~~--------------------------------------------------~k~~~L~~ll~~l~-~~~LIFv~t 337 (1176)
T PRK09401 309 SYIVDE--------------------------------------------------DSVEKLVELVKRLG-DGGLIFVPS 337 (1176)
T ss_pred EEEEcc--------------------------------------------------cHHHHHHHHHHhcC-CCEEEEEec
Confidence 554321 11224445554444 589999999
Q ss_pred hhh---HHHHHHHhhccCCCCh----HHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhcc-------CCCC
Q psy6275 317 KKD---CEIYAMQMAKLNFNET----EEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHH-------GVKP 381 (391)
Q Consensus 317 ~~~---~~~la~~L~~~g~~~~----~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h-------~~~~ 381 (391)
++. |+.+++.|+..|+++. ..+..+ +.|++ .+++|++|+. -+++++||||++| .|+|
T Consensus 338 ~~~~~~ae~l~~~L~~~gi~v~~~hg~l~~~l-~~F~~G~~~VLVatas-------~tdv~aRGIDiP~~IryVI~y~vP 409 (1176)
T PRK09401 338 DKGKEYAEELAEYLEDLGINAELAISGFERKF-EKFEEGEVDVLVGVAS-------YYGVLVRGIDLPERIRYAIFYGVP 409 (1176)
T ss_pred ccChHHHHHHHHHHHHCCCcEEEEeCcHHHHH-HHHHCCCCCEEEEecC-------CCCceeecCCCCcceeEEEEeCCC
Confidence 888 9999999999998865 223334 66665 7789998531 1359999999976 5777
Q ss_pred c
Q psy6275 382 Y 382 (391)
Q Consensus 382 ~ 382 (391)
.
T Consensus 410 ~ 410 (1176)
T PRK09401 410 K 410 (1176)
T ss_pred C
Confidence 5
|
|
| >KOG0350|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-30 Score=238.93 Aligned_cols=265 Identities=20% Similarity=0.258 Sum_probs=183.2
Q ss_pred CCccCCCC-CcHHHHHHHHHHh---------cCCcEEEEecCCcchHHHHHHHHHHHHhcC----CeEEEEcccHHHHHH
Q psy6275 50 PAREYPFV-LDPFQKEAILCIE---------NNQSVLVSAHTSAGKTVVAEYAIASSLKQS----QRVIYTTPIKALSNQ 115 (391)
Q Consensus 50 ~~~~~~~~-~~~~Q~~~i~~i~---------~~~~~li~apTGsGKT~~~~~~~~~~l~~~----~~vlvl~P~~~L~~q 115 (391)
.+..++.. .+|+|...+|.++ ..+++.+.||||||||++|.+|+.+.+... -|++|++|+++|+.|
T Consensus 151 ~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~Q 230 (620)
T KOG0350|consen 151 LLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQ 230 (620)
T ss_pred HHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHH
Confidence 36667776 8999999999872 258999999999999999999999998654 589999999999999
Q ss_pred HHHHHHHhccc----ceeeeCCcccCC------------CCCEEEEcHHHHHHHHhc-CccccCccceEEEecccccCcc
Q psy6275 116 KYREFEEQFKD----VGLITGDVTINP------------SSSCLIMTTEILRNMLYR-GSEITREVGWVIFDEIHYMRDK 178 (391)
Q Consensus 116 ~~~~~~~~~~~----v~~~~g~~~~~~------------~~~I~v~Tp~~l~~~l~~-~~~~l~~~~~lViDE~h~~~~~ 178 (391)
+++.|.++... |+.+.|...... ..+|+|+||++|.+++.+ ....+++++++||||||+|++.
T Consensus 231 V~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~q 310 (620)
T KOG0350|consen 231 VYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQ 310 (620)
T ss_pred HHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHHHH
Confidence 99999999984 444555544311 348999999999999985 4567899999999999999988
Q ss_pred ccchhHHHHHHHhC----------------------------------CCCcEEEEcccCCCh-HHHHHHhccccCCCee
Q psy6275 179 ERGYVWEETLILLS----------------------------------DNVRFVFLSATIPNA-SQFAQWVSHLHHQPCH 223 (391)
Q Consensus 179 ~~~~~~~~i~~~~~----------------------------------~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~ 223 (391)
.|...+..++.+.. +..+.+.+|||+... ..+.++ . ...|..
T Consensus 311 sfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l-~--l~~Prl 387 (620)
T KOG0350|consen 311 SFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDL-T--LHIPRL 387 (620)
T ss_pred HHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhh-h--cCCCce
Confidence 77777666655431 123356677777654 333332 1 122211
Q ss_pred Eeee-----CC-CCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHH
Q psy6275 224 VVYT-----DY-RPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFK 297 (391)
Q Consensus 224 v~~~-----~~-~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (391)
..+. .+ -|..+.+..+.+... -+-..
T Consensus 388 ~~v~~~~~~ryslp~~l~~~~vv~~~~------------------------------------------------~kpl~ 419 (620)
T KOG0350|consen 388 FHVSKPLIGRYSLPSSLSHRLVVTEPK------------------------------------------------FKPLA 419 (620)
T ss_pred EEeecccceeeecChhhhhceeecccc------------------------------------------------cchHh
Confidence 1111 11 122333333322210 01124
Q ss_pred HHHHHHHcCCCcEEEEEcchhhHHHHHHHhh-cc---CCCC--------hHHHHHHHHHHHH-HhhhcchhhccCcchHh
Q psy6275 298 IVKMIMERNLAPVIVFSFSKKDCEIYAMQMA-KL---NFNE--------TEEVKLVDDVFSN-AMDVLSEEDRKLPQIEN 364 (391)
Q Consensus 298 l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~-~~---g~~~--------~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~ 364 (391)
+...+...+..++|+|+++...+..++..|. .. ..+. ..+|....+.|+. .+.+|+++
T Consensus 420 ~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcS--------- 490 (620)
T KOG0350|consen 420 VYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICS--------- 490 (620)
T ss_pred HHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEeh---------
Confidence 5566666777899999999999999999997 22 1111 2445555555555 66666665
Q ss_pred HHHHHHhhhhhc
Q psy6275 365 ILPLLRRGIGIH 376 (391)
Q Consensus 365 ~~~~l~~GI~~~ 376 (391)
|+++||||+.
T Consensus 491 --D~laRGiDv~ 500 (620)
T KOG0350|consen 491 --DALARGIDVN 500 (620)
T ss_pred --hhhhcCCccc
Confidence 5999999984
|
|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-28 Score=255.85 Aligned_cols=260 Identities=22% Similarity=0.235 Sum_probs=185.1
Q ss_pred cCCCCccCCCCCcHHHHHHHHHHhcC------CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHH
Q psy6275 47 KEKPAREYPFVLDPFQKEAILCIENN------QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREF 120 (391)
Q Consensus 47 ~~~~~~~~~~~~~~~Q~~~i~~i~~~------~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~ 120 (391)
.......++|+||+.|.+||+.+.++ ++.+++||||+|||.+|+.+++..+..+.+++|++||++|+.|++..+
T Consensus 441 ~~~~~~~~~f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f 520 (926)
T TIGR00580 441 QQEFEDSFPFEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETF 520 (926)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHH
Confidence 34455668999999999999998764 789999999999999999999999888999999999999999999999
Q ss_pred HHhcc----cceeeeCCccc-----------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHH
Q psy6275 121 EEQFK----DVGLITGDVTI-----------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWE 185 (391)
Q Consensus 121 ~~~~~----~v~~~~g~~~~-----------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~ 185 (391)
++.++ ++..++|.... ..+++|+|+||..+ .....+++++++|+||+|++ +....
T Consensus 521 ~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L~llVIDEahrf-----gv~~~ 590 (926)
T TIGR00580 521 KERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL-----QKDVKFKDLGLLIIDEEQRF-----GVKQK 590 (926)
T ss_pred HHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh-----hCCCCcccCCEEEeeccccc-----chhHH
Confidence 99876 44556665431 23579999999532 23446789999999999985 44445
Q ss_pred HHHHHhCCCCcEEEEcccCCChHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHH
Q psy6275 186 ETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMN 265 (391)
Q Consensus 186 ~i~~~~~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 265 (391)
..+..++.++++++||||+.+. .+...+.. ..++..+........+++.++.... ..
T Consensus 591 ~~L~~~~~~~~vL~~SATpipr-tl~~~l~g-~~d~s~I~~~p~~R~~V~t~v~~~~--------------~~------- 647 (926)
T TIGR00580 591 EKLKELRTSVDVLTLSATPIPR-TLHMSMSG-IRDLSIIATPPEDRLPVRTFVMEYD--------------PE------- 647 (926)
T ss_pred HHHHhcCCCCCEEEEecCCCHH-HHHHHHhc-CCCcEEEecCCCCccceEEEEEecC--------------HH-------
Confidence 5666677789999999997432 23222211 1222222222222224444443111 00
Q ss_pred HhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhcc----------CCCCh
Q psy6275 266 VLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKL----------NFNET 335 (391)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~----------g~~~~ 335 (391)
.....+.+.+. .+++++|||++++.++.+++.|.+. |-...
T Consensus 648 ---------------------------~i~~~i~~el~--~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~ 698 (926)
T TIGR00580 648 ---------------------------LVREAIRRELL--RGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTE 698 (926)
T ss_pred ---------------------------HHHHHHHHHHH--cCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCH
Confidence 00112223232 2468999999999999999999874 22234
Q ss_pred HHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhccCC
Q psy6275 336 EEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHGV 379 (391)
Q Consensus 336 ~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~~ 379 (391)
.+|..+++.|++ ..++|++|+ ++++|||++.++
T Consensus 699 ~eRe~im~~F~~Gk~~ILVaT~-----------iie~GIDIp~v~ 732 (926)
T TIGR00580 699 NELEEVMLEFYKGEFQVLVCTT-----------IIETGIDIPNAN 732 (926)
T ss_pred HHHHHHHHHHHcCCCCEEEECC-----------hhhcccccccCC
Confidence 778888888887 678888885 999999998654
|
All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families. |
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-28 Score=258.66 Aligned_cols=271 Identities=19% Similarity=0.233 Sum_probs=191.8
Q ss_pred CCCcccccccccCCCCccCCCCCcHHHHHHHHHHhcC------CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEccc
Q psy6275 36 PDLEYQPLAQSKEKPAREYPFVLDPFQKEAILCIENN------QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPI 109 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~~~~~Q~~~i~~i~~~------~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~ 109 (391)
.++.+.+.......+...++|+||+.|.+||+.+.++ ++++++|+||+|||.+++.++...+..+.+++|++||
T Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~g~qvlvLvPT 658 (1147)
T PRK10689 579 EGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPT 658 (1147)
T ss_pred cCCCCCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHcCCeEEEEeCc
Confidence 3444444445566778889999999999999998776 8999999999999999998888888889999999999
Q ss_pred HHHHHHHHHHHHHhcc----cceeeeCCccc-----------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccc
Q psy6275 110 KALSNQKYREFEEQFK----DVGLITGDVTI-----------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHY 174 (391)
Q Consensus 110 ~~L~~q~~~~~~~~~~----~v~~~~g~~~~-----------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~ 174 (391)
++|+.|++..+++.+. .+..++|..+. ....+|+|+||+.+. ....+.+++++|+||+|+
T Consensus 659 ~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~-----~~v~~~~L~lLVIDEahr 733 (1147)
T PRK10689 659 TLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ-----SDVKWKDLGLLIVDEEHR 733 (1147)
T ss_pred HHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh-----CCCCHhhCCEEEEechhh
Confidence 9999999999998765 34456665432 135799999997432 233467999999999998
Q ss_pred cCccccchhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCc
Q psy6275 175 MRDKERGYVWEETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDN 253 (391)
Q Consensus 175 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~ 253 (391)
+ +......+..++.++|+++||||+.+. ..++.. ...++..+........++++++.....
T Consensus 734 f-----G~~~~e~lk~l~~~~qvLl~SATpiprtl~l~~~---gl~d~~~I~~~p~~r~~v~~~~~~~~~---------- 795 (1147)
T PRK10689 734 F-----GVRHKERIKAMRADVDILTLTATPIPRTLNMAMS---GMRDLSIIATPPARRLAVKTFVREYDS---------- 795 (1147)
T ss_pred c-----chhHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHh---hCCCcEEEecCCCCCCCceEEEEecCc----------
Confidence 7 333344556677889999999997543 333221 122343333322222344444321110
Q ss_pred hhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhcc--C
Q psy6275 254 KFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKL--N 331 (391)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~--g 331 (391)
. .....+...+. .+++++||||+++.++.+++.|.+. +
T Consensus 796 ----~----------------------------------~~k~~il~el~--r~gqv~vf~n~i~~ie~la~~L~~~~p~ 835 (1147)
T PRK10689 796 ----L----------------------------------VVREAILREIL--RGGQVYYLYNDVENIQKAAERLAELVPE 835 (1147)
T ss_pred ----H----------------------------------HHHHHHHHHHh--cCCeEEEEECCHHHHHHHHHHHHHhCCC
Confidence 0 00112333333 2458999999999999999999875 2
Q ss_pred --------CCChHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhccCCC
Q psy6275 332 --------FNETEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHGVK 380 (391)
Q Consensus 332 --------~~~~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~~~ 380 (391)
-...++|..++..|++ ..++|++|+ ++++|||++++++
T Consensus 836 ~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTd-----------IierGIDIP~v~~ 882 (1147)
T PRK10689 836 ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-----------IIETGIDIPTANT 882 (1147)
T ss_pred CcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECc-----------hhhcccccccCCE
Confidence 2234678888887777 778888885 9999999987654
|
|
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-28 Score=265.77 Aligned_cols=271 Identities=13% Similarity=0.073 Sum_probs=190.9
Q ss_pred CCCcc-CCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc--
Q psy6275 49 KPARE-YPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK-- 125 (391)
Q Consensus 49 ~~~~~-~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~-- 125 (391)
..+++ +||+|+++|.++++.+.+|++++++||||+|||++++.+.+....++.+++|++||++|+.|+++.++.+..
T Consensus 70 ~~f~~~~G~~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~ 149 (1638)
T PRK14701 70 EFFEKITGFEFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLALKGKKCYIILPTTLLVKQTVEKIESFCEKA 149 (1638)
T ss_pred HHHHHhhCCCCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHHHhhc
Confidence 34444 789999999999999999999999999999999976666655545678999999999999999999998765
Q ss_pred ----cceeeeCCccc-----------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCcc-----------c
Q psy6275 126 ----DVGLITGDVTI-----------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDK-----------E 179 (391)
Q Consensus 126 ----~v~~~~g~~~~-----------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~-----------~ 179 (391)
.+..++|+.+. ..+++|+|+||+++...+.... ..+++++|+||||+|+++ +
T Consensus 150 ~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~--~~~i~~iVVDEAD~ml~~~knid~~L~llG 227 (1638)
T PRK14701 150 NLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMK--HLKFDFIFVDDVDAFLKASKNIDRSLQLLG 227 (1638)
T ss_pred CCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHh--hCCCCEEEEECceeccccccccchhhhcCC
Confidence 33456676542 2257999999999887665422 257999999999999863 4
Q ss_pred cchhHHH----HHH----------------------HhCCCCc-EEEEcccCCChHHHHHHhccccCCCeeEeeeCCCCc
Q psy6275 180 RGYVWEE----TLI----------------------LLSDNVR-FVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPT 232 (391)
Q Consensus 180 ~~~~~~~----i~~----------------------~~~~~~~-~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~~~ 232 (391)
|...+.. ++. .++...| .+++|||++...+...++. ++..+.....++.
T Consensus 228 F~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~~----~~l~f~v~~~~~~ 303 (1638)
T PRK14701 228 FYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKLYR----ELLGFEVGSGRSA 303 (1638)
T ss_pred ChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHHhh----cCeEEEecCCCCC
Confidence 4444432 211 1234455 5679999975433444432 3333333333322
Q ss_pred --CceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcE
Q psy6275 233 --PLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPV 310 (391)
Q Consensus 233 --~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 310 (391)
.+.+.++.+..+ . ...+.+.+... +.++
T Consensus 304 lr~i~~~yi~~~~~------------------------------------------------~-k~~L~~ll~~~-g~~g 333 (1638)
T PRK14701 304 LRNIVDVYLNPEKI------------------------------------------------I-KEHVRELLKKL-GKGG 333 (1638)
T ss_pred CCCcEEEEEECCHH------------------------------------------------H-HHHHHHHHHhC-CCCe
Confidence 355554432210 0 12444555544 3589
Q ss_pred EEEEcchhh---HHHHHHHhhccCCCCh---HHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhcc------
Q psy6275 311 IVFSFSKKD---CEIYAMQMAKLNFNET---EEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHH------ 377 (391)
Q Consensus 311 iIF~~t~~~---~~~la~~L~~~g~~~~---~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h------ 377 (391)
||||+|++. |+.+++.|.+.|+++. ..|....+.|++ ..++|++|+... ++++||||++|
T Consensus 334 IVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~R~~~l~~F~~G~~~VLVaT~s~~-------gvaaRGIDiP~~Vryvi 406 (1638)
T PRK14701 334 LIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAKNKKGFDLFEEGEIDYLIGVATYY-------GTLVRGLDLPERIRFAV 406 (1638)
T ss_pred EEEEeccccchHHHHHHHHHHHCCCeEEEecchHHHHHHHHHcCCCCEEEEecCCC-------CeeEecCccCCccCEEE
Confidence 999999886 5899999999998854 456677777776 779999995322 38999999986
Q ss_pred -CCCCc
Q psy6275 378 -GVKPY 382 (391)
Q Consensus 378 -~~~~~ 382 (391)
.|||.
T Consensus 407 ~~~~Pk 412 (1638)
T PRK14701 407 FYGVPK 412 (1638)
T ss_pred EeCCCC
Confidence 68887
|
|
| >KOG0344|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-29 Score=237.49 Aligned_cols=279 Identities=20% Similarity=0.247 Sum_probs=211.3
Q ss_pred ccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc--------CCeEEEEcccHHH
Q psy6275 42 PLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ--------SQRVIYTTPIKAL 112 (391)
Q Consensus 42 ~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~--------~~~vlvl~P~~~L 112 (391)
.....+..++...+|. |+++|.+|+|.+..+++++.+||||||||++|.+|++..+.. +.+++|+.|+++|
T Consensus 142 ~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreL 221 (593)
T KOG0344|consen 142 SMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTREL 221 (593)
T ss_pred hhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHH
Confidence 3445567788899997 999999999999999999999999999999999999998843 4689999999999
Q ss_pred HHHHHHHHHHhc--c----cceeeeCCcc--------cCCCCCEEEEcHHHHHHHHhcCc--cccCccceEEEecccccC
Q psy6275 113 SNQKYREFEEQF--K----DVGLITGDVT--------INPSSSCLIMTTEILRNMLYRGS--EITREVGWVIFDEIHYMR 176 (391)
Q Consensus 113 ~~q~~~~~~~~~--~----~v~~~~g~~~--------~~~~~~I~v~Tp~~l~~~l~~~~--~~l~~~~~lViDE~h~~~ 176 (391)
+.|++.++.++. . .+..+..... .....++++.||-++...+.... ..++.+.++|+||+|.+.
T Consensus 222 a~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lf 301 (593)
T KOG0344|consen 222 AAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLF 301 (593)
T ss_pred HHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhh
Confidence 999999999998 3 2222222211 12246899999999999988765 678899999999999998
Q ss_pred cc-ccchhHHHHHHHhC-CCCcEEEEcccCCChHHHHHHhccccCCCeeEeeeCCCC--cCceEeeccCCCCCeeeeecC
Q psy6275 177 DK-ERGYVWEETLILLS-DNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRP--TPLQHYLFPNGGDGIHLIVDD 252 (391)
Q Consensus 177 ~~-~~~~~~~~i~~~~~-~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~~--~~i~~~~~~~~~~~~~~~v~~ 252 (391)
+. .+...++.++.... ++..+-+||||.+.. +.+|....+.++..+....... ..++|..+.++..
T Consensus 302 e~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~--VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF~gse-------- 371 (593)
T KOG0344|consen 302 EPEFFVEQLADIYSACQSPDIRVALFSATISVY--VEEWAELIKSDLKRVIVGLRNSANETVDQELVFCGSE-------- 371 (593)
T ss_pred ChhhHHHHHHHHHHHhcCcchhhhhhhccccHH--HHHHHHHhhccceeEEEecchhHhhhhhhhheeeecc--------
Confidence 87 67777777777653 578888999998765 6666666666666665554322 2455555554432
Q ss_pred chhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhh-ccC
Q psy6275 253 NKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMA-KLN 331 (391)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~-~~g 331 (391)
..++..+.+.+...-..+++||+.+.++|..|...|. -.+
T Consensus 372 ---------------------------------------~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~ 412 (593)
T KOG0344|consen 372 ---------------------------------------KGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIYDN 412 (593)
T ss_pred ---------------------------------------hhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhccC
Confidence 1234455555554445689999999999999999993 223
Q ss_pred CC--------ChHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhccCCC
Q psy6275 332 FN--------ETEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHGVK 380 (391)
Q Consensus 332 ~~--------~~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~~~ 380 (391)
++ ....|+..++.|+. .+.+|++| ++++|||||+.++|
T Consensus 413 i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicT-----------dll~RGiDf~gvn~ 459 (593)
T KOG0344|consen 413 INVDVIHGERSQKQRDETMERFRIGKIWVLICT-----------DLLARGIDFKGVNL 459 (593)
T ss_pred cceeeEecccchhHHHHHHHHHhccCeeEEEeh-----------hhhhccccccCcce
Confidence 32 33567777777777 77888877 49999999988776
|
|
| >PRK09751 putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.4e-28 Score=257.62 Aligned_cols=261 Identities=26% Similarity=0.311 Sum_probs=175.2
Q ss_pred EEecCCcchHHHHHHHHHHHHh-------------cCCeEEEEcccHHHHHHHHHHHHHhc---------------c-cc
Q psy6275 77 VSAHTSAGKTVVAEYAIASSLK-------------QSQRVIYTTPIKALSNQKYREFEEQF---------------K-DV 127 (391)
Q Consensus 77 i~apTGsGKT~~~~~~~~~~l~-------------~~~~vlvl~P~~~L~~q~~~~~~~~~---------------~-~v 127 (391)
|+||||||||++|.+|++..+. .+.++|||+|+++|+.|+.+.++... + .+
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5799999999999999888763 24689999999999999999886411 1 56
Q ss_pred eeeeCCcccC-------CCCCEEEEcHHHHHHHHhcC-ccccCccceEEEecccccCccccchhHHHHHH----HhCCCC
Q psy6275 128 GLITGDVTIN-------PSSSCLIMTTEILRNMLYRG-SEITREVGWVIFDEIHYMRDKERGYVWEETLI----LLSDNV 195 (391)
Q Consensus 128 ~~~~g~~~~~-------~~~~I~v~Tp~~l~~~l~~~-~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~----~~~~~~ 195 (391)
+..+|+.+.+ ..++|+|+||+++..++.+. ...++++++||+||+|.+.+..+|..+...+. .++.+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 7799987642 35799999999999877543 35689999999999999987777776654444 445679
Q ss_pred cEEEEcccCCChHHHHHHhccccCCCeeEeeeC-CCCcCceEeeccCCC-CCeeeeecCchhhhhchHHHHHHhhhhhhh
Q psy6275 196 RFVFLSATIPNASQFAQWVSHLHHQPCHVVYTD-YRPTPLQHYLFPNGG-DGIHLIVDDNKFKEHNYQVAMNVLANAGDA 273 (391)
Q Consensus 196 ~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~-~~~~~i~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 273 (391)
|+|++|||+++.+++++|++. ..++.++... .++..++.+ ++... ..+.. .+.. ........
T Consensus 161 QrIgLSATI~n~eevA~~L~g--~~pv~Iv~~~~~r~~~l~v~-vp~~d~~~~~~-~~~~-~~~~~~~~----------- 224 (1490)
T PRK09751 161 QRIGLSATVRSASDVAAFLGG--DRPVTVVNPPAMRHPQIRIV-VPVANMDDVSS-VASG-TGEDSHAG----------- 224 (1490)
T ss_pred eEEEEEeeCCCHHHHHHHhcC--CCCEEEECCCCCcccceEEE-EecCchhhccc-cccc-cccccchh-----------
Confidence 999999999998999999863 2355554332 223344422 22111 00000 0000 00000000
Q ss_pred hccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhcc-----------------------
Q psy6275 274 AKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKL----------------------- 330 (391)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~----------------------- 330 (391)
+ ....++.....++..+. ...++|||||||+.|+.++..|++.
T Consensus 225 ---------r---~~~i~~~v~~~il~~i~--~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (1490)
T PRK09751 225 ---------R---EGSIWPYIETGILDEVL--RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSG 290 (1490)
T ss_pred ---------h---hhhhhHHHHHHHHHHHh--cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccc
Confidence 0 00000011112333322 2458999999999999999998753
Q ss_pred ------------------CCCChHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhccC
Q psy6275 331 ------------------NFNETEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHG 378 (391)
Q Consensus 331 ------------------g~~~~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~ 378 (391)
|.-+.++|..+++.|++ .++++++|+ .+++||||.+.
T Consensus 291 ~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATs-----------sLELGIDIg~V 346 (1490)
T PRK09751 291 ATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATS-----------SLELGIDMGAV 346 (1490)
T ss_pred cchhccccccceeeeeccccCCHHHHHHHHHHHHhCCceEEEeCc-----------HHHccCCcccC
Confidence 11224788899999998 678888884 99999999753
|
|
| >TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.4e-28 Score=243.87 Aligned_cols=273 Identities=14% Similarity=0.115 Sum_probs=169.7
Q ss_pred CCCCCcHHHHHHHHHHhcCC-cEEEEecCCcchHHHHHHHHHHHH--hc-CCeEEEEcccHHHHHHHHHHHHHhccc---
Q psy6275 54 YPFVLDPFQKEAILCIENNQ-SVLVSAHTSAGKTVVAEYAIASSL--KQ-SQRVIYTTPIKALSNQKYREFEEQFKD--- 126 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i~~~~-~~li~apTGsGKT~~~~~~~~~~l--~~-~~~vlvl~P~~~L~~q~~~~~~~~~~~--- 126 (391)
.||+|+|||.++++.+..|+ ++++.+|||||||.++..+.+... .. ..++++++|+|+|+.|+++.+.++.+.
T Consensus 12 ~G~~PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~ 91 (844)
T TIGR02621 12 HGYSPFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGERLPD 91 (844)
T ss_pred hCCCCCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHHHHHHhcc
Confidence 58889999999999999998 577889999999996654443221 11 235666789999999999999888752
Q ss_pred ------------------------ceeeeCCcccC-------CCCCEEEEcHHHHHHHHhc---------Ccc---ccCc
Q psy6275 127 ------------------------VGLITGDVTIN-------PSSSCLIMTTEILRNMLYR---------GSE---ITRE 163 (391)
Q Consensus 127 ------------------------v~~~~g~~~~~-------~~~~I~v~Tp~~l~~~l~~---------~~~---~l~~ 163 (391)
+..++|+...+ ..++|+|+|++.+.+..-. .+. .+.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~L~~ 171 (844)
T TIGR02621 92 VPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGFLGQ 171 (844)
T ss_pred cchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccccccccccccchhhhhcc
Confidence 34467876643 3578999997655432110 001 2678
Q ss_pred cceEEEecccccCccccchhHHHHHHHh--CC---CCcEEEEcccCCCh-HHHHHHhccccCCCeeEeeeCCCC--cCce
Q psy6275 164 VGWVIFDEIHYMRDKERGYVWEETLILL--SD---NVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVYTDYRP--TPLQ 235 (391)
Q Consensus 164 ~~~lViDE~h~~~~~~~~~~~~~i~~~~--~~---~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~~~~~~~--~~i~ 235 (391)
+.++|+|||| +++++...+..|+..+ +. ..|+++||||++.. ..+...+. .++..+.....+. ..+.
T Consensus 172 v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~---~~p~~i~V~~~~l~a~ki~ 246 (844)
T TIGR02621 172 DALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLS---AEDYKHPVLKKRLAAKKIV 246 (844)
T ss_pred ceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHc---cCCceeecccccccccceE
Confidence 9999999999 5677888888888864 33 26999999999865 44443332 2333222211111 1223
Q ss_pred EeeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEc
Q psy6275 236 HYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSF 315 (391)
Q Consensus 236 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~ 315 (391)
+++ .++. . .... ..+..+...+. ..++++|||||
T Consensus 247 q~v-~v~~---------e----~Kl~-------------------------------~lv~~L~~ll~-e~g~~vLVF~N 280 (844)
T TIGR02621 247 KLV-PPSD---------E----KFLS-------------------------------TMVKELNLLMK-DSGGAILVFCR 280 (844)
T ss_pred EEE-ecCh---------H----HHHH-------------------------------HHHHHHHHHHh-hCCCcEEEEEC
Confidence 321 1110 0 0000 01112222222 34568999999
Q ss_pred chhhHHHHHHHhhccCC------CChHHHH-----HHHHHHHHHh-hhcchhhccCcchHhHHHHHHhhhhhcc
Q psy6275 316 SKKDCEIYAMQMAKLNF------NETEEVK-----LVDDVFSNAM-DVLSEEDRKLPQIENILPLLRRGIGIHH 377 (391)
Q Consensus 316 t~~~~~~la~~L~~~g~------~~~~~r~-----~~~~~~~~~~-~~l~~~d~~~~~~~~~~~~l~~GI~~~h 377 (391)
|++.|+.+++.|.+.++ ....+|. .+++.|++.. ..-.+.......+++.|+++++||||..
T Consensus 281 Tv~~Aq~L~~~L~~~g~~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~ 354 (844)
T TIGR02621 281 TVKHVRKVFAKLPKEKFELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA 354 (844)
T ss_pred CHHHHHHHHHHHHhcCCeEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc
Confidence 99999999999998765 2235565 4455565410 0000000011234566679999999963
|
This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs. |
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-27 Score=241.54 Aligned_cols=259 Identities=19% Similarity=0.228 Sum_probs=178.4
Q ss_pred CCCccCCCCCcHHHHHHHHHHhcC------CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHH
Q psy6275 49 KPAREYPFVLDPFQKEAILCIENN------QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEE 122 (391)
Q Consensus 49 ~~~~~~~~~~~~~Q~~~i~~i~~~------~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~ 122 (391)
.....++|+||++|.++++.+.++ .+.+++||||||||.+|++|++..+..+.+++|++||++|+.|+++.+++
T Consensus 253 ~~~~~l~f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~ 332 (681)
T PRK10917 253 KFLASLPFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKK 332 (681)
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHH
Confidence 345667999999999999998765 48999999999999999999999999999999999999999999999999
Q ss_pred hcc----cceeeeCCccc-----------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHH
Q psy6275 123 QFK----DVGLITGDVTI-----------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEET 187 (391)
Q Consensus 123 ~~~----~v~~~~g~~~~-----------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i 187 (391)
++. ++.+++|+... ...++|+|+||+.+.. ...+.+++++|+||+|++. ......
T Consensus 333 l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~Hrfg-----~~qr~~ 402 (681)
T PRK10917 333 LLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQHRFG-----VEQRLA 402 (681)
T ss_pred HHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechhhhh-----HHHHHH
Confidence 885 56778998762 2368999999987642 3347799999999999863 333334
Q ss_pred HHHhCCCCcEEEEcccCCChHHHHHHhccccCCCeeEeee-CCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHH
Q psy6275 188 LILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYT-DYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNV 266 (391)
Q Consensus 188 ~~~~~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~-~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 266 (391)
+......+++++||||+... .++-.+.. .-...++.. .....++..++..... ..
T Consensus 403 l~~~~~~~~iL~~SATp~pr-tl~~~~~g--~~~~s~i~~~p~~r~~i~~~~~~~~~----------------~~----- 458 (681)
T PRK10917 403 LREKGENPHVLVMTATPIPR-TLAMTAYG--DLDVSVIDELPPGRKPITTVVIPDSR----------------RD----- 458 (681)
T ss_pred HHhcCCCCCEEEEeCCCCHH-HHHHHHcC--CCceEEEecCCCCCCCcEEEEeCccc----------------HH-----
Confidence 44445568999999997433 22221111 111111111 1111234443332110 00
Q ss_pred hhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcch--------hhHHHHHHHhhcc--------
Q psy6275 267 LANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSK--------KDCEIYAMQMAKL-------- 330 (391)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~--------~~~~~la~~L~~~-------- 330 (391)
..+..+.+.+ ..+.+++|||+.. ..++.+++.|.+.
T Consensus 459 --------------------------~~~~~i~~~~--~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~ 510 (681)
T PRK10917 459 --------------------------EVYERIREEI--AKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGL 510 (681)
T ss_pred --------------------------HHHHHHHHHH--HcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEE
Confidence 0011222222 2356999999954 4556677777654
Q ss_pred --CCCChHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhccCCC
Q psy6275 331 --NFNETEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHGVK 380 (391)
Q Consensus 331 --g~~~~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~~~ 380 (391)
|-....+|..+++.|++ .+++|++|+ ++++|||++++++
T Consensus 511 lHG~m~~~eR~~i~~~F~~g~~~ILVaT~-----------vie~GiDip~v~~ 552 (681)
T PRK10917 511 LHGRMKPAEKDAVMAAFKAGEIDILVATT-----------VIEVGVDVPNATV 552 (681)
T ss_pred EeCCCCHHHHHHHHHHHHcCCCCEEEECc-----------ceeeCcccCCCcE
Confidence 12234788888888888 668888884 9999999987544
|
|
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-27 Score=253.79 Aligned_cols=258 Identities=16% Similarity=0.119 Sum_probs=174.0
Q ss_pred cCCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHH-hcCCeEEEEcccHHHHHHHHHHHHHhccc-----
Q psy6275 53 EYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSL-KQSQRVIYTTPIKALSNQKYREFEEQFKD----- 126 (391)
Q Consensus 53 ~~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l-~~~~~vlvl~P~~~L~~q~~~~~~~~~~~----- 126 (391)
..|+.|+++|+.+++.+..|++++++||||+|||. |.+++...+ ..+.+++|++||++|+.|+++.+..+...
T Consensus 74 ~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~ 152 (1171)
T TIGR01054 74 AVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAKKGKRCYIILPTTLLVIQVAEKISSLAEKAGVGT 152 (1171)
T ss_pred hcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHhcCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCce
Confidence 35678999999999999999999999999999997 444544433 45789999999999999999999998752
Q ss_pred --ceeeeCCcccC-----------CCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCcc-----------ccch
Q psy6275 127 --VGLITGDVTIN-----------PSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDK-----------ERGY 182 (391)
Q Consensus 127 --v~~~~g~~~~~-----------~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~-----------~~~~ 182 (391)
++.++|+.+.. ..++|+|+||+++...+.... ..++++|+||||.|++. ++..
T Consensus 153 ~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~---~~~~~iVvDEaD~~L~~~k~vd~il~llGF~~ 229 (1171)
T TIGR01054 153 VNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG---PKFDFIFVDDVDALLKASKNVDKLLKLLGFSE 229 (1171)
T ss_pred eeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc---CCCCEEEEeChHhhhhccccHHHHHHHcCCCH
Confidence 23466765432 248999999999987765422 18999999999999873 3433
Q ss_pred -hHHHHH----------------------HHhCCCCc--EEEEcccC-CChHHHHHHhccccCCCeeEeeeCCC--CcCc
Q psy6275 183 -VWEETL----------------------ILLSDNVR--FVFLSATI-PNASQFAQWVSHLHHQPCHVVYTDYR--PTPL 234 (391)
Q Consensus 183 -~~~~i~----------------------~~~~~~~~--~i~~SAT~-~~~~~~~~~l~~~~~~~~~v~~~~~~--~~~i 234 (391)
.++.++ ..++...| ++++|||. |.... ..++. +...+...... ..++
T Consensus 230 e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~-~~l~r----~ll~~~v~~~~~~~r~I 304 (1171)
T TIGR01054 230 ELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKR-AKLFR----ELLGFEVGGGSDTLRNV 304 (1171)
T ss_pred HHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccH-HHHcc----cccceEecCccccccce
Confidence 233322 22334444 66789994 43311 11121 22222211111 1234
Q ss_pred eEeeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEE
Q psy6275 235 QHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFS 314 (391)
Q Consensus 235 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~ 314 (391)
.+.++.+. .....+.+++...+ .++||||
T Consensus 305 ~~~~~~~~--------------------------------------------------~~~~~L~~ll~~l~-~~~IVFv 333 (1171)
T TIGR01054 305 VDVYVEDE--------------------------------------------------DLKETLLEIVKKLG-TGGIVYV 333 (1171)
T ss_pred EEEEEecc--------------------------------------------------cHHHHHHHHHHHcC-CCEEEEE
Confidence 44443211 00113444444443 5899999
Q ss_pred cch---hhHHHHHHHhhccCCCCh----HHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhcc
Q psy6275 315 FSK---KDCEIYAMQMAKLNFNET----EEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHH 377 (391)
Q Consensus 315 ~t~---~~~~~la~~L~~~g~~~~----~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h 377 (391)
+|+ +.|+.+++.|.+.|+++. +.++...+.|++ .+++|++|. .-+++++||||++|
T Consensus 334 ~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~~~l~~Fr~G~~~vLVata-------~~tdv~aRGIDip~ 397 (1171)
T TIGR01054 334 SIDYGKEKAEEIAEFLENHGVKAVAYHATKPKEDYEKFAEGEIDVLIGVA-------SYYGTLVRGLDLPE 397 (1171)
T ss_pred eccccHHHHHHHHHHHHhCCceEEEEeCCCCHHHHHHHHcCCCCEEEEec-------cccCcccccCCCCc
Confidence 999 999999999999888754 222456667766 778999863 12359999999998
|
Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA. |
| >KOG0329|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-28 Score=211.82 Aligned_cols=202 Identities=18% Similarity=0.203 Sum_probs=170.6
Q ss_pred CCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc---CCeEEEEcccHH
Q psy6275 36 PDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ---SQRVIYTTPIKA 111 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~---~~~vlvl~P~~~ 111 (391)
.+|..+-|+|++++.+-++||+ |..+|.++||...-|.++++.|..|.|||.+|.++.++.+.+ ...+++++.||+
T Consensus 42 sgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtre 121 (387)
T KOG0329|consen 42 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRE 121 (387)
T ss_pred cchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHH
Confidence 4788899999999999999998 999999999998889999999999999999999999998854 347899999999
Q ss_pred HHHHHHHHHHHhcc-----cceeeeCCcccCC-------CCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCcc-
Q psy6275 112 LSNQKYREFEEQFK-----DVGLITGDVTINP-------SSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDK- 178 (391)
Q Consensus 112 L~~q~~~~~~~~~~-----~v~~~~g~~~~~~-------~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~- 178 (391)
|+-|+.+++.++.+ ++.++.|+..+.. -++|+|+||++++.+..++...+++++.+|+||||.|+++
T Consensus 122 lafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~l 201 (387)
T KOG0329|consen 122 LAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQL 201 (387)
T ss_pred HHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHHH
Confidence 99999988877766 6788999888654 4789999999999999999999999999999999988643
Q ss_pred ccchhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHHhccccCCCeeEeeeCCCCc---CceEeecc
Q psy6275 179 ERGYVWEETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVYTDYRPT---PLQHYLFP 240 (391)
Q Consensus 179 ~~~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~~~~~~~~---~i~~~~~~ 240 (391)
.....++.+.+..|...|++.+|||++.. +-+.. .++.+|..++..++... .++++++.
T Consensus 202 DMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~---kFmQdPmEi~vDdE~KLtLHGLqQ~Yvk 264 (387)
T KOG0329|consen 202 DMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCH---KFMQDPMEIFVDDEAKLTLHGLQQYYVK 264 (387)
T ss_pred HHHHHHHHHhhcCcccceeeeeeeecchhhHHHHH---hhhcCchhhhccchhhhhhhhHHHHHHh
Confidence 34556777888889999999999999876 44544 55667888777765533 46666653
|
|
| >PHA02558 uvsW UvsW helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-26 Score=227.77 Aligned_cols=279 Identities=15% Similarity=0.106 Sum_probs=174.3
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcC-CeEEEEcccHHHHHHHHHHHHHhcc----cceee
Q psy6275 56 FVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQS-QRVIYTTPIKALSNQKYREFEEQFK----DVGLI 130 (391)
Q Consensus 56 ~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~-~~vlvl~P~~~L~~q~~~~~~~~~~----~v~~~ 130 (391)
+.|+++|.++++.+..+++.++++|||+|||.++...+...+..+ .++||++||++|+.|+.++++++.. .+..+
T Consensus 113 ~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i 192 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKI 192 (501)
T ss_pred CCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhccccccceeEE
Confidence 579999999999998899999999999999998755443334444 4999999999999999999998764 23344
Q ss_pred eCCcccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEcccCCChHH-
Q psy6275 131 TGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNASQ- 209 (391)
Q Consensus 131 ~g~~~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~- 209 (391)
.++.....+.+|+|+||+++.+.. ...+++++++|+||||++.+ ..+..++..++...++++||||+.+...
T Consensus 193 ~~g~~~~~~~~I~VaT~qsl~~~~---~~~~~~~~~iIvDEaH~~~~----~~~~~il~~~~~~~~~lGLTATp~~~~~~ 265 (501)
T PHA02558 193 YSGTAKDTDAPIVVSTWQSAVKQP---KEWFDQFGMVIVDECHLFTG----KSLTSIITKLDNCKFKFGLTGSLRDGKAN 265 (501)
T ss_pred ecCcccCCCCCEEEeeHHHHhhch---hhhccccCEEEEEchhcccc----hhHHHHHHhhhccceEEEEeccCCCcccc
Confidence 455454556899999999987543 23467999999999999864 3466777777767889999999975421
Q ss_pred ---HHHHhccccCCCeeEeee-----CCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhhhccCCCCC
Q psy6275 210 ---FAQWVSHLHHQPCHVVYT-----DYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKG 281 (391)
Q Consensus 210 ---~~~~l~~~~~~~~~v~~~-----~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (391)
+..+++ ...+.... .+...+++...+......... .......++..+..+.. ...++
T Consensus 266 ~~~~~~~fG----~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~----~~~~~~~~~~~~~~l~~--~~~Rn----- 330 (501)
T PHA02558 266 ILQYVGLFG----DIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDR----VKLKGEDYQEEIKYITS--HTKRN----- 330 (501)
T ss_pred HHHHHHhhC----CceEEecHHHHHhCCCcCCceEEEEeccCCHHHh----hhhcccchHHHHHHHhc--cHHHH-----
Confidence 122222 11111100 011112221111111000000 00000111111111110 00000
Q ss_pred CCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCC--------hHHHHHHHHHHHHHh-hhc
Q psy6275 282 GRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNE--------TEEVKLVDDVFSNAM-DVL 352 (391)
Q Consensus 282 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~--------~~~r~~~~~~~~~~~-~~l 352 (391)
..+..++..+.+ .+.+++|||++.++|+.+++.|.+.|.++ .++|..+.+.+++.. .++
T Consensus 331 -----------~~I~~~~~~~~~-~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vL 398 (501)
T PHA02558 331 -----------KWIANLALKLAK-KGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIII 398 (501)
T ss_pred -----------HHHHHHHHHHHh-cCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEE
Confidence 112223333333 34589999999999999999999876654 367777777777633 355
Q ss_pred chhhccCcchHhHHHHHHhhhhhccC
Q psy6275 353 SEEDRKLPQIENILPLLRRGIGIHHG 378 (391)
Q Consensus 353 ~~~d~~~~~~~~~~~~l~~GI~~~h~ 378 (391)
++|. +++++|||++..
T Consensus 399 vaT~----------~~l~eG~Dip~l 414 (501)
T PHA02558 399 VASY----------GVFSTGISIKNL 414 (501)
T ss_pred EEEc----------ceeccccccccc
Confidence 5541 599999999864
|
|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-26 Score=234.64 Aligned_cols=259 Identities=20% Similarity=0.236 Sum_probs=175.2
Q ss_pred CCCCccCCCCCcHHHHHHHHHHhcC------CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHH
Q psy6275 48 EKPAREYPFVLDPFQKEAILCIENN------QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFE 121 (391)
Q Consensus 48 ~~~~~~~~~~~~~~Q~~~i~~i~~~------~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~ 121 (391)
...+..++|+||+.|++|++.+.++ .+.+++||||||||.+|+++++..+..+.+++|++||++|+.|+++.++
T Consensus 226 ~~~~~~lpf~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~ 305 (630)
T TIGR00643 226 TKFLASLPFKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLR 305 (630)
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHH
Confidence 3456778999999999999988654 3689999999999999999999999999999999999999999999999
Q ss_pred Hhcc----cceeeeCCccc-----------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHH
Q psy6275 122 EQFK----DVGLITGDVTI-----------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEE 186 (391)
Q Consensus 122 ~~~~----~v~~~~g~~~~-----------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~ 186 (391)
++++ ++.+++|+... ..+++|+|+||+.+.. ...+.+++++|+||+|++....+ ..
T Consensus 306 ~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~fg~~qr----~~ 376 (630)
T TIGR00643 306 NLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHRFGVEQR----KK 376 (630)
T ss_pred HHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhhccHHHH----HH
Confidence 9876 56778887653 2357999999987643 23467999999999998643211 12
Q ss_pred HHHHhC--CCCcEEEEcccCCChHHHHHHhccccCCCeeEeeeCCCC---cCceEeeccCCCCCeeeeecCchhhhhchH
Q psy6275 187 TLILLS--DNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRP---TPLQHYLFPNGGDGIHLIVDDNKFKEHNYQ 261 (391)
Q Consensus 187 i~~~~~--~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~~---~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~ 261 (391)
+..... ..+++++||||+... .++..... ...+......| .++..+++... ...
T Consensus 377 l~~~~~~~~~~~~l~~SATp~pr-tl~l~~~~----~l~~~~i~~~p~~r~~i~~~~~~~~----------------~~~ 435 (630)
T TIGR00643 377 LREKGQGGFTPHVLVMSATPIPR-TLALTVYG----DLDTSIIDELPPGRKPITTVLIKHD----------------EKD 435 (630)
T ss_pred HHHhcccCCCCCEEEEeCCCCcH-HHHHHhcC----CcceeeeccCCCCCCceEEEEeCcc----------------hHH
Confidence 222222 268999999997543 22221111 11111111111 23333332110 000
Q ss_pred HHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcch--------hhHHHHHHHhhcc--C
Q psy6275 262 VAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSK--------KDCEIYAMQMAKL--N 331 (391)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~--------~~~~~la~~L~~~--g 331 (391)
..+..+.+.+ ..+.+++|||+.. ..++.+++.|.+. +
T Consensus 436 -------------------------------~~~~~i~~~l--~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~ 482 (630)
T TIGR00643 436 -------------------------------IVYEFIEEEI--AKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPK 482 (630)
T ss_pred -------------------------------HHHHHHHHHH--HhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCC
Confidence 0011222222 2356899999876 4566777777642 2
Q ss_pred C--------CChHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhccCCC
Q psy6275 332 F--------NETEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHGVK 380 (391)
Q Consensus 332 ~--------~~~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~~~ 380 (391)
+ ...++|..+++.|++ ..++|++|+ ++++|||++++++
T Consensus 483 ~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~-----------vie~GvDiP~v~~ 529 (630)
T TIGR00643 483 YNVGLLHGRMKSDEKEAVMEEFREGEVDILVATT-----------VIEVGVDVPNATV 529 (630)
T ss_pred CcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECc-----------eeecCcccCCCcE
Confidence 2 234778888888887 678888884 9999999987653
|
|
| >cd00268 DEADc DEAD-box helicases | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.9e-27 Score=206.21 Aligned_cols=184 Identities=23% Similarity=0.258 Sum_probs=153.2
Q ss_pred CcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc-----CCeEEEEcccHH
Q psy6275 38 LEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ-----SQRVIYTTPIKA 111 (391)
Q Consensus 38 ~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~-----~~~vlvl~P~~~ 111 (391)
|+.+++++.+.+.+.+.|++ |+++|.++++.+.+++++++.+|||+|||++|+++++..+.. +++++|++|+++
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~ 80 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRE 80 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHH
Confidence 46678888888888889998 999999999999999999999999999999999998887743 468999999999
Q ss_pred HHHHHHHHHHHhcc----cceeeeCCccc-------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCcccc
Q psy6275 112 LSNQKYREFEEQFK----DVGLITGDVTI-------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKER 180 (391)
Q Consensus 112 L~~q~~~~~~~~~~----~v~~~~g~~~~-------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~ 180 (391)
|+.|+...+..+.. .+..++|+... ..+.+|+|+||+.+...+.+....+++++++|+||+|.+.+.++
T Consensus 81 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~ 160 (203)
T cd00268 81 LALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGF 160 (203)
T ss_pred HHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccCh
Confidence 99999999988865 44556666553 23678999999999998887777788999999999999987778
Q ss_pred chhHHHHHHHhCCCCcEEEEcccCCChHHHHHHhccccCCCee
Q psy6275 181 GYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCH 223 (391)
Q Consensus 181 ~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~ 223 (391)
+..+..++..++...|++++|||+++. ...++..+..+++.
T Consensus 161 ~~~~~~~~~~l~~~~~~~~~SAT~~~~--~~~~~~~~~~~~~~ 201 (203)
T cd00268 161 EDQIREILKLLPKDRQTLLFSATMPKE--VRDLARKFLRNPVR 201 (203)
T ss_pred HHHHHHHHHhCCcccEEEEEeccCCHH--HHHHHHHHCCCCEE
Confidence 888888888888899999999999855 33333333444444
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. |
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-25 Score=230.96 Aligned_cols=256 Identities=16% Similarity=0.210 Sum_probs=179.4
Q ss_pred HHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc-----cceeeeC-C
Q psy6275 60 PFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK-----DVGLITG-D 133 (391)
Q Consensus 60 ~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~-----~v~~~~g-~ 133 (391)
.+-.+.+..+.++++++++|+||||||+++..++++....+++++|+.|+|+++.|++.++.+..+ .++...+ +
T Consensus 5 ~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~ 84 (819)
T TIGR01970 5 AVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGIGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGE 84 (819)
T ss_pred HHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhccCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEccc
Confidence 344566677888999999999999999999999998776678999999999999999999876554 3443322 3
Q ss_pred cccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccc-cCccccchh-HHHHHHHhCCCCcEEEEcccCCChHHHH
Q psy6275 134 VTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHY-MRDKERGYV-WEETLILLSDNVRFVFLSATIPNASQFA 211 (391)
Q Consensus 134 ~~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~-~~~~~~~~~-~~~i~~~~~~~~~~i~~SAT~~~~~~~~ 211 (391)
.....+++|+|+|++++++++... ..++++++|||||+|+ +++.+++.. +..+...++.+.|+++||||++.. .+.
T Consensus 85 ~~~s~~t~I~v~T~G~Llr~l~~d-~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~~~-~l~ 162 (819)
T TIGR01970 85 NKVSRRTRLEVVTEGILTRMIQDD-PELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLDGE-RLS 162 (819)
T ss_pred cccCCCCcEEEECCcHHHHHHhhC-cccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCCCHH-HHH
Confidence 334456899999999999988764 4688999999999995 555444432 234555567889999999999654 366
Q ss_pred HHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCC
Q psy6275 212 QWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGV 291 (391)
Q Consensus 212 ~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (391)
++++ + ..++...++..++++++......+ .+...
T Consensus 163 ~~l~----~-~~vI~~~gr~~pVe~~y~~~~~~~-------------~~~~~---------------------------- 196 (819)
T TIGR01970 163 SLLP----D-APVVESEGRSFPVEIRYLPLRGDQ-------------RLEDA---------------------------- 196 (819)
T ss_pred HHcC----C-CcEEEecCcceeeeeEEeecchhh-------------hHHHH----------------------------
Confidence 6553 2 234455667777887765432110 00000
Q ss_pred cccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhcc---CCC--------ChHHHHHHHHHHHH-HhhhcchhhccC
Q psy6275 292 QTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKL---NFN--------ETEEVKLVDDVFSN-AMDVLSEEDRKL 359 (391)
Q Consensus 292 ~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~---g~~--------~~~~r~~~~~~~~~-~~~~l~~~d~~~ 359 (391)
....+...+... .+++|||++++.+++.+++.|.+. ++. ..+++..+.+.|.+ ..+++++|
T Consensus 197 --v~~~l~~~l~~~-~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVAT---- 269 (819)
T TIGR01970 197 --VSRAVEHALASE-TGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLAT---- 269 (819)
T ss_pred --HHHHHHHHHHhc-CCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEec----
Confidence 011233333333 458999999999999999999862 222 23566666666655 45666666
Q ss_pred cchHhHHHHHHhhhhhcc
Q psy6275 360 PQIENILPLLRRGIGIHH 377 (391)
Q Consensus 360 ~~~~~~~~~l~~GI~~~h 377 (391)
++.++||+|..
T Consensus 270 -------nIAErgItIp~ 280 (819)
T TIGR01970 270 -------NIAETSLTIEG 280 (819)
T ss_pred -------chHhhcccccC
Confidence 59999999964
|
This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >PHA02653 RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-25 Score=226.33 Aligned_cols=255 Identities=16% Similarity=0.196 Sum_probs=163.3
Q ss_pred HHHHHHHHHHhcCCcEEEEecCCcchHHHH---------HHHHHHHH---h---cCCeEEEEcccHHHHHHHHHHHHHhc
Q psy6275 60 PFQKEAILCIENNQSVLVSAHTSAGKTVVA---------EYAIASSL---K---QSQRVIYTTPIKALSNQKYREFEEQF 124 (391)
Q Consensus 60 ~~Q~~~i~~i~~~~~~li~apTGsGKT~~~---------~~~~~~~l---~---~~~~vlvl~P~~~L~~q~~~~~~~~~ 124 (391)
.+|.++++.+.+++++++.|+||||||.+. +++.+..+ . ...+++|++|+++|+.|+...+.+..
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~v 246 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSL 246 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHh
Confidence 689999999999999999999999999973 23333333 2 34689999999999999999988755
Q ss_pred c-------cceeeeCCcccC------CCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHh
Q psy6275 125 K-------DVGLITGDVTIN------PSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILL 191 (391)
Q Consensus 125 ~-------~v~~~~g~~~~~------~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~ 191 (391)
+ .+.+..|+.... ...+|+++|++.. ...+.+++++|+||||++... +..+..++...
T Consensus 247 g~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L~-------l~~L~~v~~VVIDEaHEr~~~--~DllL~llk~~ 317 (675)
T PHA02653 247 GFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKLT-------LNKLFDYGTVIIDEVHEHDQI--GDIIIAVARKH 317 (675)
T ss_pred CccccCCceEEEEECCcchHHhhcccCCCCEEEEeCccc-------ccccccCCEEEccccccCccc--hhHHHHHHHHh
Confidence 4 345667766421 2357999997531 124779999999999998765 33444444433
Q ss_pred -CCCCcEEEEcccCCCh-HHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhh
Q psy6275 192 -SDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLAN 269 (391)
Q Consensus 192 -~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 269 (391)
+..+|+++||||++.. +.+.++++ ++..+........+++++++........ ...+..
T Consensus 318 ~~~~rq~ILmSATl~~dv~~l~~~~~----~p~~I~I~grt~~pV~~~yi~~~~~~~~----~~~y~~------------ 377 (675)
T PHA02653 318 IDKIRSLFLMTATLEDDRDRIKEFFP----NPAFVHIPGGTLFPISEVYVKNKYNPKN----KRAYIE------------ 377 (675)
T ss_pred hhhcCEEEEEccCCcHhHHHHHHHhc----CCcEEEeCCCcCCCeEEEEeecCccccc----chhhhH------------
Confidence 3446999999999754 55655543 4544444322246788877643210000 000000
Q ss_pred hhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHH---HcCCCcEEEEEcchhhHHHHHHHhhcc--CCCCh------HHH
Q psy6275 270 AGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIM---ERNLAPVIVFSFSKKDCEIYAMQMAKL--NFNET------EEV 338 (391)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~---~~~~~~~iIF~~t~~~~~~la~~L~~~--g~~~~------~~r 338 (391)
.....+.+.+. ...++++||||+++.+|+.+++.|.+. ++.+. ..+
T Consensus 378 -----------------------~~k~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~ 434 (675)
T PHA02653 378 -----------------------EEKKNIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI 434 (675)
T ss_pred -----------------------HHHHHHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH
Confidence 00011222222 223458999999999999999999865 33321 122
Q ss_pred HHHHHHH-HH-HhhhcchhhccCcchHhHHHHHHhhhhhcc
Q psy6275 339 KLVDDVF-SN-AMDVLSEEDRKLPQIENILPLLRRGIGIHH 377 (391)
Q Consensus 339 ~~~~~~~-~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h 377 (391)
+...+.+ ++ ..+++++| ++++|||||+.
T Consensus 435 eq~l~~ff~~gk~kILVAT-----------dIAERGIDIp~ 464 (675)
T PHA02653 435 DEILEKVYSSKNPSIIIST-----------PYLESSVTIRN 464 (675)
T ss_pred HHHHHHHhccCceeEEecc-----------ChhhccccccC
Confidence 2322333 33 45666666 59999999974
|
|
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-25 Score=231.72 Aligned_cols=256 Identities=17% Similarity=0.219 Sum_probs=175.7
Q ss_pred HHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc-----cceeeeCCc
Q psy6275 60 PFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK-----DVGLITGDV 134 (391)
Q Consensus 60 ~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~-----~v~~~~g~~ 134 (391)
.+-.+.+..+.+++++++.||||||||+++..++++....+++++|++|+|+++.|++..+.+..+ .++...++.
T Consensus 8 ~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~ 87 (812)
T PRK11664 8 AVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAE 87 (812)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCcCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCc
Confidence 444566677888999999999999999999999987655567999999999999999999876543 445544433
Q ss_pred -ccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEeccccc-Cccccc-hhHHHHHHHhCCCCcEEEEcccCCChHHHH
Q psy6275 135 -TINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYM-RDKERG-YVWEETLILLSDNVRFVFLSATIPNASQFA 211 (391)
Q Consensus 135 -~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~-~~~~~~-~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~ 211 (391)
....+++|+|+||+++++++.... .+.++++||+||+|+. .+.+.. ..+..++..++.+.|+++||||++.. .+.
T Consensus 88 ~~~~~~t~I~v~T~G~Llr~l~~d~-~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl~~~-~l~ 165 (812)
T PRK11664 88 SKVGPNTRLEVVTEGILTRMIQRDP-ELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDND-RLQ 165 (812)
T ss_pred cccCCCCcEEEEChhHHHHHHhhCC-CcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecCCCHH-HHH
Confidence 345567899999999999887644 6889999999999973 332211 12233455567789999999999654 466
Q ss_pred HHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCC
Q psy6275 212 QWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGV 291 (391)
Q Consensus 212 ~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (391)
+++. ++ .++...++..++++++...+... + +..
T Consensus 166 ~~~~----~~-~~I~~~gr~~pV~~~y~~~~~~~---------~----~~~----------------------------- 198 (812)
T PRK11664 166 QLLP----DA-PVIVSEGRSFPVERRYQPLPAHQ---------R----FDE----------------------------- 198 (812)
T ss_pred HhcC----CC-CEEEecCccccceEEeccCchhh---------h----HHH-----------------------------
Confidence 6543 22 23445567778887776443210 0 000
Q ss_pred cccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhc---cCCC--------ChHHHHHHHHHHHH-HhhhcchhhccC
Q psy6275 292 QTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAK---LNFN--------ETEEVKLVDDVFSN-AMDVLSEEDRKL 359 (391)
Q Consensus 292 ~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~---~g~~--------~~~~r~~~~~~~~~-~~~~l~~~d~~~ 359 (391)
.....+...+.. ..+.+|||++++.+++.+++.|.+ .++. ..++++.....+.+ ..+++++|
T Consensus 199 -~v~~~l~~~l~~-~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvAT---- 272 (812)
T PRK11664 199 -AVARATAELLRQ-ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLAT---- 272 (812)
T ss_pred -HHHHHHHHHHHh-CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEec----
Confidence 001123333333 346899999999999999999986 2222 22455555544444 44556655
Q ss_pred cchHhHHHHHHhhhhhcc
Q psy6275 360 PQIENILPLLRRGIGIHH 377 (391)
Q Consensus 360 ~~~~~~~~~l~~GI~~~h 377 (391)
+++++||+|..
T Consensus 273 -------nIAErsLtIp~ 283 (812)
T PRK11664 273 -------NIAETSLTIEG 283 (812)
T ss_pred -------chHHhcccccC
Confidence 59999999974
|
|
| >TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.9e-25 Score=210.03 Aligned_cols=144 Identities=20% Similarity=0.241 Sum_probs=104.4
Q ss_pred HHHHHHHHHhcCCc--EEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc--------cceee
Q psy6275 61 FQKEAILCIENNQS--VLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK--------DVGLI 130 (391)
Q Consensus 61 ~Q~~~i~~i~~~~~--~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~--------~v~~~ 130 (391)
+|.++++.+.++++ ++++||||||||.+++++++. ...+++|++|+++|++|+++++..++. .+..+
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~---~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~ 77 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLH---GENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHV 77 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHH---cCCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEe
Confidence 59999999987764 789999999999999998875 356899999999999999999998873 23334
Q ss_pred eCCccc---------------------------CCCCCEEEEcHHHHHHHHhcC---c-----cccCccceEEEeccccc
Q psy6275 131 TGDVTI---------------------------NPSSSCLIMTTEILRNMLYRG---S-----EITREVGWVIFDEIHYM 175 (391)
Q Consensus 131 ~g~~~~---------------------------~~~~~I~v~Tp~~l~~~l~~~---~-----~~l~~~~~lViDE~h~~ 175 (391)
+|+... ...+.|+++||+.+..++... . .++.+++++|+||+|.+
T Consensus 78 ~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H~~ 157 (357)
T TIGR03158 78 SKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFHLY 157 (357)
T ss_pred cCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEeccccc
Confidence 554111 124678888999987655431 1 13578999999999998
Q ss_pred Cccccchh-----HHHHHHHhCCCCcEEEEcccCCCh
Q psy6275 176 RDKERGYV-----WEETLILLSDNVRFVFLSATIPNA 207 (391)
Q Consensus 176 ~~~~~~~~-----~~~i~~~~~~~~~~i~~SAT~~~~ 207 (391)
..+..... ...++.......++++||||++..
T Consensus 158 ~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~ 194 (357)
T TIGR03158 158 DAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPA 194 (357)
T ss_pred CcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHH
Confidence 64332211 122223333457999999999765
|
subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system. |
| >COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-25 Score=229.97 Aligned_cols=277 Identities=21% Similarity=0.263 Sum_probs=196.9
Q ss_pred CCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcC--CeEEEEcccHHHHHHHHHHHHHhc
Q psy6275 48 EKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQS--QRVIYTTPIKALSNQKYREFEEQF 124 (391)
Q Consensus 48 ~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~--~~vlvl~P~~~L~~q~~~~~~~~~ 124 (391)
...+.+.|.. |+++|.+|+..+.+|+|++|+.|||||||.+|++|+++.+-++ .++|++.||++|++++.++++++.
T Consensus 60 ~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~ 139 (851)
T COG1205 60 KSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRELI 139 (851)
T ss_pred HHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHH
Confidence 3444555555 9999999999999999999999999999999999999988654 467999999999999999999987
Q ss_pred c------cceeeeCCccc-------CCCCCEEEEcHHHHHHHHhcCc----cccCccceEEEecccccCccccchhHHHH
Q psy6275 125 K------DVGLITGDVTI-------NPSSSCLIMTTEILRNMLYRGS----EITREVGWVIFDEIHYMRDKERGYVWEET 187 (391)
Q Consensus 125 ~------~v~~~~g~~~~-------~~~~~I~v~Tp~~l~~~l~~~~----~~l~~~~~lViDE~h~~~~~~~~~~~~~i 187 (391)
. .++.++|+... ...++|+++||+++..++.... ..++++++||+||+|..-. .+|..+..+
T Consensus 140 ~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrG-v~GS~vA~l 218 (851)
T COG1205 140 SDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRG-VQGSEVALL 218 (851)
T ss_pred HhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccc-cchhHHHHH
Confidence 6 34568888764 3468999999999987554332 3456899999999998643 466666655
Q ss_pred HHHh-------CCCCcEEEEcccCCChHHHHHHhccccCCCeeE-eeeCCCCcCceEeeccCCCCCeeeeecCchhhhhc
Q psy6275 188 LILL-------SDNVRFVFLSATIPNASQFAQWVSHLHHQPCHV-VYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHN 259 (391)
Q Consensus 188 ~~~~-------~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v-~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~ 259 (391)
++++ +.+.|+|+.|||+.++.+++.-+. +..... +..++.+....+++...+..... ...
T Consensus 219 lRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~---~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~---------~~~ 286 (851)
T COG1205 219 LRRLLRRLRRYGSPLQIICTSATLANPGEFAEELF---GRDFEVPVDEDGSPRGLRYFVRREPPIREL---------AES 286 (851)
T ss_pred HHHHHHHHhccCCCceEEEEeccccChHHHHHHhc---CCcceeeccCCCCCCCceEEEEeCCcchhh---------hhh
Confidence 5543 357999999999999866666433 334444 55666666666666654421000 000
Q ss_pred hHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHH----HHhhccC----
Q psy6275 260 YQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYA----MQMAKLN---- 331 (391)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la----~~L~~~g---- 331 (391)
...+.......+...+..++ .++|+|+.+++.++.+. +.+...+
T Consensus 287 ---------------------------~r~s~~~~~~~~~~~~~~~~-~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~ 338 (851)
T COG1205 287 ---------------------------IRRSALAELATLAALLVRNG-IQTLVFFRSRKQVELLYLSPRRRLVREGGKLL 338 (851)
T ss_pred ---------------------------cccchHHHHHHHHHHHHHcC-ceEEEEEehhhhhhhhhhchhHHHhhcchhhh
Confidence 00000122345555555555 59999999999999997 4444444
Q ss_pred --------CCChHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhc
Q psy6275 332 --------FNETEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIH 376 (391)
Q Consensus 332 --------~~~~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~ 376 (391)
....++|..+...++. .+..++.| .++.-||||-
T Consensus 339 ~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st-----------~AlelgidiG 381 (851)
T COG1205 339 DAVSTYRAGLHREERRRIEAEFKEGELLGVIAT-----------NALELGIDIG 381 (851)
T ss_pred hheeeccccCCHHHHHHHHHHHhcCCccEEecc-----------hhhhhceeeh
Confidence 1223667777777776 55665655 6999999983
|
|
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-25 Score=214.62 Aligned_cols=139 Identities=24% Similarity=0.363 Sum_probs=102.5
Q ss_pred cEEEEecCCcchHHHHHHHHHHHHh--cCCeEEEEcccHHHHHHHHHHHHHhcc-cceeeeCCccc--------------
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASSLK--QSQRVIYTTPIKALSNQKYREFEEQFK-DVGLITGDVTI-------------- 136 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~l~--~~~~vlvl~P~~~L~~q~~~~~~~~~~-~v~~~~g~~~~-------------- 136 (391)
++++.||||||||.+++.+++..+. .+.+++|++|+++|+.|+++++...++ .++.++|....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKRIKEMGDSEEFEH 80 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHHHhccCCchhHHH
Confidence 4799999999999999999988773 357999999999999999999999865 56655554321
Q ss_pred -------C----CCCCEEEEcHHHHHHHHhcCcc----cc--CccceEEEecccccCccccchhHHHHHHHh-CCCCcEE
Q psy6275 137 -------N----PSSSCLIMTTEILRNMLYRGSE----IT--REVGWVIFDEIHYMRDKERGYVWEETLILL-SDNVRFV 198 (391)
Q Consensus 137 -------~----~~~~I~v~Tp~~l~~~l~~~~~----~l--~~~~~lViDE~h~~~~~~~~~~~~~i~~~~-~~~~~~i 198 (391)
+ ...+|+|+||+++...+..... .+ -..+++|+||+|.+.+.+++. +..++..+ ..+.|++
T Consensus 81 ~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l~~~~~~~i 159 (358)
T TIGR01587 81 LFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVLKDNDVPIL 159 (358)
T ss_pred HHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHHHHcCCCEE
Confidence 0 1357999999998877654211 11 123799999999998765554 44444444 3578999
Q ss_pred EEcccCCChHHHHHHhc
Q psy6275 199 FLSATIPNASQFAQWVS 215 (391)
Q Consensus 199 ~~SAT~~~~~~~~~~l~ 215 (391)
+||||+++. +.+++.
T Consensus 160 ~~SATlp~~--l~~~~~ 174 (358)
T TIGR01587 160 LMSATLPKF--LKEYAE 174 (358)
T ss_pred EEecCchHH--HHHHHh
Confidence 999999743 445443
|
This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model. |
| >COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-25 Score=218.39 Aligned_cols=263 Identities=16% Similarity=0.181 Sum_probs=187.1
Q ss_pred cCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeee
Q psy6275 53 EYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLIT 131 (391)
Q Consensus 53 ~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~ 131 (391)
-+||. +++-|.++|..+.+++++++..|||+|||+||.+|.+-. .+-+||+.|..+|..++.+.++..+..+..+.
T Consensus 12 ~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~---~G~TLVVSPLiSLM~DQV~~l~~~Gi~A~~ln 88 (590)
T COG0514 12 VFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL---EGLTLVVSPLISLMKDQVDQLEAAGIRAAYLN 88 (590)
T ss_pred HhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc---CCCEEEECchHHHHHHHHHHHHHcCceeehhh
Confidence 35787 999999999999999999999999999999999998665 67899999999999999999999886665555
Q ss_pred CCccc-----------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccc--cchhHHHHHHHhC--CCCc
Q psy6275 132 GDVTI-----------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKE--RGYVWEETLILLS--DNVR 196 (391)
Q Consensus 132 g~~~~-----------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~--~~~~~~~i~~~~~--~~~~ 196 (391)
+.... ..+.++++.+||++..-.......-..+.+++|||||++++|+ |.+.+..+-.... ++.+
T Consensus 89 S~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~~~p 168 (590)
T COG0514 89 STLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGLPNPP 168 (590)
T ss_pred cccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHhhCCCCC
Confidence 54332 2246899999998774322221224478999999999999996 7777776554432 2789
Q ss_pred EEEEcccCCCh--HHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhhh
Q psy6275 197 FVFLSATIPNA--SQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAA 274 (391)
Q Consensus 197 ~i~~SAT~~~~--~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 274 (391)
++++|||.++. .++.+.|. .+...++.......++...+....
T Consensus 169 ~~AlTATA~~~v~~DI~~~L~---l~~~~~~~~sfdRpNi~~~v~~~~-------------------------------- 213 (590)
T COG0514 169 VLALTATATPRVRDDIREQLG---LQDANIFRGSFDRPNLALKVVEKG-------------------------------- 213 (590)
T ss_pred EEEEeCCCChHHHHHHHHHhc---CCCcceEEecCCCchhhhhhhhcc--------------------------------
Confidence 99999998765 66666554 233233333222222222222100
Q ss_pred ccCCCCCCCCCCCCCCCcccHHHHHHHH---HHcCCCcEEEEEcchhhHHHHHHHhhccCCCCh--------HHHHHHHH
Q psy6275 275 KAGDHKGGRKGGPKGGVQTNCFKIVKMI---MERNLAPVIVFSFSKKDCEIYAMQMAKLNFNET--------EEVKLVDD 343 (391)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l---~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~~--------~~r~~~~~ 343 (391)
+...++. .+ ..+..++.||||.||+.|+.+|+.|...|+.+. ++|..+.+
T Consensus 214 ------------------~~~~q~~-fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~ 274 (590)
T COG0514 214 ------------------EPSDQLA-FLATVLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQ 274 (590)
T ss_pred ------------------cHHHHHH-HHHhhccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHH
Confidence 0011111 22 245566899999999999999999999877764 78888888
Q ss_pred HHHH-HhhhcchhhccCcchHhHHHHHHhhhhhc------cCCCCcc
Q psy6275 344 VFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIH------HGVKPYG 383 (391)
Q Consensus 344 ~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~------h~~~~~~ 383 (391)
.|.. .+.++++|- ++.-|||-+ |-+||..
T Consensus 275 ~f~~~~~~iiVAT~-----------AFGMGIdKpdVRfViH~~lP~s 310 (590)
T COG0514 275 AFLNDEIKVMVATN-----------AFGMGIDKPDVRFVIHYDLPGS 310 (590)
T ss_pred HHhcCCCcEEEEec-----------cccCccCCCCceEEEEecCCCC
Confidence 8887 778888773 444455544 6677754
|
|
| >PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-24 Score=185.91 Aligned_cols=147 Identities=29% Similarity=0.474 Sum_probs=125.4
Q ss_pred cHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCC--eEEEEcccHHHHHHHHHHHHHhcc----cceeeeC
Q psy6275 59 DPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQ--RVIYTTPIKALSNQKYREFEEQFK----DVGLITG 132 (391)
Q Consensus 59 ~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~--~vlvl~P~~~L~~q~~~~~~~~~~----~v~~~~g 132 (391)
||+|.++++.+.+++++++.||||+|||++++.+++..+.++. ++++++|+++|++|+.+.+...+. .+..++|
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~ 80 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHG 80 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEEST
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccccccccccccc
Confidence 6899999999999999999999999999999999998886644 999999999999999999999987 3555677
Q ss_pred CcccC--------CCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhC--CCCcEEEEcc
Q psy6275 133 DVTIN--------PSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLS--DNVRFVFLSA 202 (391)
Q Consensus 133 ~~~~~--------~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~--~~~~~i~~SA 202 (391)
+.... .+++|+|+||+++...+......+.+++++|+||+|.+.++.++..+..++..+. .+.+++++||
T Consensus 81 ~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i~~SA 160 (169)
T PF00270_consen 81 GQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQIILLSA 160 (169)
T ss_dssp TSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEEEEEES
T ss_pred cccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCcEEEEee
Confidence 65422 3689999999999999887544666799999999999987666777777877763 3689999999
Q ss_pred cCC
Q psy6275 203 TIP 205 (391)
Q Consensus 203 T~~ 205 (391)
|++
T Consensus 161 T~~ 163 (169)
T PF00270_consen 161 TLP 163 (169)
T ss_dssp SST
T ss_pred CCC
Confidence 997
|
Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A .... |
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-22 Score=196.75 Aligned_cols=296 Identities=19% Similarity=0.194 Sum_probs=180.1
Q ss_pred ccCCCCCcHHHHHHHHHHhc----CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc--
Q psy6275 52 REYPFVLDPFQKEAILCIEN----NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK-- 125 (391)
Q Consensus 52 ~~~~~~~~~~Q~~~i~~i~~----~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~-- 125 (391)
....++++++|++|+..+.+ ++..++++|||+|||.+++..+... ..++||++|+++|+.|+.+.+...+.
T Consensus 31 ~~~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~---~~~~Lvlv~~~~L~~Qw~~~~~~~~~~~ 107 (442)
T COG1061 31 VAFEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL---KRSTLVLVPTKELLDQWAEALKKFLLLN 107 (442)
T ss_pred cccCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh---cCCEEEEECcHHHHHHHHHHHHHhcCCc
Confidence 44456799999999999877 8899999999999999988777665 34499999999999999988887776
Q ss_pred -cceeeeCCcccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEcccC
Q psy6275 126 -DVGLITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATI 204 (391)
Q Consensus 126 -~v~~~~g~~~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 204 (391)
.++.+.|+........|+|+|.+.+...........+.+++||+||||++.+. ....+...+.....+++||||+
T Consensus 108 ~~~g~~~~~~~~~~~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~----~~~~~~~~~~~~~~~LGLTATp 183 (442)
T COG1061 108 DEIGIYGGGEKELEPAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAP----SYRRILELLSAAYPRLGLTATP 183 (442)
T ss_pred cccceecCceeccCCCcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcH----HHHHHHHhhhcccceeeeccCc
Confidence 35666665443222579999999987642111222337999999999998654 3334444444323399999998
Q ss_pred CChH-HHHHHhccccCCCeeEee-----eCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHh-----hhhhhh
Q psy6275 205 PNAS-QFAQWVSHLHHQPCHVVY-----TDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVL-----ANAGDA 273 (391)
Q Consensus 205 ~~~~-~~~~~l~~~~~~~~~v~~-----~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----~~~~~~ 273 (391)
+... .....+....+...+-.. ..+-..+...+.+.+....... ..+....... ...+ ......
T Consensus 184 ~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~ 258 (442)
T COG1061 184 EREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEE----REYAKESARF-RELLRARGTLRAENE 258 (442)
T ss_pred eeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHH----HHhhhhhhhh-hhhhhhhhhhhHHHH
Confidence 7543 122221111111111111 1122334444333322110000 0000000000 0000 000000
Q ss_pred hccCCCCCCCCCCCCCCCcccHHHHHHHHHHc-CCCcEEEEEcchhhHHHHHHHhhccCC-------CChHHHHHHHHHH
Q psy6275 274 AKAGDHKGGRKGGPKGGVQTNCFKIVKMIMER-NLAPVIVFSFSKKDCEIYAMQMAKLNF-------NETEEVKLVDDVF 345 (391)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~iIF~~t~~~~~~la~~L~~~g~-------~~~~~r~~~~~~~ 345 (391)
.... ......+...+...+... .+.+++|||.+..+++.++..|...|. ....+|..+.+.|
T Consensus 259 ~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~~~~it~~t~~~eR~~il~~f 328 (442)
T COG1061 259 ARRI----------AIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGIVEAITGETPKEEREAILERF 328 (442)
T ss_pred HHHH----------hhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHHH
Confidence 0000 000012333444444444 467999999999999999999987744 3448899999999
Q ss_pred HH-HhhhcchhhccCcchHhHHHHHHhhhhhccCCC
Q psy6275 346 SN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHGVK 380 (391)
Q Consensus 346 ~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~~~ 380 (391)
+. .++.|+.. .++..|||+++++.
T Consensus 329 r~g~~~~lv~~-----------~vl~EGvDiP~~~~ 353 (442)
T COG1061 329 RTGGIKVLVTV-----------KVLDEGVDIPDADV 353 (442)
T ss_pred HcCCCCEEEEe-----------eeccceecCCCCcE
Confidence 88 66776666 48999999998775
|
|
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.3e-22 Score=209.91 Aligned_cols=161 Identities=21% Similarity=0.227 Sum_probs=122.1
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh-cCCeEEEEcccHHHHHHHHHHHHHhcc----cce
Q psy6275 54 YPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK-QSQRVIYTTPIKALSNQKYREFEEQFK----DVG 128 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~-~~~~vlvl~P~~~L~~q~~~~~~~~~~----~v~ 128 (391)
..+++++||.+++..+..+ |+++++|||+|||.++++++...+. .++++||++|+++|+.|+...+++.++ .+.
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~ 90 (773)
T PRK13766 12 NTIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIV 90 (773)
T ss_pred CcCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEE
Confidence 4567999999999887766 8999999999999999888877663 468999999999999999999998865 556
Q ss_pred eeeCCccc------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEcc
Q psy6275 129 LITGDVTI------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSA 202 (391)
Q Consensus 129 ~~~g~~~~------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 202 (391)
.++|+... ..+.+|+|+||+.+...+......+.+++++|+||||++........+...........++++|||
T Consensus 91 ~~~g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~~il~lTa 170 (773)
T PRK13766 91 VFTGEVSPEKRAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNPLVLGLTA 170 (773)
T ss_pred EEeCCCCHHHHHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCCEEEEEEc
Confidence 67776553 236789999999998877666677889999999999998643211122222222234577999999
Q ss_pred cCCCh-HHHHHHhc
Q psy6275 203 TIPNA-SQFAQWVS 215 (391)
Q Consensus 203 T~~~~-~~~~~~l~ 215 (391)
|+... ..+...+.
T Consensus 171 TP~~~~~~i~~~~~ 184 (773)
T PRK13766 171 SPGSDEEKIKEVCE 184 (773)
T ss_pred CCCCCHHHHHHHHH
Confidence 98654 44444443
|
|
| >KOG0349|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=3e-24 Score=196.79 Aligned_cols=244 Identities=17% Similarity=0.190 Sum_probs=155.3
Q ss_pred CeEEEEcccHHHHHHHHHHHHHhcc-----cce--eeeCCccc-------CCCCCEEEEcHHHHHHHHhcCccccCccce
Q psy6275 101 QRVIYTTPIKALSNQKYREFEEQFK-----DVG--LITGDVTI-------NPSSSCLIMTTEILRNMLYRGSEITREVGW 166 (391)
Q Consensus 101 ~~vlvl~P~~~L~~q~~~~~~~~~~-----~v~--~~~g~~~~-------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~ 166 (391)
+..+|+-|+++|++|+...+.++.. .+. ++.|+... ....+|+|+||+++.+.+..+...+...++
T Consensus 287 p~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~crF 366 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCRF 366 (725)
T ss_pred cceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeEE
Confidence 4799999999999999996555433 121 33443332 335799999999999999999888999999
Q ss_pred EEEecccccCccccchhHHHHHHHhC------CCCcEEEEcccCCCh--HHHHHHhccccCCCeeEeeeCCC--CcCceE
Q psy6275 167 VIFDEIHYMRDKERGYVWEETLILLS------DNVRFVFLSATIPNA--SQFAQWVSHLHHQPCHVVYTDYR--PTPLQH 236 (391)
Q Consensus 167 lViDE~h~~~~~~~~~~~~~i~~~~~------~~~~~i~~SAT~~~~--~~~~~~l~~~~~~~~~v~~~~~~--~~~i~~ 236 (391)
+|+||++.++..++...+..+...++ ...|.+.+|||+..- +.+++. .+.-|..+-..... |..+.+
T Consensus 367 lvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~er---vmhfptwVdLkgeD~vpetvHh 443 (725)
T KOG0349|consen 367 LVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGER---VMHFPTWVDLKGEDLVPETVHH 443 (725)
T ss_pred EEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhh---hccCceeEecccccccchhhcc
Confidence 99999999998888877777776664 468999999998643 445553 34455666544433 334555
Q ss_pred eeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHH---------HHHHHHcCC
Q psy6275 237 YLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKI---------VKMIMERNL 307 (391)
Q Consensus 237 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---------~~~l~~~~~ 307 (391)
++..+... ++ ..+...-..+.- +.....+....+..+ ++..... +..++++..
T Consensus 444 vv~lv~p~-----~d------~sw~~lr~~i~t-d~vh~kdn~~pg~~S------pe~~s~a~kilkgEy~v~ai~~h~m 505 (725)
T KOG0349|consen 444 VVKLVCPS-----VD------GSWCDLRQFIET-DKVHTKDNLLPGQVS------PENPSSATKILKGEYGVVAIRRHAM 505 (725)
T ss_pred ceeecCCc-----cC------ccHHHHhhhhcc-CCcccccccccccCC------CCChhhhhHHhcCchhhhhhhhhcc
Confidence 55443321 00 011111000000 000000000000000 1111111 222345567
Q ss_pred CcEEEEEcchhhHHHHHHHhhccCCC-----------ChHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhh
Q psy6275 308 APVIVFSFSKKDCEIYAMQMAKLNFN-----------ETEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGI 375 (391)
Q Consensus 308 ~~~iIF~~t~~~~~~la~~L~~~g~~-----------~~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~ 375 (391)
.++||||.|+.+|+.|-+.|+..|-. ..++|.+..+.|++ .++.|++|| +.+||+||
T Consensus 506 dkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictd-----------vaargldi 574 (725)
T KOG0349|consen 506 DKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTD-----------VAARGLDI 574 (725)
T ss_pred CceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEeh-----------hhhccccc
Confidence 89999999999999999999987542 13677777777777 677777775 99999999
Q ss_pred c
Q psy6275 376 H 376 (391)
Q Consensus 376 ~ 376 (391)
|
T Consensus 575 ~ 575 (725)
T KOG0349|consen 575 T 575 (725)
T ss_pred c
Confidence 8
|
|
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.8e-22 Score=187.37 Aligned_cols=169 Identities=21% Similarity=0.211 Sum_probs=131.7
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc-CCeEEEEcccHHHHHHHHHHHHHhcc----ccee
Q psy6275 55 PFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ-SQRVIYTTPIKALSNQKYREFEEQFK----DVGL 129 (391)
Q Consensus 55 ~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~-~~~vlvl~P~~~L~~q~~~~~~~~~~----~v~~ 129 (391)
.++++.||.......+.+ |.+++.|||-|||+++++-+...+.. ++++|+++||+.|+.|.+..+.+.++ .+..
T Consensus 13 ~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ 91 (542)
T COG1111 13 TIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAA 91 (542)
T ss_pred cccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHHHHhCCChhheee
Confidence 346899999988776655 89999999999999998888877654 45799999999999999999999987 6778
Q ss_pred eeCCcccC------CCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHH---HhCCCCcEEEE
Q psy6275 130 ITGDVTIN------PSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLI---LLSDNVRFVFL 200 (391)
Q Consensus 130 ~~g~~~~~------~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~---~~~~~~~~i~~ 200 (391)
++|..... .+.+|+|+||+.+.+-+..+..++.++.++|+||||+.... - .+-.+.. ....++.+++|
T Consensus 92 ltGev~p~~R~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGn--y-AYv~Va~~y~~~~k~~~ilgL 168 (542)
T COG1111 92 LTGEVRPEEREELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGN--Y-AYVFVAKEYLRSAKNPLILGL 168 (542)
T ss_pred ecCCCChHHHHHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCc--c-hHHHHHHHHHHhccCceEEEE
Confidence 99988764 36799999999999999999999999999999999986432 1 2222222 23456789999
Q ss_pred cccCCCh-HHHHHHhccccCCCeeEeee
Q psy6275 201 SATIPNA-SQFAQWVSHLHHQPCHVVYT 227 (391)
Q Consensus 201 SAT~~~~-~~~~~~l~~~~~~~~~v~~~ 227 (391)
|||+.+. +.+.+-+..+.-+.+.+...
T Consensus 169 TASPGs~~ekI~eV~~nLgIe~vevrTE 196 (542)
T COG1111 169 TASPGSDLEKIQEVVENLGIEKVEVRTE 196 (542)
T ss_pred ecCCCCCHHHHHHHHHhCCcceEEEecC
Confidence 9999876 55555544444444444443
|
|
| >TIGR00603 rad25 DNA repair helicase rad25 | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.9e-22 Score=200.06 Aligned_cols=280 Identities=14% Similarity=0.108 Sum_probs=175.8
Q ss_pred CCCCcHHHHHHHHHHhc-C--CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc----cc
Q psy6275 55 PFVLDPFQKEAILCIEN-N--QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK----DV 127 (391)
Q Consensus 55 ~~~~~~~Q~~~i~~i~~-~--~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~----~v 127 (391)
.+.++|||.+++..+.. + ++.++++|||+|||++.+..+... ..++||+||+..|+.||.+++.+++. .+
T Consensus 253 ~~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l---~k~tLILvps~~Lv~QW~~ef~~~~~l~~~~I 329 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV---KKSCLVLCTSAVSVEQWKQQFKMWSTIDDSQI 329 (732)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh---CCCEEEEeCcHHHHHHHHHHHHHhcCCCCceE
Confidence 45799999999998763 3 478999999999999987766554 57899999999999999999999864 55
Q ss_pred eeeeCCcccC--CCCCEEEEcHHHHHHHHhcCc------ccc--CccceEEEecccccCccccchhHHHHHHHhCCCCcE
Q psy6275 128 GLITGDVTIN--PSSSCLIMTTEILRNMLYRGS------EIT--REVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRF 197 (391)
Q Consensus 128 ~~~~g~~~~~--~~~~I~v~Tp~~l~~~l~~~~------~~l--~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~ 197 (391)
+.++|+.... ....|+|+|++.+.....+.. ..+ ..++++|+||||++.. ..+..++..+. ....
T Consensus 330 ~~~tg~~k~~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA----~~fr~il~~l~-a~~R 404 (732)
T TIGR00603 330 CRFTSDAKERFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA----AMFRRVLTIVQ-AHCK 404 (732)
T ss_pred EEEecCcccccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH----HHHHHHHHhcC-cCcE
Confidence 6677754332 246899999998754322110 112 3688999999999853 34555666554 3567
Q ss_pred EEEcccCCChHHHHHHhccccCCCeeEe-----eeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHH--HHHHhhhh
Q psy6275 198 VFLSATIPNASQFAQWVSHLHHQPCHVV-----YTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQV--AMNVLANA 270 (391)
Q Consensus 198 i~~SAT~~~~~~~~~~l~~~~~~~~~v~-----~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~ 270 (391)
++||||+....+....+..+.+...+.. ...+-..+++..-++++...-.. ..|....... .+..++
T Consensus 405 LGLTATP~ReD~~~~~L~~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~----~~yl~~~~~~k~~l~~~n-- 478 (732)
T TIGR00603 405 LGLTATLVREDDKITDLNFLIGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFY----REYLRENSRKRMLLYVMN-- 478 (732)
T ss_pred EEEeecCcccCCchhhhhhhcCCeeeecCHHHHHhCCccccceEEEEEecCCHHHH----HHHHHhcchhhhHHhhhC--
Confidence 9999999765322222222222222211 11222333433333333211000 0111100000 000110
Q ss_pred hhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHH--cCCCcEEEEEcchhhHHHHHHHhhc---cCCCChHHHHHHHHHH
Q psy6275 271 GDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIME--RNLAPVIVFSFSKKDCEIYAMQMAK---LNFNETEEVKLVDDVF 345 (391)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~iIF~~t~~~~~~la~~L~~---~g~~~~~~r~~~~~~~ 345 (391)
++++..+..++.. ..+.++||||.+...++.++..|.. .|-....+|..+.+.|
T Consensus 479 ---------------------p~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~~~~I~G~ts~~ER~~il~~F 537 (732)
T TIGR00603 479 ---------------------PNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLGKPFIYGPTSQQERMQILQNF 537 (732)
T ss_pred ---------------------hHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcCCceEECCCCHHHHHHHHHHH
Confidence 1233333333332 3567999999999999999999954 2555668999999999
Q ss_pred HH--HhhhcchhhccCcchHhHHHHHHhhhhhccCCC
Q psy6275 346 SN--AMDVLSEEDRKLPQIENILPLLRRGIGIHHGVK 380 (391)
Q Consensus 346 ~~--~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~~~ 380 (391)
+. .+.+|+.+ +++.+|||++.++.
T Consensus 538 r~~~~i~vLv~S-----------kVgdeGIDlP~a~v 563 (732)
T TIGR00603 538 QHNPKVNTIFLS-----------KVGDTSIDLPEANV 563 (732)
T ss_pred HhCCCccEEEEe-----------cccccccCCCCCCE
Confidence 85 35667666 48899999986654
|
All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.4e-21 Score=172.47 Aligned_cols=261 Identities=19% Similarity=0.262 Sum_probs=179.9
Q ss_pred cCCCCCcHHHHHHHHHH----hcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc--c
Q psy6275 53 EYPFVLDPFQKEAILCI----ENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK--D 126 (391)
Q Consensus 53 ~~~~~~~~~Q~~~i~~i----~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~--~ 126 (391)
.++-++++.|+.+-..+ .+.++.++.|-||+|||....-.+-..+.+|+++.+..|....+-+++.+++..+. +
T Consensus 93 ~W~G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRvDVclEl~~Rlk~aF~~~~ 172 (441)
T COG4098 93 QWKGTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVDVCLELYPRLKQAFSNCD 172 (441)
T ss_pred eeccccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcCCeEEEecCcccchHHHHHHHHHhhccCC
Confidence 34446999999987654 56789999999999999998888888899999999999999999999999999998 6
Q ss_pred ceeeeCCcccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEcccCCC
Q psy6275 127 VGLITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPN 206 (391)
Q Consensus 127 v~~~~g~~~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 206 (391)
+..++|++...-.++++|+|...++++-. .+|++|+||+|.+.-.........+-.......-.|.+|||+++
T Consensus 173 I~~Lyg~S~~~fr~plvVaTtHQLlrFk~-------aFD~liIDEVDAFP~~~d~~L~~Av~~ark~~g~~IylTATp~k 245 (441)
T COG4098 173 IDLLYGDSDSYFRAPLVVATTHQLLRFKQ-------AFDLLIIDEVDAFPFSDDQSLQYAVKKARKKEGATIYLTATPTK 245 (441)
T ss_pred eeeEecCCchhccccEEEEehHHHHHHHh-------hccEEEEeccccccccCCHHHHHHHHHhhcccCceEEEecCChH
Confidence 67799998877679999999998887543 79999999999875332222233444445567789999999876
Q ss_pred hHHHHHHhccccCCCeeEe-ee---CCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhhhccCCCCCC
Q psy6275 207 ASQFAQWVSHLHHQPCHVV-YT---DYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGG 282 (391)
Q Consensus 207 ~~~~~~~l~~~~~~~~~v~-~~---~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (391)
. +.+.+ ..+..... .+ ..+|-++..+++.-+ +...+..
T Consensus 246 ~--l~r~~---~~g~~~~~klp~RfH~~pLpvPkf~w~~~-----------------~~k~l~r---------------- 287 (441)
T COG4098 246 K--LERKI---LKGNLRILKLPARFHGKPLPVPKFVWIGN-----------------WNKKLQR---------------- 287 (441)
T ss_pred H--HHHHh---hhCCeeEeecchhhcCCCCCCCceEEecc-----------------HHHHhhh----------------
Confidence 5 22221 12222221 11 234555555555321 1111100
Q ss_pred CCCCCCCCCcccHHHHHHHHHH--cCCCcEEEEEcchhhHHHHHHHhhc-cCCCC-------hHHHHHHHHHHHH-Hhhh
Q psy6275 283 RKGGPKGGVQTNCFKIVKMIME--RNLAPVIVFSFSKKDCEIYAMQMAK-LNFNE-------TEEVKLVDDVFSN-AMDV 351 (391)
Q Consensus 283 ~~~~~~~~~~~~~~~l~~~l~~--~~~~~~iIF~~t~~~~~~la~~L~~-~g~~~-------~~~r~~~~~~~~~-~~~~ 351 (391)
+.-+. .+++.+.. ..+.+++||+++....++++..|.. ..... ...|.+..+.|++ .++.
T Consensus 288 ------~kl~~---kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d~~R~EkV~~fR~G~~~l 358 (441)
T COG4098 288 ------NKLPL---KLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSEDQHRKEKVEAFRDGKITL 358 (441)
T ss_pred ------ccCCH---HHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccCccHHHHHHHHHcCceEE
Confidence 00011 34444443 2357999999999999999999943 22211 1335555555665 6677
Q ss_pred cchhhccCcchHhHHHHHHhhhhhccC
Q psy6275 352 LSEEDRKLPQIENILPLLRRGIGIHHG 378 (391)
Q Consensus 352 l~~~d~~~~~~~~~~~~l~~GI~~~h~ 378 (391)
|+.| ..|+||+-|+..
T Consensus 359 LiTT-----------TILERGVTfp~v 374 (441)
T COG4098 359 LITT-----------TILERGVTFPNV 374 (441)
T ss_pred EEEe-----------ehhhcccccccc
Confidence 6666 599999998754
|
|
| >KOG0950|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-21 Score=195.38 Aligned_cols=303 Identities=24% Similarity=0.289 Sum_probs=197.8
Q ss_pred ccCCCC-CcHHHHHHHH--HHhcCCcEEEEecCCcchHHHHHHHHHHH-HhcCCeEEEEcccHHHHHHHHHHHHHhcccc
Q psy6275 52 REYPFV-LDPFQKEAIL--CIENNQSVLVSAHTSAGKTVVAEYAIASS-LKQSQRVIYTTPIKALSNQKYREFEEQFKDV 127 (391)
Q Consensus 52 ~~~~~~-~~~~Q~~~i~--~i~~~~~~li~apTGsGKT~~~~~~~~~~-l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v 127 (391)
+..|.. ++.||.+++. .++.++|.+..+||+.|||+++.+.++.. +.....++.+.|..+.+.+-...+..+....
T Consensus 217 ~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr~~llilp~vsiv~Ek~~~l~~~~~~~ 296 (1008)
T KOG0950|consen 217 KDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRRNVLLILPYVSIVQEKISALSPFSIDL 296 (1008)
T ss_pred HhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhhceeEecceeehhHHHHhhhhhhcccc
Confidence 344554 8999999985 57789999999999999999997777664 4567789999999999888887777776644
Q ss_pred ee----eeCCccc---CCCCCEEEEcHHHHHHHHhcC--ccccCccceEEEecccccCccccchhHHHHHHHh-----CC
Q psy6275 128 GL----ITGDVTI---NPSSSCLIMTTEILRNMLYRG--SEITREVGWVIFDEIHYMRDKERGYVWEETLILL-----SD 193 (391)
Q Consensus 128 ~~----~~g~~~~---~~~~~I~v~Tp~~l~~~l~~~--~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~-----~~ 193 (391)
|+ ..|..+. ....++.|||.|+-..++..- ...+..+++||+||.|.+.+.++|..++.++..+ ..
T Consensus 297 G~~ve~y~g~~~p~~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~~~~~ 376 (1008)
T KOG0950|consen 297 GFPVEEYAGRFPPEKRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKILYENLET 376 (1008)
T ss_pred CCcchhhcccCCCCCcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHHHHHHhcccc
Confidence 33 4444332 235679999999866554431 1235589999999999999999999999888754 33
Q ss_pred CCcEEEEcccCCChHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhh
Q psy6275 194 NVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDA 273 (391)
Q Consensus 194 ~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 273 (391)
..|+|+||||++|...+..|+. ..++....||+++.+++.. +..++... ....+......
T Consensus 377 ~~~iIGMSATi~N~~lL~~~L~------A~~y~t~fRPv~L~E~ik~--G~~i~~~~------------r~~~lr~ia~l 436 (1008)
T KOG0950|consen 377 SVQIIGMSATIPNNSLLQDWLD------AFVYTTRFRPVPLKEYIKP--GSLIYESS------------RNKVLREIANL 436 (1008)
T ss_pred ceeEeeeecccCChHHHHHHhh------hhheecccCcccchhccCC--Ccccccch------------hhHHHHHhhhh
Confidence 4779999999999999999997 4678888999999888743 22222110 11111111100
Q ss_pred hccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCChHHHHHHH--HHHHHHhhh
Q psy6275 274 AKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNETEEVKLVD--DVFSNAMDV 351 (391)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~~~~r~~~~--~~~~~~~~~ 351 (391)
.+ ....++.+ +.+..+....... +.++||||++|+.|+.+|..+... +.......... .......+.
T Consensus 437 -~~-------~~~g~~dp-D~~v~L~tet~~e-~~~~lvfc~sk~~ce~~a~~~~~~-vpk~~~~e~~~~~~~~~s~s~~ 505 (1008)
T KOG0950|consen 437 -YS-------SNLGDEDP-DHLVGLCTETAPE-GSSVLVFCPSKKNCENVASLIAKK-VPKHIKSEKRLGLWELLSISNL 505 (1008)
T ss_pred -hh-------hhcccCCC-cceeeehhhhhhc-CCeEEEEcCcccchHHHHHHHHHH-hhHhhhhhhhhhHHHHHHHHhH
Confidence 00 00001111 2223333322222 347999999999999999777653 11111100000 011111111
Q ss_pred cchhhccCcchHhHHHHHHhhhhhccCCCCcccccc
Q psy6275 352 LSEEDRKLPQIENILPLLRRGIGIHHGVKPYGLWQS 387 (391)
Q Consensus 352 l~~~d~~~~~~~~~~~~l~~GI~~~h~~~~~~~r~~ 387 (391)
+..-+..+. .++...+..|++|||+|++.+.|+.
T Consensus 506 lr~~~~~ld--~Vl~~ti~~GvAyHhaGLT~eER~~ 539 (1008)
T KOG0950|consen 506 LRRIPGILD--PVLAKTIPYGVAYHHAGLTSEEREI 539 (1008)
T ss_pred hhcCCcccc--hHHheeccccceecccccccchHHH
Confidence 111222222 4577899999999999999998863
|
|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.6e-21 Score=194.59 Aligned_cols=145 Identities=26% Similarity=0.272 Sum_probs=115.2
Q ss_pred CCCCCcHHHHHHHHHHhc---CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc-ccee
Q psy6275 54 YPFVLDPFQKEAILCIEN---NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK-DVGL 129 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i~~---~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~-~v~~ 129 (391)
..+.+++.|+++++.+.+ ++++++.|+||||||.+|+.++...+..+.++||++|+++|+.|+++.+++.++ .+..
T Consensus 141 ~~~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~ 220 (679)
T PRK05580 141 EPPTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAV 220 (679)
T ss_pred CCCCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEE
Confidence 345799999999999876 478999999999999999999888888899999999999999999999998776 6778
Q ss_pred eeCCccc-----------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccc-cchh--HHHH--HHHhCC
Q psy6275 130 ITGDVTI-----------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKE-RGYV--WEET--LILLSD 193 (391)
Q Consensus 130 ~~g~~~~-----------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~-~~~~--~~~i--~~~~~~ 193 (391)
++|+.+. ....+|+|+|++.+. ..+.+++++|+||+|...... .++. ...+ ......
T Consensus 221 ~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra~~~ 293 (679)
T PRK05580 221 LHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRAKLE 293 (679)
T ss_pred EECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHHHHHHHHhhcc
Confidence 8887653 235789999998764 346799999999999764321 1221 2222 223346
Q ss_pred CCcEEEEcccCC
Q psy6275 194 NVRFVFLSATIP 205 (391)
Q Consensus 194 ~~~~i~~SAT~~ 205 (391)
+.+++++|||++
T Consensus 294 ~~~~il~SATps 305 (679)
T PRK05580 294 NIPVVLGSATPS 305 (679)
T ss_pred CCCEEEEcCCCC
Confidence 799999999975
|
|
| >KOG0354|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.3e-21 Score=189.41 Aligned_cols=164 Identities=21% Similarity=0.274 Sum_probs=124.0
Q ss_pred CccCCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc--CCeEEEEcccHHHHHHHHHHHHHhcc--c
Q psy6275 51 AREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ--SQRVIYTTPIKALSNQKYREFEEQFK--D 126 (391)
Q Consensus 51 ~~~~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~--~~~vlvl~P~~~L~~q~~~~~~~~~~--~ 126 (391)
...-.+.+++||.+....++ ++|+++++|||+|||+++...+..++.. .+++++++|++-|+.|+...++..+. .
T Consensus 56 ~~p~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~~~~~~~~ 134 (746)
T KOG0354|consen 56 IYPTNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACFSIYLIPYS 134 (746)
T ss_pred cccCcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHHhhccCccc
Confidence 33344579999999998888 9999999999999999999999998853 58999999999999999988888775 2
Q ss_pred ceeeeCC-cccC------CCCCEEEEcHHHHHHHHhcCcc-ccCccceEEEecccccCcc-ccchhHHHHHHHhCCCCcE
Q psy6275 127 VGLITGD-VTIN------PSSSCLIMTTEILRNMLYRGSE-ITREVGWVIFDEIHYMRDK-ERGYVWEETLILLSDNVRF 197 (391)
Q Consensus 127 v~~~~g~-~~~~------~~~~I~v~Tp~~l~~~l~~~~~-~l~~~~~lViDE~h~~~~~-~~~~~~~~i~~~~~~~~~~ 197 (391)
+....|+ .... ...+|+|+||+.+.+-+.+... .++.+.++||||||+.... .+...+...+..-....|+
T Consensus 135 ~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~~~qI 214 (746)
T KOG0354|consen 135 VTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQGNQI 214 (746)
T ss_pred ceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhhccccE
Confidence 3233333 3322 2468999999999988876543 3689999999999987532 2333344444444455699
Q ss_pred EEEcccCCCh-HHHHHHhc
Q psy6275 198 VFLSATIPNA-SQFAQWVS 215 (391)
Q Consensus 198 i~~SAT~~~~-~~~~~~l~ 215 (391)
+++|||+.+. .++.+.+.
T Consensus 215 LgLTASpG~~~~~v~~~I~ 233 (746)
T KOG0354|consen 215 LGLTASPGSKLEQVQNVID 233 (746)
T ss_pred EEEecCCCccHHHHHHHHH
Confidence 9999999865 55555544
|
|
| >PRK11131 ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6e-21 Score=201.35 Aligned_cols=255 Identities=17% Similarity=0.219 Sum_probs=161.3
Q ss_pred CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHH-HHHHHhc--CCeEEEEcccH----HHHHHHHHHHHHhcc-ccee
Q psy6275 58 LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYA-IASSLKQ--SQRVIYTTPIK----ALSNQKYREFEEQFK-DVGL 129 (391)
Q Consensus 58 ~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~-~~~~l~~--~~~vlvl~P~~----~L~~q~~~~~~~~~~-~v~~ 129 (391)
...+-.+.+..+.+++.++++|+||||||+. +| ++..... .+.+++..|.+ +|+.++.+++....+ .+|+
T Consensus 75 i~~~r~~Il~ai~~~~VviI~GeTGSGKTTq--lPq~lle~g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY 152 (1294)
T PRK11131 75 VSQKKQDILEAIRDHQVVIVAGETGSGKTTQ--LPKICLELGRGVKGLIGHTQPRRLAARTVANRIAEELETELGGCVGY 152 (1294)
T ss_pred HHHHHHHHHHHHHhCCeEEEECCCCCCHHHH--HHHHHHHcCCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcceece
Confidence 3455556667778888899999999999995 44 2222222 24677778864 777777777765333 4444
Q ss_pred eeC-CcccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccc-cCccccchhHHHHHHHhC--CCCcEEEEcccCC
Q psy6275 130 ITG-DVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHY-MRDKERGYVWEETLILLS--DNVRFVFLSATIP 205 (391)
Q Consensus 130 ~~g-~~~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~-~~~~~~~~~~~~i~~~~~--~~~~~i~~SAT~~ 205 (391)
-.. +.....+++|+|+||++|++.+.... .+++++++|+||||+ +++.++. +..+...++ ++.|+|+||||++
T Consensus 153 ~vrf~~~~s~~t~I~v~TpG~LL~~l~~d~-~Ls~~~~IIIDEAHERsLn~DfL--Lg~Lk~lL~~rpdlKvILmSATid 229 (1294)
T PRK11131 153 KVRFNDQVSDNTMVKLMTDGILLAEIQQDR-LLMQYDTIIIDEAHERSLNIDFI--LGYLKELLPRRPDLKVIITSATID 229 (1294)
T ss_pred eecCccccCCCCCEEEEChHHHHHHHhcCC-ccccCcEEEecCccccccccchH--HHHHHHhhhcCCCceEEEeeCCCC
Confidence 222 23345578999999999999887654 489999999999995 6665332 222333332 4689999999994
Q ss_pred ChHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhhhccCCCCCCCCC
Q psy6275 206 NASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKG 285 (391)
Q Consensus 206 ~~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (391)
.+.+++++. ..| ++...++..++++++......+. ....
T Consensus 230 -~e~fs~~F~---~ap--vI~V~Gr~~pVei~y~p~~~~~~-------~~~~---------------------------- 268 (1294)
T PRK11131 230 -PERFSRHFN---NAP--IIEVSGRTYPVEVRYRPIVEEAD-------DTER---------------------------- 268 (1294)
T ss_pred -HHHHHHHcC---CCC--EEEEcCccccceEEEeecccccc-------hhhH----------------------------
Confidence 556777654 233 34445666777777664331100 0000
Q ss_pred CCCCCCcccHHHHH---HHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCC-----------hHHHHHHHHHHHHHhhh
Q psy6275 286 GPKGGVQTNCFKIV---KMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNE-----------TEEVKLVDDVFSNAMDV 351 (391)
Q Consensus 286 ~~~~~~~~~~~~l~---~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~-----------~~~r~~~~~~~~~~~~~ 351 (391)
+.+..++ ..+...+.+.+|||++++.+++.+++.|.+.++.. .+++..+... .+..++
T Consensus 269 -------d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~-~g~rkI 340 (1294)
T PRK11131 269 -------DQLQAIFDAVDELGREGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS-HSGRRI 340 (1294)
T ss_pred -------HHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc-cCCeeE
Confidence 0111222 22223445689999999999999999999876542 1344444332 123344
Q ss_pred cchhhccCcchHhHHHHHHhhhhhcc
Q psy6275 352 LSEEDRKLPQIENILPLLRRGIGIHH 377 (391)
Q Consensus 352 l~~~d~~~~~~~~~~~~l~~GI~~~h 377 (391)
+ ..|+++++||+|+.
T Consensus 341 I-----------VATNIAEtSITIpg 355 (1294)
T PRK11131 341 V-----------LATNVAETSLTVPG 355 (1294)
T ss_pred E-----------EeccHHhhccccCc
Confidence 4 45569999999863
|
|
| >PRK09694 helicase Cas3; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-20 Score=193.38 Aligned_cols=152 Identities=20% Similarity=0.176 Sum_probs=109.6
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcC--CeEEEEcccHHHHHHHHHHHHHhcc------c
Q psy6275 55 PFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQS--QRVIYTTPIKALSNQKYREFEEQFK------D 126 (391)
Q Consensus 55 ~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~--~~vlvl~P~~~L~~q~~~~~~~~~~------~ 126 (391)
++.|+|+|..+......+..+++.||||+|||.+++.++...+..+ .+++|..||+++++++++++.+... .
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~~ 363 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEALASKLFPSPN 363 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 5679999998865444567899999999999999988777655443 6899999999999999999876332 4
Q ss_pred ceeeeCCcccC-------------------------------C---CCCEEEEcHHHHHHH-HhcCccccCccc----eE
Q psy6275 127 VGLITGDVTIN-------------------------------P---SSSCLIMTTEILRNM-LYRGSEITREVG----WV 167 (391)
Q Consensus 127 v~~~~g~~~~~-------------------------------~---~~~I~v~Tp~~l~~~-l~~~~~~l~~~~----~l 167 (391)
+.+.||....+ . -.+|+|+|.++++.. +..+...++.++ +|
T Consensus 364 v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~svv 443 (878)
T PRK09694 364 LILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRSVL 443 (878)
T ss_pred eEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccCeE
Confidence 66676654311 0 158999999887743 333333444444 89
Q ss_pred EEecccccCccccchhHHHHHHHh-CCCCcEEEEcccCCCh
Q psy6275 168 IFDEIHYMRDKERGYVWEETLILL-SDNVRFVFLSATIPNA 207 (391)
Q Consensus 168 ViDE~h~~~~~~~~~~~~~i~~~~-~~~~~~i~~SAT~~~~ 207 (391)
||||+|.+.. .....+..+++.+ .....+|+||||+|..
T Consensus 444 IiDEVHAyD~-ym~~lL~~~L~~l~~~g~~vIllSATLP~~ 483 (878)
T PRK09694 444 IVDEVHAYDA-YMYGLLEAVLKAQAQAGGSVILLSATLPAT 483 (878)
T ss_pred EEechhhCCH-HHHHHHHHHHHHHHhcCCcEEEEeCCCCHH
Confidence 9999998732 3344455555543 3467899999999875
|
|
| >PRK12898 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.2e-21 Score=191.25 Aligned_cols=120 Identities=18% Similarity=0.125 Sum_probs=99.0
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc----ccee
Q psy6275 54 YPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK----DVGL 129 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~----~v~~ 129 (391)
+|..|+++|..+++.++.|+ +..+.||+|||+++.+|++.....+..++|++||++|+.|.++.+..++. .++.
T Consensus 100 lg~~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~G~~v~VvTptreLA~qdae~~~~l~~~lGlsv~~ 177 (656)
T PRK12898 100 LGQRHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALAGLPVHVITVNDYLAERDAELMRPLYEALGLTVGC 177 (656)
T ss_pred hCCCCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhcCCeEEEEcCcHHHHHHHHHHHHHHHhhcCCEEEE
Confidence 57789999999999999998 99999999999999999998888899999999999999999999998876 6677
Q ss_pred eeCCccc-----CCCCCEEEEcHHHH-HHHHhcCc-------------------------cccCccceEEEeccccc
Q psy6275 130 ITGDVTI-----NPSSSCLIMTTEIL-RNMLYRGS-------------------------EITREVGWVIFDEIHYM 175 (391)
Q Consensus 130 ~~g~~~~-----~~~~~I~v~Tp~~l-~~~l~~~~-------------------------~~l~~~~~lViDE~h~~ 175 (391)
+.|+... ...++|+++|...+ .+++.... ...+.+.+.|+||+|.+
T Consensus 178 i~gg~~~~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvDEvDSi 254 (656)
T PRK12898 178 VVEDQSPDERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVDEADSV 254 (656)
T ss_pred EeCCCCHHHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEeecccce
Confidence 8787653 23689999998654 33433221 12356889999999975
|
|
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.3e-21 Score=185.46 Aligned_cols=257 Identities=20% Similarity=0.258 Sum_probs=189.0
Q ss_pred CCCCccCCCCCcHHHHHHHHHHhcC------CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHH
Q psy6275 48 EKPAREYPFVLDPFQKEAILCIENN------QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFE 121 (391)
Q Consensus 48 ~~~~~~~~~~~~~~Q~~~i~~i~~~------~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~ 121 (391)
.+.+..++|++|..|++++..|..+ .+-++.|.-|||||.+++++++..+..|.++..++||.-||.|.+..+.
T Consensus 253 ~~~~~~LPF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~ 332 (677)
T COG1200 253 AKFLAALPFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAGYQAALMAPTEILAEQHYESLR 332 (677)
T ss_pred HHHHHhCCCCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHH
Confidence 3556788999999999999988543 4679999999999999999999999999999999999999999999999
Q ss_pred Hhcc----cceeeeCCccc-----------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHH
Q psy6275 122 EQFK----DVGLITGDVTI-----------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEE 186 (391)
Q Consensus 122 ~~~~----~v~~~~g~~~~-----------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~ 186 (391)
++++ .|.+++|...- +.+.+|+|+|..- .+....+.++.++|+||-|++ |..-+.
T Consensus 333 ~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHAL-----iQd~V~F~~LgLVIiDEQHRF-----GV~QR~ 402 (677)
T COG1200 333 KWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHAL-----IQDKVEFHNLGLVIIDEQHRF-----GVHQRL 402 (677)
T ss_pred HHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchh-----hhcceeecceeEEEEeccccc-----cHHHHH
Confidence 9998 47778887652 3468999999963 344556889999999999964 777776
Q ss_pred HHHHhCC-CCcEEEEcccCC-ChHHHHHHhccccCCCeeEeeeCCCC---cCceEeeccCCCCCeeeeecCchhhhhchH
Q psy6275 187 TLILLSD-NVRFVFLSATIP-NASQFAQWVSHLHHQPCHVVYTDYRP---TPLQHYLFPNGGDGIHLIVDDNKFKEHNYQ 261 (391)
Q Consensus 187 i~~~~~~-~~~~i~~SAT~~-~~~~~~~~l~~~~~~~~~v~~~~~~~---~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~ 261 (391)
.+..-+. .+.++.||||+- ++-.+.-+ + ...+..-++-| .||..+++..... .
T Consensus 403 ~L~~KG~~~Ph~LvMTATPIPRTLAlt~f-g-----DldvS~IdElP~GRkpI~T~~i~~~~~----------------~ 460 (677)
T COG1200 403 ALREKGEQNPHVLVMTATPIPRTLALTAF-G-----DLDVSIIDELPPGRKPITTVVIPHERR----------------P 460 (677)
T ss_pred HHHHhCCCCCcEEEEeCCCchHHHHHHHh-c-----cccchhhccCCCCCCceEEEEeccccH----------------H
Confidence 6666666 689999999963 33222222 1 11222223333 2566665532210 0
Q ss_pred HHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchh--------hHHHHHHHhhcc---
Q psy6275 262 VAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKK--------DCEIYAMQMAKL--- 330 (391)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~--------~~~~la~~L~~~--- 330 (391)
.....+.+.+. ++.++.+-|+-.+ .|+.+++.|...
T Consensus 461 -------------------------------~v~e~i~~ei~--~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~ 507 (677)
T COG1200 461 -------------------------------EVYERIREEIA--KGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPE 507 (677)
T ss_pred -------------------------------HHHHHHHHHHH--cCCEEEEEeccccccccchhhhHHHHHHHHHHHccc
Confidence 11223333333 4669999998654 455666666642
Q ss_pred -------CCCChHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhccCCC
Q psy6275 331 -------NFNETEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHGVK 380 (391)
Q Consensus 331 -------g~~~~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~~~ 380 (391)
|-...++++.+++.|++ .+++|++| .+++.|||+++|.+
T Consensus 508 ~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaT-----------TVIEVGVdVPnATv 554 (677)
T COG1200 508 LKVGLVHGRMKPAEKDAVMEAFKEGEIDILVAT-----------TVIEVGVDVPNATV 554 (677)
T ss_pred ceeEEEecCCChHHHHHHHHHHHcCCCcEEEEe-----------eEEEecccCCCCeE
Confidence 33455899999999999 88999988 58999999999875
|
|
| >TIGR03714 secA2 accessory Sec system translocase SecA2 | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.7e-20 Score=186.70 Aligned_cols=119 Identities=18% Similarity=0.193 Sum_probs=88.1
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc----cceee
Q psy6275 55 PFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK----DVGLI 130 (391)
Q Consensus 55 ~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~----~v~~~ 130 (391)
|..|+++|......+..| .++.++||+|||++|.+|++.....+..++|++|+++|+.|.++.+..+.. .++..
T Consensus 68 glrpydVQlig~l~l~~G--~Iaem~TGeGKTLta~Lpa~l~aL~g~~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~~~ 145 (762)
T TIGR03714 68 GMFPYDVQVLGAIVLHQG--NIAEMKTGEGKTLTATMPLYLNALTGKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLG 145 (762)
T ss_pred CCCccHHHHHHHHHhcCC--ceeEecCCcchHHHHHHHHHHHhhcCCceEEeCCCHHHHHHHHHHHHHHHhhcCCcEEEE
Confidence 444555555544444444 699999999999999999877666788899999999999999999887765 45554
Q ss_pred eCCcc---c-------CCCCCEEEEcHHHH-HHHHhcC------ccccCccceEEEeccccc
Q psy6275 131 TGDVT---I-------NPSSSCLIMTTEIL-RNMLYRG------SEITREVGWVIFDEIHYM 175 (391)
Q Consensus 131 ~g~~~---~-------~~~~~I~v~Tp~~l-~~~l~~~------~~~l~~~~~lViDE~h~~ 175 (391)
.++.. . ...++|+++||+++ .+++... ...++.+.++|+||||.|
T Consensus 146 ~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsI 207 (762)
T TIGR03714 146 VVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSV 207 (762)
T ss_pred ECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhH
Confidence 44311 1 13689999999998 4544321 234678999999999987
|
Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii. |
| >PRK09200 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=3e-20 Score=188.92 Aligned_cols=121 Identities=19% Similarity=0.234 Sum_probs=100.3
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc----ccee
Q psy6275 54 YPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK----DVGL 129 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~----~v~~ 129 (391)
+|..|+++|..+...+..|+ ++.+.||+|||+++.+|++.....+..+.|++||+.||.|.+..+..++. .+++
T Consensus 75 ~g~~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~G~~v~VvTpt~~LA~qd~e~~~~l~~~lGl~v~~ 152 (790)
T PRK09200 75 LGMRPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALEGKGVHLITVNDYLAKRDAEEMGQVYEFLGLTVGL 152 (790)
T ss_pred hCCCCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEE
Confidence 47789999999999888876 99999999999999999987666899999999999999999999998887 5677
Q ss_pred eeCCcc-c-----CCCCCEEEEcHHHH-HHHHhcC------ccccCccceEEEecccccC
Q psy6275 130 ITGDVT-I-----NPSSSCLIMTTEIL-RNMLYRG------SEITREVGWVIFDEIHYMR 176 (391)
Q Consensus 130 ~~g~~~-~-----~~~~~I~v~Tp~~l-~~~l~~~------~~~l~~~~~lViDE~h~~~ 176 (391)
+.|+.+ . ..+++|+++||+++ .+++... ...++.+.++|+||||.++
T Consensus 153 i~g~~~~~~~r~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiL 212 (790)
T PRK09200 153 NFSDIDDASEKKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSIL 212 (790)
T ss_pred EeCCCCcHHHHHHhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccce
Confidence 777766 2 23589999999988 4444332 1356789999999999863
|
|
| >TIGR00963 secA preprotein translocase, SecA subunit | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.4e-20 Score=186.89 Aligned_cols=121 Identities=17% Similarity=0.168 Sum_probs=100.2
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc----ccee
Q psy6275 54 YPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK----DVGL 129 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~----~v~~ 129 (391)
+|..|+++|..+...+..|+ +..++||+|||+++.+|++.....+..+.|++||+.||.|.++.+..++. .++.
T Consensus 53 lg~~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~G~~V~VvTpt~~LA~qdae~~~~l~~~LGLsv~~ 130 (745)
T TIGR00963 53 LGMRPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGL 130 (745)
T ss_pred hCCCccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHhCCCEEEEcCCHHHHHHHHHHHHHHhccCCCeEEE
Confidence 47789999999998888776 99999999999999999854334577899999999999999999999987 5666
Q ss_pred eeCCcccC-----CCCCEEEEcHHHH-HHHHhcC------ccccCccceEEEecccccC
Q psy6275 130 ITGDVTIN-----PSSSCLIMTTEIL-RNMLYRG------SEITREVGWVIFDEIHYMR 176 (391)
Q Consensus 130 ~~g~~~~~-----~~~~I~v~Tp~~l-~~~l~~~------~~~l~~~~~lViDE~h~~~ 176 (391)
++|+.... -.++|+++||+++ ++++..+ ...++.+.++|+||+|.++
T Consensus 131 i~g~~~~~~r~~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~L 189 (745)
T TIGR00963 131 ILSGMSPEERREAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSIL 189 (745)
T ss_pred EeCCCCHHHHHHhcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHh
Confidence 77765532 2579999999998 7777665 2356889999999999874
|
The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. |
| >KOG0351|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.9e-20 Score=191.82 Aligned_cols=252 Identities=15% Similarity=0.187 Sum_probs=176.8
Q ss_pred CCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccce
Q psy6275 50 PAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVG 128 (391)
Q Consensus 50 ~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~ 128 (391)
....+|.. +++-|.++|..++.|+++++.+|||.||++||.+|++-. ++-.|||.|..+|+..+...+....-...
T Consensus 256 l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~---~gitvVISPL~SLm~DQv~~L~~~~I~a~ 332 (941)
T KOG0351|consen 256 LKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL---GGVTVVISPLISLMQDQVTHLSKKGIPAC 332 (941)
T ss_pred HHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc---CCceEEeccHHHHHHHHHHhhhhcCccee
Confidence 34456777 999999999999999999999999999999999997654 67899999999999998888855444555
Q ss_pred eeeCCccc-----------C--CCCCEEEEcHHHHHHH--HhcCccccCc---cceEEEecccccCccc--cchhHHHHH
Q psy6275 129 LITGDVTI-----------N--PSSSCLIMTTEILRNM--LYRGSEITRE---VGWVIFDEIHYMRDKE--RGYVWEETL 188 (391)
Q Consensus 129 ~~~g~~~~-----------~--~~~~I~v~Tp~~l~~~--l~~~~~~l~~---~~~lViDE~h~~~~~~--~~~~~~~i~ 188 (391)
.++++... . ...+|+..|||.+... +......+.. +.++|+||||++..|+ |.+.+..+.
T Consensus 333 ~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~ 412 (941)
T KOG0351|consen 333 FLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKRLG 412 (941)
T ss_pred eccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHHHHHH
Confidence 56665443 1 2467999999987742 1111222333 8899999999998875 555555443
Q ss_pred HHh--CCCCcEEEEcccCCCh--HHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHH
Q psy6275 189 ILL--SDNVRFVFLSATIPNA--SQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAM 264 (391)
Q Consensus 189 ~~~--~~~~~~i~~SAT~~~~--~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 264 (391)
... -....++++|||.... +++.+.|+- ....++.......++.+.|..-.+.
T Consensus 413 ~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l---~~~~~~~~sfnR~NL~yeV~~k~~~-------------------- 469 (941)
T KOG0351|consen 413 LLRIRFPGVPFIALTATATERVREDVIRSLGL---RNPELFKSSFNRPNLKYEVSPKTDK-------------------- 469 (941)
T ss_pred HHHhhCCCCCeEEeehhccHHHHHHHHHHhCC---CCcceecccCCCCCceEEEEeccCc--------------------
Confidence 322 2348999999999654 778887753 2233454444455555555432110
Q ss_pred HHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHH-HcCCCcEEEEEcchhhHHHHHHHhhccCCCCh--------
Q psy6275 265 NVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIM-ERNLAPVIVFSFSKKDCEIYAMQMAKLNFNET-------- 335 (391)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~~-------- 335 (391)
.....+..... ..+.+.+||||.+|++|+.++..|++.|..+.
T Consensus 470 ----------------------------~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~ 521 (941)
T KOG0351|consen 470 ----------------------------DALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPP 521 (941)
T ss_pred ----------------------------cchHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCH
Confidence 11223333333 34568999999999999999999999876654
Q ss_pred HHHHHHHHHHHH-Hhhhcchh
Q psy6275 336 EEVKLVDDVFSN-AMDVLSEE 355 (391)
Q Consensus 336 ~~r~~~~~~~~~-~~~~l~~~ 355 (391)
.+|..+...+-. .+.++++|
T Consensus 522 ~~R~~Vq~~w~~~~~~VivAT 542 (941)
T KOG0351|consen 522 KERETVQKAWMSDKIRVIVAT 542 (941)
T ss_pred HHHHHHHHHHhcCCCeEEEEE
Confidence 567777666655 67777766
|
|
| >TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-19 Score=191.66 Aligned_cols=259 Identities=15% Similarity=0.182 Sum_probs=164.5
Q ss_pred HHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHH-hcCCeEEEEcccHHHHHHHHHHHHHhcc-cceeeeC-----
Q psy6275 60 PFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSL-KQSQRVIYTTPIKALSNQKYREFEEQFK-DVGLITG----- 132 (391)
Q Consensus 60 ~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l-~~~~~vlvl~P~~~L~~q~~~~~~~~~~-~v~~~~g----- 132 (391)
....+.+..+.+++.++++|+||||||+.....++..- ...++++++.|.|-.+..++.++.+..+ .++...|
T Consensus 70 ~~~~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~vR~ 149 (1283)
T TIGR01967 70 AKREDIAEAIAENQVVIIAGETGSGKTTQLPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYKVRF 149 (1283)
T ss_pred HHHHHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEeeEEcC
Confidence 33455666777888999999999999996543333321 2235788889999888888888777665 4443333
Q ss_pred CcccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccc-cCccccchh-HHHHHHHhCCCCcEEEEcccCCChHHH
Q psy6275 133 DVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHY-MRDKERGYV-WEETLILLSDNVRFVFLSATIPNASQF 210 (391)
Q Consensus 133 ~~~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~-~~~~~~~~~-~~~i~~~~~~~~~~i~~SAT~~~~~~~ 210 (391)
+...+.++.|.++|+|+|+..+.... .+..+++||+||+|+ +++.++... +..++.. .++.|+|+||||+. ...+
T Consensus 150 ~~~~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~-rpdLKlIlmSATld-~~~f 226 (1283)
T TIGR01967 150 HDQVSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPR-RPDLKIIITSATID-PERF 226 (1283)
T ss_pred CcccCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHHHHHhh-CCCCeEEEEeCCcC-HHHH
Confidence 33445678899999999999887654 488999999999995 665533322 2333322 35789999999994 5668
Q ss_pred HHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCC
Q psy6275 211 AQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGG 290 (391)
Q Consensus 211 ~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (391)
+++++. .| ++...++..+++.++....... .. .... ..
T Consensus 227 a~~F~~---ap--vI~V~Gr~~PVev~Y~~~~~~~-------~~-~~~~---~~-------------------------- 264 (1283)
T TIGR01967 227 SRHFNN---AP--IIEVSGRTYPVEVRYRPLVEEQ-------ED-DDLD---QL-------------------------- 264 (1283)
T ss_pred HHHhcC---CC--EEEECCCcccceeEEecccccc-------cc-hhhh---HH--------------------------
Confidence 887642 23 3455667777776665332110 00 0000 00
Q ss_pred CcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCC-----------ChHHHHHHHHHHHHHhhhcchhhccC
Q psy6275 291 VQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFN-----------ETEEVKLVDDVFSNAMDVLSEEDRKL 359 (391)
Q Consensus 291 ~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~-----------~~~~r~~~~~~~~~~~~~l~~~d~~~ 359 (391)
..+..++..+...+.+.+|||++++.+++.+++.|.+.++. ..+++..+ |+.. +.
T Consensus 265 --~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~v---f~~~---------~~ 330 (1283)
T TIGR01967 265 --EAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRV---FQPH---------SG 330 (1283)
T ss_pred --HHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHH---hCCC---------CC
Confidence 01112222222234468999999999999999999876543 12444443 2221 01
Q ss_pred cchHhHHHHHHhhhhhcc
Q psy6275 360 PQIENILPLLRRGIGIHH 377 (391)
Q Consensus 360 ~~~~~~~~~l~~GI~~~h 377 (391)
.++...|++.++||+|+.
T Consensus 331 rkIVLATNIAEtSLTIpg 348 (1283)
T TIGR01967 331 RRIVLATNVAETSLTVPG 348 (1283)
T ss_pred ceEEEeccHHHhccccCC
Confidence 234455579999999964
|
This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >smart00487 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.4e-19 Score=153.74 Aligned_cols=151 Identities=33% Similarity=0.428 Sum_probs=125.3
Q ss_pred CCcHHHHHHHHHHhcC-CcEEEEecCCcchHHHHHHHHHHHHhcC--CeEEEEcccHHHHHHHHHHHHHhcc-----cce
Q psy6275 57 VLDPFQKEAILCIENN-QSVLVSAHTSAGKTVVAEYAIASSLKQS--QRVIYTTPIKALSNQKYREFEEQFK-----DVG 128 (391)
Q Consensus 57 ~~~~~Q~~~i~~i~~~-~~~li~apTGsGKT~~~~~~~~~~l~~~--~~vlvl~P~~~L~~q~~~~~~~~~~-----~v~ 128 (391)
+++++|.++++.+... +++++.+|||+|||.++..++...+..+ .+++|++|+++++.|+...+...+. ...
T Consensus 8 ~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (201)
T smart00487 8 PLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGLKVVG 87 (201)
T ss_pred CCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEEE
Confidence 5999999999999888 9999999999999999998888887664 7899999999999999999998874 233
Q ss_pred eeeCCcc------cCCCC-CEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEc
Q psy6275 129 LITGDVT------INPSS-SCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLS 201 (391)
Q Consensus 129 ~~~g~~~------~~~~~-~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 201 (391)
.+.+... ..... +++++|++.+.+.+.........++++|+||+|.+....+...+..++..++...+++++|
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~s 167 (201)
T smart00487 88 LYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLS 167 (201)
T ss_pred EeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCCccceEEEEe
Confidence 3444332 22233 9999999999998887666677899999999999876456677777877777789999999
Q ss_pred ccCCCh
Q psy6275 202 ATIPNA 207 (391)
Q Consensus 202 AT~~~~ 207 (391)
||+++.
T Consensus 168 aT~~~~ 173 (201)
T smart00487 168 ATPPEE 173 (201)
T ss_pred cCCchh
Confidence 999865
|
|
| >KOG0352|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.1e-19 Score=163.10 Aligned_cols=262 Identities=18% Similarity=0.219 Sum_probs=160.6
Q ss_pred CCCC--CcHHHHHHHHHH-hcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceee
Q psy6275 54 YPFV--LDPFQKEAILCI-ENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLI 130 (391)
Q Consensus 54 ~~~~--~~~~Q~~~i~~i-~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~ 130 (391)
+|+. =++.|.+|+..+ ...+++.+++|||+||+++|.+|.+.. ++..+|+.|..+|+.++.+.+..+.-.+..+
T Consensus 15 FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~---~gITIV~SPLiALIkDQiDHL~~LKVp~~SL 91 (641)
T KOG0352|consen 15 FGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH---GGITIVISPLIALIKDQIDHLKRLKVPCESL 91 (641)
T ss_pred hCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh---CCeEEEehHHHHHHHHHHHHHHhcCCchhHh
Confidence 4553 679999999976 556799999999999999999998765 6689999999999999999988876544444
Q ss_pred eCCcc-------------cCCCCCEEEEcHHHHHHHHh----cCccccCccceEEEecccccCccc--cchhHHHHHHH-
Q psy6275 131 TGDVT-------------INPSSSCLIMTTEILRNMLY----RGSEITREVGWVIFDEIHYMRDKE--RGYVWEETLIL- 190 (391)
Q Consensus 131 ~g~~~-------------~~~~~~I~v~Tp~~l~~~l~----~~~~~l~~~~~lViDE~h~~~~~~--~~~~~~~i~~~- 190 (391)
.+..+ ..++..+++.||+....-.. +....-..+.++|+||||++.+|+ |.+.+-.+=.+
T Consensus 92 NSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LR 171 (641)
T KOG0352|consen 92 NSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLR 171 (641)
T ss_pred cchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcchhhhhhHH
Confidence 33322 23456789999986542211 111223468899999999999886 44443322222
Q ss_pred -hCCCCcEEEEcccCCCh--HHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHh
Q psy6275 191 -LSDNVRFVFLSATIPNA--SQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVL 267 (391)
Q Consensus 191 -~~~~~~~i~~SAT~~~~--~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 267 (391)
.-.....+.+|||.... +++..-|. ..+|+.++....-.. +.+|.+. -..+-.+.+..+..+.
T Consensus 172 S~~~~vpwvALTATA~~~VqEDi~~qL~--L~~PVAiFkTP~FR~---NLFYD~~---------~K~~I~D~~~~LaDF~ 237 (641)
T KOG0352|consen 172 SVCPGVPWVALTATANAKVQEDIAFQLK--LRNPVAIFKTPTFRD---NLFYDNH---------MKSFITDCLTVLADFS 237 (641)
T ss_pred hhCCCCceEEeecccChhHHHHHHHHHh--hcCcHHhccCcchhh---hhhHHHH---------HHHHhhhHhHhHHHHH
Confidence 22468899999998765 55555443 345555543311111 1111000 0011111111111110
Q ss_pred hh-hhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCCh--------HHH
Q psy6275 268 AN-AGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNET--------EEV 338 (391)
Q Consensus 268 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~~--------~~r 338 (391)
.. .+...+. +.-.+.-.+-.||||.||++||++|-.|...|+++. .+|
T Consensus 238 ~~~LG~~~~~-----------------------~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ER 294 (641)
T KOG0352|consen 238 SSNLGKHEKA-----------------------SQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKER 294 (641)
T ss_pred HHhcCChhhh-----------------------hcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchh
Confidence 00 0000000 000011135789999999999999999999888874 567
Q ss_pred HHHHHHH-HHHhhhcchh
Q psy6275 339 KLVDDVF-SNAMDVLSEE 355 (391)
Q Consensus 339 ~~~~~~~-~~~~~~l~~~ 355 (391)
..+.+.- ++.+-++.+|
T Consensus 295 TeVQe~WM~~~~PvI~AT 312 (641)
T KOG0352|consen 295 TEVQEKWMNNEIPVIAAT 312 (641)
T ss_pred HHHHHHHhcCCCCEEEEE
Confidence 7765544 4466666655
|
|
| >KOG0949|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.6e-19 Score=177.35 Aligned_cols=160 Identities=36% Similarity=0.639 Sum_probs=132.5
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh--cCCeEEEEcccHHHHHHHHHHHHHhccc-----
Q psy6275 54 YPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK--QSQRVIYTTPIKALSNQKYREFEEQFKD----- 126 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~--~~~~vlvl~P~~~L~~q~~~~~~~~~~~----- 126 (391)
.+|.|..||.+.+..+..++..+++|||.+|||++..+++-..+. ..+.+++++|+++|++|+...+...+..
T Consensus 508 ~dF~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~r 587 (1330)
T KOG0949|consen 508 HDFCPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLR 587 (1330)
T ss_pred hccCCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCcccc
Confidence 468899999999999999999999999999999998888777664 4688999999999999999888777631
Q ss_pred ----ceeeeCCcccCC-CCCEEEEcHHHHHHHHhc---CccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEE
Q psy6275 127 ----VGLITGDVTINP-SSSCLIMTTEILRNMLYR---GSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFV 198 (391)
Q Consensus 127 ----v~~~~g~~~~~~-~~~I~v~Tp~~l~~~l~~---~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i 198 (391)
.+.++.+...+. +++|+|+-|+.+-+++.. ...+...++++|+||+|.+.....+..++.++...+ +.++
T Consensus 588 g~sl~g~ltqEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li~--CP~L 665 (1330)
T KOG0949|consen 588 GVSLLGDLTQEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLIP--CPFL 665 (1330)
T ss_pred chhhHhhhhHHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhcC--CCee
Confidence 112233333332 689999999999988876 345678999999999999988777888888777765 8899
Q ss_pred EEcccCCChHHHHHHhc
Q psy6275 199 FLSATIPNASQFAQWVS 215 (391)
Q Consensus 199 ~~SAT~~~~~~~~~~l~ 215 (391)
++|||+.|+..+..|+.
T Consensus 666 ~LSATigN~~l~qkWln 682 (1330)
T KOG0949|consen 666 VLSATIGNPNLFQKWLN 682 (1330)
T ss_pred EEecccCCHHHHHHHHH
Confidence 99999999999999987
|
|
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-18 Score=171.87 Aligned_cols=123 Identities=27% Similarity=0.242 Sum_probs=94.9
Q ss_pred EEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc-cceeeeCCccc-----------CCCCCEE
Q psy6275 76 LVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK-DVGLITGDVTI-----------NPSSSCL 143 (391)
Q Consensus 76 li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~-~v~~~~g~~~~-----------~~~~~I~ 143 (391)
++.||||||||.+|+..+...+..+.+++|++|+++|+.|+++.+++.++ .+.+++|+.+. ..+.+|+
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IV 80 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVV 80 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEE
Confidence 47899999999999888878888899999999999999999999998876 67788887653 2357899
Q ss_pred EEcHHHHHHHHhcCccccCccceEEEecccccCccc-cchhH--H--HHHHHhCCCCcEEEEcccCC
Q psy6275 144 IMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKE-RGYVW--E--ETLILLSDNVRFVFLSATIP 205 (391)
Q Consensus 144 v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~-~~~~~--~--~i~~~~~~~~~~i~~SAT~~ 205 (391)
|+|+..+. ..+.+++++|+||+|...... .++.+ . ........+.+++++|||++
T Consensus 81 VGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPs 140 (505)
T TIGR00595 81 IGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPS 140 (505)
T ss_pred ECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 99998663 247799999999999865322 12211 1 12222335789999999964
|
All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK13104 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.8e-19 Score=179.44 Aligned_cols=121 Identities=17% Similarity=0.155 Sum_probs=98.6
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc----ccee
Q psy6275 54 YPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK----DVGL 129 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~----~v~~ 129 (391)
+|..|+++|.-.--.+..|+ +..++||+|||++|.+|++.....+..+.|++|+++||.|.++.+..++. .+++
T Consensus 79 lg~~~ydvQliGg~~Lh~G~--Iaem~TGeGKTL~a~Lpa~~~al~G~~V~VvTpn~yLA~qd~e~m~~l~~~lGLtv~~ 156 (896)
T PRK13104 79 LGLRHFDVQLIGGMVLHEGN--IAEMRTGEGKTLVATLPAYLNAISGRGVHIVTVNDYLAKRDSQWMKPIYEFLGLTVGV 156 (896)
T ss_pred cCCCcchHHHhhhhhhccCc--cccccCCCCchHHHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHhcccCceEEE
Confidence 46667788877666666665 89999999999999999987666777899999999999999999999887 5677
Q ss_pred eeCCcccC-----CCCCEEEEcHHHH-HHHHhcCc-ccc-----CccceEEEecccccC
Q psy6275 130 ITGDVTIN-----PSSSCLIMTTEIL-RNMLYRGS-EIT-----REVGWVIFDEIHYMR 176 (391)
Q Consensus 130 ~~g~~~~~-----~~~~I~v~Tp~~l-~~~l~~~~-~~l-----~~~~~lViDE~h~~~ 176 (391)
++|+.... -.++|+++||+++ ++++.... ..+ +.+.++|+||||.++
T Consensus 157 i~gg~~~~~r~~~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiL 215 (896)
T PRK13104 157 IYPDMSHKEKQEAYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSIL 215 (896)
T ss_pred EeCCCCHHHHHHHhCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhh
Confidence 77776532 2589999999999 88887662 223 589999999999863
|
|
| >PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.1e-18 Score=178.84 Aligned_cols=149 Identities=21% Similarity=0.199 Sum_probs=104.6
Q ss_pred CCCcHHHHHHHHHHh----c-CCcEEEEecCCcchHHHHHHHHHHHHhc--CCeEEEEcccHHHHHHHHHHHHHhcccce
Q psy6275 56 FVLDPFQKEAILCIE----N-NQSVLVSAHTSAGKTVVAEYAIASSLKQ--SQRVIYTTPIKALSNQKYREFEEQFKDVG 128 (391)
Q Consensus 56 ~~~~~~Q~~~i~~i~----~-~~~~li~apTGsGKT~~~~~~~~~~l~~--~~~vlvl~P~~~L~~q~~~~~~~~~~~v~ 128 (391)
+.++++|.+||..+. + .+..+++++||||||.+++..+...+.. ..++|+++|+++|+.|....|........
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~~ 491 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTKIEGD 491 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhcccccc
Confidence 469999999998763 2 4679999999999999866555554433 47999999999999999999988743111
Q ss_pred ----eee-----CCcccCCCCCEEEEcHHHHHHHHhcC-----ccccCccceEEEecccccCc--cc-------------
Q psy6275 129 ----LIT-----GDVTINPSSSCLIMTTEILRNMLYRG-----SEITREVGWVIFDEIHYMRD--KE------------- 179 (391)
Q Consensus 129 ----~~~-----g~~~~~~~~~I~v~Tp~~l~~~l~~~-----~~~l~~~~~lViDE~h~~~~--~~------------- 179 (391)
.+. ++........|+|+|.+.+...+... ...+..+++||+||||+... ..
T Consensus 492 ~~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~~~~~ 571 (1123)
T PRK11448 492 QTFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFRDQLD 571 (1123)
T ss_pred cchhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhccchhhh
Confidence 111 11122345789999999987765321 12457899999999998421 00
Q ss_pred cchhHHHHHHHhCCCCcEEEEcccCCC
Q psy6275 180 RGYVWEETLILLSDNVRFVFLSATIPN 206 (391)
Q Consensus 180 ~~~~~~~i~~~~~~~~~~i~~SAT~~~ 206 (391)
+...+..++..+ +...|+|||||..
T Consensus 572 ~~~~yr~iL~yF--dA~~IGLTATP~r 596 (1123)
T PRK11448 572 YVSKYRRVLDYF--DAVKIGLTATPAL 596 (1123)
T ss_pred HHHHHHHHHhhc--CccEEEEecCCcc
Confidence 013455666654 3678999999963
|
|
| >COG1110 Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2e-18 Score=173.69 Aligned_cols=252 Identities=18% Similarity=0.177 Sum_probs=174.8
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccce-----
Q psy6275 54 YPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVG----- 128 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~----- 128 (391)
.||.|+..|.-+...+..|+++-+.||||.|||+.-++..+.....+.++++++||..|+.|++++++++....+
T Consensus 79 ~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~ 158 (1187)
T COG1110 79 TGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVL 158 (1187)
T ss_pred hCCCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCccee
Confidence 478999999999999999999999999999999876555555556789999999999999999999999986222
Q ss_pred e-eeCCccc-----------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHh-----
Q psy6275 129 L-ITGDVTI-----------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILL----- 191 (391)
Q Consensus 129 ~-~~g~~~~-----------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~----- 191 (391)
+ .|+..+. +.+.+|+|+|...+...+..-.. -+++++++|++|.++..+ ..++.++..+
T Consensus 159 ~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~--~kFdfifVDDVDA~Lkas--kNvDriL~LlGf~eE 234 (1187)
T COG1110 159 VVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSK--LKFDFIFVDDVDAILKAS--KNVDRLLRLLGFSEE 234 (1187)
T ss_pred eeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcc--cCCCEEEEccHHHHHhcc--ccHHHHHHHcCCCHH
Confidence 2 4555332 34689999999877765544322 279999999999886553 3333333222
Q ss_pred ---------------------------------------CCCCcEEEEcccCCCh----HHHHHHhccccCCCeeEeeeC
Q psy6275 192 ---------------------------------------SDNVRFVFLSATIPNA----SQFAQWVSHLHHQPCHVVYTD 228 (391)
Q Consensus 192 ---------------------------------------~~~~~~i~~SAT~~~~----~~~~~~l~~~~~~~~~v~~~~ 228 (391)
.+..+++..|||.... ..+.+.++. ...
T Consensus 235 ~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgF---------evG 305 (1187)
T COG1110 235 VIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGF---------EVG 305 (1187)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCC---------ccC
Confidence 1236789999997543 333444331 111
Q ss_pred CCCc---CceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHc
Q psy6275 229 YRPT---PLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMER 305 (391)
Q Consensus 229 ~~~~---~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 305 (391)
.... ++...++.. .....++++++..
T Consensus 306 ~~~~~LRNIvD~y~~~---------------------------------------------------~~~e~~~elvk~l 334 (1187)
T COG1110 306 SGGEGLRNIVDIYVES---------------------------------------------------ESLEKVVELVKKL 334 (1187)
T ss_pred ccchhhhheeeeeccC---------------------------------------------------ccHHHHHHHHHHh
Confidence 1111 222221110 1123555555555
Q ss_pred CCCcEEEEEcc---hhhHHHHHHHhhccCCCCh---HH-HHHHHHHHHHHhhhcchhhccCcchHhHHHHHHhhhhhcc
Q psy6275 306 NLAPVIVFSFS---KKDCEIYAMQMAKLNFNET---EE-VKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRGIGIHH 377 (391)
Q Consensus 306 ~~~~~iIF~~t---~~~~~~la~~L~~~g~~~~---~~-r~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h 377 (391)
+. ..|||++. ++.++++++.|++.|+++. .. +.....+-++.+++|+.....+ ..|-||||.+|
T Consensus 335 G~-GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~~~~~le~F~~GeidvLVGvAsyY-------G~lVRGlDLP~ 405 (1187)
T COG1110 335 GD-GGLIFVPIDYGREKAEELAEYLRSHGINAELIHAEKEEALEDFEEGEVDVLVGVASYY-------GVLVRGLDLPH 405 (1187)
T ss_pred CC-CeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeeccchhhhhhhccCceeEEEEecccc-------cceeecCCchh
Confidence 53 69999999 9999999999999999986 22 4444444445889998776544 48899999987
|
|
| >KOG0353|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=7e-19 Score=159.38 Aligned_cols=229 Identities=14% Similarity=0.177 Sum_probs=160.8
Q ss_pred CCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCC
Q psy6275 55 PFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGD 133 (391)
Q Consensus 55 ~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~ 133 (391)
..+ ++|.|..+|...+.+++.++..|||.||+++|.+|++-. ++-.||++|..+|++++.-.++.++-....+..+
T Consensus 91 ~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a---dg~alvi~plislmedqil~lkqlgi~as~lnan 167 (695)
T KOG0353|consen 91 HLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA---DGFALVICPLISLMEDQILQLKQLGIDASMLNAN 167 (695)
T ss_pred hHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc---CCceEeechhHHHHHHHHHHHHHhCcchhhccCc
Confidence 344 999999999999999999999999999999999997654 8889999999999999998888887544444333
Q ss_pred cc-------------cCCCCCEEEEcHHHHHH---HHhc--CccccCccceEEEecccccCccc--cchhHH--HHHHHh
Q psy6275 134 VT-------------INPSSSCLIMTTEILRN---MLYR--GSEITREVGWVIFDEIHYMRDKE--RGYVWE--ETLILL 191 (391)
Q Consensus 134 ~~-------------~~~~~~I~v~Tp~~l~~---~l~~--~~~~l~~~~~lViDE~h~~~~~~--~~~~~~--~i~~~~ 191 (391)
.+ .++...+++.||+.+.. ++.+ .......+.++-+||+|+..+|+ |.+.+. .++.+-
T Consensus 168 sske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkrq 247 (695)
T KOG0353|consen 168 SSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQ 247 (695)
T ss_pred ccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHHHHHHHHh
Confidence 32 13345789999998763 1221 22345678899999999998876 333333 233333
Q ss_pred CCCCcEEEEcccCCCh--HHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhh
Q psy6275 192 SDNVRFVFLSATIPNA--SQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLAN 269 (391)
Q Consensus 192 ~~~~~~i~~SAT~~~~--~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 269 (391)
-++..++++|||..+. .+..+.+.. +.++.+......+++.+.+..-|+.+
T Consensus 248 f~~~~iigltatatn~vl~d~k~il~i---e~~~tf~a~fnr~nl~yev~qkp~n~------------------------ 300 (695)
T KOG0353|consen 248 FKGAPIIGLTATATNHVLDDAKDILCI---EAAFTFRAGFNRPNLKYEVRQKPGNE------------------------ 300 (695)
T ss_pred CCCCceeeeehhhhcchhhHHHHHHhH---HhhheeecccCCCCceeEeeeCCCCh------------------------
Confidence 3578999999998764 444444331 33444555555555555554333210
Q ss_pred hhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHH-cCCCcEEEEEcchhhHHHHHHHhhccCCCCh
Q psy6275 270 AGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIME-RNLAPVIVFSFSKKDCEIYAMQMAKLNFNET 335 (391)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~iIF~~t~~~~~~la~~L~~~g~~~~ 335 (391)
++-+..+.+.++. ..++..||||-++++|+.++..|...|+.+.
T Consensus 301 ----------------------dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~ 345 (695)
T KOG0353|consen 301 ----------------------DDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAG 345 (695)
T ss_pred ----------------------HHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCcccc
Confidence 1123344444443 3467899999999999999999999988775
|
|
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.4e-18 Score=177.17 Aligned_cols=277 Identities=20% Similarity=0.194 Sum_probs=201.9
Q ss_pred CCCCcccccccccCCCCccCCCCCcHHHHHHHHHHhc----C--CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcc
Q psy6275 35 PPDLEYQPLAQSKEKPAREYPFVLDPFQKEAILCIEN----N--QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTP 108 (391)
Q Consensus 35 ~~~~~~~~l~~~~~~~~~~~~~~~~~~Q~~~i~~i~~----~--~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P 108 (391)
..+|.+.+-.+....+...++|+-|+-|..||..+.+ + .|-++||.-|.|||.+++-++..++..+++|.|+||
T Consensus 572 ~~G~af~~d~~~q~~F~~~FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~GKQVAvLVP 651 (1139)
T COG1197 572 KKGFAFPPDTEWQEEFEASFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDGKQVAVLVP 651 (1139)
T ss_pred ccCCCCCCChHHHHHHHhcCCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCCCeEEEEcc
Confidence 4577777777778889999999999999999998753 2 578999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhcc----cceeeeCCcc-----------cCCCCCEEEEcHHHHHHHHhcCccccCccceEEEeccc
Q psy6275 109 IKALSNQKYREFEEQFK----DVGLITGDVT-----------INPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIH 173 (391)
Q Consensus 109 ~~~L~~q~~~~~~~~~~----~v~~~~g~~~-----------~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h 173 (391)
|--|+.|.++.|++.+. ++..+.--.+ ...+.+|+|+|..-| +....+++++++||||-|
T Consensus 652 TTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL-----~kdv~FkdLGLlIIDEEq 726 (1139)
T COG1197 652 TTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLL-----SKDVKFKDLGLLIIDEEQ 726 (1139)
T ss_pred cHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhh-----CCCcEEecCCeEEEechh
Confidence 99999999999999998 3333333222 134689999999533 445568899999999999
Q ss_pred ccCccccchhHHHHHHHhCCCCcEEEEcccCC-ChHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecC
Q psy6275 174 YMRDKERGYVWEETLILLSDNVRFVFLSATIP-NASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDD 252 (391)
Q Consensus 174 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~-~~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~ 252 (391)
+ ||.....-++.+..+.-++-||||+= ++- -....+. ++--.+-.+.....+++.|+...+..-
T Consensus 727 R-----FGVk~KEkLK~Lr~~VDvLTLSATPIPRTL-~Msm~Gi--RdlSvI~TPP~~R~pV~T~V~~~d~~~------- 791 (1139)
T COG1197 727 R-----FGVKHKEKLKELRANVDVLTLSATPIPRTL-NMSLSGI--RDLSVIATPPEDRLPVKTFVSEYDDLL------- 791 (1139)
T ss_pred h-----cCccHHHHHHHHhccCcEEEeeCCCCcchH-HHHHhcc--hhhhhccCCCCCCcceEEEEecCChHH-------
Confidence 6 47777788888889999999999963 331 1122111 111122233333446777776433210
Q ss_pred chhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhcc--
Q psy6275 253 NKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKL-- 330 (391)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~-- 330 (391)
.-.++.+.+. .++++..-+|..+..+.++..|+..
T Consensus 792 -----------------------------------------ireAI~REl~--RgGQvfYv~NrV~~Ie~~~~~L~~LVP 828 (1139)
T COG1197 792 -----------------------------------------IREAILRELL--RGGQVFYVHNRVESIEKKAERLRELVP 828 (1139)
T ss_pred -----------------------------------------HHHHHHHHHh--cCCEEEEEecchhhHHHHHHHHHHhCC
Confidence 0113333332 2458999999999999999999875
Q ss_pred --------CCCChHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhccCCCCcccc
Q psy6275 331 --------NFNETEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHGVKPYGLW 385 (391)
Q Consensus 331 --------g~~~~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~~~~~~~r 385 (391)
|-..+.+-+.++..|.+ ..++|++| ..++-||||++|+-=-..|
T Consensus 829 EarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~T-----------TIIEtGIDIPnANTiIIe~ 881 (1139)
T COG1197 829 EARIAVAHGQMRERELEEVMLDFYNGEYDVLVCT-----------TIIETGIDIPNANTIIIER 881 (1139)
T ss_pred ceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEe-----------eeeecCcCCCCCceEEEec
Confidence 43444566666666666 77888888 5899999999887543333
|
|
| >PRK12904 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.79 E-value=3e-18 Score=174.09 Aligned_cols=120 Identities=17% Similarity=0.190 Sum_probs=97.7
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHH-HHHhcCCeEEEEcccHHHHHHHHHHHHHhcc----cce
Q psy6275 54 YPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIA-SSLKQSQRVIYTTPIKALSNQKYREFEEQFK----DVG 128 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~-~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~----~v~ 128 (391)
+|..|+++|.-.--.+..|+ +..+.||+|||+++.+|+. ..+ .+..+-|++|+..||.|.++.+..++. .++
T Consensus 78 lg~~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL-~G~~V~IvTpn~yLA~rd~e~~~~l~~~LGlsv~ 154 (830)
T PRK12904 78 LGMRHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNAL-TGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVG 154 (830)
T ss_pred hCCCCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHH-cCCCEEEEecCHHHHHHHHHHHHHHHhhcCCeEE
Confidence 57778899988876777765 8999999999999999985 555 566788999999999999999999887 567
Q ss_pred eeeCCcccC-----CCCCEEEEcHHHH-HHHHhcCc------cccCccceEEEecccccC
Q psy6275 129 LITGDVTIN-----PSSSCLIMTTEIL-RNMLYRGS------EITREVGWVIFDEIHYMR 176 (391)
Q Consensus 129 ~~~g~~~~~-----~~~~I~v~Tp~~l-~~~l~~~~------~~l~~~~~lViDE~h~~~ 176 (391)
++.|+.+.. -.++|+++||+.+ ++++.... ..++.+.++|+||||.|+
T Consensus 155 ~i~~~~~~~er~~~y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiL 214 (830)
T PRK12904 155 VILSGMSPEERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSIL 214 (830)
T ss_pred EEcCCCCHHHHHHhcCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhhe
Confidence 777766543 2579999999999 78876554 235789999999999863
|
|
| >COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.2e-18 Score=166.47 Aligned_cols=301 Identities=17% Similarity=0.150 Sum_probs=169.1
Q ss_pred CCcHHHHHHHHHH----hcC-CcEEEEecCCcchHHHHHHHHHHHHhc--CCeEEEEcccHHHHHHHHHHHHHhcc--cc
Q psy6275 57 VLDPFQKEAILCI----ENN-QSVLVSAHTSAGKTVVAEYAIASSLKQ--SQRVIYTTPIKALSNQKYREFEEQFK--DV 127 (391)
Q Consensus 57 ~~~~~Q~~~i~~i----~~~-~~~li~apTGsGKT~~~~~~~~~~l~~--~~~vlvl~P~~~L~~q~~~~~~~~~~--~v 127 (391)
.++.+|..||..+ .+| +.+++++.||+|||.+++..+-..++. -.|||+|+-+++|+.|.+..+..... ..
T Consensus 165 ~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~~~ 244 (875)
T COG4096 165 GPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPFGTK 244 (875)
T ss_pred cchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCCccc
Confidence 4999999999865 344 359999999999999876666555544 47999999999999999999999887 22
Q ss_pred eeeeCCcccCCCCCEEEEcHHHHHHHHhcC-----ccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEcc
Q psy6275 128 GLITGDVTINPSSSCLIMTTEILRNMLYRG-----SEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSA 202 (391)
Q Consensus 128 ~~~~g~~~~~~~~~I~v~Tp~~l~~~l~~~-----~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 202 (391)
.....+......++|.++|++++....... +.....+|+||+||||+- .-..+..++..+.. -.+++||
T Consensus 245 ~n~i~~~~~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRg----i~~~~~~I~dYFdA--~~~gLTA 318 (875)
T COG4096 245 MNKIEDKKGDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRG----IYSEWSSILDYFDA--ATQGLTA 318 (875)
T ss_pred eeeeecccCCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhh----HHhhhHHHHHHHHH--HHHhhcc
Confidence 222233333446799999999998776544 233456999999999973 33345567766653 2345599
Q ss_pred cCCChHHHHHHhcccc-CCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhhhccCCCCC
Q psy6275 203 TIPNASQFAQWVSHLH-HQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKG 281 (391)
Q Consensus 203 T~~~~~~~~~~l~~~~-~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (391)
|+.+..+...+ .++ +.|++.+.-...- ...++++.+.-.+...++.+++..+.-..... ..+...-++.+..
T Consensus 319 TP~~~~d~~T~--~~F~g~Pt~~YsleeAV--~DGfLvpy~vi~i~~~~~~~G~~~~~~serek---~~g~~i~~dd~~~ 391 (875)
T COG4096 319 TPKETIDRSTY--GFFNGEPTYAYSLEEAV--EDGFLVPYKVIRIDTDFDLDGWKPDAGSEREK---LQGEAIDEDDQNF 391 (875)
T ss_pred Ccccccccccc--cccCCCcceeecHHHHh--hccccCCCCceEEeeeccccCcCcCccchhhh---hhccccCcccccc
Confidence 99776433332 233 5665554332110 00011100000111111111111111100000 0000010111111
Q ss_pred CCCCCCCCC-Cc---ccHHHHHH-HHHH--cC--CCcEEEEEcchhhHHHHHHHhhccCCCC-----------hHHHHHH
Q psy6275 282 GRKGGPKGG-VQ---TNCFKIVK-MIME--RN--LAPVIVFSFSKKDCEIYAMQMAKLNFNE-----------TEEVKLV 341 (391)
Q Consensus 282 ~~~~~~~~~-~~---~~~~~l~~-~l~~--~~--~~~~iIF~~t~~~~~~la~~L~~~g~~~-----------~~~r~~~ 341 (391)
..+-+-+.. .+ +.+...+. .+.. .+ .+||||||.+..+|+.++..|.+.-..- .++-+.
T Consensus 392 ~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~~q~- 470 (875)
T COG4096 392 EARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQAQA- 470 (875)
T ss_pred cccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccchhhHH-
Confidence 111111111 11 11222222 2322 22 4799999999999999999998741110 011122
Q ss_pred HHHHHHHhhhcchhhccCcchHhHHHHHHhhhhhccC
Q psy6275 342 DDVFSNAMDVLSEEDRKLPQIENILPLLRRGIGIHHG 378 (391)
Q Consensus 342 ~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~ 378 (391)
.++.+.. ....|.|.++.++|.-|||++.+
T Consensus 471 ------~Id~f~~-ke~~P~IaitvdlL~TGiDvpev 500 (875)
T COG4096 471 ------LIDNFID-KEKYPRIAITVDLLTTGVDVPEV 500 (875)
T ss_pred ------HHHHHHh-cCCCCceEEehhhhhcCCCchhe
Confidence 2222222 34578889999999999999753
|
|
| >KOG0951|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-17 Score=169.52 Aligned_cols=260 Identities=23% Similarity=0.396 Sum_probs=190.6
Q ss_pred CcHHHHHHHHHH-hcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc-----cceeee
Q psy6275 58 LDPFQKEAILCI-ENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK-----DVGLIT 131 (391)
Q Consensus 58 ~~~~Q~~~i~~i-~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~-----~v~~~~ 131 (391)
.+++|.++++.+ ..++++++.+|+|||||.++-+++++ -..-.++++++|..+.+..++..|.+.++ .+..++
T Consensus 1144 ~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~-~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ 1222 (1674)
T KOG0951|consen 1144 FNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR-PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLT 1222 (1674)
T ss_pred cCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC-CccceEEEEecchHHHHHHHHHHHHHhhccccCceEEecC
Confidence 789999999976 56789999999999999999888877 23457999999999999988888887776 444577
Q ss_pred CCcccC----CCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchh------HHHHHHHhCCCCcEEEEc
Q psy6275 132 GDVTIN----PSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYV------WEETLILLSDNVRFVFLS 201 (391)
Q Consensus 132 g~~~~~----~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~------~~~i~~~~~~~~~~i~~S 201 (391)
|+...+ ...+|+|+||+++..+ . ..+.+++.|.||.|.+.+ ..|.. ++.+...+.++.+++++|
T Consensus 1223 ge~s~~lkl~~~~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~igg-~~g~v~evi~S~r~ia~q~~k~ir~v~ls 1296 (1674)
T KOG0951|consen 1223 GETSLDLKLLQKGQVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIGG-VYGAVYEVICSMRYIASQLEKKIRVVALS 1296 (1674)
T ss_pred CccccchHHhhhcceEEechhHHHHH-h----hhhhcceEeeehhhhhcc-cCCceEEEEeeHHHHHHHHHhheeEEEee
Confidence 766654 3689999999998655 2 577999999999999873 34443 445556677889999999
Q ss_pred ccCCChHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhhhccCCCCC
Q psy6275 202 ATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKG 281 (391)
Q Consensus 202 AT~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (391)
..+.+..++ ++ .....++.+.++.||.|++.++.- +....+...+..|-+
T Consensus 1297 ~~lana~d~---ig-~s~~~v~Nf~p~~R~~Pl~i~i~~--------------~~~~~~~~~~~am~~------------ 1346 (1674)
T KOG0951|consen 1297 SSLANARDL---IG-ASSSGVFNFSPSVRPVPLEIHIQS--------------VDISHFESRMLAMTK------------ 1346 (1674)
T ss_pred hhhccchhh---cc-ccccceeecCcccCCCceeEEEEE--------------eccchhHHHHHHhhh------------
Confidence 999998877 33 345678889999999999887763 334455555555543
Q ss_pred CCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhcchhhccCcc
Q psy6275 282 GRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLPQ 361 (391)
Q Consensus 282 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~~~~r~~~~~~~~~~~~~l~~~d~~~~~ 361 (391)
.....+.+.. . .+++++||+++|++|..+|..|-...+.. +...+.....+ .|
T Consensus 1347 -----------~~~~ai~~~a-~-~~k~~~vf~p~rk~~~~~a~~~~~~s~~~--~~~~l~~~~e~-------~~----- 1399 (1674)
T KOG0951|consen 1347 -----------PTYTAIVRHA-G-NRKPAIVFLPTRKHARLVAVDLVTFSHAD--EPDYLLSELEE-------CD----- 1399 (1674)
T ss_pred -----------hHHHHHHHHh-c-CCCCeEEEeccchhhhhhhhccchhhccC--cHHHHHHHHhc-------ch-----
Confidence 1122333322 2 34699999999999999999998776655 33232222222 11
Q ss_pred hHhHHHHHHhhhhhccCCCCccc
Q psy6275 362 IENILPLLRRGIGIHHGVKPYGL 384 (391)
Q Consensus 362 ~~~~~~~l~~GI~~~h~~~~~~~ 384 (391)
-.+.+.|+.||+ |.||++.+
T Consensus 1400 -~~l~e~l~~gvg--~e~~s~~d 1419 (1674)
T KOG0951|consen 1400 -ETLRESLKHGVG--HEGLSSND 1419 (1674)
T ss_pred -Hhhhhccccccc--ccccCcch
Confidence 245678899999 88887543
|
|
| >KOG0952|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.8e-19 Score=179.69 Aligned_cols=277 Identities=25% Similarity=0.385 Sum_probs=198.2
Q ss_pred CcHHHHHHHHHH-hcCCcEEEEecCCcchHHHHHHHHHHHHhc--CCeEEEEcccHHHHHHHHHHHHHhcc----cceee
Q psy6275 58 LDPFQKEAILCI-ENNQSVLVSAHTSAGKTVVAEYAIASSLKQ--SQRVIYTTPIKALSNQKYREFEEQFK----DVGLI 130 (391)
Q Consensus 58 ~~~~Q~~~i~~i-~~~~~~li~apTGsGKT~~~~~~~~~~l~~--~~~vlvl~P~~~L~~q~~~~~~~~~~----~v~~~ 130 (391)
+.|.|.+.+..+ .-+.++++-+|||+|||.++..++...+.. +.+++|++|.++|+..-.+.+..... ++.-+
T Consensus 928 fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~~~g~k~ie~ 1007 (1230)
T KOG0952|consen 928 FNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDELPGIKVIEL 1007 (1230)
T ss_pred cCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcccccchhhhcccCCceeEec
Confidence 666777776644 346789999999999999999998887754 57999999999999998888887765 34456
Q ss_pred eCCcccC----CCCCEEEEcHHHHHHHHh--cCccccCccceEEEecccccCccccchhHHHHHHH-------hCCCCcE
Q psy6275 131 TGDVTIN----PSSSCLIMTTEILRNMLY--RGSEITREVGWVIFDEIHYMRDKERGYVWEETLIL-------LSDNVRF 197 (391)
Q Consensus 131 ~g~~~~~----~~~~I~v~Tp~~l~~~l~--~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~-------~~~~~~~ 197 (391)
+|+...+ ..++++|+||++...... ....++++++++|+||.|.+.+ ++++.++.+... .+...++
T Consensus 1008 tgd~~pd~~~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~-~rgPVle~ivsr~n~~s~~t~~~vr~ 1086 (1230)
T KOG0952|consen 1008 TGDVTPDVKAVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGE-DRGPVLEVIVSRMNYISSQTEEPVRY 1086 (1230)
T ss_pred cCccCCChhheecCceEEcccccccCccccccchhhhccccceeecccccccC-CCcceEEEEeeccccCccccCcchhh
Confidence 6766654 357899999999887665 5677899999999999998755 577776655443 2356888
Q ss_pred EEEcccCCChHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhhhccC
Q psy6275 198 VFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAG 277 (391)
Q Consensus 198 i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (391)
+++|..+.++.++++|++.... +.+.+..+|+|++.++-..++ ..+-..+..|+++..
T Consensus 1087 ~glsta~~na~dla~wl~~~~~---~nf~~svrpvp~~~~i~gfp~--------------~~~cprm~smnkpa~----- 1144 (1230)
T KOG0952|consen 1087 LGLSTALANANDLADWLNIKDM---YNFRPSVRPVPLEVHIDGFPG--------------QHYCPRMMSMNKPAF----- 1144 (1230)
T ss_pred hhHhhhhhccHHHHHHhCCCCc---CCCCcccccCCceEeecCCCc--------------hhcchhhhhcccHHH-----
Confidence 9999888899999999985432 667777888888888765443 122223333332111
Q ss_pred CCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCChHHHHHH---HHHHHHHhhhcch
Q psy6275 278 DHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNETEEVKLV---DDVFSNAMDVLSE 354 (391)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~~~~r~~~---~~~~~~~~~~l~~ 354 (391)
+.+ ....+..++|||+.++.+...-|..|..........++.. +..++..+....+
T Consensus 1145 -------------------qai--k~~sp~~p~lifv~srrqtrlta~~li~~~~~~~~p~~fl~~de~e~e~~~~~~~d 1203 (1230)
T KOG0952|consen 1145 -------------------QAI--KTHSPIKPVLIFVSSRRQTRLTALDLIASCATEDNPKQFLNMDELELEIIMSKVRD 1203 (1230)
T ss_pred -------------------HHH--hcCCCCCceEEEeecccccccchHhHHhhccCCCCchhccCCCHHHHHHHHHHhcc
Confidence 111 1234567999999999988887777766544443333322 2333333333343
Q ss_pred hhccCcchHhHHHHHHhhhhhccCCCCccccc
Q psy6275 355 EDRKLPQIENILPLLRRGIGIHHGVKPYGLWQ 386 (391)
Q Consensus 355 ~d~~~~~~~~~~~~l~~GI~~~h~~~~~~~r~ 386 (391)
+ .+.-.+.+||+.||+|+.+.+|+
T Consensus 1204 ~--------~Lk~tl~Fgi~lhhagl~~~dr~ 1227 (1230)
T KOG0952|consen 1204 T--------NLKLTLPFGIGLHHAGLIENDRK 1227 (1230)
T ss_pred c--------chhhhhhhhhhhhhhhccccccc
Confidence 3 46678999999999999999886
|
|
| >KOG0922|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-16 Score=155.05 Aligned_cols=217 Identities=16% Similarity=0.292 Sum_probs=157.3
Q ss_pred CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHH-HHhcCCeEEEEcccHHHHHHHHHHHHHhcc-----cceee-
Q psy6275 58 LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIAS-SLKQSQRVIYTTPIKALSNQKYREFEEQFK-----DVGLI- 130 (391)
Q Consensus 58 ~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~-~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~-----~v~~~- 130 (391)
...+-.+.+..+.+++.+++.|+||||||+.....+.+ .....+++.|..|.|--+..+++++..-.+ .||..
T Consensus 52 I~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~I 131 (674)
T KOG0922|consen 52 IYKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTI 131 (674)
T ss_pred HHHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHHhCCCcCceeeeEE
Confidence 44555667778888999999999999999975444433 334556799999999888888888777665 34432
Q ss_pred eCCcccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHh------CCCCcEEEEcccC
Q psy6275 131 TGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILL------SDNVRFVFLSATI 204 (391)
Q Consensus 131 ~g~~~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~------~~~~~~i~~SAT~ 204 (391)
.-+.....++.|.+.|.|.|++.+...+. +++++++|+||||+ +....+.++..+ +.+.++|+||||+
T Consensus 132 RFed~ts~~TrikymTDG~LLRE~l~Dp~-LskYsvIIlDEAHE-----Rsl~TDiLlGlLKki~~~R~~LklIimSATl 205 (674)
T KOG0922|consen 132 RFEDSTSKDTRIKYMTDGMLLREILKDPL-LSKYSVIILDEAHE-----RSLHTDILLGLLKKILKKRPDLKLIIMSATL 205 (674)
T ss_pred EecccCCCceeEEEecchHHHHHHhcCCc-cccccEEEEechhh-----hhhHHHHHHHHHHHHHhcCCCceEEEEeeee
Confidence 22333345789999999999988876654 88999999999995 233333333322 3568999999999
Q ss_pred CChHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhhhccCCCCCCCC
Q psy6275 205 PNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRK 284 (391)
Q Consensus 205 ~~~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (391)
+.+.|.+|+.. +.++...+|..|++.++...+.. +|.
T Consensus 206 -da~kfS~yF~~-----a~i~~i~GR~fPVei~y~~~p~~---------dYv---------------------------- 242 (674)
T KOG0922|consen 206 -DAEKFSEYFNN-----APILTIPGRTFPVEILYLKEPTA---------DYV---------------------------- 242 (674)
T ss_pred -cHHHHHHHhcC-----CceEeecCCCCceeEEeccCCch---------hhH----------------------------
Confidence 67778888753 56777889999999888754322 111
Q ss_pred CCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhcc
Q psy6275 285 GGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKL 330 (391)
Q Consensus 285 ~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~ 330 (391)
++.+..++++....+.+-+|||.+.+++.+.+++.|.+.
T Consensus 243 -------~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~ 281 (674)
T KOG0922|consen 243 -------DAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRER 281 (674)
T ss_pred -------HHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHH
Confidence 123334555555566678999999999999999999874
|
|
| >COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.5e-16 Score=162.69 Aligned_cols=217 Identities=20% Similarity=0.290 Sum_probs=163.8
Q ss_pred CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHH-hcCCeEEEEcccHHHHHHHHHHHHHhcc-c----cee-e
Q psy6275 58 LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSL-KQSQRVIYTTPIKALSNQKYREFEEQFK-D----VGL-I 130 (391)
Q Consensus 58 ~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l-~~~~~vlvl~P~~~L~~q~~~~~~~~~~-~----v~~-~ 130 (391)
.+....+.+.++.+++.++++||||||||+.....+++.. ..++.+.++-|.|--|..++.++.+..+ + ||+ +
T Consensus 51 v~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~i 130 (845)
T COG1643 51 VTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSI 130 (845)
T ss_pred cHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEE
Confidence 5566777778888899999999999999998777766654 4467999999999888888888887776 3 444 4
Q ss_pred eCCcccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHH-------HHHHHhCCCCcEEEEccc
Q psy6275 131 TGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWE-------ETLILLSDNVRFVFLSAT 203 (391)
Q Consensus 131 ~g~~~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~-------~i~~~~~~~~~~i~~SAT 203 (391)
..+.....++.|-++|.|.|++.+..... ++.++++|+||+|+= ....+ .++...+.+.++|.||||
T Consensus 131 Rfe~~~s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHER-----Sl~tDilLgllk~~~~~rr~DLKiIimSAT 204 (845)
T COG1643 131 RFESKVSPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHER-----SLNTDILLGLLKDLLARRRDDLKLIIMSAT 204 (845)
T ss_pred EeeccCCCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhh-----hHHHHHHHHHHHHHHhhcCCCceEEEEecc
Confidence 44555677889999999999999887665 889999999999962 22322 233344557999999999
Q ss_pred CCChHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhhhccCCCCCCC
Q psy6275 204 IPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGR 283 (391)
Q Consensus 204 ~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (391)
+ +.+.|+.+++. +.++...++..|++.++-.....+ +. .
T Consensus 205 l-d~~rfs~~f~~-----apvi~i~GR~fPVei~Y~~~~~~d---------~~---l----------------------- 243 (845)
T COG1643 205 L-DAERFSAYFGN-----APVIEIEGRTYPVEIRYLPEAEAD---------YI---L----------------------- 243 (845)
T ss_pred c-CHHHHHHHcCC-----CCEEEecCCccceEEEecCCCCcc---------hh---H-----------------------
Confidence 9 67778888753 567888899999998885443221 10 0
Q ss_pred CCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhc
Q psy6275 284 KGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAK 329 (391)
Q Consensus 284 ~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~ 329 (391)
.+.+...+......+.+.+|||.+...+.+.+++.|.+
T Consensus 244 --------~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~ 281 (845)
T COG1643 244 --------LDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEK 281 (845)
T ss_pred --------HHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHh
Confidence 12233445555555567999999999999999999987
|
|
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.6e-16 Score=137.28 Aligned_cols=142 Identities=25% Similarity=0.297 Sum_probs=101.4
Q ss_pred CCCcHHHHHHHHHHhc-------CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccce
Q psy6275 56 FVLDPFQKEAILCIEN-------NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVG 128 (391)
Q Consensus 56 ~~~~~~Q~~~i~~i~~-------~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~ 128 (391)
|+|+++|.+++..+.+ .+++++.+|||+|||.+++..+.+... ++++++|+..|+.|+.+.+..+.....
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~---~~l~~~p~~~l~~Q~~~~~~~~~~~~~ 78 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR---KVLIVAPNISLLEQWYDEFDDFGSEKY 78 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC---EEEEEESSHHHHHHHHHHHHHHSTTSE
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc---ceeEecCHHHHHHHHHHHHHHhhhhhh
Confidence 4689999999998752 589999999999999998876666654 999999999999999999976665211
Q ss_pred eee---------CCc-------------ccCCCCCEEEEcHHHHHHHHhcC-----------ccccCccceEEEeccccc
Q psy6275 129 LIT---------GDV-------------TINPSSSCLIMTTEILRNMLYRG-----------SEITREVGWVIFDEIHYM 175 (391)
Q Consensus 129 ~~~---------g~~-------------~~~~~~~I~v~Tp~~l~~~l~~~-----------~~~l~~~~~lViDE~h~~ 175 (391)
... +.. ....+.++++.|.+.+....... .......+++|+||||++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH~~ 158 (184)
T PF04851_consen 79 NFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAHHY 158 (184)
T ss_dssp EEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGGCT
T ss_pred hhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhhhc
Confidence 110 000 01235689999999988765431 123457889999999987
Q ss_pred CccccchhHHHHHHHhCCCCcEEEEcccCC
Q psy6275 176 RDKERGYVWEETLILLSDNVRFVFLSATIP 205 (391)
Q Consensus 176 ~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 205 (391)
.... .++.++. .....+++||||+.
T Consensus 159 ~~~~---~~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 159 PSDS---SYREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp HHHH---HHHHHHH--SSCCEEEEEESS-S
T ss_pred CCHH---HHHHHHc--CCCCeEEEEEeCcc
Confidence 4321 1555655 45678999999985
|
1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B .... |
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-15 Score=161.33 Aligned_cols=73 Identities=19% Similarity=0.121 Sum_probs=62.3
Q ss_pred ccCCCCccCCCCCcHHHHHHHH----HHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHH
Q psy6275 46 SKEKPAREYPFVLDPFQKEAIL----CIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYR 118 (391)
Q Consensus 46 ~~~~~~~~~~~~~~~~Q~~~i~----~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~ 118 (391)
.....+...||++++.|.+.+. .+.+++++++.||||+|||++|++|++.....+.+++|.+||++|..|+..
T Consensus 234 ~~~~~~~~~~~~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~~~~~vvi~t~t~~Lq~Ql~~ 310 (850)
T TIGR01407 234 LFSKNIDRLGLEYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAITEKPVVISTNTKVLQSQLLE 310 (850)
T ss_pred HHHHhhhhcCCccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHH
Confidence 3445666689999999998766 456788999999999999999999998876667899999999999999865
|
This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli. |
| >PRK12899 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.69 E-value=1e-16 Score=163.10 Aligned_cols=124 Identities=15% Similarity=0.184 Sum_probs=104.6
Q ss_pred cCCCC-C---cHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc---
Q psy6275 53 EYPFV-L---DPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK--- 125 (391)
Q Consensus 53 ~~~~~-~---~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~--- 125 (391)
..||. | +|+|.++++.+..++++++.++||+|||++|.+|++..+..+..++|++|+++|+.|..+.+..+..
T Consensus 84 ~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~~v~IVTpTrELA~Qdae~m~~L~k~lG 163 (970)
T PRK12899 84 VSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTGKPVHLVTVNDYLAQRDCEWVGSVLRWLG 163 (970)
T ss_pred cccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHHHHHHHHHhhcC
Confidence 56775 6 9999999999999999999999999999999999997765566699999999999999999998876
Q ss_pred -cceeeeCCcccCC-----CCCEEEEcHHHH-HHHHhcCccccC-------ccceEEEecccccC
Q psy6275 126 -DVGLITGDVTINP-----SSSCLIMTTEIL-RNMLYRGSEITR-------EVGWVIFDEIHYMR 176 (391)
Q Consensus 126 -~v~~~~g~~~~~~-----~~~I~v~Tp~~l-~~~l~~~~~~l~-------~~~~lViDE~h~~~ 176 (391)
.++.+.|+..... .++|+|+||+++ ++++..+...++ .+.++|+||||.|+
T Consensus 164 LsV~~i~GG~~~~eq~~~y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsmL 228 (970)
T PRK12899 164 LTTGVLVSGSPLEKRKEIYQCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSIL 228 (970)
T ss_pred CeEEEEeCCCCHHHHHHHcCCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhhh
Confidence 5666777766432 589999999999 998887644443 56899999999874
|
|
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.2e-16 Score=127.02 Aligned_cols=132 Identities=27% Similarity=0.375 Sum_probs=101.1
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHh--cCCeEEEEcccHHHHHHHHHHHHHhcc---cceeeeCCccc-------CCCC
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLK--QSQRVIYTTPIKALSNQKYREFEEQFK---DVGLITGDVTI-------NPSS 140 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~--~~~~vlvl~P~~~L~~q~~~~~~~~~~---~v~~~~g~~~~-------~~~~ 140 (391)
+++++.+|||+|||.+++..+..... ...+++|++|++.++.|+...+..... .+...++.... ....
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQEKLLSGKT 80 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHHHHhcCCC
Confidence 47899999999999999888877764 468999999999999999999888873 45555554432 3467
Q ss_pred CEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEcccC
Q psy6275 141 SCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATI 204 (391)
Q Consensus 141 ~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 204 (391)
+|+++|++.+.............++++|+||+|.+....................+++++|||+
T Consensus 81 ~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 81 DIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred CEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 8999999999887766554566899999999999865433332212333445678999999996
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. |
| >COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.1e-16 Score=158.83 Aligned_cols=282 Identities=17% Similarity=0.148 Sum_probs=165.2
Q ss_pred CcHHHHHHHHHHhc---CC-cEEEEecCCcchHHHHHHHHHHHHhc----CCeEEEEcccHHHHHHHHHHHHHhcccc--
Q psy6275 58 LDPFQKEAILCIEN---NQ-SVLVSAHTSAGKTVVAEYAIASSLKQ----SQRVIYTTPIKALSNQKYREFEEQFKDV-- 127 (391)
Q Consensus 58 ~~~~Q~~~i~~i~~---~~-~~li~apTGsGKT~~~~~~~~~~l~~----~~~vlvl~P~~~L~~q~~~~~~~~~~~v-- 127 (391)
..+.|..++..+.+ .. .+++.||||+|||.+.+.++...+.. ..+++++.|++.+++++++++...++.-
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~~ 275 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFSV 275 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhccccc
Confidence 58999999987643 34 78999999999999998888877655 6899999999999999999999887622
Q ss_pred -ee-eeCCcccC----C-----------------CCCEEEEcHHHHHHHHhcCcccc----CccceEEEecccccCcccc
Q psy6275 128 -GL-ITGDVTIN----P-----------------SSSCLIMTTEILRNMLYRGSEIT----REVGWVIFDEIHYMRDKER 180 (391)
Q Consensus 128 -~~-~~g~~~~~----~-----------------~~~I~v~Tp~~l~~~l~~~~~~l----~~~~~lViDE~h~~~~~~~ 180 (391)
+. .+|..... . -..+.++||............+. =..+++|+||+|.+.+...
T Consensus 276 ~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~~~ 355 (733)
T COG1203 276 IGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADETM 355 (733)
T ss_pred ccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcccch
Confidence 11 23332210 0 11345555554443222211111 1346899999999876532
Q ss_pred chhHHHHHHH-hCCCCcEEEEcccCCCh--HHHHHHhccccCCCeeEeeeCCCCcC-ceEeeccCCCCCeeeeecCchhh
Q psy6275 181 GYVWEETLIL-LSDNVRFVFLSATIPNA--SQFAQWVSHLHHQPCHVVYTDYRPTP-LQHYLFPNGGDGIHLIVDDNKFK 256 (391)
Q Consensus 181 ~~~~~~i~~~-~~~~~~~i~~SAT~~~~--~~~~~~l~~~~~~~~~v~~~~~~~~~-i~~~~~~~~~~~~~~~v~~~~~~ 256 (391)
...+..++.. ...+..+++||||+|.. +.+...+. ....+..... ..+ .....+.... . + .+.
T Consensus 356 ~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~----~~~~~~~~~~-~~~~~~e~~~~~~~---~--~---~~~ 422 (733)
T COG1203 356 LAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALG----KGREVVENAK-FCPKEDEPGLKRKE---R--V---DVE 422 (733)
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHh----cccceecccc-cccccccccccccc---c--h---hhh
Confidence 2233333333 34578999999999876 33333332 1111111100 000 0000000000 0 0 000
Q ss_pred hhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCC--
Q psy6275 257 EHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNE-- 334 (391)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~-- 334 (391)
. ..+ . ........ .-..+++++|-|||+..|.++...|+..+...
T Consensus 423 ~-~~~---~---------------------------~~~~~~~~--~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~L 469 (733)
T COG1203 423 D-GPQ---E---------------------------ELIELISE--EVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLL 469 (733)
T ss_pred h-hhh---H---------------------------hhhhcchh--hhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEE
Confidence 0 000 0 00001111 12346799999999999999999999887711
Q ss_pred ------hHHHHHHHHHHHHHhhhcchhhccCcchHhHHHHHHhhhhhc-------cCCCCccccccccCC
Q psy6275 335 ------TEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRGIGIH-------HGVKPYGLWQSKKIN 391 (391)
Q Consensus 335 ------~~~r~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~GI~~~-------h~~~~~~~r~~~~~~ 391 (391)
...|....+.++... ...-..+.+.|++++.|+|+- .+.+++-++.+||||
T Consensus 470 lHSRf~~~dR~~ke~~l~~~~------~~~~~~IvVaTQVIEagvDidfd~mITe~aPidSLIQR~GRv~ 533 (733)
T COG1203 470 LHSRFTLKDREEKERELKKLF------KQNEGFIVVATQVIEAGVDIDFDVLITELAPIDSLIQRAGRVN 533 (733)
T ss_pred EecccchhhHHHHHHHHHHHH------hccCCeEEEEeeEEEEEeccccCeeeecCCCHHHHHHHHHHHh
Confidence 133444433333211 112223456668999999995 588889999999987
|
|
| >PRK04914 ATP-dependent helicase HepA; Validated | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.5e-15 Score=154.97 Aligned_cols=151 Identities=20% Similarity=0.184 Sum_probs=101.9
Q ss_pred CCCCcHHHHHHHHHHhc--CCcEEEEecCCcchHHHHHHHHHHHHhcC--CeEEEEcccHHHHHHHHHHHHHhcc-ccee
Q psy6275 55 PFVLDPFQKEAILCIEN--NQSVLVSAHTSAGKTVVAEYAIASSLKQS--QRVIYTTPIKALSNQKYREFEEQFK-DVGL 129 (391)
Q Consensus 55 ~~~~~~~Q~~~i~~i~~--~~~~li~apTGsGKT~~~~~~~~~~l~~~--~~vlvl~P~~~L~~q~~~~~~~~~~-~v~~ 129 (391)
...|.|+|..+...+.. ...+++.-.+|.|||..+.+.+...+..+ .++||++|. .|..||..++.+.+. ...+
T Consensus 150 ~~~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g~~~rvLIVvP~-sL~~QW~~El~~kF~l~~~i 228 (956)
T PRK04914 150 RASLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTGRAERVLILVPE-TLQHQWLVEMLRRFNLRFSL 228 (956)
T ss_pred CCCCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCCCCcEEEEcCH-HHHHHHHHHHHHHhCCCeEE
Confidence 34699999999877643 34789999999999998866665554443 699999997 899999999987765 4444
Q ss_pred eeCCc---------ccCCCCCEEEEcHHHHHHHHh-cCccccCccceEEEecccccCcc--ccchhHHHHHHHhCCCCcE
Q psy6275 130 ITGDV---------TINPSSSCLIMTTEILRNMLY-RGSEITREVGWVIFDEIHYMRDK--ERGYVWEETLILLSDNVRF 197 (391)
Q Consensus 130 ~~g~~---------~~~~~~~I~v~Tp~~l~~~l~-~~~~~l~~~~~lViDE~h~~~~~--~~~~~~~~i~~~~~~~~~~ 197 (391)
+.++. ......+++|++.+.+...-. .....-..++++|+||||++... .....+..+.........+
T Consensus 229 ~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~~~~~~ 308 (956)
T PRK04914 229 FDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAEVIPGV 308 (956)
T ss_pred EcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhhccCCE
Confidence 43322 111246799999987764110 01111237899999999998521 1122233333333344678
Q ss_pred EEEcccCCC
Q psy6275 198 VFLSATIPN 206 (391)
Q Consensus 198 i~~SAT~~~ 206 (391)
+++||||-.
T Consensus 309 LLLTATP~q 317 (956)
T PRK04914 309 LLLTATPEQ 317 (956)
T ss_pred EEEEcCccc
Confidence 999999974
|
|
| >PRK13107 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.5e-16 Score=155.85 Aligned_cols=121 Identities=15% Similarity=0.147 Sum_probs=95.1
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc----ccee
Q psy6275 54 YPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK----DVGL 129 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~----~v~~ 129 (391)
+|..|+++|.-.--.+..|+ +..++||.|||+++.+|++.....+..|.|++|+..||.+-.+.+..++. .++.
T Consensus 79 lgm~~ydVQliGgl~L~~G~--IaEm~TGEGKTL~a~lp~~l~al~g~~VhIvT~ndyLA~RD~e~m~~l~~~lGlsv~~ 156 (908)
T PRK13107 79 FEMRHFDVQLLGGMVLDSNR--IAEMRTGEGKTLTATLPAYLNALTGKGVHVITVNDYLARRDAENNRPLFEFLGLTVGI 156 (908)
T ss_pred hCCCcCchHHhcchHhcCCc--cccccCCCCchHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 46667788876655555555 89999999999999999887767777899999999999999999888877 5555
Q ss_pred eeCCcccC-----CCCCEEEEcHHHH-HHHHhcC-ccc-----cCccceEEEecccccC
Q psy6275 130 ITGDVTIN-----PSSSCLIMTTEIL-RNMLYRG-SEI-----TREVGWVIFDEIHYMR 176 (391)
Q Consensus 130 ~~g~~~~~-----~~~~I~v~Tp~~l-~~~l~~~-~~~-----l~~~~~lViDE~h~~~ 176 (391)
+.++.... -.++|+++||+.+ ++++..+ ... .+.+.++|+||+|.++
T Consensus 157 i~~~~~~~~r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiL 215 (908)
T PRK13107 157 NVAGLGQQEKKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSIL 215 (908)
T ss_pred ecCCCCHHHHHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhc
Confidence 66655432 1589999999998 7777655 212 2688999999999864
|
|
| >COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.3e-14 Score=144.66 Aligned_cols=142 Identities=27% Similarity=0.287 Sum_probs=114.1
Q ss_pred CCcHHHHHHHHHHhcC----CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc-cceeee
Q psy6275 57 VLDPFQKEAILCIENN----QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK-DVGLIT 131 (391)
Q Consensus 57 ~~~~~Q~~~i~~i~~~----~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~-~v~~~~ 131 (391)
.+++-|..++..+... ...++.|-||||||.+|+-.+-..+.+|.++|+++|..+|..|+.++|+..++ ++.++|
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlH 277 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLH 277 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhc
Confidence 4889999999988654 67999999999999999999999999999999999999999999999999998 888888
Q ss_pred CCccc-----------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccC--c-cccchhHHH--HHHHhCCCC
Q psy6275 132 GDVTI-----------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMR--D-KERGYVWEE--TLILLSDNV 195 (391)
Q Consensus 132 g~~~~-----------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~--~-~~~~~~~~~--i~~~~~~~~ 195 (391)
++.+. +.+..|+|+|-.-++ .++++++++|+||-|.-. + .+.....+. +.+.-..++
T Consensus 278 S~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF-------~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~~~~ 350 (730)
T COG1198 278 SGLSPGERYRVWRRARRGEARVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKKENA 350 (730)
T ss_pred ccCChHHHHHHHHHHhcCCceEEEEechhhc-------CchhhccEEEEeccccccccCCcCCCcCHHHHHHHHHHHhCC
Confidence 87763 346789999986543 357899999999999642 1 111222222 222333579
Q ss_pred cEEEEcccCC
Q psy6275 196 RFVFLSATIP 205 (391)
Q Consensus 196 ~~i~~SAT~~ 205 (391)
++|+-|||++
T Consensus 351 pvvLgSATPS 360 (730)
T COG1198 351 PVVLGSATPS 360 (730)
T ss_pred CEEEecCCCC
Confidence 9999999985
|
|
| >KOG0926|consensus | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.9e-14 Score=141.61 Aligned_cols=214 Identities=18% Similarity=0.215 Sum_probs=144.8
Q ss_pred HHHHHhcCCcEEEEecCCcchHHHHHHHHHHH-Hh-----cCCeEEEEcccHHHHHHHHHHHHHhcc----ccee-eeCC
Q psy6275 65 AILCIENNQSVLVSAHTSAGKTVVAEYAIASS-LK-----QSQRVIYTTPIKALSNQKYREFEEQFK----DVGL-ITGD 133 (391)
Q Consensus 65 ~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~-l~-----~~~~vlvl~P~~~L~~q~~~~~~~~~~----~v~~-~~g~ 133 (391)
...+|..+.-++|+|.||||||+.....+..+ .. .++-+=|..|.|..+..+++++..-++ .|+. +.-+
T Consensus 264 IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqIRfd 343 (1172)
T KOG0926|consen 264 IMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQIRFD 343 (1172)
T ss_pred HHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEEEEec
Confidence 34456677789999999999999754444332 21 245677888999877777766655443 4544 3345
Q ss_pred cccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHh----------C------CCCcE
Q psy6275 134 VTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILL----------S------DNVRF 197 (391)
Q Consensus 134 ~~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~----------~------~~~~~ 197 (391)
....+.+.|.++|.|.|+.-+.+.. .|..++.+|+||||.- ....+.++..+ . ...++
T Consensus 344 ~ti~e~T~IkFMTDGVLLrEi~~Df-lL~kYSvIIlDEAHER-----SvnTDILiGmLSRiV~LR~k~~ke~~~~kpLKL 417 (1172)
T KOG0926|consen 344 GTIGEDTSIKFMTDGVLLREIENDF-LLTKYSVIILDEAHER-----SVNTDILIGMLSRIVPLRQKYYKEQCQIKPLKL 417 (1172)
T ss_pred cccCCCceeEEecchHHHHHHHHhH-hhhhceeEEechhhhc-----cchHHHHHHHHHHHHHHHHHHhhhhcccCceeE
Confidence 5667789999999999998887655 3789999999999963 22222222211 1 25789
Q ss_pred EEEcccCCChHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhhhccC
Q psy6275 198 VFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAG 277 (391)
Q Consensus 198 i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (391)
|+||||+. ..+|.+.- .++..+..++..+.|..|+..++-.-..+ +|.
T Consensus 418 IIMSATLR-VsDFtenk-~LFpi~pPlikVdARQfPVsIHF~krT~~---------DYi--------------------- 465 (1172)
T KOG0926|consen 418 IIMSATLR-VSDFTENK-RLFPIPPPLIKVDARQFPVSIHFNKRTPD---------DYI--------------------- 465 (1172)
T ss_pred EEEeeeEE-ecccccCc-eecCCCCceeeeecccCceEEEeccCCCc---------hHH---------------------
Confidence 99999994 33454322 23344445777888888888777532211 111
Q ss_pred CCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhcc
Q psy6275 278 DHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKL 330 (391)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~ 330 (391)
.+......++.+.-+.+.+|||+....+++.|++.|++.
T Consensus 466 --------------~eAfrKtc~IH~kLP~G~ILVFvTGQqEV~qL~~kLRK~ 504 (1172)
T KOG0926|consen 466 --------------AEAFRKTCKIHKKLPPGGILVFVTGQQEVDQLCEKLRKR 504 (1172)
T ss_pred --------------HHHHHHHHHHhhcCCCCcEEEEEeChHHHHHHHHHHHhh
Confidence 122335555666667778999999999999999999874
|
|
| >PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.5e-15 Score=117.95 Aligned_cols=134 Identities=19% Similarity=0.238 Sum_probs=85.4
Q ss_pred cCCcEEEEecCCcchHHHH-HHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVA-EYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEI 149 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~-~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~ 149 (391)
+|+-.++-.+||+|||.-. ...+.+.++.+.|+|||.|||.++.++.+.++.....+....-.........|-++|+..
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~~~~~~~t~~~~~~~~g~~~i~vMc~at 82 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKGLPVRFHTNARMRTHFGSSIIDVMCHAT 82 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTTSSEEEESTTSS----SSSSEEEEEHHH
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHHHHHHHHHHhcCCcccCceeeeccccCCCcccccccHH
Confidence 4566789999999999964 445566888999999999999999999988875532221111111223456789999999
Q ss_pred HHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHh--CCCCcEEEEcccCCCh
Q psy6275 150 LRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILL--SDNVRFVFLSATIPNA 207 (391)
Q Consensus 150 l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~--~~~~~~i~~SAT~~~~ 207 (391)
+..++.+ +..+.+++++|+||||..... .-.....+..+ .....+|+||||+|..
T Consensus 83 ~~~~~~~-p~~~~~yd~II~DEcH~~Dp~--sIA~rg~l~~~~~~g~~~~i~mTATPPG~ 139 (148)
T PF07652_consen 83 YGHFLLN-PCRLKNYDVIIMDECHFTDPT--SIAARGYLRELAESGEAKVIFMTATPPGS 139 (148)
T ss_dssp HHHHHHT-SSCTTS-SEEEECTTT--SHH--HHHHHHHHHHHHHTTS-EEEEEESS-TT-
T ss_pred HHHHhcC-cccccCccEEEEeccccCCHH--HHhhheeHHHhhhccCeeEEEEeCCCCCC
Confidence 8887766 555789999999999986433 22222333322 2346899999999875
|
The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A .... |
| >KOG0920|consensus | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.7e-13 Score=140.22 Aligned_cols=252 Identities=17% Similarity=0.170 Sum_probs=156.2
Q ss_pred CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHH-h--cCCeEEEEcccHHHHHHHHHHHHHhcc-----ccee
Q psy6275 58 LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSL-K--QSQRVIYTTPIKALSNQKYREFEEQFK-----DVGL 129 (391)
Q Consensus 58 ~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l-~--~~~~vlvl~P~~~L~~q~~~~~~~~~~-----~v~~ 129 (391)
.+..+.+.+.++.+++.++++|.||||||+.....++... . ...++++..|.|--|..+++++..--+ .||.
T Consensus 174 a~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~VGY 253 (924)
T KOG0920|consen 174 AYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGESLGEEVGY 253 (924)
T ss_pred cHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhccccCCeeeE
Confidence 5567778888999999999999999999998766666653 2 356899999999887777777665543 3333
Q ss_pred -eeCCcccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCc-cccchhHHHHHHHhCCCCcEEEEcccCCCh
Q psy6275 130 -ITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRD-KERGYVWEETLILLSDNVRFVFLSATIPNA 207 (391)
Q Consensus 130 -~~g~~~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~ 207 (391)
+..+......+.+++||.|.+++.+.. ...+..+..+|+||+|+-.- .++--.+-..+....++.++|+||||+ +.
T Consensus 254 qvrl~~~~s~~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~LkvILMSAT~-da 331 (924)
T KOG0920|consen 254 QVRLESKRSRETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKVILMSATL-DA 331 (924)
T ss_pred EEeeecccCCceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceEEEeeeec-ch
Confidence 222333444588999999999999877 44578999999999997432 212222222222335789999999999 57
Q ss_pred HHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCC
Q psy6275 208 SQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGP 287 (391)
Q Consensus 208 ~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (391)
+.|..|++ .+.++...++..|+..++...--... .|........ .....+ .......+--.
T Consensus 332 e~fs~YF~-----~~pvi~i~grtfpV~~~fLEDil~~~-------~~~~~~~~~~--~~~~~~-----~~~~~~~~~~~ 392 (924)
T KOG0920|consen 332 ELFSDYFG-----GCPVITIPGRTFPVKEYFLEDILSKT-------GYVSEDDSAR--SGPERS-----QLRLARLKLWE 392 (924)
T ss_pred HHHHHHhC-----CCceEeecCCCcchHHHHHHHHHHHh-------cccccccccc--cccccC-----ccccccchhcc
Confidence 77888876 34567777888887766642110000 0000000000 000000 00000000000
Q ss_pred CCCCcccHHHHHHHHHHcC-CCcEEEEEcchhhHHHHHHHhhcc
Q psy6275 288 KGGVQTNCFKIVKMIMERN-LAPVIVFSFSKKDCEIYAMQMAKL 330 (391)
Q Consensus 288 ~~~~~~~~~~l~~~l~~~~-~~~~iIF~~t~~~~~~la~~L~~~ 330 (391)
.+.-.+.+..+++.+...+ .+.+|||.+...+...+...|...
T Consensus 393 ~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~ 436 (924)
T KOG0920|consen 393 PEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVN 436 (924)
T ss_pred ccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhc
Confidence 0011123344444444433 578999999999999999999753
|
|
| >TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.7e-13 Score=140.68 Aligned_cols=144 Identities=22% Similarity=0.234 Sum_probs=98.8
Q ss_pred CcHHHHHHHHHH----hc------CCcEEEEecCCcchHHHHHHHHHHHH--hcCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy6275 58 LDPFQKEAILCI----EN------NQSVLVSAHTSAGKTVVAEYAIASSL--KQSQRVIYTTPIKALSNQKYREFEEQFK 125 (391)
Q Consensus 58 ~~~~Q~~~i~~i----~~------~~~~li~apTGsGKT~~~~~~~~~~l--~~~~~vlvl~P~~~L~~q~~~~~~~~~~ 125 (391)
++++|..|+..+ .+ .+..+++.+||||||++.+..+...+ ....++|+++|+.+|..|+.+.|.....
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~~~~ 318 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQSLQK 318 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHhhCC
Confidence 889999999865 22 35799999999999998776665544 3467999999999999999999998874
Q ss_pred cceeeeCCcc------cCCCCCEEEEcHHHHHHHHhcCccc--cCcc-ceEEEecccccCccccchhHHHHH-HHhCCCC
Q psy6275 126 DVGLITGDVT------INPSSSCLIMTTEILRNMLYRGSEI--TREV-GWVIFDEIHYMRDKERGYVWEETL-ILLSDNV 195 (391)
Q Consensus 126 ~v~~~~g~~~------~~~~~~I~v~Tp~~l~~~l~~~~~~--l~~~-~~lViDE~h~~~~~~~~~~~~~i~-~~~~~~~ 195 (391)
......+... ...+..|+|+|.+.+...+...... ...- .+||+||||+... + .+...+ ..++ +.
T Consensus 319 ~~~~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~---~-~~~~~l~~~~p-~a 393 (667)
T TIGR00348 319 DCAERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQY---G-ELAKNLKKALK-NA 393 (667)
T ss_pred CCCcccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccc---h-HHHHHHHhhCC-CC
Confidence 2111111100 1234689999999997644332111 1111 2899999998632 2 333334 4454 57
Q ss_pred cEEEEcccCCC
Q psy6275 196 RFVFLSATIPN 206 (391)
Q Consensus 196 ~~i~~SAT~~~ 206 (391)
.+++|||||-.
T Consensus 394 ~~lGfTaTP~~ 404 (667)
T TIGR00348 394 SFFGFTGTPIF 404 (667)
T ss_pred cEEEEeCCCcc
Confidence 89999999964
|
Members of this family are assumed to differ from each other in DNA site specificity. |
| >KOG1123|consensus | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.2e-14 Score=136.33 Aligned_cols=268 Identities=16% Similarity=0.197 Sum_probs=169.2
Q ss_pred CCcccccccccCCCCccCCCCCcHHHHHHHHHHhc---CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHH
Q psy6275 37 DLEYQPLAQSKEKPAREYPFVLDPFQKEAILCIEN---NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALS 113 (391)
Q Consensus 37 ~~~~~~l~~~~~~~~~~~~~~~~~~Q~~~i~~i~~---~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~ 113 (391)
+|..-...+.+...|+... .++|+|.+.+..+.. .++.+|+.|.|+|||++-+.++... ..++||++.+-.-+
T Consensus 283 DFRND~~npdl~idLKPst-~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~ti---kK~clvLcts~VSV 358 (776)
T KOG1123|consen 283 DFRNDNVNPDLDIDLKPST-QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACTI---KKSCLVLCTSAVSV 358 (776)
T ss_pred ccccCCCCCCCCcCcCccc-ccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeeee---cccEEEEecCccCH
Confidence 5555566666655444332 399999999998853 3678999999999999866555443 67899999999999
Q ss_pred HHHHHHHHHhcc----cceeeeCCccc--CCCCCEEEEcHHHHHHHHhcCc--------cccCccceEEEecccccCccc
Q psy6275 114 NQKYREFEEQFK----DVGLITGDVTI--NPSSSCLIMTTEILRNMLYRGS--------EITREVGWVIFDEIHYMRDKE 179 (391)
Q Consensus 114 ~q~~~~~~~~~~----~v~~~~g~~~~--~~~~~I~v~Tp~~l~~~l~~~~--------~~l~~~~~lViDE~h~~~~~~ 179 (391)
.||..+|..+.. .+..++++... ...+.|+|+|+.++..--.+.. ..-+.++++++||+|.+...
T Consensus 359 eQWkqQfk~wsti~d~~i~rFTsd~Ke~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~- 437 (776)
T KOG1123|consen 359 EQWKQQFKQWSTIQDDQICRFTSDAKERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAK- 437 (776)
T ss_pred HHHHHHHHhhcccCccceEEeeccccccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHH-
Confidence 999999998876 56677776654 3467899999987653221110 11247899999999998654
Q ss_pred cchhHHHHHHHhCCCCcEEEEcccCCChHH-H-------------HHHhccccCCCeeEeeeCCCCcCceEeeccCCCCC
Q psy6275 180 RGYVWEETLILLSDNVRFVFLSATIPNASQ-F-------------AQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDG 245 (391)
Q Consensus 180 ~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~-~-------------~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~ 245 (391)
.++.++......+ -+++|||+-.+.+ + ++|+.-..++.+.-+.+.+ ++++...
T Consensus 438 ---MFRRVlsiv~aHc-KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaE---------VWCpMt~ 504 (776)
T KOG1123|consen 438 ---MFRRVLSIVQAHC-KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAE---------VWCPMTP 504 (776)
T ss_pred ---HHHHHHHHHHHHh-hccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeee---------eecCCCH
Confidence 3444444433333 3689999876522 2 2333322222222222221 2222210
Q ss_pred eeeeecCchhhhhch--HHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHH
Q psy6275 246 IHLIVDDNKFKEHNY--QVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIY 323 (391)
Q Consensus 246 ~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~l 323 (391)
-++ ..|..... ..++..|+. .....++-|++....+ +.++|||..+.-....+
T Consensus 505 eFy----~eYL~~~t~kr~lLyvMNP--------------------~KFraCqfLI~~HE~R-gDKiIVFsDnvfALk~Y 559 (776)
T KOG1123|consen 505 EFY----REYLRENTRKRMLLYVMNP--------------------NKFRACQFLIKFHERR-GDKIIVFSDNVFALKEY 559 (776)
T ss_pred HHH----HHHHhhhhhhhheeeecCc--------------------chhHHHHHHHHHHHhc-CCeEEEEeccHHHHHHH
Confidence 000 01111111 111112211 0013466777776665 46999999999999999
Q ss_pred HHHhhc---cCCCChHHHHHHHHHHHH
Q psy6275 324 AMQMAK---LNFNETEEVKLVDDVFSN 347 (391)
Q Consensus 324 a~~L~~---~g~~~~~~r~~~~~~~~~ 347 (391)
|-.|.+ +|-..+.+|..|.+.|+-
T Consensus 560 Aikl~KpfIYG~Tsq~ERm~ILqnFq~ 586 (776)
T KOG1123|consen 560 AIKLGKPFIYGPTSQNERMKILQNFQT 586 (776)
T ss_pred HHHcCCceEECCCchhHHHHHHHhccc
Confidence 999988 588888999999888875
|
|
| >KOG0923|consensus | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.2e-13 Score=133.69 Aligned_cols=216 Identities=15% Similarity=0.249 Sum_probs=149.3
Q ss_pred CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHH-HH-hcCCeEEEEcccHHHHHHHHHHHHHhcc-----cceee
Q psy6275 58 LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIAS-SL-KQSQRVIYTTPIKALSNQKYREFEEQFK-----DVGLI 130 (391)
Q Consensus 58 ~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~-~l-~~~~~vlvl~P~~~L~~q~~~~~~~~~~-----~v~~~ 130 (391)
.+++-.+.+.++..++.++|.|.||||||+.....+.. .. +.+.++-+..|.|.-|..++.++.+-.+ .||..
T Consensus 266 Vy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eVGYs 345 (902)
T KOG0923|consen 266 VYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHEVGYS 345 (902)
T ss_pred chhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHHhCcccccccceE
Confidence 45666777888899999999999999999974333322 22 3345599999999999999888777654 23331
Q ss_pred eC-CcccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHH------HHhCCCCcEEEEccc
Q psy6275 131 TG-DVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETL------ILLSDNVRFVFLSAT 203 (391)
Q Consensus 131 ~g-~~~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~------~~~~~~~~~i~~SAT 203 (391)
.- ......++-|-++|.|+|++-+...+. |.+++++|+||||.- .-..+.++ ..++++.+++++|||
T Consensus 346 IRFEdcTSekTvlKYMTDGmLlREfL~epd-LasYSViiiDEAHER-----TL~TDILfgLvKDIar~RpdLKllIsSAT 419 (902)
T KOG0923|consen 346 IRFEDCTSEKTVLKYMTDGMLLREFLSEPD-LASYSVIIVDEAHER-----TLHTDILFGLVKDIARFRPDLKLLISSAT 419 (902)
T ss_pred EEeccccCcceeeeeecchhHHHHHhcccc-ccceeEEEeehhhhh-----hhhhhHHHHHHHHHHhhCCcceEEeeccc
Confidence 11 122234567889999999987766554 789999999999952 22222222 234578999999999
Q ss_pred CCChHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhhhccCCCCCCC
Q psy6275 204 IPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGR 283 (391)
Q Consensus 204 ~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (391)
+ +++.|..|++ .+.+|...+|..|+..++-..+.. .+..
T Consensus 420 ~-DAekFS~fFD-----dapIF~iPGRRyPVdi~Yt~~PEA--------------dYld--------------------- 458 (902)
T KOG0923|consen 420 M-DAEKFSAFFD-----DAPIFRIPGRRYPVDIFYTKAPEA--------------DYLD--------------------- 458 (902)
T ss_pred c-CHHHHHHhcc-----CCcEEeccCcccceeeecccCCch--------------hHHH---------------------
Confidence 9 6777888875 345677788888988888655532 1111
Q ss_pred CCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhc
Q psy6275 284 KGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAK 329 (391)
Q Consensus 284 ~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~ 329 (391)
..+..++++....+.+-+|||....++.+...+.|..
T Consensus 459 ---------Aai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~ 495 (902)
T KOG0923|consen 459 ---------AAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKE 495 (902)
T ss_pred ---------HHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHH
Confidence 1122344444445567899999999988887777754
|
|
| >PRK12906 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=9e-14 Score=141.17 Aligned_cols=120 Identities=18% Similarity=0.208 Sum_probs=94.0
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc----ccee
Q psy6275 54 YPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK----DVGL 129 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~----~v~~ 129 (391)
+|..|++.|.-.--.+..|+ +....||+|||+++.+|+......|..|-+++|+.-||.|-+..+..++. .+++
T Consensus 77 ~g~~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~G~~v~vvT~neyLA~Rd~e~~~~~~~~LGl~vg~ 154 (796)
T PRK12906 77 LGLRPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALTGKGVHVVTVNEYLSSRDATEMGELYRWLGLTVGL 154 (796)
T ss_pred hCCCCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHcCCCeEEEeccHHHHHhhHHHHHHHHHhcCCeEEE
Confidence 46778999988877777776 99999999999999999888888899999999999999999999998887 5666
Q ss_pred eeCCcccC-----CCCCEEEEcHHHHH-HHHhcC------ccccCccceEEEeccccc
Q psy6275 130 ITGDVTIN-----PSSSCLIMTTEILR-NMLYRG------SEITREVGWVIFDEIHYM 175 (391)
Q Consensus 130 ~~g~~~~~-----~~~~I~v~Tp~~l~-~~l~~~------~~~l~~~~~lViDE~h~~ 175 (391)
++++.+.. -.++|+++|...+- +++... ....+.+.+.|+||+|.+
T Consensus 155 i~~~~~~~~r~~~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSi 212 (796)
T PRK12906 155 NLNSMSPDEKRAAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSI 212 (796)
T ss_pred eCCCCCHHHHHHHhcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchhe
Confidence 76665432 25799999985432 233221 123457889999999976
|
|
| >KOG0924|consensus | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.8e-13 Score=132.80 Aligned_cols=172 Identities=17% Similarity=0.202 Sum_probs=120.3
Q ss_pred cHHHHHHHHHHhcCCcEEEEecCCcchHHHHH-HHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc-----cceeeeC
Q psy6275 59 DPFQKEAILCIENNQSVLVSAHTSAGKTVVAE-YAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK-----DVGLITG 132 (391)
Q Consensus 59 ~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~-~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~-----~v~~~~g 132 (391)
...+.+.+..+..++.++++|.||||||+... +........++-+-+..|.|..|..+++++.+-.+ .||...-
T Consensus 358 f~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIR 437 (1042)
T KOG0924|consen 358 FACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIR 437 (1042)
T ss_pred HHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccceEEE
Confidence 34555666667788899999999999999753 33333445567888999999999999998887764 3443222
Q ss_pred Cc-ccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHH------HhCCCCcEEEEcccCC
Q psy6275 133 DV-TINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLI------LLSDNVRFVFLSATIP 205 (391)
Q Consensus 133 ~~-~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~------~~~~~~~~i~~SAT~~ 205 (391)
.. ...+.+.|-++|.+.|++...... .|.+++++|+||||+- ....+.++. ..+.+.++|.+|||+
T Consensus 438 FEdvT~~~T~IkymTDGiLLrEsL~d~-~L~kYSviImDEAHER-----slNtDilfGllk~~larRrdlKliVtSATm- 510 (1042)
T KOG0924|consen 438 FEDVTSEDTKIKYMTDGILLRESLKDR-DLDKYSVIIMDEAHER-----SLNTDILFGLLKKVLARRRDLKLIVTSATM- 510 (1042)
T ss_pred eeecCCCceeEEEeccchHHHHHhhhh-hhhheeEEEechhhhc-----ccchHHHHHHHHHHHHhhccceEEEeeccc-
Confidence 11 123567799999999886544333 4679999999999963 222222221 123579999999999
Q ss_pred ChHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCC
Q psy6275 206 NASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNG 242 (391)
Q Consensus 206 ~~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~ 242 (391)
+.+.|+.|++. +..+.-.+|..|++..+...+
T Consensus 511 ~a~kf~nfFgn-----~p~f~IpGRTyPV~~~~~k~p 542 (1042)
T KOG0924|consen 511 DAQKFSNFFGN-----CPQFTIPGRTYPVEIMYTKTP 542 (1042)
T ss_pred cHHHHHHHhCC-----CceeeecCCccceEEEeccCc
Confidence 77779988763 345666788888887776544
|
|
| >KOG0925|consensus | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.4e-12 Score=122.24 Aligned_cols=236 Identities=16% Similarity=0.228 Sum_probs=148.8
Q ss_pred CCcccccccccCCCCccCC-CCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHH-HHhcCCeEEEEcccHHHHH
Q psy6275 37 DLEYQPLAQSKEKPAREYP-FVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIAS-SLKQSQRVIYTTPIKALSN 114 (391)
Q Consensus 37 ~~~~~~l~~~~~~~~~~~~-~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~-~l~~~~~vlvl~P~~~L~~ 114 (391)
.|...+..+...+-+++.- ...+..+.+.+..+.+++-++++|.||||||+.....++. .+.....|.+..|.|.-+.
T Consensus 26 pf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~~~v~CTQprrvaam 105 (699)
T KOG0925|consen 26 PFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHLTGVACTQPRRVAAM 105 (699)
T ss_pred CCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhccceeecCchHHHHH
Confidence 4455555554444333322 2345566666677788999999999999999875444433 3344578999999999999
Q ss_pred HHHHHHHHhcc-cceeeeCCccc-----CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHH
Q psy6275 115 QKYREFEEQFK-DVGLITGDVTI-----NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETL 188 (391)
Q Consensus 115 q~~~~~~~~~~-~v~~~~g~~~~-----~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~ 188 (391)
+++.++.+-.. .+|--.|-.-. ..++-+-++|.++|++.....+ .+..++++|+||||+- ....+.++
T Consensus 106 sva~RVadEMDv~lG~EVGysIrfEdC~~~~T~Lky~tDgmLlrEams~p-~l~~y~viiLDeahER-----tlATDiLm 179 (699)
T KOG0925|consen 106 SVAQRVADEMDVTLGEEVGYSIRFEDCTSPNTLLKYCTDGMLLREAMSDP-LLGRYGVIILDEAHER-----TLATDILM 179 (699)
T ss_pred HHHHHHHHHhccccchhccccccccccCChhHHHHHhcchHHHHHHhhCc-ccccccEEEechhhhh-----hHHHHHHH
Confidence 99988877654 22222222111 1223345778888776665554 3789999999999952 22222222
Q ss_pred HH------hCCCCcEEEEcccCCChHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHH
Q psy6275 189 IL------LSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQV 262 (391)
Q Consensus 189 ~~------~~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 262 (391)
.. .+++.++|.||||+ ....|..|++ +. .+....+ ..|++.++...+.+ +|
T Consensus 180 Gllk~v~~~rpdLk~vvmSatl-~a~Kfq~yf~----n~-Pll~vpg-~~PvEi~Yt~e~er---------Dy------- 236 (699)
T KOG0925|consen 180 GLLKEVVRNRPDLKLVVMSATL-DAEKFQRYFG----NA-PLLAVPG-THPVEIFYTPEPER---------DY------- 236 (699)
T ss_pred HHHHHHHhhCCCceEEEeeccc-chHHHHHHhC----CC-CeeecCC-CCceEEEecCCCCh---------hH-------
Confidence 21 13589999999999 4444666654 22 2333333 55677766543322 11
Q ss_pred HHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhc
Q psy6275 263 AMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAK 329 (391)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~ 329 (391)
.+..+..++++......+-++||....++.+..++.+..
T Consensus 237 ----------------------------lEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~r 275 (699)
T KOG0925|consen 237 ----------------------------LEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISR 275 (699)
T ss_pred ----------------------------HHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHH
Confidence 123344666766666667899999999998888888864
|
|
| >PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.4e-10 Score=122.27 Aligned_cols=152 Identities=11% Similarity=0.088 Sum_probs=104.9
Q ss_pred CCcHHHHHHHHHHh----cCCcEEEEecCCcchHHHHHHHHHHHH---hcCCeEEEEcccHHHHHHHHHHHHHhcc--cc
Q psy6275 57 VLDPFQKEAILCIE----NNQSVLVSAHTSAGKTVVAEYAIASSL---KQSQRVIYTTPIKALSNQKYREFEEQFK--DV 127 (391)
Q Consensus 57 ~~~~~Q~~~i~~i~----~~~~~li~apTGsGKT~~~~~~~~~~l---~~~~~vlvl~P~~~L~~q~~~~~~~~~~--~v 127 (391)
++++||.+++..+. .+.+.|++-.+|.|||+..+..+.... ...+.+|||+|. ++..+|...+.+++. .+
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~-SlL~nW~~Ei~kw~p~l~v 247 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPK-STLGNWMNEIRRFCPVLRA 247 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeCh-HHHHHHHHHHHHHCCCCce
Confidence 58999999998763 578899999999999997654433221 124679999995 677889999999887 45
Q ss_pred eeeeCCccc----------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcE
Q psy6275 128 GLITGDVTI----------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRF 197 (391)
Q Consensus 128 ~~~~g~~~~----------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~ 197 (391)
..++|+... ..+.+|+|+|++.+......-. --.+++||+||||.+-.. .......+..+.. ...
T Consensus 248 ~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~L~--k~~W~~VIvDEAHrIKN~--~Sklskalr~L~a-~~R 322 (1033)
T PLN03142 248 VKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTALK--RFSWRYIIIDEAHRIKNE--NSLLSKTMRLFST-NYR 322 (1033)
T ss_pred EEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHHhc--cCCCCEEEEcCccccCCH--HHHHHHHHHHhhc-CcE
Confidence 556665431 2357899999998865432111 125789999999998643 2334445555543 456
Q ss_pred EEEcccCCCh--HHHHHHh
Q psy6275 198 VFLSATIPNA--SQFAQWV 214 (391)
Q Consensus 198 i~~SAT~~~~--~~~~~~l 214 (391)
+++|+||-.. .++...+
T Consensus 323 LLLTGTPlqNnl~ELwsLL 341 (1033)
T PLN03142 323 LLITGTPLQNNLHELWALL 341 (1033)
T ss_pred EEEecCCCCCCHHHHHHHH
Confidence 8899998643 4444444
|
|
| >PRK12326 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.3e-11 Score=117.63 Aligned_cols=120 Identities=18% Similarity=0.148 Sum_probs=94.5
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc----ccee
Q psy6275 54 YPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK----DVGL 129 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~----~v~~ 129 (391)
+|..|++.|.-..-.++.|+ +....||.|||+++.+|+......+..|-+++|+.-||.+-++.+..++. .+++
T Consensus 75 lg~r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~G~~VhvvT~NdyLA~RDae~m~~ly~~LGLsvg~ 152 (764)
T PRK12326 75 LGLRPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQGRRVHVITVNDYLARRDAEWMGPLYEALGLTVGW 152 (764)
T ss_pred cCCCcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHcCCCeEEEcCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 57789999999988888876 78999999999999988887778899999999999999999999998887 5666
Q ss_pred eeCCcccC-----CCCCEEEEcHHHHH-HHHhcC------ccccCccceEEEeccccc
Q psy6275 130 ITGDVTIN-----PSSSCLIMTTEILR-NMLYRG------SEITREVGWVIFDEIHYM 175 (391)
Q Consensus 130 ~~g~~~~~-----~~~~I~v~Tp~~l~-~~l~~~------~~~l~~~~~lViDE~h~~ 175 (391)
++++.+.. -+++|+++|..-+- +++... ....+.+.+.|+||+|.+
T Consensus 153 i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSi 210 (764)
T PRK12326 153 ITEESTPEERRAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSV 210 (764)
T ss_pred ECCCCCHHHHHHHHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhh
Confidence 76665532 25899999985422 222211 123457889999999976
|
|
| >PRK13103 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.25 E-value=9.4e-11 Score=119.96 Aligned_cols=120 Identities=16% Similarity=0.173 Sum_probs=93.6
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc----ccee
Q psy6275 54 YPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK----DVGL 129 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~----~v~~ 129 (391)
+|..|+++|.-.--.+..|+ +..+.||.|||+++.+|+......|..|-+++|+.-||.+-+..+..++. .+++
T Consensus 79 lGm~~ydVQliGg~~Lh~G~--iaEM~TGEGKTLvA~l~a~l~al~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~ 156 (913)
T PRK13103 79 MGMRHFDVQLIGGMTLHEGK--IAEMRTGEGKTLVGTLAVYLNALSGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGI 156 (913)
T ss_pred hCCCcchhHHHhhhHhccCc--cccccCCCCChHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHhcccCCEEEE
Confidence 46678888887765666665 88999999999999999887777899999999999999999999999987 5666
Q ss_pred eeCCcccCC-----CCCEEEEcHHHH-HHHHhcCc------cccCccceEEEeccccc
Q psy6275 130 ITGDVTINP-----SSSCLIMTTEIL-RNMLYRGS------EITREVGWVIFDEIHYM 175 (391)
Q Consensus 130 ~~g~~~~~~-----~~~I~v~Tp~~l-~~~l~~~~------~~l~~~~~lViDE~h~~ 175 (391)
++++..... .++|+++|..-+ .+++.... ...+.+.++|+||+|.+
T Consensus 157 i~~~~~~~err~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsi 214 (913)
T PRK13103 157 VTPFQPPEEKRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSI 214 (913)
T ss_pred ECCCCCHHHHHHHhcCCEEEEcccccccchhhccceechhhhcccccceeEechhhhe
Confidence 766654321 489999999764 23333221 12478999999999976
|
|
| >PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.7e-11 Score=123.76 Aligned_cols=72 Identities=18% Similarity=0.206 Sum_probs=58.2
Q ss_pred CCccCCCCCcHHHHHHHHH----HhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHH-HHHHH
Q psy6275 50 PAREYPFVLDPFQKEAILC----IENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKY-REFEE 122 (391)
Q Consensus 50 ~~~~~~~~~~~~Q~~~i~~----i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~-~~~~~ 122 (391)
.+...||++++-|.+.... +.+++.+++.|+||+|||++|++|++... .+.+++|++||++|++|+. +.+..
T Consensus 238 ~~~~~~~e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~-~~~~vvI~t~T~~Lq~Ql~~~~i~~ 314 (820)
T PRK07246 238 NIALLGLEERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS-DQRQIIVSVPTKILQDQIMAEEVKA 314 (820)
T ss_pred hhccCCCccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc-CCCcEEEEeCcHHHHHHHHHHHHHH
Confidence 3344578999999995544 45678899999999999999999988754 4689999999999999995 43433
|
|
| >PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.2e-10 Score=105.01 Aligned_cols=151 Identities=23% Similarity=0.211 Sum_probs=93.2
Q ss_pred HHHHHHHHH-------------hcCCcEEEEecCCcchHHHHHHHHHHHHhcC-----CeEEEEcccHHHHHHHHHHHHH
Q psy6275 61 FQKEAILCI-------------ENNQSVLVSAHTSAGKTVVAEYAIASSLKQS-----QRVIYTTPIKALSNQKYREFEE 122 (391)
Q Consensus 61 ~Q~~~i~~i-------------~~~~~~li~apTGsGKT~~~~~~~~~~l~~~-----~~vlvl~P~~~L~~q~~~~~~~ 122 (391)
+|.+++..+ ...+.++++-.+|+|||...+..+....... ..+||++|. .+..++..++.+
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~ 79 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEK 79 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhcc
Confidence 588888755 2346789999999999998766665433222 259999999 888999999999
Q ss_pred hcc----cceeeeCCc-------ccCCCCCEEEEcHHHHHHHHh-cC--ccccCccceEEEecccccCccccchhHHHHH
Q psy6275 123 QFK----DVGLITGDV-------TINPSSSCLIMTTEILRNMLY-RG--SEITREVGWVIFDEIHYMRDKERGYVWEETL 188 (391)
Q Consensus 123 ~~~----~v~~~~g~~-------~~~~~~~I~v~Tp~~l~~~l~-~~--~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~ 188 (391)
+.. ++....|.. ......+++++|++.+..... .. ...--.++++|+||+|.+-+. .......+
T Consensus 80 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~--~s~~~~~l 157 (299)
T PF00176_consen 80 WFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNK--DSKRYKAL 157 (299)
T ss_dssp HSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTT--TSHHHHHH
T ss_pred ccccccccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEecccccccc--cccccccc
Confidence 984 445555554 223467899999999881100 00 001125899999999998432 33333333
Q ss_pred HHhCCCCcEEEEcccCCCh--HHHHHHhc
Q psy6275 189 ILLSDNVRFVFLSATIPNA--SQFAQWVS 215 (391)
Q Consensus 189 ~~~~~~~~~i~~SAT~~~~--~~~~~~l~ 215 (391)
..+. ....+++|||+-.. .++...+.
T Consensus 158 ~~l~-~~~~~lLSgTP~~n~~~dl~~~l~ 185 (299)
T PF00176_consen 158 RKLR-ARYRWLLSGTPIQNSLEDLYSLLR 185 (299)
T ss_dssp HCCC-ECEEEEE-SS-SSSGSHHHHHHHH
T ss_pred cccc-cceEEeeccccccccccccccchh
Confidence 3355 56788899997653 55555443
|
g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W. |
| >TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.6e-10 Score=116.25 Aligned_cols=58 Identities=26% Similarity=0.327 Sum_probs=50.4
Q ss_pred HHHhcCCcEEEEecCCcchHHHHHHHHHHHHh--cCCeEEEEcccHHHHHHHHHHHHHhc
Q psy6275 67 LCIENNQSVLVSAHTSAGKTVVAEYAIASSLK--QSQRVIYTTPIKALSNQKYREFEEQF 124 (391)
Q Consensus 67 ~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~--~~~~vlvl~P~~~L~~q~~~~~~~~~ 124 (391)
..+.+++.+++.||||+|||++|++|++..+. .+.+++|++||++|..|+.+.+..+.
T Consensus 11 ~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~~~~rvlIstpT~~Lq~Ql~~~l~~l~ 70 (636)
T TIGR03117 11 TSLRQKRIGMLEASTGVGKTLAMIMAALTMLKERPDQKIAIAVPTLALMGQLWSELERLT 70 (636)
T ss_pred HHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhccCceEEEECCcHHHHHHHHHHHHHHH
Confidence 34567889999999999999999999988764 47899999999999999998877665
|
Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome. |
| >KOG4150|consensus | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.3e-10 Score=111.09 Aligned_cols=274 Identities=12% Similarity=0.031 Sum_probs=178.5
Q ss_pred CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHH--hcCCeEEEEcccHHHHHHHHHHHHHhcc--------cc
Q psy6275 58 LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSL--KQSQRVIYTTPIKALSNQKYREFEEQFK--------DV 127 (391)
Q Consensus 58 ~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l--~~~~~vlvl~P~~~L~~q~~~~~~~~~~--------~v 127 (391)
...+|.+++..+.+|++.++.-.|.+||++++.......+ ......+++.|+++++....+-+.-... -|
T Consensus 287 ~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~~~I~~~K~A~V 366 (1034)
T KOG4150|consen 287 GIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHATNSLLPSEMVEHLRNGSKGQVVHVEVIKARKSAYV 366 (1034)
T ss_pred hhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCcccceecchhHHHHhhccCCceEEEEEehhhhhccee
Confidence 6699999999999999999999999999999977765543 3456788999999998765433221111 12
Q ss_pred eeeeCCccc------CCCCCEEEEcHHHHHHHHhcC----ccccCccceEEEecccccCccccchhHHHHHHHh------
Q psy6275 128 GLITGDVTI------NPSSSCLIMTTEILRNMLYRG----SEITREVGWVIFDEIHYMRDKERGYVWEETLILL------ 191 (391)
Q Consensus 128 ~~~~g~~~~------~~~~~I~v~Tp~~l~~~l~~~----~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~------ 191 (391)
....|++.. +...+++++.|+......-.+ ..++-...+++.||+|..... ++......++.+
T Consensus 367 ~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~-~~~~~~~~~R~L~~L~~~ 445 (1034)
T KOG4150|consen 367 EMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFP-TKALAQDQLRALSDLIKG 445 (1034)
T ss_pred ecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecc-hhhHHHHHHHHHHHHHHH
Confidence 223333322 235678999998766543322 123336678999999986432 333333333322
Q ss_pred ---CCCCcEEEEcccCCChHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHhh
Q psy6275 192 ---SDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLA 268 (391)
Q Consensus 192 ---~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 268 (391)
..+.|++-.|||+.....+..-+.. -+.+..+..++.|..-++++++.+.-- ..+
T Consensus 446 F~~~~~~~~~~~~~~~K~~~~~~~~~~~--~~E~~Li~~DGSPs~~K~~V~WNP~~~-----------P~~--------- 503 (1034)
T KOG4150|consen 446 FEASINMGVYDGDTPYKDRTRLRSELAN--LSELELVTIDGSPSSEKLFVLWNPSAP-----------PTS--------- 503 (1034)
T ss_pred HHhhcCcceEeCCCCcCCHHHHHHHhcC--CcceEEEEecCCCCccceEEEeCCCCC-----------Ccc---------
Confidence 3579999999999877434333222 345677888999999899988766310 000
Q ss_pred hhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhcc-----------------C
Q psy6275 269 NAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKL-----------------N 331 (391)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~-----------------g 331 (391)
+ ..+++..-....++..+..++. ++|.||.+|+-|+-+....+.. |
T Consensus 504 ------------~----~~~~~~i~E~s~~~~~~i~~~~-R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGG 566 (1034)
T KOG4150|consen 504 ------------K----SEKSSKVVEVSHLFAEMVQHGL-RCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGG 566 (1034)
T ss_pred ------------h----hhhhhHHHHHHHHHHHHHHcCC-cEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCc
Confidence 0 0011111112344444555554 8999999999999887665442 6
Q ss_pred CCChHHHHHHHHHHHHHhhhcchhhccCcchHhHHHHHHhhhhhc------cCCCCc
Q psy6275 332 FNETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRGIGIH------HGVKPY 382 (391)
Q Consensus 332 ~~~~~~r~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~GI~~~------h~~~~~ 382 (391)
|.+.++|..-.+.|.+.+..+++| ++|+-||||- |.|.|.
T Consensus 567 Y~A~DRRKIE~~~F~G~L~giIaT-----------NALELGIDIG~LDAVl~~GFP~ 612 (1034)
T KOG4150|consen 567 YIAEDRRKIESDLFGGKLCGIIAT-----------NALELGIDIGHLDAVLHLGFPG 612 (1034)
T ss_pred cchhhHHHHHHHhhCCeeeEEEec-----------chhhhccccccceeEEEccCch
Confidence 666677777778888877777777 5999999995 456663
|
|
| >COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.3e-09 Score=112.91 Aligned_cols=70 Identities=26% Similarity=0.266 Sum_probs=59.1
Q ss_pred CCCCCcHHHHHHHHHH----hcCCcEEEEecCCcchHHHHHHHHHHHH-hcCCeEEEEcccHHHHHHHHHHHHHh
Q psy6275 54 YPFVLDPFQKEAILCI----ENNQSVLVSAHTSAGKTVVAEYAIASSL-KQSQRVIYTTPIKALSNQKYREFEEQ 123 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i----~~~~~~li~apTGsGKT~~~~~~~~~~l-~~~~~vlvl~P~~~L~~q~~~~~~~~ 123 (391)
.++++++.|.+.+..+ .+++.+++.||||+|||++|+.|++... ..+.+++|.++|+.|.+|...+....
T Consensus 12 ~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~~~~viist~t~~lq~q~~~~~~~~ 86 (654)
T COG1199 12 PGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREEGKKVIISTRTKALQEQLLEEDLPI 86 (654)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHcCCcEEEECCCHHHHHHHHHhhcch
Confidence 4678999999998754 4566699999999999999999988865 34589999999999999999886654
|
|
| >PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.9e-10 Score=120.98 Aligned_cols=66 Identities=20% Similarity=0.187 Sum_probs=56.2
Q ss_pred CCCCCcHHHHHHHHHH----hcCCcEEEEecCCcchHHHHHHHHHHHH-hcCCeEEEEcccHHHHHHHHHH
Q psy6275 54 YPFVLDPFQKEAILCI----ENNQSVLVSAHTSAGKTVVAEYAIASSL-KQSQRVIYTTPIKALSNQKYRE 119 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i----~~~~~~li~apTGsGKT~~~~~~~~~~l-~~~~~vlvl~P~~~L~~q~~~~ 119 (391)
-+|++++-|.+.+..+ .+++.+++.||||+|||++|++|++... ..+.+++|-++|+.|.+|+..+
T Consensus 254 ~~~e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~~~~~vvIsT~T~~LQ~Ql~~k 324 (928)
T PRK08074 254 PKYEKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAKKKEEPVVISTYTIQLQQQLLEK 324 (928)
T ss_pred CCCcCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHh
Confidence 4689999999966544 5678899999999999999999987654 3678999999999999998763
|
|
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.7e-09 Score=101.01 Aligned_cols=68 Identities=29% Similarity=0.302 Sum_probs=56.2
Q ss_pred CCCCcHHHHHHHHHHhc-----CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy6275 55 PFVLDPFQKEAILCIEN-----NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK 125 (391)
Q Consensus 55 ~~~~~~~Q~~~i~~i~~-----~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~ 125 (391)
+|.|..-|-+||..+.+ .+.-.+.|-||||||++..-.+.+. +...||++|.+.|+.|.+.+|+.++.
T Consensus 10 ~f~PaGDQP~AI~~Lv~gi~~g~~~QtLLGvTGSGKTfT~AnVI~~~---~rPtLV~AhNKTLAaQLy~Efk~fFP 82 (663)
T COG0556 10 PFKPAGDQPEAIAELVEGIENGLKHQTLLGVTGSGKTFTMANVIAKV---QRPTLVLAHNKTLAAQLYSEFKEFFP 82 (663)
T ss_pred CCCCCCCcHHHHHHHHHHHhcCceeeEEeeeccCCchhHHHHHHHHh---CCCeEEEecchhHHHHHHHHHHHhCc
Confidence 57788999999987633 2567899999999999865544443 66799999999999999999999985
|
|
| >CHL00122 secA preprotein translocase subunit SecA; Validated | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.5e-09 Score=109.21 Aligned_cols=120 Identities=18% Similarity=0.196 Sum_probs=86.5
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc----ccee
Q psy6275 54 YPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK----DVGL 129 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~----~v~~ 129 (391)
+|..|++.|.-..-.+..| -+..+.||-|||+++.+|+.-....|..|-|++++..||.+-++.+..++. .+++
T Consensus 73 lG~r~ydvQlig~l~L~~G--~IaEm~TGEGKTL~a~l~ayl~aL~G~~VhVvT~NdyLA~RD~e~m~pvy~~LGLsvg~ 150 (870)
T CHL00122 73 LGLRHFDVQLIGGLVLNDG--KIAEMKTGEGKTLVATLPAYLNALTGKGVHIVTVNDYLAKRDQEWMGQIYRFLGLTVGL 150 (870)
T ss_pred hCCCCCchHhhhhHhhcCC--ccccccCCCCchHHHHHHHHHHHhcCCceEEEeCCHHHHHHHHHHHHHHHHHcCCceee
Confidence 4667888888776555544 589999999999999888754434688899999999999998888887776 5555
Q ss_pred eeCCcccC-----CCCCEEEEcHHHHH-HHHhcC------ccccCccceEEEeccccc
Q psy6275 130 ITGDVTIN-----PSSSCLIMTTEILR-NMLYRG------SEITREVGWVIFDEIHYM 175 (391)
Q Consensus 130 ~~g~~~~~-----~~~~I~v~Tp~~l~-~~l~~~------~~~l~~~~~lViDE~h~~ 175 (391)
..++.+.. -.++|+++|..-+- +++... ....+.+.+.|+||+|.+
T Consensus 151 i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSi 208 (870)
T CHL00122 151 IQEGMSSEERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSI 208 (870)
T ss_pred eCCCCChHHHHHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhh
Confidence 55544432 25799999985322 233221 123467899999999976
|
|
| >PRK14873 primosome assembly protein PriA; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=8.1e-09 Score=105.23 Aligned_cols=123 Identities=10% Similarity=0.029 Sum_probs=93.5
Q ss_pred EEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc--cceeeeCCccc-----------CCCCCE
Q psy6275 76 LVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK--DVGLITGDVTI-----------NPSSSC 142 (391)
Q Consensus 76 li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~--~v~~~~g~~~~-----------~~~~~I 142 (391)
+..+-+|||||.+|+-.+...+..|.++||++|..+|+.|+...|+..++ .+.++|++... ..+.+|
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~I 243 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARV 243 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcE
Confidence 34444699999999999999999999999999999999999999999996 67888887653 345789
Q ss_pred EEEcHHHHHHHHhcCccccCccceEEEecccccC-ccccch--hHHHHH--HHhCCCCcEEEEcccCC
Q psy6275 143 LIMTTEILRNMLYRGSEITREVGWVIFDEIHYMR-DKERGY--VWEETL--ILLSDNVRFVFLSATIP 205 (391)
Q Consensus 143 ~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~-~~~~~~--~~~~i~--~~~~~~~~~i~~SAT~~ 205 (391)
+|+|-.-++ ..++++++||+||-|.-. .....+ ....+. +.-..+..+|+.|||++
T Consensus 244 ViGtRSAvF-------aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPS 304 (665)
T PRK14873 244 VVGTRSAVF-------APVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHART 304 (665)
T ss_pred EEEcceeEE-------eccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCC
Confidence 999986442 367899999999999532 111111 222222 22345789999999985
|
|
| >PRK12902 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.99 E-value=7.4e-09 Score=105.75 Aligned_cols=120 Identities=18% Similarity=0.195 Sum_probs=89.2
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc----ccee
Q psy6275 54 YPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK----DVGL 129 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~----~v~~ 129 (391)
+|..|+++|.-.--.+..|+ +..+.||-|||+++.+|+.-....|..|-|++++.-||..=++.+..+.. .+++
T Consensus 82 lG~r~ydVQliGgl~Lh~G~--IAEM~TGEGKTL~atlpaylnAL~GkgVhVVTvNdYLA~RDae~m~~vy~~LGLtvg~ 159 (939)
T PRK12902 82 LGMRHFDVQLIGGMVLHEGQ--IAEMKTGEGKTLVATLPSYLNALTGKGVHVVTVNDYLARRDAEWMGQVHRFLGLSVGL 159 (939)
T ss_pred hCCCcchhHHHhhhhhcCCc--eeeecCCCChhHHHHHHHHHHhhcCCCeEEEeCCHHHHHhHHHHHHHHHHHhCCeEEE
Confidence 46678888887766666665 89999999999999888766556788899999999999887777777766 5666
Q ss_pred eeCCcccC-----CCCCEEEEcHHHH-----HHHHhc--CccccCccceEEEeccccc
Q psy6275 130 ITGDVTIN-----PSSSCLIMTTEIL-----RNMLYR--GSEITREVGWVIFDEIHYM 175 (391)
Q Consensus 130 ~~g~~~~~-----~~~~I~v~Tp~~l-----~~~l~~--~~~~l~~~~~lViDE~h~~ 175 (391)
..++.... -.++|+++|+..+ .+.+.. .....+.+.+.|+||+|.+
T Consensus 160 i~~~~~~~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSI 217 (939)
T PRK12902 160 IQQDMSPEERKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSI 217 (939)
T ss_pred ECCCCChHHHHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccce
Confidence 65544432 2589999999654 333322 1224578899999999976
|
|
| >COG4889 Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.4e-09 Score=108.90 Aligned_cols=137 Identities=18% Similarity=0.163 Sum_probs=90.9
Q ss_pred CCCcccccccccCCCCccC-CCCCcHHHHHHHHHHhcC----CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccH
Q psy6275 36 PDLEYQPLAQSKEKPAREY-PFVLDPFQKEAILCIENN----QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIK 110 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~-~~~~~~~Q~~~i~~i~~~----~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~ 110 (391)
-+|+.+.- .++..++.-. +.+|+|+|+.|+....++ ...-+.+.+|+|||++.+-..-.. . ..++|+++|+.
T Consensus 140 IDW~~f~p-~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEal-a-~~~iL~LvPSI 216 (1518)
T COG4889 140 IDWDIFDP-TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEAL-A-AARILFLVPSI 216 (1518)
T ss_pred CChhhcCc-cccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHH-h-hhheEeecchH
Confidence 34544432 3444444433 346999999999987543 334556678999999976554333 2 38999999999
Q ss_pred HHHHHHHHHHHHhcc---cceeeeCCcccCC--------------------------------CCCEEEEcHHHHHHHHh
Q psy6275 111 ALSNQKYREFEEQFK---DVGLITGDVTINP--------------------------------SSSCLIMTTEILRNMLY 155 (391)
Q Consensus 111 ~L~~q~~~~~~~~~~---~v~~~~g~~~~~~--------------------------------~~~I~v~Tp~~l~~~l~ 155 (391)
+|..|..+.|..... ....++++..... +--|+++|++.+...-.
T Consensus 217 sLLsQTlrew~~~~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~e 296 (1518)
T COG4889 217 SLLSQTLREWTAQKELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKE 296 (1518)
T ss_pred HHHHHHHHHHhhccCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHH
Confidence 999999998887665 2222333222110 12388899988776544
Q ss_pred cCccccCccceEEEeccccc
Q psy6275 156 RGSEITREVGWVIFDEIHYM 175 (391)
Q Consensus 156 ~~~~~l~~~~~lViDE~h~~ 175 (391)
....-+..++++|.||||+.
T Consensus 297 AQe~G~~~fDliicDEAHRT 316 (1518)
T COG4889 297 AQEAGLDEFDLIICDEAHRT 316 (1518)
T ss_pred HHHcCCCCccEEEecchhcc
Confidence 44445678999999999985
|
|
| >TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=98.96 E-value=6.5e-09 Score=107.75 Aligned_cols=149 Identities=21% Similarity=0.209 Sum_probs=97.2
Q ss_pred CcHHHHHHHHHHhc--------CCcEEEEecCCcchHHHHHHHHHHHH--hcCCeEEEEcccHHHHHHHHHHHHHhcc--
Q psy6275 58 LDPFQKEAILCIEN--------NQSVLVSAHTSAGKTVVAEYAIASSL--KQSQRVIYTTPIKALSNQKYREFEEQFK-- 125 (391)
Q Consensus 58 ~~~~Q~~~i~~i~~--------~~~~li~apTGsGKT~~~~~~~~~~l--~~~~~vlvl~P~~~L~~q~~~~~~~~~~-- 125 (391)
-+.||-+|+..+.. |--++-.|.||||||++=.-.+...- ..+.|..|-.-.|.|.-|+-+.+++..+
T Consensus 409 rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImyaLsd~~~g~RfsiALGLRTLTLQTGda~r~rL~L~ 488 (1110)
T TIGR02562 409 RFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMYALRDDKQGARFAIALGLRSLTLQTGHALKTRLNLS 488 (1110)
T ss_pred CcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHHHhCCCCCCceEEEEccccceeccchHHHHHhcCCC
Confidence 45799999987632 33477889999999998544433322 3356888888999999999998888776
Q ss_pred --cceeeeCCccc----------------------------------------------------CC------CCCEEEE
Q psy6275 126 --DVGLITGDVTI----------------------------------------------------NP------SSSCLIM 145 (391)
Q Consensus 126 --~v~~~~g~~~~----------------------------------------------------~~------~~~I~v~ 145 (391)
.+.++.|+... ++ .++++||
T Consensus 489 ~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~apv~V~ 568 (1110)
T TIGR02562 489 DDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAPVLVC 568 (1110)
T ss_pred ccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCCeEEe
Confidence 33443332110 00 1469999
Q ss_pred cHHHHHHHHh--cC-ccccC----ccceEEEecccccCccccchhHHHHHHHh-CCCCcEEEEcccCCCh
Q psy6275 146 TTEILRNMLY--RG-SEITR----EVGWVIFDEIHYMRDKERGYVWEETLILL-SDNVRFVFLSATIPNA 207 (391)
Q Consensus 146 Tp~~l~~~l~--~~-~~~l~----~~~~lViDE~h~~~~~~~~~~~~~i~~~~-~~~~~~i~~SAT~~~~ 207 (391)
|++.++.... +. ...+. .=+.||+||+|.+... ....+..++... ..+.++++||||+|..
T Consensus 569 TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~-~~~~L~rlL~w~~~lG~~VlLmSATLP~~ 637 (1110)
T TIGR02562 569 TIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPE-DLPALLRLVQLAGLLGSRVLLSSATLPPA 637 (1110)
T ss_pred cHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHH-HHHHHHHHHHHHHHcCCCEEEEeCCCCHH
Confidence 9999886652 21 11112 2358999999976432 223344444432 2468899999999876
|
The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc. |
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
Probab=98.94 E-value=2e-08 Score=102.62 Aligned_cols=69 Identities=26% Similarity=0.297 Sum_probs=55.0
Q ss_pred CCCCCcHHHHHHHHHHhc----C-CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy6275 54 YPFVLDPFQKEAILCIEN----N-QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK 125 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i~~----~-~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~ 125 (391)
..|.|+..|.++|..+.+ + +..++.|-||||||++....+ +. .+..+||++|.+.++.|++..++.++.
T Consensus 6 ~~~~~~~~Q~~ai~~l~~~~~~~~~~~~l~Gvtgs~kt~~~a~~~-~~--~~~p~Lvi~~n~~~A~ql~~el~~f~p 79 (655)
T TIGR00631 6 SPFQPAGDQPKAIAKLVEGLTDGEKHQTLLGVTGSGKTFTMANVI-AQ--VNRPTLVIAHNKTLAAQLYNEFKEFFP 79 (655)
T ss_pred cCCCCChHHHHHHHHHHHhhhcCCCcEEEECCCCcHHHHHHHHHH-HH--hCCCEEEEECCHHHHHHHHHHHHHhCC
Confidence 357899999999987633 3 366799999999999855433 32 256799999999999999999988865
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) |
| >PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.1e-08 Score=105.86 Aligned_cols=65 Identities=20% Similarity=0.228 Sum_probs=54.1
Q ss_pred CCCCcHHHHHHHHHH----hc-----CCcEEEEecCCcchHHHHHHHHHHHH-hcCCeEEEEcccHHHHHHHHHH
Q psy6275 55 PFVLDPFQKEAILCI----EN-----NQSVLVSAHTSAGKTVVAEYAIASSL-KQSQRVIYTTPIKALSNQKYRE 119 (391)
Q Consensus 55 ~~~~~~~Q~~~i~~i----~~-----~~~~li~apTGsGKT~~~~~~~~~~l-~~~~~vlvl~P~~~L~~q~~~~ 119 (391)
||++++-|.+-+..+ .+ ++.+++-||||+|||++|++|++.+. ..+.+|+|-+.|+.|-+|+..+
T Consensus 23 ~~e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~~~k~vVIST~T~~LQeQL~~k 97 (697)
T PRK11747 23 GFIPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARAEKKKLVISTATVALQEQLVSK 97 (697)
T ss_pred CCCcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHhh
Confidence 689999999976654 33 36789999999999999999987654 4688999999999999998643
|
|
| >PRK12903 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.3e-08 Score=100.77 Aligned_cols=121 Identities=16% Similarity=0.177 Sum_probs=83.7
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc----ccee
Q psy6275 54 YPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK----DVGL 129 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~----~v~~ 129 (391)
+|..|+++|.-.--.+..|+ +....||=|||+++.+|+.-....|..|=|+....-||..=+.++..++. .|++
T Consensus 75 lG~r~ydVQliGglvLh~G~--IAEMkTGEGKTLvAtLpayLnAL~GkgVhVVTvNdYLA~RDae~mg~vy~fLGLsvG~ 152 (925)
T PRK12903 75 LGKRPYDVQIIGGIILDLGS--VAEMKTGEGKTITSIAPVYLNALTGKGVIVSTVNEYLAERDAEEMGKVFNFLGLSVGI 152 (925)
T ss_pred hCCCcCchHHHHHHHHhcCC--eeeecCCCCccHHHHHHHHHHHhcCCceEEEecchhhhhhhHHHHHHHHHHhCCceee
Confidence 46678899988776666665 79999999999999888754434566677777778888766666666555 5555
Q ss_pred eeCCcccC-----CCCCEEEEcHHHH-HHHHhcC------ccccCccceEEEecccccC
Q psy6275 130 ITGDVTIN-----PSSSCLIMTTEIL-RNMLYRG------SEITREVGWVIFDEIHYMR 176 (391)
Q Consensus 130 ~~g~~~~~-----~~~~I~v~Tp~~l-~~~l~~~------~~~l~~~~~lViDE~h~~~ 176 (391)
...+.... -.++|+++|..-+ ++++... ..-.+.+.+.|+||+|.++
T Consensus 153 i~~~~~~~~rr~aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSIL 211 (925)
T PRK12903 153 NKANMDPNLKREAYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSIL 211 (925)
T ss_pred eCCCCChHHHHHhccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchhee
Confidence 55543322 2589999997543 3344322 1234678899999999763
|
|
| >KOG0385|consensus | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.8e-08 Score=97.69 Aligned_cols=146 Identities=17% Similarity=0.137 Sum_probs=105.5
Q ss_pred CCCCcHHHHHHHHHH----hcCCcEEEEecCCcchHHHH--HHHHHHHHhc-CCeEEEEcccHHHHHHHHHHHHHhcc--
Q psy6275 55 PFVLDPFQKEAILCI----ENNQSVLVSAHTSAGKTVVA--EYAIASSLKQ-SQRVIYTTPIKALSNQKYREFEEQFK-- 125 (391)
Q Consensus 55 ~~~~~~~Q~~~i~~i----~~~~~~li~apTGsGKT~~~--~~~~~~~l~~-~~~vlvl~P~~~L~~q~~~~~~~~~~-- 125 (391)
|..+++||.+.+..+ .+|-|.|+.-..|-|||+.. ++..+..... .+.-||++|...| ..|..+++++..
T Consensus 165 ~g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL-~NW~~Ef~rf~P~l 243 (971)
T KOG0385|consen 165 GGELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTL-DNWMNEFKRFTPSL 243 (971)
T ss_pred CCccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhH-HHHHHHHHHhCCCc
Confidence 356999999998865 56789999999999999854 3444444333 6789999997777 556789999998
Q ss_pred cceeeeCCccc----------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCC
Q psy6275 126 DVGLITGDVTI----------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNV 195 (391)
Q Consensus 126 ~v~~~~g~~~~----------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~ 195 (391)
++.+++|+... ....+|+|+|++..+.--.- ..--..+++||||||++-.. ...+..+++.+.. .
T Consensus 244 ~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~~--lk~~~W~ylvIDEaHRiKN~--~s~L~~~lr~f~~-~ 318 (971)
T KOG0385|consen 244 NVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKSF--LKKFNWRYLVIDEAHRIKNE--KSKLSKILREFKT-D 318 (971)
T ss_pred ceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHHH--HhcCCceEEEechhhhhcch--hhHHHHHHHHhcc-c
Confidence 56678887652 23679999999987643111 11116789999999999765 4455567777764 3
Q ss_pred cEEEEcccCCC
Q psy6275 196 RFVFLSATIPN 206 (391)
Q Consensus 196 ~~i~~SAT~~~ 206 (391)
..+++|+|+-.
T Consensus 319 nrLLlTGTPLQ 329 (971)
T KOG0385|consen 319 NRLLLTGTPLQ 329 (971)
T ss_pred ceeEeeCCccc
Confidence 45677888643
|
|
| >KOG0387|consensus | Back alignment and domain information |
|---|
Probab=98.80 E-value=4e-07 Score=90.92 Aligned_cols=144 Identities=20% Similarity=0.219 Sum_probs=100.3
Q ss_pred CcHHHHHHHHHH----hcCCcEEEEecCCcchHHHHH--HHHHHHH-hcCCeEEEEcccHHHHHHHHHHHHHhcc--cce
Q psy6275 58 LDPFQKEAILCI----ENNQSVLVSAHTSAGKTVVAE--YAIASSL-KQSQRVIYTTPIKALSNQKYREFEEQFK--DVG 128 (391)
Q Consensus 58 ~~~~Q~~~i~~i----~~~~~~li~apTGsGKT~~~~--~~~~~~l-~~~~~vlvl~P~~~L~~q~~~~~~~~~~--~v~ 128 (391)
+.++|++.+..+ ..+.-.|+--..|-|||...+ ++.+++- .-.+.+||+|| ..++.||.++|+.++. .+.
T Consensus 206 Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP-~Tii~qW~~E~~~w~p~~rv~ 284 (923)
T KOG0387|consen 206 LFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCP-ATIIHQWMKEFQTWWPPFRVF 284 (923)
T ss_pred hhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEcc-HHHHHHHHHHHHHhCcceEEE
Confidence 889999999876 345567999999999998543 2223321 23478999999 6788999999999998 666
Q ss_pred eeeCCccc--------------------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHH
Q psy6275 129 LITGDVTI--------------------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETL 188 (391)
Q Consensus 129 ~~~g~~~~--------------------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~ 188 (391)
+++|.... .....|+++|++.+.- ......--..+++|+||.|.+-.. ...+...+
T Consensus 285 ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~--~~d~l~~~~W~y~ILDEGH~IrNp--ns~islac 360 (923)
T KOG0387|consen 285 ILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRI--QGDDLLGILWDYVILDEGHRIRNP--NSKISLAC 360 (923)
T ss_pred EEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcc--cCcccccccccEEEecCcccccCC--ccHHHHHH
Confidence 67765441 1235699999987642 222222236899999999999765 33444455
Q ss_pred HHhCCCCcEEEEcccCCCh
Q psy6275 189 ILLSDNVRFVFLSATIPNA 207 (391)
Q Consensus 189 ~~~~~~~~~i~~SAT~~~~ 207 (391)
..++. .+.|++|+|+-..
T Consensus 361 kki~T-~~RiILSGTPiQN 378 (923)
T KOG0387|consen 361 KKIRT-VHRIILSGTPIQN 378 (923)
T ss_pred Hhccc-cceEEeeCccccc
Confidence 55654 6677889997554
|
|
| >PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.5e-07 Score=91.42 Aligned_cols=155 Identities=15% Similarity=0.200 Sum_probs=102.4
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHH-hcCCeEEEEcccHHHHHHHHHHHHHhcc--cceeeeCC-cccC-CCCCEEEEc
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSL-KQSQRVIYTTPIKALSNQKYREFEEQFK--DVGLITGD-VTIN-PSSSCLIMT 146 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l-~~~~~vlvl~P~~~L~~q~~~~~~~~~~--~v~~~~g~-~~~~-~~~~I~v~T 146 (391)
..-.++.||.|+|||.+..-++...+ .++.++|++...++|+.+...+++...- -+.....+ .... ...+-+++.
T Consensus 49 ~~V~vVRSpMGTGKTtaLi~wLk~~l~~~~~~VLvVShRrSL~~sL~~rf~~~~l~gFv~Y~d~~~~~i~~~~~~rLivq 128 (824)
T PF02399_consen 49 RGVLVVRSPMGTGKTTALIRWLKDALKNPDKSVLVVSHRRSLTKSLAERFKKAGLSGFVNYLDSDDYIIDGRPYDRLIVQ 128 (824)
T ss_pred CCeEEEECCCCCCcHHHHHHHHHHhccCCCCeEEEEEhHHHHHHHHHHHHhhcCCCcceeeeccccccccccccCeEEEE
Confidence 34578999999999998777766665 4578999999999999999999986642 11111111 1112 124556666
Q ss_pred HHHHHHHHhcCccccCccceEEEecccccCccccchhHH-------HHHHHhCCCCcEEEEcccCCCh-HHHHHHhcccc
Q psy6275 147 TEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWE-------ETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLH 218 (391)
Q Consensus 147 p~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~-------~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l~~~~ 218 (391)
.+.+.+.. ...+.++|+||+||+...+.+-+.+.++ .+...+.....+|+|-|++.+. -++.+.++ .
T Consensus 129 IdSL~R~~---~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~tvdFl~~~R--p 203 (824)
T PF02399_consen 129 IDSLHRLD---GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQTVDFLASCR--P 203 (824)
T ss_pred ehhhhhcc---cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHHHHHHHHhC--C
Confidence 66664432 2346689999999998765544433322 3334456778899999999765 44444432 3
Q ss_pred CCCeeEeeeCCCC
Q psy6275 219 HQPCHVVYTDYRP 231 (391)
Q Consensus 219 ~~~~~v~~~~~~~ 231 (391)
.++++++.+++..
T Consensus 204 ~~~i~vI~n~y~~ 216 (824)
T PF02399_consen 204 DENIHVIVNTYAS 216 (824)
T ss_pred CCcEEEEEeeeec
Confidence 5567777776554
|
It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication |
| >KOG1000|consensus | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.7e-07 Score=88.89 Aligned_cols=143 Identities=20% Similarity=0.227 Sum_probs=102.5
Q ss_pred CcHHHHHHHH-HHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc---cceeeeCC
Q psy6275 58 LDPFQKEAIL-CIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK---DVGLITGD 133 (391)
Q Consensus 58 ~~~~Q~~~i~-~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~---~v~~~~g~ 133 (391)
+-|+|.+.+. ++.+|..+++.-..|-|||..++..+ .........||++|. .+-..|.+.+.+++. .+.++.+.
T Consensus 199 LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA-~yyraEwplliVcPA-svrftWa~al~r~lps~~pi~vv~~~ 276 (689)
T KOG1000|consen 199 LLPFQREGVIFALERGGRILLADEMGLGKTIQALAIA-RYYRAEWPLLIVCPA-SVRFTWAKALNRFLPSIHPIFVVDKS 276 (689)
T ss_pred hCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHH-HHHhhcCcEEEEecH-HHhHHHHHHHHHhcccccceEEEecc
Confidence 7799999887 46778899999999999999864433 333456778999994 566778888888887 44445444
Q ss_pred cccC----CCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEcccCC
Q psy6275 134 VTIN----PSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIP 205 (391)
Q Consensus 134 ~~~~----~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 205 (391)
.... ....|.|.+++.+..+-..- .-..+.++|+||.|++-+. .......++..+..-.++|++|+|+.
T Consensus 277 ~D~~~~~~t~~~v~ivSye~ls~l~~~l--~~~~~~vvI~DEsH~Lk~s-ktkr~Ka~~dllk~akhvILLSGTPa 349 (689)
T KOG1000|consen 277 SDPLPDVCTSNTVAIVSYEQLSLLHDIL--KKEKYRVVIFDESHMLKDS-KTKRTKAATDLLKVAKHVILLSGTPA 349 (689)
T ss_pred cCCccccccCCeEEEEEHHHHHHHHHHH--hcccceEEEEechhhhhcc-chhhhhhhhhHHHHhhheEEecCCcc
Confidence 4332 34568999999876543221 1235899999999988553 34445566666666678999999975
|
|
| >PRK12900 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.7e-07 Score=96.93 Aligned_cols=118 Identities=17% Similarity=0.162 Sum_probs=74.1
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc----cceeee
Q psy6275 56 FVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK----DVGLIT 131 (391)
Q Consensus 56 ~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~----~v~~~~ 131 (391)
..|+++|--.--.+..|+ +.-+.||=|||+++.+|+.-..-.|..|=|+....-||..=.+++..++. .|+++.
T Consensus 137 m~~ydVQLiGgivLh~G~--IAEM~TGEGKTLvatlp~yLnAL~G~gVHvVTvNDYLA~RDaewm~p~y~flGLtVg~i~ 214 (1025)
T PRK12900 137 MVPYDVQLIGGIVLHSGK--ISEMATGEGKTLVSTLPTFLNALTGRGVHVVTVNDYLAQRDKEWMNPVFEFHGLSVGVIL 214 (1025)
T ss_pred ccccchHHhhhHHhhcCC--ccccCCCCCcchHhHHHHHHHHHcCCCcEEEeechHhhhhhHHHHHHHHHHhCCeeeeeC
Confidence 457777776655666665 88999999999999888644434455555555666676554555554444 566654
Q ss_pred CCcccC-----CCCCEEEEcHHHH-HHHHhcC------ccccCccceEEEeccccc
Q psy6275 132 GDVTIN-----PSSSCLIMTTEIL-RNMLYRG------SEITREVGWVIFDEIHYM 175 (391)
Q Consensus 132 g~~~~~-----~~~~I~v~Tp~~l-~~~l~~~------~~~l~~~~~lViDE~h~~ 175 (391)
.+.... -.++|+++|..-+ +++|..+ ..-.+.+.+.|+||+|.+
T Consensus 215 ~~~~~~~Rr~aY~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvDSv 270 (1025)
T PRK12900 215 NTMRPEERREQYLCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVDSV 270 (1025)
T ss_pred CCCCHHHHHHhCCCcceecCCCccccccchhccccchhhhhccCCceEEEechhhh
Confidence 443321 2578999997432 2233221 122357889999999975
|
|
| >PRK05298 excinuclease ABC subunit B; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=8.3e-07 Score=91.31 Aligned_cols=70 Identities=23% Similarity=0.247 Sum_probs=55.2
Q ss_pred cCCCCCcHHHHHHHHHHhc----C-CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy6275 53 EYPFVLDPFQKEAILCIEN----N-QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK 125 (391)
Q Consensus 53 ~~~~~~~~~Q~~~i~~i~~----~-~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~ 125 (391)
..+|.|++.|..++..+.+ + +..++.|.+|+|||+.+.. +... .+..+||++|+...+.++++.+..+++
T Consensus 8 ~~~~~~~~~Q~~ai~~l~~~~~~~~~~~ll~Gl~gs~ka~lia~-l~~~--~~r~vLIVt~~~~~A~~l~~dL~~~~~ 82 (652)
T PRK05298 8 VSPYKPAGDQPQAIEELVEGIEAGEKHQTLLGVTGSGKTFTMAN-VIAR--LQRPTLVLAHNKTLAAQLYSEFKEFFP 82 (652)
T ss_pred ccCCCCChHHHHHHHHHHHhhhcCCCcEEEEcCCCcHHHHHHHH-HHHH--hCCCEEEEECCHHHHHHHHHHHHHhcC
Confidence 3467899999999997632 2 2577999999999987543 2222 256799999999999999999988865
|
|
| >PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.7e-07 Score=81.85 Aligned_cols=121 Identities=16% Similarity=0.156 Sum_probs=72.9
Q ss_pred CcHHHHHHHHHHhc-C-CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcc
Q psy6275 58 LDPFQKEAILCIEN-N-QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVT 135 (391)
Q Consensus 58 ~~~~Q~~~i~~i~~-~-~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~ 135 (391)
+++-|.+++..+.. + +-.++.||.|+|||.+...........+.++++++||...+..+.+....
T Consensus 2 L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~------------- 68 (196)
T PF13604_consen 2 LNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGI------------- 68 (196)
T ss_dssp S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-------------
T ss_pred CCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCc-------------
Confidence 68899999998853 3 35778899999999875443333334578999999999998887655321
Q ss_pred cCCCCCEEEEcHHHHHHHHhcCc----cccCccceEEEecccccCccccchhHHHHHHHhCC-CCcEEEEcc
Q psy6275 136 INPSSSCLIMTTEILRNMLYRGS----EITREVGWVIFDEIHYMRDKERGYVWEETLILLSD-NVRFVFLSA 202 (391)
Q Consensus 136 ~~~~~~I~v~Tp~~l~~~l~~~~----~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~-~~~~i~~SA 202 (391)
-..|-..++....... ..+...+++|+||+-.+. ...+..++...+. +.+++++.=
T Consensus 69 -------~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~----~~~~~~ll~~~~~~~~klilvGD 129 (196)
T PF13604_consen 69 -------EAQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVD----SRQLARLLRLAKKSGAKLILVGD 129 (196)
T ss_dssp --------EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-B----HHHHHHHHHHS-T-T-EEEEEE-
T ss_pred -------chhhHHHHHhcCCcccccccccCCcccEEEEecccccC----HHHHHHHHHHHHhcCCEEEEECC
Confidence 1122222221111100 014567899999999874 3456667776665 566666543
|
|
| >smart00488 DEXDc2 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=98.66 E-value=9.4e-08 Score=88.54 Aligned_cols=71 Identities=17% Similarity=0.317 Sum_probs=59.3
Q ss_pred CCCCCcHHHHHHHH----HHhcCCcEEEEecCCcchHHHHHHHHHHHHhc-CC-----eEEEEcccHHHHHHHHHHHHHh
Q psy6275 54 YPFVLDPFQKEAIL----CIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ-SQ-----RVIYTTPIKALSNQKYREFEEQ 123 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~----~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~-~~-----~vlvl~P~~~L~~q~~~~~~~~ 123 (391)
++|+|+|.|.+.+. .+.+++++++.||||+|||++++.|++.++.. +. +++|.++|..+..|....+++.
T Consensus 5 FPy~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 5 FPYEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 67889999999554 45678999999999999999999999876543 33 8999999999999988877765
Q ss_pred c
Q psy6275 124 F 124 (391)
Q Consensus 124 ~ 124 (391)
.
T Consensus 85 ~ 85 (289)
T smart00488 85 M 85 (289)
T ss_pred c
Confidence 3
|
|
| >smart00489 DEXDc3 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=98.66 E-value=9.4e-08 Score=88.54 Aligned_cols=71 Identities=17% Similarity=0.317 Sum_probs=59.3
Q ss_pred CCCCCcHHHHHHHH----HHhcCCcEEEEecCCcchHHHHHHHHHHHHhc-CC-----eEEEEcccHHHHHHHHHHHHHh
Q psy6275 54 YPFVLDPFQKEAIL----CIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ-SQ-----RVIYTTPIKALSNQKYREFEEQ 123 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~----~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~-~~-----~vlvl~P~~~L~~q~~~~~~~~ 123 (391)
++|+|+|.|.+.+. .+.+++++++.||||+|||++++.|++.++.. +. +++|.++|..+..|....+++.
T Consensus 5 FPy~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 5 FPYEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 67889999999554 45678999999999999999999999876543 33 8999999999999988877765
Q ss_pred c
Q psy6275 124 F 124 (391)
Q Consensus 124 ~ 124 (391)
.
T Consensus 85 ~ 85 (289)
T smart00489 85 M 85 (289)
T ss_pred c
Confidence 3
|
|
| >KOG0953|consensus | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.6e-07 Score=90.33 Aligned_cols=109 Identities=24% Similarity=0.413 Sum_probs=86.4
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCC-----CCCEEEE
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINP-----SSSCLIM 145 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~-----~~~I~v~ 145 (391)
..+-++-+|||.||||.- +++.+....+.+|.-|.|-||.+++++++...-.+.+++|...... .++.+-|
T Consensus 190 ~RkIi~H~GPTNSGKTy~----ALqrl~~aksGvycGPLrLLA~EV~~r~na~gipCdL~TGeE~~~~~~~~~~a~hvSc 265 (700)
T KOG0953|consen 190 RRKIIMHVGPTNSGKTYR----ALQRLKSAKSGVYCGPLRLLAHEVYDRLNALGIPCDLLTGEERRFVLDNGNPAQHVSC 265 (700)
T ss_pred hheEEEEeCCCCCchhHH----HHHHHhhhccceecchHHHHHHHHHHHhhhcCCCccccccceeeecCCCCCcccceEE
Confidence 345578899999999964 4566666788999999999999999999999889999999766432 3567777
Q ss_pred cHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHh
Q psy6275 146 TTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILL 191 (391)
Q Consensus 146 Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~ 191 (391)
|-|+.. --..+++.|+||+++|.|..+|..|...+--+
T Consensus 266 TVEM~s--------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl 303 (700)
T KOG0953|consen 266 TVEMVS--------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGL 303 (700)
T ss_pred EEEEee--------cCCceEEEEehhHHhhcCcccchHHHHHHHhh
Confidence 776542 12368999999999999999999988655433
|
|
| >PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.5e-07 Score=82.08 Aligned_cols=125 Identities=21% Similarity=0.282 Sum_probs=88.9
Q ss_pred cCCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc----cce
Q psy6275 53 EYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK----DVG 128 (391)
Q Consensus 53 ~~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~----~v~ 128 (391)
..|+.|++.|.-+.-.+..|+ ++...||=|||++..+++.-..-.|..|=|++.+.-|+..=++.+..++. .++
T Consensus 73 ~~g~~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~G~~V~vvT~NdyLA~RD~~~~~~~y~~LGlsv~ 150 (266)
T PF07517_consen 73 TLGLRPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQGKGVHVVTSNDYLAKRDAEEMRPFYEFLGLSVG 150 (266)
T ss_dssp HTS----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTTSS-EEEEESSHHHHHHHHHHHHHHHHHTT--EE
T ss_pred HcCCcccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHhcCCcEEEeccHHHhhccHHHHHHHHHHhhhccc
Confidence 457789999999997777766 99999999999998777655555788899999999999888888887776 566
Q ss_pred eeeCCcccCC-----CCCEEEEcHHHHH-HHHhc----Ccc--ccCccceEEEecccccC-ccc
Q psy6275 129 LITGDVTINP-----SSSCLIMTTEILR-NMLYR----GSE--ITREVGWVIFDEIHYMR-DKE 179 (391)
Q Consensus 129 ~~~g~~~~~~-----~~~I~v~Tp~~l~-~~l~~----~~~--~l~~~~~lViDE~h~~~-~~~ 179 (391)
...++.+... +++|+++|...+. +++.. ... ..+.++++|+||+|.++ |..
T Consensus 151 ~~~~~~~~~~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~LiDea 214 (266)
T PF07517_consen 151 IITSDMSSEERREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSILIDEA 214 (266)
T ss_dssp EEETTTEHHHHHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHTTTGC
T ss_pred cCccccCHHHHHHHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEEEecC
Confidence 6666654322 4789999997654 33332 111 25789999999999763 443
|
SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A .... |
| >KOG1803|consensus | Back alignment and domain information |
|---|
Probab=98.54 E-value=5.1e-07 Score=88.01 Aligned_cols=67 Identities=22% Similarity=0.249 Sum_probs=59.3
Q ss_pred CCCCcHHHHHHHHHHhcC-CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHH
Q psy6275 55 PFVLDPFQKEAILCIENN-QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFE 121 (391)
Q Consensus 55 ~~~~~~~Q~~~i~~i~~~-~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~ 121 (391)
+..+.+.|.+|+....+. .-.++.||+|+|||.+....+.+.+.++.+|||.+||.+-++.+.+++.
T Consensus 183 ~~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 183 NKNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred CccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHcCCeEEEEcCchHHHHHHHHHhc
Confidence 335999999999987666 4578999999999999999999999999999999999999999988755
|
|
| >PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.3e-06 Score=91.04 Aligned_cols=130 Identities=17% Similarity=0.228 Sum_probs=81.4
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHhc--CCeEEEEcccHHHHHHHHHHHH-----Hhcc--------cceeeeCCc---
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLKQ--SQRVIYTTPIKALSNQKYREFE-----EQFK--------DVGLITGDV--- 134 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~~--~~~vlvl~P~~~L~~q~~~~~~-----~~~~--------~v~~~~g~~--- 134 (391)
.++.+.++||+|||.+|+-.++..... -.+.||+||+.+....+...+. ..+. ...++.+..
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~k 139 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKYGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKKK 139 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCcccc
Confidence 579999999999999998888776654 3689999999988877775554 1121 111232221
Q ss_pred ----c-c--------CC-----CCCEEEEcHHHHHHHHh--c--------Cc-cccCcc----ceEEEecccccCccccc
Q psy6275 135 ----T-I--------NP-----SSSCLIMTTEILRNMLY--R--------GS-EITREV----GWVIFDEIHYMRDKERG 181 (391)
Q Consensus 135 ----~-~--------~~-----~~~I~v~Tp~~l~~~l~--~--------~~-~~l~~~----~~lViDE~h~~~~~~~~ 181 (391)
. . +. .-.|+|+|.+.+..-.. . +. ..+..+ -.||+||.|++... +
T Consensus 140 ~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~~--~ 217 (986)
T PRK15483 140 SGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPRD--N 217 (986)
T ss_pred cccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCcc--h
Confidence 0 0 01 34789999987764211 0 00 111111 27999999998543 3
Q ss_pred hhHHHHHHHhCCCCcEEEEcccCCC
Q psy6275 182 YVWEETLILLSDNVRFVFLSATIPN 206 (391)
Q Consensus 182 ~~~~~i~~~~~~~~~~i~~SAT~~~ 206 (391)
..++.+ ..+.+ .-++.+|||.+.
T Consensus 218 k~~~~i-~~lnp-l~~lrysAT~~~ 240 (986)
T PRK15483 218 KFYQAI-EALKP-QMIIRFGATFPD 240 (986)
T ss_pred HHHHHH-HhcCc-ccEEEEeeecCC
Confidence 456555 33433 235779999976
|
|
| >KOG0390|consensus | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.3e-06 Score=86.01 Aligned_cols=145 Identities=20% Similarity=0.255 Sum_probs=98.1
Q ss_pred CCcHHHHHHHHHHh----------cCCcEEEEecCCcchHHHHHHHHHHHHhc--C-----CeEEEEcccHHHHHHHHHH
Q psy6275 57 VLDPFQKEAILCIE----------NNQSVLVSAHTSAGKTVVAEYAIASSLKQ--S-----QRVIYTTPIKALSNQKYRE 119 (391)
Q Consensus 57 ~~~~~Q~~~i~~i~----------~~~~~li~apTGsGKT~~~~~~~~~~l~~--~-----~~vlvl~P~~~L~~q~~~~ 119 (391)
.++|+|.+.+.-+. ...-++++=.+|+|||+..+..+-..+.+ + .+.||++| ..|+..|.++
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P-~sLv~nWkkE 316 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAP-SSLVNNWKKE 316 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEcc-HHHHHHHHHH
Confidence 49999999998552 12246777788999999765544444433 4 67999999 7899999999
Q ss_pred HHHhcc--ccee--eeCCccc--------------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccc
Q psy6275 120 FEEQFK--DVGL--ITGDVTI--------------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERG 181 (391)
Q Consensus 120 ~~~~~~--~v~~--~~g~~~~--------------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~ 181 (391)
|.++.. .+.. +.|.... .-...+++.+++.+......- ....++++|+||.|.+-.. .
T Consensus 317 F~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~i--l~~~~glLVcDEGHrlkN~--~ 392 (776)
T KOG0390|consen 317 FGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRKI--LLIRPGLLVCDEGHRLKNS--D 392 (776)
T ss_pred HHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHHH--hcCCCCeEEECCCCCccch--h
Confidence 999987 2222 3333331 012357788888887555432 3458999999999997543 3
Q ss_pred hhHHHHHHHhCCCCcEEEEcccCCCh
Q psy6275 182 YVWEETLILLSDNVRFVFLSATIPNA 207 (391)
Q Consensus 182 ~~~~~i~~~~~~~~~~i~~SAT~~~~ 207 (391)
..+...+..+.. .+.|++|+|+-+.
T Consensus 393 s~~~kaL~~l~t-~rRVLLSGTp~QN 417 (776)
T KOG0390|consen 393 SLTLKALSSLKT-PRRVLLTGTPIQN 417 (776)
T ss_pred hHHHHHHHhcCC-CceEEeeCCcccc
Confidence 344445555554 5567889997543
|
|
| >TIGR01447 recD exodeoxyribonuclease V, alpha subunit | Back alignment and domain information |
|---|
Probab=98.39 E-value=4.1e-06 Score=84.76 Aligned_cols=138 Identities=13% Similarity=0.136 Sum_probs=87.4
Q ss_pred cHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHH--HHHHHhc---CCeEEEEcccHHHHHHHHHHHHHhcccceeeeCC
Q psy6275 59 DPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYA--IASSLKQ---SQRVIYTTPIKALSNQKYREFEEQFKDVGLITGD 133 (391)
Q Consensus 59 ~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~--~~~~l~~---~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~ 133 (391)
.++|+.|+..+..++..+++|++|+|||++.... .+..... ..++++.+||..-+..+.+............
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~--- 223 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAAA--- 223 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcccccc---
Confidence 3799999999999999999999999999975332 2222221 2589999999988888777766543322110
Q ss_pred cccCCCCCEEEEcHHHHHHHHhc------CccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEccc
Q psy6275 134 VTINPSSSCLIMTTEILRNMLYR------GSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSAT 203 (391)
Q Consensus 134 ~~~~~~~~I~v~Tp~~l~~~l~~------~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 203 (391)
........+-..|-.+++..... .....-.+++||+||+-++. ...+..++..++...++|++.=.
T Consensus 224 ~~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd----~~l~~~ll~al~~~~rlIlvGD~ 295 (586)
T TIGR01447 224 EALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD----LPLMAKLLKALPPNTKLILLGDK 295 (586)
T ss_pred hhhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC----HHHHHHHHHhcCCCCEEEEECCh
Confidence 00000111223444444432211 11122368999999998763 34667788888888888887544
|
This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model. |
| >KOG0389|consensus | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.7e-06 Score=86.49 Aligned_cols=157 Identities=14% Similarity=0.195 Sum_probs=107.0
Q ss_pred cCCCCCcHHHHHHHHHH----hcCCcEEEEecCCcchHHHH--HHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc-
Q psy6275 53 EYPFVLDPFQKEAILCI----ENNQSVLVSAHTSAGKTVVA--EYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK- 125 (391)
Q Consensus 53 ~~~~~~~~~Q~~~i~~i----~~~~~~li~apTGsGKT~~~--~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~- 125 (391)
.-|+++.+||.-.+..+ ..+-+.|+.-..|-|||... .++.+......+.=||+||...| +.|..+|.+++.
T Consensus 395 ~s~i~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq~g~~gpHLVVvPsSTl-eNWlrEf~kwCPs 473 (941)
T KOG0389|consen 395 SSGIQLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQIGNPGPHLVVVPSSTL-ENWLREFAKWCPS 473 (941)
T ss_pred CCCCcccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHHcCCCCCcEEEecchhH-HHHHHHHHHhCCc
Confidence 44677999999988865 35667899999999999854 34455555556778899998877 556789999998
Q ss_pred -cceeeeCCccc-----------CCCCCEEEEcHHHHHHHHhcCccc--cCccceEEEecccccCccccchhHHHHHHHh
Q psy6275 126 -DVGLITGDVTI-----------NPSSSCLIMTTEILRNMLYRGSEI--TREVGWVIFDEIHYMRDKERGYVWEETLILL 191 (391)
Q Consensus 126 -~v~~~~g~~~~-----------~~~~~I~v~Tp~~l~~~l~~~~~~--l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~ 191 (391)
.|..++|.... ....+|+++|+..+..--. ...+ -.+++++|+||.|.+-+. ....+..++...
T Consensus 474 l~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kd-DRsflk~~~~n~viyDEgHmLKN~-~SeRy~~LM~I~ 551 (941)
T KOG0389|consen 474 LKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKD-DRSFLKNQKFNYVIYDEGHMLKNR-TSERYKHLMSIN 551 (941)
T ss_pred eEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChH-HHHHHHhccccEEEecchhhhhcc-chHHHHHhcccc
Confidence 55557775442 1257899999975542110 1112 237899999999987553 355566666543
Q ss_pred CCCCcEEEEcccCCCh--HHHHHHh
Q psy6275 192 SDNVRFVFLSATIPNA--SQFAQWV 214 (391)
Q Consensus 192 ~~~~~~i~~SAT~~~~--~~~~~~l 214 (391)
....+++|+|+-.. .++...|
T Consensus 552 --An~RlLLTGTPLQNNL~ELiSLL 574 (941)
T KOG0389|consen 552 --ANFRLLLTGTPLQNNLKELISLL 574 (941)
T ss_pred --ccceEEeeCCcccccHHHHHHHH
Confidence 35678899997654 4444433
|
|
| >PRK10875 recD exonuclease V subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=4.2e-06 Score=84.89 Aligned_cols=139 Identities=14% Similarity=0.111 Sum_probs=88.6
Q ss_pred CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHH--HHHHh--cCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCC
Q psy6275 58 LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAI--ASSLK--QSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGD 133 (391)
Q Consensus 58 ~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~--~~~l~--~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~ 133 (391)
..++|+.|+.....++-.++.|++|+|||++....+ +.... ...++++.+||..-+..+.+.+.......... ..
T Consensus 153 ~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~-~~ 231 (615)
T PRK10875 153 EVDWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLT-DE 231 (615)
T ss_pred CCHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccc-hh
Confidence 358999999988888999999999999998753332 22222 23579999999998888887776544322211 00
Q ss_pred cccCCCCCEEEEcHHHHHHHHhc------CccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEccc
Q psy6275 134 VTINPSSSCLIMTTEILRNMLYR------GSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSAT 203 (391)
Q Consensus 134 ~~~~~~~~I~v~Tp~~l~~~l~~------~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 203 (391)
.......-..|-.+++..... .....-.++++|+||+-++. ...+..++..++...++|++.=.
T Consensus 232 --~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd----~~lm~~ll~al~~~~rlIlvGD~ 301 (615)
T PRK10875 232 --QKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD----LPMMARLIDALPPHARVIFLGDR 301 (615)
T ss_pred --hhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc----HHHHHHHHHhcccCCEEEEecch
Confidence 000111123344444432111 11122357999999998763 44666788888888888887544
|
|
| >TIGR01448 recD_rel helicase, putative, RecD/TraA family | Back alignment and domain information |
|---|
Probab=98.35 E-value=4.3e-06 Score=86.88 Aligned_cols=127 Identities=19% Similarity=0.141 Sum_probs=83.6
Q ss_pred ccCCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh-cC--CeEEEEcccHHHHHHHHHHHHHhcccce
Q psy6275 52 REYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK-QS--QRVIYTTPIKALSNQKYREFEEQFKDVG 128 (391)
Q Consensus 52 ~~~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~-~~--~~vlvl~P~~~L~~q~~~~~~~~~~~v~ 128 (391)
...++.+++-|++|+..+..++.+++.|++|+|||++.- .++..+. .+ ..+++++||...+..+.+.... .
T Consensus 318 ~~~~~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~-~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~---~-- 391 (720)
T TIGR01448 318 KKLRKGLSEEQKQALDTAIQHKVVILTGGPGTGKTTITR-AIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGL---T-- 391 (720)
T ss_pred HhcCCCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHH-HHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCC---c--
Confidence 345778999999999999888899999999999998753 2233332 34 6788999998887655332110 0
Q ss_pred eeeCCcccCCCCCEEEEcHHHHHHHHhcC-----ccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEccc
Q psy6275 129 LITGDVTINPSSSCLIMTTEILRNMLYRG-----SEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSAT 203 (391)
Q Consensus 129 ~~~g~~~~~~~~~I~v~Tp~~l~~~l~~~-----~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 203 (391)
-.|-.+++.+.... .......+++|+||++++. ...+..++..++.+.++|++.=.
T Consensus 392 ---------------a~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMvd----~~~~~~Ll~~~~~~~rlilvGD~ 452 (720)
T TIGR01448 392 ---------------ASTIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMMD----TWLALSLLAALPDHARLLLVGDT 452 (720)
T ss_pred ---------------cccHHHHhhccCCccchhhhhccccCCEEEEeccccCC----HHHHHHHHHhCCCCCEEEEECcc
Confidence 11223332211110 0112367899999999874 33556777778878888886544
|
This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. |
| >PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.8e-06 Score=75.05 Aligned_cols=124 Identities=22% Similarity=0.309 Sum_probs=68.9
Q ss_pred CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcC--CeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcc
Q psy6275 58 LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQS--QRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVT 135 (391)
Q Consensus 58 ~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~--~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~ 135 (391)
.+..|..++.++.+.+.+++.||.|+|||+.++...++.+..+ .+++|+-|..+... .++.+.|+..
T Consensus 5 ~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~-----------~lGflpG~~~ 73 (205)
T PF02562_consen 5 KNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGE-----------DLGFLPGDLE 73 (205)
T ss_dssp -SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT---------------SS-----
T ss_pred CCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCcc-----------ccccCCCCHH
Confidence 6789999999999888999999999999999988888887654 48888878765422 2333333322
Q ss_pred cCC-------------------------CCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHH
Q psy6275 136 INP-------------------------SSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLIL 190 (391)
Q Consensus 136 ~~~-------------------------~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~ 190 (391)
..- +..|-+.....+ ++.. + +-.+||+|||+.+. ...+..++.+
T Consensus 74 eK~~p~~~p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~i-----RGrt-~-~~~~iIvDEaQN~t----~~~~k~ilTR 142 (205)
T PF02562_consen 74 EKMEPYLRPIYDALEELFGKEKLEELIQNGKIEIEPLAFI-----RGRT-F-DNAFIIVDEAQNLT----PEELKMILTR 142 (205)
T ss_dssp ----TTTHHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGG-----TT---B--SEEEEE-SGGG------HHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhChHhHHHHhhcCeEEEEehhhh-----cCcc-c-cceEEEEecccCCC----HHHHHHHHcc
Confidence 110 122333333211 1111 2 23799999999764 3466677888
Q ss_pred hCCCCcEEEEccc
Q psy6275 191 LSDNVRFVFLSAT 203 (391)
Q Consensus 191 ~~~~~~~i~~SAT 203 (391)
++.+.+++++.-.
T Consensus 143 ~g~~skii~~GD~ 155 (205)
T PF02562_consen 143 IGEGSKIIITGDP 155 (205)
T ss_dssp B-TT-EEEEEE--
T ss_pred cCCCcEEEEecCc
Confidence 8888888776433
|
; GO: 0005524 ATP binding; PDB: 3B85_A. |
| >PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.6e-06 Score=80.51 Aligned_cols=93 Identities=16% Similarity=0.218 Sum_probs=65.9
Q ss_pred cEEEEecCCcchHHHHHHHHHHH--HhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASS--LKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILR 151 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~--l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l~ 151 (391)
.++|.|.+|||||+.++..+... ...+.+++++++..+|...+...+.... ........+..+..+.
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~-----------~~~~~~~~~~~~~~~i 71 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKY-----------NPKLKKSDFRKPTSFI 71 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhhc-----------ccchhhhhhhhhHHHH
Confidence 57899999999999887666665 5668899999999999998887776643 0111223344444444
Q ss_pred HHHhcCccccCccceEEEecccccCc
Q psy6275 152 NMLYRGSEITREVGWVIFDEIHYMRD 177 (391)
Q Consensus 152 ~~l~~~~~~l~~~~~lViDE~h~~~~ 177 (391)
............++++|+||||.+.+
T Consensus 72 ~~~~~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 72 NNYSESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred hhcccccccCCcCCEEEEehhHhhhh
Confidence 33332233456899999999999876
|
It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation []. |
| >PF13245 AAA_19: Part of AAA domain | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.9e-06 Score=61.73 Aligned_cols=56 Identities=21% Similarity=0.320 Sum_probs=43.2
Q ss_pred HHH-HHhcCCcEEEEecCCcchHHHHHHHHHHHHhc----CCeEEEEcccHHHHHHHHHHH
Q psy6275 65 AIL-CIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ----SQRVIYTTPIKALSNQKYREF 120 (391)
Q Consensus 65 ~i~-~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~----~~~vlvl~P~~~L~~q~~~~~ 120 (391)
++. .+..+.-+++.||+|+|||.+..-.+...+.. +.++++++|++..++++.+++
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 344 33324456679999999998776666666644 789999999999999998887
|
|
| >KOG1002|consensus | Back alignment and domain information |
|---|
Probab=98.29 E-value=8.8e-06 Score=77.50 Aligned_cols=148 Identities=18% Similarity=0.227 Sum_probs=98.5
Q ss_pred CCCCcHHHHHHHHHHhcC-----CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc---c
Q psy6275 55 PFVLDPFQKEAILCIENN-----QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK---D 126 (391)
Q Consensus 55 ~~~~~~~Q~~~i~~i~~~-----~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~---~ 126 (391)
-..+-|+|.+.+..+... ...++.-..|.|||...+..++..+ .+...||++|+.+| .|+.+++....+ +
T Consensus 182 ii~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~-~ra~tLVvaP~VAl-mQW~nEI~~~T~gslk 259 (791)
T KOG1002|consen 182 IIPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEV-DRAPTLVVAPTVAL-MQWKNEIERHTSGSLK 259 (791)
T ss_pred eecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhcc-ccCCeeEEccHHHH-HHHHHHHHHhccCceE
Confidence 345889999998766432 2357888999999998776666643 34569999999988 567777777766 5
Q ss_pred ceeeeCCcccC-----CCCCEEEEcHHHHHHHHhcC-------------ccccCc--cceEEEecccccCccccchhHHH
Q psy6275 127 VGLITGDVTIN-----PSSSCLIMTTEILRNMLYRG-------------SEITRE--VGWVIFDEIHYMRDKERGYVWEE 186 (391)
Q Consensus 127 v~~~~g~~~~~-----~~~~I~v~Tp~~l~~~l~~~-------------~~~l~~--~~~lViDE~h~~~~~~~~~~~~~ 186 (391)
+-+.+|..... ...+++.+|+..+.+...+. ...+.+ +--+|+||||.+-+. .......
T Consensus 260 v~~YhG~~R~~nikel~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~IK~R-~snTArA 338 (791)
T KOG1002|consen 260 VYIYHGAKRDKNIKELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNIKDR-QSNTARA 338 (791)
T ss_pred EEEEecccccCCHHHhhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhcccccc-cccHHHH
Confidence 66677765432 25789999998877655431 112223 446999999988653 2222233
Q ss_pred HHHHhCCCCcEEEEcccCCCh
Q psy6275 187 TLILLSDNVRFVFLSATIPNA 207 (391)
Q Consensus 187 i~~~~~~~~~~i~~SAT~~~~ 207 (391)
+.. +.. .....+|+|+-..
T Consensus 339 V~~-L~t-t~rw~LSGTPLQN 357 (791)
T KOG1002|consen 339 VFA-LET-TYRWCLSGTPLQN 357 (791)
T ss_pred HHh-hHh-hhhhhccCCcchh
Confidence 332 322 3456889997654
|
|
| >PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.8e-05 Score=72.06 Aligned_cols=148 Identities=21% Similarity=0.212 Sum_probs=96.5
Q ss_pred CcHHHHHHHHHHh----------cCCcEEEEecCCcchHHHHHHHHHHHHhc-CCeEEEEcccHHHHHHHHHHHHHhccc
Q psy6275 58 LDPFQKEAILCIE----------NNQSVLVSAHTSAGKTVVAEYAIASSLKQ-SQRVIYTTPIKALSNQKYREFEEQFKD 126 (391)
Q Consensus 58 ~~~~Q~~~i~~i~----------~~~~~li~apTGsGKT~~~~~~~~~~l~~-~~~vlvl~P~~~L~~q~~~~~~~~~~~ 126 (391)
+...|-+++-... .+.-+++-=.||.||-....-.+++...+ ..+.|++..+..|..+..+.++.+...
T Consensus 38 LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS~s~dL~~Da~RDl~DIG~~ 117 (303)
T PF13872_consen 38 LSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRKRAVWVSVSNDLKYDAERDLRDIGAD 117 (303)
T ss_pred ccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCCceEEEECChhhhhHHHHHHHHhCCC
Confidence 8899999885432 23457888899999988766556555444 457999999999999999999988761
Q ss_pred -cee-----eeCCcccCCCCCEEEEcHHHHHHHHhcC---cccc--------C-ccceEEEecccccCccccc-------
Q psy6275 127 -VGL-----ITGDVTINPSSSCLIMTTEILRNMLYRG---SEIT--------R-EVGWVIFDEIHYMRDKERG------- 181 (391)
Q Consensus 127 -v~~-----~~g~~~~~~~~~I~v~Tp~~l~~~l~~~---~~~l--------~-~~~~lViDE~h~~~~~~~~------- 181 (391)
+.+ +.-+....-+..|+++|+..|...-... ...+ . .=.+||+||||.+.....+
T Consensus 118 ~i~v~~l~~~~~~~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~ 197 (303)
T PF13872_consen 118 NIPVHPLNKFKYGDIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKT 197 (303)
T ss_pred cccceechhhccCcCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCccCccccHH
Confidence 111 1111112234569999998887654321 1111 1 2249999999998544221
Q ss_pred -hhHHHHHHHhCCCCcEEEEcccCCC
Q psy6275 182 -YVWEETLILLSDNVRFVFLSATIPN 206 (391)
Q Consensus 182 -~~~~~i~~~~~~~~~~i~~SAT~~~ 206 (391)
.....+...+| +.+++.+|||-..
T Consensus 198 g~avl~LQ~~LP-~ARvvY~SATgas 222 (303)
T PF13872_consen 198 GIAVLELQNRLP-NARVVYASATGAS 222 (303)
T ss_pred HHHHHHHHHhCC-CCcEEEecccccC
Confidence 22333444554 5779999999643
|
|
| >PRK06835 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.8e-05 Score=74.42 Aligned_cols=60 Identities=22% Similarity=0.246 Sum_probs=40.3
Q ss_pred CCcHHHHHHHHHH----h----cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHH
Q psy6275 57 VLDPFQKEAILCI----E----NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKY 117 (391)
Q Consensus 57 ~~~~~Q~~~i~~i----~----~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~ 117 (391)
.++..+.+++... . .++++++.||||+|||..+...+...+..+..|+++ +..+|..++.
T Consensus 160 ~~~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~-t~~~l~~~l~ 227 (329)
T PRK06835 160 SPRKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYR-TADELIEILR 227 (329)
T ss_pred CHHHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEE-EHHHHHHHHH
Confidence 3555555665522 1 458899999999999997665555566667777665 5566655553
|
|
| >PRK10536 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.2e-05 Score=70.36 Aligned_cols=136 Identities=20% Similarity=0.244 Sum_probs=80.0
Q ss_pred CCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHH-hcC-CeEEEEcccHHHHH-------HHHHHHHHh
Q psy6275 54 YPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSL-KQS-QRVIYTTPIKALSN-------QKYREFEEQ 123 (391)
Q Consensus 54 ~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l-~~~-~~vlvl~P~~~L~~-------q~~~~~~~~ 123 (391)
.++. .+..|...+..+.++..+++.||+|+|||+.+....++.+ ... .++++.-|+.+..+ ...+++..+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK~~p~ 134 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEKFAPY 134 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHHHHHH
Confidence 3445 7889999999998888999999999999999877777655 333 45666656643221 111222222
Q ss_pred cc----cceeeeCCcccC-----CCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCC
Q psy6275 124 FK----DVGLITGDVTIN-----PSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDN 194 (391)
Q Consensus 124 ~~----~v~~~~g~~~~~-----~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~ 194 (391)
+. ....+.|..... ....|-|.... ++.... + +-++||+|||+.+. ...+..++..++.+
T Consensus 135 ~~pi~D~L~~~~~~~~~~~~~~~~~~~Iei~~l~----ymRGrt--l-~~~~vIvDEaqn~~----~~~~k~~ltR~g~~ 203 (262)
T PRK10536 135 FRPVYDVLVRRLGASFMQYCLRPEIGKVEIAPFA----YMRGRT--F-ENAVVILDEAQNVT----AAQMKMFLTRLGEN 203 (262)
T ss_pred HHHHHHHHHHHhChHHHHHHHHhccCcEEEecHH----HhcCCc--c-cCCEEEEechhcCC----HHHHHHHHhhcCCC
Confidence 11 111122211111 12334444332 222221 2 34799999999874 24566777888887
Q ss_pred CcEEEE
Q psy6275 195 VRFVFL 200 (391)
Q Consensus 195 ~~~i~~ 200 (391)
.++|+.
T Consensus 204 sk~v~~ 209 (262)
T PRK10536 204 VTVIVN 209 (262)
T ss_pred CEEEEe
Confidence 777764
|
|
| >PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A | Back alignment and domain information |
|---|
Probab=98.19 E-value=5e-06 Score=74.36 Aligned_cols=65 Identities=20% Similarity=0.316 Sum_probs=52.7
Q ss_pred CcHHHHHHHHHHhcCCc-EEEEecCCcchHHHHHHHHHHH--------HhcCCeEEEEcccHHHHHHHHHHHHH
Q psy6275 58 LDPFQKEAILCIENNQS-VLVSAHTSAGKTVVAEYAIASS--------LKQSQRVIYTTPIKALSNQKYREFEE 122 (391)
Q Consensus 58 ~~~~Q~~~i~~i~~~~~-~li~apTGsGKT~~~~~~~~~~--------l~~~~~vlvl~P~~~L~~q~~~~~~~ 122 (391)
+++.|.+|+..+.+... .+|.||+|+|||.+....+... ...+.++|+++|+...++++...+.+
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 67899999999988887 9999999999997765554444 45678999999999999999999988
|
|
| >COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.3e-05 Score=85.65 Aligned_cols=131 Identities=17% Similarity=0.131 Sum_probs=89.8
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHH--hcCCeEEEEcccHHHHHHHHHHHHHhccccee--eeCCcc-----c-CCCCCE
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSL--KQSQRVIYTTPIKALSNQKYREFEEQFKDVGL--ITGDVT-----I-NPSSSC 142 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l--~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~--~~g~~~-----~-~~~~~I 142 (391)
+..+|+=-||||||++....+-..+ ...+.|++++-+++|-.|+.+.++.+...... -..+.. + .....|
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~~~~s~~~Lk~~l~~~~~~i 353 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDPKAESTSELKELLEDGKGKI 353 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcccccCHHHHHHHHhcCCCcE
Confidence 4689999999999998655543333 45789999999999999999999988762222 111111 1 124589
Q ss_pred EEEcHHHHHHHHhcCc--cccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEcccCCCh
Q psy6275 143 LIMTTEILRNMLYRGS--EITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNA 207 (391)
Q Consensus 143 ~v~Tp~~l~~~l~~~~--~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~ 207 (391)
+|+|-+.+-....... ..-++==++|+||||+- .+|.....+...++ +...++||+||-..
T Consensus 354 i~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRS---Q~G~~~~~~~~~~~-~a~~~gFTGTPi~~ 416 (962)
T COG0610 354 IVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRS---QYGELAKLLKKALK-KAIFIGFTGTPIFK 416 (962)
T ss_pred EEEEecccchhhhcccccccCCCcEEEEEechhhc---cccHHHHHHHHHhc-cceEEEeeCCcccc
Confidence 9999999887765541 11122337999999984 34544444444454 48899999998644
|
|
| >TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA | Back alignment and domain information |
|---|
Probab=98.17 E-value=3.2e-05 Score=80.81 Aligned_cols=124 Identities=15% Similarity=0.111 Sum_probs=80.0
Q ss_pred CCCCCcHHHHHHHHHHhc-CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeC
Q psy6275 54 YPFVLDPFQKEAILCIEN-NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITG 132 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i~~-~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g 132 (391)
.++.+++-|.+|+..+.. ++-+++.|++|+|||+..-.....+-..+.++++++||-..+..+.+. .+
T Consensus 349 ~~~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~----~g------- 417 (744)
T TIGR02768 349 QHYRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAE----SG------- 417 (744)
T ss_pred ccCCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhc----cC-------
Confidence 456799999999998876 467899999999999875433322334588999999998776655321 11
Q ss_pred CcccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHH-hCCCCcEEEEc
Q psy6275 133 DVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLIL-LSDNVRFVFLS 201 (391)
Q Consensus 133 ~~~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~-~~~~~~~i~~S 201 (391)
+--.|-.++...+......+...++||+||+-++... .+..++.. ...+.++|++.
T Consensus 418 ---------~~a~Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~~~----~~~~Ll~~~~~~~~kliLVG 474 (744)
T TIGR02768 418 ---------IESRTLASLEYAWANGRDLLSDKDVLVIDEAGMVGSR----QMARVLKEAEEAGAKVVLVG 474 (744)
T ss_pred ---------CceeeHHHHHhhhccCcccCCCCcEEEEECcccCCHH----HHHHHHHHHHhcCCEEEEEC
Confidence 0111333332222233334568899999999987432 34445553 33567777765
|
This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer. |
| >KOG0384|consensus | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.2e-05 Score=84.08 Aligned_cols=153 Identities=18% Similarity=0.207 Sum_probs=103.6
Q ss_pred CCCCcHHHHHHHHHH----hcCCcEEEEecCCcchHHH---HHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc-c
Q psy6275 55 PFVLDPFQKEAILCI----ENNQSVLVSAHTSAGKTVV---AEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK-D 126 (391)
Q Consensus 55 ~~~~~~~Q~~~i~~i----~~~~~~li~apTGsGKT~~---~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~-~ 126 (391)
|.+++++|-+.+..+ ..++|+|+.-..|-|||.. |+..+.+...-.+..||++|...+.. +...|..+.. +
T Consensus 368 g~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst~~~-W~~ef~~w~~mn 446 (1373)
T KOG0384|consen 368 GNELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTITA-WEREFETWTDMN 446 (1373)
T ss_pred cchhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhhHH-HHHHHHHHhhhc
Confidence 456999999998754 5789999999999999874 45555555555678999999776654 4566766665 6
Q ss_pred ceeeeCCccc-----------CC-----CCCEEEEcHHHHHHHHhcCccccC--ccceEEEecccccCccccchhHHHHH
Q psy6275 127 VGLITGDVTI-----------NP-----SSSCLIMTTEILRNMLYRGSEITR--EVGWVIFDEIHYMRDKERGYVWEETL 188 (391)
Q Consensus 127 v~~~~g~~~~-----------~~-----~~~I~v~Tp~~l~~~l~~~~~~l~--~~~~lViDE~h~~~~~~~~~~~~~i~ 188 (391)
+.+++|+... .. +.+++++|++.++.- ...|+ ...++++||||++-.. ...+...+
T Consensus 447 ~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkD----k~~L~~i~w~~~~vDeahrLkN~--~~~l~~~l 520 (1373)
T KOG0384|consen 447 VIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKD----KAELSKIPWRYLLVDEAHRLKND--ESKLYESL 520 (1373)
T ss_pred eeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhcc----HhhhccCCcceeeecHHhhcCch--HHHHHHHH
Confidence 6667776541 11 468999999987632 11222 5679999999998643 23333345
Q ss_pred HHhCCCCcEEEEcccCCCh--HHHHHHhc
Q psy6275 189 ILLSDNVRFVFLSATIPNA--SQFAQWVS 215 (391)
Q Consensus 189 ~~~~~~~~~i~~SAT~~~~--~~~~~~l~ 215 (391)
..+..+ ..+++|+|+-.. +.+...+.
T Consensus 521 ~~f~~~-~rllitgTPlQNsikEL~sLl~ 548 (1373)
T KOG0384|consen 521 NQFKMN-HRLLITGTPLQNSLKELWSLLH 548 (1373)
T ss_pred HHhccc-ceeeecCCCccccHHHHHHHhc
Confidence 555543 356778887653 55665553
|
|
| >KOG4439|consensus | Back alignment and domain information |
|---|
Probab=98.15 E-value=8.3e-06 Score=80.74 Aligned_cols=157 Identities=20% Similarity=0.198 Sum_probs=101.3
Q ss_pred CCCCcHHHHHHHHHHhc-----CCcEEEEecCCcchHHHHHHHHHHHHh----------cCCeEEEEcccHHHHHHHHHH
Q psy6275 55 PFVLDPFQKEAILCIEN-----NQSVLVSAHTSAGKTVVAEYAIASSLK----------QSQRVIYTTPIKALSNQKYRE 119 (391)
Q Consensus 55 ~~~~~~~Q~~~i~~i~~-----~~~~li~apTGsGKT~~~~~~~~~~l~----------~~~~vlvl~P~~~L~~q~~~~ 119 (391)
.+.+-|+|+.++..+.- +.-.|+....|-|||+..+..+++.-. .....||++| ..|+.||..+
T Consensus 323 ~v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~P-aSli~qW~~E 401 (901)
T KOG4439|consen 323 KVELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICP-ASLIHQWEAE 401 (901)
T ss_pred eeecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCc-HHHHHHHHHH
Confidence 34688999999987632 345789999999999976655554321 1125999999 6789999999
Q ss_pred HHHhcc----cceeeeCCcccC------CCCCEEEEcHHHHHH----HHhc--CccccC--ccceEEEecccccCccccc
Q psy6275 120 FEEQFK----DVGLITGDVTIN------PSSSCLIMTTEILRN----MLYR--GSEITR--EVGWVIFDEIHYMRDKERG 181 (391)
Q Consensus 120 ~~~~~~----~v~~~~g~~~~~------~~~~I~v~Tp~~l~~----~l~~--~~~~l~--~~~~lViDE~h~~~~~~~~ 181 (391)
+.+... .|.++||...-. ...+|+|+|+..+.. -... ....+. ....||+||||.+-+. .
T Consensus 402 v~~rl~~n~LsV~~~HG~n~r~i~~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN~--~ 479 (901)
T KOG4439|consen 402 VARRLEQNALSVYLYHGPNKREISAKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRNS--N 479 (901)
T ss_pred HHHHHhhcceEEEEecCCccccCCHHHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhccc--c
Confidence 988877 667788876321 257999999976654 1111 111122 4568999999988654 2
Q ss_pred hhHHHHHHHhCCCCcEEEEcccCCCh--HHHHHHhc
Q psy6275 182 YVWEETLILLSDNVRFVFLSATIPNA--SQFAQWVS 215 (391)
Q Consensus 182 ~~~~~i~~~~~~~~~~i~~SAT~~~~--~~~~~~l~ 215 (391)
..-......+....+. ++|+|+-.. .++...+.
T Consensus 480 tq~S~AVC~L~a~~RW-clTGTPiqNn~~DvysLlr 514 (901)
T KOG4439|consen 480 TQCSKAVCKLSAKSRW-CLTGTPIQNNLWDVYSLLR 514 (901)
T ss_pred hhHHHHHHHHhhccee-ecccCccccchhHHHHHHH
Confidence 2222223334333444 667886543 55555443
|
|
| >KOG1802|consensus | Back alignment and domain information |
|---|
Probab=98.15 E-value=9.7e-06 Score=79.80 Aligned_cols=80 Identities=14% Similarity=0.107 Sum_probs=66.1
Q ss_pred ccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh-cCCeEEEEcccHHHHHHHHHHHHHh
Q psy6275 46 SKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK-QSQRVIYTTPIKALSNQKYREFEEQ 123 (391)
Q Consensus 46 ~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~-~~~~vlvl~P~~~L~~q~~~~~~~~ 123 (391)
.+...+...++. ++.-|..|+.+++.+.-.++.||+|+|||.+....+.+... ..++|||.+|+...++|+++.+.+.
T Consensus 398 ~LP~~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh~t 477 (935)
T KOG1802|consen 398 LLPRRFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIHKT 477 (935)
T ss_pred cCchhhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHHHHHHhc
Confidence 344455556675 99999999999999999999999999999987666666554 4689999999999999999998876
Q ss_pred cc
Q psy6275 124 FK 125 (391)
Q Consensus 124 ~~ 125 (391)
.-
T Consensus 478 gL 479 (935)
T KOG1802|consen 478 GL 479 (935)
T ss_pred Cc
Confidence 53
|
|
| >PRK13889 conjugal transfer relaxase TraA; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=5.3e-05 Score=80.52 Aligned_cols=127 Identities=13% Similarity=0.072 Sum_probs=83.1
Q ss_pred ccCCCCCcHHHHHHHHHHhcCC-cEEEEecCCcchHHHHHHHHHHHH-hcCCeEEEEcccHHHHHHHHHHHHHhccccee
Q psy6275 52 REYPFVLDPFQKEAILCIENNQ-SVLVSAHTSAGKTVVAEYAIASSL-KQSQRVIYTTPIKALSNQKYREFEEQFKDVGL 129 (391)
Q Consensus 52 ~~~~~~~~~~Q~~~i~~i~~~~-~~li~apTGsGKT~~~~~~~~~~l-~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~ 129 (391)
...|+.+++-|.+|+..+..++ .+++.|+.|+|||++. -.+.... ..+.+|+.++||-..+..+.. ..
T Consensus 341 ~~~g~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l-~~~~~~~e~~G~~V~~~ApTGkAA~~L~e----~t----- 410 (988)
T PRK13889 341 EARGLVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAML-GVAREAWEAAGYEVRGAALSGIAAENLEG----GS----- 410 (988)
T ss_pred HhcCCCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHH-HHHHHHHHHcCCeEEEecCcHHHHHHHhh----cc-----
Confidence 3457889999999999888754 5789999999999873 3444433 357899999999877655532 11
Q ss_pred eeCCcccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHh-CCCCcEEEEccc
Q psy6275 130 ITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILL-SDNVRFVFLSAT 203 (391)
Q Consensus 130 ~~g~~~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~-~~~~~~i~~SAT 203 (391)
.+--.|-..++.........+...++|||||+-++.. ..+..++... +.+.++|++.=+
T Consensus 411 -----------Gi~a~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~~----~~m~~LL~~a~~~garvVLVGD~ 470 (988)
T PRK13889 411 -----------GIASRTIASLEHGWGQGRDLLTSRDVLVIDEAGMVGT----RQLERVLSHAADAGAKVVLVGDP 470 (988)
T ss_pred -----------CcchhhHHHHHhhhcccccccccCcEEEEECcccCCH----HHHHHHHHhhhhCCCEEEEECCH
Confidence 0111133333322222334466789999999997743 2455566543 456788877544
|
|
| >PRK08181 transposase; Validated | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00014 Score=66.52 Aligned_cols=126 Identities=16% Similarity=0.182 Sum_probs=72.5
Q ss_pred CCCccCCCC----CcHHHHHHHH----HHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHH
Q psy6275 49 KPAREYPFV----LDPFQKEAIL----CIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREF 120 (391)
Q Consensus 49 ~~~~~~~~~----~~~~Q~~~i~----~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~ 120 (391)
..+..+.|. +...|..++. .+..+++++++||+|+|||..+..........+.+++++ +..+|..++....
T Consensus 75 ~tle~fd~~~~~~~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~-~~~~L~~~l~~a~ 153 (269)
T PRK08181 75 KTLDSFDFEAVPMVSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFT-RTTDLVQKLQVAR 153 (269)
T ss_pred CCHhhCCccCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeee-eHHHHHHHHHHHH
Confidence 345555542 4567776663 345788999999999999987666555555667677666 4566666653221
Q ss_pred HHhcccceeeeCCcccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCcccc-chhHHHHHHHhCCCCcEEE
Q psy6275 121 EEQFKDVGLITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKER-GYVWEETLILLSDNVRFVF 199 (391)
Q Consensus 121 ~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~-~~~~~~i~~~~~~~~~~i~ 199 (391)
.. .+.+.++.. +...+++|+||++....... ...+-.++...-.+..+|+
T Consensus 154 ~~----------------------~~~~~~l~~-------l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~Ii 204 (269)
T PRK08181 154 RE----------------------LQLESAIAK-------LDKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILI 204 (269)
T ss_pred hC----------------------CcHHHHHHH-------HhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 10 122233222 34789999999997643211 1123334443323344555
Q ss_pred EcccC
Q psy6275 200 LSATI 204 (391)
Q Consensus 200 ~SAT~ 204 (391)
.|-..
T Consensus 205 TSN~~ 209 (269)
T PRK08181 205 TANQP 209 (269)
T ss_pred EcCCC
Confidence 44443
|
|
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=3.3e-05 Score=70.11 Aligned_cols=106 Identities=11% Similarity=0.089 Sum_probs=60.9
Q ss_pred HhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHH
Q psy6275 69 IENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTE 148 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~ 148 (391)
+..+++++++||+|+|||..+..........+.++++. ...+++.++..... -.+..
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~-t~~~l~~~l~~~~~----------------------~~~~~ 151 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFA-TAAQWVARLAAAHH----------------------AGRLQ 151 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhh-hHHHHHHHHHHHHh----------------------cCcHH
Confidence 45678999999999999998766666666667777664 33445554421110 01222
Q ss_pred HHHHHHhcCccccCccceEEEecccccCcccc-chhHHHHHHHhCCCCcEEEEcccC
Q psy6275 149 ILRNMLYRGSEITREVGWVIFDEIHYMRDKER-GYVWEETLILLSDNVRFVFLSATI 204 (391)
Q Consensus 149 ~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~-~~~~~~i~~~~~~~~~~i~~SAT~ 204 (391)
..+. .+...+++|+||+|....... ...+..++........+|+.|...
T Consensus 152 ~~l~-------~l~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~ 201 (254)
T PRK06526 152 AELV-------KLGRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKP 201 (254)
T ss_pred HHHH-------HhccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCC
Confidence 2211 134689999999997642211 122333443322234566666665
|
|
| >KOG0392|consensus | Back alignment and domain information |
|---|
Probab=97.99 E-value=5.4e-05 Score=79.33 Aligned_cols=153 Identities=16% Similarity=0.184 Sum_probs=100.6
Q ss_pred CCcHHHHHHHHHH--hc--CCcEEEEecCCcchHHHHHHH-HHHHHhc--------CCeEEEEcccHHHHHHHHHHHHHh
Q psy6275 57 VLDPFQKEAILCI--EN--NQSVLVSAHTSAGKTVVAEYA-IASSLKQ--------SQRVIYTTPIKALSNQKYREFEEQ 123 (391)
Q Consensus 57 ~~~~~Q~~~i~~i--~~--~~~~li~apTGsGKT~~~~~~-~~~~l~~--------~~~vlvl~P~~~L~~q~~~~~~~~ 123 (391)
+++.||++.+..+ ++ +=+.|++-..|-|||+..+.. +..+..+ ....||++| ..|+..|..++.++
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCP-sTLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCP-STLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECC-chhhhHHHHHHHHh
Confidence 4788999999865 22 347899999999999976433 3333322 234899999 67999999999999
Q ss_pred cc--cceeeeCCcccC-------CCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCC
Q psy6275 124 FK--DVGLITGDVTIN-------PSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDN 194 (391)
Q Consensus 124 ~~--~v~~~~g~~~~~-------~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~ 194 (391)
+. ++....|....+ .+++|+|++++.+.+-...-. -.++.++|+||-|-+-.. ...+....+.+..+
T Consensus 1054 ~pfL~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~l~--~~~wNYcVLDEGHVikN~--ktkl~kavkqL~a~ 1129 (1549)
T KOG0392|consen 1054 FPFLKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDYLI--KIDWNYCVLDEGHVIKNS--KTKLTKAVKQLRAN 1129 (1549)
T ss_pred cchhhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHHHH--hcccceEEecCcceecch--HHHHHHHHHHHhhc
Confidence 98 444455544322 246899999998764322111 126789999999988543 33344455555543
Q ss_pred CcEEEEcccCCCh--HHHHHHhc
Q psy6275 195 VRFVFLSATIPNA--SQFAQWVS 215 (391)
Q Consensus 195 ~~~i~~SAT~~~~--~~~~~~l~ 215 (391)
. .+.+|+|+-.. .++...+.
T Consensus 1130 h-RLILSGTPIQNnvleLWSLFd 1151 (1549)
T KOG0392|consen 1130 H-RLILSGTPIQNNVLELWSLFD 1151 (1549)
T ss_pred c-eEEeeCCCcccCHHHHHHHHH
Confidence 3 45678887543 44444333
|
|
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
Probab=97.96 E-value=2.8e-05 Score=62.99 Aligned_cols=117 Identities=20% Similarity=0.163 Sum_probs=56.2
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhc-----CCeEEEE-cccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEE
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQ-----SQRVIYT-TPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLI 144 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~-----~~~vlvl-~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v 144 (391)
+++.+++.||+|+|||......+...... ...++++ +|...-...+...+...++... .. -
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~---~~----------~ 69 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPL---KS----------R 69 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SS---SS----------T
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccc---cc----------c
Confidence 45678999999999999865554443321 3444444 4443323444444444332110 00 1
Q ss_pred EcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEcccC
Q psy6275 145 MTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATI 204 (391)
Q Consensus 145 ~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 204 (391)
.+...+.+.+....... ...++|+||+|.+. ....++.+........--+++++++
T Consensus 70 ~~~~~l~~~~~~~l~~~-~~~~lviDe~~~l~---~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 70 QTSDELRSLLIDALDRR-RVVLLVIDEADHLF---SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp S-HHHHHHHHHHHHHHC-TEEEEEEETTHHHH---THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred CCHHHHHHHHHHHHHhc-CCeEEEEeChHhcC---CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 23444444333221111 22799999999973 1445555555444333344455554
|
|
| >TIGR00604 rad3 DNA repair helicase (rad3) | Back alignment and domain information |
|---|
Probab=97.95 E-value=2.6e-05 Score=81.44 Aligned_cols=71 Identities=15% Similarity=0.313 Sum_probs=61.4
Q ss_pred cCCCC-CcHHHHHHHHH----HhcCCcEEEEecCCcchHHHHHHHHHHHHh-cC--CeEEEEcccHHHHHHHHHHHHHh
Q psy6275 53 EYPFV-LDPFQKEAILC----IENNQSVLVSAHTSAGKTVVAEYAIASSLK-QS--QRVIYTTPIKALSNQKYREFEEQ 123 (391)
Q Consensus 53 ~~~~~-~~~~Q~~~i~~----i~~~~~~li~apTGsGKT~~~~~~~~~~l~-~~--~~vlvl~P~~~L~~q~~~~~~~~ 123 (391)
.++|+ ++|.|.+.+.. +.++++.++.+|||+|||++.+.+++.+.. .+ .+++|.+.|..-..|+.+++++.
T Consensus 5 ~FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~~ 83 (705)
T TIGR00604 5 YFPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRKL 83 (705)
T ss_pred ecCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHhh
Confidence 35777 59999998875 467899999999999999999999998875 33 69999999999999999999884
|
All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00011 Score=64.66 Aligned_cols=123 Identities=20% Similarity=0.232 Sum_probs=80.1
Q ss_pred cCCCCCcHHHHHHHHHHhc---CCcEEEEecCCcchHHHHHHHHHH-HHhcCCe-EEEEcccHHHHHHHHHHHHHhcc--
Q psy6275 53 EYPFVLDPFQKEAILCIEN---NQSVLVSAHTSAGKTVVAEYAIAS-SLKQSQR-VIYTTPIKALSNQKYREFEEQFK-- 125 (391)
Q Consensus 53 ~~~~~~~~~Q~~~i~~i~~---~~~~li~apTGsGKT~~~~~~~~~-~l~~~~~-vlvl~P~~~L~~q~~~~~~~~~~-- 125 (391)
+.++-+++.|.+....+.+ ++|.+...-+|.|||.+ +.|++. .+.++.+ +.+++| ++|..|....+...++
T Consensus 19 e~~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg~~LvrviVp-k~Ll~q~~~~L~~~lg~l 96 (229)
T PF12340_consen 19 ESNILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADGSRLVRVIVP-KALLEQMRQMLRSRLGGL 96 (229)
T ss_pred HcCceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCCCcEEEEEcC-HHHHHHHHHHHHHHHHHH
Confidence 3455699999999988754 57999999999999988 445444 4445544 445555 7899999999888776
Q ss_pred ---cceeeeC--Cccc---------------CCCCCEEEEcHHHHHHHHhcC------------------ccccCccceE
Q psy6275 126 ---DVGLITG--DVTI---------------NPSSSCLIMTTEILRNMLYRG------------------SEITREVGWV 167 (391)
Q Consensus 126 ---~v~~~~g--~~~~---------------~~~~~I~v~Tp~~l~~~l~~~------------------~~~l~~~~~l 167 (391)
.+-.+.- +... .....|+++||+.++++.-.. ...+.....=
T Consensus 97 ~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q~~l~~~~rd 176 (229)
T PF12340_consen 97 LNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPEEARELLKIQKWLDEHSRD 176 (229)
T ss_pred hCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCe
Confidence 1111111 1111 124569999999877653211 1123344457
Q ss_pred EEecccccCc
Q psy6275 168 IFDEIHYMRD 177 (391)
Q Consensus 168 ViDE~h~~~~ 177 (391)
|+||+|..+.
T Consensus 177 ilDEsDe~L~ 186 (229)
T PF12340_consen 177 ILDESDEILS 186 (229)
T ss_pred EeECchhccC
Confidence 8899887654
|
There are two conserved sequence motifs: LLE and NMG. |
| >PRK06921 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=4.6e-05 Score=69.69 Aligned_cols=45 Identities=18% Similarity=0.243 Sum_probs=31.0
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhc-CCeEEEEcccHHHHHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQ-SQRVIYTTPIKALSNQK 116 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~-~~~vlvl~P~~~L~~q~ 116 (391)
.+.++++.|++|+|||..+...+...+.. +..++++ +..++..++
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~-~~~~l~~~l 161 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYF-PFVEGFGDL 161 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEE-EHHHHHHHH
Confidence 36789999999999998765544444555 6667666 445555554
|
|
| >PRK04296 thymidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=2.4e-05 Score=67.93 Aligned_cols=86 Identities=9% Similarity=0.173 Sum_probs=52.6
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEccc---HHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPI---KALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTE 148 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~---~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~ 148 (391)
|.-.++.||+|+|||+.++-.+.+....+.+++++-|. +....++ ....+ ... ..+.+..+.
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i-------~~~lg-----~~~---~~~~~~~~~ 66 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKV-------VSRIG-----LSR---EAIPVSSDT 66 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcE-------ecCCC-----Ccc---cceEeCChH
Confidence 34568999999999988877777776778889888662 2211111 11111 010 112334555
Q ss_pred HHHHHHhcCccccCccceEEEeccccc
Q psy6275 149 ILRNMLYRGSEITREVGWVIFDEIHYM 175 (391)
Q Consensus 149 ~l~~~l~~~~~~l~~~~~lViDE~h~~ 175 (391)
.++..+.. .-.++++||+||+|.+
T Consensus 67 ~~~~~~~~---~~~~~dvviIDEaq~l 90 (190)
T PRK04296 67 DIFELIEE---EGEKIDCVLIDEAQFL 90 (190)
T ss_pred HHHHHHHh---hCCCCCEEEEEccccC
Confidence 55555544 2347899999999876
|
|
| >PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0011 Score=64.28 Aligned_cols=107 Identities=14% Similarity=0.140 Sum_probs=72.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhccc-------------cee------------------------eeCCcc-------
Q psy6275 100 SQRVIYTTPIKALSNQKYREFEEQFKD-------------VGL------------------------ITGDVT------- 135 (391)
Q Consensus 100 ~~~vlvl~P~~~L~~q~~~~~~~~~~~-------------v~~------------------------~~g~~~------- 135 (391)
.++||||+|+|..|-++.+.+.++... .+. ..|+..
T Consensus 37 RPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlGi 116 (442)
T PF06862_consen 37 RPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLGI 116 (442)
T ss_pred CceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEeE
Confidence 479999999999999999888877652 110 111111
Q ss_pred -c----------CCCCCEEEEcHHHHHHHHhc------CccccCccceEEEecccccCccccchhHHHHHHHh---C---
Q psy6275 136 -I----------NPSSSCLIMTTEILRNMLYR------GSEITREVGWVIFDEIHYMRDKERGYVWEETLILL---S--- 192 (391)
Q Consensus 136 -~----------~~~~~I~v~Tp~~l~~~l~~------~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~---~--- 192 (391)
. -.++||+||+|=-|...+.. ...+|+++.++|+|.||.++-+.+... ..++..+ |
T Consensus 117 k~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv-~~v~~~lN~~P~~~ 195 (442)
T PF06862_consen 117 KFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHV-LHVFEHLNLQPKKS 195 (442)
T ss_pred EEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHH-HHHHHHhccCCCCC
Confidence 0 01368999999777666653 346889999999999998876544433 3344433 1
Q ss_pred ------------------CCCcEEEEcccCCCh
Q psy6275 193 ------------------DNVRFVFLSATIPNA 207 (391)
Q Consensus 193 ------------------~~~~~i~~SAT~~~~ 207 (391)
.-+|+|++|+.....
T Consensus 196 ~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe 228 (442)
T PF06862_consen 196 HDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPE 228 (442)
T ss_pred CCCCHHHHHHHHHcCcchheeEeEEecCCCCHH
Confidence 238999999998655
|
; GO: 0005634 nucleus |
| >KOG0921|consensus | Back alignment and domain information |
|---|
Probab=97.85 E-value=7.5e-05 Score=76.01 Aligned_cols=147 Identities=23% Similarity=0.317 Sum_probs=96.6
Q ss_pred HHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcC-----CeEEEEcccHHHHHHHHHHHHHhcc-cceeeeC-----
Q psy6275 64 EAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQS-----QRVIYTTPIKALSNQKYREFEEQFK-DVGLITG----- 132 (391)
Q Consensus 64 ~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~-----~~vlvl~P~~~L~~q~~~~~~~~~~-~v~~~~g----- 132 (391)
..+.++..++.+++.+.||+|||..+...+++.+..+ .-+.+..|++-.+..+.+++..--. .++-..|
T Consensus 385 ~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~vRf 464 (1282)
T KOG0921|consen 385 EILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNVRF 464 (1282)
T ss_pred HHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhcccccccccc
Confidence 3344556778899999999999999988888877543 3466777888666666655544322 1211111
Q ss_pred -CcccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHh---CCCCcEEEEcccCCChH
Q psy6275 133 -DVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILL---SDNVRFVFLSATIPNAS 208 (391)
Q Consensus 133 -~~~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~---~~~~~~i~~SAT~~~~~ 208 (391)
......-..|+.+|-+-+++.+... +..+.++|+||.|+..-. +..+..+++.+ .....+++||||+ +..
T Consensus 465 ~Sa~prpyg~i~fctvgvllr~~e~g---lrg~sh~i~deiherdv~--~dfll~~lr~m~~ty~dl~v~lmsatI-dTd 538 (1282)
T KOG0921|consen 465 DSATPRPYGSIMFCTVGVLLRMMENG---LRGISHVIIDEIHERDVD--TDFVLIVLREMISTYRDLRVVLMSATI-DTD 538 (1282)
T ss_pred cccccccccceeeeccchhhhhhhhc---ccccccccchhhhhhccc--hHHHHHHHHhhhccchhhhhhhhhccc-chh
Confidence 1111234568999999998887765 447889999999975322 33344444433 3568889999999 555
Q ss_pred HHHHHhcc
Q psy6275 209 QFAQWVSH 216 (391)
Q Consensus 209 ~~~~~l~~ 216 (391)
.|..+++.
T Consensus 539 ~f~~~f~~ 546 (1282)
T KOG0921|consen 539 LFTNFFSS 546 (1282)
T ss_pred hhhhhhcc
Confidence 56666653
|
|
| >PRK13826 Dtr system oriT relaxase; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00031 Score=75.29 Aligned_cols=126 Identities=15% Similarity=0.053 Sum_probs=83.0
Q ss_pred CCCCCcHHHHHHHHHHh-cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeC
Q psy6275 54 YPFVLDPFQKEAILCIE-NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITG 132 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i~-~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g 132 (391)
.++.+++-|.+++..+. .++-.++.|+.|+|||++.-...-.+-..+.+|+.++||-.-+..+.+. .+
T Consensus 378 ~~~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApTgkAA~~L~e~----~G------- 446 (1102)
T PRK13826 378 RHARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAAEGLEKE----AG------- 446 (1102)
T ss_pred cCCCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcHHHHHHHHHh----hC-------
Confidence 36789999999999875 4567899999999999875443333334688999999998777665322 11
Q ss_pred CcccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhC-CCCcEEEEccc
Q psy6275 133 DVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLS-DNVRFVFLSAT 203 (391)
Q Consensus 133 ~~~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~-~~~~~i~~SAT 203 (391)
|--.|-..++.........+..-++|||||+.++. ...+..++.... .+.++|++.=+
T Consensus 447 ---------i~a~TIas~ll~~~~~~~~l~~~~vlVIDEAsMv~----~~~m~~Ll~~~~~~garvVLVGD~ 505 (1102)
T PRK13826 447 ---------IQSRTLSSWELRWNQGRDQLDNKTVFVLDEAGMVA----SRQMALFVEAVTRAGAKLVLVGDP 505 (1102)
T ss_pred ---------CCeeeHHHHHhhhccCccCCCCCcEEEEECcccCC----HHHHHHHHHHHHhcCCEEEEECCH
Confidence 11123333321112233446677899999999764 335556666654 56788877544
|
|
| >TIGR00376 DNA helicase, putative | Back alignment and domain information |
|---|
Probab=97.80 E-value=7.6e-05 Score=76.59 Aligned_cols=67 Identities=22% Similarity=0.212 Sum_probs=59.2
Q ss_pred CCcHHHHHHHHHHhcC-CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHh
Q psy6275 57 VLDPFQKEAILCIENN-QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQ 123 (391)
Q Consensus 57 ~~~~~Q~~~i~~i~~~-~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~ 123 (391)
.+++.|.+|+..+... ...++.||+|+|||.+....+.+.+..+.+||+++||...++++.+.+...
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a~sn~Avd~l~e~l~~~ 224 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTAPSNIAVDNLLERLALC 224 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCcHHHHHHHHHHHHhC
Confidence 4899999999987765 678999999999999887777777788889999999999999999998874
|
The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases. |
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00024 Score=58.02 Aligned_cols=38 Identities=16% Similarity=0.272 Sum_probs=26.4
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEccc
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPI 109 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~ 109 (391)
++.+++.||+|+|||......+......+..++++...
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~ 56 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNAS 56 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehh
Confidence 67899999999999986555544443445566666543
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >KOG1132|consensus | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00016 Score=73.83 Aligned_cols=72 Identities=19% Similarity=0.270 Sum_probs=55.1
Q ss_pred cCCCCCcHHHHHHHHHH----hcCCcEEEEecCCcchHHHHHHHHHHHHh--------------c---------------
Q psy6275 53 EYPFVLDPFQKEAILCI----ENNQSVLVSAHTSAGKTVVAEYAIASSLK--------------Q--------------- 99 (391)
Q Consensus 53 ~~~~~~~~~Q~~~i~~i----~~~~~~li~apTGsGKT~~~~~~~~~~l~--------------~--------------- 99 (391)
+++|+|++.|...+..+ ....+.++.+|||+|||++.+-..+.+.. .
T Consensus 17 ~fP~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~ 96 (945)
T KOG1132|consen 17 EFPFQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEK 96 (945)
T ss_pred eccCCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCc
Confidence 46788999999877654 56788999999999999987665555542 0
Q ss_pred -------------CCeEEEEcccHHHHHHHHHHHHHhc
Q psy6275 100 -------------SQRVIYTTPIKALSNQKYREFEEQF 124 (391)
Q Consensus 100 -------------~~~vlvl~P~~~L~~q~~~~~~~~~ 124 (391)
-+++.|-.-|..-..|+.+++++..
T Consensus 97 s~e~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~ 134 (945)
T KOG1132|consen 97 SEEAGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTG 134 (945)
T ss_pred hhhhcCccccccCCceEEEecchHHHHHHHHHHHhhcC
Confidence 1367777778888899998888764
|
|
| >COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00023 Score=64.60 Aligned_cols=99 Identities=23% Similarity=0.242 Sum_probs=67.6
Q ss_pred CCCccCCCC-CcHHHHHHHHHH-------hcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHH
Q psy6275 49 KPAREYPFV-LDPFQKEAILCI-------ENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREF 120 (391)
Q Consensus 49 ~~~~~~~~~-~~~~Q~~~i~~i-------~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~ 120 (391)
+.+..+.|. ....+.+++..+ .+++++++.||+|+|||..+.......+..+.+| .++++.+|+.++...+
T Consensus 74 k~~~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv-~f~~~~el~~~Lk~~~ 152 (254)
T COG1484 74 KTFEEFDFEFQPGIDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELLKAGISV-LFITAPDLLSKLKAAF 152 (254)
T ss_pred CCcccccccCCcchhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeE-EEEEHHHHHHHHHHHH
Confidence 566667776 666677766543 3578999999999999998766666666444555 5558889988887655
Q ss_pred HHhcccceeeeCCcccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccC
Q psy6275 121 EEQFKDVGLITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMR 176 (391)
Q Consensus 121 ~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~ 176 (391)
..-. ..+.+... +.+++++|+||+-...
T Consensus 153 ~~~~---------------------~~~~l~~~-------l~~~dlLIiDDlG~~~ 180 (254)
T COG1484 153 DEGR---------------------LEEKLLRE-------LKKVDLLIIDDIGYEP 180 (254)
T ss_pred hcCc---------------------hHHHHHHH-------hhcCCEEEEecccCcc
Confidence 4300 12333332 4489999999998753
|
|
| >KOG0391|consensus | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0001 Score=76.94 Aligned_cols=145 Identities=16% Similarity=0.163 Sum_probs=96.3
Q ss_pred CCcHHHHHHHHHH----hcCCcEEEEecCCcchHHHHHHHHHHHHhc---CCeEEEEcccHHHHHHHHHHHHHhcc--cc
Q psy6275 57 VLDPFQKEAILCI----ENNQSVLVSAHTSAGKTVVAEYAIASSLKQ---SQRVIYTTPIKALSNQKYREFEEQFK--DV 127 (391)
Q Consensus 57 ~~~~~Q~~~i~~i----~~~~~~li~apTGsGKT~~~~~~~~~~l~~---~~~vlvl~P~~~L~~q~~~~~~~~~~--~v 127 (391)
.++.||+..+..+ .++-|.|+.-..|-|||..-+..+.+.... =+-=||+|||-.+.+ |.-+|++++. ++
T Consensus 615 qLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviLn-WEMElKRwcPglKI 693 (1958)
T KOG0391|consen 615 QLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVILN-WEMELKRWCPGLKI 693 (1958)
T ss_pred HHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhhh-hhHHHhhhCCcceE
Confidence 3788999999865 346689999999999998643322222111 245678889877654 5668888888 44
Q ss_pred eeeeCCcccC----------CCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcE
Q psy6275 128 GLITGDVTIN----------PSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRF 197 (391)
Q Consensus 128 ~~~~g~~~~~----------~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~ 197 (391)
-.+.|..... ...+|.|+++..++.-+..-. -+.+.++|+||||.+-.+ ..-.|+.++.... .+.
T Consensus 694 LTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~AFk--rkrWqyLvLDEaqnIKnf-ksqrWQAllnfns--qrR 768 (1958)
T KOG0391|consen 694 LTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTAFK--RKRWQYLVLDEAQNIKNF-KSQRWQALLNFNS--QRR 768 (1958)
T ss_pred eeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHHHH--hhccceeehhhhhhhcch-hHHHHHHHhccch--hhe
Confidence 4455644321 124788999987775443211 237889999999998654 3445776665443 567
Q ss_pred EEEcccCCCh
Q psy6275 198 VFLSATIPNA 207 (391)
Q Consensus 198 i~~SAT~~~~ 207 (391)
++++.|+-..
T Consensus 769 LLLtgTPLqN 778 (1958)
T KOG0391|consen 769 LLLTGTPLQN 778 (1958)
T ss_pred eeecCCchhh
Confidence 8889997554
|
|
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0013 Score=59.30 Aligned_cols=126 Identities=16% Similarity=0.144 Sum_probs=68.8
Q ss_pred cHHHHHHHHHHh-------c-CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceee
Q psy6275 59 DPFQKEAILCIE-------N-NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLI 130 (391)
Q Consensus 59 ~~~Q~~~i~~i~-------~-~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~ 130 (391)
++-|..++..+. . ...+++.|++|+|||..+...+......+..++++ +..++...+...+..
T Consensus 78 ~~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~i-t~~~l~~~l~~~~~~-------- 148 (244)
T PRK07952 78 CEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLII-TVADIMSAMKDTFSN-------- 148 (244)
T ss_pred CchHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE-EHHHHHHHHHHHHhh--------
Confidence 455666665432 1 14799999999999988665555555566677666 445554444332210
Q ss_pred eCCcccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccch-hHHHHHHHh-CCCCcEEEEcccCCChH
Q psy6275 131 TGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGY-VWEETLILL-SDNVRFVFLSATIPNAS 208 (391)
Q Consensus 131 ~g~~~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~-~~~~i~~~~-~~~~~~i~~SAT~~~~~ 208 (391)
. + .+.+.+++. +..+++|||||++......+.. .+..++... .....+++.| .+ +..
T Consensus 149 -~--------~---~~~~~~l~~-------l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitS-Nl-~~~ 207 (244)
T PRK07952 149 -S--------E---TSEEQLLND-------LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLT-NS-NME 207 (244)
T ss_pred -c--------c---ccHHHHHHH-------hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeC-CC-CHH
Confidence 0 0 123333332 4478999999999865332222 233344432 3345555544 44 233
Q ss_pred HHHHHh
Q psy6275 209 QFAQWV 214 (391)
Q Consensus 209 ~~~~~l 214 (391)
++.+.+
T Consensus 208 ~l~~~~ 213 (244)
T PRK07952 208 EMTKLL 213 (244)
T ss_pred HHHHHh
Confidence 344443
|
|
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00084 Score=60.60 Aligned_cols=75 Identities=17% Similarity=0.246 Sum_probs=47.3
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILR 151 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l~ 151 (391)
..++++.||+|+|||..+...+......+..++++ +..+|..++...+.. +. +...++
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i-~~~~l~~~l~~~~~~---------~~------------~~~~~l 158 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVV-TVPDVMSRLHESYDN---------GQ------------SGEKFL 158 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEE-EHHHHHHHHHHHHhc---------cc------------hHHHHH
Confidence 36799999999999987655555555555555444 556777766443321 00 111222
Q ss_pred HHHhcCccccCccceEEEeccccc
Q psy6275 152 NMLYRGSEITREVGWVIFDEIHYM 175 (391)
Q Consensus 152 ~~l~~~~~~l~~~~~lViDE~h~~ 175 (391)
+ .+.++++||+||++..
T Consensus 159 ~-------~l~~~dLLiIDDlg~~ 175 (248)
T PRK12377 159 Q-------ELCKVDLLVLDEIGIQ 175 (248)
T ss_pred H-------HhcCCCEEEEcCCCCC
Confidence 2 2458999999999754
|
|
| >PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00011 Score=68.85 Aligned_cols=114 Identities=20% Similarity=0.179 Sum_probs=73.7
Q ss_pred CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc----CCeEEEEcccHHHHHHHHHHHHHhcccceeeeC-
Q psy6275 58 LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ----SQRVIYTTPIKALSNQKYREFEEQFKDVGLITG- 132 (391)
Q Consensus 58 ~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~----~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g- 132 (391)
+++-|.+++.. ..++++|.|+.|||||.+.+.-+...+.. +.++|++++|+..+.++..++...+........
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~~~~~ 78 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLEEEQQESSD 78 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHHCCHCCTT
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcCcccccccc
Confidence 47889999987 67789999999999999887666666544 368999999999999999999887642211000
Q ss_pred Cc----ccCCCCCEEEEcHHHHHHHHhcC-cccc-CccceEEEeccc
Q psy6275 133 DV----TINPSSSCLIMTTEILRNMLYRG-SEIT-REVGWVIFDEIH 173 (391)
Q Consensus 133 ~~----~~~~~~~I~v~Tp~~l~~~l~~~-~~~l-~~~~~lViDE~h 173 (391)
+. .......+.|+|-..+...+-+. .... -.-.+-++|+..
T Consensus 79 ~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 79 NERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp -HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred cccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 00 00113468888987766543322 1111 133566777776
|
THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A .... |
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00013 Score=59.15 Aligned_cols=42 Identities=21% Similarity=0.231 Sum_probs=28.7
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALS 113 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~ 113 (391)
++.+++.||+|+|||......+.........++++.+.....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~ 43 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILE 43 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccc
Confidence 567999999999999986555444322233577777765443
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00012 Score=62.86 Aligned_cols=46 Identities=17% Similarity=0.322 Sum_probs=32.8
Q ss_pred hcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHH
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQK 116 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~ 116 (391)
.+++++++.||+|+|||..+...+.+.+..+..++++ +..+|..++
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~-~~~~L~~~l 90 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFI-TASDLLDEL 90 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE-EHHHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEe-ecCceeccc
Confidence 5678999999999999998776666677777777665 566776665
|
They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A. |
| >KOG0386|consensus | Back alignment and domain information |
|---|
Probab=97.64 E-value=7.3e-05 Score=76.98 Aligned_cols=145 Identities=19% Similarity=0.192 Sum_probs=93.6
Q ss_pred CCCCcHHHHHHHHHH----hcCCcEEEEecCCcchHHHHHHHHH---HHHhcCCeEEEEcccHHHHHHHHHHHHHhcccc
Q psy6275 55 PFVLDPFQKEAILCI----ENNQSVLVSAHTSAGKTVVAEYAIA---SSLKQSQRVIYTTPIKALSNQKYREFEEQFKDV 127 (391)
Q Consensus 55 ~~~~~~~Q~~~i~~i----~~~~~~li~apTGsGKT~~~~~~~~---~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v 127 (391)
|-++.+||...+..+ .++-|.++.-.+|-|||..-+..+. ......+.-||+||+-.|.+- ..+|..+...+
T Consensus 392 GG~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~NW-~~Ef~kWaPSv 470 (1157)
T KOG0386|consen 392 GGELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVNW-SSEFPKWAPSV 470 (1157)
T ss_pred CCCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccCCc-hhhccccccce
Confidence 347999999999876 3445789999999999986533332 233446778999999999775 46777777655
Q ss_pred ee--eeCCccc---------CCCCCEEEEcHHHHHHHHhcCccccC--ccceEEEecccccCccccchhHHHHHHHhCCC
Q psy6275 128 GL--ITGDVTI---------NPSSSCLIMTTEILRNMLYRGSEITR--EVGWVIFDEIHYMRDKERGYVWEETLILLSDN 194 (391)
Q Consensus 128 ~~--~~g~~~~---------~~~~~I~v~Tp~~l~~~l~~~~~~l~--~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~ 194 (391)
.. ..|.... ..+.+|+++|++.+.. .+..|+ +..++||||-|+|... ...+...+.-.-..
T Consensus 471 ~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik----dk~lLsKI~W~yMIIDEGHRmKNa--~~KLt~~L~t~y~~ 544 (1157)
T KOG0386|consen 471 QKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK----DKALLSKISWKYMIIDEGHRMKNA--ICKLTDTLNTHYRA 544 (1157)
T ss_pred eeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC----CHHHHhccCCcceeecccccccch--hhHHHHHhhccccc
Confidence 43 3333221 2367899999987653 333344 4568999999998653 22222222212223
Q ss_pred CcEEEEcccCCC
Q psy6275 195 VRFVFLSATIPN 206 (391)
Q Consensus 195 ~~~i~~SAT~~~ 206 (391)
...+++|+|+..
T Consensus 545 q~RLLLTGTPLQ 556 (1157)
T KOG0386|consen 545 QRRLLLTGTPLQ 556 (1157)
T ss_pred hhhhhhcCChhh
Confidence 456777888643
|
|
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0017 Score=62.38 Aligned_cols=124 Identities=14% Similarity=0.120 Sum_probs=68.9
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHH----hcCCeEEEEc--ccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEE
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSL----KQSQRVIYTT--PIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIM 145 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l----~~~~~vlvl~--P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~ 145 (391)
++.++++||||+|||++..-.+.... ..+.+|.++. +.|.-+.++...+.+..+ +.+ ..+-
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lg-vpv------------~~~~ 240 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMG-IPV------------KAIE 240 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCC-cce------------EeeC
Confidence 35689999999999998754433322 1345555554 445555544444444331 111 1222
Q ss_pred cHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHH---HHHhCCC-CcEEEEcccCCChHHHHHHhc
Q psy6275 146 TTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEET---LILLSDN-VRFVFLSATIPNASQFAQWVS 215 (391)
Q Consensus 146 Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i---~~~~~~~-~~~i~~SAT~~~~~~~~~~l~ 215 (391)
+++.+...+.. +.+.+++++|++.+.... ...+..+ +...... -.++.+|||.. ..++.+.+.
T Consensus 241 ~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~--~~~l~el~~~l~~~~~~~e~~LVlsat~~-~~~~~~~~~ 307 (388)
T PRK12723 241 SFKDLKEEITQ----SKDFDLVLVDTIGKSPKD--FMKLAEMKELLNACGRDAEFHLAVSSTTK-TSDVKEIFH 307 (388)
T ss_pred cHHHHHHHHHH----hCCCCEEEEcCCCCCccC--HHHHHHHHHHHHhcCCCCeEEEEEcCCCC-HHHHHHHHH
Confidence 45555554433 357999999999987422 1123333 3333322 35678999985 444444443
|
|
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0019 Score=58.04 Aligned_cols=35 Identities=20% Similarity=0.204 Sum_probs=26.0
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEc
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTT 107 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~ 107 (391)
..+++.||+|+|||.............+.+++|+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~ 76 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP 76 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 35899999999999876655555555677777763
|
|
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0013 Score=59.08 Aligned_cols=37 Identities=16% Similarity=0.183 Sum_probs=26.5
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcc
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTP 108 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P 108 (391)
+.+++++||+|+|||.............+.+++|+.-
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~ 81 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPL 81 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEH
Confidence 3679999999999998765544444445667777643
|
|
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00073 Score=60.73 Aligned_cols=94 Identities=14% Similarity=0.156 Sum_probs=53.2
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILRN 152 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l~~ 152 (391)
..++++||+|+|||........+....+.+++|+.. .++.... ..+.+
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~-~~~~~~~-------------------------------~~~~~ 93 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPL-AELLDRG-------------------------------PELLD 93 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeH-HHHHhhh-------------------------------HHHHH
Confidence 468899999999998754443333345667777643 4433210 11111
Q ss_pred HHhcCccccCccceEEEecccccCcc-ccchhHHHHHHHhCCCCcEEEEcccCC
Q psy6275 153 MLYRGSEITREVGWVIFDEIHYMRDK-ERGYVWEETLILLSDNVRFVFLSATIP 205 (391)
Q Consensus 153 ~l~~~~~~l~~~~~lViDE~h~~~~~-~~~~~~~~i~~~~~~~~~~i~~SAT~~ 205 (391)
.+.+.+++|+|++|.+... .....+-.++..+......+++|++.+
T Consensus 94 -------~~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~ 140 (234)
T PRK05642 94 -------NLEQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKS 140 (234)
T ss_pred -------hhhhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCC
Confidence 1336789999999977432 222334445544443334556666643
|
|
| >KOG1805|consensus | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00042 Score=71.44 Aligned_cols=117 Identities=15% Similarity=0.143 Sum_probs=79.3
Q ss_pred CCcHHHHHHHHHHhcCC-cEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeee----
Q psy6275 57 VLDPFQKEAILCIENNQ-SVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLIT---- 131 (391)
Q Consensus 57 ~~~~~Q~~~i~~i~~~~-~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~---- 131 (391)
.++.-|++|+..++..+ ..+|.|=+|+|||.+....+--.+..+.+||..+-|...++.+.-++....-.+.-+.
T Consensus 669 ~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~gkkVLLtsyThsAVDNILiKL~~~~i~~lRLG~~~k 748 (1100)
T KOG1805|consen 669 RLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVALGKKVLLTSYTHSAVDNILIKLKGFGIYILRLGSEEK 748 (1100)
T ss_pred hcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHHcCCeEEEEehhhHHHHHHHHHHhccCcceeecCCccc
Confidence 38899999998776554 5789999999999987666655666799999999999999999888876653211111
Q ss_pred -----------CCccc---------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCc
Q psy6275 132 -----------GDVTI---------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRD 177 (391)
Q Consensus 132 -----------g~~~~---------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~ 177 (391)
.+... -.++.|+.+|---+..-+. ..+.+|++|+|||-.++.
T Consensus 749 ih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf----~~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 749 IHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLF----VNRQFDYCIIDEASQILL 810 (1100)
T ss_pred cchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhh----hccccCEEEEcccccccc
Confidence 11110 1235566666422211111 234799999999997743
|
|
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0017 Score=56.56 Aligned_cols=122 Identities=15% Similarity=0.112 Sum_probs=67.1
Q ss_pred cEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEc--ccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTT--PIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILR 151 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~--P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l~ 151 (391)
-++++||||+|||++..-.+.+...++.++.+++ ..|.-+.++.+.+.+..+ +.+...... ..|..+.
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~-vp~~~~~~~---------~~~~~~~ 72 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILG-VPFYVARTE---------SDPAEIA 72 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHT-EEEEESSTT---------SCHHHHH
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhc-cccchhhcc---------hhhHHHH
Confidence 4789999999999987554444444466666654 346666666666666553 211111000 0133222
Q ss_pred -HHHhcCccccCccceEEEecccccCcc-ccchhHHHHHHHhCCCCcEEEEcccCCCh
Q psy6275 152 -NMLYRGSEITREVGWVIFDEIHYMRDK-ERGYVWEETLILLSDNVRFVFLSATIPNA 207 (391)
Q Consensus 152 -~~l~~~~~~l~~~~~lViDE~h~~~~~-~~~~~~~~i~~~~~~~~~~i~~SAT~~~~ 207 (391)
+.+... .-++++++++|-+.+.... ..-..+..++....+..-.+.+|||....
T Consensus 73 ~~~l~~~--~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~ 128 (196)
T PF00448_consen 73 REALEKF--RKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQE 128 (196)
T ss_dssp HHHHHHH--HHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGH
T ss_pred HHHHHHH--hhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChH
Confidence 233221 1236899999999865321 12233445555665556678899998654
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0012 Score=60.56 Aligned_cols=45 Identities=20% Similarity=0.262 Sum_probs=30.3
Q ss_pred cEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYRE 119 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~ 119 (391)
.+++.|++|+|||..+...+-..+..+..++++ +..++..++...
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~-~~~~ll~~i~~~ 160 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIEKGVPVIFV-NFPQLLNRIKST 160 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE-EHHHHHHHHHHH
Confidence 499999999999988665544444555566555 556666555433
|
|
| >KOG2340|consensus | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00051 Score=66.38 Aligned_cols=125 Identities=16% Similarity=0.181 Sum_probs=84.7
Q ss_pred CCcHHHHHHHHHHhcCCcEEEE-ecCCcch--HHHHHHHHHHHHh-------------------------------cCCe
Q psy6275 57 VLDPFQKEAILCIENNQSVLVS-AHTSAGK--TVVAEYAIASSLK-------------------------------QSQR 102 (391)
Q Consensus 57 ~~~~~Q~~~i~~i~~~~~~li~-apTGsGK--T~~~~~~~~~~l~-------------------------------~~~~ 102 (391)
.+|+.|.+.+..+.+-++++.. ..-+.|+ +-.|++-+++++- ..++
T Consensus 216 pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tRpk 295 (698)
T KOG2340|consen 216 PLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTRPK 295 (698)
T ss_pred cchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCCce
Confidence 5999999999999888887532 2223444 4456666666551 1368
Q ss_pred EEEEcccHHHHHHHHHHHHHhcc-----c--c-------eeeeCCccc--------------------------------
Q psy6275 103 VIYTTPIKALSNQKYREFEEQFK-----D--V-------GLITGDVTI-------------------------------- 136 (391)
Q Consensus 103 vlvl~P~~~L~~q~~~~~~~~~~-----~--v-------~~~~g~~~~-------------------------------- 136 (391)
|||++|+|+-|-.+...+..++. + | +-..|+...
T Consensus 296 VLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ftkK 375 (698)
T KOG2340|consen 296 VLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFTKK 375 (698)
T ss_pred EEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHHHH
Confidence 99999999999999999988843 0 0 112221110
Q ss_pred -------CCCCCEEEEcHHHHHHHHhc------CccccCccceEEEecccccCccccc
Q psy6275 137 -------NPSSSCLIMTTEILRNMLYR------GSEITREVGWVIFDEIHYMRDKERG 181 (391)
Q Consensus 137 -------~~~~~I~v~Tp~~l~~~l~~------~~~~l~~~~~lViDE~h~~~~~~~~ 181 (391)
-.+.+|+||+|=-|...+.+ ...+++.+.++|+|-+|.++...+.
T Consensus 376 tikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNwE 433 (698)
T KOG2340|consen 376 TIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNWE 433 (698)
T ss_pred HHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhHH
Confidence 01368999999766655552 2357889999999999998765433
|
|
| >PRK08903 DnaA regulatory inactivator Hda; Validated | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0022 Score=57.32 Aligned_cols=36 Identities=8% Similarity=0.173 Sum_probs=26.1
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEc
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTT 107 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~ 107 (391)
++.+++.||+|+|||..+.....+....+..++++.
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~ 77 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLD 77 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 467999999999999876555555445566666664
|
|
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0044 Score=59.14 Aligned_cols=116 Identities=15% Similarity=0.132 Sum_probs=66.0
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEc--ccHH-HHHHHHHHHHHhcccceeeeCCcccCCCCCEE-EEcHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTT--PIKA-LSNQKYREFEEQFKDVGLITGDVTINPSSSCL-IMTTE 148 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~--P~~~-L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~-v~Tp~ 148 (391)
+.+.++||||+|||+.....+......+.++.++. |.|. .+.|+. .+.+.. +..++ +.+|.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk-~yae~l--------------gipv~v~~d~~ 306 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQ-DYVKTI--------------GFEVIAVRDEA 306 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHH-HHhhhc--------------CCcEEecCCHH
Confidence 56889999999999987555555555666776664 3342 333432 222221 12233 34677
Q ss_pred HHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHh---CCCCcEEEEcccCCC
Q psy6275 149 ILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILL---SDNVRFVFLSATIPN 206 (391)
Q Consensus 149 ~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~---~~~~~~i~~SAT~~~ 206 (391)
.+...+..... -.+++++++|-+-+.... ...+..+...+ .+..-++.+|||...
T Consensus 307 ~L~~aL~~lk~-~~~~DvVLIDTaGRs~kd--~~lm~EL~~~lk~~~PdevlLVLsATtk~ 364 (436)
T PRK11889 307 AMTRALTYFKE-EARVDYILIDTAGKNYRA--SETVEEMIETMGQVEPDYICLTLSASMKS 364 (436)
T ss_pred HHHHHHHHHHh-ccCCCEEEEeCccccCcC--HHHHHHHHHHHhhcCCCeEEEEECCccCh
Confidence 76655543211 125899999999875422 23344444333 333345668998643
|
|
| >PRK11823 DNA repair protein RadA; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0018 Score=63.85 Aligned_cols=151 Identities=15% Similarity=0.162 Sum_probs=81.1
Q ss_pred eeeeeecccCccccceeEEeeehhchhceeccCCCCCcccccccccCCCCccCCC-----CCcHHHHHHHHHHhc-----
Q psy6275 2 IYYCLFCRESKTKACMKVIVVETLEACLHEVALPPDLEYQPLAQSKEKPAREYPF-----VLDPFQKEAILCIEN----- 71 (391)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----~~~~~Q~~~i~~i~~----- 71 (391)
.|.|..||.....-...=.....|....++.. ... .. ...-...+.+... -+|.+ .-++.++.
T Consensus 7 ~y~C~~Cg~~~~~~~g~Cp~C~~w~t~~e~~~-~~~-~~---~~~~~~~~~~~~~~~~~ri~TGi--~~LD~~LgGGi~~ 79 (446)
T PRK11823 7 AYVCQECGAESPKWLGRCPECGAWNTLVEEVA-ASK-AG---SSKPVQPLSDIEAEEEPRISTGI--GELDRVLGGGLVP 79 (446)
T ss_pred eEECCcCCCCCcccCeeCcCCCCccceeeecc-ccc-cc---CCCCceehhhcccccCCcccCCc--HHHHHHhcCCccC
Confidence 49999999766554444444444666555431 100 00 0000000111110 12222 23444443
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEc---HH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMT---TE 148 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~T---p~ 148 (391)
|.-+++.|++|+|||+..+..+......+.+++|+.- .+-..|+..+..++..... ++.+.. -+
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~-Ees~~qi~~ra~rlg~~~~------------~l~~~~e~~l~ 146 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSG-EESASQIKLRAERLGLPSD------------NLYLLAETNLE 146 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc-cccHHHHHHHHHHcCCChh------------cEEEeCCCCHH
Confidence 4568999999999999876666655556789999874 4445566555554432110 122322 23
Q ss_pred HHHHHHhcCccccCccceEEEecccccCc
Q psy6275 149 ILRNMLYRGSEITREVGWVIFDEIHYMRD 177 (391)
Q Consensus 149 ~l~~~l~~~~~~l~~~~~lViDE~h~~~~ 177 (391)
.+...+.+ .+.+++|+|+++.+..
T Consensus 147 ~i~~~i~~-----~~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 147 AILATIEE-----EKPDLVVIDSIQTMYS 170 (446)
T ss_pred HHHHHHHh-----hCCCEEEEechhhhcc
Confidence 44444422 2678999999997743
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0047 Score=60.42 Aligned_cols=118 Identities=14% Similarity=0.110 Sum_probs=63.6
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHH--hcCCeEEEEc--ccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSL--KQSQRVIYTT--PIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTT 147 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l--~~~~~vlvl~--P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp 147 (391)
++.+++.||||+|||++....+.... ..+.+|.++. |.+.-+.+....+.+..+ + +-..+.++
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~-v------------p~~~~~~~ 287 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMG-I------------PVEVVYDP 287 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhC-C------------ceEccCCH
Confidence 46789999999999987654443332 3455666664 334333333333333221 1 01123355
Q ss_pred HHHHHHHhcCccccCccceEEEecccccCcc-ccchhHHHHHHHh-CCCCcEEEEcccCCC
Q psy6275 148 EILRNMLYRGSEITREVGWVIFDEIHYMRDK-ERGYVWEETLILL-SDNVRFVFLSATIPN 206 (391)
Q Consensus 148 ~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~-~~~~~~~~i~~~~-~~~~~~i~~SAT~~~ 206 (391)
+.+...+.. +...++|+||.+-..... .....+..++... ......+.+|||...
T Consensus 288 ~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~ 344 (424)
T PRK05703 288 KELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY 344 (424)
T ss_pred HhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH
Confidence 555555543 346899999999764321 1112233333311 122447778998743
|
|
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0011 Score=59.36 Aligned_cols=94 Identities=13% Similarity=0.118 Sum_probs=53.6
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILRN 152 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l~~ 152 (391)
..++++||+|+|||.......-....++.+++|+.-.. . ... .++ +..
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~-~-~~~-----------------------------~~~-~~~ 87 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSK-S-QYF-----------------------------SPA-VLE 87 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHH-h-hhh-----------------------------hHH-HHh
Confidence 34789999999999876655555555666776664321 0 000 001 111
Q ss_pred HHhcCccccCccceEEEecccccCcc-ccchhHHHHHHHhC-CCCcEEEEcccCC
Q psy6275 153 MLYRGSEITREVGWVIFDEIHYMRDK-ERGYVWEETLILLS-DNVRFVFLSATIP 205 (391)
Q Consensus 153 ~l~~~~~~l~~~~~lViDE~h~~~~~-~~~~~~~~i~~~~~-~~~~~i~~SAT~~ 205 (391)
.+.+.+++++||+|.+... .+...+-.++.... .+.+++++|++.+
T Consensus 88 -------~~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~ 135 (229)
T PRK06893 88 -------NLEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCS 135 (229)
T ss_pred -------hcccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 1347789999999987532 11222333343332 3456677777754
|
|
| >TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0022 Score=73.71 Aligned_cols=137 Identities=13% Similarity=0.124 Sum_probs=83.5
Q ss_pred CCCCcHHHHHHHHHHhcC--CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeC
Q psy6275 55 PFVLDPFQKEAILCIENN--QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITG 132 (391)
Q Consensus 55 ~~~~~~~Q~~~i~~i~~~--~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g 132 (391)
++.+++-|.+|+..+... +-.++.|+.|+|||.+.-.....+-..+.+|+.++||-.-+..+.+........+.-+.+
T Consensus 427 ~~~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~~l~~~~~~~G~~V~~lAPTgrAA~~L~e~~g~~A~Ti~~~l~ 506 (1960)
T TIGR02760 427 EFALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQLLLHLASEQGYEIQIITAGSLSAQELRQKIPRLASTFITWVK 506 (1960)
T ss_pred cCCCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHhcchhhhHHHHHH
Confidence 567999999999987653 678999999999998754333223345889999999998776665443222111110000
Q ss_pred CcccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHh-CCCCcEEEEccc
Q psy6275 133 DVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILL-SDNVRFVFLSAT 203 (391)
Q Consensus 133 ~~~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~-~~~~~~i~~SAT 203 (391)
.. . ......|...+ + .....+..-++|||||+.++. ...+..++... +.+.++|++.=+
T Consensus 507 ~l--~--~~~~~~tv~~f---l-~~~~~l~~~~vlIVDEAsMl~----~~~~~~Ll~~a~~~garvVlvGD~ 566 (1960)
T TIGR02760 507 NL--F--NDDQDHTVQGL---L-DKSSPFSNKDIFVVDEANKLS----NNELLKLIDKAEQHNSKLILLNDS 566 (1960)
T ss_pred hh--c--ccccchhHHHh---h-cccCCCCCCCEEEEECCCCCC----HHHHHHHHHHHhhcCCEEEEEcCh
Confidence 00 0 00011122222 2 222334577899999999774 33455666654 467888887554
|
This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein. |
| >KOG0388|consensus | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0011 Score=66.33 Aligned_cols=143 Identities=15% Similarity=0.216 Sum_probs=95.0
Q ss_pred CCCcHHHHHHHHHH----hcCCcEEEEecCCcchHHHHHHHHHHHHhc---CCeEEEEcccHHHHHHHHHHHHHhcccce
Q psy6275 56 FVLDPFQKEAILCI----ENNQSVLVSAHTSAGKTVVAEYAIASSLKQ---SQRVIYTTPIKALSNQKYREFEEQFKDVG 128 (391)
Q Consensus 56 ~~~~~~Q~~~i~~i----~~~~~~li~apTGsGKT~~~~~~~~~~l~~---~~~vlvl~P~~~L~~q~~~~~~~~~~~v~ 128 (391)
.++.++|.+.+..+ ..|-|.|+.-..|-|||...+..+.+.... -+..||++|...| +.+++++.+++....
T Consensus 566 ctLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAhLaE~~nIwGPFLVVtpaStL-~NWaqEisrFlP~~k 644 (1185)
T KOG0388|consen 566 CTLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAHLAETHNIWGPFLVVTPASTL-HNWAQEISRFLPSFK 644 (1185)
T ss_pred hhhHHHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHHHHHhccCCCceEEeehHHHH-hHHHHHHHHhCccce
Confidence 45778999988765 468899999999999998754443333222 3678999997776 567788888887433
Q ss_pred e--eeCCccc----------------CCCCCEEEEcHHHHHH---HHhcCccccCccceEEEecccccCccccchhHHHH
Q psy6275 129 L--ITGDVTI----------------NPSSSCLIMTTEILRN---MLYRGSEITREVGWVIFDEIHYMRDKERGYVWEET 187 (391)
Q Consensus 129 ~--~~g~~~~----------------~~~~~I~v~Tp~~l~~---~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i 187 (391)
+ +.|+... +...+|+|++++.+.. ++.+ -+..+.|+|||+.+-. +....|..+
T Consensus 645 ~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDeky~qk-----vKWQYMILDEAQAIKS-SsS~RWKtL 718 (1185)
T KOG0388|consen 645 VLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEKYLQK-----VKWQYMILDEAQAIKS-SSSSRWKTL 718 (1185)
T ss_pred eecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechHHHHHh-----hhhhheehhHHHHhhh-hhhhHHHHH
Confidence 3 4454331 2245788888876542 2211 1567999999998744 235556655
Q ss_pred HHHhCCCCcEEEEcccCCCh
Q psy6275 188 LILLSDNVRFVFLSATIPNA 207 (391)
Q Consensus 188 ~~~~~~~~~~i~~SAT~~~~ 207 (391)
++.- .+-.+++|+|+-..
T Consensus 719 LsF~--cRNRLLLTGTPIQN 736 (1185)
T KOG0388|consen 719 LSFK--CRNRLLLTGTPIQN 736 (1185)
T ss_pred hhhh--ccceeeecCCccch
Confidence 5532 24468889997543
|
|
| >COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0021 Score=59.81 Aligned_cols=136 Identities=18% Similarity=0.217 Sum_probs=82.3
Q ss_pred CccCCCC-CcHHHHHHHHHHhcC--CcEEEEecCCcchHHHHHHHHHHHH---hcCCeEEEEcccHHHHHHHHHHHHHhc
Q psy6275 51 AREYPFV-LDPFQKEAILCIENN--QSVLVSAHTSAGKTVVAEYAIASSL---KQSQRVIYTTPIKALSNQKYREFEEQF 124 (391)
Q Consensus 51 ~~~~~~~-~~~~Q~~~i~~i~~~--~~~li~apTGsGKT~~~~~~~~~~l---~~~~~vlvl~P~~~L~~q~~~~~~~~~ 124 (391)
-+.+|.. -+..|.-|+..++.. .-+.+.|+-|+|||+.++.+.+... +...+++|.=|+..+..+
T Consensus 221 ~~vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~d--------- 291 (436)
T COG1875 221 QEVWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGED--------- 291 (436)
T ss_pred hhhhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccc---------
Confidence 3456777 556777888887765 3477999999999998877766654 234678888787766532
Q ss_pred ccceeeeCCcccCCC-------------CCEEEEcHHHHHHHHhcCccccCc----------cceEEEecccccCccccc
Q psy6275 125 KDVGLITGDVTINPS-------------SSCLIMTTEILRNMLYRGSEITRE----------VGWVIFDEIHYMRDKERG 181 (391)
Q Consensus 125 ~~v~~~~g~~~~~~~-------------~~I~v~Tp~~l~~~l~~~~~~l~~----------~~~lViDE~h~~~~~~~~ 181 (391)
+|.+-|.....-. .+.==++.+.+...+.+....+.. =.++|+|||+.+- .
T Consensus 292 --IGfLPG~eEeKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLT----p 365 (436)
T COG1875 292 --IGFLPGTEEEKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLT----P 365 (436)
T ss_pred --cCcCCCchhhhccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccC----H
Confidence 3344333221100 000011233444444433322211 2489999999874 3
Q ss_pred hhHHHHHHHhCCCCcEEEEc
Q psy6275 182 YVWEETLILLSDNVRFVFLS 201 (391)
Q Consensus 182 ~~~~~i~~~~~~~~~~i~~S 201 (391)
..+.-++.+.+.+.+++++.
T Consensus 366 heikTiltR~G~GsKIVl~g 385 (436)
T COG1875 366 HELKTILTRAGEGSKIVLTG 385 (436)
T ss_pred HHHHHHHHhccCCCEEEEcC
Confidence 35667788888888887753
|
|
| >COG3587 Restriction endonuclease [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0011 Score=67.77 Aligned_cols=131 Identities=18% Similarity=0.164 Sum_probs=73.6
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHhc--CCeEEEEcccHHHHHHHHHH---HHHhc-c------cceeeeCCc------
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLKQ--SQRVIYTTPIKALSNQKYRE---FEEQF-K------DVGLITGDV------ 134 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~~--~~~vlvl~P~~~L~~q~~~~---~~~~~-~------~v~~~~g~~------ 134 (391)
-|+=|.+.||+|||.+|+-.+...=+. -.+.+|+||+.+.-.-+... ..+.+ + +...+.-+.
T Consensus 75 lNiDI~METGTGKTy~YlrtmfeLhk~YG~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~~~~~~~~ 154 (985)
T COG3587 75 LNIDILMETGTGKTYTYLRTMFELHKKYGLFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYDEDIEKFK 154 (985)
T ss_pred ceeeEEEecCCCceeeHHHHHHHHHHHhCceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeechHHHHHh
Confidence 367799999999999997766554332 35899999998875553333 33333 1 122221111
Q ss_pred -ccCCCCCEEEEcHHHHHH------HHhcCcc-----------c---cCcc-ceEEEecccccCccccchhHHHHHHHhC
Q psy6275 135 -TINPSSSCLIMTTEILRN------MLYRGSE-----------I---TREV-GWVIFDEIHYMRDKERGYVWEETLILLS 192 (391)
Q Consensus 135 -~~~~~~~I~v~Tp~~l~~------~l~~~~~-----------~---l~~~-~~lViDE~h~~~~~~~~~~~~~i~~~~~ 192 (391)
..+..+.+++.|...+.. ++.+... + +... -.+|+||-|.|... ...+..+....|
T Consensus 155 ~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~rPIvIvDEPh~f~~~--~k~~~~i~~l~p 232 (985)
T COG3587 155 FKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMRPIVIVDEPHRFLGD--DKTYGAIKQLNP 232 (985)
T ss_pred hccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcCCEEEecChhhcccc--hHHHHHHHhhCc
Confidence 112345666666543321 1111111 1 1111 27999999998643 444444444333
Q ss_pred CCCcEEEEcccCCCh
Q psy6275 193 DNVRFVFLSATIPNA 207 (391)
Q Consensus 193 ~~~~~i~~SAT~~~~ 207 (391)
.-++-++||.++.
T Consensus 233 --l~ilRfgATfkd~ 245 (985)
T COG3587 233 --LLILRFGATFKDE 245 (985)
T ss_pred --eEEEEecccchhh
Confidence 4467799998754
|
|
| >PRK09183 transposase/IS protein; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0052 Score=56.06 Aligned_cols=47 Identities=23% Similarity=0.253 Sum_probs=33.9
Q ss_pred HhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHH
Q psy6275 69 IENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQK 116 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~ 116 (391)
+..+.++++.||+|+|||..+..........+.+++++ +..+|..++
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~-~~~~l~~~l 145 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFT-TAADLLLQL 145 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE-eHHHHHHHH
Confidence 56788999999999999987765555555567778776 344555444
|
|
| >PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00047 Score=66.23 Aligned_cols=107 Identities=21% Similarity=0.266 Sum_probs=65.8
Q ss_pred CcHHHHHHHHHH------hcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHH--HHHHHHhccccee
Q psy6275 58 LDPFQKEAILCI------ENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQK--YREFEEQFKDVGL 129 (391)
Q Consensus 58 ~~~~Q~~~i~~i------~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~--~~~~~~~~~~v~~ 129 (391)
+++-|++++..+ ..+.++++.|+-|+|||+.+-...-..-..+..+++++||-.-|..+ -..+...++ +.+
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~~i~~G~T~hs~f~-i~~ 80 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAFNIPGGRTIHSFFG-IPI 80 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHHhccCCcchHHhcC-ccc
Confidence 678899998877 67889999999999999986443333333467899999998776655 222333332 111
Q ss_pred eeCCcccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCc
Q psy6275 130 ITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRD 177 (391)
Q Consensus 130 ~~g~~~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~ 177 (391)
- . ...... .+.. .......++..+++|+||+-++..
T Consensus 81 ~--~---~~~~~~---~~~~----~~~~~~~l~~~~~lIiDEism~~~ 116 (364)
T PF05970_consen 81 N--N---NEKSQC---KISK----NSRLRERLRKADVLIIDEISMVSA 116 (364)
T ss_pred c--c---cccccc---cccc----cchhhhhhhhheeeecccccchhH
Confidence 0 0 000011 1111 011123467899999999987643
|
The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ]. |
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0093 Score=56.83 Aligned_cols=124 Identities=16% Similarity=0.184 Sum_probs=71.6
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHH--HhcCCeEEEE-c-ccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASS--LKQSQRVIYT-T-PIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTT 147 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~--l~~~~~vlvl-~-P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp 147 (391)
++.+.++||||.|||++..-.+.+. +....+|-++ . ..|--|.++.+.+.+..+ + +-.++-+|
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~-v------------p~~vv~~~ 269 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMG-V------------PLEVVYSP 269 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhC-C------------ceEEecCH
Confidence 6789999999999999864333332 2344444444 3 345555555566665552 1 12445567
Q ss_pred HHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHh---CCCCcEEEEcccCCChHHHHHHhc
Q psy6275 148 EILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILL---SDNVRFVFLSATIPNASQFAQWVS 215 (391)
Q Consensus 148 ~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~---~~~~~~i~~SAT~~~~~~~~~~l~ 215 (391)
.-+...+. .+++.++|.+|=+-+-... ...+..+...+ ..---.+.+|||.. .+++.+.+.
T Consensus 270 ~el~~ai~----~l~~~d~ILVDTaGrs~~D--~~~i~el~~~~~~~~~i~~~Lvlsat~K-~~dlkei~~ 333 (407)
T COG1419 270 KELAEAIE----ALRDCDVILVDTAGRSQYD--KEKIEELKELIDVSHSIEVYLVLSATTK-YEDLKEIIK 333 (407)
T ss_pred HHHHHHHH----HhhcCCEEEEeCCCCCccC--HHHHHHHHHHHhccccceEEEEEecCcc-hHHHHHHHH
Confidence 66665554 3667899999999763211 22233333333 23344677899974 444555443
|
|
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0032 Score=56.06 Aligned_cols=36 Identities=17% Similarity=0.307 Sum_probs=25.3
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEE
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYT 106 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl 106 (391)
.+.++++.||+|+|||..+..........+..++++
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i 72 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYL 72 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEE
Confidence 356899999999999988765554444444555554
|
Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. |
| >PHA02533 17 large terminase protein; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0018 Score=64.95 Aligned_cols=141 Identities=11% Similarity=0.167 Sum_probs=84.2
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHH-HH-HhcCCeEEEEcccHHHHHHHHHHHHHhcccc----
Q psy6275 54 YPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIA-SS-LKQSQRVIYTTPIKALSNQKYREFEEQFKDV---- 127 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~-~~-l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v---- 127 (391)
.+|.|.|+|...+..+..++-.++..+-..|||.+....++ .. ...+..+++++|+..-+..+++.++......
T Consensus 56 ~Pf~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~l~ 135 (534)
T PHA02533 56 IKVQMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHKASMAAEVLDRTKQAIELLPDFL 135 (534)
T ss_pred eecCCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHhCHHHh
Confidence 46889999999998876666678888899999998754332 22 3556799999999999999988887654411
Q ss_pred --eeeeC-C--cccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCC--CCcEEEE
Q psy6275 128 --GLITG-D--VTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSD--NVRFVFL 200 (391)
Q Consensus 128 --~~~~g-~--~~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~--~~~~i~~ 200 (391)
++... . ........|.+.|.. .....=...+++++||+|.+.+. ...+..+...+.. ..+++..
T Consensus 136 ~~~i~~~~~~~I~l~NGS~I~~lss~-------~~t~rG~~~~~liiDE~a~~~~~--~e~~~ai~p~lasg~~~r~iii 206 (534)
T PHA02533 136 QPGIVEWNKGSIELENGSKIGAYASS-------PDAVRGNSFAMIYIDECAFIPNF--IDFWLAIQPVISSGRSSKIIIT 206 (534)
T ss_pred hcceeecCccEEEeCCCCEEEEEeCC-------CCccCCCCCceEEEeccccCCCH--HHHHHHHHHHHHcCCCceEEEE
Confidence 11110 0 001223334333321 00001115678999999987542 2344444433332 2345454
Q ss_pred ccc
Q psy6275 201 SAT 203 (391)
Q Consensus 201 SAT 203 (391)
|+.
T Consensus 207 STp 209 (534)
T PHA02533 207 STP 209 (534)
T ss_pred ECC
Confidence 444
|
|
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.01 Score=56.08 Aligned_cols=122 Identities=14% Similarity=0.080 Sum_probs=64.9
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEccc--HH-HHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPI--KA-LSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEI 149 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~--~~-L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~ 149 (391)
.-++++|++|+|||++....+......+.+++++..- |. ...|+ ..+....+ +.+..+... ..|..
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL-~~~a~~lg-v~v~~~~~g---------~dp~~ 209 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQL-EEHAERLG-VKVIKHKYG---------ADPAA 209 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHH-HHHHHHcC-CceecccCC---------CCHHH
Confidence 3578999999999997654444333456677776532 33 33444 33333222 111111100 01222
Q ss_pred -HHHHHhcCccccCccceEEEecccccCc-cccchhHHHHHHHhCCCCcEEEEcccCCCh
Q psy6275 150 -LRNMLYRGSEITREVGWVIFDEIHYMRD-KERGYVWEETLILLSDNVRFVFLSATIPNA 207 (391)
Q Consensus 150 -l~~~l~~~~~~l~~~~~lViDE~h~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~ 207 (391)
+.+.+... .....++|++|.+..+.. ...-..+..+.....+...++.++||..+.
T Consensus 210 v~~~ai~~~--~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d 267 (336)
T PRK14974 210 VAYDAIEHA--KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGND 267 (336)
T ss_pred HHHHHHHHH--HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchh
Confidence 22222211 123678999999998742 222233444444455667788889987543
|
|
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0026 Score=56.54 Aligned_cols=103 Identities=18% Similarity=0.293 Sum_probs=58.1
Q ss_pred cEEEEecCCcchHHHHHHHHHHHH-h--cCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASSL-K--QSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEIL 150 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~l-~--~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l 150 (391)
.+++.||+|+|||-. +.++.+.+ . ++.+|+|+.. .+........+... ..+.+
T Consensus 36 ~l~l~G~~G~GKTHL-L~Ai~~~~~~~~~~~~v~y~~~-~~f~~~~~~~~~~~----------------------~~~~~ 91 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHL-LQAIANEAQKQHPGKRVVYLSA-EEFIREFADALRDG----------------------EIEEF 91 (219)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHHHHHHCTTS-EEEEEH-HHHHHHHHHHHHTT----------------------SHHHH
T ss_pred ceEEECCCCCCHHHH-HHHHHHHHHhccccccceeecH-HHHHHHHHHHHHcc----------------------cchhh
Confidence 489999999999985 34443333 2 4667777743 45555544444320 12222
Q ss_pred HHHHhcCccccCccceEEEecccccCccc-cchhHHHHHHHh-CCCCcEEEEcccCCCh
Q psy6275 151 RNMLYRGSEITREVGWVIFDEIHYMRDKE-RGYVWEETLILL-SDNVRFVFLSATIPNA 207 (391)
Q Consensus 151 ~~~l~~~~~~l~~~~~lViDE~h~~~~~~-~~~~~~~i~~~~-~~~~~~i~~SAT~~~~ 207 (391)
.+ .+...+++++|++|.+.... ....+-.++..+ ..+.++|+.|...|..
T Consensus 92 ~~-------~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~ 143 (219)
T PF00308_consen 92 KD-------RLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSE 143 (219)
T ss_dssp HH-------HHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTT
T ss_pred hh-------hhhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCcc
Confidence 22 24589999999999986431 111222333332 3456777777676654
|
DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A. |
| >cd01121 Sms Sms (bacterial radA) DNA repair protein | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0022 Score=61.52 Aligned_cols=87 Identities=15% Similarity=0.153 Sum_probs=54.3
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEE---cHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIM---TTE 148 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~---Tp~ 148 (391)
|.-+++.|++|+|||+..+..+......+.+++|+.-. +-..|+..+..++.-.. .++.+. ..+
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~E-Es~~qi~~Ra~rlg~~~------------~~l~l~~e~~le 148 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGE-ESPEQIKLRADRLGIST------------ENLYLLAETNLE 148 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECC-cCHHHHHHHHHHcCCCc------------ccEEEEccCcHH
Confidence 46689999999999998766665555566789998654 33455554444432110 112222 234
Q ss_pred HHHHHHhcCccccCccceEEEecccccC
Q psy6275 149 ILRNMLYRGSEITREVGWVIFDEIHYMR 176 (391)
Q Consensus 149 ~l~~~l~~~~~~l~~~~~lViDE~h~~~ 176 (391)
.+.+.+.. .+.+++|||+++.+.
T Consensus 149 ~I~~~i~~-----~~~~lVVIDSIq~l~ 171 (372)
T cd01121 149 DILASIEE-----LKPDLVIIDSIQTVY 171 (372)
T ss_pred HHHHHHHh-----cCCcEEEEcchHHhh
Confidence 44444432 267899999999874
|
This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules. |
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0034 Score=59.89 Aligned_cols=117 Identities=19% Similarity=0.198 Sum_probs=63.2
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHH-hcC-CeEEEEcc--cHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEc
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSL-KQS-QRVIYTTP--IKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMT 146 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l-~~~-~~vlvl~P--~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~T 146 (391)
.++.++++||||+|||++....+.... ..+ .++.++.. .+.-+.+....+.+..+ + +-..+-+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~g-v------------~~~~~~~ 202 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG-V------------PVHAVKD 202 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcC-C------------ceEecCC
Confidence 367899999999999998765554443 334 35554432 23334444444444432 1 1122333
Q ss_pred HHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHh----CCCCcEEEEcccCCCh
Q psy6275 147 TEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILL----SDNVRFVFLSATIPNA 207 (391)
Q Consensus 147 p~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~----~~~~~~i~~SAT~~~~ 207 (391)
++.+...+. .+.+.++++||++-... +...+...+..+ .....++.+|||....
T Consensus 203 ~~~l~~~l~----~l~~~DlVLIDTaG~~~---~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~ 260 (374)
T PRK14722 203 GGDLQLALA----ELRNKHMVLIDTIGMSQ---RDRTVSDQIAMLHGADTPVQRLLLLNATSHGD 260 (374)
T ss_pred cccHHHHHH----HhcCCCEEEEcCCCCCc---ccHHHHHHHHHHhccCCCCeEEEEecCccChH
Confidence 433333332 24467999999997542 122233333333 1223478889998543
|
|
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.003 Score=62.54 Aligned_cols=75 Identities=17% Similarity=0.320 Sum_probs=46.3
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHhc--CCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLKQ--SQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEIL 150 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~~--~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l 150 (391)
+.+++.||+|+|||............. +.+++++ +..++..+....+... +.+.+
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi-~~~~~~~~~~~~~~~~----------------------~~~~~ 205 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYV-TSEKFTNDFVNALRNN----------------------TMEEF 205 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEE-EHHHHHHHHHHHHHcC----------------------cHHHH
Confidence 458999999999998765444444333 4567666 4455655554443210 11222
Q ss_pred HHHHhcCccccCccceEEEecccccCc
Q psy6275 151 RNMLYRGSEITREVGWVIFDEIHYMRD 177 (391)
Q Consensus 151 ~~~l~~~~~~l~~~~~lViDE~h~~~~ 177 (391)
.. .+.+.++|++||+|.+..
T Consensus 206 ~~-------~~~~~dlLiiDDi~~l~~ 225 (450)
T PRK00149 206 KE-------KYRSVDVLLIDDIQFLAG 225 (450)
T ss_pred HH-------HHhcCCEEEEehhhhhcC
Confidence 22 233688999999998753
|
|
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0011 Score=57.09 Aligned_cols=49 Identities=20% Similarity=0.188 Sum_probs=37.5
Q ss_pred EEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhc
Q psy6275 75 VLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQF 124 (391)
Q Consensus 75 ~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~ 124 (391)
+++.||+|+|||...+..+...+..+.+++|+.. .+-..++.+.+..+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~-e~~~~~~~~~~~~~g 50 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL-EESPEELIENAESLG 50 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEEC-CCCHHHHHHHHHHcC
Confidence 6899999999999887777777778888988854 455666666665553
|
A related protein is found in archaea. |
| >PRK08939 primosomal protein DnaI; Reviewed | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0035 Score=58.52 Aligned_cols=111 Identities=9% Similarity=0.085 Sum_probs=61.9
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILR 151 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l~ 151 (391)
++++++.||+|+|||..+...+......+..+.++ ...+++.++...+.. .+.+..+
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~-~~~~l~~~lk~~~~~----------------------~~~~~~l 212 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLL-HFPEFIRELKNSISD----------------------GSVKEKI 212 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEE-EHHHHHHHHHHHHhc----------------------CcHHHHH
Confidence 46899999999999998765555555566666655 333555555433211 0112222
Q ss_pred HHHhcCccccCccceEEEeccccc--CccccchhHHHHHHHh-CCCCcEEEEcccCCChHHHHHHh
Q psy6275 152 NMLYRGSEITREVGWVIFDEIHYM--RDKERGYVWEETLILL-SDNVRFVFLSATIPNASQFAQWV 214 (391)
Q Consensus 152 ~~l~~~~~~l~~~~~lViDE~h~~--~~~~~~~~~~~i~~~~-~~~~~~i~~SAT~~~~~~~~~~l 214 (391)
. .+.+.++|||||+... .++.+...+..++... .....+++ |.-++ ..++.+.+
T Consensus 213 ~-------~l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~-TSNl~-~~el~~~~ 269 (306)
T PRK08939 213 D-------AVKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFF-TSNFD-FDELEHHL 269 (306)
T ss_pred H-------HhcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEE-ECCCC-HHHHHHHH
Confidence 2 2458999999999854 2332323444454433 34444544 44442 23344443
|
|
| >KOG0989|consensus | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0011 Score=60.28 Aligned_cols=45 Identities=18% Similarity=0.248 Sum_probs=29.8
Q ss_pred ccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEcccCC
Q psy6275 160 ITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIP 205 (391)
Q Consensus 160 ~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 205 (391)
..+.++.+|+||||.|.... ...+...+...+...++++.+.-+.
T Consensus 126 ~~~~fKiiIlDEcdsmtsda-q~aLrr~mE~~s~~trFiLIcnyls 170 (346)
T KOG0989|consen 126 PCPPFKIIILDECDSMTSDA-QAALRRTMEDFSRTTRFILICNYLS 170 (346)
T ss_pred CCCcceEEEEechhhhhHHH-HHHHHHHHhccccceEEEEEcCChh
Confidence 44578999999999986432 2244455555566677777766543
|
|
| >PRK12402 replication factor C small subunit 2; Reviewed | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0044 Score=58.79 Aligned_cols=28 Identities=18% Similarity=0.275 Sum_probs=20.5
Q ss_pred HhcCC--cEEEEecCCcchHHHHHHHHHHH
Q psy6275 69 IENNQ--SVLVSAHTSAGKTVVAEYAIASS 96 (391)
Q Consensus 69 i~~~~--~~li~apTGsGKT~~~~~~~~~~ 96 (391)
+..++ ++++.||+|+|||..+.......
T Consensus 31 ~~~~~~~~lll~Gp~GtGKT~la~~~~~~l 60 (337)
T PRK12402 31 VDSPNLPHLLVQGPPGSGKTAAVRALAREL 60 (337)
T ss_pred HhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34455 79999999999998865554333
|
|
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0024 Score=53.27 Aligned_cols=38 Identities=24% Similarity=0.304 Sum_probs=29.1
Q ss_pred EEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHH
Q psy6275 75 VLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKAL 112 (391)
Q Consensus 75 ~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L 112 (391)
+++.||+|+|||......+......+..++++......
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcch
Confidence 68999999999998766666655667888888765444
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.012 Score=56.01 Aligned_cols=126 Identities=12% Similarity=0.134 Sum_probs=68.2
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEc--ccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCE-EEEcH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTT--PIKALSNQKYREFEEQFKDVGLITGDVTINPSSSC-LIMTT 147 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~--P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I-~v~Tp 147 (391)
.++.++++||+|+|||+...-.+.....++.++.++. |.|.-+..+...+.+.. + ..+ ...+|
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~l---g-----------vpv~~~~dp 270 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKL---D-----------VELIVATSP 270 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcC---C-----------CCEEecCCH
Confidence 4567899999999999887655555555666776664 34443333223332221 1 112 23467
Q ss_pred HHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHH---HhCCCCcEEEEcccCCChHHHHHHh
Q psy6275 148 EILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLI---LLSDNVRFVFLSATIPNASQFAQWV 214 (391)
Q Consensus 148 ~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~---~~~~~~~~i~~SAT~~~~~~~~~~l 214 (391)
+.+...+.... ..+..++|++|=+-+.... ...++.+.. ...+..-++.+||+.. ..+..+.+
T Consensus 271 ~dL~~al~~l~-~~~~~D~VLIDTAGr~~~d--~~~l~EL~~l~~~~~p~~~~LVLsag~~-~~d~~~i~ 336 (407)
T PRK12726 271 AELEEAVQYMT-YVNCVDHILIDTVGRNYLA--EESVSEISAYTDVVHPDLTCFTFSSGMK-SADVMTIL 336 (407)
T ss_pred HHHHHHHHHHH-hcCCCCEEEEECCCCCccC--HHHHHHHHHHhhccCCceEEEECCCccc-HHHHHHHH
Confidence 76655443221 1246899999999765321 223333332 2233333556777753 33444443
|
|
| >PRK14712 conjugal transfer nickase/helicase TraI; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.006 Score=67.89 Aligned_cols=124 Identities=16% Similarity=0.056 Sum_probs=76.7
Q ss_pred CCCCcHHHHHHHHHHhc--CCcEEEEecCCcchHHHH--HHHHHHHH--hcCCeEEEEcccHHHHHHHHHHHHHhcccce
Q psy6275 55 PFVLDPFQKEAILCIEN--NQSVLVSAHTSAGKTVVA--EYAIASSL--KQSQRVIYTTPIKALSNQKYREFEEQFKDVG 128 (391)
Q Consensus 55 ~~~~~~~Q~~~i~~i~~--~~~~li~apTGsGKT~~~--~~~~~~~l--~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~ 128 (391)
...+++-|.+|+..++. ++.+++.|..|+|||++. ++.++..+ ..+.+++.++||-.-+..+.+ ..
T Consensus 833 ~~~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa~~L~e----~G---- 904 (1623)
T PRK14712 833 MEKLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVGEMRS----AG---- 904 (1623)
T ss_pred hcccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHHHHHHH----hC----
Confidence 34699999999998874 478999999999999975 22233333 235789999999888776632 11
Q ss_pred eeeCCcccCCCCCEEEEcHHHHHHHH----hcCccccCccceEEEecccccCccccchhHHHHHHHhCC-CCcEEEEccc
Q psy6275 129 LITGDVTINPSSSCLIMTTEILRNML----YRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSD-NVRFVFLSAT 203 (391)
Q Consensus 129 ~~~g~~~~~~~~~I~v~Tp~~l~~~l----~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~-~~~~i~~SAT 203 (391)
+--.|-.+++... .........-+++||||+-++.. ..+..++..++. +.++|++.=+
T Consensus 905 -------------i~A~TIasfL~~~~~~~~~~~~~~~~~~llIVDEASMV~~----~~m~~ll~~~~~~garvVLVGD~ 967 (1623)
T PRK14712 905 -------------VDAQTLASFLHDTQLQQRSGETPDFSNTLFLLDESSMVGN----TDMARAYALIAAGGGRAVASGDT 967 (1623)
T ss_pred -------------chHhhHHHHhccccchhhcccCCCCCCcEEEEEccccccH----HHHHHHHHhhhhCCCEEEEEcch
Confidence 0011222222110 01111123468999999987743 344555555543 5778777655
|
|
| >PRK11054 helD DNA helicase IV; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0054 Score=63.54 Aligned_cols=68 Identities=22% Similarity=0.238 Sum_probs=54.1
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh----cCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy6275 56 FVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK----QSQRVIYTTPIKALSNQKYREFEEQFK 125 (391)
Q Consensus 56 ~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~----~~~~vlvl~P~~~L~~q~~~~~~~~~~ 125 (391)
..+++-|.+|+-. ...+++|.|+.|||||.+...-+...+. .+.++|+++.++..+.++.+++....+
T Consensus 195 ~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~lg 266 (684)
T PRK11054 195 SPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERLG 266 (684)
T ss_pred CCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhcC
Confidence 4599999999853 4467899999999999987655544443 245899999999999999999887653
|
|
| >PRK12422 chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0049 Score=60.68 Aligned_cols=104 Identities=15% Similarity=0.267 Sum_probs=57.5
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILRN 152 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l~~ 152 (391)
+.+++.||+|+|||.............+.+++|+.. ..+..+....+.. + ..+.+..
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~-~~f~~~~~~~l~~---------~-------------~~~~f~~ 198 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRS-ELFTEHLVSAIRS---------G-------------EMQRFRQ 198 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeH-HHHHHHHHHHHhc---------c-------------hHHHHHH
Confidence 358999999999998765444444445778888753 4454444333321 0 1122211
Q ss_pred HHhcCccccCccceEEEecccccCccc-cchhHHHHHHHh-CCCCcEEEEcccCCC
Q psy6275 153 MLYRGSEITREVGWVIFDEIHYMRDKE-RGYVWEETLILL-SDNVRFVFLSATIPN 206 (391)
Q Consensus 153 ~l~~~~~~l~~~~~lViDE~h~~~~~~-~~~~~~~i~~~~-~~~~~~i~~SAT~~~ 206 (391)
.+...+++++||+|.+.... ....+-.++..+ ..+.++++.|-+.|.
T Consensus 199 -------~~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~ 247 (445)
T PRK12422 199 -------FYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQ 247 (445)
T ss_pred -------HcccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHH
Confidence 13478999999999875421 111222333322 234566555544443
|
|
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0044 Score=60.54 Aligned_cols=75 Identities=16% Similarity=0.331 Sum_probs=44.4
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHhc--CCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLKQ--SQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEIL 150 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~~--~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l 150 (391)
..+++.||+|+|||.......-..... +.+++++. ...+..+....+.. + +.+.+
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~-~~~~~~~~~~~~~~---------~-------------~~~~~ 193 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS-SEKFTNDFVNALRN---------N-------------KMEEF 193 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE-HHHHHHHHHHHHHc---------C-------------CHHHH
Confidence 357899999999998764433333333 46777774 34454444333221 0 12233
Q ss_pred HHHHhcCccccCccceEEEecccccCc
Q psy6275 151 RNMLYRGSEITREVGWVIFDEIHYMRD 177 (391)
Q Consensus 151 ~~~l~~~~~~l~~~~~lViDE~h~~~~ 177 (391)
... +...++|++||+|.+..
T Consensus 194 ~~~-------~~~~dlLiiDDi~~l~~ 213 (405)
T TIGR00362 194 KEK-------YRSVDLLLIDDIQFLAG 213 (405)
T ss_pred HHH-------HHhCCEEEEehhhhhcC
Confidence 222 23578999999998754
|
DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). |
| >PRK13709 conjugal transfer nickase/helicase TraI; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.01 Score=66.90 Aligned_cols=125 Identities=16% Similarity=0.062 Sum_probs=77.2
Q ss_pred CCCCCcHHHHHHHHHHhc--CCcEEEEecCCcchHHHHH--HHHHHHHh--cCCeEEEEcccHHHHHHHHHHHHHhcccc
Q psy6275 54 YPFVLDPFQKEAILCIEN--NQSVLVSAHTSAGKTVVAE--YAIASSLK--QSQRVIYTTPIKALSNQKYREFEEQFKDV 127 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i~~--~~~~li~apTGsGKT~~~~--~~~~~~l~--~~~~vlvl~P~~~L~~q~~~~~~~~~~~v 127 (391)
.++.+++.|.+|+..++. ++-+++.|..|+|||+..- ..++..+. .+.+++.++||-.-+..+.+ ..
T Consensus 964 ~~~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L~e----~G--- 1036 (1747)
T PRK13709 964 LMEGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVGEMRS----AG--- 1036 (1747)
T ss_pred hcCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHHHHHHh----cC---
Confidence 345799999999998876 4679999999999998752 22233222 35679999999888766532 11
Q ss_pred eeeeCCcccCCCCCEEEEcHHHHHHHHh----cCccccCccceEEEecccccCccccchhHHHHHHHhCC-CCcEEEEcc
Q psy6275 128 GLITGDVTINPSSSCLIMTTEILRNMLY----RGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSD-NVRFVFLSA 202 (391)
Q Consensus 128 ~~~~g~~~~~~~~~I~v~Tp~~l~~~l~----~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~-~~~~i~~SA 202 (391)
+--.|-.+++.... ........-+++||||+-++.. ..+..++...+. +.++|++.=
T Consensus 1037 --------------i~A~TI~s~L~~~~~~~~~~~~~~~~~~llIVDEaSMv~~----~~m~~Ll~~~~~~garvVLVGD 1098 (1747)
T PRK13709 1037 --------------VDAQTLASFLHDTQLQQRSGETPDFSNTLFLLDESSMVGN----TDMARAYALIAAGGGRAVSSGD 1098 (1747)
T ss_pred --------------cchhhHHHHhcccccccccccCCCCCCcEEEEEccccccH----HHHHHHHHhhhcCCCEEEEecc
Confidence 00113333322110 1111122458999999987743 345556665553 577877654
Q ss_pred c
Q psy6275 203 T 203 (391)
Q Consensus 203 T 203 (391)
+
T Consensus 1099 ~ 1099 (1747)
T PRK13709 1099 T 1099 (1747)
T ss_pred h
Confidence 4
|
|
| >PRK10919 ATP-dependent DNA helicase Rep; Provisional | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0045 Score=64.35 Aligned_cols=67 Identities=21% Similarity=0.220 Sum_probs=54.6
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc----CCeEEEEcccHHHHHHHHHHHHHhcc
Q psy6275 57 VLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ----SQRVIYTTPIKALSNQKYREFEEQFK 125 (391)
Q Consensus 57 ~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~----~~~vlvl~P~~~L~~q~~~~~~~~~~ 125 (391)
.+++-|.+|+.. ...+++|.|++|||||.+...-+...+.. +.++|+++.|+..+.++.+++....+
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 378999999875 45678999999999999877666666642 35899999999999999999987653
|
|
| >PRK12901 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0013 Score=69.13 Aligned_cols=120 Identities=16% Similarity=0.152 Sum_probs=75.3
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc----ccee
Q psy6275 54 YPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK----DVGL 129 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~----~v~~ 129 (391)
+|..++++|.-.--.+..|+ +.-+.||=|||+++.+|+.-..-.|.-|-|+....-||..=++++...+. .+++
T Consensus 166 W~m~~yDVQliGgivLh~G~--IAEM~TGEGKTLvAtlp~yLnAL~GkgVHvVTVNDYLA~RDaewmgply~fLGLsvg~ 243 (1112)
T PRK12901 166 WDMVHYDVQLIGGVVLHQGK--IAEMATGEGKTLVATLPVYLNALTGNGVHVVTVNDYLAKRDSEWMGPLYEFHGLSVDC 243 (1112)
T ss_pred CCCcccchHHhhhhhhcCCc--eeeecCCCCchhHHHHHHHHHHHcCCCcEEEEechhhhhccHHHHHHHHHHhCCceee
Confidence 44557777776655566665 88999999999999887654434555566666667776554555544444 5555
Q ss_pred eeC-Cccc-----CCCCCEEEEcHHHH-HHHHhcC------ccccCccceEEEeccccc
Q psy6275 130 ITG-DVTI-----NPSSSCLIMTTEIL-RNMLYRG------SEITREVGWVIFDEIHYM 175 (391)
Q Consensus 130 ~~g-~~~~-----~~~~~I~v~Tp~~l-~~~l~~~------~~~l~~~~~lViDE~h~~ 175 (391)
... +... .-.++|+++|..-+ +++|..+ ....+.+.+.|+||+|.+
T Consensus 244 i~~~~~~~~~rr~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSI 302 (1112)
T PRK12901 244 IDKHQPNSEARRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSV 302 (1112)
T ss_pred cCCCCCCHHHHHHhCCCcceecCCCccccccchhccccchHhhhCcCCceeEeechhhh
Confidence 433 2121 12579999997432 2333221 123457889999999975
|
|
| >PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.00048 Score=58.48 Aligned_cols=116 Identities=17% Similarity=0.180 Sum_probs=54.3
Q ss_pred EEEecCCcchHHHHHHHHHHHHhcC-CeEEEEcccHHHHHHHHHHHHHhcccceeeeCCc--------ccCCCCCEEEEc
Q psy6275 76 LVSAHTSAGKTVVAEYAIASSLKQS-QRVIYTTPIKALSNQKYREFEEQFKDVGLITGDV--------TINPSSSCLIMT 146 (391)
Q Consensus 76 li~apTGsGKT~~~~~~~~~~l~~~-~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~--------~~~~~~~I~v~T 146 (391)
++.|+-|.|||.+.=+.+...+..+ .+++|.+|+.+-+..+++.+...+...+.-.... .......|-+..
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~ 80 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKRIGQIIKLRFNKQRIEFVA 80 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----EEEE-SS--S-HHHHHCC--------------------------CCC--B--
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcCceEEEecCCHHHHHHHHHHHHhhccccccccccccccccccccccccceEEEEC
Confidence 5789999999988655554444333 5899999999988888776655544322211000 011245677777
Q ss_pred HHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEcccCCC
Q psy6275 147 TEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPN 206 (391)
Q Consensus 147 p~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 206 (391)
|+.+... -...|++|||||=.+. -+.+..+ +. ....++||.|...
T Consensus 81 Pd~l~~~-------~~~~DlliVDEAAaIp----~p~L~~l---l~-~~~~vv~stTi~G 125 (177)
T PF05127_consen 81 PDELLAE-------KPQADLLIVDEAAAIP----LPLLKQL---LR-RFPRVVFSTTIHG 125 (177)
T ss_dssp HHHHCCT-----------SCEEECTGGGS-----HHHHHHH---HC-CSSEEEEEEEBSS
T ss_pred CHHHHhC-------cCCCCEEEEechhcCC----HHHHHHH---Hh-hCCEEEEEeeccc
Confidence 8765321 1245899999997653 2233333 33 3446677888764
|
This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B. |
| >PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0063 Score=54.31 Aligned_cols=128 Identities=16% Similarity=0.124 Sum_probs=69.3
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhc-CCeEEEEcccHHHHHHHHHHHHHhccc---------ceeeeCCcccCCCC
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQ-SQRVIYTTPIKALSNQKYREFEEQFKD---------VGLITGDVTINPSS 140 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~-~~~vlvl~P~~~L~~q~~~~~~~~~~~---------v~~~~g~~~~~~~~ 140 (391)
.|..+++.||+|+|||...+..+.+.+.+ +-+++|+.- .+-..++.+.+..+..+ +.++..........
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~-ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~~~ 96 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSF-EEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIGWS 96 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEES-SS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST-T
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEe-cCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccccccc
Confidence 35679999999999999888878788777 888888863 44446666666655431 22222221111101
Q ss_pred CEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccch----hHHHHHHHhCCCCcEEEEccc
Q psy6275 141 SCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGY----VWEETLILLSDNVRFVFLSAT 203 (391)
Q Consensus 141 ~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~----~~~~i~~~~~~~~~~i~~SAT 203 (391)
-..++.+...+....... ..+.+|+|-...+....... .+..+...+...-.+.++++.
T Consensus 97 ---~~~~~~l~~~i~~~i~~~-~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~~~t~llt~~ 159 (226)
T PF06745_consen 97 ---PNDLEELLSKIREAIEEL-KPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSRGVTTLLTSE 159 (226)
T ss_dssp ---SCCHHHHHHHHHHHHHHH-TSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred ---ccCHHHHHHHHHHHHHhc-CCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHCCCEEEEEEc
Confidence 233444444443322212 33899999998872222222 233344444443445555555
|
More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C .... |
| >PRK14087 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0065 Score=59.96 Aligned_cols=104 Identities=12% Similarity=0.232 Sum_probs=57.8
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHH---hcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSL---KQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEI 149 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l---~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~ 149 (391)
+.+++.|++|+|||... .++.+.+ ..+.+++|+.+ .++..++...+.... +.
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~~~~~~v~yv~~-~~f~~~~~~~l~~~~-----------------------~~ 196 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESNFSDLKVSYMSG-DEFARKAVDILQKTH-----------------------KE 196 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHhCCCCeEEEEEH-HHHHHHHHHHHHHhh-----------------------hH
Confidence 35899999999999764 3444433 23567777644 666666655543210 11
Q ss_pred HHHHHhcCccccCccceEEEecccccCcc-ccchhHHHHHHHh-CCCCcEEEEcccCC
Q psy6275 150 LRNMLYRGSEITREVGWVIFDEIHYMRDK-ERGYVWEETLILL-SDNVRFVFLSATIP 205 (391)
Q Consensus 150 l~~~l~~~~~~l~~~~~lViDE~h~~~~~-~~~~~~~~i~~~~-~~~~~~i~~SAT~~ 205 (391)
+..+. ..+.+.+++|+||+|.+... .....+..++..+ ..+.|+|+.|-..|
T Consensus 197 ~~~~~----~~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P 250 (450)
T PRK14087 197 IEQFK----NEICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSP 250 (450)
T ss_pred HHHHH----HHhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCH
Confidence 11111 12347889999999987532 1112233333333 34456666555544
|
|
| >PRK04195 replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0082 Score=60.02 Aligned_cols=33 Identities=21% Similarity=0.215 Sum_probs=22.1
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEc
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTT 107 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~ 107 (391)
.+.+++.||+|+|||..+...+-.. +..++.+.
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el---~~~~ieln 71 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY---GWEVIELN 71 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc---CCCEEEEc
Confidence 4679999999999998764443322 34444443
|
|
| >PF13173 AAA_14: AAA domain | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0099 Score=47.91 Aligned_cols=35 Identities=17% Similarity=0.386 Sum_probs=23.8
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEE
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYT 106 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl 106 (391)
+++.+++.||.|+|||+.....+-... ...+++++
T Consensus 1 n~~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi 35 (128)
T PF13173_consen 1 NRKIIILTGPRGVGKTTLLKQLAKDLL-PPENILYI 35 (128)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhc-ccccceee
Confidence 356789999999999987654443332 34455555
|
|
| >PRK14086 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0077 Score=60.87 Aligned_cols=103 Identities=20% Similarity=0.307 Sum_probs=57.7
Q ss_pred cEEEEecCCcchHHHHHHHHHHHHh--cCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASSLK--QSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILR 151 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~l~--~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l~ 151 (391)
.++++|++|+|||............ .+.+++|+ +..+++++....+... ..+.+.
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yi-taeef~~el~~al~~~----------------------~~~~f~ 372 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYV-SSEEFTNEFINSIRDG----------------------KGDSFR 372 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEe-eHHHHHHHHHHHHHhc----------------------cHHHHH
Confidence 4899999999999875433333322 35677776 4466666554433220 112222
Q ss_pred HHHhcCccccCccceEEEecccccCccc-cchhHHHHHHHh-CCCCcEEEEcccCCC
Q psy6275 152 NMLYRGSEITREVGWVIFDEIHYMRDKE-RGYVWEETLILL-SDNVRFVFLSATIPN 206 (391)
Q Consensus 152 ~~l~~~~~~l~~~~~lViDE~h~~~~~~-~~~~~~~i~~~~-~~~~~~i~~SAT~~~ 206 (391)
. .+.++++|+|||+|.+.... ....+-.++..+ ..+.++|+.|-..+.
T Consensus 373 ~-------~y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~ 422 (617)
T PRK14086 373 R-------RYREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPK 422 (617)
T ss_pred H-------HhhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChH
Confidence 1 24478999999999885432 112222344433 335667765554443
|
|
| >PHA03333 putative ATPase subunit of terminase; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.025 Score=57.40 Aligned_cols=154 Identities=13% Similarity=0.154 Sum_probs=87.1
Q ss_pred CcHHHHHHHHHH---hcCCcEEEEecCCcchHHHHHHHHHHHHh-cCCeEEEEcccHHHHHHHHHHHHHhcccceee--e
Q psy6275 58 LDPFQKEAILCI---ENNQSVLVSAHTSAGKTVVAEYAIASSLK-QSQRVIYTTPIKALSNQKYREFEEQFKDVGLI--T 131 (391)
Q Consensus 58 ~~~~Q~~~i~~i---~~~~~~li~apTGsGKT~~~~~~~~~~l~-~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~--~ 131 (391)
|.|.=.+-|..+ .+.+-.++.+|-|.|||.+..+.+...+. .+.+|+|++|...-+.++++.+...+...+.. .
T Consensus 170 ~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f~Gi~IlvTAH~~~ts~evF~rv~~~le~lg~~~~f 249 (752)
T PHA03333 170 PSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISFLEIDIVVQAQRKTMCLTLYNRVETVVHAYQHKPWF 249 (752)
T ss_pred CChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHhcCCeEEEECCChhhHHHHHHHHHHHHHHhcccccc
Confidence 566555555554 45667889999999999986544443333 57899999999999999888877776522200 0
Q ss_pred CCc---c-c-CCCCCEEEEcHHHHH------HHHh--cCccccCccceEEEecccccCccccchhHHHHHHHhC-CCCcE
Q psy6275 132 GDV---T-I-NPSSSCLIMTTEILR------NMLY--RGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLS-DNVRF 197 (391)
Q Consensus 132 g~~---~-~-~~~~~I~v~Tp~~l~------~~l~--~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~-~~~~~ 197 (391)
++. . . .....|.+..|.... .+.. .+...-..++++|+|||..+.+ ..+..++-.+. .+.++
T Consensus 250 p~~~~iv~vkgg~E~I~f~~p~gak~G~sti~F~Ars~~s~RG~~~DLLIVDEAAfI~~----~~l~aIlP~l~~~~~k~ 325 (752)
T PHA03333 250 PEEFKIVTLKGTDENLEYISDPAAKEGKTTAHFLASSPNAARGQNPDLVIVDEAAFVNP----GALLSVLPLMAVKGTKQ 325 (752)
T ss_pred CCCceEEEeeCCeeEEEEecCcccccCcceeEEecccCCCcCCCCCCEEEEECcccCCH----HHHHHHHHHHccCCCce
Confidence 000 0 0 011123332221110 0000 1111113679999999998864 34555554443 45667
Q ss_pred EEEcccCCChHHHHHHhcc
Q psy6275 198 VFLSATIPNASQFAQWVSH 216 (391)
Q Consensus 198 i~~SAT~~~~~~~~~~l~~ 216 (391)
+++|.+-. ...+..++..
T Consensus 326 IiISS~~~-~~s~tS~L~n 343 (752)
T PHA03333 326 IHISSPVD-ADSWISRVGE 343 (752)
T ss_pred EEEeCCCC-cchHHHHhhh
Confidence 77777642 3334444444
|
|
| >PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0073 Score=51.89 Aligned_cols=41 Identities=20% Similarity=0.177 Sum_probs=35.8
Q ss_pred hcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccH
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIK 110 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~ 110 (391)
....++.+..++|.|||.+++-.+++.+..+.+|+++.=.+
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlK 60 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIK 60 (191)
T ss_pred ccCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEec
Confidence 35678999999999999999999999999999999996544
|
|
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.011 Score=47.32 Aligned_cols=31 Identities=19% Similarity=0.150 Sum_probs=20.2
Q ss_pred EEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcc
Q psy6275 75 VLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTP 108 (391)
Q Consensus 75 ~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P 108 (391)
+++.||+|+|||..+-..+-.. +..++.+..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l---~~~~~~i~~ 31 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL---GFPFIEIDG 31 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT---TSEEEEEET
T ss_pred CEEECcCCCCeeHHHHHHHhhc---ccccccccc
Confidence 5899999999998754444332 344444443
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >PRK00411 cdc6 cell division control protein 6; Reviewed | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.012 Score=57.13 Aligned_cols=34 Identities=18% Similarity=0.212 Sum_probs=23.0
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHhc--CCeEEEE
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLKQ--SQRVIYT 106 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~~--~~~vlvl 106 (391)
.+++++||+|+|||...-..+-+.-.. +..++++
T Consensus 56 ~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~i 91 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYI 91 (394)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 679999999999999865444332222 3455665
|
|
| >cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0075 Score=50.38 Aligned_cols=134 Identities=16% Similarity=0.085 Sum_probs=70.4
Q ss_pred cEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHH-HHHHHHhcccceeeeCCcccC-CCCCEEEEcHHH--
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQK-YREFEEQFKDVGLITGDVTIN-PSSSCLIMTTEI-- 149 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~-~~~~~~~~~~v~~~~g~~~~~-~~~~I~v~Tp~~-- 149 (391)
-+.+..++|.|||.+++-..++....+.+|+++.=.+.-...- ...++++ +.+.....+.... ...+ .++.
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~----~~~~~~ 78 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTEN----DEEDIA 78 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCC----hHHHHH
Confidence 3677888999999999988899989999999964333210000 1122222 2333333222110 0000 1111
Q ss_pred ----HHHHHhcCccccCccceEEEecccccCccccc--hhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHH
Q psy6275 150 ----LRNMLYRGSEITREVGWVIFDEIHYMRDKERG--YVWEETLILLSDNVRFVFLSATIPNA-SQFAQW 213 (391)
Q Consensus 150 ----l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~--~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~ 213 (391)
.+..... ......++++|+||+-...+.+.- ..+..++...+...-+|+.+-.+|.. .+.++.
T Consensus 79 ~a~~~~~~a~~-~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD~ 148 (159)
T cd00561 79 AAAEGWAFAKE-AIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAADL 148 (159)
T ss_pred HHHHHHHHHHH-HHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCce
Confidence 1111111 122357999999999876444322 12334555555555666655555544 444443
|
This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin. |
| >KOG1015|consensus | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0089 Score=61.86 Aligned_cols=132 Identities=14% Similarity=0.216 Sum_probs=79.0
Q ss_pred CCcEEEEecCCcchHHHH---HHHHHHHHhcC-CeEEEEcccHHHHHHHHHHHHHhccc------ceeee-CCcc-----
Q psy6275 72 NQSVLVSAHTSAGKTVVA---EYAIASSLKQS-QRVIYTTPIKALSNQKYREFEEQFKD------VGLIT-GDVT----- 135 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~---~~~~~~~l~~~-~~vlvl~P~~~L~~q~~~~~~~~~~~------v~~~~-g~~~----- 135 (391)
|--+|+.=-.|-|||+.. +..++.....+ .++||++|...+ ..|+..|.++... +.+.. +...
T Consensus 696 GsGcILAHcMGLGKTlQVvtflhTvL~c~klg~ktaLvV~PlNt~-~NW~~EFekWm~~~e~~~~leV~eL~~vkr~e~R 774 (1567)
T KOG1015|consen 696 GSGCILAHCMGLGKTLQVVTFLHTVLLCDKLGFKTALVVCPLNTA-LNWMNEFEKWMEGLEDDEKLEVSELATVKRPEER 774 (1567)
T ss_pred CcchHHHHhhcccceehhhHHHHHHHHhhccCCceEEEEcchHHH-HHHHHHHHHhcccccccccceeehhhhccChHHH
Confidence 344667777899999854 44444443333 589999996655 5677888888762 11110 1111
Q ss_pred ------cCCCCCEEEEcHHHHHHHHhcCc-------------cccCccceEEEecccccCccccchhHHHHHHHhCCCCc
Q psy6275 136 ------INPSSSCLIMTTEILRNMLYRGS-------------EITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVR 196 (391)
Q Consensus 136 ------~~~~~~I~v~Tp~~l~~~l~~~~-------------~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~ 196 (391)
......|.|.-++.+..+..... ..-...++||+||+|.+-.. ...+...+..+.. .+
T Consensus 775 ~~~L~~W~~~ggVmIiGYdmyRnLa~gr~vk~rk~ke~f~k~lvdpGPD~vVCDE~HiLKNe--ksa~Skam~~irt-kR 851 (1567)
T KOG1015|consen 775 SYMLQRWQEDGGVMIIGYDMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNE--KSAVSKAMNSIRT-KR 851 (1567)
T ss_pred HHHHHHHHhcCCEEEEehHHHHHHhcccchhhhHHHHHHHHhccCCCCCeEEecchhhhccc--hHHHHHHHHHHHh-he
Confidence 11234688888887665543211 01135689999999988654 4445555555554 44
Q ss_pred EEEEcccCCCh
Q psy6275 197 FVFLSATIPNA 207 (391)
Q Consensus 197 ~i~~SAT~~~~ 207 (391)
.|++|+|+-..
T Consensus 852 RI~LTGTPLQN 862 (1567)
T KOG1015|consen 852 RIILTGTPLQN 862 (1567)
T ss_pred eEEeecCchhh
Confidence 56778887543
|
|
| >PHA03368 DNA packaging terminase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.021 Score=57.76 Aligned_cols=122 Identities=18% Similarity=0.330 Sum_probs=78.1
Q ss_pred CCcEEEEecCCcchHHHHHHHHHH-HH--hcCCeEEEEcccHHHHHHHHHHHHHhcc------cceeeeCCccc-----C
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIAS-SL--KQSQRVIYTTPIKALSNQKYREFEEQFK------DVGLITGDVTI-----N 137 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~-~l--~~~~~vlvl~P~~~L~~q~~~~~~~~~~------~v~~~~g~~~~-----~ 137 (391)
.+-.++..|--.|||+... +++. .+ ..+.+++|++|.+..++.+++++...+. .+....|+ .+ +
T Consensus 254 qk~tVflVPRR~GKTwivv-~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkGe-~I~i~f~n 331 (738)
T PHA03368 254 QRATVFLVPRRHGKTWFLV-PLIALALATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKGE-TISFSFPD 331 (738)
T ss_pred ccceEEEecccCCchhhHH-HHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecCc-EEEEEecC
Confidence 3567899999999999765 3333 33 3589999999999999999999888654 12223332 22 1
Q ss_pred CC-CCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHh-CCCCcEEEEcccCC
Q psy6275 138 PS-SSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILL-SDNVRFVFLSATIP 205 (391)
Q Consensus 138 ~~-~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~-~~~~~~i~~SAT~~ 205 (391)
.. ..|.+++- ...+...=..++++|+|||+.+.+. .+..++-.+ ..++++|.+|.|-.
T Consensus 332 G~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~~----al~~ilp~l~~~n~k~I~ISS~Ns 391 (738)
T PHA03368 332 GSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRPD----AVQTIMGFLNQTNCKIIFVSSTNT 391 (738)
T ss_pred CCccEEEEEec------cCCCCccCCcccEEEEechhhCCHH----HHHHHHHHHhccCccEEEEecCCC
Confidence 11 23444322 1111122237999999999998653 444444332 35789999998853
|
|
| >COG3421 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.006 Score=60.18 Aligned_cols=137 Identities=18% Similarity=0.217 Sum_probs=79.8
Q ss_pred EEecCCcchHHHHHHHHHHHHhcCC-eEEEEcccHHHHHHHHHHHHHhcc-----cceeeeCCc-----------ccCCC
Q psy6275 77 VSAHTSAGKTVVAEYAIASSLKQSQ-RVIYTTPIKALSNQKYREFEEQFK-----DVGLITGDV-----------TINPS 139 (391)
Q Consensus 77 i~apTGsGKT~~~~~~~~~~l~~~~-~vlvl~P~~~L~~q~~~~~~~~~~-----~v~~~~g~~-----------~~~~~ 139 (391)
..+.||||||++....+++....|. ..|+.|......+.+...+....+ .-.+..++. .-+..
T Consensus 2 f~matgsgkt~~ma~lil~~y~kgyr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fsehnd~ 81 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKGYRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFSEHNDA 81 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhchhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccCccCCc
Confidence 3578999999998888888887765 477777766666655554443322 001111111 12234
Q ss_pred CCEEEEcHHHHHHHHhcCcc------ccCccc-eEEEecccccCccccc---------hhHHHHHH-Hh-C-CCCcEEEE
Q psy6275 140 SSCLIMTTEILRNMLYRGSE------ITREVG-WVIFDEIHYMRDKERG---------YVWEETLI-LL-S-DNVRFVFL 200 (391)
Q Consensus 140 ~~I~v~Tp~~l~~~l~~~~~------~l~~~~-~lViDE~h~~~~~~~~---------~~~~~i~~-~~-~-~~~~~i~~ 200 (391)
-.|.++|.+.|...+.+... .+.+.. +++-||+|++-...-+ ..|+..+. .+ + ++--++.+
T Consensus 82 iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~nkd~~~lef 161 (812)
T COG3421 82 IEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQNKDNLLLEF 161 (812)
T ss_pred eEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhcCCCceeehh
Confidence 56899999988877654321 233444 4567999998322111 11332222 12 2 34446668
Q ss_pred cccCCChHHHHHH
Q psy6275 201 SATIPNASQFAQW 213 (391)
Q Consensus 201 SAT~~~~~~~~~~ 213 (391)
|||++...++...
T Consensus 162 ~at~~k~k~v~~k 174 (812)
T COG3421 162 SATIPKEKSVEDK 174 (812)
T ss_pred hhcCCccccHHHH
Confidence 9999866666554
|
|
| >TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0071 Score=55.41 Aligned_cols=36 Identities=22% Similarity=0.274 Sum_probs=26.2
Q ss_pred CCcHHHHHHHHHHh----cC-CcEEEEecCCcchHHHHHHH
Q psy6275 57 VLDPFQKEAILCIE----NN-QSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 57 ~~~~~Q~~~i~~i~----~~-~~~li~apTGsGKT~~~~~~ 92 (391)
-+++.+.+++..+. .+ ..++++||+|+|||+.....
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l 63 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNL 63 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHH
Confidence 46677777777552 33 36889999999999876544
|
Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems. |
| >TIGR03499 FlhF flagellar biosynthetic protein FlhF | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.012 Score=54.43 Aligned_cols=84 Identities=17% Similarity=0.210 Sum_probs=46.9
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhc-C-CeEEEEc--ccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQ-S-QRVIYTT--PIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTT 147 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~-~-~~vlvl~--P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp 147 (391)
++.++++||||+|||++....+...... + .+|.++. |.+.-+.+....+.+..+ +. -..+.++
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~-~p------------~~~~~~~ 260 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILG-VP------------VKVARDP 260 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhC-Cc------------eeccCCH
Confidence 3468899999999999875544444333 3 5665553 333333333333333321 10 0112355
Q ss_pred HHHHHHHhcCccccCccceEEEecc
Q psy6275 148 EILRNMLYRGSEITREVGWVIFDEI 172 (391)
Q Consensus 148 ~~l~~~l~~~~~~l~~~~~lViDE~ 172 (391)
..+...+.. +.+.++|++|.+
T Consensus 261 ~~l~~~l~~----~~~~d~vliDt~ 281 (282)
T TIGR03499 261 KELRKALDR----LRDKDLILIDTA 281 (282)
T ss_pred HHHHHHHHH----ccCCCEEEEeCC
Confidence 556555543 346899999975
|
|
| >PRK14088 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.025 Score=55.79 Aligned_cols=76 Identities=16% Similarity=0.294 Sum_probs=44.7
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHhc--CCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLKQ--SQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEIL 150 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~~--~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l 150 (391)
..+++.||+|+|||............. +.+++|+.. ..+..+....+..- +.+.+
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~-~~f~~~~~~~~~~~----------------------~~~~f 187 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS-EKFLNDLVDSMKEG----------------------KLNEF 187 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH-HHHHHHHHHHHhcc----------------------cHHHH
Confidence 368999999999998754443333332 457777754 44444444333210 11222
Q ss_pred HHHHhcCccccCccceEEEecccccCc
Q psy6275 151 RNMLYRGSEITREVGWVIFDEIHYMRD 177 (391)
Q Consensus 151 ~~~l~~~~~~l~~~~~lViDE~h~~~~ 177 (391)
...+. ...+++++||+|.+.+
T Consensus 188 ~~~~~------~~~dvLlIDDi~~l~~ 208 (440)
T PRK14088 188 REKYR------KKVDVLLIDDVQFLIG 208 (440)
T ss_pred HHHHH------hcCCEEEEechhhhcC
Confidence 22221 2578999999998754
|
|
| >COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0075 Score=51.52 Aligned_cols=93 Identities=15% Similarity=0.115 Sum_probs=58.6
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILR 151 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l~ 151 (391)
++-.+++||.+||||.-.+.-+.+....+.++++..|...--.+. +.+..-.| . ...-++|-.+..+.
T Consensus 4 g~l~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD~R~~~--------~~V~Sr~G---~-~~~A~~i~~~~~i~ 71 (201)
T COG1435 4 GWLEFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAIDTRYGV--------GKVSSRIG---L-SSEAVVIPSDTDIF 71 (201)
T ss_pred EEEEEEEccCcCcchHHHHHHHHHHHHcCCeEEEEeccccccccc--------ceeeeccC---C-cccceecCChHHHH
Confidence 455789999999999987777777767788999998843321110 01111111 1 12345666666666
Q ss_pred HHHhcCccccCccceEEEecccccCc
Q psy6275 152 NMLYRGSEITREVGWVIFDEIHYMRD 177 (391)
Q Consensus 152 ~~l~~~~~~l~~~~~lViDE~h~~~~ 177 (391)
..+....... .++.+.+|||+.+.+
T Consensus 72 ~~i~~~~~~~-~~~~v~IDEaQF~~~ 96 (201)
T COG1435 72 DEIAALHEKP-PVDCVLIDEAQFFDE 96 (201)
T ss_pred HHHHhcccCC-CcCEEEEehhHhCCH
Confidence 6665443322 389999999997643
|
|
| >TIGR01075 uvrD DNA helicase II | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.011 Score=62.11 Aligned_cols=66 Identities=23% Similarity=0.201 Sum_probs=54.8
Q ss_pred CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc----CCeEEEEcccHHHHHHHHHHHHHhcc
Q psy6275 58 LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ----SQRVIYTTPIKALSNQKYREFEEQFK 125 (391)
Q Consensus 58 ~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~----~~~vlvl~P~~~L~~q~~~~~~~~~~ 125 (391)
+++-|.+++.. ...+++|.|+.|||||.+...=+...+.. +.++|+++.|+..+.++.+++.+..+
T Consensus 5 Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 5 LNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred cCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 89999999864 45689999999999999876666665542 45899999999999999999988764
|
Designed to identify uvrD members of the uvrD/rep subfamily. |
| >PRK11773 uvrD DNA-dependent helicase II; Provisional | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.011 Score=62.23 Aligned_cols=66 Identities=23% Similarity=0.206 Sum_probs=54.6
Q ss_pred CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh----cCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy6275 58 LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK----QSQRVIYTTPIKALSNQKYREFEEQFK 125 (391)
Q Consensus 58 ~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~----~~~~vlvl~P~~~L~~q~~~~~~~~~~ 125 (391)
+++-|.+|+.. ...+++|.|+.|||||.+...=+...+. .+.++|+++-|+..+.++.+++.+..+
T Consensus 10 Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~ 79 (721)
T PRK11773 10 LNDKQREAVAA--PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLLG 79 (721)
T ss_pred cCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHhc
Confidence 89999999864 4568999999999999987665555554 246899999999999999999988764
|
|
| >COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0092 Score=56.43 Aligned_cols=95 Identities=17% Similarity=0.176 Sum_probs=54.0
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILRN 152 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l~~ 152 (391)
.+.|++||+|+|||..+.+..-.. +....-+..+.+-+.++...+.+.- .
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~~---~~~f~~~sAv~~gvkdlr~i~e~a~---------------------------~ 98 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGTT---NAAFEALSAVTSGVKDLREIIEEAR---------------------------K 98 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHhh---CCceEEeccccccHHHHHHHHHHHH---------------------------H
Confidence 478999999999999865544322 4445555444444443333322210 0
Q ss_pred HHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEcccCCCh
Q psy6275 153 MLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNA 207 (391)
Q Consensus 153 ~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~ 207 (391)
... ...=.++++||+|++... ..+.++..+. +-.+++..||-.|+
T Consensus 99 ~~~-----~gr~tiLflDEIHRfnK~----QQD~lLp~vE-~G~iilIGATTENP 143 (436)
T COG2256 99 NRL-----LGRRTILFLDEIHRFNKA----QQDALLPHVE-NGTIILIGATTENP 143 (436)
T ss_pred HHh-----cCCceEEEEehhhhcChh----hhhhhhhhhc-CCeEEEEeccCCCC
Confidence 010 123358999999987432 3334444444 45677888886655
|
|
| >PRK12724 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.06 Score=52.08 Aligned_cols=115 Identities=14% Similarity=0.159 Sum_probs=62.6
Q ss_pred CcEEEEecCCcchHHHHHHHHHHH-HhcCCeEEEEc--ccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASS-LKQSQRVIYTT--PIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEI 149 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~-l~~~~~vlvl~--P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~ 149 (391)
.-++++||+|+|||+.....+... ...+.++.++. +.|..+.++...+.+..+ +.. +.+..+..
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lg-vp~------------~~~~~~~~ 290 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMG-MPF------------YPVKDIKK 290 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcC-CCe------------eehHHHHH
Confidence 347899999999999876555443 45566666654 445555554444433321 100 11111333
Q ss_pred HHHHHhcCccccCccceEEEecccccCccccchhHHHH---HHHhC---CCCcEEEEcccCCCh
Q psy6275 150 LRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEET---LILLS---DNVRFVFLSATIPNA 207 (391)
Q Consensus 150 l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i---~~~~~---~~~~~i~~SAT~~~~ 207 (391)
+...+. -...++|+||=+-..... ...++.+ +.... +.-.++.+|||....
T Consensus 291 l~~~l~-----~~~~D~VLIDTaGr~~rd--~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~ 347 (432)
T PRK12724 291 FKETLA-----RDGSELILIDTAGYSHRN--LEQLERMQSFYSCFGEKDSVENLLVLSSTSSYH 347 (432)
T ss_pred HHHHHH-----hCCCCEEEEeCCCCCccC--HHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHH
Confidence 333332 147899999987764321 2333333 33321 224577889998653
|
|
| >TIGR01074 rep ATP-dependent DNA helicase Rep | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.013 Score=61.21 Aligned_cols=66 Identities=23% Similarity=0.247 Sum_probs=54.4
Q ss_pred CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc----CCeEEEEcccHHHHHHHHHHHHHhcc
Q psy6275 58 LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ----SQRVIYTTPIKALSNQKYREFEEQFK 125 (391)
Q Consensus 58 ~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~----~~~vlvl~P~~~L~~q~~~~~~~~~~ 125 (391)
+++-|.+++.. ...+++|.|+.|||||.+...-+...+.. +.++++++.|+..+.++..++.+..+
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 68899998864 45689999999999999887766666642 36899999999999999999987653
|
Designed to identify rep members of the uvrD/rep subfamily. |
| >TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.019 Score=66.33 Aligned_cols=124 Identities=21% Similarity=0.165 Sum_probs=76.2
Q ss_pred CCCCcHHHHHHHHHHhcC--CcEEEEecCCcchHHHHH---HHHHHHHh-cCCeEEEEcccHHHHHHHHHHHHHhcccce
Q psy6275 55 PFVLDPFQKEAILCIENN--QSVLVSAHTSAGKTVVAE---YAIASSLK-QSQRVIYTTPIKALSNQKYREFEEQFKDVG 128 (391)
Q Consensus 55 ~~~~~~~Q~~~i~~i~~~--~~~li~apTGsGKT~~~~---~~~~~~l~-~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~ 128 (391)
.+.+++.|.+|+..+..+ +-+++.|+.|+|||+... -++..... .+.+++.++||..-+.++.+ ..-.
T Consensus 1017 ~~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~~Aa~~L~~----~g~~-- 1090 (1960)
T TIGR02760 1017 LERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEAVGELKS----AGVQ-- 1090 (1960)
T ss_pred cCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHHh----cCCc--
Confidence 456999999999987653 567889999999998762 33444333 47789999999888776632 1100
Q ss_pred eeeCCcccCCCCCEEEEcHHHHHHHH--hcCccccCccceEEEecccccCccccchhHHHHHHHh-CCCCcEEEEccc
Q psy6275 129 LITGDVTINPSSSCLIMTTEILRNML--YRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILL-SDNVRFVFLSAT 203 (391)
Q Consensus 129 ~~~g~~~~~~~~~I~v~Tp~~l~~~l--~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~-~~~~~~i~~SAT 203 (391)
-.|-..++.-. ......+...+++|+||+-++.. ..+..++... ..+.++|++.=+
T Consensus 1091 ---------------a~Ti~s~l~~~~~~~~~~~~~~~~v~ivDEasMv~~----~~~~~l~~~~~~~~ak~vlvGD~ 1149 (1960)
T TIGR02760 1091 ---------------AQTLDSFLTDISLYRNSGGDFRNTLFILDESSMVSN----FQLTHATELVQKSGSRAVSLGDI 1149 (1960)
T ss_pred ---------------hHhHHHHhcCcccccccCCCCcccEEEEEccccccH----HHHHHHHHhccCCCCEEEEeCCh
Confidence 01222222100 01111234678999999987643 3455555543 345677766433
|
This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein. |
| >COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.013 Score=60.21 Aligned_cols=132 Identities=19% Similarity=0.207 Sum_probs=79.7
Q ss_pred CCcHHHHHHHHH---Hhc--CCcEEEEecCCcchHHHHHHHHHHHHhc--CCeEEEEcccHHHHHHHHHHHHHhccccee
Q psy6275 57 VLDPFQKEAILC---IEN--NQSVLVSAHTSAGKTVVAEYAIASSLKQ--SQRVIYTTPIKALSNQKYREFEEQFKDVGL 129 (391)
Q Consensus 57 ~~~~~Q~~~i~~---i~~--~~~~li~apTGsGKT~~~~~~~~~~l~~--~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~ 129 (391)
..|.-|.+++.. +.+ .+-+++.|.-|-|||.+.=+++...... ..+++|.+|+.+-+..++.-..+-+...++
T Consensus 211 ~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~~~~iiVTAP~~~nv~~Lf~fa~~~l~~lg~ 290 (758)
T COG1444 211 CLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAGSVRIIVTAPTPANVQTLFEFAGKGLEFLGY 290 (758)
T ss_pred hcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHHhHHHhCC
Confidence 356666666554 333 3368999999999998764443222222 459999999999888887766665543322
Q ss_pred ee-------CCcccC--CCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEE
Q psy6275 130 IT-------GDVTIN--PSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFL 200 (391)
Q Consensus 130 ~~-------g~~~~~--~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~ 200 (391)
-. |..... ....|-+..|.... ..-+++|+|||=.+. -+.+..++.. -+.++|
T Consensus 291 ~~~v~~d~~g~~~~~~~~~~~i~y~~P~~a~----------~~~DllvVDEAAaIp----lplL~~l~~~----~~rv~~ 352 (758)
T COG1444 291 KRKVAPDALGEIREVSGDGFRIEYVPPDDAQ----------EEADLLVVDEAAAIP----LPLLHKLLRR----FPRVLF 352 (758)
T ss_pred ccccccccccceeeecCCceeEEeeCcchhc----------ccCCEEEEehhhcCC----hHHHHHHHhh----cCceEE
Confidence 11 111111 11234555554321 127899999997653 3344444433 357899
Q ss_pred cccCCC
Q psy6275 201 SATIPN 206 (391)
Q Consensus 201 SAT~~~ 206 (391)
|.|+..
T Consensus 353 sTTIhG 358 (758)
T COG1444 353 STTIHG 358 (758)
T ss_pred Eeeecc
Confidence 999864
|
|
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.014 Score=52.18 Aligned_cols=53 Identities=13% Similarity=0.249 Sum_probs=38.1
Q ss_pred hcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHh
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQ 123 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~ 123 (391)
..+..+++.|++|+|||+.....+...+.++.+++++.. .+-..+..+.+..+
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~-e~~~~~~~~~~~~~ 74 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVST-QLTTTEFIKQMMSL 74 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeC-CCCHHHHHHHHHHh
Confidence 457789999999999999876666666677888988874 33334555555443
|
|
| >PTZ00112 origin recognition complex 1 protein; Provisional | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.025 Score=59.05 Aligned_cols=19 Identities=26% Similarity=0.342 Sum_probs=15.2
Q ss_pred EEEEecCCcchHHHHHHHH
Q psy6275 75 VLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 75 ~li~apTGsGKT~~~~~~~ 93 (391)
++|.|+||+|||.+.-..+
T Consensus 784 LYIyG~PGTGKTATVK~VL 802 (1164)
T PTZ00112 784 LYISGMPGTGKTATVYSVI 802 (1164)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3599999999999865443
|
|
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.039 Score=54.06 Aligned_cols=120 Identities=15% Similarity=0.145 Sum_probs=60.5
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcc--cHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHH-
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTP--IKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEI- 149 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P--~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~- 149 (391)
..++++|++|+|||++....+......+.+++++.. .|.-+.++...+....+ +.+. +... . ..|..
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~g-vp~~-~~~~---~-----~d~~~i 165 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIG-VPFY-GDPD---N-----KDAVEI 165 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcC-CcEE-ecCC---c-----cCHHHH
Confidence 458899999999999876555444455667776653 24433333333333221 1111 1000 0 11222
Q ss_pred HHHHHhcCccccCccceEEEecccccCcc-ccchhHHHHHHHhCCCCcEEEEcccCCC
Q psy6275 150 LRNMLYRGSEITREVGWVIFDEIHYMRDK-ERGYVWEETLILLSDNVRFVFLSATIPN 206 (391)
Q Consensus 150 l~~~l~~~~~~l~~~~~lViDE~h~~~~~-~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 206 (391)
+.+.+.. +...++||+|.+-+.... ..-..+..+.....+..-++.++|+...
T Consensus 166 ~~~al~~----~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq 219 (437)
T PRK00771 166 AKEGLEK----FKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ 219 (437)
T ss_pred HHHHHHH----hhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH
Confidence 2233322 223489999999654321 1111123333344455667777887754
|
|
| >TIGR00416 sms DNA repair protein RadA | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.039 Score=54.52 Aligned_cols=87 Identities=11% Similarity=0.057 Sum_probs=55.5
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEE---EcHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLI---MTTE 148 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v---~Tp~ 148 (391)
|.-+++.|++|+|||+..+..+......+.+++|+... +-..|+..+..++.-.. . ++.+ .+.+
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~E-Es~~qi~~ra~rlg~~~----~--------~l~~~~e~~~~ 160 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGE-ESLQQIKMRAIRLGLPE----P--------NLYVLSETNWE 160 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECc-CCHHHHHHHHHHcCCCh----H--------HeEEcCCCCHH
Confidence 46789999999999998776666665667789998754 44566655555432110 0 1111 1335
Q ss_pred HHHHHHhcCccccCccceEEEecccccC
Q psy6275 149 ILRNMLYRGSEITREVGWVIFDEIHYMR 176 (391)
Q Consensus 149 ~l~~~l~~~~~~l~~~~~lViDE~h~~~ 176 (391)
.+...+.+ .+.+++|||.+..+.
T Consensus 161 ~I~~~i~~-----~~~~~vVIDSIq~l~ 183 (454)
T TIGR00416 161 QICANIEE-----ENPQACVIDSIQTLY 183 (454)
T ss_pred HHHHHHHh-----cCCcEEEEecchhhc
Confidence 55554432 257899999998764
|
The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)). |
| >PRK05973 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.031 Score=50.05 Aligned_cols=56 Identities=14% Similarity=0.151 Sum_probs=41.3
Q ss_pred HHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhc
Q psy6275 68 CIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQF 124 (391)
Q Consensus 68 ~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~ 124 (391)
-+..|.-++|.|++|+|||...+..+.+...++.+++|+.- .+-..|+.+++....
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSl-Ees~~~i~~R~~s~g 115 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTL-EYTEQDVRDRLRALG 115 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEE-eCCHHHHHHHHHHcC
Confidence 34567789999999999999887777777777888888853 333566666666553
|
|
| >PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.079 Score=48.47 Aligned_cols=118 Identities=14% Similarity=0.081 Sum_probs=65.8
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcc--cH-HHHHHHHHHHHHhcccceeeeCCcccCCCCCEEE-Ec
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTP--IK-ALSNQKYREFEEQFKDVGLITGDVTINPSSSCLI-MT 146 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P--~~-~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v-~T 146 (391)
.+..+.+.|++|+|||..+...+......+.++.++.. .+ ..+.|+...... . ...+.. .+
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~----~-----------~~~~~~~~~ 138 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKT----I-----------GFEVIAVRD 138 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhh----c-----------CceEEecCC
Confidence 44688999999999999876554444444566666543 22 444444322221 1 122222 35
Q ss_pred HHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHH---HhCCCCcEEEEcccCCC
Q psy6275 147 TEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLI---LLSDNVRFVFLSATIPN 206 (391)
Q Consensus 147 p~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~---~~~~~~~~i~~SAT~~~ 206 (391)
++.+...+..-. ....++++++|.+-+.... ...++.+.. ...+...++.+|||...
T Consensus 139 ~~~l~~~l~~l~-~~~~~D~ViIDt~Gr~~~~--~~~l~el~~~~~~~~~~~~~LVl~a~~~~ 198 (270)
T PRK06731 139 EAAMTRALTYFK-EEARVDYILIDTAGKNYRA--SETVEEMIETMGQVEPDYICLTLSASMKS 198 (270)
T ss_pred HHHHHHHHHHHH-hcCCCCEEEEECCCCCcCC--HHHHHHHHHHHhhhCCCeEEEEEcCccCH
Confidence 665555443211 1236899999999875322 333443433 33333446679999743
|
|
| >PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0088 Score=52.56 Aligned_cols=21 Identities=24% Similarity=0.284 Sum_probs=16.3
Q ss_pred CcEEEEecCCcchHHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~ 93 (391)
.+++++||+|.|||..+.+.+
T Consensus 51 ~h~lf~GPPG~GKTTLA~IIA 71 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARIIA 71 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHHH
T ss_pred ceEEEECCCccchhHHHHHHH
Confidence 369999999999998754443
|
Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B. |
| >PHA02544 44 clamp loader, small subunit; Provisional | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.024 Score=53.31 Aligned_cols=39 Identities=15% Similarity=0.145 Sum_probs=23.4
Q ss_pred ccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEc
Q psy6275 163 EVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLS 201 (391)
Q Consensus 163 ~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 201 (391)
..+++|+||+|.+........+..++...+.+.++|+.|
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEc
Confidence 568999999998733222233444455555556665544
|
|
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.046 Score=54.35 Aligned_cols=125 Identities=18% Similarity=0.168 Sum_probs=63.0
Q ss_pred hcCCcEEEEecCCcchHHHHHHHHHHHHhc--CCeEEEEc--ccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEE-E
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEYAIASSLKQ--SQRVIYTT--PIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCL-I 144 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~~~~~~l~~--~~~vlvl~--P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~-v 144 (391)
..++.+.++||||+|||+.....+...... +.++.++. +.+..+.++...+.... ++ .+. +
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iL---gv-----------~v~~a 413 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQL---GI-----------AVHEA 413 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhccc---Cc-----------eeEec
Confidence 356788999999999999875444333222 34555543 23433333222222211 11 111 1
Q ss_pred EcHHHHHHHHhcCccccCccceEEEecccccCcc-ccchhHHHHHHHhCCCCcEEEEcccCCChHHHHHHh
Q psy6275 145 MTTEILRNMLYRGSEITREVGWVIFDEIHYMRDK-ERGYVWEETLILLSDNVRFVFLSATIPNASQFAQWV 214 (391)
Q Consensus 145 ~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~-~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~l 214 (391)
.+++.+...+.. +.+.++|+||.+-..... .....+..+.. ......+++++++.. ..++.+.+
T Consensus 414 ~d~~~L~~aL~~----l~~~DLVLIDTaG~s~~D~~l~eeL~~L~a-a~~~a~lLVLpAtss-~~Dl~eii 478 (559)
T PRK12727 414 DSAESLLDLLER----LRDYKLVLIDTAGMGQRDRALAAQLNWLRA-ARQVTSLLVLPANAH-FSDLDEVV 478 (559)
T ss_pred CcHHHHHHHHHH----hccCCEEEecCCCcchhhHHHHHHHHHHHH-hhcCCcEEEEECCCC-hhHHHHHH
Confidence 234455555543 347899999999865221 11111222222 223456778888863 33343433
|
|
| >PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase) | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.012 Score=58.77 Aligned_cols=66 Identities=15% Similarity=0.228 Sum_probs=49.5
Q ss_pred HHHHHHHHHHh-----cC----CcEEEEecCCcchHHHHHHHHHHHH----hcCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy6275 60 PFQKEAILCIE-----NN----QSVLVSAHTSAGKTVVAEYAIASSL----KQSQRVIYTTPIKALSNQKYREFEEQFK 125 (391)
Q Consensus 60 ~~Q~~~i~~i~-----~~----~~~li~apTGsGKT~~~~~~~~~~l----~~~~~vlvl~P~~~L~~q~~~~~~~~~~ 125 (391)
|+|+-.+..+. .+ +.+++.-|-|.|||.......+..+ ..+..+++.+++++-+..+++.+.....
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~ 79 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIE 79 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHH
Confidence 67887776653 12 3478888999999987644433333 2367899999999999999999888876
|
The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. |
| >COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0091 Score=57.18 Aligned_cols=104 Identities=17% Similarity=0.180 Sum_probs=51.7
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHhc--CCeEEEEcc-cHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLKQ--SQRVIYTTP-IKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEI 149 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~~--~~~vlvl~P-~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~ 149 (391)
.|+++.|+||+|||.+.-..+-+.... +.-++++-- ...-..|++..+-..++.+ +..-. ....
T Consensus 43 ~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~------------p~~g~-~~~~ 109 (366)
T COG1474 43 SNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKV------------PLTGD-SSLE 109 (366)
T ss_pred ccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCC------------CCCCC-chHH
Confidence 579999999999999866555444322 222444421 1112223333332222100 00011 1122
Q ss_pred HHHHHhcCccccCccceEEEecccccCccccchhHHHHHHH
Q psy6275 150 LRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLIL 190 (391)
Q Consensus 150 l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~ 190 (391)
++..+++........-++|+||+|.+.+... ..+..+.+.
T Consensus 110 ~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~-~~LY~L~r~ 149 (366)
T COG1474 110 ILKRLYDNLSKKGKTVIVILDEVDALVDKDG-EVLYSLLRA 149 (366)
T ss_pred HHHHHHHHHHhcCCeEEEEEcchhhhccccc-hHHHHHHhh
Confidence 3333333222234566999999999976533 444444443
|
|
| >PLN03025 replication factor C subunit; Provisional | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.026 Score=53.24 Aligned_cols=24 Identities=17% Similarity=0.149 Sum_probs=18.6
Q ss_pred CcEEEEecCCcchHHHHHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASS 96 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~ 96 (391)
.+++++||+|+|||..+...+...
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999998765554443
|
|
| >KOG1133|consensus | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.0055 Score=61.38 Aligned_cols=44 Identities=18% Similarity=0.280 Sum_probs=37.6
Q ss_pred CCCCCcHHHHHHHHHH----hcCCcEEEEecCCcchHHHHHHHHHHHH
Q psy6275 54 YPFVLDPFQKEAILCI----ENNQSVLVSAHTSAGKTVVAEYAIASSL 97 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i----~~~~~~li~apTGsGKT~~~~~~~~~~l 97 (391)
++|+|+++|.+.+..+ .+|+-.|+.+|||+|||+..+-+.+.|+
T Consensus 12 fPy~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL 59 (821)
T KOG1133|consen 12 FPYTPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWL 59 (821)
T ss_pred CCCCchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHH
Confidence 4678999999988754 6789999999999999998877777777
|
|
| >cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.0068 Score=48.51 Aligned_cols=72 Identities=24% Similarity=0.292 Sum_probs=50.4
Q ss_pred HHHHHHHHc--CCCcEEEEEcchhhHHHHHHHhhccCC--------CChHHHHHHHHHHHHH-hhhcchhhccCcchHhH
Q psy6275 297 KIVKMIMER--NLAPVIVFSFSKKDCEIYAMQMAKLNF--------NETEEVKLVDDVFSNA-MDVLSEEDRKLPQIENI 365 (391)
Q Consensus 297 ~l~~~l~~~--~~~~~iIF~~t~~~~~~la~~L~~~g~--------~~~~~r~~~~~~~~~~-~~~l~~~d~~~~~~~~~ 365 (391)
.+...+... ..+++||||+++..++.+++.|.+.+. ....++..+.+.|++. ...++++
T Consensus 16 ~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t---------- 85 (131)
T cd00079 16 ALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVAT---------- 85 (131)
T ss_pred HHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEc----------
Confidence 344444433 357999999999999999999986422 2346677777777773 3444444
Q ss_pred HHHHHhhhhhccCC
Q psy6275 366 LPLLRRGIGIHHGV 379 (391)
Q Consensus 366 ~~~l~~GI~~~h~~ 379 (391)
..+..|+|+..+.
T Consensus 86 -~~~~~G~d~~~~~ 98 (131)
T cd00079 86 -DVIARGIDLPNVS 98 (131)
T ss_pred -ChhhcCcChhhCC
Confidence 5899999997654
|
|
| >KOG0991|consensus | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.0048 Score=54.00 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=19.4
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSL 97 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l 97 (391)
-|++++||+|+|||++....+...+
T Consensus 49 P~liisGpPG~GKTTsi~~LAr~LL 73 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSILCLARELL 73 (333)
T ss_pred CceEeeCCCCCchhhHHHHHHHHHh
Confidence 4799999999999998665554443
|
|
| >PRK13833 conjugal transfer protein TrbB; Provisional | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.0093 Score=55.92 Aligned_cols=55 Identities=20% Similarity=0.354 Sum_probs=40.3
Q ss_pred CcHHHHHHHHH-HhcCCcEEEEecCCcchHHHHHHHHHHHH---hcCCeEEEEcccHHHH
Q psy6275 58 LDPFQKEAILC-IENNQSVLVSAHTSAGKTVVAEYAIASSL---KQSQRVIYTTPIKALS 113 (391)
Q Consensus 58 ~~~~Q~~~i~~-i~~~~~~li~apTGsGKT~~~~~~~~~~l---~~~~~vlvl~P~~~L~ 113 (391)
+++.|.+.+.. +..+.|++++|+||||||+.. .+++..+ ..+.+++.+-.+.||.
T Consensus 129 ~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll-~aL~~~i~~~~~~~rivtiEd~~El~ 187 (323)
T PRK13833 129 MTEAQASVIRSAIDSRLNIVISGGTGSGKTTLA-NAVIAEIVASAPEDRLVILEDTAEIQ 187 (323)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHHhcCCCCceEEEecCCcccc
Confidence 67778877765 456789999999999999864 4455554 2456788877777763
|
|
| >COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.015 Score=62.42 Aligned_cols=144 Identities=24% Similarity=0.245 Sum_probs=93.1
Q ss_pred CCcHHHHHHHHHHh-----cCCcEEEEecCCcchHHHHHHHHHHHH---hc-CCeEEEEcccHHHHHHHHHHHHHhcc--
Q psy6275 57 VLDPFQKEAILCIE-----NNQSVLVSAHTSAGKTVVAEYAIASSL---KQ-SQRVIYTTPIKALSNQKYREFEEQFK-- 125 (391)
Q Consensus 57 ~~~~~Q~~~i~~i~-----~~~~~li~apTGsGKT~~~~~~~~~~l---~~-~~~vlvl~P~~~L~~q~~~~~~~~~~-- 125 (391)
++.++|.+.+..+. .+.+.+++...|.|||...+..+.... .. .+..++++|+ +++.++...+.++..
T Consensus 338 ~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~-s~~~nw~~e~~k~~~~~ 416 (866)
T COG0553 338 ELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPA-SLLSNWKREFEKFAPDL 416 (866)
T ss_pred hhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecH-HHHHHHHHHHhhhCccc
Confidence 48899999987644 366788999999999987655554322 22 3578999995 556677778877766
Q ss_pred c-ceeeeCCccc--------C--CC------CCEEEEcHHHHHHHHh-cCccccCccceEEEecccccCccccchhHHHH
Q psy6275 126 D-VGLITGDVTI--------N--PS------SSCLIMTTEILRNMLY-RGSEITREVGWVIFDEIHYMRDKERGYVWEET 187 (391)
Q Consensus 126 ~-v~~~~g~~~~--------~--~~------~~I~v~Tp~~l~~~l~-~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i 187 (391)
. +...+|.... . .. .+++++|++.+..... .....-..++.+|+||+|.+... .+.....+
T Consensus 417 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~-~s~~~~~l 495 (866)
T COG0553 417 RLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKND-QSSEGKAL 495 (866)
T ss_pred cceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhh-hhHHHHHH
Confidence 3 4456665531 0 01 6899999998877321 11112237889999999997543 23333333
Q ss_pred HHHhCCCCcEEEEcccC
Q psy6275 188 LILLSDNVRFVFLSATI 204 (391)
Q Consensus 188 ~~~~~~~~~~i~~SAT~ 204 (391)
. .+.... .+.+|+||
T Consensus 496 ~-~~~~~~-~~~LtgTP 510 (866)
T COG0553 496 Q-FLKALN-RLDLTGTP 510 (866)
T ss_pred H-HHhhcc-eeeCCCCh
Confidence 3 343323 37888887
|
|
| >TIGR01073 pcrA ATP-dependent DNA helicase PcrA | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.024 Score=59.71 Aligned_cols=66 Identities=23% Similarity=0.274 Sum_probs=54.6
Q ss_pred CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc----CCeEEEEcccHHHHHHHHHHHHHhcc
Q psy6275 58 LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ----SQRVIYTTPIKALSNQKYREFEEQFK 125 (391)
Q Consensus 58 ~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~----~~~vlvl~P~~~L~~q~~~~~~~~~~ 125 (391)
+++-|.+|+.. ...+++|.|+.|||||.+...=+...+.. +.++|+++-|+..+.++..++.+..+
T Consensus 5 Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 5 LNPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred cCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 89999999975 45689999999999999877666666543 35899999999999999999987753
|
Designed to identify pcrA members of the uvrD/rep subfamily. |
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.054 Score=49.75 Aligned_cols=122 Identities=15% Similarity=0.199 Sum_probs=65.6
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEc--ccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHH-
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTT--PIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEI- 149 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~--P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~- 149 (391)
+-++++||+|+|||++..-.+......+.+++++. +.|.-+.+....+.+..+ +.++..... . .|..
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~-i~~~~~~~~----~-----dp~~~ 142 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLG-VDVIKQKEG----A-----DPAAV 142 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCC-eEEEeCCCC----C-----CHHHH
Confidence 45778899999999987555544445667787775 345544444444444432 332222211 1 1222
Q ss_pred HHHHHhcCccccCccceEEEecccccCcc-ccchhHHHHHHHhC------CCCcEEEEcccCCC
Q psy6275 150 LRNMLYRGSEITREVGWVIFDEIHYMRDK-ERGYVWEETLILLS------DNVRFVFLSATIPN 206 (391)
Q Consensus 150 l~~~l~~~~~~l~~~~~lViDE~h~~~~~-~~~~~~~~i~~~~~------~~~~~i~~SAT~~~ 206 (391)
....+... ..+.++++++|=+-..... ..-..+..+..... ..-.++.++||...
T Consensus 143 ~~~~l~~~--~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~ 204 (272)
T TIGR00064 143 AFDAIQKA--KARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ 204 (272)
T ss_pred HHHHHHHH--HHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH
Confidence 12222111 1347899999999875321 11112333333333 44567888998643
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.033 Score=57.88 Aligned_cols=115 Identities=16% Similarity=0.137 Sum_probs=63.5
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHH-HhcC-CeEEEEcc--cHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASS-LKQS-QRVIYTTP--IKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTT 147 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~-l~~~-~~vlvl~P--~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp 147 (391)
++-+.++||||+|||++....+... ...+ .++.++.- .|.-+.++...+.+..+ + +-.++.+|
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~g-v------------pv~~~~~~ 251 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILG-V------------PVHAVKDA 251 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCC-C------------CccccCCH
Confidence 3457899999999999875444333 3344 35555542 23223333334443331 1 11223467
Q ss_pred HHHHHHHhcCccccCccceEEEecccccCccccchhHHHHH---HHhCCCCcEEEEcccCC
Q psy6275 148 EILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETL---ILLSDNVRFVFLSATIP 205 (391)
Q Consensus 148 ~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~---~~~~~~~~~i~~SAT~~ 205 (391)
+.+...+.. +.+.++|+||=+-+.... ....+.+. ....+...++.+|||..
T Consensus 252 ~~l~~al~~----~~~~D~VLIDTAGRs~~d--~~l~eel~~l~~~~~p~e~~LVLsAt~~ 306 (767)
T PRK14723 252 ADLRFALAA----LGDKHLVLIDTVGMSQRD--RNVSEQIAMLCGVGRPVRRLLLLNAASH 306 (767)
T ss_pred HHHHHHHHH----hcCCCEEEEeCCCCCccC--HHHHHHHHHHhccCCCCeEEEEECCCCc
Confidence 777666653 446799999999875322 12222222 22234456778899973
|
|
| >COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.0068 Score=56.32 Aligned_cols=60 Identities=20% Similarity=0.168 Sum_probs=45.4
Q ss_pred CCC-CcHHHHHHHHHHhcC-CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHH
Q psy6275 55 PFV-LDPFQKEAILCIENN-QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQ 115 (391)
Q Consensus 55 ~~~-~~~~Q~~~i~~i~~~-~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q 115 (391)
.|. +++-|.+.+..+... .|++++|.||||||+. +-++...+...-|++.+--|.||-.+
T Consensus 154 ~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl-LNal~~~i~~~eRvItiEDtaELql~ 215 (355)
T COG4962 154 IFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL-LNALSGFIDSDERVITIEDTAELQLA 215 (355)
T ss_pred HcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH-HHHHHhcCCCcccEEEEeehhhhccC
Confidence 444 888899888876555 4999999999999986 44455555566699999888777443
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.036 Score=57.26 Aligned_cols=133 Identities=15% Similarity=0.118 Sum_probs=73.6
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccC----CCCCEEEEc
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTIN----PSSSCLIMT 146 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~----~~~~I~v~T 146 (391)
..+-++++||-|+|||+....... ....+..|.++.-- +--++.+.-++.+...++-.+.+...+ .+.+.-+.-
T Consensus 36 ~~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wlsld-e~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l 113 (894)
T COG2909 36 DYRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLSLD-ESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSL 113 (894)
T ss_pred CceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEeecC-CccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccH
Confidence 456799999999999987655554 44556667776422 112222222222222111111110000 011111222
Q ss_pred HHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEcccCCC
Q psy6275 147 TEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPN 206 (391)
Q Consensus 147 p~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 206 (391)
-..+..++..-. ...+.=++|+|+.|.+.+......++.+++..|.+..+++.|=+-|.
T Consensus 114 ~~l~~~L~~Ela-~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~ 172 (894)
T COG2909 114 ESLLSSLLNELA-SYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQ 172 (894)
T ss_pred HHHHHHHHHHHH-hhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCC
Confidence 222223332111 11123489999999998887778888999999999999998877553
|
|
| >TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.042 Score=49.04 Aligned_cols=50 Identities=22% Similarity=0.253 Sum_probs=34.7
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFE 121 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~ 121 (391)
.|..+++.|++|+|||..+...+.+.+.++..++++.- .+...++....+
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~-e~~~~~i~~~~~ 68 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT-EESRESIIRQAA 68 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc-cCCHHHHHHHHH
Confidence 46789999999999998776666666666778888764 333344444433
|
Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain. |
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.02 Score=52.62 Aligned_cols=129 Identities=20% Similarity=0.214 Sum_probs=66.3
Q ss_pred CcHHHHHHHHHHh---------cCCcEEEEecCCcchHHHHHHHHHHHHhc-------CCeEEEEcccHHHHHHHHHHHH
Q psy6275 58 LDPFQKEAILCIE---------NNQSVLVSAHTSAGKTVVAEYAIASSLKQ-------SQRVIYTTPIKALSNQKYREFE 121 (391)
Q Consensus 58 ~~~~Q~~~i~~i~---------~~~~~li~apTGsGKT~~~~~~~~~~l~~-------~~~vlvl~P~~~L~~q~~~~~~ 121 (391)
-++.-.+++..+. .-.+++++|+||.|||.+.--..-.+... -+.+++-+|...-....+..+-
T Consensus 38 gY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL 117 (302)
T PF05621_consen 38 GYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAIL 117 (302)
T ss_pred cCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHH
Confidence 3355555665441 12589999999999999764433332211 1345555677766666666655
Q ss_pred HhcccceeeeCCcccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchh--HHHHHHHhCC--CCcE
Q psy6275 122 EQFKDVGLITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYV--WEETLILLSD--NVRF 197 (391)
Q Consensus 122 ~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~--~~~i~~~~~~--~~~~ 197 (391)
..++- +......+--. -.....++.. -.++++||||+|.++....... +-..++.+.+ ...+
T Consensus 118 ~~lga--------P~~~~~~~~~~-~~~~~~llr~-----~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipi 183 (302)
T PF05621_consen 118 EALGA--------PYRPRDRVAKL-EQQVLRLLRR-----LGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPI 183 (302)
T ss_pred HHhCc--------ccCCCCCHHHH-HHHHHHHHHH-----cCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCe
Confidence 54421 11111111100 1112233322 2688999999999866432221 2233444443 3445
Q ss_pred EEE
Q psy6275 198 VFL 200 (391)
Q Consensus 198 i~~ 200 (391)
|++
T Consensus 184 V~v 186 (302)
T PF05621_consen 184 VGV 186 (302)
T ss_pred EEe
Confidence 554
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >cd00984 DnaB_C DnaB helicase C terminal domain | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.047 Score=49.12 Aligned_cols=47 Identities=19% Similarity=0.261 Sum_probs=34.9
Q ss_pred hcCCcEEEEecCCcchHHHHHHHHHHHHhc-CCeEEEEcc---cHHHHHHH
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEYAIASSLKQ-SQRVIYTTP---IKALSNQK 116 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~~~~~~l~~-~~~vlvl~P---~~~L~~q~ 116 (391)
..|.-+++.|+||+|||...+..+.+...+ +.+++|+.. ..++...+
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~r~ 61 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQRL 61 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHHHH
Confidence 456788999999999998877767776666 888888863 34444443
|
The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. |
| >TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.017 Score=53.76 Aligned_cols=93 Identities=22% Similarity=0.307 Sum_probs=56.9
Q ss_pred CcHHHHHHHHH-HhcCCcEEEEecCCcchHHHHHHHHHHHHhc---CCeEEEEcccHHHHHHHHHHHHHhcc-cceeeeC
Q psy6275 58 LDPFQKEAILC-IENNQSVLVSAHTSAGKTVVAEYAIASSLKQ---SQRVIYTTPIKALSNQKYREFEEQFK-DVGLITG 132 (391)
Q Consensus 58 ~~~~Q~~~i~~-i~~~~~~li~apTGsGKT~~~~~~~~~~l~~---~~~vlvl~P~~~L~~q~~~~~~~~~~-~v~~~~g 132 (391)
+++-|.+.+.. +..+++++++|+||||||+.. .+++..+.. +.+++++-...|+... .. .+.+..+
T Consensus 117 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~al~~~i~~~~~~~ri~tiEd~~El~~~--------~~~~v~~~~~ 187 (299)
T TIGR02782 117 MTAAQRDVLREAVLARKNILVVGGTGSGKTTLA-NALLAEIAKNDPTDRVVIIEDTRELQCA--------APNVVQLRTS 187 (299)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHhhccCCCceEEEECCchhhcCC--------CCCEEEEEec
Confidence 55556666654 456789999999999999874 444455533 5788888777777321 11 1222211
Q ss_pred CcccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEeccc
Q psy6275 133 DVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIH 173 (391)
Q Consensus 133 ~~~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h 173 (391)
. +. .|...++....+ .+.+.+|+.|+-
T Consensus 188 ~-----~~----~~~~~~l~~aLR-----~~pD~iivGEiR 214 (299)
T TIGR02782 188 D-----DA----ISMTRLLKATLR-----LRPDRIIVGEVR 214 (299)
T ss_pred C-----CC----CCHHHHHHHHhc-----CCCCEEEEeccC
Confidence 1 11 155555443321 267899999995
|
The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA. |
| >PRK13894 conjugal transfer ATPase TrbB; Provisional | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.011 Score=55.40 Aligned_cols=54 Identities=26% Similarity=0.445 Sum_probs=39.6
Q ss_pred CcHHHHHHHHH-HhcCCcEEEEecCCcchHHHHHHHHHHHH---hcCCeEEEEcccHHH
Q psy6275 58 LDPFQKEAILC-IENNQSVLVSAHTSAGKTVVAEYAIASSL---KQSQRVIYTTPIKAL 112 (391)
Q Consensus 58 ~~~~Q~~~i~~-i~~~~~~li~apTGsGKT~~~~~~~~~~l---~~~~~vlvl~P~~~L 112 (391)
+++.|.+.+.. +..+++++++|+||||||... .+++..+ ....+++++-.+.|+
T Consensus 133 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~aL~~~~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 133 MTAAQREAIIAAVRAHRNILVIGGTGSGKTTLV-NAIINEMVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHhhhhcCCCceEEEEcCCCcc
Confidence 66778888774 567889999999999999654 4444432 345688888777776
|
|
| >PTZ00293 thymidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.048 Score=47.73 Aligned_cols=85 Identities=7% Similarity=-0.026 Sum_probs=51.5
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHh-cccceeeeCCcccCCCCCEEEEcHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQ-FKDVGLITGDVTINPSSSCLIMTTEIL 150 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~-~~~v~~~~g~~~~~~~~~I~v~Tp~~l 150 (391)
|+--++.||.+||||.-.+-.+.+....+.+++++-|...-- . .......+.+.. . .-+.+.....+
T Consensus 4 G~i~vi~GpMfSGKTteLLr~i~~y~~ag~kv~~~kp~~DtR---------~~~~~~I~Sh~g~~--~-~a~~v~~~~e~ 71 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRLVKRFTYSEKKCVVIKYSKDTR---------YSDEQNISSHDKQM--L-KAIKVSKLKEV 71 (211)
T ss_pred eEEEEEECCCCChHHHHHHHHHHHHHHcCCceEEEEeccccc---------CCCCCcEEecCCCc--c-eeEEcCCHHHH
Confidence 555689999999999877777766667788999998854321 1 101111111111 1 12444443333
Q ss_pred HHHHhcCccccCccceEEEeccccc
Q psy6275 151 RNMLYRGSEITREVGWVIFDEIHYM 175 (391)
Q Consensus 151 ~~~l~~~~~~l~~~~~lViDE~h~~ 175 (391)
...+ .++++|+|||+|.+
T Consensus 72 ~~~~-------~~~dvI~IDEaQFf 89 (211)
T PTZ00293 72 LETA-------KNYDVIAIDEGQFF 89 (211)
T ss_pred HHhc-------cCCCEEEEEchHhh
Confidence 3222 47899999999986
|
|
| >KOG1131|consensus | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.072 Score=51.99 Aligned_cols=70 Identities=19% Similarity=0.283 Sum_probs=45.0
Q ss_pred CCCC-CcHHHHHHHHHH----hcCCcEEEEecCCcchHHHHHHHHHHHH----hcCCeEEEEcccHHHHHHHHHHHHHh
Q psy6275 54 YPFV-LDPFQKEAILCI----ENNQSVLVSAHTSAGKTVVAEYAIASSL----KQSQRVIYTTPIKALSNQKYREFEEQ 123 (391)
Q Consensus 54 ~~~~-~~~~Q~~~i~~i----~~~~~~li~apTGsGKT~~~~~~~~~~l----~~~~~vlvl~P~~~L~~q~~~~~~~~ 123 (391)
++|. .+|-|.+-...+ ..+.+.++.+|+|+|||.+.+..++... ....+++|..-|..-++....+++.+
T Consensus 12 FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRTvpEieK~l~El~~l 90 (755)
T KOG1131|consen 12 FPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRTVPEIEKALEELKRL 90 (755)
T ss_pred cCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCcchHHHHHHHHHHHH
Confidence 3454 778887766543 4577899999999999988755544432 12457777766655444444444443
|
|
| >COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.014 Score=57.05 Aligned_cols=43 Identities=35% Similarity=0.512 Sum_probs=31.4
Q ss_pred CcHHHHHHHHHHhcC--CcEEEEecCCcchHHHHHHHHHHHHhcCC
Q psy6275 58 LDPFQKEAILCIENN--QSVLVSAHTSAGKTVVAEYAIASSLKQSQ 101 (391)
Q Consensus 58 ~~~~Q~~~i~~i~~~--~~~li~apTGsGKT~~~~~~~~~~l~~~~ 101 (391)
+.+.|.+.+..+.+. .-+++.||||||||++ ++.++..+..+.
T Consensus 242 ~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~~~ 286 (500)
T COG2804 242 MSPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNTPE 286 (500)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcCCC
Confidence 577888888776543 4588999999999987 566666665443
|
|
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.14 Score=49.85 Aligned_cols=129 Identities=7% Similarity=0.010 Sum_probs=64.5
Q ss_pred cEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEc--ccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTT--PIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILR 151 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~--P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l~ 151 (391)
-++++|++|+|||++..-.+......+.+++++. |.|.-+.++.+.+.+..+ +.+..... . ..|..+.
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~-vp~~~~~~----~-----~dp~~i~ 171 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKAR-IPFYGSYT----E-----SDPVKIA 171 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccC-CeEEeecC----C-----CCHHHHH
Confidence 4789999999999876544433334566777765 446555544444443321 11111000 0 0121211
Q ss_pred -HHHhcCccccCccceEEEecccccCcc-ccchhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHHh
Q psy6275 152 -NMLYRGSEITREVGWVIFDEIHYMRDK-ERGYVWEETLILLSDNVRFVFLSATIPNA-SQFAQWV 214 (391)
Q Consensus 152 -~~l~~~~~~l~~~~~lViDE~h~~~~~-~~~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l 214 (391)
+.+.... -..+++||+|=+.++... ..-..+..+.....+...++.++|+.... ...++-+
T Consensus 172 ~~~l~~~~--~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F 235 (429)
T TIGR01425 172 SEGVEKFK--KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAF 235 (429)
T ss_pred HHHHHHHH--hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHH
Confidence 1111110 136899999999765321 11112223333344455577788887644 3344433
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >TIGR00708 cobA cob(I)alamin adenosyltransferase | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.026 Score=47.76 Aligned_cols=35 Identities=20% Similarity=0.137 Sum_probs=30.6
Q ss_pred cEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcc
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTP 108 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P 108 (391)
-+.+..++|.|||.+++-.+++....+.+|+++.=
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQF 41 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQF 41 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEE
Confidence 47788899999999999889999999999988843
|
Alternate name: corrinoid adenosyltransferase. |
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.13 Score=48.37 Aligned_cols=123 Identities=15% Similarity=0.166 Sum_probs=63.2
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEc--ccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHH-
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTT--PIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTE- 148 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~--P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~- 148 (391)
++-+.++||+|+|||+.....+......+.+|+++. +.+..+.+....+.... .+.++...... .|.
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~-~i~~~~~~~~~---------dpa~ 183 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERV-GVPVIAQKEGA---------DPAS 183 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHc-CceEEEeCCCC---------CHHH
Confidence 446789999999999886544444335567777774 33444433333443333 23332221111 121
Q ss_pred HHHHHHhcCccccCccceEEEecccccCcc-ccchhHHHHHHHh------CCCCcEEEEcccCCC
Q psy6275 149 ILRNMLYRGSEITREVGWVIFDEIHYMRDK-ERGYVWEETLILL------SDNVRFVFLSATIPN 206 (391)
Q Consensus 149 ~l~~~l~~~~~~l~~~~~lViDE~h~~~~~-~~~~~~~~i~~~~------~~~~~~i~~SAT~~~ 206 (391)
.....+... ..++++++|+|=+-.+... ..-..+..+.... .+.-.++.++||...
T Consensus 184 ~v~~~l~~~--~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~ 246 (318)
T PRK10416 184 VAFDAIQAA--KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ 246 (318)
T ss_pred HHHHHHHHH--HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh
Confidence 111211111 1247899999999876422 1112233333221 133457888999644
|
|
| >TIGR02928 orc1/cdc6 family replication initiation protein | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.094 Score=50.33 Aligned_cols=21 Identities=33% Similarity=0.640 Sum_probs=17.1
Q ss_pred CcEEEEecCCcchHHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~ 93 (391)
.+++++||+|+|||.+....+
T Consensus 41 ~~i~I~G~~GtGKT~l~~~~~ 61 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVTKYVM 61 (365)
T ss_pred CcEEEECCCCCCHHHHHHHHH
Confidence 579999999999998764443
|
Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other. |
| >PRK13851 type IV secretion system protein VirB11; Provisional | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.011 Score=55.96 Aligned_cols=45 Identities=22% Similarity=0.398 Sum_probs=35.2
Q ss_pred HHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHH
Q psy6275 68 CIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALS 113 (391)
Q Consensus 68 ~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~ 113 (391)
++..++|++++||||||||+. +.+++..+..+.+++.+-.+.||.
T Consensus 158 ~v~~~~nilI~G~tGSGKTTl-l~aLl~~i~~~~rivtiEd~~El~ 202 (344)
T PRK13851 158 CVVGRLTMLLCGPTGSGKTTM-SKTLISAIPPQERLITIEDTLELV 202 (344)
T ss_pred HHHcCCeEEEECCCCccHHHH-HHHHHcccCCCCCEEEECCCcccc
Confidence 346789999999999999976 455566666677888888877774
|
|
| >PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.034 Score=57.98 Aligned_cols=40 Identities=20% Similarity=0.268 Sum_probs=25.1
Q ss_pred ccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEcccCCCh
Q psy6275 163 EVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNA 207 (391)
Q Consensus 163 ~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~ 207 (391)
...++|+||+|.+... ..+.++..+. +.++++.++|-++.
T Consensus 109 ~~~IL~IDEIh~Ln~~----qQdaLL~~lE-~g~IiLI~aTTenp 148 (725)
T PRK13341 109 KRTILFIDEVHRFNKA----QQDALLPWVE-NGTITLIGATTENP 148 (725)
T ss_pred CceEEEEeChhhCCHH----HHHHHHHHhc-CceEEEEEecCCCh
Confidence 4679999999987432 2334444443 35677777775554
|
|
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.066 Score=47.99 Aligned_cols=53 Identities=21% Similarity=0.283 Sum_probs=38.6
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhc
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQF 124 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~ 124 (391)
.|..+++.|++|+|||......+...+.++.+++|+.-.. -..++.+.+..+.
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~-~~~~~~~~~~~~g 76 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTEN-TSKSYLKQMESVK 76 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCC-CHHHHHHHHHHCC
Confidence 3567899999999999988777777777788888886543 3355555555543
|
|
| >KOG2028|consensus | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.016 Score=54.07 Aligned_cols=99 Identities=23% Similarity=0.280 Sum_probs=56.5
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILRN 152 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l~~ 152 (391)
...+++||+|+|||..+-+.+...-....+.+=+.-|.+-+.++..-+.+.- ..
T Consensus 163 pSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~dvR~ife~aq------------------------~~-- 216 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTNDVRDIFEQAQ------------------------NE-- 216 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchHHHHHHHHHHH------------------------HH--
Confidence 3689999999999998755554443334556666666666555544443321 11
Q ss_pred HHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEcccCCCh
Q psy6275 153 MLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNA 207 (391)
Q Consensus 153 ~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~ 207 (391)
....+.-..+.+||+|++-... .+.++-.. .+--+++..||-.|+
T Consensus 217 -----~~l~krkTilFiDEiHRFNksQ----QD~fLP~V-E~G~I~lIGATTENP 261 (554)
T KOG2028|consen 217 -----KSLTKRKTILFIDEIHRFNKSQ----QDTFLPHV-ENGDITLIGATTENP 261 (554)
T ss_pred -----HhhhcceeEEEeHHhhhhhhhh----hhccccee-ccCceEEEecccCCC
Confidence 1112345688999999863221 11111111 234567777776655
|
|
| >PRK05707 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.035 Score=52.45 Aligned_cols=40 Identities=23% Similarity=0.316 Sum_probs=29.9
Q ss_pred CcHHHHHHHHHHhc-C---CcEEEEecCCcchHHHHHHHHHHHH
Q psy6275 58 LDPFQKEAILCIEN-N---QSVLVSAHTSAGKTVVAEYAIASSL 97 (391)
Q Consensus 58 ~~~~Q~~~i~~i~~-~---~~~li~apTGsGKT~~~~~~~~~~l 97 (391)
++|||...+..+.. + +-.++.||.|.|||..+...+...+
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~ll 47 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALL 47 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHc
Confidence 46899999987754 3 2488999999999987765554443
|
|
| >cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.074 Score=48.76 Aligned_cols=40 Identities=20% Similarity=0.211 Sum_probs=31.0
Q ss_pred HhcCCcEEEEecCCcchHHHHHHHHHHHHhc-CCeEEEEcc
Q psy6275 69 IENNQSVLVSAHTSAGKTVVAEYAIASSLKQ-SQRVIYTTP 108 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~~~~~~~~l~~-~~~vlvl~P 108 (391)
+..|..+++.|+||+|||......+.+.... +.+++|+.-
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 3567889999999999998776666665555 778888853
|
Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands. |
| >CHL00181 cbbX CbbX; Provisional | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.059 Score=49.95 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=17.6
Q ss_pred CCcEEEEecCCcchHHHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~ 93 (391)
+.++++.||+|+|||..+-...
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la 80 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMA 80 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 4568999999999999875443
|
|
| >COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.051 Score=52.37 Aligned_cols=105 Identities=18% Similarity=0.265 Sum_probs=56.6
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcC--CeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQS--QRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEI 149 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~--~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~ 149 (391)
...+++.||+|+|||-......-.....+ .+++++....- ..+....++.
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f-~~~~v~a~~~--------------------------- 164 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDF-TNDFVKALRD--------------------------- 164 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHH-HHHHHHHHHh---------------------------
Confidence 35699999999999987554444444443 36666644321 1111111111
Q ss_pred HHHHHhcCccccCccceEEEecccccCcc-ccchhHHHHHHHh-CCCCcEEEEcccCCCh
Q psy6275 150 LRNMLYRGSEITREVGWVIFDEIHYMRDK-ERGYVWEETLILL-SDNVRFVFLSATIPNA 207 (391)
Q Consensus 150 l~~~l~~~~~~l~~~~~lViDE~h~~~~~-~~~~~~~~i~~~~-~~~~~~i~~SAT~~~~ 207 (391)
+-+.+-+... +++++++|+++.+... .....+-.++..+ ..+.|+++.|-.+|..
T Consensus 165 --~~~~~Fk~~y-~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~ 221 (408)
T COG0593 165 --NEMEKFKEKY-SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKE 221 (408)
T ss_pred --hhHHHHHHhh-ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchh
Confidence 0011111224 7999999999987543 1222222333333 3445777777666654
|
|
| >TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.03 Score=62.27 Aligned_cols=66 Identities=27% Similarity=0.303 Sum_probs=54.4
Q ss_pred CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcC---CeEEEEcccHHHHHHHHHHHHHhcc
Q psy6275 58 LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQS---QRVIYTTPIKALSNQKYREFEEQFK 125 (391)
Q Consensus 58 ~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~---~~vlvl~P~~~L~~q~~~~~~~~~~ 125 (391)
+|+-|.++|. ..+++++|.|+-|||||.+...-++..+..+ .++++++=|+..+.++..++.....
T Consensus 2 ~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~~l~ 70 (1232)
T TIGR02785 2 WTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEEALQ 70 (1232)
T ss_pred CCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHHHHH
Confidence 5899999997 4788999999999999999877777666443 4699999999999888888777543
|
AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species. |
| >TIGR02881 spore_V_K stage V sporulation protein K | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.066 Score=48.93 Aligned_cols=20 Identities=25% Similarity=0.371 Sum_probs=16.7
Q ss_pred CcEEEEecCCcchHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~ 92 (391)
.++++.||+|+|||..+-..
T Consensus 43 ~~vll~GppGtGKTtlA~~i 62 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARIL 62 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHH
Confidence 57899999999999986444
|
Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group. |
| >PRK13342 recombination factor protein RarA; Reviewed | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.049 Score=53.32 Aligned_cols=20 Identities=25% Similarity=0.355 Sum_probs=16.5
Q ss_pred CcEEEEecCCcchHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~ 92 (391)
.++++.||+|+|||..+...
T Consensus 37 ~~ilL~GppGtGKTtLA~~i 56 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARII 56 (413)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 47999999999999876544
|
|
| >TIGR02012 tigrfam_recA protein RecA | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.012 Score=55.03 Aligned_cols=90 Identities=18% Similarity=0.145 Sum_probs=55.3
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcH---
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTT--- 147 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp--- 147 (391)
.|.-+.+.||+|+|||...+..+.+....+.+++|+.....+..+.. +.+.-+. .++++..|
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a---~~lGvd~------------~~l~v~~p~~~ 118 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYA---RKLGVDI------------DNLLVSQPDTG 118 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHH---HHcCCCH------------HHeEEecCCCH
Confidence 34678899999999999888777777778899999976665554422 2221111 12334443
Q ss_pred HHHHHHHhcCccccCccceEEEecccccC
Q psy6275 148 EILRNMLYRGSEITREVGWVIFDEIHYMR 176 (391)
Q Consensus 148 ~~l~~~l~~~~~~l~~~~~lViDE~h~~~ 176 (391)
+..+..+..- ..-..++++|+|-+-.+.
T Consensus 119 eq~l~~~~~l-i~~~~~~lIVIDSv~al~ 146 (321)
T TIGR02012 119 EQALEIAETL-VRSGAVDIIVVDSVAALV 146 (321)
T ss_pred HHHHHHHHHH-hhccCCcEEEEcchhhhc
Confidence 2233222211 111368999999988653
|
This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage. |
| >PF05729 NACHT: NACHT domain | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.063 Score=44.78 Aligned_cols=42 Identities=10% Similarity=0.180 Sum_probs=26.6
Q ss_pred cEEEEecCCcchHHHHHHHHHHHHhcC-----CeEEEEcccHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASSLKQS-----QRVIYTTPIKALSNQ 115 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~l~~~-----~~vlvl~P~~~L~~q 115 (391)
-++|.|++|+|||......+....... ..+.+..+.+....+
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDS 48 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhc
Confidence 478999999999997655554444332 134555555555443
|
|
| >COG4626 Phage terminase-like protein, large subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.11 Score=51.35 Aligned_cols=151 Identities=14% Similarity=0.172 Sum_probs=88.4
Q ss_pred CCCccCCCCCcHHHHHHHHHHh------cC----CcEEEEecCCcchHHHHHHHHHHHH----hcCCeEEEEcccHHHHH
Q psy6275 49 KPAREYPFVLDPFQKEAILCIE------NN----QSVLVSAHTSAGKTVVAEYAIASSL----KQSQRVIYTTPIKALSN 114 (391)
Q Consensus 49 ~~~~~~~~~~~~~Q~~~i~~i~------~~----~~~li~apTGsGKT~~~~~~~~~~l----~~~~~vlvl~P~~~L~~ 114 (391)
......++.+-|||.-++-.+. .+ +..+|..|-+-|||..+...+...+ ..+..+.+++|+.+-+.
T Consensus 53 ~~~~~~p~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~ 132 (546)
T COG4626 53 PGSPGFPESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAA 132 (546)
T ss_pred CCCCCCccccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHH
Confidence 3345667789999999998774 12 3578999999999986542222211 45789999999999999
Q ss_pred HHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHH---HHHHHhcCcc--ccCccceEEEecccccCccccchhHHHHHH
Q psy6275 115 QKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEI---LRNMLYRGSE--ITREVGWVIFDEIHYMRDKERGYVWEETLI 189 (391)
Q Consensus 115 q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~---l~~~l~~~~~--~l~~~~~lViDE~h~~~~~~~~~~~~~i~~ 189 (391)
+.+...+.......-+.-. .+-+.+....+... ....+..... .=.+..+.|+||.|...+.+ ..+..+..
T Consensus 133 ~~F~~ar~mv~~~~~l~~~--~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~--~~~~~~~~ 208 (546)
T COG4626 133 NSFNPARDMVKRDDDLRDL--CNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE--DMYSEAKG 208 (546)
T ss_pred HhhHHHHHHHHhCcchhhh--hccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH--HHHHHHHh
Confidence 9988887766532211000 11112221122221 1122222221 22256799999999876532 34444443
Q ss_pred Hh--CCCCcEEEEccc
Q psy6275 190 LL--SDNVRFVFLSAT 203 (391)
Q Consensus 190 ~~--~~~~~~i~~SAT 203 (391)
.+ .++.+++..|..
T Consensus 209 g~~ar~~~l~~~ITT~ 224 (546)
T COG4626 209 GLGARPEGLVVYITTS 224 (546)
T ss_pred hhccCcCceEEEEecC
Confidence 33 345667766653
|
|
| >TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.14 Score=49.78 Aligned_cols=125 Identities=11% Similarity=0.201 Sum_probs=72.6
Q ss_pred cEEEEecCCcchHHHHHHHHHH-HHh--cCCeEEEEcccHH-HHHHHHHHHHHhcccceee---e-CCc--c--cCC-CC
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIAS-SLK--QSQRVIYTTPIKA-LSNQKYREFEEQFKDVGLI---T-GDV--T--INP-SS 140 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~-~l~--~~~~vlvl~P~~~-L~~q~~~~~~~~~~~v~~~---~-g~~--~--~~~-~~ 140 (391)
..++.|+.|||||.+....++. .+. .+.+++++-|+.. +...++..+.......++. . ... . ... ..
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~~i~~~~~g~ 82 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSMEIKILNTGK 82 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCccEEEecCCCe
Confidence 4688999999999987655444 444 5788999988865 7777777777655433221 0 111 0 111 22
Q ss_pred CEEEEcH-HHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhC--CCCcEEEEcccCCCh
Q psy6275 141 SCLIMTT-EILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLS--DNVRFVFLSATIPNA 207 (391)
Q Consensus 141 ~I~v~Tp-~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~--~~~~~i~~SAT~~~~ 207 (391)
.|++..- +.... + .....++++.+|||..+.. ..++.++..++ .....+.+|.||...
T Consensus 83 ~i~f~g~~d~~~~-i----k~~~~~~~~~idEa~~~~~----~~~~~l~~rlr~~~~~~~i~~t~NP~~~ 143 (396)
T TIGR01547 83 KFIFKGLNDKPNK-L----KSGAGIAIIWFEEASQLTF----EDIKELIPRLRETGGKKFIIFSSNPESP 143 (396)
T ss_pred EEEeecccCChhH-h----hCcceeeeehhhhhhhcCH----HHHHHHHHHhhccCCccEEEEEcCcCCC
Confidence 2333222 11111 1 1123478999999998743 25555555554 222357889998764
|
This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354. |
| >COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.04 Score=51.80 Aligned_cols=26 Identities=23% Similarity=0.132 Sum_probs=20.2
Q ss_pred CCc-EEEEecCCcchHHHHHHHHHHHH
Q psy6275 72 NQS-VLVSAHTSAGKTVVAEYAIASSL 97 (391)
Q Consensus 72 ~~~-~li~apTGsGKT~~~~~~~~~~l 97 (391)
..+ +++.||+|+|||.++....-...
T Consensus 23 ~~halL~~Gp~G~Gktt~a~~lA~~l~ 49 (325)
T COG0470 23 LPHALLFYGPPGVGKTTAALALAKELL 49 (325)
T ss_pred CCceeeeeCCCCCCHHHHHHHHHHHHh
Confidence 456 99999999999998766555544
|
|
| >PRK07003 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.029 Score=57.93 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=17.1
Q ss_pred cEEEEecCCcchHHHHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIAS 95 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~ 95 (391)
-+|++||.|+|||.+.......
T Consensus 40 AyLFtGPpGvGKTTlAriLAKa 61 (830)
T PRK07003 40 AYLFTGTRGVGKTTLSRIFAKA 61 (830)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3689999999999876555433
|
|
| >PRK14956 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.042 Score=54.09 Aligned_cols=22 Identities=18% Similarity=0.225 Sum_probs=17.5
Q ss_pred cEEEEecCCcchHHHHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIAS 95 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~ 95 (391)
.++++||.|+|||.++...+..
T Consensus 42 a~Lf~GP~GtGKTTlAriLAk~ 63 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARILAKR 63 (484)
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3799999999999987655443
|
|
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.23 Score=48.59 Aligned_cols=120 Identities=13% Similarity=0.098 Sum_probs=60.2
Q ss_pred cEEEEecCCcchHHHHHHHHHHHHhc-CCeEEEEc--ccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASSLKQ-SQRVIYTT--PIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEIL 150 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~l~~-~~~vlvl~--P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l 150 (391)
-++++|++|+|||++..-.+...... +.+++++. +.|..+.++...+.+.. .+.++..... ..|..+
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~-gv~v~~~~~~---------~dp~~i 171 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQI-GVPVFPSGDG---------QDPVDI 171 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhc-CCeEEecCCC---------CCHHHH
Confidence 47899999999999876555544455 66776664 45555543333333332 2222211100 134333
Q ss_pred HH-HHhcCccccCccceEEEecccccCc-cccchhHHHHHHHhCCCCcEEEEcccCC
Q psy6275 151 RN-MLYRGSEITREVGWVIFDEIHYMRD-KERGYVWEETLILLSDNVRFVFLSATIP 205 (391)
Q Consensus 151 ~~-~l~~~~~~l~~~~~lViDE~h~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 205 (391)
.. .+... ....++++|+|=+-++.. ...-..+..+.....+.--++.++|+..
T Consensus 172 ~~~a~~~a--~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g 226 (433)
T PRK10867 172 AKAALEEA--KENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG 226 (433)
T ss_pred HHHHHHHH--HhcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH
Confidence 32 22111 123678899998876531 1111122233333333334666677653
|
|
| >PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.05 Score=46.15 Aligned_cols=139 Identities=12% Similarity=0.003 Sum_probs=71.4
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcc--cC-CCCC-EEEEcHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVT--IN-PSSS-CLIMTTE 148 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~--~~-~~~~-I~v~Tp~ 148 (391)
.-+.+.-..|-|||++++--+++....+.+|+++.=.+.-...-...+-+....+.....+.. .. .+.. .-.....
T Consensus 22 Gli~VYtGdGKGKTTAAlGlalRAaG~G~rV~iiQFlKg~~~~GE~~~l~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~ 101 (178)
T PRK07414 22 GLVQVFTSSQRNFFTSVMAQALRIAGQGTPVLIVQFLKGGIQQGPDRPIQLGQNLDWVRCDLPRCLDTPHLDESEKKALQ 101 (178)
T ss_pred CEEEEEeCCCCCchHHHHHHHHHHhcCCCEEEEEEEecCCCcchHHHHHHhCCCcEEEECCCCCeeeCCCcCHHHHHHHH
Confidence 346777888999999999999999999999999975554321111222222333433332221 10 0100 0001111
Q ss_pred HHHHHHhcCccccCccceEEEecccccCccccch--hHHHHHHHhCCCCcEEEEcccCCCh-HHHHH
Q psy6275 149 ILRNMLYRGSEITREVGWVIFDEIHYMRDKERGY--VWEETLILLSDNVRFVFLSATIPNA-SQFAQ 212 (391)
Q Consensus 149 ~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~--~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~ 212 (391)
..+....+ ...-..++++|+||+-...+.++-. .+..++...|...-+|+..-.+|+. .+.++
T Consensus 102 ~~~~~a~~-~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie~AD 167 (178)
T PRK07414 102 ELWQYTQA-VVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLAIAD 167 (178)
T ss_pred HHHHHHHH-HHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCC
Confidence 12121111 1112479999999998765543322 2333444445555555544444433 33444
|
|
| >PRK09112 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.04 Score=52.52 Aligned_cols=30 Identities=17% Similarity=0.190 Sum_probs=21.4
Q ss_pred HhcCC---cEEEEecCCcchHHHHHHHHHHHHh
Q psy6275 69 IENNQ---SVLVSAHTSAGKTVVAEYAIASSLK 98 (391)
Q Consensus 69 i~~~~---~~li~apTGsGKT~~~~~~~~~~l~ 98 (391)
+.+++ .+++.||.|+|||..+...+...+.
T Consensus 39 ~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 39 YREGKLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred HHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 44554 4899999999999876655544443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.086 Score=57.06 Aligned_cols=43 Identities=21% Similarity=0.321 Sum_probs=31.6
Q ss_pred ccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEcccCC
Q psy6275 163 EVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIP 205 (391)
Q Consensus 163 ~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 205 (391)
.--++|+|++|.+.+......+..++...+.+..+|+.|=+.+
T Consensus 121 ~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~ 163 (903)
T PRK04841 121 QPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLP 163 (903)
T ss_pred CCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCC
Confidence 3458999999998655444566677777888888888776643
|
|
| >PRK06620 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.037 Score=48.91 Aligned_cols=18 Identities=28% Similarity=0.499 Sum_probs=15.3
Q ss_pred CcEEEEecCCcchHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAE 90 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~ 90 (391)
+.++++||+|+|||....
T Consensus 45 ~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 448999999999998754
|
|
| >TIGR02688 conserved hypothetical protein TIGR02688 | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.072 Score=51.42 Aligned_cols=26 Identities=15% Similarity=0.201 Sum_probs=21.6
Q ss_pred HHHhcCCcEEEEecCCcchHHHHHHH
Q psy6275 67 LCIENNQSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 67 ~~i~~~~~~li~apTGsGKT~~~~~~ 92 (391)
+.+.++.|++..||+|+|||..|...
T Consensus 204 ~fve~~~Nli~lGp~GTGKThla~~l 229 (449)
T TIGR02688 204 PLVEPNYNLIELGPKGTGKSYIYNNL 229 (449)
T ss_pred HHHhcCCcEEEECCCCCCHHHHHHHH
Confidence 45678899999999999999877543
|
Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687. |
| >PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.03 Score=47.21 Aligned_cols=122 Identities=16% Similarity=0.130 Sum_probs=55.7
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHh-cccceeeeCCcccCCCCCEEEEcHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQ-FKDVGLITGDVTINPSSSCLIMTTEILR 151 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~-~~~v~~~~g~~~~~~~~~I~v~Tp~~l~ 151 (391)
+.+++.||.|+||+..+...+...+....... .+..-.-.. .+... ..++..+..+.. ...|-+-....+.
T Consensus 20 ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~-~c~~c~~c~----~~~~~~~~d~~~~~~~~~---~~~i~i~~ir~i~ 91 (162)
T PF13177_consen 20 HALLFHGPSGSGKKTLALAFARALLCSNPNED-PCGECRSCR----RIEEGNHPDFIIIKPDKK---KKSIKIDQIREII 91 (162)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT---SSSHHHH----HHHTT-CTTEEEEETTTS---SSSBSHHHHHHHH
T ss_pred eeEEEECCCCCCHHHHHHHHHHHHcCCCCCCC-CCCCCHHHH----HHHhccCcceEEEecccc---cchhhHHHHHHHH
Confidence 34799999999999887666655543321100 111111111 11111 112222211111 1123222222233
Q ss_pred HHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEcccC
Q psy6275 152 NMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATI 204 (391)
Q Consensus 152 ~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 204 (391)
..+..... ....+++|+||||.|... -...+...+..-+.+..+++.|..+
T Consensus 92 ~~~~~~~~-~~~~KviiI~~ad~l~~~-a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 92 EFLSLSPS-EGKYKVIIIDEADKLTEE-AQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp HHCTSS-T-TSSSEEEEEETGGGS-HH-HHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred HHHHHHHh-cCCceEEEeehHhhhhHH-HHHHHHHHhcCCCCCEEEEEEECCh
Confidence 33322222 357899999999998543 1223334444445566666666554
|
... |
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.029 Score=48.46 Aligned_cols=50 Identities=24% Similarity=0.427 Sum_probs=35.4
Q ss_pred CcHHHHHHHHH-HhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcc
Q psy6275 58 LDPFQKEAILC-IENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTP 108 (391)
Q Consensus 58 ~~~~Q~~~i~~-i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P 108 (391)
+++-|.+.+.. +..+.+++++||||||||+.. ..++..+....+++.+--
T Consensus 10 ~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll-~aL~~~i~~~~~~i~ied 60 (186)
T cd01130 10 FSPLQAAYLWLAVEARKNILISGGTGSGKTTLL-NALLAFIPPDERIITIED 60 (186)
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH-HHHHhhcCCCCCEEEECC
Confidence 66777777775 467889999999999999874 334455555556665533
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >PRK08691 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.03 Score=57.44 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=18.3
Q ss_pred cEEEEecCCcchHHHHHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASS 96 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~ 96 (391)
.+|++||.|+|||.++...+...
T Consensus 40 a~Lf~GP~GvGKTTlAriLAk~L 62 (709)
T PRK08691 40 AYLLTGTRGVGKTTIARILAKSL 62 (709)
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 57999999999999876555443
|
|
| >PRK14958 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.026 Score=56.59 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=17.8
Q ss_pred cEEEEecCCcchHHHHHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASS 96 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~ 96 (391)
-++++||.|+|||.++.+.+...
T Consensus 40 a~Lf~Gp~G~GKTt~A~~lAk~l 62 (509)
T PRK14958 40 AYLFTGTRGVGKTTISRILAKCL 62 (509)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 37999999999998876555443
|
|
| >COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.075 Score=48.49 Aligned_cols=55 Identities=15% Similarity=0.195 Sum_probs=42.7
Q ss_pred hcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK 125 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~ 125 (391)
-.|+.+++.|++|+|||...+-.+.+.+..+-++++++ +.+...++.+.+..+..
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs-~~e~~~~l~~~~~~~g~ 75 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVS-TEESPEELLENARSFGW 75 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE-ecCCHHHHHHHHHHcCC
Confidence 35788999999999999988888888888877888874 46666666666666444
|
|
| >PRK08769 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.099 Score=49.08 Aligned_cols=137 Identities=15% Similarity=0.065 Sum_probs=66.6
Q ss_pred CcHHHHHHHHHHh----cCC---cEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhc-cccee
Q psy6275 58 LDPFQKEAILCIE----NNQ---SVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQF-KDVGL 129 (391)
Q Consensus 58 ~~~~Q~~~i~~i~----~~~---~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~-~~v~~ 129 (391)
++|||..++..+. +++ -+++.||.|.||+..+...+...+..+....=-++. ...+..-. .++..
T Consensus 5 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~-------c~~~~~g~HPD~~~ 77 (319)
T PRK08769 5 FSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRT-------RQLIAAGTHPDLQL 77 (319)
T ss_pred ccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchH-------HHHHhcCCCCCEEE
Confidence 7899999988653 343 489999999999987765554444332110000000 01111111 13322
Q ss_pred eeC--Cc-ccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEccc
Q psy6275 130 ITG--DV-TINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSAT 203 (391)
Q Consensus 130 ~~g--~~-~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 203 (391)
+.. +. ....+..|.|-....+.+.+...+ .....+++|||+||.|.... ...+-++++.-+.+..+|+.|..
T Consensus 78 i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p-~~g~~kV~iI~~ae~m~~~A-aNaLLKtLEEPp~~~~fiL~~~~ 152 (319)
T PRK08769 78 VSFIPNRTGDKLRTEIVIEQVREISQKLALTP-QYGIAQVVIVDPADAINRAA-CNALLKTLEEPSPGRYLWLISAQ 152 (319)
T ss_pred EecCCCcccccccccccHHHHHHHHHHHhhCc-ccCCcEEEEeccHhhhCHHH-HHHHHHHhhCCCCCCeEEEEECC
Confidence 210 00 000012233322222333333222 23578999999999985321 22233344444455666666543
|
|
| >PRK13900 type IV secretion system ATPase VirB11; Provisional | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.017 Score=54.60 Aligned_cols=44 Identities=20% Similarity=0.341 Sum_probs=34.2
Q ss_pred HhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHH
Q psy6275 69 IENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALS 113 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~ 113 (391)
+..+++++++|+||||||+. +-+++..+....+++.+=-+.|+.
T Consensus 157 v~~~~nili~G~tgSGKTTl-l~aL~~~ip~~~ri~tiEd~~El~ 200 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTTF-TNAALREIPAIERLITVEDAREIV 200 (332)
T ss_pred HHcCCcEEEECCCCCCHHHH-HHHHHhhCCCCCeEEEecCCCccc
Confidence 45788999999999999976 455667777778888876666654
|
|
| >PRK07994 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.039 Score=56.54 Aligned_cols=22 Identities=27% Similarity=0.302 Sum_probs=17.2
Q ss_pred EEEEecCCcchHHHHHHHHHHH
Q psy6275 75 VLVSAHTSAGKTVVAEYAIASS 96 (391)
Q Consensus 75 ~li~apTGsGKT~~~~~~~~~~ 96 (391)
++++||.|+|||.++...+...
T Consensus 41 yLf~Gp~GvGKTTlAr~lAk~L 62 (647)
T PRK07994 41 YLFSGTRGVGKTTIARLLAKGL 62 (647)
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 6899999999999875554433
|
|
| >PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.021 Score=51.07 Aligned_cols=19 Identities=16% Similarity=0.373 Sum_probs=14.5
Q ss_pred EEEEecCCcchHHHHHHHH
Q psy6275 75 VLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 75 ~li~apTGsGKT~~~~~~~ 93 (391)
+++.|++|||||....-.+
T Consensus 1 ~vv~G~pGsGKSt~i~~~~ 19 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLL 19 (234)
T ss_pred CEEEcCCCCCHHHHHHHHH
Confidence 4789999999998644333
|
Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity |
| >TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.027 Score=50.63 Aligned_cols=53 Identities=19% Similarity=0.264 Sum_probs=40.2
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhc
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQF 124 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~ 124 (391)
.|..+++.||+|+|||...+..+...+.++.+++|+. +.+-..++.+.+..+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs-~ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA-LEEHPVQVRRNMAQFG 72 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE-eeCCHHHHHHHHHHhC
Confidence 4677999999999999988777777777788898887 4455566666665544
|
Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga. |
| >TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.084 Score=48.87 Aligned_cols=19 Identities=26% Similarity=0.316 Sum_probs=16.2
Q ss_pred CCcEEEEecCCcchHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAE 90 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~ 90 (391)
+.++++.||+|+|||.++.
T Consensus 58 ~~~vll~G~pGTGKT~lA~ 76 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVAL 76 (284)
T ss_pred CceEEEEcCCCCCHHHHHH
Confidence 3479999999999998763
|
Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis. |
| >COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.16 Score=43.13 Aligned_cols=136 Identities=20% Similarity=0.148 Sum_probs=70.3
Q ss_pred cEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc-ccee------eeCCcccCCCCCEEEEc
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK-DVGL------ITGDVTINPSSSCLIMT 146 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~-~v~~------~~g~~~~~~~~~I~v~T 146 (391)
-+++....|-|||++++-.+++.+..+.+|.|+.=.+--...-.......+. .+.. ++.+.. +.+.++ ..
T Consensus 30 li~V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQFiKg~~~~GE~~~~~~~~~~v~~~~~~~g~tw~~~-~~~~d~--~a 106 (198)
T COG2109 30 LIIVFTGNGKGKTTAALGLALRALGHGLRVGVVQFIKGGWKYGEEAALEKFGLGVEFHGMGEGFTWETQ-DREADI--AA 106 (198)
T ss_pred eEEEEecCCCChhHHHHHHHHHHhcCCCEEEEEEEeecCcchhHHHHHHhhccceeEEecCCceeCCCc-CcHHHH--HH
Confidence 3678888899999999999999999999999986443221111122222211 2211 111111 112233 22
Q ss_pred HHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhC--CCCcEEEEccc-CCCh-HHHHHHh
Q psy6275 147 TEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLS--DNVRFVFLSAT-IPNA-SQFAQWV 214 (391)
Q Consensus 147 p~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~--~~~~~i~~SAT-~~~~-~~~~~~l 214 (391)
....+.....-. .-..++++|+||.-..+..++-+ ++.++..+. +.-+-+.+|.. .|.. .+.++.+
T Consensus 107 a~~~w~~a~~~l-~~~~ydlviLDEl~~al~~g~l~-~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ADlV 176 (198)
T COG2109 107 AKAGWEHAKEAL-ADGKYDLVILDELNYALRYGLLP-LEEVVALLKARPEHTHVIITGRGAPPELIELADLV 176 (198)
T ss_pred HHHHHHHHHHHH-hCCCCCEEEEehhhHHHHcCCCC-HHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHHH
Confidence 333322222111 11269999999998766544332 334444332 23444555554 3333 4455544
|
|
| >COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.044 Score=56.91 Aligned_cols=119 Identities=18% Similarity=0.154 Sum_probs=75.0
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc----cceee
Q psy6275 55 PFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK----DVGLI 130 (391)
Q Consensus 55 ~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~----~v~~~ 130 (391)
|..+..+|.-.- +.-+..-+.-.-||=|||+++.+|+.-..-.+..|.++.-..=|+..-..++..++. .+++.
T Consensus 78 g~~~~dVQliG~--i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~gkgVhvVTvNdYLA~RDae~m~~l~~~LGlsvG~~ 155 (822)
T COG0653 78 GMRHFDVQLLGG--IVLHLGDIAEMRTGEGKTLVATLPAYLNALAGKGVHVVTVNDYLARRDAEWMGPLYEFLGLSVGVI 155 (822)
T ss_pred CCChhhHHHhhh--hhhcCCceeeeecCCchHHHHHHHHHHHhcCCCCcEEeeehHHhhhhCHHHHHHHHHHcCCceeec
Confidence 445566665544 433444588999999999999888644434566677777777776655566555554 56665
Q ss_pred eCCcccCC-----CCCEEEEcHHHHH-HHHh------cCccccCccceEEEeccccc
Q psy6275 131 TGDVTINP-----SSSCLIMTTEILR-NMLY------RGSEITREVGWVIFDEIHYM 175 (391)
Q Consensus 131 ~g~~~~~~-----~~~I~v~Tp~~l~-~~l~------~~~~~l~~~~~lViDE~h~~ 175 (391)
..+..... .++|+.+|...+- +++. ......+.+.+.|+||+|.+
T Consensus 156 ~~~m~~~ek~~aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSI 212 (822)
T COG0653 156 LAGMSPEEKRAAYACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSI 212 (822)
T ss_pred cCCCChHHHHHHHhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhhe
Confidence 55554332 5789999975421 1111 11233456889999999975
|
|
| >PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2 | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.02 Score=48.86 Aligned_cols=38 Identities=13% Similarity=0.097 Sum_probs=28.9
Q ss_pred cEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKA 111 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~ 111 (391)
-.++.||.+||||.-.+--+.+.-..+.+++++-|...
T Consensus 3 l~~i~GpM~sGKS~eLi~~~~~~~~~~~~v~~~kp~~D 40 (176)
T PF00265_consen 3 LEFITGPMFSGKSTELIRRIHRYEIAGKKVLVFKPAID 40 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEEESTS
T ss_pred EEEEECCcCChhHHHHHHHHHHHHhCCCeEEEEEeccc
Confidence 35789999999999876666655567889999988543
|
7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F .... |
| >PRK09354 recA recombinase A; Provisional | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.022 Score=53.86 Aligned_cols=89 Identities=19% Similarity=0.157 Sum_probs=56.6
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcH---H
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTT---E 148 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp---~ 148 (391)
|+-+.+.||+|+|||...+..+.+....+.+++|+....++-.+.+ +.+.-++ .++++..| +
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a---~~lGvdl------------d~lli~qp~~~E 124 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYA---KKLGVDI------------DNLLVSQPDTGE 124 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHH---HHcCCCH------------HHeEEecCCCHH
Confidence 4568899999999999988888787788999999987776665332 2222111 12344433 3
Q ss_pred HHHHHHhcCccccCccceEEEecccccC
Q psy6275 149 ILRNMLYRGSEITREVGWVIFDEIHYMR 176 (391)
Q Consensus 149 ~l~~~l~~~~~~l~~~~~lViDE~h~~~ 176 (391)
..+..+..-. .-..+++||+|=+-.+.
T Consensus 125 q~l~i~~~li-~s~~~~lIVIDSvaaL~ 151 (349)
T PRK09354 125 QALEIADTLV-RSGAVDLIVVDSVAALV 151 (349)
T ss_pred HHHHHHHHHh-hcCCCCEEEEeChhhhc
Confidence 3333332111 11368899999887653
|
|
| >COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.075 Score=54.03 Aligned_cols=115 Identities=14% Similarity=0.156 Sum_probs=69.6
Q ss_pred CCccCCCCCcHHHHHHHHHH--------hcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHH
Q psy6275 50 PAREYPFVLDPFQKEAILCI--------ENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFE 121 (391)
Q Consensus 50 ~~~~~~~~~~~~Q~~~i~~i--------~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~ 121 (391)
-|.+-.|.+-.+-.+.++.+ ..|.-+.++||+|.|||... ..+++.+.
T Consensus 320 iLd~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLg------------------------kSIA~al~ 375 (782)
T COG0466 320 ILDKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLG------------------------KSIAKALG 375 (782)
T ss_pred HhcccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHH------------------------HHHHHHhC
Confidence 34444566667666666643 23445779999999999642 22233333
Q ss_pred Hhcc--cceeeeCCcccCCCCCEEEE-cHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHh
Q psy6275 122 EQFK--DVGLITGDVTINPSSSCLIM-TTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILL 191 (391)
Q Consensus 122 ~~~~--~v~~~~g~~~~~~~~~I~v~-Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~ 191 (391)
+.+- .+|-+.....++...+-.|+ -||++.+-+.+... .=-++++||+|.|....+|.--..++.-+
T Consensus 376 RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~---~NPv~LLDEIDKm~ss~rGDPaSALLEVL 445 (782)
T COG0466 376 RKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGV---KNPVFLLDEIDKMGSSFRGDPASALLEVL 445 (782)
T ss_pred CCEEEEecCccccHHHhccccccccccCChHHHHHHHHhCC---cCCeEEeechhhccCCCCCChHHHHHhhc
Confidence 3222 12223333334444455554 49999988876433 22389999999998777776666666655
|
|
| >COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.14 Score=48.84 Aligned_cols=94 Identities=15% Similarity=0.176 Sum_probs=59.6
Q ss_pred HHHHHHhc-----CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCC
Q psy6275 64 EAILCIEN-----NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINP 138 (391)
Q Consensus 64 ~~i~~i~~-----~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~ 138 (391)
.-++.++. |.-+++.|.+|.|||+..+..+.+...++ ++||+.- .|-..|+.-+..++.-.
T Consensus 80 ~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsG-EES~~QiklRA~RL~~~------------ 145 (456)
T COG1066 80 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSG-EESLQQIKLRADRLGLP------------ 145 (456)
T ss_pred HHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeC-CcCHHHHHHHHHHhCCC------------
Confidence 33455544 45688999999999988665555554445 9999965 55567777776665310
Q ss_pred CCCEEEEcH---HHHHHHHhcCccccCccceEEEecccccC
Q psy6275 139 SSSCLIMTT---EILRNMLYRGSEITREVGWVIFDEIHYMR 176 (391)
Q Consensus 139 ~~~I~v~Tp---~~l~~~l~~~~~~l~~~~~lViDE~h~~~ 176 (391)
..++.+... +.+...+.+ .+.+++|+|=++.+.
T Consensus 146 ~~~l~l~aEt~~e~I~~~l~~-----~~p~lvVIDSIQT~~ 181 (456)
T COG1066 146 TNNLYLLAETNLEDIIAELEQ-----EKPDLVVIDSIQTLY 181 (456)
T ss_pred ccceEEehhcCHHHHHHHHHh-----cCCCEEEEeccceee
Confidence 133444333 333333433 378899999999874
|
|
| >PRK14949 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.076 Score=55.93 Aligned_cols=21 Identities=24% Similarity=0.284 Sum_probs=16.9
Q ss_pred EEEEecCCcchHHHHHHHHHH
Q psy6275 75 VLVSAHTSAGKTVVAEYAIAS 95 (391)
Q Consensus 75 ~li~apTGsGKT~~~~~~~~~ 95 (391)
+|++||.|+|||.++...+..
T Consensus 41 yLFtGPpGtGKTTLARiLAk~ 61 (944)
T PRK14949 41 YLFTGTRGVGKTSLARLFAKG 61 (944)
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 589999999999987655543
|
|
| >PF12846 AAA_10: AAA-like domain | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.028 Score=52.13 Aligned_cols=43 Identities=23% Similarity=0.364 Sum_probs=36.1
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSN 114 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~ 114 (391)
+.++++.|+||+|||......+.+.+..+..++++=|..+...
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRRGPRVVIFDPKGDYSP 43 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHcCCCEEEEcCCchHHH
Confidence 3689999999999999888777777788999999988866655
|
|
| >PRK14960 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.048 Score=55.61 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=18.0
Q ss_pred cEEEEecCCcchHHHHHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASS 96 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~ 96 (391)
.++++||.|+|||.++.+.+...
T Consensus 39 AyLF~GPpGvGKTTlAriLAK~L 61 (702)
T PRK14960 39 AYLFTGTRGVGKTTIARILAKCL 61 (702)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46999999999999876555443
|
|
| >KOG0058|consensus | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.056 Score=55.00 Aligned_cols=48 Identities=19% Similarity=0.362 Sum_probs=31.3
Q ss_pred HHhcCCcEEEEecCCcchHHHHHHHHHHHH--hcCCeEEEE-cccHHHHHHHH
Q psy6275 68 CIENNQSVLVSAHTSAGKTVVAEYAIASSL--KQSQRVIYT-TPIKALSNQKY 117 (391)
Q Consensus 68 ~i~~~~~~li~apTGsGKT~~~~~~~~~~l--~~~~~vlvl-~P~~~L~~q~~ 117 (391)
.+..|+.+-++||.|+|||+++.+ +..+ ...+++++= +|.+++-..+.
T Consensus 490 ti~pGe~vALVGPSGsGKSTiasL--L~rfY~PtsG~IllDG~~i~~~~~~~l 540 (716)
T KOG0058|consen 490 TIRPGEVVALVGPSGSGKSTIASL--LLRFYDPTSGRILLDGVPISDINHKYL 540 (716)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHH--HHHhcCCCCCeEEECCeehhhcCHHHH
Confidence 457899999999999999997433 3333 334555543 46565544443
|
|
| >PHA00729 NTP-binding motif containing protein | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.058 Score=47.74 Aligned_cols=20 Identities=25% Similarity=0.240 Sum_probs=16.4
Q ss_pred CcEEEEecCCcchHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~ 92 (391)
.++++.|++|+|||..+...
T Consensus 18 ~nIlItG~pGvGKT~LA~aL 37 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKV 37 (226)
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 47999999999999865443
|
|
| >PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.1 Score=47.61 Aligned_cols=133 Identities=17% Similarity=0.160 Sum_probs=72.0
Q ss_pred hcCCcEEEEecCCcchHHHHHHHHHHHHhc-CCeEEEEccc---HHHHHHHHHHHHHhcccceeeeCCccc---------
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEYAIASSLKQ-SQRVIYTTPI---KALSNQKYREFEEQFKDVGLITGDVTI--------- 136 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~~~~~~l~~-~~~vlvl~P~---~~L~~q~~~~~~~~~~~v~~~~g~~~~--------- 136 (391)
..|.-+++.|+||.|||..++-.+.+.... +..|+|+..- .+++..+......... -.+..|....
T Consensus 17 ~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~~R~la~~s~v~~-~~i~~g~l~~~e~~~~~~~ 95 (259)
T PF03796_consen 17 RPGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELAARLLARLSGVPY-NKIRSGDLSDEEFERLQAA 95 (259)
T ss_dssp -TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHHHHHHHHHHTSTH-HHHHCCGCHHHHHHHHHHH
T ss_pred CcCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhhcchh-hhhhccccCHHHHHHHHHH
Confidence 345678999999999999888777777665 5889998653 4444444333322210 0011111110
Q ss_pred ---CCCCCEEE-----EcHHHHHHHHhcCccccCccceEEEecccccCcc----ccchhHHHHHHHh-----CCCCcEEE
Q psy6275 137 ---NPSSSCLI-----MTTEILRNMLYRGSEITREVGWVIFDEIHYMRDK----ERGYVWEETLILL-----SDNVRFVF 199 (391)
Q Consensus 137 ---~~~~~I~v-----~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~----~~~~~~~~i~~~~-----~~~~~~i~ 199 (391)
-.+..+.+ .|++.+.+.+..-......+++||||=.|.+... .....+..+...+ ..+..+++
T Consensus 96 ~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~ 175 (259)
T PF03796_consen 96 AEKLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKALAKELNIPVIA 175 (259)
T ss_dssp HHHHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 00122322 2455565555432222258899999999988553 1222333443333 23577777
Q ss_pred Eccc
Q psy6275 200 LSAT 203 (391)
Q Consensus 200 ~SAT 203 (391)
+|..
T Consensus 176 ~sQl 179 (259)
T PF03796_consen 176 LSQL 179 (259)
T ss_dssp EEEB
T ss_pred cccc
Confidence 7665
|
Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C .... |
| >PRK14963 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.1 Score=52.30 Aligned_cols=21 Identities=29% Similarity=0.300 Sum_probs=16.6
Q ss_pred EEEEecCCcchHHHHHHHHHH
Q psy6275 75 VLVSAHTSAGKTVVAEYAIAS 95 (391)
Q Consensus 75 ~li~apTGsGKT~~~~~~~~~ 95 (391)
++++||+|+|||+++...+..
T Consensus 39 ~Lf~GppGtGKTTlA~~lA~~ 59 (504)
T PRK14963 39 YLFSGPRGVGKTTTARLIAMA 59 (504)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 599999999999987554433
|
|
| >KOG2228|consensus | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.22 Score=46.34 Aligned_cols=131 Identities=15% Similarity=0.169 Sum_probs=71.8
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHH--HHhcCCeEEEEccc--------HHHHHHHHHHHHHhcccceeeeCCcccCCCC
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIAS--SLKQSQRVIYTTPI--------KALSNQKYREFEEQFKDVGLITGDVTINPSS 140 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~--~l~~~~~vlvl~P~--------~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~ 140 (391)
+++.+++.||-|||||...-..+.. ....+.-++=+-++ ++++.|...++.... ...|...
T Consensus 48 EsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~~----k~~gsft----- 118 (408)
T KOG2228|consen 48 ESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQLALELNRIV----KSFGSFT----- 118 (408)
T ss_pred CCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhhh----eeecccc-----
Confidence 4578999999999999754333333 22222223333332 344444444444331 1112111
Q ss_pred CEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhC---CCCcEEEEcccCCChHHHHHHh
Q psy6275 141 SCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLS---DNVRFVFLSATIPNASQFAQWV 214 (391)
Q Consensus 141 ~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~---~~~~~i~~SAT~~~~~~~~~~l 214 (391)
-+-..++..+..+...-+.--.+|+||+|....+.+...+..+..... ...-++++|.-+.--+.+.+..
T Consensus 119 ----e~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~lE~LEKRV 191 (408)
T KOG2228|consen 119 ----ENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDILELLEKRV 191 (408)
T ss_pred ----hhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccHHHHHHHHH
Confidence 012456666666554444445789999998877777766666665433 3455667776663334455543
|
|
| >PRK14962 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.066 Score=53.14 Aligned_cols=20 Identities=25% Similarity=0.335 Sum_probs=16.3
Q ss_pred cEEEEecCCcchHHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~ 93 (391)
.++++||+|+|||..+...+
T Consensus 38 ~~Lf~GPpGtGKTTlA~~lA 57 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARILA 57 (472)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37999999999999875544
|
|
| >PRK12323 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.048 Score=55.47 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=18.1
Q ss_pred cEEEEecCCcchHHHHHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASS 96 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~ 96 (391)
-+|++||.|+|||..+.......
T Consensus 40 A~LFtGP~GvGKTTLAriLAkaL 62 (700)
T PRK12323 40 AYLFTGTRGVGKTTLSRILAKSL 62 (700)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46999999999999876655444
|
|
| >COG3973 Superfamily I DNA and RNA helicases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.14 Score=51.09 Aligned_cols=65 Identities=26% Similarity=0.253 Sum_probs=46.4
Q ss_pred HHHHHHHHHh--cCCcEEEEecCCcchHHHHHHHHHHHHh------cCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy6275 61 FQKEAILCIE--NNQSVLVSAHTSAGKTVVAEYAIASSLK------QSQRVIYTTPIKALSNQKYREFEEQFK 125 (391)
Q Consensus 61 ~Q~~~i~~i~--~~~~~li~apTGsGKT~~~~~~~~~~l~------~~~~vlvl~P~~~L~~q~~~~~~~~~~ 125 (391)
+|.+-=..|. .++-+++.|..|||||.+++.=+...+- +.+.|||+.|.+....-+...+-+++.
T Consensus 213 IQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis~VLPeLGe 285 (747)
T COG3973 213 IQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYISRVLPELGE 285 (747)
T ss_pred hhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHHHhchhhcc
Confidence 4444333443 4566899999999999988654433332 245699999999999988888877765
|
|
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.39 Score=47.03 Aligned_cols=121 Identities=13% Similarity=0.078 Sum_probs=59.0
Q ss_pred cEEEEecCCcchHHHHHHHHHHHH-hcCCeEEEEc--ccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASSL-KQSQRVIYTT--PIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEIL 150 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~l-~~~~~vlvl~--P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l 150 (391)
.++++|++|+|||++..-.+.... ..+.+++++. +.|..+.++...+....+ +.++..... ..|..+
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~g-vp~~~~~~~---------~~P~~i 170 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVG-VPVFALGKG---------QSPVEI 170 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcC-CceEecCCC---------CCHHHH
Confidence 478999999999998755554433 3566777665 345544444444333221 111111100 123222
Q ss_pred H-HHHhcCccccCccceEEEecccccCcc-ccchhHHHHHHHhCCCCcEEEEcccCCC
Q psy6275 151 R-NMLYRGSEITREVGWVIFDEIHYMRDK-ERGYVWEETLILLSDNVRFVFLSATIPN 206 (391)
Q Consensus 151 ~-~~l~~~~~~l~~~~~lViDE~h~~~~~-~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 206 (391)
. ..+.. .....++++|+|=+-.+... ..-..+..+.....+.--++.++|+...
T Consensus 171 ~~~al~~--~~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq 226 (428)
T TIGR00959 171 ARRALEY--AKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ 226 (428)
T ss_pred HHHHHHH--HHhcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH
Confidence 1 11111 01235788999988765321 1111222333333344446666777543
|
This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. |
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.38 Score=47.70 Aligned_cols=115 Identities=19% Similarity=0.221 Sum_probs=57.3
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHH-HhcCC-eEEEEc--ccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASS-LKQSQ-RVIYTT--PIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTT 147 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~-l~~~~-~vlvl~--P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp 147 (391)
++-+.++||||+|||++....+... ...+. ++.++. +.|.-+.+....|.+..+ +.. ..+-.+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilG-Vpv------------~~~~~~ 322 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILG-VPV------------HAVKDA 322 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhC-CCe------------eccCCc
Confidence 4568899999999999875544333 33443 554443 334444444444444432 111 011112
Q ss_pred HHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhC----CCCcEEEEcccCCC
Q psy6275 148 EILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLS----DNVRFVFLSATIPN 206 (391)
Q Consensus 148 ~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~----~~~~~i~~SAT~~~ 206 (391)
..+...+ ..+.+.+++++|.+-+... ...+...+..+. +...++.++||...
T Consensus 323 ~Dl~~aL----~~L~d~d~VLIDTaGr~~~---d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~ 378 (484)
T PRK06995 323 ADLRLAL----SELRNKHIVLIDTIGMSQR---DRMVSEQIAMLHGAGAPVKRLLLLNATSHG 378 (484)
T ss_pred hhHHHHH----HhccCCCeEEeCCCCcChh---hHHHHHHHHHHhccCCCCeeEEEEeCCCcH
Confidence 2222212 1355678999999764321 111222222221 22256778998744
|
|
| >PRK14961 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.059 Score=51.82 Aligned_cols=22 Identities=32% Similarity=0.380 Sum_probs=17.0
Q ss_pred cEEEEecCCcchHHHHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIAS 95 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~ 95 (391)
.+++.||+|+|||..+...+-.
T Consensus 40 ~~L~~Gp~G~GKTtla~~la~~ 61 (363)
T PRK14961 40 AWLLSGTRGVGKTTIARLLAKS 61 (363)
T ss_pred EEEEecCCCCCHHHHHHHHHHH
Confidence 3689999999999886554433
|
|
| >PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.021 Score=50.59 Aligned_cols=36 Identities=25% Similarity=0.424 Sum_probs=22.7
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhc-CCeEEEEcc
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQ-SQRVIYTTP 108 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~-~~~vlvl~P 108 (391)
.+.+++.||.|+|||.... -+...+.. +..++++.+
T Consensus 20 ~~~~~l~G~rg~GKTsLl~-~~~~~~~~~~~~~~y~~~ 56 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLK-EFINELKEKGYKVVYIDF 56 (234)
T ss_dssp SSEEEEEESTTSSHHHHHH-HHHHHCT--EECCCHHCC
T ss_pred CcEEEEEcCCcCCHHHHHH-HHHHHhhhcCCcEEEEec
Confidence 4789999999999998643 33333322 234555544
|
; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A. |
| >PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ] | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.024 Score=52.00 Aligned_cols=52 Identities=19% Similarity=0.280 Sum_probs=36.2
Q ss_pred HHHHHHHHH-HhcCCcEEEEecCCcchHHHHHHHHHHHHhcC-CeEEEEcccHHH
Q psy6275 60 PFQKEAILC-IENNQSVLVSAHTSAGKTVVAEYAIASSLKQS-QRVIYTTPIKAL 112 (391)
Q Consensus 60 ~~Q~~~i~~-i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~-~~vlvl~P~~~L 112 (391)
+...+.+.. +..+.+++++|+||||||+.. ..++..+... .+++++-...|+
T Consensus 114 ~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l-~all~~i~~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 114 EEIAEFLRSAVRGRGNILISGPTGSGKTTLL-NALLEEIPPEDERIVTIEDPPEL 167 (270)
T ss_dssp HHHHHHHHHCHHTTEEEEEEESTTSSHHHHH-HHHHHHCHTTTSEEEEEESSS-S
T ss_pred HHHHHHHhhccccceEEEEECCCccccchHH-HHHhhhccccccceEEeccccce
Confidence 334444443 355789999999999999875 5556666666 788888766665
|
These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B .... |
| >PRK09087 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.23 Score=44.27 Aligned_cols=17 Identities=29% Similarity=0.446 Sum_probs=14.9
Q ss_pred cEEEEecCCcchHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAE 90 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~ 90 (391)
.++++||+|+|||....
T Consensus 46 ~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 46 VVVLAGPVGSGKTHLAS 62 (226)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 48999999999998754
|
|
| >PRK10436 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.05 Score=53.72 Aligned_cols=48 Identities=23% Similarity=0.274 Sum_probs=32.3
Q ss_pred CCccCCCCCcHHHHHHHHHHh--cCCcEEEEecCCcchHHHHHHHHHHHHhcC
Q psy6275 50 PAREYPFVLDPFQKEAILCIE--NNQSVLVSAHTSAGKTVVAEYAIASSLKQS 100 (391)
Q Consensus 50 ~~~~~~~~~~~~Q~~~i~~i~--~~~~~li~apTGsGKT~~~~~~~~~~l~~~ 100 (391)
.+..+| +.+.|.+.+..+. .+..++++||||||||++. +.++..+...
T Consensus 196 ~L~~LG--~~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~~~~ 245 (462)
T PRK10436 196 DLETLG--MTPAQLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTLNTA 245 (462)
T ss_pred CHHHcC--cCHHHHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhhCCC
Confidence 334444 4566777776553 4567999999999999875 4555555443
|
|
| >cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP) | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.058 Score=49.35 Aligned_cols=58 Identities=22% Similarity=0.258 Sum_probs=36.4
Q ss_pred CccCCCCCcHHHHHHHHHHh--cCCcEEEEecCCcchHHHHHHHHHHHHhc-CCeEEEEcccHH
Q psy6275 51 AREYPFVLDPFQKEAILCIE--NNQSVLVSAHTSAGKTVVAEYAIASSLKQ-SQRVIYTTPIKA 111 (391)
Q Consensus 51 ~~~~~~~~~~~Q~~~i~~i~--~~~~~li~apTGsGKT~~~~~~~~~~l~~-~~~vlvl~P~~~ 111 (391)
+..+| +.+.|.+.+..+. .+..++++||||||||+.. ..++..+.. +.+++.+--..|
T Consensus 59 l~~lg--~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l-~all~~i~~~~~~iitiEdp~E 119 (264)
T cd01129 59 LEKLG--LKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTL-YSALSELNTPEKNIITVEDPVE 119 (264)
T ss_pred HHHcC--CCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHH-HHHHhhhCCCCCeEEEECCCce
Confidence 44444 4666777776553 3456899999999999875 334444443 455666543333
|
It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB. |
| >PRK09361 radB DNA repair and recombination protein RadB; Provisional | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.12 Score=45.94 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=30.8
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEccc
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPI 109 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~ 109 (391)
|.-+.+.|++|+|||...+..+.+.+..+.+++|+.-.
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 56789999999999998877777766778888888544
|
|
| >PHA00350 putative assembly protein | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.16 Score=48.90 Aligned_cols=30 Identities=20% Similarity=0.195 Sum_probs=22.3
Q ss_pred EEEEecCCcchHHHHHH-HHHHHHhcCCeEEE
Q psy6275 75 VLVSAHTSAGKTVVAEY-AIASSLKQSQRVIY 105 (391)
Q Consensus 75 ~li~apTGsGKT~~~~~-~~~~~l~~~~~vlv 105 (391)
.++.|.+|||||+.++. -++..++.+ |.++
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk~G-R~V~ 34 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALKDG-RKVI 34 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHHCC-CEEE
Confidence 57899999999998765 466666666 4444
|
|
| >COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.081 Score=47.99 Aligned_cols=21 Identities=29% Similarity=0.325 Sum_probs=16.9
Q ss_pred CcEEEEecCCcchHHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~ 93 (391)
.++++.||+|.|||+.+.+.+
T Consensus 53 DHvLl~GPPGlGKTTLA~IIA 73 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAHIIA 73 (332)
T ss_pred CeEEeeCCCCCcHHHHHHHHH
Confidence 479999999999998754443
|
|
| >cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.096 Score=46.53 Aligned_cols=97 Identities=11% Similarity=0.071 Sum_probs=53.2
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcC------CeEEEEcccHHHHH-HHHHHHHHhcccceeeeCCcccCCCCCEE
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQS------QRVIYTTPIKALSN-QKYREFEEQFKDVGLITGDVTINPSSSCL 143 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~------~~vlvl~P~~~L~~-q~~~~~~~~~~~v~~~~g~~~~~~~~~I~ 143 (391)
.|+-+.+.||+|+|||...+..+......+ .+++|+......-. .+.+..+....... .. ..++.
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~------~~--~~~i~ 89 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPE------EV--LDNIY 89 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccchh------hh--hccEE
Confidence 356789999999999998776666655555 78888876443211 11111111111100 00 01233
Q ss_pred E---EcHHHHHHHHhcCcc--ccCccceEEEeccccc
Q psy6275 144 I---MTTEILRNMLYRGSE--ITREVGWVIFDEIHYM 175 (391)
Q Consensus 144 v---~Tp~~l~~~l~~~~~--~l~~~~~lViDE~h~~ 175 (391)
+ .+++.+...+..... .-..++++|||-+-.+
T Consensus 90 ~~~~~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l 126 (226)
T cd01393 90 VARPYNGEQQLEIVEELERIMSSGRVDLVVVDSVAAL 126 (226)
T ss_pred EEeCCCHHHHHHHHHHHHHHhhcCCeeEEEEcCcchh
Confidence 2 345555544433211 1347889999998765
|
RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB. |
| >TIGR00767 rho transcription termination factor Rho | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.023 Score=54.51 Aligned_cols=28 Identities=39% Similarity=0.477 Sum_probs=21.1
Q ss_pred HhcCCcEEEEecCCcchHHHHHHHHHHHH
Q psy6275 69 IENNQSVLVSAHTSAGKTVVAEYAIASSL 97 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~~~~~~~~l 97 (391)
+-.|+.++++||+|+|||..... +.+.+
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL~~~-i~~~I 192 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVLLQK-IAQAI 192 (415)
T ss_pred eCCCCEEEEECCCCCChhHHHHH-HHHhh
Confidence 35688999999999999986444 44443
|
Members of this family differ in the specificity of RNA binding. |
| >PRK07471 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.12 Score=49.48 Aligned_cols=125 Identities=12% Similarity=0.034 Sum_probs=58.1
Q ss_pred cEEEEecCCcchHHHHHHHHHHHHhcCC----------eEEEEcccHHHHHHHHHHHHHhcc-cceeeeCCccc---CCC
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASSLKQSQ----------RVIYTTPIKALSNQKYREFEEQFK-DVGLITGDVTI---NPS 139 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~l~~~~----------~vlvl~P~~~L~~q~~~~~~~~~~-~v~~~~g~~~~---~~~ 139 (391)
-.++.||.|+||+..+...+...+..+. ..+-+++.-.- ...+..... ++..+.-.... ...
T Consensus 43 A~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~----c~~i~~~~HPDl~~i~~~~~~~~~~~~ 118 (365)
T PRK07471 43 AWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPV----ARRIAAGAHGGLLTLERSWNEKGKRLR 118 (365)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChH----HHHHHccCCCCeEEEeccccccccccc
Confidence 4899999999999887666555543221 11111222111 111211111 33222211000 112
Q ss_pred CCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEcccC
Q psy6275 140 SSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATI 204 (391)
Q Consensus 140 ~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 204 (391)
..|.|-..-.+.+.+... .......++||||+|.|.... ...+-..+...+....+|++|..+
T Consensus 119 ~~I~VdqiR~l~~~~~~~-~~~~~~kVviIDead~m~~~a-anaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 119 TVITVDEVRELISFFGLT-AAEGGWRVVIVDTADEMNANA-ANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred ccccHHHHHHHHHHhCcC-cccCCCEEEEEechHhcCHHH-HHHHHHHHhcCCCCeEEEEEECCc
Confidence 345444333344444332 234578899999999884321 112223333333445555555443
|
|
| >PRK05896 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.06 Score=54.53 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=18.7
Q ss_pred CcEEEEecCCcchHHHHHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASS 96 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~ 96 (391)
+.++++||.|+|||..+...+...
T Consensus 39 hA~Lf~GP~GvGKTTlA~~lAk~L 62 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAKIFAKAI 62 (605)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999876655444
|
|
| >PRK13531 regulatory ATPase RavA; Provisional | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.084 Score=51.99 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=20.9
Q ss_pred HHHhcCCcEEEEecCCcchHHHHHH
Q psy6275 67 LCIENNQSVLVSAHTSAGKTVVAEY 91 (391)
Q Consensus 67 ~~i~~~~~~li~apTGsGKT~~~~~ 91 (391)
-.+..+.++++.||+|+|||..+-.
T Consensus 34 ~aalag~hVLL~GpPGTGKT~LAra 58 (498)
T PRK13531 34 LAALSGESVFLLGPPGIAKSLIARR 58 (498)
T ss_pred HHHccCCCEEEECCCChhHHHHHHH
Confidence 3457899999999999999997633
|
|
| >PRK00440 rfc replication factor C small subunit; Reviewed | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.33 Score=45.45 Aligned_cols=20 Identities=25% Similarity=0.253 Sum_probs=16.5
Q ss_pred cEEEEecCCcchHHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~ 93 (391)
++++.||+|+|||.+.....
T Consensus 40 ~~ll~G~~G~GKt~~~~~l~ 59 (319)
T PRK00440 40 HLLFAGPPGTGKTTAALALA 59 (319)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 59999999999998765443
|
|
| >PRK09111 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.17 Score=51.67 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=18.9
Q ss_pred CcEEEEecCCcchHHHHHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASS 96 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~ 96 (391)
+.++++||.|+|||..+.+.+...
T Consensus 47 ha~L~~Gp~GvGKTt~Ar~lAk~L 70 (598)
T PRK09111 47 QAFMLTGVRGVGKTTTARILARAL 70 (598)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhh
Confidence 358999999999999876655443
|
|
| >PRK14964 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.042 Score=54.52 Aligned_cols=22 Identities=32% Similarity=0.382 Sum_probs=17.8
Q ss_pred CcEEEEecCCcchHHHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIA 94 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~ 94 (391)
+.++++||.|+|||.++.+.+.
T Consensus 36 ha~Lf~Gp~G~GKTT~ArilAk 57 (491)
T PRK14964 36 QSILLVGASGVGKTTCARIISL 57 (491)
T ss_pred ceEEEECCCCccHHHHHHHHHH
Confidence 4699999999999998755543
|
|
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.51 Score=46.01 Aligned_cols=122 Identities=18% Similarity=0.238 Sum_probs=60.2
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHH-hcC-Ce-EEEEccc-HHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSL-KQS-QR-VIYTTPI-KALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTT 147 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l-~~~-~~-vlvl~P~-~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp 147 (391)
++.+.++||||+|||+.....+...+ ..+ .+ .++...+ |.-+.++...+.+..+ +.+ ..+-++
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilG-vp~------------~~v~~~ 257 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLG-VSV------------RSIKDI 257 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcC-Cce------------ecCCCH
Confidence 55688999999999998644333322 222 23 3444444 3333333444444432 111 112234
Q ss_pred HHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHh----CCCCcEEEEcccCCChHHHHHHh
Q psy6275 148 EILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILL----SDNVRFVFLSATIPNASQFAQWV 214 (391)
Q Consensus 148 ~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~----~~~~~~i~~SAT~~~~~~~~~~l 214 (391)
..+...+. .+++.+.+++|.+-+.. +...+..-+..+ .....++.+|||... .++.+.+
T Consensus 258 ~dl~~al~----~l~~~d~VLIDTaGrsq---rd~~~~~~l~~l~~~~~~~~~~LVl~at~~~-~~~~~~~ 320 (420)
T PRK14721 258 ADLQLMLH----ELRGKHMVLIDTVGMSQ---RDQMLAEQIAMLSQCGTQVKHLLLLNATSSG-DTLDEVI 320 (420)
T ss_pred HHHHHHHH----HhcCCCEEEecCCCCCc---chHHHHHHHHHHhccCCCceEEEEEcCCCCH-HHHHHHH
Confidence 44333332 25678999999975431 111121222222 223456779999743 3344433
|
|
| >PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.17 Score=49.40 Aligned_cols=34 Identities=15% Similarity=0.227 Sum_probs=27.8
Q ss_pred CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHH
Q psy6275 58 LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEY 91 (391)
Q Consensus 58 ~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~ 91 (391)
+.......+..+..++++++.||+|+|||..+..
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~~ 213 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVARR 213 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHH
Confidence 5556666777788899999999999999988743
|
|
| >PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.03 Score=55.78 Aligned_cols=55 Identities=24% Similarity=0.138 Sum_probs=43.7
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhccccee
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGL 129 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~ 129 (391)
.++++.||||||||..+++|.+ +..+..++|.-|..+|...+...+++.+.+|.+
T Consensus 45 ~h~lvig~tgSGKt~~~viP~l--l~~~~s~iV~D~KgEl~~~t~~~r~~~G~~V~v 99 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNL--LNYPGSMIVTDPKGELYEKTAGYRKKRGYKVYV 99 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHH--HhccCCEEEEECCCcHHHHHHHHHHHCCCEEEE
Confidence 4799999999999999988865 334568999999999998887777766654443
|
These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane |
| >PRK14952 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.1 Score=53.02 Aligned_cols=22 Identities=32% Similarity=0.232 Sum_probs=17.5
Q ss_pred EEEEecCCcchHHHHHHHHHHH
Q psy6275 75 VLVSAHTSAGKTVVAEYAIASS 96 (391)
Q Consensus 75 ~li~apTGsGKT~~~~~~~~~~ 96 (391)
++++||.|+|||.++...+...
T Consensus 38 ~Lf~Gp~G~GKTt~A~~lAk~l 59 (584)
T PRK14952 38 YLFSGPRGCGKTSSARILARSL 59 (584)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999876655443
|
|
| >PRK14957 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.17 Score=51.05 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=17.3
Q ss_pred cEEEEecCCcchHHHHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIAS 95 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~ 95 (391)
.++++||.|+|||..+...+..
T Consensus 40 a~Lf~Gp~GvGKTTlAr~lAk~ 61 (546)
T PRK14957 40 AYLFTGTRGVGKTTLGRLLAKC 61 (546)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999987655533
|
|
| >PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.14 Score=52.09 Aligned_cols=70 Identities=16% Similarity=0.268 Sum_probs=54.7
Q ss_pred CCCcHHHHHHHHHHhcC--CcEEEEecCCcchHHHHHHHHHHHHh-cCCeEEEEcccHHHHHHHH-HHHHHhcc
Q psy6275 56 FVLDPFQKEAILCIENN--QSVLVSAHTSAGKTVVAEYAIASSLK-QSQRVIYTTPIKALSNQKY-REFEEQFK 125 (391)
Q Consensus 56 ~~~~~~Q~~~i~~i~~~--~~~li~apTGsGKT~~~~~~~~~~l~-~~~~vlvl~P~~~L~~q~~-~~~~~~~~ 125 (391)
...+|+|.+....+... +.+.+..++-+|||.+.+..+...+. .+..++++.||.+++.+.. .++..+..
T Consensus 15 ~~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P~~~l~v~Pt~~~a~~~~~~rl~Pmi~ 88 (557)
T PF05876_consen 15 TDRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQDPGPMLYVQPTDDAAKDFSKERLDPMIR 88 (557)
T ss_pred CCCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeCCCCEEEEEEcHHHHHHHHHHHHHHHHH
Confidence 35889999999988654 57999999999999976555544443 3578999999999999887 55666554
|
The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities []. |
| >PRK07764 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.12 Score=54.66 Aligned_cols=23 Identities=30% Similarity=0.238 Sum_probs=18.5
Q ss_pred cEEEEecCCcchHHHHHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASS 96 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~ 96 (391)
-+|++||.|+|||.++.+.....
T Consensus 39 a~Lf~Gp~G~GKTt~A~~lAr~L 61 (824)
T PRK07764 39 AYLFSGPRGCGKTSSARILARSL 61 (824)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 37999999999999876665444
|
|
| >KOG0739|consensus | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.43 Score=43.67 Aligned_cols=79 Identities=15% Similarity=0.201 Sum_probs=47.5
Q ss_pred HHHhcCC-----cEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCC
Q psy6275 67 LCIENNQ-----SVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSS 141 (391)
Q Consensus 67 ~~i~~~~-----~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~ 141 (391)
|.+..|+ -+++.||+|+||+..+-.-+-.+ + ...+-+.+..|+..|.-+-.++.
T Consensus 156 PqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA---n-STFFSvSSSDLvSKWmGESEkLV----------------- 214 (439)
T KOG0739|consen 156 PQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA---N-STFFSVSSSDLVSKWMGESEKLV----------------- 214 (439)
T ss_pred hhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc---C-CceEEeehHHHHHHHhccHHHHH-----------------
Confidence 4555553 48999999999997643322221 3 56666777888776643322221
Q ss_pred EEEEcHHHHHHHHhcCccccCccceEEEecccccCc
Q psy6275 142 CLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRD 177 (391)
Q Consensus 142 I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~ 177 (391)
..|+.+..+ ..-+.+.|||+|.+..
T Consensus 215 ------knLFemARe-----~kPSIIFiDEiDslcg 239 (439)
T KOG0739|consen 215 ------KNLFEMARE-----NKPSIIFIDEIDSLCG 239 (439)
T ss_pred ------HHHHHHHHh-----cCCcEEEeehhhhhcc
Confidence 122222222 2567899999998754
|
|
| >PRK08506 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.22 Score=49.55 Aligned_cols=133 Identities=17% Similarity=0.200 Sum_probs=71.4
Q ss_pred hcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccce---eeeCCccc----------
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVG---LITGDVTI---------- 136 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~---~~~g~~~~---------- 136 (391)
..|.-+++.|.||.|||...+-.+.+....+..|+++.. ..-..|+..++-.....+. +..|....
T Consensus 190 ~~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSl-EMs~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~~~~~~a~ 268 (472)
T PRK08506 190 NKGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSL-EMPAEQLMLRMLSAKTSIPLQNLRTGDLDDDEWERLSDAC 268 (472)
T ss_pred CCCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeC-cCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHH
Confidence 456678999999999999887777776666777887743 2334444444433222111 11121110
Q ss_pred --CCCCCEEE-----EcHHHHHHHHhcCccccCccceEEEecccccCcccc----chhHHHHHHHh-----CCCCcEEEE
Q psy6275 137 --NPSSSCLI-----MTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKER----GYVWEETLILL-----SDNVRFVFL 200 (391)
Q Consensus 137 --~~~~~I~v-----~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~----~~~~~~i~~~~-----~~~~~~i~~ 200 (391)
-.+..+.| .|+..+...+.+-......++++|||=.+.|...+. ...+..+.+.+ ..++.++++
T Consensus 269 ~~l~~~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~~~~~~~~r~~ev~~isr~LK~lAkel~ipVi~l 348 (472)
T PRK08506 269 DELSKKKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSGSGNFKDRHLQISEISRGLKLLARELDIPIIAL 348 (472)
T ss_pred HHHHcCCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 01223433 245555443332111123589999999998853221 11233333332 246778887
Q ss_pred ccc
Q psy6275 201 SAT 203 (391)
Q Consensus 201 SAT 203 (391)
|-.
T Consensus 349 sQL 351 (472)
T PRK08506 349 SQL 351 (472)
T ss_pred eec
Confidence 754
|
|
| >TIGR00678 holB DNA polymerase III, delta' subunit | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.21 Score=43.06 Aligned_cols=24 Identities=17% Similarity=0.189 Sum_probs=18.2
Q ss_pred CcEEEEecCCcchHHHHHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASS 96 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~ 96 (391)
+.+++.||+|+|||..+...+...
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~l 38 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKAL 38 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 458999999999998765554443
|
At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau. |
| >PRK06904 replicative DNA helicase; Validated | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.33 Score=48.29 Aligned_cols=134 Identities=19% Similarity=0.186 Sum_probs=70.6
Q ss_pred HhcCCcEEEEecCCcchHHHHHHHHHHHH-hcCCeEEEEcccHHHHHHHHHHHHHhcccc---eeeeC-Ccc--------
Q psy6275 69 IENNQSVLVSAHTSAGKTVVAEYAIASSL-KQSQRVIYTTPIKALSNQKYREFEEQFKDV---GLITG-DVT-------- 135 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~~~~~~~~l-~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v---~~~~g-~~~-------- 135 (391)
+..|.-+++.|.||.|||..++-.+.+.. ..+..|+++.. .--..|+..++-.....+ .+..| ...
T Consensus 218 l~~G~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSl-EMs~~ql~~Rlla~~s~v~~~~i~~g~~l~~~e~~~~~ 296 (472)
T PRK06904 218 LQPSDLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSL-EMPAEQIMMRMLASLSRVDQTKIRTGQNLDQQDWAKIS 296 (472)
T ss_pred cCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEec-cCCHHHHHHHHHHhhCCCCHHHhccCCCCCHHHHHHHH
Confidence 45567789999999999987655555543 34667777743 233344444443333211 11222 111
Q ss_pred -----cCCCCCEEE-----EcHHHHHHHHhcCccccCccceEEEecccccCcccc----chhHHHHHHHh-----CCCCc
Q psy6275 136 -----INPSSSCLI-----MTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKER----GYVWEETLILL-----SDNVR 196 (391)
Q Consensus 136 -----~~~~~~I~v-----~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~----~~~~~~i~~~~-----~~~~~ 196 (391)
.....++.| .|+..+.....+....-..++++|||=.+.+...+. ...+..+.+.+ ..++.
T Consensus 297 ~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lAkel~ip 376 (472)
T PRK06904 297 STVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRAPGFEDNRTLEIAEISRSLKALAKELKVP 376 (472)
T ss_pred HHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHhCCe
Confidence 111233544 355555443322111112589999999998853322 22233444333 23677
Q ss_pred EEEEccc
Q psy6275 197 FVFLSAT 203 (391)
Q Consensus 197 ~i~~SAT 203 (391)
++++|--
T Consensus 377 Vi~lsQL 383 (472)
T PRK06904 377 VVALSQL 383 (472)
T ss_pred EEEEEec
Confidence 8887743
|
|
| >PRK07940 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.19 Score=48.71 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=18.2
Q ss_pred CcEEEEecCCcchHHHHHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASS 96 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~ 96 (391)
+.+++.||.|+|||..+...+...
T Consensus 37 ha~Lf~Gp~G~GKt~lA~~lA~~l 60 (394)
T PRK07940 37 HAWLFTGPPGSGRSVAARAFAAAL 60 (394)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHh
Confidence 348999999999998765554443
|
|
| >TIGR00596 rad1 DNA repair protein (rad1) | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.12 Score=54.57 Aligned_cols=68 Identities=9% Similarity=-0.044 Sum_probs=53.0
Q ss_pred CCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEcccCCC
Q psy6275 139 SSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPN 206 (391)
Q Consensus 139 ~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 206 (391)
+..|+++||..+..-+-.+...+..+..+|+||||++.+......+..+.+.-.+..-+.+||+.+..
T Consensus 7 ~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~~ 74 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPEA 74 (814)
T ss_pred cCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCcc
Confidence 46799999999887777888889999999999999986544333444444444556779999999875
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit |
| >PRK08699 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.34 Score=45.69 Aligned_cols=39 Identities=26% Similarity=0.377 Sum_probs=28.4
Q ss_pred cHHHHHHHHHHhc--C---CcEEEEecCCcchHHHHHHHHHHHH
Q psy6275 59 DPFQKEAILCIEN--N---QSVLVSAHTSAGKTVVAEYAIASSL 97 (391)
Q Consensus 59 ~~~Q~~~i~~i~~--~---~~~li~apTGsGKT~~~~~~~~~~l 97 (391)
+|||...+..+.. + +..++.||.|.|||..+...+...+
T Consensus 3 yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~ll 46 (325)
T PRK08699 3 YPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQALL 46 (325)
T ss_pred CCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHHc
Confidence 5888888877642 2 3588999999999988765554433
|
|
| >PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.32 Score=51.16 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=18.0
Q ss_pred CCcEEEEecCCcchHHHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~ 93 (391)
..|+++.||+|+|||..+....
T Consensus 207 ~~n~LLvGppGvGKT~lae~la 228 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEGLA 228 (758)
T ss_pred CCCeEEECCCCCCHHHHHHHHH
Confidence 4689999999999999864443
|
|
| >TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.27 Score=48.28 Aligned_cols=39 Identities=18% Similarity=0.337 Sum_probs=29.7
Q ss_pred HhcCCcEEEEecCCcchHHHHHHHHHHHH-hcCCeEEEEc
Q psy6275 69 IENNQSVLVSAHTSAGKTVVAEYAIASSL-KQSQRVIYTT 107 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~~~~~~~~l-~~~~~vlvl~ 107 (391)
+..|.-+++.|+||+|||...+..+.+.. ..+..|+|+.
T Consensus 191 ~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fS 230 (421)
T TIGR03600 191 LVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFS 230 (421)
T ss_pred CCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 34567789999999999988766665543 5677888885
|
Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model. |
| >cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.03 Score=54.32 Aligned_cols=54 Identities=20% Similarity=0.014 Sum_probs=41.8
Q ss_pred cEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhccccee
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGL 129 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~ 129 (391)
++++.||||||||..+++|-+. ..+..++|+-|.-++...+....+..+..|.+
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll--~~~~s~vv~D~Kge~~~~t~~~r~~~G~~V~v 54 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLL--TWPGSVVVLDPKGENFELTSEHRRALGRKVFV 54 (384)
T ss_pred CeeEecCCCCCCccEEEccchh--cCCCCEEEEccchhHHHHHHHHHHHcCCeEEE
Confidence 5789999999999998877544 34688999999999998877666655444443
|
These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence. |
| >KOG2004|consensus | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.18 Score=51.35 Aligned_cols=114 Identities=18% Similarity=0.204 Sum_probs=69.0
Q ss_pred CccCCCCCcHHHHHHHHHH--------hcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHH
Q psy6275 51 AREYPFVLDPFQKEAILCI--------ENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEE 122 (391)
Q Consensus 51 ~~~~~~~~~~~Q~~~i~~i--------~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~ 122 (391)
|.+-.|.+-++-.+.++.+ ..|+-+.++||+|.|||-+.-.. ... +.+
T Consensus 409 LdeDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSI-A~A-----------------------LnR 464 (906)
T KOG2004|consen 409 LDEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSI-ARA-----------------------LNR 464 (906)
T ss_pred hcccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHH-HHH-----------------------hCC
Confidence 3344455777777777755 24566889999999999764221 122 222
Q ss_pred hcc--cceeeeCCcccCCCCCEEEE-cHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHh
Q psy6275 123 QFK--DVGLITGDVTINPSSSCLIM-TTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILL 191 (391)
Q Consensus 123 ~~~--~v~~~~g~~~~~~~~~I~v~-Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~ 191 (391)
.+- .+|-++.-..+....+-.|+ -|+++.+.+.+... .=-++.+||+|.+.....|.--..++..+
T Consensus 465 kFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t---~NPliLiDEvDKlG~g~qGDPasALLElL 533 (906)
T KOG2004|consen 465 KFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKT---ENPLILIDEVDKLGSGHQGDPASALLELL 533 (906)
T ss_pred ceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhCC---CCceEEeehhhhhCCCCCCChHHHHHHhc
Confidence 221 23333333334444455554 49999998876443 22389999999997555565555666655
|
|
| >PRK04328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.096 Score=47.48 Aligned_cols=53 Identities=17% Similarity=0.261 Sum_probs=39.0
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhc
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQF 124 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~ 124 (391)
.|..+++.|++|+|||...+..+.+.+.++.+++|+. +.+-..++.+.++.+.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis-~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA-LEEHPVQVRRNMRQFG 74 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE-eeCCHHHHHHHHHHcC
Confidence 4567899999999999987777777777888888886 4444455555555543
|
|
| >PRK06964 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.26 Score=46.70 Aligned_cols=39 Identities=18% Similarity=0.256 Sum_probs=28.2
Q ss_pred cHHHHHHHHHHhc--C---CcEEEEecCCcchHHHHHHHHHHHH
Q psy6275 59 DPFQKEAILCIEN--N---QSVLVSAHTSAGKTVVAEYAIASSL 97 (391)
Q Consensus 59 ~~~Q~~~i~~i~~--~---~~~li~apTGsGKT~~~~~~~~~~l 97 (391)
+|||...+..+.. + +-+++.||.|.||+..+...+...+
T Consensus 3 yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~Ll 46 (342)
T PRK06964 3 YPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQGLL 46 (342)
T ss_pred CcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHHHHc
Confidence 5788888876642 2 3588999999999988765554443
|
|
| >COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.29 E-value=1.6 Score=40.75 Aligned_cols=122 Identities=15% Similarity=0.206 Sum_probs=72.9
Q ss_pred cEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcc--cHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHH-HH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTP--IKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTE-IL 150 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P--~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~-~l 150 (391)
.++++|-.|+|||++..-.+.....++.+|++.+- .|+-+.++...|.+.. .+.++.+. ...+ |. ..
T Consensus 141 Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~-gv~vI~~~--~G~D-------pAaVa 210 (340)
T COG0552 141 VILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERL-GVPVISGK--EGAD-------PAAVA 210 (340)
T ss_pred EEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHh-CCeEEccC--CCCC-------cHHHH
Confidence 47899999999999876666556667888888763 4777777766666655 33334432 1111 22 22
Q ss_pred HHHHhcCccccCccceEEEecccccCcc-ccchhHHHHHHHhCCCC------cEEEEcccCCCh
Q psy6275 151 RNMLYRGSEITREVGWVIFDEIHYMRDK-ERGYVWEETLILLSDNV------RFVFLSATIPNA 207 (391)
Q Consensus 151 ~~~l~~~~~~l~~~~~lViDE~h~~~~~-~~~~~~~~i~~~~~~~~------~~i~~SAT~~~~ 207 (391)
++.+.... -++++++++|=|-+|-.. +.-..++.+.+-..+.. -++.+=||..+.
T Consensus 211 fDAi~~Ak--ar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqn 272 (340)
T COG0552 211 FDAIQAAK--ARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQN 272 (340)
T ss_pred HHHHHHHH--HcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChh
Confidence 23333222 348999999999988543 12223444444443322 344457887654
|
|
| >PRK06871 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.39 Score=45.22 Aligned_cols=39 Identities=13% Similarity=0.188 Sum_probs=27.4
Q ss_pred cHHHHHHHHHH----hcC---CcEEEEecCCcchHHHHHHHHHHHH
Q psy6275 59 DPFQKEAILCI----ENN---QSVLVSAHTSAGKTVVAEYAIASSL 97 (391)
Q Consensus 59 ~~~Q~~~i~~i----~~~---~~~li~apTGsGKT~~~~~~~~~~l 97 (391)
+|||...+..+ .++ +-.++.||.|.||+..+...+...+
T Consensus 4 yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~ll 49 (325)
T PRK06871 4 YPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLM 49 (325)
T ss_pred CcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHc
Confidence 47777776654 344 3578999999999988766554444
|
|
| >TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.076 Score=49.63 Aligned_cols=19 Identities=26% Similarity=0.375 Sum_probs=15.9
Q ss_pred CcEEEEecCCcchHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEY 91 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~ 91 (391)
.+++++||+|+|||..+..
T Consensus 31 ~~~ll~Gp~G~GKT~la~~ 49 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAHI 49 (305)
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 4699999999999987543
|
RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions. |
| >KOG0298|consensus | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.2 Score=53.86 Aligned_cols=133 Identities=19% Similarity=0.140 Sum_probs=83.9
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHh------------------cCCeEEEEcccHHHHHHHHHHHHHhcc---ccee
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLK------------------QSQRVIYTTPIKALSNQKYREFEEQFK---DVGL 129 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~------------------~~~~vlvl~P~~~L~~q~~~~~~~~~~---~v~~ 129 (391)
.|+.++++-..|.|||..-+...+..+. ..+-.||++| .++..||..++.+-.. ++-.
T Consensus 373 ~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P-~aIl~QW~~EI~kH~~~~lKv~~ 451 (1394)
T KOG0298|consen 373 HGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICP-NAILMQWFEEIHKHISSLLKVLL 451 (1394)
T ss_pred CCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECc-HHHHHHHHHHHHHhccccceEEE
Confidence 4567888899999999987655544331 1356899999 5677899988888766 2333
Q ss_pred eeCCccc-------CCCCCEEEEcHHHHHHHHhcC--cc----------------ccCccc--eEEEecccccCccccch
Q psy6275 130 ITGDVTI-------NPSSSCLIMTTEILRNMLYRG--SE----------------ITREVG--WVIFDEIHYMRDKERGY 182 (391)
Q Consensus 130 ~~g~~~~-------~~~~~I~v~Tp~~l~~~l~~~--~~----------------~l~~~~--~lViDE~h~~~~~~~~~ 182 (391)
.-|-... --+++|+++|+..|..-+... .. +|-.+. -+++|||+.+... ..
T Consensus 452 Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMvess--sS 529 (1394)
T KOG0298|consen 452 YFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVESS--SS 529 (1394)
T ss_pred EechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcch--HH
Confidence 3331111 126899999999988655422 00 111111 4899999987542 44
Q ss_pred hHHHHHHHhCCCCcEEEEcccCCCh
Q psy6275 183 VWEETLILLSDNVRFVFLSATIPNA 207 (391)
Q Consensus 183 ~~~~i~~~~~~~~~~i~~SAT~~~~ 207 (391)
........++. ...-+.|+||-..
T Consensus 530 ~~a~M~~rL~~-in~W~VTGTPiq~ 553 (1394)
T KOG0298|consen 530 AAAEMVRRLHA-INRWCVTGTPIQK 553 (1394)
T ss_pred HHHHHHHHhhh-hceeeecCCchhh
Confidence 44455555553 4456789996443
|
|
| >KOG1513|consensus | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.083 Score=54.06 Aligned_cols=145 Identities=21% Similarity=0.215 Sum_probs=89.8
Q ss_pred CcHHHHHHHHHHh--------cCC--cEEEEecCCcchHHHH-HHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc-
Q psy6275 58 LDPFQKEAILCIE--------NNQ--SVLVSAHTSAGKTVVA-EYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK- 125 (391)
Q Consensus 58 ~~~~Q~~~i~~i~--------~~~--~~li~apTGsGKT~~~-~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~- 125 (391)
+...|-+++-... +|. -+++--.-|.||-.+. -+..-..++...++|++.=+..|--+..+.++....
T Consensus 265 lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkGRKrAlW~SVSsDLKfDAERDL~DigA~ 344 (1300)
T KOG1513|consen 265 LSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKGRKRALWFSVSSDLKFDAERDLRDIGAT 344 (1300)
T ss_pred hhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcccceeEEEEeccccccchhhchhhcCCC
Confidence 7889999886432 222 2566666677775543 233344566678999999988898888888887765
Q ss_pred c----------ceeeeCCcccCCCCCEEEEcHHHHHHHHh---------------cCccccCccceEEEecccccCc---
Q psy6275 126 D----------VGLITGDVTINPSSSCLIMTTEILRNMLY---------------RGSEITREVGWVIFDEIHYMRD--- 177 (391)
Q Consensus 126 ~----------v~~~~g~~~~~~~~~I~v~Tp~~l~~~l~---------------~~~~~l~~~~~lViDE~h~~~~--- 177 (391)
. .+.+.++..-+-+.-++++|+..|...-. ..... --+++|+||||..-.
T Consensus 345 ~I~V~alnK~KYakIss~en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~--feGvIvfDECHkAKNL~p 422 (1300)
T KOG1513|consen 345 GIAVHALNKFKYAKISSKENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGED--FEGVIVFDECHKAKNLVP 422 (1300)
T ss_pred CccceehhhcccccccccccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhc--cceeEEehhhhhhccccc
Confidence 1 12233333333355699999876553221 11111 125899999997422
Q ss_pred ------cccchhHHHHHHHhCCCCcEEEEcccCC
Q psy6275 178 ------KERGYVWEETLILLSDNVRFVFLSATIP 205 (391)
Q Consensus 178 ------~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 205 (391)
...|..+-.+-..+| +.+++..|||=.
T Consensus 423 ~~~~k~TKtG~tVLdLQk~LP-~ARVVYASATGA 455 (1300)
T KOG1513|consen 423 TAGAKSTKTGKTVLDLQKKLP-NARVVYASATGA 455 (1300)
T ss_pred ccCCCcCcccHhHHHHHHhCC-CceEEEeeccCC
Confidence 113444555556665 588999999943
|
|
| >TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.15 Score=52.49 Aligned_cols=55 Identities=25% Similarity=0.280 Sum_probs=44.3
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHH--HHHHHHHHHHHhcc
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKA--LSNQKYREFEEQFK 125 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~--L~~q~~~~~~~~~~ 125 (391)
..+++++.|+||+|||..+...+.+.+..+..++++=|-.. |...+....+..+.
T Consensus 175 ~~~H~lv~G~TGsGKT~l~~~l~~q~i~~g~~viv~DpKgD~~l~~~~~~~~~~~G~ 231 (634)
T TIGR03743 175 RVGHTLVLGTTGVGKTRLAELLITQDIRRGDVVIVIDPKGDADLKRRMRAEAKRAGR 231 (634)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCchHHHHHHHHHHHHhCC
Confidence 35789999999999999887777778888888999989864 77777766666654
|
Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains. |
| >PRK09376 rho transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.064 Score=51.35 Aligned_cols=37 Identities=35% Similarity=0.381 Sum_probs=24.6
Q ss_pred HHHHHHHHH---HhcCCcEEEEecCCcchHHHHHHHHHHHH
Q psy6275 60 PFQKEAILC---IENNQSVLVSAHTSAGKTVVAEYAIASSL 97 (391)
Q Consensus 60 ~~Q~~~i~~---i~~~~~~li~apTGsGKT~~~~~~~~~~l 97 (391)
+.=.++|.. +-.|+..+|.||.|+|||..... +...+
T Consensus 154 ~~~~rvID~l~PIGkGQR~lIvgppGvGKTTLaK~-Ian~I 193 (416)
T PRK09376 154 DLSTRIIDLIAPIGKGQRGLIVAPPKAGKTVLLQN-IANSI 193 (416)
T ss_pred ccceeeeeeecccccCceEEEeCCCCCChhHHHHH-HHHHH
Confidence 333444443 35688999999999999976533 33433
|
|
| >PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.12 Score=48.94 Aligned_cols=21 Identities=29% Similarity=0.347 Sum_probs=17.1
Q ss_pred CcEEEEecCCcchHHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~ 93 (391)
.++++.||+|+|||..+...+
T Consensus 52 ~~~ll~GppG~GKT~la~~ia 72 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANIIA 72 (328)
T ss_pred CcEEEECCCCccHHHHHHHHH
Confidence 579999999999998765443
|
|
| >PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2 | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.11 Score=44.12 Aligned_cols=38 Identities=21% Similarity=0.151 Sum_probs=28.3
Q ss_pred cEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKA 111 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~ 111 (391)
-+.+.-..|-|||++++--+++.+..+.+|+++.=.+.
T Consensus 5 ~i~vytG~GKGKTTAAlGlalRA~G~G~rV~ivQFlKg 42 (172)
T PF02572_consen 5 LIQVYTGDGKGKTTAALGLALRAAGHGMRVLIVQFLKG 42 (172)
T ss_dssp -EEEEESSSS-HHHHHHHHHHHHHCTT--EEEEESS--
T ss_pred EEEEEeCCCCCchHHHHHHHHHHHhCCCEEEEEEEecC
Confidence 46678888999999999999999999999999976665
|
5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.15 Score=52.17 Aligned_cols=37 Identities=16% Similarity=0.257 Sum_probs=24.8
Q ss_pred HhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEE
Q psy6275 69 IENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIY 105 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlv 105 (391)
+..|+.+-++||||||||+..-+...-.-...+++++
T Consensus 352 i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~i 388 (567)
T COG1132 352 IEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILI 388 (567)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEE
Confidence 5678889999999999988643332211123566766
|
|
| >TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.32 Score=51.37 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=19.4
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASS 96 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~ 96 (391)
..|+++.||+|+|||..+-..+...
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~la~~~ 227 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEGLALRI 227 (731)
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999865544443
|
|
| >TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.11 Score=53.06 Aligned_cols=47 Identities=32% Similarity=0.361 Sum_probs=31.8
Q ss_pred CCccCCCCCcHHHHHHHHHHh--cCCcEEEEecCCcchHHHHHHHHHHHHhc
Q psy6275 50 PAREYPFVLDPFQKEAILCIE--NNQSVLVSAHTSAGKTVVAEYAIASSLKQ 99 (391)
Q Consensus 50 ~~~~~~~~~~~~Q~~~i~~i~--~~~~~li~apTGsGKT~~~~~~~~~~l~~ 99 (391)
.+.++|| .+.|.+.+..+. ....++++||||||||++. ..++..+..
T Consensus 294 ~l~~lg~--~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~~~~ 342 (564)
T TIGR02538 294 DIDKLGF--EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNILNT 342 (564)
T ss_pred CHHHcCC--CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHhhCC
Confidence 3445554 566777776553 3567899999999999884 555566543
|
This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems. |
| >TIGR00763 lon ATP-dependent protease La | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.29 Score=52.03 Aligned_cols=21 Identities=14% Similarity=0.186 Sum_probs=16.8
Q ss_pred CCcEEEEecCCcchHHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~ 92 (391)
+..+++.||+|+|||..+...
T Consensus 347 ~~~lll~GppG~GKT~lAk~i 367 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLGKSI 367 (775)
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 457999999999999875433
|
This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock. |
| >TIGR01650 PD_CobS cobaltochelatase, CobS subunit | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.45 Score=44.59 Aligned_cols=38 Identities=21% Similarity=0.326 Sum_probs=25.9
Q ss_pred CCCCcHHHHHHH-HHHhcCCcEEEEecCCcchHHHHHHH
Q psy6275 55 PFVLDPFQKEAI-LCIENNQSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 55 ~~~~~~~Q~~~i-~~i~~~~~~li~apTGsGKT~~~~~~ 92 (391)
+|.+.+--.+++ -.+..++++++.||+|+|||......
T Consensus 46 ~y~f~~~~~~~vl~~l~~~~~ilL~G~pGtGKTtla~~l 84 (327)
T TIGR01650 46 AYLFDKATTKAICAGFAYDRRVMVQGYHGTGKSTHIEQI 84 (327)
T ss_pred CccCCHHHHHHHHHHHhcCCcEEEEeCCCChHHHHHHHH
Confidence 444554444433 34567889999999999999875433
|
This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model. |
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.084 Score=49.49 Aligned_cols=43 Identities=19% Similarity=0.427 Sum_probs=29.7
Q ss_pred HhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHH
Q psy6275 69 IENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKAL 112 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L 112 (391)
+..+.+++++||||||||+.. ..++..+....+++++-...++
T Consensus 141 v~~~~~ili~G~tGsGKTTll-~al~~~~~~~~~iv~ied~~El 183 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTFL-KSLVDEIPKDERIITIEDTREI 183 (308)
T ss_pred hhCCCEEEEECCCCCCHHHHH-HHHHccCCccccEEEEcCcccc
Confidence 457889999999999999864 3344555555666666444443
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.056 Score=49.40 Aligned_cols=27 Identities=22% Similarity=0.331 Sum_probs=20.7
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhc
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQ 99 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~ 99 (391)
..-+++.||||||||++ +.+++..+.+
T Consensus 125 ~GLILVTGpTGSGKSTT-lAamId~iN~ 151 (353)
T COG2805 125 RGLILVTGPTGSGKSTT-LAAMIDYINK 151 (353)
T ss_pred CceEEEeCCCCCcHHHH-HHHHHHHHhc
Confidence 44689999999999987 5556666654
|
|
| >PRK14969 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.11 Score=52.33 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=17.1
Q ss_pred cEEEEecCCcchHHHHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIAS 95 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~ 95 (391)
-++++||+|+|||+++...+..
T Consensus 40 a~Lf~Gp~G~GKTt~A~~lAk~ 61 (527)
T PRK14969 40 AYLFTGTRGVGKTTLARILAKS 61 (527)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3689999999999887555433
|
|
| >PRK06645 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.21 Score=49.95 Aligned_cols=24 Identities=21% Similarity=0.220 Sum_probs=18.9
Q ss_pred CcEEEEecCCcchHHHHHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASS 96 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~ 96 (391)
+.++++||.|+|||.++.+.+...
T Consensus 44 ~a~Lf~Gp~G~GKTT~ArilAk~L 67 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARIIAKAV 67 (507)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 369999999999999876555443
|
|
| >PRK14951 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.13 Score=52.55 Aligned_cols=22 Identities=27% Similarity=0.292 Sum_probs=17.5
Q ss_pred EEEEecCCcchHHHHHHHHHHH
Q psy6275 75 VLVSAHTSAGKTVVAEYAIASS 96 (391)
Q Consensus 75 ~li~apTGsGKT~~~~~~~~~~ 96 (391)
++++||.|+|||.++.+.+...
T Consensus 41 ~Lf~Gp~GvGKTtlAr~lAk~L 62 (618)
T PRK14951 41 YLFTGTRGVGKTTVSRILAKSL 62 (618)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6999999999999876654443
|
|
| >PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response [] | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.11 Score=48.68 Aligned_cols=88 Identities=20% Similarity=0.187 Sum_probs=51.9
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHH---
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTE--- 148 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~--- 148 (391)
|+-+-+.||+|+|||..++..+.+....+..++++-+..+|-......+-- ++ .+++|..|+
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID~e~~ld~~~a~~lGv---dl------------~rllv~~P~~~E 117 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFIDAEHALDPEYAESLGV---DL------------DRLLVVQPDTGE 117 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEESSS---HHHHHHTT-----G------------GGEEEEE-SSHH
T ss_pred CceEEEeCCCCCchhhhHHHHHHhhhcccceeEEecCcccchhhHHHhcCc---cc------------cceEEecCCcHH
Confidence 456779999999999988877776667789999999988886665443321 11 145666553
Q ss_pred HHHHHHhcCccccCccceEEEeccccc
Q psy6275 149 ILRNMLYRGSEITREVGWVIFDEIHYM 175 (391)
Q Consensus 149 ~l~~~l~~~~~~l~~~~~lViDE~h~~ 175 (391)
..++....- ..-..++++|+|=+-.+
T Consensus 118 ~al~~~e~l-irsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 118 QALWIAEQL-IRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp HHHHHHHHH-HHTTSESEEEEE-CTT-
T ss_pred HHHHHHHHH-hhcccccEEEEecCccc
Confidence 222222111 11235789999977654
|
In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A .... |
| >PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.14 Score=46.05 Aligned_cols=75 Identities=12% Similarity=0.089 Sum_probs=55.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhcc---cceeeeCCc-cc--------CCCCCEEEEcHHHHHHHHhcCccccCccceE
Q psy6275 100 SQRVIYTTPIKALSNQKYREFEEQFK---DVGLITGDV-TI--------NPSSSCLIMTTEILRNMLYRGSEITREVGWV 167 (391)
Q Consensus 100 ~~~vlvl~P~~~L~~q~~~~~~~~~~---~v~~~~g~~-~~--------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~l 167 (391)
.+.+||++.+--=+.++.+.++.+.+ .+..+.... .+ ....+|.||||+|+..++..+...+..+.+|
T Consensus 126 sP~~lvvs~SalRa~dl~R~l~~~~~k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l~~i 205 (252)
T PF14617_consen 126 SPHVLVVSSSALRAADLIRALRSFKGKDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNLKRI 205 (252)
T ss_pred CCEEEEEcchHHHHHHHHHHHHhhccCCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccCeEE
Confidence 46888888887778888888887742 222222211 11 2357899999999999999888889999999
Q ss_pred EEecccc
Q psy6275 168 IFDEIHY 174 (391)
Q Consensus 168 ViDE~h~ 174 (391)
|+|--|.
T Consensus 206 vlD~s~~ 212 (252)
T PF14617_consen 206 VLDWSYL 212 (252)
T ss_pred EEcCCcc
Confidence 9998663
|
|
| >PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.43 Score=45.70 Aligned_cols=106 Identities=18% Similarity=0.232 Sum_probs=61.1
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHh--cCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLK--QSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEI 149 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~--~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~ 149 (391)
.+.+.+.|+.|+|||...-+.. +.+. ...|+ ...+-+.++.+.+.... |. .+- -..
T Consensus 62 ~~GlYl~G~vG~GKT~Lmd~f~-~~lp~~~k~R~----HFh~Fm~~vh~~l~~~~-------~~------~~~----l~~ 119 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTMLMDLFY-DSLPIKRKRRV----HFHEFMLDVHSRLHQLR-------GQ------DDP----LPQ 119 (362)
T ss_pred CceEEEECCCCCchhHHHHHHH-HhCCccccccc----cccHHHHHHHHHHHHHh-------CC------Ccc----HHH
Confidence 4678999999999998653332 2221 12222 44567777777776654 10 000 011
Q ss_pred HHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHh-CCCCcEEEEcccCCC
Q psy6275 150 LRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILL-SDNVRFVFLSATIPN 206 (391)
Q Consensus 150 l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~-~~~~~~i~~SAT~~~ 206 (391)
+...+ .+...+|.+||+|.- |-+....+..++..+ ..+.-+|+.|-+.|+
T Consensus 120 va~~l------~~~~~lLcfDEF~V~-DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~ 170 (362)
T PF03969_consen 120 VADEL------AKESRLLCFDEFQVT-DIADAMILKRLFEALFKRGVVLVATSNRPPE 170 (362)
T ss_pred HHHHH------HhcCCEEEEeeeecc-chhHHHHHHHHHHHHHHCCCEEEecCCCChH
Confidence 11222 346779999999953 333344455555543 556777777777764
|
AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding |
| >PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.067 Score=51.83 Aligned_cols=49 Identities=22% Similarity=0.356 Sum_probs=33.3
Q ss_pred hcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHH
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYR 118 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~ 118 (391)
...+++++.|.||||||.+....+-+...++.+++|.-|.-+.....++
T Consensus 13 ~e~~~~li~G~~GsGKT~~i~~ll~~~~~~g~~~iI~D~kg~~~~~f~~ 61 (386)
T PF10412_consen 13 SENRHILIIGATGSGKTQAIRHLLDQIRARGDRAIIYDPKGEFTERFYR 61 (386)
T ss_dssp GGGG-EEEEE-TTSSHHHHHHHHHHHHHHTT-EEEEEEETTHHHHHH--
T ss_pred hhhCcEEEECCCCCCHHHHHHHHHHHHHHcCCEEEEEECCchHHHHhcC
Confidence 4568999999999999986544444455677888888888887666554
|
It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A. |
| >PRK07004 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.3 Score=48.42 Aligned_cols=133 Identities=18% Similarity=0.149 Sum_probs=67.3
Q ss_pred hcCCcEEEEecCCcchHHHHHHHHHHH-HhcCCeEEEEcccHHHHHHHHHHHHHhcccce---eeeCCccc---------
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEYAIASS-LKQSQRVIYTTPIKALSNQKYREFEEQFKDVG---LITGDVTI--------- 136 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~~~~~~-l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~---~~~g~~~~--------- 136 (391)
..|.-+++.|.||+|||..++-.+.+. +..+..++++.. .--..|+..++-.....+. +..|....
T Consensus 211 ~~g~liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSl-EM~~~ql~~R~la~~~~v~~~~i~~g~l~~~e~~~~~~a 289 (460)
T PRK07004 211 HGGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSM-EMPGTQLAMRMLGSVGRLDQHRMRTGRLTDEDWPKLTHA 289 (460)
T ss_pred CCCceEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeC-CCCHHHHHHHHHHhhcCCCHHHHhcCCCCHHHHHHHHHH
Confidence 456778999999999998776555543 345667777742 2222333333322111110 11121110
Q ss_pred ---CCCCCEEE-----EcHHHHHHHHhcCccccCccceEEEecccccCccc----cchhHHHHHHHhC-----CCCcEEE
Q psy6275 137 ---NPSSSCLI-----MTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKE----RGYVWEETLILLS-----DNVRFVF 199 (391)
Q Consensus 137 ---~~~~~I~v-----~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~----~~~~~~~i~~~~~-----~~~~~i~ 199 (391)
-.+.++.| .|+..+.....+-......+++||||=.+.+.... +...+..+.+.+. .++.+++
T Consensus 290 ~~~l~~~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~~~~~~~~r~~ei~~Isr~LK~lAkel~ipVi~ 369 (460)
T PRK07004 290 VQKMSEAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMSGSSQGENRATEISEISRSLKSLAKELDVPVIA 369 (460)
T ss_pred HHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhccCCCCCCcHHHHHHHHHHHHHHHHHHhCCeEEE
Confidence 01234544 34444443332211112358999999999885322 1112334444332 3677877
Q ss_pred Eccc
Q psy6275 200 LSAT 203 (391)
Q Consensus 200 ~SAT 203 (391)
+|--
T Consensus 370 lsQL 373 (460)
T PRK07004 370 LSQL 373 (460)
T ss_pred Eecc
Confidence 7754
|
|
| >PRK07399 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.36 Score=45.30 Aligned_cols=60 Identities=12% Similarity=0.167 Sum_probs=32.5
Q ss_pred CEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEccc
Q psy6275 141 SCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSAT 203 (391)
Q Consensus 141 ~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 203 (391)
.|-|-....+.+.+...+ .....+++|||++|.|... -...+-..+..-+ +..+|+.|..
T Consensus 103 ~I~id~ir~i~~~l~~~p-~~~~~kVvII~~ae~m~~~-aaNaLLK~LEEPp-~~~fILi~~~ 162 (314)
T PRK07399 103 QIRLEQIREIKRFLSRPP-LEAPRKVVVIEDAETMNEA-AANALLKTLEEPG-NGTLILIAPS 162 (314)
T ss_pred cCcHHHHHHHHHHHccCc-ccCCceEEEEEchhhcCHH-HHHHHHHHHhCCC-CCeEEEEECC
Confidence 344444444555554433 3468999999999998532 1222333344334 5555555443
|
|
| >COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.086 Score=49.42 Aligned_cols=55 Identities=22% Similarity=0.364 Sum_probs=42.4
Q ss_pred CcHHHHHHHH-HHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHH
Q psy6275 58 LDPFQKEAIL-CIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALS 113 (391)
Q Consensus 58 ~~~~Q~~~i~-~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~ 113 (391)
+.+.|..-+. ++..+++++++|+||||||.. +.+++..+....+++.+=-+.++.
T Consensus 128 ~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~-lnall~~Ip~~~rivtIEdt~E~~ 183 (312)
T COG0630 128 ISPEQAAYLWLAIEARKSIIICGGTASGKTTL-LNALLDFIPPEERIVTIEDTPELK 183 (312)
T ss_pred CCHHHHHHHHHHHHcCCcEEEECCCCCCHHHH-HHHHHHhCCchhcEEEEecccccc
Confidence 6666666554 456789999999999999976 677777777788888886666653
|
|
| >PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.095 Score=46.75 Aligned_cols=44 Identities=20% Similarity=0.314 Sum_probs=35.6
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHH-hcCCeEEEEcccHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSL-KQSQRVIYTTPIKALSNQ 115 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l-~~~~~vlvl~P~~~L~~q 115 (391)
++++.|.|.||||||......+.+.+ ..+..++|+=|.-+-..-
T Consensus 23 ~~H~~I~G~TGsGKS~~~~~ll~~l~~~~~~~~ii~D~~GEY~~~ 67 (229)
T PF01935_consen 23 NRHIAIFGTTGSGKSNTVKVLLEELLKKKGAKVIIFDPHGEYASL 67 (229)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEcCCCcchhh
Confidence 46899999999999998777776776 778899999887665443
|
It contains several conserved aspartates and histidines that could be metal ligands. |
| >PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.17 Score=43.70 Aligned_cols=54 Identities=20% Similarity=0.284 Sum_probs=35.2
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHh----------cCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLK----------QSQRVIYTTPIKALSNQKYREFEEQFK 125 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~----------~~~~vlvl~P~~~L~~q~~~~~~~~~~ 125 (391)
.|.-+++.||+|+|||...+..+..... .+.+|+|+..... ..++..++.....
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~~ 94 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALLQ 94 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHHT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHhc
Confidence 5677999999999999987665555543 4568888866544 4566666665543
|
|
| >KOG0742|consensus | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.11 Score=49.52 Aligned_cols=17 Identities=29% Similarity=0.483 Sum_probs=15.5
Q ss_pred CcEEEEecCCcchHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVA 89 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~ 89 (391)
+|++..||+|+|||..+
T Consensus 385 RNilfyGPPGTGKTm~A 401 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFA 401 (630)
T ss_pred hheeeeCCCCCCchHHH
Confidence 78999999999999874
|
|
| >PRK10865 protein disaggregation chaperone; Provisional | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.59 Score=50.16 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=18.7
Q ss_pred CCcEEEEecCCcchHHHHHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIAS 95 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~ 95 (391)
..|.++.||+|+|||......+..
T Consensus 199 ~~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 199 KNNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred cCceEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999986544433
|
|
| >PRK05748 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.41 Score=47.47 Aligned_cols=134 Identities=19% Similarity=0.167 Sum_probs=69.6
Q ss_pred hcCCcEEEEecCCcchHHHHHHHHHHHH-hcCCeEEEEcccHHHHHHHHHHHHHhcccce---eeeCCccc---------
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEYAIASSL-KQSQRVIYTTPIKALSNQKYREFEEQFKDVG---LITGDVTI--------- 136 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~~~~~~l-~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~---~~~g~~~~--------- 136 (391)
..|.-+++.|+||+|||...+-.+.+.. ..+..++++. ...-..|+..++-.....+. +..|....
T Consensus 201 ~~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fS-lEms~~~l~~R~l~~~~~v~~~~i~~~~l~~~e~~~~~~a 279 (448)
T PRK05748 201 QPNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFS-LEMGAESLVMRMLCAEGNIDAQRLRTGQLTDDDWPKLTIA 279 (448)
T ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEe-CCCCHHHHHHHHHHHhcCCCHHHhhcCCCCHHHHHHHHHH
Confidence 4456789999999999988776666644 3466777764 33334444444432222111 11121110
Q ss_pred ---CCCCCEEE-----EcHHHHHHHHhcCccccCccceEEEecccccCcccc-----chhHHHHHHHh-----CCCCcEE
Q psy6275 137 ---NPSSSCLI-----MTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKER-----GYVWEETLILL-----SDNVRFV 198 (391)
Q Consensus 137 ---~~~~~I~v-----~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~-----~~~~~~i~~~~-----~~~~~~i 198 (391)
-.+.++.| .|++.+...+.+-......++++|||=.+.+..... ...+..+.+.+ ..++.++
T Consensus 280 ~~~l~~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~~~~~~~~~r~~~i~~i~~~LK~lAke~~i~vi 359 (448)
T PRK05748 280 MGSLSDAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQGSGRSGENRQQEVSEISRSLKALAKELKVPVI 359 (448)
T ss_pred HHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcCCCCCCCcCHHHHHHHHHHHHHHHHHHhCCeEE
Confidence 01223443 244544443322111112689999999998842211 12233343333 2457788
Q ss_pred EEcccC
Q psy6275 199 FLSATI 204 (391)
Q Consensus 199 ~~SAT~ 204 (391)
++|-.-
T Consensus 360 ~lsQln 365 (448)
T PRK05748 360 ALSQLS 365 (448)
T ss_pred EecccC
Confidence 777654
|
|
| >TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.1 Score=47.63 Aligned_cols=38 Identities=13% Similarity=0.276 Sum_probs=31.4
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcc
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTP 108 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P 108 (391)
.|.-+++.|++|+|||...+..+.+.+.++.+++|+.-
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~ 72 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTV 72 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 45678999999999999887777777777889999873
|
This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles. |
| >COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.34 Score=43.33 Aligned_cols=47 Identities=28% Similarity=0.392 Sum_probs=32.0
Q ss_pred HHhcCC-cEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHH
Q psy6275 68 CIENNQ-SVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQ 115 (391)
Q Consensus 68 ~i~~~~-~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q 115 (391)
.+..++ -+.++|+-|||||...- ++...+..+..++++.|...+..+
T Consensus 46 ~i~d~qg~~~vtGevGsGKTv~~R-al~~s~~~d~~~~v~i~~~~~s~~ 93 (269)
T COG3267 46 AIADGQGILAVTGEVGSGKTVLRR-ALLASLNEDQVAVVVIDKPTLSDA 93 (269)
T ss_pred HHhcCCceEEEEecCCCchhHHHH-HHHHhcCCCceEEEEecCcchhHH
Confidence 345555 68899999999999876 666666666666655555444433
|
|
| >TIGR00665 DnaB replicative DNA helicase | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.41 Score=47.23 Aligned_cols=132 Identities=21% Similarity=0.197 Sum_probs=67.8
Q ss_pred hcCCcEEEEecCCcchHHHHHHHHHHHH-hcCCeEEEEcccHHHHHHHHHHHHHhcccce---eeeCCccc---------
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEYAIASSL-KQSQRVIYTTPIKALSNQKYREFEEQFKDVG---LITGDVTI--------- 136 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~~~~~~l-~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~---~~~g~~~~--------- 136 (391)
..|.-+++.|+||+|||...+-.+.+.. ..+..++++.. ..-..|+..++......+. +..|....
T Consensus 193 ~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~Sl-Em~~~~i~~R~~~~~~~v~~~~~~~g~l~~~~~~~~~~a 271 (434)
T TIGR00665 193 QPSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSL-EMSAEQLAMRMLSSESRVDSQKLRTGKLSDEDWEKLTSA 271 (434)
T ss_pred CCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeC-cCCHHHHHHHHHHHhcCCCHHHhccCCCCHHHHHHHHHH
Confidence 4566789999999999988766666544 34667777753 2233333333333322111 11111110
Q ss_pred ---CCCCCEEE-----EcHHHHHHHHhcCccccCccceEEEecccccCcccc----chhHHHHHHHh-----CCCCcEEE
Q psy6275 137 ---NPSSSCLI-----MTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKER----GYVWEETLILL-----SDNVRFVF 199 (391)
Q Consensus 137 ---~~~~~I~v-----~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~----~~~~~~i~~~~-----~~~~~~i~ 199 (391)
-.+..+.| .|.+.+...+..-... ..++++|||=.+.+..... ...+..+.+.+ ..++.+++
T Consensus 272 ~~~l~~~~l~i~d~~~~~~~~i~~~i~~~~~~-~~~~~vvID~l~~i~~~~~~~~r~~~i~~i~~~Lk~lA~e~~i~vi~ 350 (434)
T TIGR00665 272 AGKLSEAPLYIDDTPGLTITELRAKARRLKRE-HGLGLIVIDYLQLMSGSGRSENRQQEVSEISRSLKALAKELNVPVIA 350 (434)
T ss_pred HHHHhcCCEEEECCCCCCHHHHHHHHHHHHHh-cCCCEEEEcchHhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEE
Confidence 01123333 2445554433321111 2489999999998743221 12233333333 24677777
Q ss_pred Eccc
Q psy6275 200 LSAT 203 (391)
Q Consensus 200 ~SAT 203 (391)
+|-.
T Consensus 351 lsql 354 (434)
T TIGR00665 351 LSQL 354 (434)
T ss_pred Eecc
Confidence 7754
|
This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites. |
| >cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.068 Score=52.27 Aligned_cols=47 Identities=19% Similarity=0.229 Sum_probs=35.7
Q ss_pred hcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHH
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQK 116 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~ 116 (391)
...+++++.|+||+|||......+...+..+.+++|+-|..++....
T Consensus 40 ~~~~h~~i~g~tGsGKt~~i~~l~~~~~~~~~~~vi~D~kg~~~~~~ 86 (410)
T cd01127 40 AEEAHTMIIGTTGTGKTTQIRELLASIRARGDRAIIYDPNGGFVSKF 86 (410)
T ss_pred hhhccEEEEcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcchhHhh
Confidence 44679999999999999875333444455678999999998876554
|
TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria. |
| >TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.42 Score=51.34 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=18.6
Q ss_pred CCcEEEEecCCcchHHHHHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIAS 95 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~ 95 (391)
..|.++.||+|+|||...-..+..
T Consensus 194 ~~n~lL~G~pGvGKT~l~~~la~~ 217 (852)
T TIGR03346 194 KNNPVLIGEPGVGKTAIVEGLAQR 217 (852)
T ss_pred CCceEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999886544333
|
Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.17 Score=51.22 Aligned_cols=21 Identities=14% Similarity=0.332 Sum_probs=18.3
Q ss_pred HhcCCcEEEEecCCcchHHHH
Q psy6275 69 IENNQSVLVSAHTSAGKTVVA 89 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~ 89 (391)
+..|+.+.++||+|||||+..
T Consensus 358 i~~G~~vaIvG~SGsGKSTLl 378 (529)
T TIGR02868 358 LPPGERVAILGPSGSGKSTLL 378 (529)
T ss_pred EcCCCEEEEECCCCCCHHHHH
Confidence 467899999999999999864
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.21 Score=46.62 Aligned_cols=67 Identities=27% Similarity=0.332 Sum_probs=49.9
Q ss_pred CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcC--CeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcc
Q psy6275 58 LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQS--QRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVT 135 (391)
Q Consensus 58 ~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~--~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~ 135 (391)
-++-|..=+.++.+..-++..||-|+|||..+.......+..+ .+++..=|-. +.+.+.+++-|+..
T Consensus 129 kt~~Q~~y~eai~~~di~fGiGpAGTGKTyLava~av~al~~~~v~rIiLtRPaV-----------EAGEklGfLPGdl~ 197 (348)
T COG1702 129 KTPGQNMYPEAIEEHDIVFGIGPAGTGKTYLAVAKAVDALGAGQVRRIILTRPAV-----------EAGEKLGFLPGDLR 197 (348)
T ss_pred cChhHHHHHHHHHhcCeeeeecccccCChhhhHHhHhhhhhhcccceeeecCcch-----------hcCcccCcCCCchh
Confidence 7899999999999988899999999999998877777777554 4666655622 22335566666655
|
|
| >PRK14959 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.21 Score=50.95 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=18.7
Q ss_pred CcEEEEecCCcchHHHHHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASS 96 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~ 96 (391)
..+|++||.|+|||.++.+.+-..
T Consensus 39 ha~Lf~GPpG~GKTtiArilAk~L 62 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARIFAKAL 62 (624)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhc
Confidence 358899999999999876655443
|
|
| >TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.14 Score=48.70 Aligned_cols=55 Identities=20% Similarity=0.294 Sum_probs=39.4
Q ss_pred CcHHHHHHHHHH-hcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHH
Q psy6275 58 LDPFQKEAILCI-ENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALS 113 (391)
Q Consensus 58 ~~~~Q~~~i~~i-~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~ 113 (391)
+++.+.+.+..+ ..+.+++++|+||+|||... ..++..+....+++++--+.||.
T Consensus 163 ~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTll-~al~~~i~~~~riv~iEd~~El~ 218 (340)
T TIGR03819 163 FPPGVARLLRAIVAARLAFLISGGTGSGKTTLL-SALLALVAPDERIVLVEDAAELR 218 (340)
T ss_pred CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHH-HHHHccCCCCCcEEEECCcceec
Confidence 556666666654 56789999999999999764 44455556667788877777763
|
Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer. |
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.8 Score=49.44 Aligned_cols=78 Identities=17% Similarity=0.194 Sum_probs=67.4
Q ss_pred HHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc--cceeeeCCccc-----------CCCCCEEEEcHHHHHHHHhcCc
Q psy6275 92 AIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK--DVGLITGDVTI-----------NPSSSCLIMTTEILRNMLYRGS 158 (391)
Q Consensus 92 ~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~--~v~~~~g~~~~-----------~~~~~I~v~Tp~~l~~~l~~~~ 158 (391)
++++.+.+++++.|+.|..+-..++...++++.. ++++.||.+.. +.+.+|+|||. +-+..
T Consensus 795 AI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TT------IIEtG 868 (1139)
T COG1197 795 AILRELLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTT------IIETG 868 (1139)
T ss_pred HHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEee------eeecC
Confidence 4555556799999999999999999999999998 88999998773 56789999998 55667
Q ss_pred cccCccceEEEeccccc
Q psy6275 159 EITREVGWVIFDEIHYM 175 (391)
Q Consensus 159 ~~l~~~~~lViDE~h~~ 175 (391)
.++.+...+||+-||++
T Consensus 869 IDIPnANTiIIe~AD~f 885 (1139)
T COG1197 869 IDIPNANTIIIERADKF 885 (1139)
T ss_pred cCCCCCceEEEeccccc
Confidence 77889999999999987
|
|
| >TIGR02237 recomb_radB DNA repair and recombination protein RadB | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.12 Score=45.23 Aligned_cols=39 Identities=15% Similarity=0.262 Sum_probs=31.4
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEccc
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPI 109 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~ 109 (391)
.|.-+.+.||+|+|||...+..+.+....+.+++|+.-.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e 49 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTE 49 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 356789999999999998877776666677888888664
|
This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236). |
| >TIGR02533 type_II_gspE general secretory pathway protein E | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.13 Score=51.32 Aligned_cols=54 Identities=20% Similarity=0.261 Sum_probs=33.7
Q ss_pred CCccCCCCCcHHHHHHHHHHhc--CCcEEEEecCCcchHHHHHHHHHHHHhc-CCeEEEE
Q psy6275 50 PAREYPFVLDPFQKEAILCIEN--NQSVLVSAHTSAGKTVVAEYAIASSLKQ-SQRVIYT 106 (391)
Q Consensus 50 ~~~~~~~~~~~~Q~~~i~~i~~--~~~~li~apTGsGKT~~~~~~~~~~l~~-~~~vlvl 106 (391)
.+..+| +.+-|.+.+..+.. +.-++++||||||||+.. ..++..+.. +..++.+
T Consensus 220 ~l~~Lg--~~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL-~a~L~~l~~~~~~iiTi 276 (486)
T TIGR02533 220 DLETLG--MSPELLSRFERLIRRPHGIILVTGPTGSGKTTTL-YAALSRLNTPERNILTV 276 (486)
T ss_pred CHHHcC--CCHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH-HHHHhccCCCCCcEEEE
Confidence 344444 46777777776543 235789999999999875 444555543 3344444
|
This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis. |
| >cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.15 Score=47.80 Aligned_cols=89 Identities=20% Similarity=0.173 Sum_probs=56.1
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEc---HH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMT---TE 148 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~T---p~ 148 (391)
|+-+.+.||+|+|||...+..+.+....+.+++|+.+...+-.+....+ .-+. .++++.. .+
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~l---Gvd~------------~~l~v~~p~~~e 119 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKL---GVDL------------DNLLISQPDTGE 119 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHc---CCCH------------HHheecCCCCHH
Confidence 4678899999999999888777777778899999988776665433222 1111 1233333 34
Q ss_pred HHHHHHhcCccccCccceEEEecccccC
Q psy6275 149 ILRNMLYRGSEITREVGWVIFDEIHYMR 176 (391)
Q Consensus 149 ~l~~~l~~~~~~l~~~~~lViDE~h~~~ 176 (391)
.++..+..- ..-..++++|+|=+-.+.
T Consensus 120 q~l~i~~~l-i~s~~~~lIVIDSvaal~ 146 (325)
T cd00983 120 QALEIADSL-VRSGAVDLIVVDSVAALV 146 (325)
T ss_pred HHHHHHHHH-HhccCCCEEEEcchHhhc
Confidence 444433221 111368999999977553
|
RecA couples ATP hydrolysis to DNA strand exchange. |
| >TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN | Back alignment and domain information |
|---|
Probab=93.46 E-value=0.22 Score=45.47 Aligned_cols=36 Identities=17% Similarity=0.122 Sum_probs=26.0
Q ss_pred CcHHHHHHHH----HHhcCCcEEEEecCCcchHHHHHHHH
Q psy6275 58 LDPFQKEAIL----CIENNQSVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 58 ~~~~Q~~~i~----~i~~~~~~li~apTGsGKT~~~~~~~ 93 (391)
.++..++... .+..++++++.||+|+|||..+....
T Consensus 3 ~t~~~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la 42 (262)
T TIGR02640 3 ETDAVKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVA 42 (262)
T ss_pred CCHHHHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHH
Confidence 3455555444 45678999999999999999865443
|
Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728). |
| >PRK14955 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=93.46 E-value=0.33 Score=47.25 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=18.0
Q ss_pred cEEEEecCCcchHHHHHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASS 96 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~ 96 (391)
.++++||+|+|||.++...+-..
T Consensus 40 a~lf~Gp~G~GKtt~A~~~a~~l 62 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARVFAKAV 62 (397)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38899999999999876655443
|
|
| >TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ | Back alignment and domain information |
|---|
Probab=93.46 E-value=0.18 Score=48.39 Aligned_cols=36 Identities=17% Similarity=0.238 Sum_probs=24.6
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHh---cCCeEEEEc
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLK---QSQRVIYTT 107 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~---~~~~vlvl~ 107 (391)
.+..++++||||||||+.. ..++..+. .+.+++.+-
T Consensus 148 ~~GlilI~G~TGSGKTT~l-~al~~~i~~~~~~~~IvtiE 186 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLA-ASIYQHCGETYPDRKIVTYE 186 (372)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHHHhcCCCceEEEEe
Confidence 5667999999999999874 44555543 234566553
|
Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524). |
| >PRK14965 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.17 Score=51.62 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=17.2
Q ss_pred cEEEEecCCcchHHHHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIAS 95 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~ 95 (391)
.++++||.|+|||.++...+-.
T Consensus 40 ayLf~Gp~G~GKtt~A~~lak~ 61 (576)
T PRK14965 40 AFLFTGARGVGKTSTARILAKA 61 (576)
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3689999999999987554433
|
|
| >PHA02542 41 41 helicase; Provisional | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.54 Score=46.75 Aligned_cols=36 Identities=22% Similarity=0.231 Sum_probs=28.5
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEc
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTT 107 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~ 107 (391)
|.-+++.|+||.|||..++-.+.+....+..|+++.
T Consensus 190 G~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fS 225 (473)
T PHA02542 190 KTLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYIS 225 (473)
T ss_pred CcEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEe
Confidence 456889999999999988777666666677787774
|
|
| >TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family | Back alignment and domain information |
|---|
Probab=93.38 E-value=0.21 Score=44.39 Aligned_cols=54 Identities=13% Similarity=0.158 Sum_probs=40.2
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK 125 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~ 125 (391)
.+..+++.|++|+|||...+..+...+.++.+++|+.- .+-..++.+.+..+..
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~-e~~~~~l~~~~~~~~~ 68 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISL-EEREERILGYAKSKGW 68 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC-CCCHHHHHHHHHHcCC
Confidence 35678999999999998877777777777888888855 3445666666666543
|
This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself. |
| >PRK14948 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=93.38 E-value=0.21 Score=51.40 Aligned_cols=24 Identities=25% Similarity=0.220 Sum_probs=18.6
Q ss_pred CcEEEEecCCcchHHHHHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASS 96 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~ 96 (391)
..+++.||.|+|||..+...+-..
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lAk~L 62 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILAKSL 62 (620)
T ss_pred ceEEEECCCCCChHHHHHHHHHHh
Confidence 457999999999999876555443
|
|
| >PRK03992 proteasome-activating nucleotidase; Provisional | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.42 Score=46.40 Aligned_cols=21 Identities=29% Similarity=0.417 Sum_probs=17.0
Q ss_pred CCcEEEEecCCcchHHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~ 92 (391)
.+.+++.||+|+|||..+-..
T Consensus 165 p~gvLL~GppGtGKT~lAkai 185 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAKAV 185 (389)
T ss_pred CCceEEECCCCCChHHHHHHH
Confidence 357999999999999875443
|
|
| >cd01394 radB RadB | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.13 Score=45.57 Aligned_cols=36 Identities=22% Similarity=0.239 Sum_probs=29.8
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEc
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTT 107 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~ 107 (391)
|.-+++.|++|+|||...+..+......+.+++|+.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 456889999999999988777777667788999983
|
The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear. |
| >PRK13897 type IV secretion system component VirD4; Provisional | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.094 Score=53.55 Aligned_cols=56 Identities=20% Similarity=-0.069 Sum_probs=44.9
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhccccee
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGL 129 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~ 129 (391)
.+++++.||||||||..+++|.+.. -+..++|+-|.-|+...+....++.+..|.+
T Consensus 158 ~~hvLviapTgSGKg~g~VIPnLL~--~~~S~VV~DpKGEl~~~Ta~~R~~~G~~V~v 213 (606)
T PRK13897 158 FQHALLFAPTGSGKGVGFVIPNLLF--WEDSVVVHDIKLENYELTSGWREKQGQKVFV 213 (606)
T ss_pred CceEEEEcCCCCCcceEEehhhHHh--CCCCEEEEeCcHHHHHHHHHHHHHCCCeEEE
Confidence 4579999999999999998886554 3678999999999998888777665445544
|
|
| >PRK05563 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.18 Score=51.36 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=17.9
Q ss_pred CcEEEEecCCcchHHHHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIAS 95 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~ 95 (391)
+.++++||.|+|||.++-..+..
T Consensus 39 hayLf~Gp~GtGKTt~Ak~lAka 61 (559)
T PRK05563 39 HAYLFSGPRGTGKTSAAKIFAKA 61 (559)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 34788999999999987655443
|
|
| >TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau | Back alignment and domain information |
|---|
Probab=93.24 E-value=0.28 Score=46.84 Aligned_cols=20 Identities=30% Similarity=0.333 Sum_probs=16.0
Q ss_pred cEEEEecCCcchHHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~ 93 (391)
.+++.||+|+|||..+....
T Consensus 38 ~~Ll~G~~G~GKt~~a~~la 57 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIARIFA 57 (355)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999998764443
|
This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis. |
| >TIGR03689 pup_AAA proteasome ATPase | Back alignment and domain information |
|---|
Probab=93.22 E-value=0.39 Score=48.03 Aligned_cols=19 Identities=32% Similarity=0.518 Sum_probs=16.1
Q ss_pred CCcEEEEecCCcchHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAE 90 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~ 90 (391)
.+.+++.||+|+|||..+-
T Consensus 216 p~GILLyGPPGTGKT~LAK 234 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIAK 234 (512)
T ss_pred CcceEEECCCCCcHHHHHH
Confidence 4679999999999998643
|
In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity. |
| >COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.15 E-value=0.068 Score=49.20 Aligned_cols=20 Identities=30% Similarity=0.509 Sum_probs=16.6
Q ss_pred CCcEEEEecCCcchHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEY 91 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~ 91 (391)
.-|+++.||||||||+.+..
T Consensus 97 KSNILLiGPTGsGKTlLAqT 116 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQT 116 (408)
T ss_pred eccEEEECCCCCcHHHHHHH
Confidence 35799999999999987643
|
|
| >PRK08760 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=93.11 E-value=0.72 Score=46.01 Aligned_cols=132 Identities=20% Similarity=0.185 Sum_probs=68.9
Q ss_pred hcCCcEEEEecCCcchHHHHHHHHHHHH-hcCCeEEEEcccHHHHHHHHHHHHHhcccce---eeeCCccc---------
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEYAIASSL-KQSQRVIYTTPIKALSNQKYREFEEQFKDVG---LITGDVTI--------- 136 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~~~~~~l-~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~---~~~g~~~~--------- 136 (391)
..|.-+++.|.||+|||...+-.+.... ..+..|+|+.. ..-..|+..++......+. +..|....
T Consensus 227 ~~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSl-EMs~~ql~~Rl~a~~s~i~~~~i~~g~l~~~e~~~~~~a 305 (476)
T PRK08760 227 QPTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSM-EMSASQLAMRLISSNGRINAQRLRTGALEDEDWARVTGA 305 (476)
T ss_pred CCCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEec-cCCHHHHHHHHHHhhCCCcHHHHhcCCCCHHHHHHHHHH
Confidence 4566789999999999988776665543 34667777743 2223455555444332111 11121110
Q ss_pred ---CCCCCEEEE-----cHHHHHHHHhcCccccCccceEEEecccccCccc----cchhHHHHHHHhC-----CCCcEEE
Q psy6275 137 ---NPSSSCLIM-----TTEILRNMLYRGSEITREVGWVIFDEIHYMRDKE----RGYVWEETLILLS-----DNVRFVF 199 (391)
Q Consensus 137 ---~~~~~I~v~-----Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~----~~~~~~~i~~~~~-----~~~~~i~ 199 (391)
-.+..+.|- |++.+...+.+-.. -..+++||||=.+.|...+ +...+..+.+.+. .++.+++
T Consensus 306 ~~~l~~~~l~I~d~~~~t~~~I~~~~r~l~~-~~~~~lVvIDyLql~~~~~~~~~r~~ei~~Isr~LK~lAkel~ipVi~ 384 (476)
T PRK08760 306 IKMLKETKIFIDDTPGVSPEVLRSKCRRLKR-EHDLGLIVIDYLQLMSVPGNSENRATEISEISRSLKGLAKELNVPVIA 384 (476)
T ss_pred HHHHhcCCEEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEecHHhcCCCCCCcccHHHHHHHHHHHHHHHHHhCCEEEE
Confidence 011234332 45555443322111 1358999999999884222 2222334443332 3577777
Q ss_pred Eccc
Q psy6275 200 LSAT 203 (391)
Q Consensus 200 ~SAT 203 (391)
+|-.
T Consensus 385 lsQL 388 (476)
T PRK08760 385 LSQL 388 (476)
T ss_pred eecc
Confidence 7644
|
|
| >PRK10787 DNA-binding ATP-dependent protease La; Provisional | Back alignment and domain information |
|---|
Probab=93.10 E-value=0.44 Score=50.45 Aligned_cols=44 Identities=20% Similarity=0.160 Sum_probs=26.9
Q ss_pred cHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhC
Q psy6275 146 TTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLS 192 (391)
Q Consensus 146 Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~ 192 (391)
.|+.+...+..... .-.++++||+|.+.....+.....++..+.
T Consensus 402 ~~G~~~~~l~~~~~---~~~villDEidk~~~~~~g~~~~aLlevld 445 (784)
T PRK10787 402 MPGKLIQKMAKVGV---KNPLFLLDEIDKMSSDMRGDPASALLEVLD 445 (784)
T ss_pred CCcHHHHHHHhcCC---CCCEEEEEChhhcccccCCCHHHHHHHHhc
Confidence 46777666654332 224799999999876544444455555543
|
|
| >CHL00095 clpC Clp protease ATP binding subunit | Back alignment and domain information |
|---|
Probab=93.04 E-value=0.62 Score=49.89 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=19.5
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASS 96 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~ 96 (391)
..|.++.||+|+|||..+-..+...
T Consensus 200 ~~n~lL~G~pGvGKTal~~~la~~i 224 (821)
T CHL00095 200 KNNPILIGEPGVGKTAIAEGLAQRI 224 (821)
T ss_pred cCCeEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999875544443
|
|
| >KOG0741|consensus | Back alignment and domain information |
|---|
Probab=92.98 E-value=0.21 Score=49.13 Aligned_cols=17 Identities=29% Similarity=0.569 Sum_probs=15.4
Q ss_pred CcEEEEecCCcchHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVA 89 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~ 89 (391)
+-+++.||+|+|||+.+
T Consensus 257 KGiLLyGPPGTGKTLiA 273 (744)
T KOG0741|consen 257 KGILLYGPPGTGKTLIA 273 (744)
T ss_pred eeEEEECCCCCChhHHH
Confidence 56899999999999976
|
|
| >PRK07133 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=92.94 E-value=0.25 Score=51.24 Aligned_cols=22 Identities=32% Similarity=0.332 Sum_probs=17.2
Q ss_pred cEEEEecCCcchHHHHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIAS 95 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~ 95 (391)
-++++||.|+|||.++...+..
T Consensus 42 AYLF~GP~GtGKTt~AriLAk~ 63 (725)
T PRK07133 42 AYLFSGPRGTGKTSVAKIFANA 63 (725)
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 3689999999999987555433
|
|
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=92.92 E-value=0.87 Score=41.73 Aligned_cols=17 Identities=24% Similarity=0.360 Sum_probs=15.3
Q ss_pred CcEEEEecCCcchHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVA 89 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~ 89 (391)
+++++.||+|+|||+.+
T Consensus 112 ~~~~i~g~~g~GKttl~ 128 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLL 128 (270)
T ss_pred eEEEEEcCCCCCHHHHH
Confidence 68999999999999864
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >PRK08840 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=92.92 E-value=0.83 Score=45.36 Aligned_cols=134 Identities=21% Similarity=0.205 Sum_probs=67.4
Q ss_pred HhcCCcEEEEecCCcchHHHHHHHHHHHH-hcCCeEEEEcccHHHHHHHHHHHHHhcccce---eeeCCcc---------
Q psy6275 69 IENNQSVLVSAHTSAGKTVVAEYAIASSL-KQSQRVIYTTPIKALSNQKYREFEEQFKDVG---LITGDVT--------- 135 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~~~~~~~~l-~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~---~~~g~~~--------- 135 (391)
+..|.-+++.|.||.|||..++-.+.... ..+..++++..- --..|+..++-.....+. +..|...
T Consensus 214 ~~~g~LiviaarPg~GKTafalnia~~~a~~~~~~v~~fSlE-Ms~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~~~~~~ 292 (464)
T PRK08840 214 LQGSDLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLE-MPAEQLMMRMLASLSRVDQTKIRTGQLDDEDWARISS 292 (464)
T ss_pred CCCCceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEecc-CCHHHHHHHHHHhhCCCCHHHHhcCCCCHHHHHHHHH
Confidence 45567789999999999987765555543 446678777532 223444444333222110 1111111
Q ss_pred ----cCCCCCEEE-----EcHHHHHHHHhcCccccCccceEEEecccccCccc----cchhHHHHHHHh-----CCCCcE
Q psy6275 136 ----INPSSSCLI-----MTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKE----RGYVWEETLILL-----SDNVRF 197 (391)
Q Consensus 136 ----~~~~~~I~v-----~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~----~~~~~~~i~~~~-----~~~~~~ 197 (391)
...+.++.| .|...+.....+-......+++||||=.|.|...+ +...+..+.+.+ ..++.+
T Consensus 293 a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~~~~~~~~r~~ei~~isr~LK~lAkel~ipV 372 (464)
T PRK08840 293 TMGILMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDYLQLMRVPALSDNRTLEIAEISRSLKALAKELNVPV 372 (464)
T ss_pred HHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHhcCCCCCCCchHHHHHHHHHHHHHHHHHhCCeE
Confidence 001223433 23344433222211111258999999999885222 112233343333 246778
Q ss_pred EEEccc
Q psy6275 198 VFLSAT 203 (391)
Q Consensus 198 i~~SAT 203 (391)
+++|--
T Consensus 373 i~LsQL 378 (464)
T PRK08840 373 VALSQL 378 (464)
T ss_pred EEEEec
Confidence 887743
|
|
| >PRK14950 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=92.90 E-value=0.39 Score=49.24 Aligned_cols=21 Identities=24% Similarity=0.260 Sum_probs=16.8
Q ss_pred cEEEEecCCcchHHHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIA 94 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~ 94 (391)
.++++||.|+|||.++...+-
T Consensus 40 a~Lf~Gp~G~GKTtlA~~lA~ 60 (585)
T PRK14950 40 AYLFTGPRGVGKTSTARILAK 60 (585)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 468999999999998755543
|
|
| >CHL00176 ftsH cell division protein; Validated | Back alignment and domain information |
|---|
Probab=92.87 E-value=0.49 Score=48.86 Aligned_cols=20 Identities=30% Similarity=0.453 Sum_probs=16.6
Q ss_pred CcEEEEecCCcchHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~ 92 (391)
+.+++.||+|+|||..+-..
T Consensus 217 ~gVLL~GPpGTGKT~LAral 236 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAKAI 236 (638)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 46999999999999876444
|
|
| >PRK08451 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=92.84 E-value=0.46 Score=47.76 Aligned_cols=22 Identities=27% Similarity=0.196 Sum_probs=17.3
Q ss_pred EEEEecCCcchHHHHHHHHHHH
Q psy6275 75 VLVSAHTSAGKTVVAEYAIASS 96 (391)
Q Consensus 75 ~li~apTGsGKT~~~~~~~~~~ 96 (391)
.+++||.|+|||.++...+-..
T Consensus 39 yLf~Gp~G~GKTt~Ar~LAk~L 60 (535)
T PRK08451 39 YLFSGLRGSGKTSSARIFARAL 60 (535)
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 5899999999998876555443
|
|
| >TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family | Back alignment and domain information |
|---|
Probab=92.76 E-value=0.29 Score=50.04 Aligned_cols=55 Identities=27% Similarity=0.315 Sum_probs=43.9
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccH--HHHHHHHHHHHHhcc
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIK--ALSNQKYREFEEQFK 125 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~--~L~~q~~~~~~~~~~ 125 (391)
...+.++.|+||+|||......+.+.+..+..++++=|-. ++...++...+....
T Consensus 179 ~~gHtlV~GtTGsGKT~l~~~li~q~i~~g~~vi~fDpkgD~el~~~~~~~~~~~GR 235 (643)
T TIGR03754 179 RVGHTLVLGTTRVGKTRLAELLITQDIRRGDVVIVFDPKGDADLLKRMYAEAKRAGR 235 (643)
T ss_pred ccCceEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHHhCC
Confidence 3568999999999999998888888888888999999976 566666665555544
|
Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion. |
| >PRK06090 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=92.75 E-value=0.52 Score=44.26 Aligned_cols=40 Identities=13% Similarity=0.128 Sum_probs=28.2
Q ss_pred CcHHHHHHHHHH----hcCC---cEEEEecCCcchHHHHHHHHHHHH
Q psy6275 58 LDPFQKEAILCI----ENNQ---SVLVSAHTSAGKTVVAEYAIASSL 97 (391)
Q Consensus 58 ~~~~Q~~~i~~i----~~~~---~~li~apTGsGKT~~~~~~~~~~l 97 (391)
+.|||...+..+ .+++ -.++.||.|.||+..+...+...+
T Consensus 4 ~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~ll 50 (319)
T PRK06090 4 DYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALL 50 (319)
T ss_pred CcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHc
Confidence 457777777654 3443 589999999999987655554444
|
|
| >PHA00012 I assembly protein | Back alignment and domain information |
|---|
Probab=92.74 E-value=1.1 Score=41.92 Aligned_cols=29 Identities=34% Similarity=0.357 Sum_probs=24.0
Q ss_pred EEEEecCCcchHHHHHHHHHHHHhcCCeE
Q psy6275 75 VLVSAHTSAGKTVVAEYAIASSLKQSQRV 103 (391)
Q Consensus 75 ~li~apTGsGKT~~~~~~~~~~l~~~~~v 103 (391)
.++.|-+|+|||+.+..-+...+.+|.++
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~~Gr~V 32 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLVKGCIV 32 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHcCCEE
Confidence 57899999999999888888888777643
|
|
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=92.74 E-value=0.2 Score=50.11 Aligned_cols=104 Identities=13% Similarity=0.076 Sum_probs=63.8
Q ss_pred HHHHHHhc-----CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCC
Q psy6275 64 EAILCIEN-----NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINP 138 (391)
Q Consensus 64 ~~i~~i~~-----~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~ 138 (391)
..++.++. |..+++.||+|+|||+..+..+...+.++-+++|+. ..+-..|+..+...+.-+..- .-.
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s-~eEs~~~i~~~~~~lg~~~~~------~~~ 322 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFA-YEESRAQLLRNAYSWGIDFEE------MEQ 322 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE-eeCCHHHHHHHHHHcCCChHH------Hhh
Confidence 34555543 467899999999999988888877777888999886 566677777777665432110 000
Q ss_pred CCCEEE-------EcHHHHHHHHhcCccccCccceEEEeccccc
Q psy6275 139 SSSCLI-------MTTEILRNMLYRGSEITREVGWVIFDEIHYM 175 (391)
Q Consensus 139 ~~~I~v-------~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~ 175 (391)
+..+.+ ..++.++..+..... -.+.+.+|||=...+
T Consensus 323 ~g~l~~~~~~p~~~~~~~~~~~i~~~i~-~~~~~~vvIDsi~~~ 365 (484)
T TIGR02655 323 QGLLKIICAYPESAGLEDHLQIIKSEIA-DFKPARIAIDSLSAL 365 (484)
T ss_pred CCcEEEEEcccccCChHHHHHHHHHHHH-HcCCCEEEEcCHHHH
Confidence 111211 123444433332211 125679999998865
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >KOG0738|consensus | Back alignment and domain information |
|---|
Probab=92.68 E-value=0.41 Score=45.40 Aligned_cols=73 Identities=19% Similarity=0.300 Sum_probs=41.8
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILRN 152 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l~~ 152 (391)
+.+++.||+|+|||+.+-..+-+ .+...+-+....|+..+- | -.+++.+
T Consensus 246 kgvLm~GPPGTGKTlLAKAvATE----c~tTFFNVSsstltSKwR--------------G-------------eSEKlvR 294 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVATE----CGTTFFNVSSSTLTSKWR--------------G-------------ESEKLVR 294 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHHh----hcCeEEEechhhhhhhhc--------------c-------------chHHHHH
Confidence 57999999999999865332222 123344444444433221 1 1355555
Q ss_pred HHhcCccccCccceEEEecccccCc
Q psy6275 153 MLYRGSEITREVGWVIFDEIHYMRD 177 (391)
Q Consensus 153 ~l~~~~~~l~~~~~lViDE~h~~~~ 177 (391)
++..-.. +-.-..|.|||+|.+..
T Consensus 295 lLFemAR-fyAPStIFiDEIDslcs 318 (491)
T KOG0738|consen 295 LLFEMAR-FYAPSTIFIDEIDSLCS 318 (491)
T ss_pred HHHHHHH-HhCCceeehhhHHHHHh
Confidence 5443211 23567999999998853
|
|
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=92.61 E-value=0.17 Score=44.12 Aligned_cols=37 Identities=19% Similarity=0.296 Sum_probs=23.8
Q ss_pred cEEEEecCCcchHHHHHHHHHHHHhc--CCeEEEEcccHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASSLKQ--SQRVIYTTPIKA 111 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~l~~--~~~vlvl~P~~~ 111 (391)
-++++||||||||+... .++..+.. +.+++.+--..+
T Consensus 3 lilI~GptGSGKTTll~-~ll~~~~~~~~~~i~t~e~~~E 41 (198)
T cd01131 3 LVLVTGPTGSGKSTTLA-AMIDYINKNKTHHILTIEDPIE 41 (198)
T ss_pred EEEEECCCCCCHHHHHH-HHHHHhhhcCCcEEEEEcCCcc
Confidence 47899999999998753 34444432 356666644334
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=92.45 E-value=0.081 Score=47.86 Aligned_cols=28 Identities=36% Similarity=0.443 Sum_probs=20.8
Q ss_pred HhcCCcEEEEecCCcchHHHHHHHHHHHH
Q psy6275 69 IENNQSVLVSAHTSAGKTVVAEYAIASSL 97 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~~~~~~~~l 97 (391)
+..|+.+++.||.|+|||+.. -.+.+.+
T Consensus 13 i~~Gqr~~I~G~~G~GKTTLl-r~I~n~l 40 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTLL-QSIANAI 40 (249)
T ss_pred cCCCCEEEEECCCCCCHHHHH-HHHHhcc
Confidence 457899999999999999754 3344443
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=92.42 E-value=4.6 Score=34.15 Aligned_cols=20 Identities=15% Similarity=0.187 Sum_probs=16.1
Q ss_pred cEEEEecCCcchHHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~ 93 (391)
.+++.|++|+|||+.....+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~ 21 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIA 21 (174)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999765433
|
|
| >PRK13850 type IV secretion system protein VirD4; Provisional | Back alignment and domain information |
|---|
Probab=92.41 E-value=0.16 Score=52.51 Aligned_cols=55 Identities=24% Similarity=0.038 Sum_probs=42.4
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccce
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVG 128 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~ 128 (391)
.+++++.||||||||..+++|-+-. .+..++|+-|.-|+...+....++.+..|-
T Consensus 139 ~~hvlviApTgSGKgvg~VIPnLL~--~~gS~VV~DpKGE~~~~Ta~~R~~~G~~V~ 193 (670)
T PRK13850 139 QPHSLVVAPTRAGKGVGVVIPTLLT--FKGSVIALDVKGELFELTSRARKASGDAVF 193 (670)
T ss_pred CceEEEEecCCCCceeeehHhHHhc--CCCCEEEEeCCchHHHHHHHHHHhCCCEEE
Confidence 4589999999999999998886443 367899999999998887665555433343
|
|
| >PRK08006 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=92.40 E-value=1.2 Score=44.34 Aligned_cols=134 Identities=20% Similarity=0.177 Sum_probs=69.7
Q ss_pred HhcCCcEEEEecCCcchHHHHHHHHHHHH-hcCCeEEEEcccHHHHHHHHHHHHHhcccce---eeeCCcc---------
Q psy6275 69 IENNQSVLVSAHTSAGKTVVAEYAIASSL-KQSQRVIYTTPIKALSNQKYREFEEQFKDVG---LITGDVT--------- 135 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~~~~~~~~l-~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~---~~~g~~~--------- 135 (391)
+..|.-+++.|.||.|||..++-.+.+.. ..+..|+|+..- --..|+..++-.....+. +..|...
T Consensus 221 l~~G~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlE-M~~~ql~~Rlla~~~~v~~~~i~~~~l~~~e~~~~~~ 299 (471)
T PRK08006 221 LQPSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLE-MPGEQIMMRMLASLSRVDQTRIRTGQLDDEDWARISG 299 (471)
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEecc-CCHHHHHHHHHHHhcCCCHHHhhcCCCCHHHHHHHHH
Confidence 34567789999999999988766655543 456678777532 223344433333222111 1111111
Q ss_pred ----cCCCCCEEE-----EcHHHHHHHHhcCccccCccceEEEecccccCccc----cchhHHHHHHHh-----CCCCcE
Q psy6275 136 ----INPSSSCLI-----MTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKE----RGYVWEETLILL-----SDNVRF 197 (391)
Q Consensus 136 ----~~~~~~I~v-----~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~----~~~~~~~i~~~~-----~~~~~~ 197 (391)
...+.++.| .|+..+.....+-......+++||||=.|.+...+ +...+..+.+.+ ..++.+
T Consensus 300 a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lAkel~ipV 379 (471)
T PRK08006 300 TMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMRVPSLSDNRTLEIAEISRSLKALAKELQVPV 379 (471)
T ss_pred HHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHccCCCCCCCcHHHHHHHHHHHHHHHHHhCCeE
Confidence 002234444 24444443332211111268999999999884221 222244444433 246778
Q ss_pred EEEccc
Q psy6275 198 VFLSAT 203 (391)
Q Consensus 198 i~~SAT 203 (391)
+++|-.
T Consensus 380 i~LsQL 385 (471)
T PRK08006 380 VALSQL 385 (471)
T ss_pred EEEEec
Confidence 888744
|
|
| >cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU) | Back alignment and domain information |
|---|
Probab=92.39 E-value=0.22 Score=42.23 Aligned_cols=83 Identities=22% Similarity=0.202 Sum_probs=50.9
Q ss_pred EEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHHHHHH
Q psy6275 75 VLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILRNML 154 (391)
Q Consensus 75 ~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l~~~l 154 (391)
+++.|++|||||..+...+.. .+.+++|++-.+.+-.++.+++.+.-. ..+..=..+-.|..+.+.+
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~---~~~~~~y~at~~~~d~em~~rI~~H~~----------~R~~~w~t~E~~~~l~~~l 68 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE---LGGPVTYIATAEAFDDEMAERIARHRK----------RRPAHWRTIETPRDLVSAL 68 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh---cCCCeEEEEccCcCCHHHHHHHHHHHH----------hCCCCceEeecHHHHHHHH
Confidence 589999999999876655433 467899998888777766666554211 0111123344555555555
Q ss_pred hcCccccCccceEEEecccc
Q psy6275 155 YRGSEITREVGWVIFDEIHY 174 (391)
Q Consensus 155 ~~~~~~l~~~~~lViDE~h~ 174 (391)
.... .-+.+++|=...
T Consensus 69 ~~~~----~~~~VLIDclt~ 84 (169)
T cd00544 69 KELD----PGDVVLIDCLTL 84 (169)
T ss_pred HhcC----CCCEEEEEcHhH
Confidence 3321 345677776654
|
CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape. |
| >TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
|---|
Probab=92.38 E-value=0.8 Score=48.42 Aligned_cols=19 Identities=32% Similarity=0.497 Sum_probs=16.3
Q ss_pred CCcEEEEecCCcchHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAE 90 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~ 90 (391)
++.+++.||+|+|||..+-
T Consensus 212 ~~giLL~GppGtGKT~lar 230 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLLAK 230 (733)
T ss_pred CceEEEECCCCCChHHHHH
Confidence 4779999999999998753
|
This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. |
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=92.32 E-value=0.12 Score=35.73 Aligned_cols=18 Identities=17% Similarity=0.412 Sum_probs=15.6
Q ss_pred CCcEEEEecCCcchHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVA 89 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~ 89 (391)
+...++.||+|+|||..+
T Consensus 23 g~~tli~G~nGsGKSTll 40 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLL 40 (62)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 457999999999999874
|
|
| >KOG1001|consensus | Back alignment and domain information |
|---|
Probab=92.28 E-value=0.93 Score=46.94 Aligned_cols=134 Identities=19% Similarity=0.237 Sum_probs=78.5
Q ss_pred cEEEEecCCcchHHHHHHHHHHH-Hh--------cCCeEEEEcccHHHHHHHHHHHHHhcc----cceeeeC-Ccc--cC
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASS-LK--------QSQRVIYTTPIKALSNQKYREFEEQFK----DVGLITG-DVT--IN 137 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~-l~--------~~~~vlvl~P~~~L~~q~~~~~~~~~~----~v~~~~g-~~~--~~ 137 (391)
-.|+.-..|-|||...+..++.. .. .....|+++| -++..|+...+.+..+ .+.+.+| ... ..
T Consensus 154 ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp-~s~~~qW~~elek~~~~~~l~v~v~~gr~kd~~el 232 (674)
T KOG1001|consen 154 GGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCP-TSLLTQWKTELEKVTEEDKLSIYVYHGRTKDKSEL 232 (674)
T ss_pred cceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecc-hHHHHHHHHHHhccCCccceEEEEecccccccchh
Confidence 46888889999998765544432 21 2345677767 5666788888855444 4555666 111 12
Q ss_pred CCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEcccCCCh--HHHHHHhc
Q psy6275 138 PSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNA--SQFAQWVS 215 (391)
Q Consensus 138 ~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~--~~~~~~l~ 215 (391)
.+.+|+++||+.+.. ....--..-.+|+||+|.+...... .......+....+. .+|+|+-.. +++..+++
T Consensus 233 ~~~dVVltTy~il~~----~~l~~i~w~Riildea~~ikn~~tq--~~~a~~~L~a~~RW-cLtgtPiqn~~~~lysl~~ 305 (674)
T KOG1001|consen 233 NSYDVVLTTYDILKN----SPLVKIKWLRIVLDEAHTIKNKDTQ--IFKAVCQLDAKYRW-CLTGTPIQNNLDELYSLFK 305 (674)
T ss_pred cCCceEEeeHHHhhc----ccccceeEEEEEeccccccCCcchH--hhhhheeeccceee-eecCChhhhhHHHHHHHHH
Confidence 356799999998863 1111124557999999998654222 11222223333334 558887543 55655554
|
|
| >PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging [] | Back alignment and domain information |
|---|
Probab=92.28 E-value=1.6 Score=41.50 Aligned_cols=97 Identities=18% Similarity=0.153 Sum_probs=43.0
Q ss_pred EEEecCCcchHHHHHHHHHHH-HhcCC-eEEEEcccHHHHHHH-HH---HHHHhccc---ceee-eCCcc--cCCCCCEE
Q psy6275 76 LVSAHTSAGKTVVAEYAIASS-LKQSQ-RVIYTTPIKALSNQK-YR---EFEEQFKD---VGLI-TGDVT--INPSSSCL 143 (391)
Q Consensus 76 li~apTGsGKT~~~~~~~~~~-l~~~~-~vlvl~P~~~L~~q~-~~---~~~~~~~~---v~~~-~g~~~--~~~~~~I~ 143 (391)
++.++.|+|||......++.. +..+. +.++++|+..-+... .. ........ +... ..+.. ......|.
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nG~~i~ 80 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPPGRRVIIASTYRQARDIFGRFWKGIIELLPSWFEIKFNEWNDRKIILPNGSRIQ 80 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS--EEEEEESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE-SSEEEETTS-EEE
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCCCcEEEEecCHHHHHHHHHHhHHHHHHHHHHhcCcccccCCCCcEEecCceEEE
Confidence 478899999999876555444 34443 455555665554442 22 23333322 1111 01111 12233455
Q ss_pred EEcHHH---HHHHHhcCccccCccceEEEecccccCcc
Q psy6275 144 IMTTEI---LRNMLYRGSEITREVGWVIFDEIHYMRDK 178 (391)
Q Consensus 144 v~Tp~~---l~~~l~~~~~~l~~~~~lViDE~h~~~~~ 178 (391)
+.+.+. ...+. + ..++++++||+-.+.+.
T Consensus 81 ~~~~~~~~~~~~~~--G----~~~~~i~iDE~~~~~~~ 112 (384)
T PF03237_consen 81 FRGADSPDSGDNIR--G----FEYDLIIIDEAAKVPDD 112 (384)
T ss_dssp EES-----SHHHHH--T----S--SEEEEESGGGSTTH
T ss_pred Eecccccccccccc--c----cccceeeeeecccCchH
Confidence 555321 11111 1 37889999999877544
|
The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A. |
| >TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG | Back alignment and domain information |
|---|
Probab=92.18 E-value=0.21 Score=51.19 Aligned_cols=56 Identities=13% Similarity=0.081 Sum_probs=43.6
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhc-cccee
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQF-KDVGL 129 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~-~~v~~ 129 (391)
..++++.||||||||..+.+|- .+..+..++|+-|..|+...+....++.+ .+|-+
T Consensus 211 ~~H~lv~ApTgsGKgvg~VIPn--LL~~~gS~VV~DpKgE~~~~Ta~~R~~~Gg~~V~v 267 (623)
T TIGR02767 211 STHMIFFAGSGGFKTTSVVVPT--ALKYGGPLVCLDPSTEVAPMVCEHRRQAGNRKVIV 267 (623)
T ss_pred CceEEEEeCCCCCccceeehhh--hhcCCCCEEEEEChHHHHHHHHHHHHHcCCCcEEE
Confidence 3689999999999999998885 44457889999999999888776555554 34444
|
This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems. |
| >PRK13822 conjugal transfer coupling protein TraG; Provisional | Back alignment and domain information |
|---|
Probab=92.13 E-value=0.19 Score=51.71 Aligned_cols=56 Identities=18% Similarity=0.087 Sum_probs=43.1
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhccccee
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGL 129 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~ 129 (391)
..++++.||||+|||..+.+|.+ +..++.++|+-|..|+...+....++...+|-+
T Consensus 224 ~~H~Lv~ApTgsGKt~g~VIPnL--L~~~gS~VV~DpKgEl~~~Ta~~R~~~G~~V~v 279 (641)
T PRK13822 224 STHGLVFAGSGGFKTTSVVVPTA--LKWGGPLVVLDPSTEVAPMVSEHRRDAGREVIV 279 (641)
T ss_pred CceEEEEeCCCCCccceEehhhh--hcCCCCEEEEeCcHHHHHHHHHHHHHCCCeEEE
Confidence 46899999999999999988853 345778999999999988776655554434444
|
|
| >PRK05636 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=92.13 E-value=0.96 Score=45.41 Aligned_cols=37 Identities=22% Similarity=0.339 Sum_probs=26.1
Q ss_pred hcCCcEEEEecCCcchHHHHHHHHHHH-HhcCCeEEEE
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEYAIASS-LKQSQRVIYT 106 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~~~~~~-l~~~~~vlvl 106 (391)
..|.-+++.|.||+|||...+-.+... +..+..++++
T Consensus 263 ~~G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~f 300 (505)
T PRK05636 263 RGGQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIF 300 (505)
T ss_pred CCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEE
Confidence 345667899999999998766555443 3446677776
|
|
| >PRK09165 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=92.10 E-value=1.2 Score=44.82 Aligned_cols=106 Identities=14% Similarity=0.208 Sum_probs=55.7
Q ss_pred hcCCcEEEEecCCcchHHHHHHHHHHHHh---------------cCCeEEEEcccHHHHHHHHHHHHHhcccce---eee
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEYAIASSLK---------------QSQRVIYTTPIKALSNQKYREFEEQFKDVG---LIT 131 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~~~~~~l~---------------~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~---~~~ 131 (391)
..|.-+++.|+||+|||..++-.+.+... .+..|+|+. ...-..|+..++......+. +..
T Consensus 215 ~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fS-lEMs~~ql~~R~la~~s~v~~~~i~~ 293 (497)
T PRK09165 215 HPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFS-LEMSAEQLATRILSEQSEISSSKIRR 293 (497)
T ss_pred CCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEe-CcCCHHHHHHHHHHHhcCCCHHHHhc
Confidence 34566899999999999877655544432 245677774 33334555555433322111 111
Q ss_pred CCccc------------CCCCCEEE-----EcHHHHHHHHhcCccccCccceEEEecccccCc
Q psy6275 132 GDVTI------------NPSSSCLI-----MTTEILRNMLYRGSEITREVGWVIFDEIHYMRD 177 (391)
Q Consensus 132 g~~~~------------~~~~~I~v-----~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~ 177 (391)
|.... -.+.++.| .|++.+...+.+-.. -..+++||||=.|.+..
T Consensus 294 ~~l~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l~~-~~~~~lvvIDyLqli~~ 355 (497)
T PRK09165 294 GKISEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRLKR-QHGLDLLVVDYLQLIRG 355 (497)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhccC
Confidence 21110 01123333 244554443332111 12589999999998753
|
|
| >PRK07993 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=92.09 E-value=0.56 Score=44.44 Aligned_cols=40 Identities=10% Similarity=0.134 Sum_probs=28.3
Q ss_pred CcHHHHHHHHHH----hcCC---cEEEEecCCcchHHHHHHHHHHHH
Q psy6275 58 LDPFQKEAILCI----ENNQ---SVLVSAHTSAGKTVVAEYAIASSL 97 (391)
Q Consensus 58 ~~~~Q~~~i~~i----~~~~---~~li~apTGsGKT~~~~~~~~~~l 97 (391)
++|||...+..+ .+++ -.++.||.|.||+..+...+...+
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~Ll 49 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLM 49 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHc
Confidence 457788777755 2343 588999999999987765554443
|
|
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
Probab=92.09 E-value=0.24 Score=47.17 Aligned_cols=41 Identities=15% Similarity=0.212 Sum_probs=27.7
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhc--CCeEEEEcccHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQ--SQRVIYTTPIKAL 112 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~--~~~vlvl~P~~~L 112 (391)
.+..++++||||||||+.. ..++..+.. +.+++.+--..++
T Consensus 121 ~~g~ili~G~tGSGKTT~l-~al~~~i~~~~~~~i~tiEdp~E~ 163 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTL-ASMIDYINKNAAGHIITIEDPIEY 163 (343)
T ss_pred cCcEEEEECCCCCCHHHHH-HHHHHhhCcCCCCEEEEEcCChhh
Confidence 4678999999999999875 344444443 4566666544444
|
This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. |
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=92.03 E-value=0.56 Score=40.10 Aligned_cols=42 Identities=12% Similarity=0.237 Sum_probs=26.2
Q ss_pred CccceEEEecccccCccccchhHHHHHHHh-CCCCcEEEEccc
Q psy6275 162 REVGWVIFDEIHYMRDKERGYVWEETLILL-SDNVRFVFLSAT 203 (391)
Q Consensus 162 ~~~~~lViDE~h~~~~~~~~~~~~~i~~~~-~~~~~~i~~SAT 203 (391)
.+.+++++||...-+|......+...+..+ ..+.++++.|--
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~ 157 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLK 157 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 467899999999877654444444444443 333666666544
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH | Back alignment and domain information |
|---|
Probab=91.95 E-value=0.92 Score=45.58 Aligned_cols=20 Identities=30% Similarity=0.468 Sum_probs=16.5
Q ss_pred CcEEEEecCCcchHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~ 92 (391)
+.+++.||+|+|||..+-..
T Consensus 89 ~giLL~GppGtGKT~la~al 108 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLAKAV 108 (495)
T ss_pred CcEEEECCCCCCHHHHHHHH
Confidence 57999999999999875433
|
HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. |
| >COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=91.94 E-value=0.45 Score=49.60 Aligned_cols=66 Identities=24% Similarity=0.273 Sum_probs=53.4
Q ss_pred CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc----CCeEEEEcccHHHHHHHHHHHHHhcc
Q psy6275 58 LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ----SQRVIYTTPIKALSNQKYREFEEQFK 125 (391)
Q Consensus 58 ~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~----~~~vlvl~P~~~L~~q~~~~~~~~~~ 125 (391)
+++-|.+|+... ...++|.|+.|||||.+...=+.+.+.. ..+++.+.=|+..+.++..++....+
T Consensus 3 Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~vlt~Ria~li~~~~v~p~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 3 LNPEQREAVLHP--DGPLLVLAGAGSGKTRVLTERIAYLIAAGGVDPEQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCHHHHHHHhcC--CCCeEEEECCCCCchhhHHHHHHHHHHcCCcChHHeeeeechHHHHHHHHHHHHHHhC
Confidence 789999999764 6678999999999999876655555544 34799999999999999999888875
|
|
| >PF13479 AAA_24: AAA domain | Back alignment and domain information |
|---|
Probab=91.93 E-value=0.25 Score=43.61 Aligned_cols=78 Identities=14% Similarity=0.201 Sum_probs=47.9
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILR 151 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l~ 151 (391)
+-.++|.|++|+|||..+... ++.++|..-..... +. .......+-|.+++.+.
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~--------~k~l~id~E~g~~~-----~~-------------~~~~~~~i~i~s~~~~~ 56 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL--------PKPLFIDTENGSDS-----LK-------------FLDDGDVIPITSWEDFL 56 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC--------CCeEEEEeCCCccc-----hh-------------hhcCCCeeCcCCHHHHH
Confidence 446899999999999754322 56777644222100 00 00012234455888888
Q ss_pred HHHhcCccccCccceEEEeccccc
Q psy6275 152 NMLYRGSEITREVGWVIFDEIHYM 175 (391)
Q Consensus 152 ~~l~~~~~~l~~~~~lViDE~h~~ 175 (391)
+.+..-......++.||||-+..+
T Consensus 57 ~~~~~l~~~~~~y~tiVIDsis~~ 80 (213)
T PF13479_consen 57 EALDELEEDEADYDTIVIDSISWL 80 (213)
T ss_pred HHHHHHHhccCCCCEEEEECHHHH
Confidence 866543333568999999999876
|
|
| >COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=91.91 E-value=0.31 Score=44.67 Aligned_cols=90 Identities=13% Similarity=0.200 Sum_probs=57.1
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILR 151 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l~ 151 (391)
|.-+=+.||.|||||...+..+......+.+++|+--..+|-.+-...+..-. ..++++..|....
T Consensus 60 g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~~l~p~r~~~l~~~~--------------~d~l~v~~~~~~e 125 (279)
T COG0468 60 GRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTEHALDPERAKQLGVDL--------------LDNLLVSQPDTGE 125 (279)
T ss_pred ceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEeCCCCCCHHHHHHHHHhh--------------hcceeEecCCCHH
Confidence 34456999999999999988888888888899999776666554444433321 2346666654333
Q ss_pred HHH---hcC-ccccCccceEEEeccccc
Q psy6275 152 NML---YRG-SEITREVGWVIFDEIHYM 175 (391)
Q Consensus 152 ~~l---~~~-~~~l~~~~~lViDE~h~~ 175 (391)
+.+ ... ....+.++++|+|=+=.+
T Consensus 126 ~q~~i~~~~~~~~~~~i~LvVVDSvaa~ 153 (279)
T COG0468 126 QQLEIAEKLARSGAEKIDLLVVDSVAAL 153 (279)
T ss_pred HHHHHHHHHHHhccCCCCEEEEecCccc
Confidence 211 111 111116999999977654
|
|
| >KOG0990|consensus | Back alignment and domain information |
|---|
Probab=91.90 E-value=0.31 Score=45.02 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=24.6
Q ss_pred ccceEEEecccccCccccchhHHHHHHHhCCCCcEEEE
Q psy6275 163 EVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFL 200 (391)
Q Consensus 163 ~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~ 200 (391)
.++++|+||||.|... -...++.++.....+.+++..
T Consensus 131 ~fKlvILDEADaMT~~-AQnALRRviek~t~n~rF~ii 167 (360)
T KOG0990|consen 131 AFKLVILDEADAMTRD-AQNALRRVIEKYTANTRFATI 167 (360)
T ss_pred ceeEEEecchhHhhHH-HHHHHHHHHHHhccceEEEEe
Confidence 7899999999988432 133455566666666666643
|
|
| >PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51 | Back alignment and domain information |
|---|
Probab=91.88 E-value=0.47 Score=43.17 Aligned_cols=104 Identities=13% Similarity=0.256 Sum_probs=52.1
Q ss_pred HHHHHhcC-----CcEEEEecCCcchHHHHHHHHHHH-Hh-----cCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCC
Q psy6275 65 AILCIENN-----QSVLVSAHTSAGKTVVAEYAIASS-LK-----QSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGD 133 (391)
Q Consensus 65 ~i~~i~~~-----~~~li~apTGsGKT~~~~~~~~~~-l~-----~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~ 133 (391)
.++.++.| .-+=++|++|+|||...+..++.. +. .+.+++|+.-....-.+-..++.+.++ . ..+
T Consensus 26 ~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~-~---~~~ 101 (256)
T PF08423_consen 26 SLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFG-L---DPE 101 (256)
T ss_dssp HHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTT-S----HH
T ss_pred HHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccc-c---ccc
Confidence 34555543 345699999999998765544443 22 257899996443322221222222111 0 000
Q ss_pred cccCCCCCEE---EEcHHHHHHHHhcCccc--cCccceEEEeccccc
Q psy6275 134 VTINPSSSCL---IMTTEILRNMLYRGSEI--TREVGWVIFDEIHYM 175 (391)
Q Consensus 134 ~~~~~~~~I~---v~Tp~~l~~~l~~~~~~--l~~~~~lViDE~h~~ 175 (391)
... .+|. +.+.+.+...+..-... -.++++||||-+-.+
T Consensus 102 ~~l---~~I~v~~~~~~~~l~~~L~~l~~~l~~~~ikLIVIDSIaal 145 (256)
T PF08423_consen 102 EIL---DNIFVIRVFDLEELLELLEQLPKLLSESKIKLIVIDSIAAL 145 (256)
T ss_dssp HHH---HTEEEEE-SSHHHHHHHHHHHHHHHHHSCEEEEEEETSSHH
T ss_pred hhh---hceeeeecCCHHHHHHHHHHHHhhccccceEEEEecchHHH
Confidence 000 1222 23445555444332111 147999999998765
|
It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D .... |
| >PRK09519 recA DNA recombination protein RecA; Reviewed | Back alignment and domain information |
|---|
Probab=91.86 E-value=0.5 Score=49.57 Aligned_cols=89 Identities=18% Similarity=0.138 Sum_probs=56.1
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcH---H
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTT---E 148 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp---~ 148 (391)
|.-+.+.||+|+|||...+..+......+.+++|+.....+....++ .+.-+. .++++..| +
T Consensus 60 GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~---~lGvDl------------~~llv~~~~~~E 124 (790)
T PRK09519 60 GRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAK---KLGVDT------------DSLLVSQPDTGE 124 (790)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHH---HcCCCh------------hHeEEecCCCHH
Confidence 46688999999999998877777777788999999877766644322 221111 12233333 3
Q ss_pred HHHHHHhcCccccCccceEEEecccccC
Q psy6275 149 ILRNMLYRGSEITREVGWVIFDEIHYMR 176 (391)
Q Consensus 149 ~l~~~l~~~~~~l~~~~~lViDE~h~~~ 176 (391)
.++..+.... .-..+++||||-+-.+.
T Consensus 125 ~~l~~i~~lv-~~~~~~LVVIDSI~aL~ 151 (790)
T PRK09519 125 QALEIADMLI-RSGALDIVVIDSVAALV 151 (790)
T ss_pred HHHHHHHHHh-hcCCCeEEEEcchhhhc
Confidence 3333332211 11368999999988664
|
|
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=91.85 E-value=0.28 Score=41.56 Aligned_cols=33 Identities=21% Similarity=0.268 Sum_probs=24.3
Q ss_pred EEEEecCCcchHHHHHHHHHHHHhcCCeEEEEc
Q psy6275 75 VLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTT 107 (391)
Q Consensus 75 ~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~ 107 (391)
+++.|++|+|||......+......+.+++++.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~ 35 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVA 35 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 578999999999987655555445566776654
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >KOG1806|consensus | Back alignment and domain information |
|---|
Probab=91.85 E-value=0.35 Score=50.99 Aligned_cols=68 Identities=25% Similarity=0.194 Sum_probs=55.2
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHH--HHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhc
Q psy6275 57 VLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAE--YAIASSLKQSQRVIYTTPIKALSNQKYREFEEQF 124 (391)
Q Consensus 57 ~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~--~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~ 124 (391)
.+++-|.++|..-...+.+.+.||+|+|||-.+. +..+.+-....+.+|++.+..-.+|.++.+.+.-
T Consensus 738 ~ft~~qveai~sg~qpgltmvvgppgtgktd~avqil~~lyhn~p~qrTlivthsnqaln~lfeKi~~~d 807 (1320)
T KOG1806|consen 738 KFTPTQVEAILSGMQPGLTMVVGPPGTGKTDVAVQILSVLYHNSPNQRTLIVTHSNQALNQLFEKIMALD 807 (1320)
T ss_pred ccCHHHHHHHHhcCCCCceeeecCCCCCCcchhhhhhhhhhhcCCCcceEEEEecccchhHHHHHHHhcc
Confidence 5899999999887888899999999999998763 3344444567899999999888888888776653
|
|
| >COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.83 E-value=0.67 Score=40.97 Aligned_cols=19 Identities=26% Similarity=0.359 Sum_probs=15.7
Q ss_pred cCC-cEEEEecCCcchHHHH
Q psy6275 71 NNQ-SVLVSAHTSAGKTVVA 89 (391)
Q Consensus 71 ~~~-~~li~apTGsGKT~~~ 89 (391)
++. |.++.||+|+|||+..
T Consensus 135 ~g~lntLiigpP~~GKTTlL 154 (308)
T COG3854 135 NGWLNTLIIGPPQVGKTTLL 154 (308)
T ss_pred cCceeeEEecCCCCChHHHH
Confidence 444 5999999999999864
|
|
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=91.80 E-value=0.32 Score=48.66 Aligned_cols=54 Identities=15% Similarity=0.124 Sum_probs=40.6
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhc-CCeEEEEcccHHHHHHHHHHHHHhcc
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQ-SQRVIYTTPIKALSNQKYREFEEQFK 125 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~-~~~vlvl~P~~~L~~q~~~~~~~~~~ 125 (391)
.|..+++.||+|+|||+.++..+.+.+.+ +-+++|+.- .+-..++.+.+..+..
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~-eE~~~~l~~~~~~~G~ 74 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTF-EESPQDIIKNARSFGW 74 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEE-ecCHHHHHHHHHHcCC
Confidence 46789999999999999888777776665 678888864 4555666666666554
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >TIGR00602 rad24 checkpoint protein rad24 | Back alignment and domain information |
|---|
Probab=91.75 E-value=0.82 Score=47.04 Aligned_cols=20 Identities=15% Similarity=0.363 Sum_probs=16.0
Q ss_pred CcEEEEecCCcchHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~ 92 (391)
+-+++.||+|+|||.++-+.
T Consensus 111 ~illL~GP~GsGKTTl~~~l 130 (637)
T TIGR00602 111 RILLITGPSGCGKSTTIKIL 130 (637)
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 34899999999999975443
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK12608 transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
Probab=91.72 E-value=0.11 Score=49.54 Aligned_cols=32 Identities=25% Similarity=0.290 Sum_probs=25.7
Q ss_pred HHHHHHHHHHh---cCCcEEEEecCCcchHHHHHH
Q psy6275 60 PFQKEAILCIE---NNQSVLVSAHTSAGKTVVAEY 91 (391)
Q Consensus 60 ~~Q~~~i~~i~---~~~~~li~apTGsGKT~~~~~ 91 (391)
++-.++|+.+. .|+..+|.||.|+|||.....
T Consensus 118 ~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~ 152 (380)
T PRK12608 118 DLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQ 152 (380)
T ss_pred chhHhhhhheeecCCCceEEEECCCCCCHHHHHHH
Confidence 56667787654 688999999999999987544
|
|
| >PRK13764 ATPase; Provisional | Back alignment and domain information |
|---|
Probab=91.69 E-value=0.3 Score=49.75 Aligned_cols=42 Identities=21% Similarity=0.361 Sum_probs=27.6
Q ss_pred hcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEE-EEcccHHH
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVI-YTTPIKAL 112 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vl-vl~P~~~L 112 (391)
..+++++++||||||||+.. .+++..+....+.+ .+--.+++
T Consensus 255 ~~~~~ILIsG~TGSGKTTll-~AL~~~i~~~~riV~TiEDp~El 297 (602)
T PRK13764 255 ERAEGILIAGAPGAGKSTFA-QALAEFYADMGKIVKTMESPRDL 297 (602)
T ss_pred hcCCEEEEECCCCCCHHHHH-HHHHHHHhhCCCEEEEECCCccc
Confidence 45788999999999999864 44555554444544 44333444
|
|
| >COG1485 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.66 E-value=2.4 Score=39.97 Aligned_cols=131 Identities=18% Similarity=0.200 Sum_probs=76.2
Q ss_pred CCccCCCCCcHHHHHHHHHHh------------c-------------CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEE
Q psy6275 50 PAREYPFVLDPFQKEAILCIE------------N-------------NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVI 104 (391)
Q Consensus 50 ~~~~~~~~~~~~Q~~~i~~i~------------~-------------~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vl 104 (391)
....-+|.+.+.|..++.++. . .+-+-+.|+-|.|||...-... +.+. ...-
T Consensus 18 ~~~~~~~~~D~aQ~~a~~~Ldrl~~~~~~~~~~~~~l~~lf~r~~~~~~GlYl~GgVGrGKT~LMD~Fy-~~lp--~~~k 94 (367)
T COG1485 18 LVPAGTFQPDPAQPAAAAALDRLYDELVAPRSARKALGWLFGRDHGPVRGLYLWGGVGRGKTMLMDLFY-ESLP--GERK 94 (367)
T ss_pred hcccCCCCCChHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCceEEEECCCCccHHHHHHHHH-hhCC--cccc
Confidence 334445667788887776441 1 1558899999999998643332 2221 1111
Q ss_pred EEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhH
Q psy6275 105 YTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVW 184 (391)
Q Consensus 105 vl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~ 184 (391)
.-++..+-+.++.+++..+- |.. +.+ +....+ ...+.+++.+||.+- .|-+....+
T Consensus 95 ~R~HFh~FM~~vH~~l~~l~-------g~~------dpl---~~iA~~-------~~~~~~vLCfDEF~V-tDI~DAMiL 150 (367)
T COG1485 95 RRLHFHRFMARVHQRLHTLQ-------GQT------DPL---PPIADE-------LAAETRVLCFDEFEV-TDIADAMIL 150 (367)
T ss_pred ccccHHHHHHHHHHHHHHHc-------CCC------Ccc---HHHHHH-------HHhcCCEEEeeeeee-cChHHHHHH
Confidence 22366677777777776654 221 111 111111 234788999999984 333333344
Q ss_pred HHHHHH-hCCCCcEEEEcccCCCh
Q psy6275 185 EETLIL-LSDNVRFVFLSATIPNA 207 (391)
Q Consensus 185 ~~i~~~-~~~~~~~i~~SAT~~~~ 207 (391)
..++.. +..++.++..|-|.|+.
T Consensus 151 ~rL~~~Lf~~GV~lvaTSN~~P~~ 174 (367)
T COG1485 151 GRLLEALFARGVVLVATSNTAPDN 174 (367)
T ss_pred HHHHHHHHHCCcEEEEeCCCChHH
Confidence 445443 46788899999998753
|
|
| >PRK14954 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=91.65 E-value=0.54 Score=48.32 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=18.1
Q ss_pred cEEEEecCCcchHHHHHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASS 96 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~ 96 (391)
..+++||.|+|||.++...+-..
T Consensus 40 a~Lf~Gp~GvGKttlA~~lAk~L 62 (620)
T PRK14954 40 GYIFSGLRGVGKTTAARVFAKAV 62 (620)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999876555443
|
|
| >PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional | Back alignment and domain information |
|---|
Probab=91.51 E-value=0.32 Score=46.22 Aligned_cols=22 Identities=14% Similarity=0.122 Sum_probs=16.8
Q ss_pred CcEEEEecCCcchHHHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIA 94 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~ 94 (391)
.-+++.||+|+|||+.+-..+-
T Consensus 149 lgllL~GPPGcGKTllAraiA~ 170 (413)
T PLN00020 149 LILGIWGGKGQGKSFQCELVFK 170 (413)
T ss_pred eEEEeeCCCCCCHHHHHHHHHH
Confidence 3478999999999997644443
|
|
| >PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length | Back alignment and domain information |
|---|
Probab=91.51 E-value=3.7 Score=35.87 Aligned_cols=92 Identities=17% Similarity=0.157 Sum_probs=55.5
Q ss_pred HHHHHHHHHhcCCc--EEEEecCCcc--hHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCccc
Q psy6275 61 FQKEAILCIENNQS--VLVSAHTSAG--KTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTI 136 (391)
Q Consensus 61 ~Q~~~i~~i~~~~~--~li~apTGsG--KT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~ 136 (391)
-=.+.|.++..|.| +++.+..+.| =|...+..+.+ ..++|.++++|...-..+..+.+.... .
T Consensus 28 ~~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr--~TgGR~vCIvp~~~~~~~~~~~l~~~~-----------~ 94 (218)
T PF07279_consen 28 GVAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAAR--QTGGRHVCIVPDEQSLSEYKKALGEAG-----------L 94 (218)
T ss_pred CHHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHH--hcCCeEEEEcCChhhHHHHHHHHhhcc-----------c
Confidence 34577888888766 5555544333 34444444433 369999999999877666555554432 1
Q ss_pred CCCCCEEEEc-HHHHHHHHhcCccccCccceEEEecc
Q psy6275 137 NPSSSCLIMT-TEILRNMLYRGSEITREVGWVIFDEI 172 (391)
Q Consensus 137 ~~~~~I~v~T-p~~l~~~l~~~~~~l~~~~~lViDE~ 172 (391)
...+.++++- ++.++. .+..+|++++|==
T Consensus 95 ~~~vEfvvg~~~e~~~~-------~~~~iDF~vVDc~ 124 (218)
T PF07279_consen 95 SDVVEFVVGEAPEEVMP-------GLKGIDFVVVDCK 124 (218)
T ss_pred cccceEEecCCHHHHHh-------hccCCCEEEEeCC
Confidence 2234566665 554443 2458999999843
|
The function of this family is unknown. |
| >TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
|---|
Probab=91.46 E-value=1.2 Score=47.07 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=16.8
Q ss_pred CCcEEEEecCCcchHHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~ 92 (391)
.+.+++.||+|+|||..+-..
T Consensus 487 ~~giLL~GppGtGKT~lakal 507 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAV 507 (733)
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 356899999999999875443
|
This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. |
| >TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB | Back alignment and domain information |
|---|
Probab=91.32 E-value=0.42 Score=45.75 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=20.4
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSL 97 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l 97 (391)
.+..++++||||||||+.. ..++..+
T Consensus 133 ~~glilI~GpTGSGKTTtL-~aLl~~i 158 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLL-AAIIREL 158 (358)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHH
Confidence 5778999999999999874 4455554
|
Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems. |
| >cd01125 repA Hexameric Replicative Helicase RepA | Back alignment and domain information |
|---|
Probab=91.31 E-value=1 Score=40.47 Aligned_cols=34 Identities=18% Similarity=0.213 Sum_probs=24.8
Q ss_pred cEEEEecCCcchHHHHHHHHHHHH------------hcCCeEEEEc
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASSL------------KQSQRVIYTT 107 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~l------------~~~~~vlvl~ 107 (391)
-.++.||.|+|||+..+..++... ..+.+|+|+.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~ 48 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLS 48 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEE
Confidence 468999999999997765554322 2456899987
|
RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent. |
| >TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD | Back alignment and domain information |
|---|
Probab=91.23 E-value=0.22 Score=50.61 Aligned_cols=44 Identities=18% Similarity=0.242 Sum_probs=30.8
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSN 114 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~ 114 (391)
+.+++++.|+||||||......+-....++.+++|+-|.-+...
T Consensus 175 e~~h~li~G~tGsGKs~~i~~ll~~~~~~g~~~ii~D~~g~~~~ 218 (566)
T TIGR02759 175 ETQHILIHGTTGSGKSVAIRKLLRWIRQRGDRAIIYDKGCTFTS 218 (566)
T ss_pred cccceEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCeeh
Confidence 46789999999999997643333333355778888888765543
|
The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM). |
| >KOG1016|consensus | Back alignment and domain information |
|---|
Probab=91.21 E-value=1.8 Score=44.62 Aligned_cols=52 Identities=19% Similarity=0.256 Sum_probs=36.2
Q ss_pred CCcEEEEecCCcchHHHHHHH---HHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYA---IASSLKQSQRVIYTTPIKALSNQKYREFEEQFK 125 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~---~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~ 125 (391)
|--+|+.-..|-|||+..+.. .+++ -....||+++|-..|-+ |..+|..+..
T Consensus 282 GFGCILAHSMGLGKTlQVisF~diflRh-T~AKtVL~ivPiNTlQN-WlsEfnmWiP 336 (1387)
T KOG1016|consen 282 GFGCILAHSMGLGKTLQVISFSDIFLRH-TKAKTVLVIVPINTLQN-WLSEFNMWIP 336 (1387)
T ss_pred CcceeeeeccccCceeEEeehhHHHhhc-CccceEEEEEehHHHHH-HHHHhhhhcC
Confidence 456888889999999854322 2232 23578999999888754 5667777765
|
|
| >PRK06321 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=91.17 E-value=0.81 Score=45.52 Aligned_cols=132 Identities=18% Similarity=0.163 Sum_probs=66.8
Q ss_pred hcCCcEEEEecCCcchHHHHHHHHHHHH-hcCCeEEEEcccHHHHHHHHHHHHHhcccce---eeeCCccc---------
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEYAIASSL-KQSQRVIYTTPIKALSNQKYREFEEQFKDVG---LITGDVTI--------- 136 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~~~~~~l-~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~---~~~g~~~~--------- 136 (391)
..|.-+++.|.||.|||...+-.+.+.. ..+..++++.. .--..|+..++......+. +..|....
T Consensus 224 ~~G~LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSL-EMs~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~~~~~~a 302 (472)
T PRK06321 224 SPSNLMILAARPAMGKTALALNIAENFCFQNRLPVGIFSL-EMTVDQLIHRIICSRSEVESKKISVGDLSGRDFQRIVSV 302 (472)
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEec-cCCHHHHHHHHHHhhcCCCHHHhhcCCCCHHHHHHHHHH
Confidence 3456678999999999987766554433 44667777742 2223344444332222111 11121110
Q ss_pred ---CCCCCEEEE-----cHHHHHHHHhcCccccCccceEEEecccccCccc-------cchhHHHHHHHhC-----CCCc
Q psy6275 137 ---NPSSSCLIM-----TTEILRNMLYRGSEITREVGWVIFDEIHYMRDKE-------RGYVWEETLILLS-----DNVR 196 (391)
Q Consensus 137 ---~~~~~I~v~-----Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~-------~~~~~~~i~~~~~-----~~~~ 196 (391)
-.+..+.|- |.+.+...+.+-.. -..++++|||=.+.+...+ +...+..+.+.+. .++.
T Consensus 303 ~~~l~~~~~~idd~~~~ti~~i~~~~r~~~~-~~~~~lvvIDyLql~~~~~~~~~~~~r~~ei~~Isr~LK~lAkel~vp 381 (472)
T PRK06321 303 VNEMQEHTLLIDDQPGLKITDLRARARRMKE-SYDIQFLIIDYLQLLSGSGNLRNSESRQTEISEISRMLKNLARELNIP 381 (472)
T ss_pred HHHHHcCCEEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHHcCCCCccCCcchHHHHHHHHHHHHHHHHHHhCCc
Confidence 012344443 44444433332111 1358999999999885321 1122333333332 3677
Q ss_pred EEEEccc
Q psy6275 197 FVFLSAT 203 (391)
Q Consensus 197 ~i~~SAT 203 (391)
++++|--
T Consensus 382 Vi~lsQL 388 (472)
T PRK06321 382 ILCLSQL 388 (472)
T ss_pred EEEEeec
Confidence 8887765
|
|
| >PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A | Back alignment and domain information |
|---|
Probab=91.15 E-value=0.44 Score=37.47 Aligned_cols=19 Identities=21% Similarity=0.426 Sum_probs=15.5
Q ss_pred EEEEecCCcchHHHHHHHH
Q psy6275 75 VLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 75 ~li~apTGsGKT~~~~~~~ 93 (391)
+++.|++|||||+.+-...
T Consensus 2 I~I~G~~gsGKST~a~~La 20 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELA 20 (121)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999998764444
|
... |
| >KOG0741|consensus | Back alignment and domain information |
|---|
Probab=91.08 E-value=1.7 Score=43.10 Aligned_cols=33 Identities=30% Similarity=0.309 Sum_probs=21.5
Q ss_pred cEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcc
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTP 108 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P 108 (391)
.+++.||+|||||..+.-.++. +.-+-+=++.|
T Consensus 540 SvLl~Gp~~sGKTaLAA~iA~~--S~FPFvKiiSp 572 (744)
T KOG0741|consen 540 SVLLEGPPGSGKTALAAKIALS--SDFPFVKIISP 572 (744)
T ss_pred EEEEecCCCCChHHHHHHHHhh--cCCCeEEEeCh
Confidence 5899999999999755433322 22345555555
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 391 | ||||
| 2xgj_A | 1010 | Structure Of Mtr4, A Dexh Helicase Involved In Nucl | 1e-130 | ||
| 3l9o_A | 1108 | Crystal Structure Of Mtr4, A Co-Factor Of The Nucle | 1e-130 | ||
| 4a4z_A | 997 | Crystal Structure Of The S. Cerevisiae Dexh Helicas | 4e-64 | ||
| 4a4z_A | 997 | Crystal Structure Of The S. Cerevisiae Dexh Helicas | 3e-11 | ||
| 2va8_A | 715 | Dna Repair Helicase Hel308 Length = 715 | 2e-19 | ||
| 2zj2_A | 720 | Archaeal Dna Helicase Hjm Apo State In Form 1 Lengt | 3e-18 | ||
| 2p6r_A | 702 | Crystal Structure Of Superfamily 2 Helicase Hel308 | 6e-16 | ||
| 4f92_B | 1724 | Brr2 Helicase Region S1087l Length = 1724 | 9e-12 | ||
| 4kit_B | 1739 | Crystal Structure Of Human Brr2 In Complex With The | 1e-11 | ||
| 4f91_B | 1724 | Brr2 Helicase Region Length = 1724 | 1e-11 | ||
| 4bgd_A | 1722 | Crystal Structure Of Brr2 In Complex With The Jab1/ | 3e-07 |
| >pdb|2XGJ|A Chain A, Structure Of Mtr4, A Dexh Helicase Involved In Nuclear Rna Processing And Surveillance Length = 1010 | Back alignment and structure |
|
| >pdb|3L9O|A Chain A, Crystal Structure Of Mtr4, A Co-Factor Of The Nuclear Exosome Length = 1108 | Back alignment and structure |
|
| >pdb|4A4Z|A Chain A, Crystal Structure Of The S. Cerevisiae Dexh Helicase Ski2 Bound To Amppnp Length = 997 | Back alignment and structure |
|
| >pdb|4A4Z|A Chain A, Crystal Structure Of The S. Cerevisiae Dexh Helicase Ski2 Bound To Amppnp Length = 997 | Back alignment and structure |
|
| >pdb|2VA8|A Chain A, Dna Repair Helicase Hel308 Length = 715 | Back alignment and structure |
|
| >pdb|2ZJ2|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 1 Length = 720 | Back alignment and structure |
|
| >pdb|2P6R|A Chain A, Crystal Structure Of Superfamily 2 Helicase Hel308 In Complex With Unwound Dna Length = 702 | Back alignment and structure |
|
| >pdb|4F92|B Chain B, Brr2 Helicase Region S1087l Length = 1724 | Back alignment and structure |
|
| >pdb|4F91|B Chain B, Brr2 Helicase Region Length = 1724 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} Length = 1010 | Back alignment and structure |
|---|
Score = 453 bits (1166), Expect = e-152
Identities = 224/365 (61%), Positives = 277/365 (75%), Gaps = 8/365 (2%)
Query: 22 VETLEACLHEVALPPDLEYQPLAQSKE-KPAREYPFVLDPFQKEAILCIENNQSVLVSAH 80
V H+VALPP+ +Y P+A+ K AR YPF LDPFQ AI CI+ +SVLVSAH
Sbjct: 50 VRLSHQVRHQVALPPNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAH 109
Query: 81 TSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSS 140
TSAGKTVVAEYAIA SLK QRVIYT+PIKALSNQKYRE +F DVGL+TGD+TINP +
Sbjct: 110 TSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITINPDA 169
Query: 141 SCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFL 200
CL+MTTEILR+MLYRGSE+ REV WVIFDE+HYMRDKERG VWEET+ILL D VR+VFL
Sbjct: 170 GCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFL 229
Query: 201 SATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDN-KFKEHN 259
SATIPNA +FA+W+ +H QPCH+VYT++RPTPLQHYLFP GDGI+L+VD+ F+E N
Sbjct: 230 SATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREEN 289
Query: 260 YQVAMNVLANAGDAAKAGDHKGGRKG------GPKGGVQTNCFKIVKMIMERNLAPVIVF 313
+Q AM ++N G+KG KG + + +KIVKMI ++ PVIVF
Sbjct: 290 FQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVF 349
Query: 314 SFSKKDCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRGI 373
SFSK+DCE A++M+KL+FN +E + + +F+NA+ +L E DR+LPQI++ILPLLRRGI
Sbjct: 350 SFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGI 409
Query: 374 GIHHG 378
GIHH
Sbjct: 410 GIHHS 414
|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} Length = 1108 | Back alignment and structure |
|---|
Score = 450 bits (1158), Expect = e-149
Identities = 224/365 (61%), Positives = 277/365 (75%), Gaps = 8/365 (2%)
Query: 22 VETLEACLHEVALPPDLEYQPLAQSKE-KPAREYPFVLDPFQKEAILCIENNQSVLVSAH 80
V H+VALPP+ +Y P+A+ K AR YPF LDPFQ AI CI+ +SVLVSAH
Sbjct: 148 VRLSHQVRHQVALPPNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAH 207
Query: 81 TSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSS 140
TSAGKTVVAEYAIA SLK QRVIYT+PIKALSNQKYRE +F DVGL+TGD+TINP +
Sbjct: 208 TSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITINPDA 267
Query: 141 SCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFL 200
CL+MTTEILR+MLYRGSE+ REV WVIFDE+HYMRDKERG VWEET+ILL D VR+VFL
Sbjct: 268 GCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFL 327
Query: 201 SATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDN-KFKEHN 259
SATIPNA +FA+W+ +H QPCH+VYT++RPTPLQHYLFP GDGI+L+VD+ F+E N
Sbjct: 328 SATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREEN 387
Query: 260 YQVAMNVLANAGDAAKAGDHKGGRKG------GPKGGVQTNCFKIVKMIMERNLAPVIVF 313
+Q AM ++N G+KG KG + + +KIVKMI ++ PVIVF
Sbjct: 388 FQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVF 447
Query: 314 SFSKKDCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRGI 373
SFSK+DCE A++M+KL+FN +E + + +F+NA+ +L E DR+LPQI++ILPLLRRGI
Sbjct: 448 SFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGI 507
Query: 374 GIHHG 378
GIHH
Sbjct: 508 GIHHS 512
|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A Length = 997 | Back alignment and structure |
|---|
Score = 400 bits (1028), Expect = e-131
Identities = 157/400 (39%), Positives = 227/400 (56%), Gaps = 53/400 (13%)
Query: 30 HEVALPPDLEYQPLAQSK--EKPAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTV 87
E A DL ++ + PAR +PF LD FQKEA+ +E SV V+AHTSAGKTV
Sbjct: 10 KEWAHVVDLNHKIENFDELIPNPARSWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTV 69
Query: 88 VAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQF--KDVGLITGDVTINPSSSCLIM 145
VAEYAIA + + + IYT+PIKALSNQK+R+F+E F ++GLITGDV INP ++CLIM
Sbjct: 70 VAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDVQINPDANCLIM 129
Query: 146 TTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIP 205
TTEILR+MLYRG+++ R+V +VIFDE+HY+ D++RG VWEE +I+L +V+F+ LSAT+P
Sbjct: 130 TTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSATVP 189
Query: 206 NASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDN-KFKEHNYQVAM 264
N +FA W+ + +V+ T RP PL+ ++ + +++ N +F E N++
Sbjct: 190 NTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWA--KKELIPVINQNSEFLEANFRKHK 247
Query: 265 NVLAN----------------------------------AGDAAKAGDHKGGRKGGPKGG 290
+L G++ + G ++GG +G G
Sbjct: 248 EILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIG 307
Query: 291 ------------VQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNETEEV 338
+ +IV + +R L P++VF FSKK CE YA + +NF +E
Sbjct: 308 SNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEK 367
Query: 339 KLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRGIGIHHG 378
+ ++ L +EDR LPQI LL RGI +HHG
Sbjct: 368 SQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHG 407
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Length = 715 | Back alignment and structure |
|---|
Score = 282 bits (724), Expect = 5e-89
Identities = 78/358 (21%), Positives = 150/358 (41%), Gaps = 59/358 (16%)
Query: 38 LEYQPL--------AQSKEKPAREYPFVLDPFQKEAI-LCIENNQSVLVSAHTSAGKTVV 88
LE + + + E + L+P Q EA+ + +L+++ T +GKT++
Sbjct: 3 LELEWMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLI 62
Query: 89 AEYAIASSLKQS-QRVIYTTPIKALSNQKYREF---EEQFKDVGLITGDVTINP----SS 140
AE I S L ++ + IY TP++AL+N+KY F E V + +GD + +
Sbjct: 63 AEMGIISFLLKNGGKAIYVTPLRALTNEKYLTFKDWELIGFKVAMTSGDYDTDDAWLKNY 122
Query: 141 SCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFL 200
+I T E L ++ E EV + + DE+HY+ D ERG V E++ + + + L
Sbjct: 123 DIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPERGPVV-ESVTIRAKRRNLLAL 181
Query: 201 SATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPL-QHYLFPNGGDGIHLIVDDNKFKEHN 259
SATI N Q A+W+ V T++RP PL + ++P + ++ + +
Sbjct: 182 SATISNYKQIAKWLG------AEPVATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKKV 235
Query: 260 YQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKD 319
+ + + + + + V+VF S+K
Sbjct: 236 H--GDDAI---------------------------IAYTLDSLSKNG--QVLVFRNSRKM 264
Query: 320 CEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRGIGIHH 377
E A+++A + + + ++ D+ + ++ L+ +G+ HH
Sbjct: 265 AESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLK---SLISKGVAYHH 319
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Length = 702 | Back alignment and structure |
|---|
Score = 222 bits (568), Expect = 2e-66
Identities = 70/354 (19%), Positives = 141/354 (39%), Gaps = 66/354 (18%)
Query: 34 LPPDLEYQPLAQSKEKPAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAI 93
L + + KE+ E L P Q EA+ + + +++L++ T+AGKT++AE A+
Sbjct: 6 LAESISSYAVGILKEEGIEE----LFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAM 61
Query: 94 ASSLKQSQRVIYTTPIKALSNQKYREFEEQFK---DVGLITGDVTINP----SSSCLIMT 146
+ + +Y P++AL+ +KY F++ K +G+ TGD ++ T
Sbjct: 62 VREAIKGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDEHLGDCDIIVTT 121
Query: 147 TEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILL---SDNVRFVFLSAT 203
+E +++ + + V ++ DEIH + ++RG E + + + +R + LSAT
Sbjct: 122 SEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSAT 181
Query: 204 IPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVA 263
PN ++ A+W+ +D+RP PL + + L D F
Sbjct: 182 APNVTEIAEWLD------ADYYVSDWRPVPLVEGVL--CEGTLELF--DGAFSTSRRVKF 231
Query: 264 MNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIY 323
+ + + + E V+VF +++ E
Sbjct: 232 EEL-------------------------------VEECVAENG--GVLVFESTRRGAEKT 258
Query: 324 AMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRGIGIHH 377
A++++ + E L + +S + + +R+G HH
Sbjct: 259 AVKLSAITAKYVENEGLEKAILEENEGEMSRKLAE---------CVRKGAAFHH 303
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Length = 720 | Back alignment and structure |
|---|
Score = 220 bits (563), Expect = 1e-65
Identities = 72/329 (21%), Positives = 138/329 (41%), Gaps = 60/329 (18%)
Query: 58 LDPFQKEAILC-IENNQSVLVSAHTSAGKTVVAEYAIASSLKQS-QRVIYTTPIKALSNQ 115
P Q EA+ I ++ L+S T++GKT++AE A+ + + +Y P+KAL+ +
Sbjct: 24 FYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEE 83
Query: 116 KYREFEEQFK---DVGLITGDVTINP----SSSCLIMTTEILRNMLYRGSEITREVGWVI 168
K++EF++ K V + TGD +I T E ++L GS ++V ++
Sbjct: 84 KFQEFQDWEKIGLRVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILV 143
Query: 169 FDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTD 228
DEIH + ++RG E L + + + LSATI N + A+W++ ++ +D
Sbjct: 144 ADEIHLIGSRDRGATLEVILAHMLGKAQIIGLSATIGNPEELAEWLN------AELIVSD 197
Query: 229 YRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPK 288
+RP L+ +F G V + + L
Sbjct: 198 WRPVKLRRGVFYQG------FVTWEDGSIDRFS-SWEEL--------------------- 229
Query: 289 GGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNETEEVKLVDDVFSNA 348
+ I ++ ++F ++ E A++++K + L+ A
Sbjct: 230 ---------VYDAIRKKK--GALIFVNMRRKAERVALELSK------KVKSLLTKPEIRA 272
Query: 349 MDVLSEEDRKLPQIENILPLLRRGIGIHH 377
++ L++ + P E + +R G+ HH
Sbjct: 273 LNELADSLEENPTNEKLAKAIRGGVAFHH 301
|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} Length = 216 | Back alignment and structure |
|---|
Score = 95.3 bits (237), Expect = 5e-23
Identities = 35/177 (19%), Positives = 62/177 (35%), Gaps = 29/177 (16%)
Query: 33 ALPPDLEYQPLAQSKEKPAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYA 92
+ D + + +A L P+Q E +++++ T +GKT VA Y
Sbjct: 12 TMGSDSDEENVAARASPEP---ELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYI 68
Query: 93 IASSLKQSQ------RVIYTTPIKALSNQKYREFEEQFK----DVGLITGDVTINP---- 138
L + + +VI L Q +R+ + F V ++GD +
Sbjct: 69 AKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPE 128
Query: 139 ---SSSCLIMTTEILRNMLYRGSEITR------EVGWVIFDEIHYMRDKERGYVWEE 186
S +I T +IL N L + +I DE H+ + V+
Sbjct: 129 VVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKE---AVYNN 182
|
| >3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A Length = 677 | Back alignment and structure |
|---|
Score = 69.2 bits (168), Expect = 8e-13
Identities = 26/173 (15%), Positives = 59/173 (34%), Gaps = 13/173 (7%)
Query: 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLI 130
+ + S T++GKT A ++ +Y P+K L+++ + + L+
Sbjct: 154 QRKIIFHSGPTNSGKTYHAIQK----YFSAKSGVYCGPLKLLAHEIFEKSNAAGVPCDLV 209
Query: 131 TGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLIL 190
TG+ + + + + +T + DEI +RD RG+ W L+
Sbjct: 210 TGEERVTVQPNGKQASHVSCTVEMCS---VTTPYEVAVIDEIQMIRDPARGWAWTRALLG 266
Query: 191 LSDNVRFVFLSATIPN------ASQFAQWVSHLHHQPCHVVYTDYRPTPLQHY 237
L + + + + + + + D+ L +
Sbjct: 267 LCAEEVHLCGEPAAIDLVMELMYTTGEEVEVRDYKRLTPISVLDHALESLDNL 319
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 | Back alignment and structure |
|---|
Score = 65.6 bits (159), Expect = 7e-12
Identities = 31/181 (17%), Positives = 59/181 (32%), Gaps = 11/181 (6%)
Query: 72 NQSVLVSAHTSAGKTVVAEYAIASSL-KQSQRVIYTTPIKALSNQKYREFEEQFK----D 126
+ L+ T GKT++A L K +V+ P K L Q F F
Sbjct: 23 ETNCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEK 82
Query: 127 VGLITGDVTINP------SSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKER 180
+ +TG+ + + ++ T + + N L G +V ++FDE H
Sbjct: 83 IVALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYA 142
Query: 181 GYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFP 240
+ N + L+A+ + + V + ++ P +
Sbjct: 143 YVFIAREYKRQAKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGI 202
Query: 241 N 241
Sbjct: 203 R 203
|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 Length = 237 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 3e-10
Identities = 26/125 (20%), Positives = 48/125 (38%), Gaps = 9/125 (7%)
Query: 50 PAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPI 109
P + L +Q++A+ ++ + T +GKT VA A + L ++ T
Sbjct: 86 PYFDAEISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVA-MAAINELSTPTLIVVPT-- 142
Query: 110 KALSNQKYREFEEQFKD-VGLITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVI 168
AL+ Q ++ VG +G I + T + ++ +I
Sbjct: 143 LALAEQWKERLGIFGEEYVGEFSGR--IKELKPLTVSTYDSAYVNAE---KLGNRFMLLI 197
Query: 169 FDEIH 173
FDE+H
Sbjct: 198 FDEVH 202
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Length = 555 | Back alignment and structure |
|---|
Score = 60.7 bits (146), Expect = 3e-10
Identities = 32/145 (22%), Positives = 53/145 (36%), Gaps = 24/145 (16%)
Query: 51 AREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQ-----RVIY 105
R Y Q E L + ++ ++ A T GKT V+ LK+ +V++
Sbjct: 5 PRNY-------QLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVF 57
Query: 106 TTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSC-----------LIMTTEILRNML 154
+ Q+ F F+ +G ++ S S +I+T +IL N L
Sbjct: 58 FANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNL 117
Query: 155 YRGS-EITREVGWVIFDEIHYMRDK 178
G+ +IFDE H
Sbjct: 118 NNGAIPSLSVFTLMIFDECHNTSKN 142
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Length = 472 | Back alignment and structure |
|---|
Score = 59.1 bits (143), Expect = 8e-10
Identities = 32/158 (20%), Positives = 56/158 (35%), Gaps = 16/158 (10%)
Query: 48 EKPAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTT 107
P + L +Q++A+ ++ + T +GKT VA AI + S +
Sbjct: 84 PTPYFDAEISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAIN---ELSTPTLIVV 140
Query: 108 PIKALSNQKYREFEE-QFKDVGLITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGW 166
P AL+ Q + VG +G I + T + ++
Sbjct: 141 PTLALAEQWKERLGIFGEEYVGEFSGR--IKELKPLTVSTYDSAYVNA---EKLGNRFML 195
Query: 167 VIFDEIHYMRDKERGYVWEETLILLSDNVRFVF-LSAT 203
+IFDE+H++ + I F L+AT
Sbjct: 196 LIFDEVHHLPAESY------VQIAQMSIAPFRLGLTAT 227
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Length = 696 | Back alignment and structure |
|---|
Score = 59.2 bits (142), Expect = 1e-09
Identities = 33/139 (23%), Positives = 55/139 (39%), Gaps = 17/139 (12%)
Query: 55 PFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ-----SQRVIYTTPI 109
PF +Q E L ++ ++ A T GKT V+ LK+ +V++
Sbjct: 11 PFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQ 70
Query: 110 KALSNQKYREFEEQFK----DVGLITGDVTINP-------SSSCLIMTTEILRNMLYRGS 158
+ Q F + F+ V I+G N ++ +I+T +IL N L +G+
Sbjct: 71 IPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGT 130
Query: 159 -EITREVGWVIFDEIHYMR 176
+IFDE H
Sbjct: 131 IPSLSIFTLMIFDECHNTS 149
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Length = 556 | Back alignment and structure |
|---|
Score = 58.8 bits (141), Expect = 1e-09
Identities = 33/149 (22%), Positives = 55/149 (36%), Gaps = 24/149 (16%)
Query: 47 KEKPAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ-----SQ 101
+ K AR Y Q E N ++ L+ A T +GKT V+ +
Sbjct: 4 ETKKARSY-------QIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKA 56
Query: 102 RVIYTTPIKALSNQKYREFEEQFK----DVGLITGDVTIN-------PSSSCLIMTTEIL 150
+V++ + Q+ F+ F+ V I+G+ N S +++T +IL
Sbjct: 57 KVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQIL 116
Query: 151 RNMLYRGSEI-TREVGWVIFDEIHYMRDK 178
N G+ +IFDE H
Sbjct: 117 VNSFEDGTLTSLSIFTLMIFDECHNTTGN 145
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Length = 936 | Back alignment and structure |
|---|
Score = 58.4 bits (140), Expect = 2e-09
Identities = 38/200 (19%), Positives = 69/200 (34%), Gaps = 29/200 (14%)
Query: 35 PPDLEYQPLAQSKEKPAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIA 94
+ +P + K AR Y Q E N ++ L+ A T +GKT V+
Sbjct: 233 AAEGIGKPPPVYETKKARSY-------QIELAQPAINGKNALICAPTGSGKTFVSILICE 285
Query: 95 SSLKQ-----SQRVIYTTPIKALSNQKYREFEEQFK----DVGLITGDVTIN-------P 138
+ +V++ + Q+ F+ F+ V I+G+ N
Sbjct: 286 HHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIE 345
Query: 139 SSSCLIMTTEILRNMLYRGSEI-TREVGWVIFDEIHYMRDKERG-----YVWEETLILLS 192
S +++T +IL N G+ +IFDE H E+ S
Sbjct: 346 DSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSAS 405
Query: 193 DNVRFVFLSATIPNASQFAQ 212
+ + L+A++ +
Sbjct: 406 QLPQILGLTASVGVGNAKNI 425
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Length = 440 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 7e-09
Identities = 29/186 (15%), Positives = 59/186 (31%), Gaps = 19/186 (10%)
Query: 68 CIENNQSVLVSAHTSAGK-TVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKD 126
++ + ++ H AGK +A ++ R + P + + ++ F D
Sbjct: 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGL--D 61
Query: 127 VGLITGDVTINPSSSCLIMT-TE-ILRNMLYRGSEITREVGWVIFDEIH---YMRDKERG 181
V T + + S +I L + + + +I DE H RG
Sbjct: 62 VKFHTQAFSAHGSGREVIDAMCHATLTYRMLEPTRVV-NWEVIIMDEAHFLDPASIAARG 120
Query: 182 YVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPL---QHYL 238
+ ++ + ++AT P S H + V TD P ++
Sbjct: 121 WA---AHRARANESATILMTATPPGTS---DEFPH-SNGEIEDVQTDIPSEPWNTGHDWI 173
Query: 239 FPNGGD 244
+
Sbjct: 174 LADKRP 179
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Length = 797 | Back alignment and structure |
|---|
Score = 56.5 bits (135), Expect = 7e-09
Identities = 34/161 (21%), Positives = 58/161 (36%), Gaps = 24/161 (14%)
Query: 35 PPDLEYQPLAQSKEKPAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIA 94
+ +P + K AR Y Q E N ++ L+ A T +GKT V+
Sbjct: 233 AAEGIGKPPPVYETKKARSY-------QIELAQPAINGKNALICAPTGSGKTFVSILICE 285
Query: 95 SSLKQ-----SQRVIYTTPIKALSNQKYREFEEQFK----DVGLITGDVTIN-------P 138
+ +V++ + Q+ F+ F+ V I+G+ N
Sbjct: 286 HHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIE 345
Query: 139 SSSCLIMTTEILRNMLYRGSEI-TREVGWVIFDEIHYMRDK 178
S +++T +IL N G+ +IFDE H
Sbjct: 346 DSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGN 386
|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Length = 451 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 2e-08
Identities = 23/177 (12%), Positives = 52/177 (29%), Gaps = 18/177 (10%)
Query: 69 IENNQSVLVSAHTSAGK-TVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDV 127
+ ++ H AGK + + +L + R + P + ++ +
Sbjct: 16 FRKKRLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPTRVVAAEMEEALRGLPIRY 75
Query: 128 GLITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKE---RGYVW 184
+M L + + ++ DE H+ RGY+
Sbjct: 76 QTPAVKSDHTGREIVDLMCHATFTTRLLSSTRV-PNYNLIVMDEAHFTDPCSVAARGYI- 133
Query: 185 EETLILLSDNVRFVFLSATIPNAS-QFAQWVSHLHHQPCHVVYTDY----RPTPLQH 236
+ + +F++AT P ++ F Q + P + + T
Sbjct: 134 --STRVEMGEAAAIFMTATPPGSTDPFPQ-----SNSPIEDIEREIPERSWNTGFDW 183
|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A Length = 431 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 3e-07
Identities = 24/167 (14%), Positives = 47/167 (28%), Gaps = 22/167 (13%)
Query: 72 NQSVLVSAHTSAGK-TVVAEYAIASSLKQSQRVIYTTP--------IKALSNQKYREFEE 122
+ ++ H AGK V + ++K+ R + P +AL E
Sbjct: 2 RELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASEMYEALR-------GE 54
Query: 123 QFKDVGLITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGY 182
+ + + M L +G + I DE H++
Sbjct: 55 PIRYMTPAVQSER-TGNEIVDFMCHSTFTMKLLQGVRV-PNYNLYIMDEAHFLDPASVAA 112
Query: 183 VWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDY 229
+ + +F++AT P + + P T
Sbjct: 113 RGYIETRVSMGDAGAIFMTATPPGTT----EAFPPSNSPIIDEETRI 155
|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A Length = 459 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 1e-06
Identities = 21/143 (14%), Positives = 47/143 (32%), Gaps = 12/143 (8%)
Query: 69 IENNQSVLVSAHTSAGK-TVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREF--EEQFK 125
+ Q ++ H +GK + I +++Q R P + ++ +
Sbjct: 18 LRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALRGLPVRY 77
Query: 126 DVGLITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKE---RGY 182
+ + + +M L + L + + + DE H+ RGY
Sbjct: 78 QTSAVQREHQ--GNEIVDVMCHATLTHRLMSPNRV-PNYNLFVMDEAHFTDPASIAARGY 134
Query: 183 VWEETLILLSDNVRFVFLSATIP 205
+ + +F++AT P
Sbjct: 135 I---ATKVELGEAAAIFMTATPP 154
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} Length = 235 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 2e-06
Identities = 46/171 (26%), Positives = 70/171 (40%), Gaps = 30/171 (17%)
Query: 62 QKEAIL-CIENNQSVLVSAHTSAGKTV-----VAEYAIASSLKQSQRVIYTTP--IKALS 113
+ IL I N V++ T GKT + + I + ++ T P I A+S
Sbjct: 65 FESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVS 124
Query: 114 NQKYREFEEQFKDVGLITG------DVTINPSSSCLIMTTEILRNMLYRGSEITREVGWV 167
+ R E+ ++ G G + P +S + T +L L G R + V
Sbjct: 125 VAE-RVAFERGEEPGKSCGYSVRFESILPRPHASIMFCTVGVLLRKLEAG---IRGISHV 180
Query: 168 IFDEIHYMRDKERGYVWEETLILLSD------NVRFVFLSATIPNASQFAQ 212
I DEIH ER + L++L D VR V +SATI + S F +
Sbjct: 181 IVDEIH-----ERDINTDFLLVVLRDVVQAYPEVRIVLMSATI-DTSMFCE 225
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 3e-05
Identities = 55/378 (14%), Positives = 101/378 (26%), Gaps = 101/378 (26%)
Query: 39 EYQPLAQSKEKPAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK 98
E + SK+ + + L + + V + + L+
Sbjct: 50 EIDHIIMSKDAVSGTL-RLFW------TLLSKQEEMV--------------QKFVEEVLR 88
Query: 99 QSQRVIYTTPIKALSNQK---YREFEEQFKDVGLITGDVTINPSSSCLIMTTEILRNMLY 155
+ + + + PIK Q R + EQ +D L + + + LR L
Sbjct: 89 INYKFLMS-PIKTEQRQPSMMTRMYIEQ-RDR-LYNDNQVFAKYNVSRLQPYLKLRQALL 145
Query: 156 RGSEITREVGWVIFDEIHYM-------------RDKERGYVWEETLILLSDNVRFVFLSA 202
R V+ I + + + + ++ L
Sbjct: 146 E----LRPAKNVL---IDGVLGSGKTWVALDVCLS-------YKVQCKMDFKIFWLNLKN 191
Query: 203 TIPNASQFAQWVSHLHHQ--PCHVVYTDYRPTPLQHYLFPNGGDGIHLIVD--DNKFKEH 258
+ + L +Q P +D+ IH I K
Sbjct: 192 CNSPETVLEM-LQKLLYQIDPNWTSRSDHSSNIKLR---------IHSIQAELRRLLKSK 241
Query: 259 NYQVAMNVLANAGDA--AKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFS 316
Y+ + VL N +A A + C KI ++ R V F +
Sbjct: 242 PYENCLLVLLNVQNAKAWNAFNLS--------------C-KI--LLTTRF-KQVTDFLSA 283
Query: 317 KKDCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLP-QIENILPLLRRGIG- 374
I ++ + E L L + LP ++ P I
Sbjct: 284 ATTTHI-SLDHHSMTLTPDEVKSL----LLK---YLDCRPQDLPREVLTTNPRRLSIIAE 335
Query: 375 -IHHGVKPYGLWQSKKIN 391
I G+ + W K +N
Sbjct: 336 SIRDGLATWDNW--KHVN 351
|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A* 1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A Length = 666 | Back alignment and structure |
|---|
Score = 45.0 bits (106), Expect = 3e-05
Identities = 28/160 (17%), Positives = 45/160 (28%), Gaps = 20/160 (12%)
Query: 60 PFQKEAILCIENNQSVLVSAHTSAGKT--VVAEYAIASSLKQSQRVIYTTPIKALSNQKY 117
++ Q + A T +GK+ V A Y Q +V+ P A +
Sbjct: 220 TDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAY-----AAQGYKVLVLNPSVAATLGFG 274
Query: 118 REFEEQF-KDVGLITGDVTINPSSSCLIMT--TEILRNMLYRGSEITREVGWVIFDEIHY 174
+ D + TG TI + T + +I DE H
Sbjct: 275 AYMSKAHGIDPNIRTGVRTITTGAPVTYSTYGKFLADGGCS-----GGAYDIIICDECHS 329
Query: 175 MR---DKERGYVWEETLILLSDNVRFVFLSATIPNASQFA 211
G V ++ V +AT P +
Sbjct: 330 TDSTTILGIGTVLDQAETA--GARLVVLATATPPGSVTVP 367
|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} Length = 673 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 3e-04
Identities = 25/143 (17%), Positives = 52/143 (36%), Gaps = 12/143 (8%)
Query: 69 IENNQSVLVSAHTSAGK-TVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDV 127
++ Q ++ H AGK + I ++++ R P + ++ + V
Sbjct: 238 LKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVVAAEMAEALRGLP--V 295
Query: 128 GLITGDVTINPSSSCLI--MTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKE---RGY 182
+T V S + ++ M L + L + + DE H+ RGY
Sbjct: 296 RYLTPAVQREHSGNEIVDVMCHATLTHRLMSPLRV-PNYNLFVMDEAHFTDPASIAARGY 354
Query: 183 VWEETLILLSDNVRFVFLSATIP 205
+ + + +F++AT P
Sbjct: 355 IAT---RVEAGEAAAIFMTATPP 374
|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A Length = 618 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 5e-04
Identities = 24/167 (14%), Positives = 56/167 (33%), Gaps = 16/167 (9%)
Query: 69 IENNQSVLVSAHTSAGKTV-VAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDV 127
+ ++ H AGKT + + +LK+ R + P + ++ + +
Sbjct: 183 FRKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALRGL--PI 240
Query: 128 GLITGDVTINPSSSCLI--MTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKE---RGY 182
T V + + ++ M L + + ++ DE H+ RGY
Sbjct: 241 RYQTPAVKSDHTGREIVDLMCHATFTTRLLSSTRV-PNYNLIVMDEAHFTDPCSVAARGY 299
Query: 183 VWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDY 229
+ + +F++AT P ++ + P + +
Sbjct: 300 IST---RVEMGEAAAIFMTATPPGST----DPFPQSNSPIEDIEREI 339
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 391 | |||
| 2xgj_A | 1010 | ATP-dependent RNA helicase DOB1; hydrolase-RNA com | 100.0 | |
| 3l9o_A | 1108 | ATP-dependent RNA helicase DOB1; REC-A fold, winge | 100.0 | |
| 4a4z_A | 997 | Antiviral helicase SKI2; hydrolase, ATPase, mRNA d | 100.0 | |
| 2db3_A | 434 | ATP-dependent RNA helicase VASA; DEAD-BOX, protein | 100.0 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 100.0 | |
| 2i4i_A | 417 | ATP-dependent RNA helicase DDX3X; DEAD, structural | 100.0 | |
| 3eiq_A | 414 | Eukaryotic initiation factor 4A-I; PDCD4, anti-onc | 100.0 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 100.0 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 100.0 | |
| 1s2m_A | 400 | Putative ATP-dependent RNA helicase DHH1; ATP-bind | 100.0 | |
| 3fht_A | 412 | ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box | 100.0 | |
| 3pey_A | 395 | ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A | 100.0 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 100.0 | |
| 3fmp_B | 479 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 100.0 | |
| 2va8_A | 715 | SSO2462, SKI2-type helicase; hydrolase, DNA repair | 100.0 | |
| 1hv8_A | 367 | Putative ATP-dependent RNA helicase MJ0669; RNA-bi | 100.0 | |
| 2zj8_A | 720 | DNA helicase, putative SKI2-type helicase; RECA fo | 100.0 | |
| 2p6r_A | 702 | Afuhel308 helicase; protein-DNA complex, SF2 helic | 100.0 | |
| 1fuu_A | 394 | Yeast initiation factor 4A; IF4A, helicase, DEAD-b | 100.0 | |
| 2z0m_A | 337 | 337AA long hypothetical ATP-dependent RNA helicase | 100.0 | |
| 3sqw_A | 579 | ATP-dependent RNA helicase MSS116, mitochondrial; | 100.0 | |
| 3i5x_A | 563 | ATP-dependent RNA helicase MSS116; protein-RNA com | 100.0 | |
| 1oyw_A | 523 | RECQ helicase, ATP-dependent DNA helicase; winged | 100.0 | |
| 3oiy_A | 414 | Reverse gyrase helicase domain; topoisomerase, DNA | 100.0 | |
| 3fho_A | 508 | ATP-dependent RNA helicase DBP5; mRNA export, ATPa | 100.0 | |
| 2v1x_A | 591 | ATP-dependent DNA helicase Q1; DNA strand annealin | 100.0 | |
| 4ddu_A | 1104 | Reverse gyrase; topoisomerase, DNA supercoiling, a | 99.97 | |
| 3fe2_A | 242 | Probable ATP-dependent RNA helicase DDX5; DEAD, AD | 99.97 | |
| 3iuy_A | 228 | Probable ATP-dependent RNA helicase DDX53; REC-A-l | 99.97 | |
| 1vec_A | 206 | ATP-dependent RNA helicase P54; DEAD-box protein, | 99.97 | |
| 1q0u_A | 219 | Bstdead; DEAD protein, RNA binding protein; 1.85A | 99.97 | |
| 1wrb_A | 253 | DJVLGB; RNA helicase, DEAD BOX, VASA, structural g | 99.97 | |
| 3fmo_B | 300 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 99.97 | |
| 3bor_A | 237 | Human initiation factor 4A-II; translation initiat | 99.97 | |
| 2oxc_A | 230 | Probable ATP-dependent RNA helicase DDX20; DEAD, s | 99.97 | |
| 2gxq_A | 207 | Heat resistant RNA dependent ATPase; RNA helicase, | 99.97 | |
| 4a2p_A | 556 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.97 | |
| 1qde_A | 224 | EIF4A, translation initiation factor 4A; DEAD box | 99.97 | |
| 2pl3_A | 236 | Probable ATP-dependent RNA helicase DDX10; DEAD, s | 99.97 | |
| 3ly5_A | 262 | ATP-dependent RNA helicase DDX18; alpha-beta, stru | 99.97 | |
| 3ber_A | 249 | Probable ATP-dependent RNA helicase DDX47; DEAD, A | 99.97 | |
| 3tbk_A | 555 | RIG-I helicase domain; DECH helicase, ATP binding, | 99.97 | |
| 1t6n_A | 220 | Probable ATP-dependent RNA helicase; RECA-like fol | 99.97 | |
| 2ykg_A | 696 | Probable ATP-dependent RNA helicase DDX58; hydrola | 99.96 | |
| 3dkp_A | 245 | Probable ATP-dependent RNA helicase DDX52; DEAD, A | 99.96 | |
| 4a2q_A | 797 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.96 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 99.96 | |
| 4gl2_A | 699 | Interferon-induced helicase C domain-containing P; | 99.95 | |
| 1gku_B | 1054 | Reverse gyrase, TOP-RG; topoisomerase, DNA superco | 99.95 | |
| 4a2w_A | 936 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.95 | |
| 2oca_A | 510 | DAR protein, ATP-dependent DNA helicase UVSW; ATP- | 99.95 | |
| 2eyq_A | 1151 | TRCF, transcription-repair coupling factor; MFD, S | 99.94 | |
| 2fwr_A | 472 | DNA repair protein RAD25; DNA unwinding, XPB, DNA | 99.94 | |
| 2whx_A | 618 | Serine protease/ntpase/helicase NS3; transcription | 99.94 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 99.94 | |
| 2jlq_A | 451 | Serine protease subunit NS3; ribonucleoprotein, nu | 99.94 | |
| 1tf5_A | 844 | Preprotein translocase SECA subunit; ATPase, helic | 99.94 | |
| 2fsf_A | 853 | Preprotein translocase SECA subunit; ATPase, DNA-R | 99.94 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 99.93 | |
| 1nkt_A | 922 | Preprotein translocase SECA 1 subunit; preprotein | 99.93 | |
| 3o8b_A | 666 | HCV NS3 protease/helicase; ntpase, RNA, translocat | 99.92 | |
| 3h1t_A | 590 | Type I site-specific restriction-modification syst | 99.92 | |
| 2wv9_A | 673 | Flavivirin protease NS2B regulatory subunit, FLAV | 99.92 | |
| 2v6i_A | 431 | RNA helicase; membrane, hydrolase, transmembrane, | 99.92 | |
| 1yks_A | 440 | Genome polyprotein [contains: flavivirin protease | 99.91 | |
| 3b6e_A | 216 | Interferon-induced helicase C domain-containing P; | 99.9 | |
| 2z83_A | 459 | Helicase/nucleoside triphosphatase; hydrolase, mem | 99.9 | |
| 1rif_A | 282 | DAR protein, DNA helicase UVSW; bacteriophage, REC | 99.89 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 99.88 | |
| 3rc3_A | 677 | ATP-dependent RNA helicase SUPV3L1, mitochondrial; | 99.88 | |
| 3dmq_A | 968 | RNA polymerase-associated protein RAPA; SWF2/SNF2, | 99.86 | |
| 1z63_A | 500 | Helicase of the SNF2/RAD54 hamily; protein-DNA com | 99.84 | |
| 2w00_A | 1038 | HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri | 99.84 | |
| 2fz4_A | 237 | DNA repair protein RAD25; RECA-like domain, DNA da | 99.84 | |
| 2ipc_A | 997 | Preprotein translocase SECA subunit; nucleotide bi | 99.81 | |
| 3mwy_W | 800 | Chromo domain-containing protein 1; SWI2/SNF2 ATPa | 99.73 | |
| 2vl7_A | 540 | XPD; helicase, unknown function; 2.25A {Sulfolobus | 99.72 | |
| 1z3i_X | 644 | Similar to RAD54-like; recombination ATPase helica | 99.72 | |
| 3jux_A | 822 | Protein translocase subunit SECA; protein transloc | 99.69 | |
| 3crv_A | 551 | XPD/RAD3 related DNA helicase; XPD helicase DNA re | 99.57 | |
| 1c4o_A | 664 | DNA nucleotide excision repair enzyme UVRB; uvrabc | 99.41 | |
| 2d7d_A | 661 | Uvrabc system protein B; helicase, protein-DNA-ADP | 99.26 | |
| 1w36_D | 608 | RECD, exodeoxyribonuclease V alpha chain; recombin | 98.98 | |
| 4a15_A | 620 | XPD helicase, ATP-dependent DNA helicase TA0057; h | 98.79 | |
| 3e1s_A | 574 | Exodeoxyribonuclease V, subunit RECD; alpha and be | 98.69 | |
| 4b3f_X | 646 | DNA-binding protein smubp-2; hydrolase, helicase; | 98.57 | |
| 3upu_A | 459 | ATP-dependent DNA helicase DDA; RECA-like domain, | 98.52 | |
| 2gk6_A | 624 | Regulator of nonsense transcripts 1; UPF1, helicas | 98.46 | |
| 2hjv_A | 163 | ATP-dependent RNA helicase DBPA; parallel alpha-be | 98.44 | |
| 1t5i_A | 172 | C_terminal domain of A probable ATP-dependent RNA | 98.4 | |
| 2xzl_A | 802 | ATP-dependent helicase NAM7; hydrolase-RNA complex | 98.37 | |
| 2wjy_A | 800 | Regulator of nonsense transcripts 1; nonsense medi | 98.35 | |
| 1fuk_A | 165 | Eukaryotic initiation factor 4A; helicase, DEAD-bo | 98.3 | |
| 2p6n_A | 191 | ATP-dependent RNA helicase DDX41; DEAD, structural | 98.29 | |
| 2rb4_A | 175 | ATP-dependent RNA helicase DDX25; rossmann fold, s | 98.26 | |
| 2jgn_A | 185 | DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp | 98.24 | |
| 3lfu_A | 647 | DNA helicase II; SF1 helicase, ATP-binding, DNA da | 98.21 | |
| 3eaq_A | 212 | Heat resistant RNA dependent ATPase; DEAD box RNA | 98.17 | |
| 3i32_A | 300 | Heat resistant RNA dependent ATPase; RNA helicase, | 98.11 | |
| 2yjt_D | 170 | ATP-dependent RNA helicase SRMB, regulator of ribo | 97.3 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 97.84 | |
| 2o0j_A | 385 | Terminase, DNA packaging protein GP17; nucleotide- | 97.78 | |
| 3cpe_A | 592 | Terminase, DNA packaging protein GP17; large termi | 97.69 | |
| 3vkw_A | 446 | Replicase large subunit; alpha/beta domain, helica | 97.62 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 97.59 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 97.5 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 97.45 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 97.39 | |
| 2j9r_A | 214 | Thymidine kinase; TK1, DNK, lasso, transferase, AT | 97.39 | |
| 1w4r_A | 195 | Thymidine kinase; type II, human, cytosolic, phosp | 97.32 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 97.26 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 97.23 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 97.23 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 97.12 | |
| 3e2i_A | 219 | Thymidine kinase; Zn-binding, ATP-binding, DNA syn | 97.05 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 97.04 | |
| 2orv_A | 234 | Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 | 97.04 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 97.02 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 97.0 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 96.99 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 96.93 | |
| 2zpa_A | 671 | Uncharacterized protein YPFI; RNA modification enz | 96.91 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 96.91 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 96.87 | |
| 3u4q_A | 1232 | ATP-dependent helicase/nuclease subunit A; helicas | 96.84 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 96.78 | |
| 1uaa_A | 673 | REP helicase, protein (ATP-dependent DNA helicase | 96.72 | |
| 1pjr_A | 724 | PCRA; DNA repair, DNA replication, SOS response, h | 96.71 | |
| 1a5t_A | 334 | Delta prime, HOLB; zinc finger, DNA replication; 2 | 96.69 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 96.66 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 96.65 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 96.49 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 96.44 | |
| 1g5t_A | 196 | COB(I)alamin adenosyltransferase; P-loop protein, | 96.41 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 96.32 | |
| 3u61_B | 324 | DNA polymerase accessory protein 44; AAA+, ATP hyd | 96.16 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 96.11 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 96.07 | |
| 1z5z_A | 271 | Helicase of the SNF2/RAD54 family; hydrolase, reco | 96.04 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 95.97 | |
| 2bjv_A | 265 | PSP operon transcriptional activator; AAA, transcr | 95.95 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 95.94 | |
| 1sxj_A | 516 | Activator 1 95 kDa subunit; clamp loader, processi | 95.92 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 95.86 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 95.85 | |
| 1iqp_A | 327 | RFCS; clamp loader, extended AAA-ATPase domain, co | 95.79 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 95.65 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 95.64 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 95.64 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 95.44 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 95.43 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 95.42 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 95.37 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 95.33 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 95.27 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 95.19 | |
| 3pvs_A | 447 | Replication-associated recombination protein A; ma | 95.18 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 95.14 | |
| 1w5s_A | 412 | Origin recognition complex subunit 2 ORC2; replica | 95.14 | |
| 3pfi_A | 338 | Holliday junction ATP-dependent DNA helicase RUVB; | 95.13 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 95.13 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 95.12 | |
| 1ojl_A | 304 | Transcriptional regulatory protein ZRAR; response | 95.08 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 95.08 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 95.07 | |
| 2gno_A | 305 | DNA polymerase III, gamma subunit-related protein; | 95.06 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 95.06 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 95.0 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 94.99 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 94.91 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 94.85 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 94.81 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 94.78 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 94.69 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 94.62 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 94.59 | |
| 1hqc_A | 324 | RUVB; extended AAA-ATPase domain, complex with nuc | 94.33 | |
| 1sxj_B | 323 | Activator 1 37 kDa subunit; clamp loader, processi | 94.33 | |
| 1jr3_A | 373 | DNA polymerase III subunit gamma; processivity, pr | 94.2 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 94.19 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 93.99 | |
| 1e9r_A | 437 | Conjugal transfer protein TRWB; coupling protein, | 93.93 | |
| 3hu3_A | 489 | Transitional endoplasmic reticulum ATPase; VCP, tr | 93.72 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 93.67 | |
| 4b4t_I | 437 | 26S protease regulatory subunit 4 homolog; hydrola | 93.66 | |
| 2zan_A | 444 | Vacuolar protein sorting-associating protein 4B; S | 93.64 | |
| 2fna_A | 357 | Conserved hypothetical protein; structural genomic | 93.16 | |
| 2chq_A | 319 | Replication factor C small subunit; DNA-binding pr | 93.0 | |
| 3pxi_A | 758 | Negative regulator of genetic competence CLPC/MEC; | 92.92 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 92.9 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 92.84 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 92.49 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 92.36 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 92.29 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 92.21 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 91.97 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 91.95 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 91.88 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 91.69 | |
| 2l8b_A | 189 | Protein TRAI, DNA helicase I; RECD, hydrolase; NMR | 91.67 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 91.59 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 91.47 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 91.32 | |
| 3hjh_A | 483 | Transcription-repair-coupling factor; MFD, mutatio | 90.68 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 90.52 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 90.47 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 90.25 | |
| 2r8r_A | 228 | Sensor protein; KDPD, PFAM02702, MCSG, structural | 89.8 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 89.79 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 89.75 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 89.09 | |
| 3io5_A | 333 | Recombination and repair protein; storage dimer, i | 89.07 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 89.0 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 88.65 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 88.6 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 88.37 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 88.29 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 88.29 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 88.13 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 88.11 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 88.0 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 87.74 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 87.55 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 87.3 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 87.27 | |
| 3cf2_A | 806 | TER ATPase, transitional endoplasmic reticulum ATP | 87.26 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 87.19 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 86.85 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 86.62 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 86.62 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 86.6 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 86.59 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 86.59 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 86.54 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 86.43 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 86.35 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 86.3 | |
| 2r44_A | 331 | Uncharacterized protein; putative ATPase, structur | 85.96 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 85.94 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 85.73 | |
| 3nbx_X | 500 | ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu | 85.51 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 85.44 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 85.4 | |
| 3hws_A | 363 | ATP-dependent CLP protease ATP-binding subunit CL; | 85.4 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 85.39 | |
| 3u4q_B | 1166 | ATP-dependent helicase/deoxyribonuclease subunit; | 85.39 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 85.36 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 85.35 | |
| 4a15_A | 620 | XPD helicase, ATP-dependent DNA helicase TA0057; h | 85.31 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 85.08 | |
| 1fuk_A | 165 | Eukaryotic initiation factor 4A; helicase, DEAD-bo | 84.99 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 84.99 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 84.81 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 84.78 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 84.76 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 84.56 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 84.56 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 84.53 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 84.51 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 84.42 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 84.31 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 84.08 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 84.05 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 84.05 | |
| 2jgn_A | 185 | DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp | 84.04 | |
| 2hjv_A | 163 | ATP-dependent RNA helicase DBPA; parallel alpha-be | 83.98 | |
| 1c9k_A | 180 | COBU, adenosylcobinamide kinase; alpha/beta struct | 83.98 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 83.92 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 83.74 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 83.74 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 83.73 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 83.71 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 83.57 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 83.52 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 83.5 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 83.45 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 83.43 | |
| 2r2a_A | 199 | Uncharacterized protein; zonular occludens toxin, | 83.39 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 83.27 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 83.25 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 83.18 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 83.17 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 83.14 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 83.11 | |
| 1tue_A | 212 | Replication protein E1; helicase, replication, E1E | 82.97 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 82.83 | |
| 4akg_A | 2695 | Glutathione S-transferase class-MU 26 kDa isozyme | 82.82 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 82.71 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 82.62 | |
| 1w36_B | 1180 | RECB, exodeoxyribonuclease V beta chain; recombina | 82.62 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 82.49 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 82.45 | |
| 3eaq_A | 212 | Heat resistant RNA dependent ATPase; DEAD box RNA | 82.36 | |
| 4b4t_H | 467 | 26S protease regulatory subunit 7 homolog; hydrola | 82.21 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 81.83 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 81.45 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 81.35 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 81.32 | |
| 3fkq_A | 373 | NTRC-like two-domain protein; RER070207001320, str | 81.31 | |
| 2rb4_A | 175 | ATP-dependent RNA helicase DDX25; rossmann fold, s | 81.31 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 80.97 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 80.97 | |
| 1um8_A | 376 | ATP-dependent CLP protease ATP-binding subunit CL; | 80.72 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 80.55 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 80.49 | |
| 1u0j_A | 267 | DNA replication protein; AAA+ protein, P-loop atpa | 80.42 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 80.24 | |
| 3t0q_A | 349 | AGR253WP; kinesin, alpha and beta proteins, P-loop | 80.23 | |
| 3nwn_A | 359 | Kinesin-like protein KIF9; motor domain, ADP, stru | 80.17 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 80.13 | |
| 1f9v_A | 347 | Kinesin-like protein KAR3; kinesin-related protein | 80.08 |
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-42 Score=369.13 Aligned_cols=361 Identities=62% Similarity=1.052 Sum_probs=297.5
Q ss_pred chhceeccCCCCCccccccccc-CCCCccCCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEE
Q psy6275 26 EACLHEVALPPDLEYQPLAQSK-EKPAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVI 104 (391)
Q Consensus 26 ~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vl 104 (391)
..|...+.+|..+...++++.+ ......++|+|+++|.++++.+.++++++++||||+|||++|.++++..+..+.+++
T Consensus 54 ~~~~h~~~~p~~~~~~~~~~~~~p~~~~~~~f~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~g~rvL 133 (1010)
T 2xgj_A 54 HQVRHQVALPPNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVI 133 (1010)
T ss_dssp EEEEEEEECCTTCCCCCGGGCCCSSCSCCCSSCCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHTTCEEE
T ss_pred cCceeeecCCCCcccCCCCcccChhhHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhccCCeEE
Confidence 4566677777777666666655 333777899999999999999999999999999999999999999999988899999
Q ss_pred EEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhH
Q psy6275 105 YTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVW 184 (391)
Q Consensus 105 vl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~ 184 (391)
|++|+++|+.|++..+.+.++.+++++|+...+.+++|+|+||+++.+++.+....++++++||+||+|.+.+++++..+
T Consensus 134 ~l~PtkaLa~Q~~~~l~~~~~~vglltGd~~~~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~ 213 (1010)
T 2xgj_A 134 YTSPIKALSNQKYRELLAEFGDVGLMTGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVW 213 (1010)
T ss_dssp EEESSHHHHHHHHHHHHHHHSCEEEECSSCEECTTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHH
T ss_pred EECChHHHHHHHHHHHHHHhCCEEEEeCCCccCCCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHH
Confidence 99999999999999999999999999999999999999999999999998887778899999999999999999899999
Q ss_pred HHHHHHhCCCCcEEEEcccCCChHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCc-hhhhhchHHH
Q psy6275 185 EETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDN-KFKEHNYQVA 263 (391)
Q Consensus 185 ~~i~~~~~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~ 263 (391)
+.++..++.+.|+++||||+++..++++|+......++.++....++.+++++++..+.+.++..++.. .+....+...
T Consensus 214 e~il~~l~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (1010)
T 2xgj_A 214 EETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKA 293 (1010)
T ss_dssp HHHHHHSCTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHH
T ss_pred HHHHHhcCCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEEecCCcceeeeeccccccchHHHHHH
Confidence 999999999999999999999998999999877778899999999999999999887767777766654 4555555555
Q ss_pred HHHhhhhhhhhccCCCCCCCCCCC-CCC-----CcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCChHH
Q psy6275 264 MNVLANAGDAAKAGDHKGGRKGGP-KGG-----VQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNETEE 337 (391)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~~~~ 337 (391)
+..+.............+++.... ++. ....+..+++.+...+..++||||+|++.|+.++..|...++....+
T Consensus 294 ~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e 373 (1010)
T 2xgj_A 294 MASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDE 373 (1010)
T ss_dssp HHTCC------------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHH
T ss_pred HHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHH
Confidence 444332100000000001110000 110 03456778888877777799999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcchhhccCcchHhHHHHHHhhhhhccCCCCccccc
Q psy6275 338 VKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRGIGIHHGVKPYGLWQ 386 (391)
Q Consensus 338 r~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~~~~~~~r~ 386 (391)
+..+...+.+.+..+...|..++++..+..++.+||++|||||+...|+
T Consensus 374 ~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~ 422 (1010)
T 2xgj_A 374 KEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKE 422 (1010)
T ss_dssp HHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHH
T ss_pred HHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHH
Confidence 9999999999999999999999999999999999999999999988775
|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-43 Score=372.95 Aligned_cols=356 Identities=62% Similarity=1.046 Sum_probs=291.1
Q ss_pred eccCCCCCcccccccccCCCC-ccCCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEccc
Q psy6275 31 EVALPPDLEYQPLAQSKEKPA-REYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPI 109 (391)
Q Consensus 31 ~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~ 109 (391)
....+..|...++++.+...+ ..++|+|+++|.++++.+.++++++++||||||||++|.+|++..+..+++++|++|+
T Consensus 157 ~~~~~~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~Pt 236 (1108)
T 3l9o_A 157 QVALPPNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPI 236 (1108)
T ss_dssp EECCSSCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCCCCCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCc
Confidence 344566788888888776654 4456679999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHH
Q psy6275 110 KALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLI 189 (391)
Q Consensus 110 ~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~ 189 (391)
++|+.|++..+.+.++.+++++|+...+.+++|+|+||++|.+++.+....++++++||+||||++.+++++..++.++.
T Consensus 237 raLa~Q~~~~l~~~~~~VglltGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~ 316 (1108)
T 3l9o_A 237 KALSNQKYRELLAEFGDVGLMTGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETII 316 (1108)
T ss_dssp HHHHHHHHHHHHHHTSSEEEECSSCBCCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCccEEeCccccCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988877788999999999999999999999999999
Q ss_pred HhCCCCcEEEEcccCCChHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCc-hhhhhchHHHHHHhh
Q psy6275 190 LLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDN-KFKEHNYQVAMNVLA 268 (391)
Q Consensus 190 ~~~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~ 268 (391)
.++...|+++||||+++..+++.|++.....++.++....++.+++++++....+.++..++.. .+....+...+..+.
T Consensus 317 ~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~ 396 (1108)
T 3l9o_A 317 LLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASIS 396 (1108)
T ss_dssp HSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC-
T ss_pred hcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHH
Confidence 9999999999999999998899999988888999999999999999999887777777766655 555555555554433
Q ss_pred hhhhhhccCCCCCCC--CC----CCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCChHHHHHHH
Q psy6275 269 NAGDAAKAGDHKGGR--KG----GPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNETEEVKLVD 342 (391)
Q Consensus 269 ~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~~~~r~~~~ 342 (391)
............++. +. ..+......+..++..+...+..++||||++++.|+.++..|...++....++..+.
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~ 476 (1108)
T 3l9o_A 397 NQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALT 476 (1108)
T ss_dssp ----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHH
T ss_pred hhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 211100000000000 00 001111345667777777777789999999999999999999998888888888888
Q ss_pred HHHHHHhhhcchhhccCcchHhHHHHHHhhhhhccCCCCccccc
Q psy6275 343 DVFSNAMDVLSEEDRKLPQIENILPLLRRGIGIHHGVKPYGLWQ 386 (391)
Q Consensus 343 ~~~~~~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~~~~~~~r~ 386 (391)
..+.+.+..+...|..++++..+...+.+||++||+||+...|.
T Consensus 477 ~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~ 520 (1108)
T 3l9o_A 477 KIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKE 520 (1108)
T ss_dssp HHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHH
T ss_pred HHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHH
Confidence 88888888888899999999999999999999999999987765
|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-40 Score=347.69 Aligned_cols=344 Identities=44% Similarity=0.758 Sum_probs=282.3
Q ss_pred cccccccCCCCccCCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHH
Q psy6275 41 QPLAQSKEKPAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREF 120 (391)
Q Consensus 41 ~~l~~~~~~~~~~~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~ 120 (391)
.+..+.+......++|+|+++|.++++.+.++++++++||||+|||++|++++...+..+.+++|++|+++|+.|+++.+
T Consensus 23 ~~f~~l~~~~~~~~~f~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~g~~vlvl~PtraLa~Q~~~~l 102 (997)
T 4a4z_A 23 ENFDELIPNPARSWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDF 102 (997)
T ss_dssp TTHHHHCSSCSCCCSSCCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHHH
T ss_pred cchhhhhHhHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHH
Confidence 33444455667788999999999999999999999999999999999999999988888999999999999999999999
Q ss_pred HHhcc--cceeeeCCcccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEE
Q psy6275 121 EEQFK--DVGLITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFV 198 (391)
Q Consensus 121 ~~~~~--~v~~~~g~~~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i 198 (391)
.+.+. .++.++|+...+.+++|+|+||+++.+++......+.++++||+||||++.+++++..++.++..++.+.+++
T Consensus 103 ~~~~~~~~v~~l~G~~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~iI 182 (997)
T 4a4z_A 103 KETFDDVNIGLITGDVQINPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFI 182 (997)
T ss_dssp HTTC--CCEEEECSSCEECTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCEEE
T ss_pred HHHcCCCeEEEEeCCCccCCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcccCCCEE
Confidence 99876 8889999999999999999999999999988877788999999999999999999999999999999999999
Q ss_pred EEcccCCChHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCc-hhhhhchHHHHHHhhhhhhhhccC
Q psy6275 199 FLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDN-KFKEHNYQVAMNVLANAGDAAKAG 277 (391)
Q Consensus 199 ~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 277 (391)
+||||+++..++++|++.....++.++....++.+++++++. ...+...++.. .+....+......+..........
T Consensus 183 lLSAT~~n~~ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 260 (997)
T 4a4z_A 183 LLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWA--KKELIPVINQNSEFLEANFRKHKEILNGESAKGAPS 260 (997)
T ss_dssp EEECCCTTHHHHHHHHHHHHTCCEEEEECSSCSSCEEEEEEE--TTEEEEEECTTCCBCHHHHHHHHHHHC---------
T ss_pred EEcCCCCChHHHHHHHhcccCCceEEEecCCCCccceEEEec--CCcchhcccchhhhhHHHHHHHHHHhhccccccccc
Confidence 999999999999999987777889999999999999988875 23344444443 454555544444333211100000
Q ss_pred --------C----C-----CCCC--------CCC---------------------CCCCCcccHHHHHHHHHHcCCCcEE
Q psy6275 278 --------D----H-----KGGR--------KGG---------------------PKGGVQTNCFKIVKMIMERNLAPVI 311 (391)
Q Consensus 278 --------~----~-----~~~~--------~~~---------------------~~~~~~~~~~~l~~~l~~~~~~~~i 311 (391)
. . .++. ++. ........+..+++.+...+..++|
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~I 340 (997)
T 4a4z_A 261 KTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMV 340 (997)
T ss_dssp --------------------------------------------------------CCCCTTHHHHHHHHHHHTTCCSEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCCCCCEE
Confidence 0 0 0000 000 0001234567888888888878999
Q ss_pred EEEcchhhHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhcchhhccCcchHhHHHHHHhhhhhccCCCCccccc
Q psy6275 312 VFSFSKKDCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRGIGIHHGVKPYGLWQ 386 (391)
Q Consensus 312 IF~~t~~~~~~la~~L~~~g~~~~~~r~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~~~~~~~r~ 386 (391)
|||+|++.|+.++..|...++...+++..+...+.+.+..+...|..+++++.+..++.+||.+||+||+...|+
T Consensus 341 VF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~ 415 (997)
T 4a4z_A 341 VFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKE 415 (997)
T ss_dssp EECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHH
T ss_pred EEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987764
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-39 Score=313.95 Aligned_cols=280 Identities=18% Similarity=0.247 Sum_probs=224.9
Q ss_pred CCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc--------CCeEEEE
Q psy6275 36 PDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ--------SQRVIYT 106 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~--------~~~vlvl 106 (391)
.+|..+++++.+.+.+...||. |+++|.++++.+.++++++++||||||||++|++|++..+.. ++++||+
T Consensus 56 ~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil 135 (434)
T 2db3_A 56 QHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIV 135 (434)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEE
T ss_pred CChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEE
Confidence 3688899999999999999998 999999999999999999999999999999999999987632 5689999
Q ss_pred cccHHHHHHHHHHHHHhcc----cceeeeCCccc-------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEeccccc
Q psy6275 107 TPIKALSNQKYREFEEQFK----DVGLITGDVTI-------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYM 175 (391)
Q Consensus 107 ~P~~~L~~q~~~~~~~~~~----~v~~~~g~~~~-------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~ 175 (391)
+||++|+.|+++.++++.. .+..++|+... ...++|+|+||+++.+++.+....+.+++++|+||||++
T Consensus 136 ~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~ 215 (434)
T 2db3_A 136 SPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRM 215 (434)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHH
T ss_pred ecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhhh
Confidence 9999999999999999875 56667777653 346899999999999999888778899999999999999
Q ss_pred CccccchhHHHHHHHh--CCCCcEEEEcccCCChHHHHHHhccccCCCeeEeeeCC--CCcCceEeeccCCCCCeeeeec
Q psy6275 176 RDKERGYVWEETLILL--SDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDY--RPTPLQHYLFPNGGDGIHLIVD 251 (391)
Q Consensus 176 ~~~~~~~~~~~i~~~~--~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~--~~~~i~~~~~~~~~~~~~~~v~ 251 (391)
+++++...+..++..+ +...|+++||||++.. +.++...+..++..+..... ....+.+.++.+...
T Consensus 216 ~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~--~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~------- 286 (434)
T 2db3_A 216 LDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEE--IQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKY------- 286 (434)
T ss_dssp TSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHH--HHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCGG-------
T ss_pred hccCcHHHHHHHHHhcCCCCCceEEEEeccCCHH--HHHHHHHhccCCEEEEeccccccccccceEEEEeCcH-------
Confidence 9999999998888874 5679999999999765 22333344445555443322 223455555443211
Q ss_pred CchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccC
Q psy6275 252 DNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLN 331 (391)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g 331 (391)
.+...+.+.+..... ++||||+|++.|+.+++.|.+.|
T Consensus 287 -----------------------------------------~k~~~l~~~l~~~~~-~~lVF~~t~~~a~~l~~~L~~~~ 324 (434)
T 2db3_A 287 -----------------------------------------AKRSKLIEILSEQAD-GTIVFVETKRGADFLASFLSEKE 324 (434)
T ss_dssp -----------------------------------------GHHHHHHHHHHHCCT-TEEEECSSHHHHHHHHHHHHHTT
T ss_pred -----------------------------------------HHHHHHHHHHHhCCC-CEEEEEeCcHHHHHHHHHHHhCC
Confidence 234466667766654 59999999999999999999876
Q ss_pred CCC--------hHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhcc
Q psy6275 332 FNE--------TEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHH 377 (391)
Q Consensus 332 ~~~--------~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h 377 (391)
+.+ ..+|..+.+.|++ ...+|++|+ ++++|+|+++
T Consensus 325 ~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----------v~~rGlDi~~ 368 (434)
T 2db3_A 325 FPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS-----------VASRGLDIKN 368 (434)
T ss_dssp CCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG-----------GGTSSCCCTT
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch-----------hhhCCCCccc
Confidence 654 3678888888887 567788875 9999999875
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-37 Score=297.47 Aligned_cols=283 Identities=17% Similarity=0.250 Sum_probs=224.4
Q ss_pred CCCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh---cCCeEEEEcccH
Q psy6275 35 PPDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK---QSQRVIYTTPIK 110 (391)
Q Consensus 35 ~~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~---~~~~vlvl~P~~ 110 (391)
..+|+.+++++.+.+.+..+||. |+++|.++++.+.+++++++.+|||+|||++|++|+++.+. .+.++||++|++
T Consensus 36 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~ 115 (410)
T 2j0s_A 36 TPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTR 115 (410)
T ss_dssp CCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSH
T ss_pred CCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcH
Confidence 35789999999999999999998 99999999999999999999999999999999999998764 468999999999
Q ss_pred HHHHHHHHHHHHhcc----cceeeeCCccc-------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccc
Q psy6275 111 ALSNQKYREFEEQFK----DVGLITGDVTI-------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKE 179 (391)
Q Consensus 111 ~L~~q~~~~~~~~~~----~v~~~~g~~~~-------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~ 179 (391)
+|+.|+++.+.++.. .+....|+... ...++|+|+||+++..++......+..++++|+||||++.+++
T Consensus 116 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~ 195 (410)
T 2j0s_A 116 ELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKG 195 (410)
T ss_dssp HHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTSTT
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHhhh
Confidence 999999999998875 44556666543 2357999999999999998877778899999999999999888
Q ss_pred cchhHHHHHHHhCCCCcEEEEcccCCChHHHHHHhccccCCCeeEeeeCC--CCcCceEeeccCCCCCeeeeecCchhhh
Q psy6275 180 RGYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDY--RPTPLQHYLFPNGGDGIHLIVDDNKFKE 257 (391)
Q Consensus 180 ~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~--~~~~i~~~~~~~~~~~~~~~v~~~~~~~ 257 (391)
+...+..++..++...|++++|||+++. +.+++..+...+..+..... ....+.+++..+...
T Consensus 196 ~~~~~~~i~~~~~~~~~~i~~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 260 (410)
T 2j0s_A 196 FKEQIYDVYRYLPPATQVVLISATLPHE--ILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVERE------------- 260 (410)
T ss_dssp THHHHHHHHTTSCTTCEEEEEESCCCHH--HHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESST-------------
T ss_pred hHHHHHHHHHhCccCceEEEEEcCCCHH--HHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcH-------------
Confidence 8888888888888889999999999754 34444445555655543322 222345544432211
Q ss_pred hchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCC---
Q psy6275 258 HNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNE--- 334 (391)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~--- 334 (391)
..+...+.+.+.....+++||||++++.++.+++.|.+.|+.+
T Consensus 261 ----------------------------------~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~ 306 (410)
T 2j0s_A 261 ----------------------------------EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSM 306 (410)
T ss_dssp ----------------------------------THHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEE
T ss_pred ----------------------------------HhHHHHHHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhCCCceEEe
Confidence 0123355555666566799999999999999999999876654
Q ss_pred -----hHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhcc
Q psy6275 335 -----TEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHH 377 (391)
Q Consensus 335 -----~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h 377 (391)
..+|..+.+.|++ ...+|++|+ ++++|||++.
T Consensus 307 h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----------~~~~Gidi~~ 344 (410)
T 2j0s_A 307 HGDMPQKERESIMKEFRSGASRVLISTD-----------VWARGLDVPQ 344 (410)
T ss_dssp CTTSCHHHHHHHHHHHHHTSSCEEEECG-----------GGSSSCCCTT
T ss_pred eCCCCHHHHHHHHHHHHCCCCCEEEECC-----------hhhCcCCccc
Confidence 3678888888887 567778775 8999999964
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-36 Score=293.90 Aligned_cols=279 Identities=16% Similarity=0.156 Sum_probs=215.3
Q ss_pred CCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc----------------
Q psy6275 37 DLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ---------------- 99 (391)
Q Consensus 37 ~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~---------------- 99 (391)
+|+.+++++.+.+.+...||. |+++|.++++.+.++++++++||||+|||++|++|++..+..
T Consensus 16 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 95 (417)
T 2i4i_A 16 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRY 95 (417)
T ss_dssp SGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTT
T ss_pred CHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhcccccccc
Confidence 688899999999999999996 999999999999999999999999999999999999887632
Q ss_pred -----CCeEEEEcccHHHHHHHHHHHHHhcc----cceeeeCCccc-------CCCCCEEEEcHHHHHHHHhcCccccCc
Q psy6275 100 -----SQRVIYTTPIKALSNQKYREFEEQFK----DVGLITGDVTI-------NPSSSCLIMTTEILRNMLYRGSEITRE 163 (391)
Q Consensus 100 -----~~~vlvl~P~~~L~~q~~~~~~~~~~----~v~~~~g~~~~-------~~~~~I~v~Tp~~l~~~l~~~~~~l~~ 163 (391)
++++||++|+++|+.|+++.++++.. .+..++|+... ...++|+|+||+++..++......+..
T Consensus 96 ~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~ 175 (417)
T 2i4i_A 96 GRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDF 175 (417)
T ss_dssp BSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSBCCTT
T ss_pred ccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCCcChhh
Confidence 25799999999999999999998865 45567776543 346899999999999999887777889
Q ss_pred cceEEEecccccCccccchhHHHHHHHh--C--CCCcEEEEcccCCCh-HHHHHHhccccCCCeeEeeeCC--CCcCceE
Q psy6275 164 VGWVIFDEIHYMRDKERGYVWEETLILL--S--DNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVYTDY--RPTPLQH 236 (391)
Q Consensus 164 ~~~lViDE~h~~~~~~~~~~~~~i~~~~--~--~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~~~~~--~~~~i~~ 236 (391)
++++|+||||++.++++...+..++... + ...|++++|||+++. ..+.. .+...+..+..... .+..+.+
T Consensus 176 ~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~ 252 (417)
T 2i4i_A 176 CKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLAR---DFLDEYIFLAVGRVGSTSENITQ 252 (417)
T ss_dssp CCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHH---HHCSSCEEEEEC----CCSSEEE
T ss_pred CcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHH---HHcCCCEEEEeCCCCCCccCceE
Confidence 9999999999998888888888777642 2 268899999999765 33333 23334444433222 2234555
Q ss_pred eeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHc-CCCcEEEEEc
Q psy6275 237 YLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMER-NLAPVIVFSF 315 (391)
Q Consensus 237 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~iIF~~ 315 (391)
.++.++.. .+...+.+.+... ..+++||||+
T Consensus 253 ~~~~~~~~------------------------------------------------~~~~~l~~~l~~~~~~~~~lVf~~ 284 (417)
T 2i4i_A 253 KVVWVEES------------------------------------------------DKRSFLLDLLNATGKDSLTLVFVE 284 (417)
T ss_dssp EEEECCGG------------------------------------------------GHHHHHHHHHHTCCTTCEEEEECS
T ss_pred EEEEeccH------------------------------------------------hHHHHHHHHHHhcCCCCeEEEEEC
Confidence 54433211 2233455555554 3568999999
Q ss_pred chhhHHHHHHHhhccCCCC--------hHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhcc
Q psy6275 316 SKKDCEIYAMQMAKLNFNE--------TEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHH 377 (391)
Q Consensus 316 t~~~~~~la~~L~~~g~~~--------~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h 377 (391)
++++|+.+++.|.+.|+.+ .++|..+.+.|++ ...+|++| +++++|||++.
T Consensus 285 ~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT-----------~~~~~Gidip~ 344 (417)
T 2i4i_A 285 TKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT-----------AVAARGLDISN 344 (417)
T ss_dssp SHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEEC-----------HHHHTTSCCCC
T ss_pred CHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEEC-----------ChhhcCCCccc
Confidence 9999999999998876654 3678888888877 56777777 59999999963
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-36 Score=291.25 Aligned_cols=283 Identities=17% Similarity=0.239 Sum_probs=220.0
Q ss_pred CCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh---cCCeEEEEcccHH
Q psy6275 36 PDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK---QSQRVIYTTPIKA 111 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~---~~~~vlvl~P~~~ 111 (391)
.+|+.+++++.+.+.+..+||. |+++|.++++.+.+++++++.+|||+|||++|++++++.+. .+.+++|++|+++
T Consensus 40 ~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 119 (414)
T 3eiq_A 40 DSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRE 119 (414)
T ss_dssp CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHH
T ss_pred cCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHH
Confidence 4788899999999999999997 99999999999999999999999999999999999998875 4678999999999
Q ss_pred HHHHHHHHHHHhcc----cceeeeCCccc--------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccc
Q psy6275 112 LSNQKYREFEEQFK----DVGLITGDVTI--------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKE 179 (391)
Q Consensus 112 L~~q~~~~~~~~~~----~v~~~~g~~~~--------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~ 179 (391)
|+.|+.+.++++.. .+....|+... ...++|+|+||+++.+.+......+..++++|+||||++.+++
T Consensus 120 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~ 199 (414)
T 3eiq_A 120 LAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRG 199 (414)
T ss_dssp HHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHHHTT
T ss_pred HHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHhhccC
Confidence 99999999999875 34445555442 1567999999999999998877778889999999999998888
Q ss_pred cchhHHHHHHHhCCCCcEEEEcccCCChHHHHHHhccccCCCeeEeeeCCC--CcCceEeeccCCCCCeeeeecCchhhh
Q psy6275 180 RGYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYR--PTPLQHYLFPNGGDGIHLIVDDNKFKE 257 (391)
Q Consensus 180 ~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~--~~~i~~~~~~~~~~~~~~~v~~~~~~~ 257 (391)
+...+..++..++.+.|+++||||+++. ...........+..+...... ...+.++++.....
T Consensus 200 ~~~~~~~~~~~~~~~~~~i~~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 264 (414)
T 3eiq_A 200 FKDQIYDIFQKLNSNTQVVLLSATMPSD--VLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVERE------------- 264 (414)
T ss_dssp THHHHHHHHTTSCTTCEEEEECSCCCHH--HHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSS-------------
T ss_pred cHHHHHHHHHhCCCCCeEEEEEEecCHH--HHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChH-------------
Confidence 8888888888888899999999999755 333333444455554433222 22344444432211
Q ss_pred hchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCCh--
Q psy6275 258 HNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNET-- 335 (391)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~~-- 335 (391)
..+...+...+.....+++||||++++.|+.+++.|.+.++.+.
T Consensus 265 ----------------------------------~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~ 310 (414)
T 3eiq_A 265 ----------------------------------EWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAM 310 (414)
T ss_dssp ----------------------------------TTHHHHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC
T ss_pred ----------------------------------HhHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEe
Confidence 12344666666766778999999999999999999998776653
Q ss_pred ------HHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhccC
Q psy6275 336 ------EEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHG 378 (391)
Q Consensus 336 ------~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~ 378 (391)
.+|..+.+.|++ ..++|++|+ ++++|||++.+
T Consensus 311 h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----------~~~~Gidip~v 349 (414)
T 3eiq_A 311 HGDMDQKERDVIMREFRSGSSRVLITTD-----------LLARGIDVQQV 349 (414)
T ss_dssp ---CHHHHHHHHHHHHSCC---CEEECS-----------SCC--CCGGGC
T ss_pred cCCCCHHHHHHHHHHHHcCCCcEEEECC-----------ccccCCCccCC
Confidence 677888888876 667888885 89999999743
|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-36 Score=329.46 Aligned_cols=322 Identities=24% Similarity=0.340 Sum_probs=228.7
Q ss_pred ccceeEEeeeh-hchhceeccC-------CCCCc----cccc--------ccccCCCCccCCCC-CcHHHHHHHHHHh-c
Q psy6275 14 KACMKVIVVET-LEACLHEVAL-------PPDLE----YQPL--------AQSKEKPAREYPFV-LDPFQKEAILCIE-N 71 (391)
Q Consensus 14 ~~~~~~~~~~~-~~~~~~~~~~-------~~~~~----~~~l--------~~~~~~~~~~~~~~-~~~~Q~~~i~~i~-~ 71 (391)
.|.+.+..+.+ |..|.....+ |..+. .+.+ .....+.+...+|+ |+|+|.++++.+. .
T Consensus 862 p~~~~i~~~sd~w~~~~~~~~~~~~~~~~p~~~~~~t~lldl~plp~s~L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~ 941 (1724)
T 4f92_B 862 PPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNS 941 (1724)
T ss_dssp CSEEEEEEEESSSTTCEEEEEEECTTCCCCCCCCCCCCCCCCCCCBGGGSCCHHHHTTTTTTCSBCCHHHHHHHHHHHSC
T ss_pred CCeEEEEEEEccccCCCceeeeccccccCCCCCCCCCccccCCCCCcccccCHHHHHHHHhcCCCCCHHHHHHHHHHhcC
Confidence 46677777777 7777665442 22111 1111 12223445566787 9999999999885 5
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhc--CCeEEEEcccHHHHHHHHHHHHHhcc-----cceeeeCCcccC----CCC
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQ--SQRVIYTTPIKALSNQKYREFEEQFK-----DVGLITGDVTIN----PSS 140 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~--~~~vlvl~P~~~L~~q~~~~~~~~~~-----~v~~~~g~~~~~----~~~ 140 (391)
++|++++||||||||+++.+|+++.+.+ +++++|++|+++|+.|.+..|++.++ +++.++|+...+ .++
T Consensus 942 ~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~~~~~~ 1021 (1724)
T 4f92_B 942 DDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKG 1021 (1724)
T ss_dssp CSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHHHHHHC
T ss_pred CCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcchhhcCCC
Confidence 7899999999999999999999998753 67999999999999999999987654 577788887654 368
Q ss_pred CEEEEcHHHHHHHHhc--CccccCccceEEEecccccCccccchhHHHHHHHh-------CCCCcEEEEcccCCChHHHH
Q psy6275 141 SCLIMTTEILRNMLYR--GSEITREVGWVIFDEIHYMRDKERGYVWEETLILL-------SDNVRFVFLSATIPNASQFA 211 (391)
Q Consensus 141 ~I~v~Tp~~l~~~l~~--~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~-------~~~~~~i~~SAT~~~~~~~~ 211 (391)
+|+|+|||++..++.+ ....+++++++|+||+|.+.+ .+|..++.++..+ +.+.|+|+||||++|.++++
T Consensus 1022 ~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d-~rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N~~dla 1100 (1724)
T 4f92_B 1022 NIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGG-ENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVA 1100 (1724)
T ss_dssp SEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGS-TTHHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTHHHHH
T ss_pred CEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCC-CCCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCHHHHH
Confidence 9999999999877754 334578999999999998876 4788887766543 56799999999999999999
Q ss_pred HHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCC
Q psy6275 212 QWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGV 291 (391)
Q Consensus 212 ~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (391)
+|++. ....++.+....||++++.++...+. ......+..+..
T Consensus 1101 ~WL~~-~~~~~~~~~~~~RPvpL~~~i~~~~~--------------~~~~~~~~~~~~---------------------- 1143 (1724)
T 4f92_B 1101 HWLGC-SATSTFNFHPNVRPVPLELHIQGFNI--------------SHTQTRLLSMAK---------------------- 1143 (1724)
T ss_dssp HHHTC-CSTTEEECCGGGCSSCEEEEEEEECC--------------CSHHHHHHTTHH----------------------
T ss_pred HHhCC-CCCCeEEeCCCCCCCCeEEEEEeccC--------------CCchhhhhhhcc----------------------
Confidence 99974 34567788889999999988764322 122222222211
Q ss_pred cccHHHHHHHH-HHcCCCcEEEEEcchhhHHHHHHHhhccCCCChHHHHH---HHHHHHHHhhhcchhhccCcchHhHHH
Q psy6275 292 QTNCFKIVKMI-MERNLAPVIVFSFSKKDCEIYAMQMAKLNFNETEEVKL---VDDVFSNAMDVLSEEDRKLPQIENILP 367 (391)
Q Consensus 292 ~~~~~~l~~~l-~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~~~~r~~---~~~~~~~~~~~l~~~d~~~~~~~~~~~ 367 (391)
.+...+ .....+++||||+||+.|+.+|..|........+.+.. ..+........+. ...+.+
T Consensus 1144 -----~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--------d~~L~~ 1210 (1724)
T 4f92_B 1144 -----PVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLS--------DSTLKE 1210 (1724)
T ss_dssp -----HHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCC--------CHHHHH
T ss_pred -----hHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcc--------cHHHHH
Confidence 122222 22446799999999999999999886532111100000 0111222222222 245778
Q ss_pred HHHhhhhhccCCCCccccc
Q psy6275 368 LLRRGIGIHHGVKPYGLWQ 386 (391)
Q Consensus 368 ~l~~GI~~~h~~~~~~~r~ 386 (391)
++.+||++|||||+..+|+
T Consensus 1211 ~l~~GIa~hHagL~~~~R~ 1229 (1724)
T 4f92_B 1211 TLLNGVGYLHEGLSPMERR 1229 (1724)
T ss_dssp HHHTTEEEECTTSCHHHHH
T ss_pred HHhCCEEEECCCCCHHHHH
Confidence 9999999999999988875
|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-36 Score=333.92 Aligned_cols=282 Identities=24% Similarity=0.342 Sum_probs=209.6
Q ss_pred CCC-CcHHHHHHHHHH-hcCCcEEEEecCCcchHHHHHHHHHHHHhc-----------CCeEEEEcccHHHHHHHHHHHH
Q psy6275 55 PFV-LDPFQKEAILCI-ENNQSVLVSAHTSAGKTVVAEYAIASSLKQ-----------SQRVIYTTPIKALSNQKYREFE 121 (391)
Q Consensus 55 ~~~-~~~~Q~~~i~~i-~~~~~~li~apTGsGKT~~~~~~~~~~l~~-----------~~~vlvl~P~~~L~~q~~~~~~ 121 (391)
||+ |+++|.++++.+ .+++|++++||||||||+++.+++++.+.+ +.++||++|+++|+.|+++.|+
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 687 999999999976 568999999999999999999999998842 5789999999999999999999
Q ss_pred Hhcc----cceeeeCCcccCC----CCCEEEEcHHHHHHHHhcCc--cccCccceEEEecccccCccccchhHHHHHHH-
Q psy6275 122 EQFK----DVGLITGDVTINP----SSSCLIMTTEILRNMLYRGS--EITREVGWVIFDEIHYMRDKERGYVWEETLIL- 190 (391)
Q Consensus 122 ~~~~----~v~~~~g~~~~~~----~~~I~v~Tp~~l~~~l~~~~--~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~- 190 (391)
+.++ .|+.++|+..... .++|+|+|||++..++.+.. ..++++++||+||+|.+.+ .+|..++.++.+
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l~rl 234 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALVARA 234 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCTTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCccccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHHHHH
Confidence 8876 5677899887654 47999999999877765543 3578999999999998866 689988876653
Q ss_pred ------hCCCCcEEEEcccCCChHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHH
Q psy6275 191 ------LSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAM 264 (391)
Q Consensus 191 ------~~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 264 (391)
++...|+|+||||++|.+++++|++.......+++....||++++++++.+.... .....
T Consensus 235 ~~~~~~~~~~~riI~LSATl~N~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~--------------~~~~~ 300 (1724)
T 4f92_B 235 IRNIEMTQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKK--------------AIKRF 300 (1724)
T ss_dssp HHHHHHHTCCCEEEEEECSCTTHHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCC--------------HHHHH
T ss_pred HHHHHhCCCCCcEEEEecccCCHHHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcc--------------hhhhh
Confidence 4678999999999999999999998655556778888899999998876443211 11111
Q ss_pred HHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHH-cCCCcEEEEEcchhhHHHHHHHhhccCCCChH------H
Q psy6275 265 NVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIME-RNLAPVIVFSFSKKDCEIYAMQMAKLNFNETE------E 337 (391)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~iIF~~t~~~~~~la~~L~~~g~~~~~------~ 337 (391)
..+.. .+...+.+ ..++++||||+||+.|+.+|+.|.+....... .
T Consensus 301 ~~~~~---------------------------~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~ 353 (1724)
T 4f92_B 301 QIMNE---------------------------IVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLRE 353 (1724)
T ss_dssp HHHHH---------------------------HHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSC
T ss_pred HHHHH---------------------------HHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhccc
Confidence 11110 12222222 23568999999999999999999753211100 0
Q ss_pred HHHHHHHHHHHhhhcchhhccCcchHhHHHHHHhhhhhccCCCCccccc
Q psy6275 338 VKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRGIGIHHGVKPYGLWQ 386 (391)
Q Consensus 338 r~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~~~~~~~r~ 386 (391)
.....+.+. .+........+.+++.+||++|||||+..+|.
T Consensus 354 ~~~~~~~~~--------~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~ 394 (1724)
T 4f92_B 354 GSASTEVLR--------TEAEQCKNLELKDLLPYGFAIHHAGMTRVDRT 394 (1724)
T ss_dssp CTTCSSHHH--------HTTSCCSTHHHHHHTTTTEEEECSSSCTHHHH
T ss_pred chhHHHHHH--------hhhcccccHHHHHHhhcCEEEEcCCCCHHHHH
Confidence 000001111 11222334568899999999999999998885
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-36 Score=288.91 Aligned_cols=281 Identities=20% Similarity=0.239 Sum_probs=219.8
Q ss_pred CCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh---cCCeEEEEcccHH
Q psy6275 36 PDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK---QSQRVIYTTPIKA 111 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~---~~~~vlvl~P~~~ 111 (391)
.+|+.+++++.+.+.+...||. |+++|.++++.+.+++++++.+|||+|||++|++|++..+. .+.+++|++|+++
T Consensus 21 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 100 (400)
T 1s2m_A 21 NTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRE 100 (400)
T ss_dssp CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHH
Confidence 4789999999999999999998 99999999999999999999999999999999999998875 3568999999999
Q ss_pred HHHHHHHHHHHhcc----cceeeeCCccc-------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCcccc
Q psy6275 112 LSNQKYREFEEQFK----DVGLITGDVTI-------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKER 180 (391)
Q Consensus 112 L~~q~~~~~~~~~~----~v~~~~g~~~~-------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~ 180 (391)
|+.|+++.++++.. .+...+|+... ...++|+|+||+++.+.+......+.+++++|+||||++.+.++
T Consensus 101 L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~ 180 (400)
T 1s2m_A 101 LALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDF 180 (400)
T ss_dssp HHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHHH
T ss_pred HHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhhhch
Confidence 99999999999876 45556666542 35679999999999998887777788999999999999988777
Q ss_pred chhHHHHHHHhCCCCcEEEEcccCCChHHHHHHhccccCCCeeEeeeCC-CCcCceEeeccCCCCCeeeeecCchhhhhc
Q psy6275 181 GYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDY-RPTPLQHYLFPNGGDGIHLIVDDNKFKEHN 259 (391)
Q Consensus 181 ~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~-~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~ 259 (391)
...+..++..++...++++||||++.. +.+++......+..+..... ....+.+++..+..
T Consensus 181 ~~~~~~i~~~~~~~~~~i~lSAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 242 (400)
T 1s2m_A 181 KTIIEQILSFLPPTHQSLLFSATFPLT--VKEFMVKHLHKPYEINLMEELTLKGITQYYAFVEE---------------- 242 (400)
T ss_dssp HHHHHHHHTTSCSSCEEEEEESCCCHH--HHHHHHHHCSSCEEESCCSSCBCTTEEEEEEECCG----------------
T ss_pred HHHHHHHHHhCCcCceEEEEEecCCHH--HHHHHHHHcCCCeEEEeccccccCCceeEEEEech----------------
Confidence 777888888788889999999999755 33333333344444332221 12234444332211
Q ss_pred hHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCC-----
Q psy6275 260 YQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNE----- 334 (391)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~----- 334 (391)
..+...+...+.....+++||||++++.++.+++.|.+.|+.+
T Consensus 243 --------------------------------~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~ 290 (400)
T 1s2m_A 243 --------------------------------RQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHA 290 (400)
T ss_dssp --------------------------------GGHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECT
T ss_pred --------------------------------hhHHHHHHHHHhhcCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecC
Confidence 0223345555666666799999999999999999998865543
Q ss_pred ---hHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhcc
Q psy6275 335 ---TEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHH 377 (391)
Q Consensus 335 ---~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h 377 (391)
..+|..+.+.|++ ...+|++|+ ++++|+|++.
T Consensus 291 ~~~~~~r~~~~~~f~~g~~~vLv~T~-----------~~~~Gidip~ 326 (400)
T 1s2m_A 291 RMKQQERNKVFHEFRQGKVRTLVCSD-----------LLTRGIDIQA 326 (400)
T ss_dssp TSCHHHHHHHHHHHHTTSSSEEEESS-----------CSSSSCCCTT
T ss_pred CCCHHHHHHHHHHHhcCCCcEEEEcC-----------ccccCCCccC
Confidence 4678888888877 567788775 8999999964
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-35 Score=287.26 Aligned_cols=285 Identities=16% Similarity=0.182 Sum_probs=218.3
Q ss_pred CCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcC--CcEEEEecCCcchHHHHHHHHHHHHhc---CCeEEEEccc
Q psy6275 36 PDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENN--QSVLVSAHTSAGKTVVAEYAIASSLKQ---SQRVIYTTPI 109 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~--~~~li~apTGsGKT~~~~~~~~~~l~~---~~~vlvl~P~ 109 (391)
.+|+.+++++.+.+.+.++||. |+++|.++++.+.++ ++++++||||+|||++|++|++..+.. +++++|++|+
T Consensus 25 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 104 (412)
T 3fht_A 25 KSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPT 104 (412)
T ss_dssp SCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred CCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCC
Confidence 4789999999999999999997 999999999999886 899999999999999999999988753 4589999999
Q ss_pred HHHHHHHHHHHHHhcc-----cceeeeCCcccC----CCCCEEEEcHHHHHHHHhc-CccccCccceEEEecccccCc-c
Q psy6275 110 KALSNQKYREFEEQFK-----DVGLITGDVTIN----PSSSCLIMTTEILRNMLYR-GSEITREVGWVIFDEIHYMRD-K 178 (391)
Q Consensus 110 ~~L~~q~~~~~~~~~~-----~v~~~~g~~~~~----~~~~I~v~Tp~~l~~~l~~-~~~~l~~~~~lViDE~h~~~~-~ 178 (391)
++|+.|+++.++++.. .+....++.... ...+|+|+||+++..++.+ ....+.+++++|+||||++.+ .
T Consensus 105 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~ 184 (412)
T 3fht_A 105 YELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQ 184 (412)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcC
Confidence 9999999999998765 344455554432 2468999999999998865 445568999999999999875 5
Q ss_pred ccchhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHHhccccCCCeeEeeeCC--CCcCceEeeccCCCCCeeeeecCchh
Q psy6275 179 ERGYVWEETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVYTDY--RPTPLQHYLFPNGGDGIHLIVDDNKF 255 (391)
Q Consensus 179 ~~~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~~~~~--~~~~i~~~~~~~~~~~~~~~v~~~~~ 255 (391)
++...+..+...++.+.|++++|||+++. ..+... ....+..+..... ....+.+.++.....
T Consensus 185 ~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 250 (412)
T 3fht_A 185 GHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQK---VVPDPNVIKLKREEETLDTIKQYYVLCSSR----------- 250 (412)
T ss_dssp TTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHH---HSSSCEEECCCGGGSSCTTEEEEEEECSSH-----------
T ss_pred CcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHH---hcCCCeEEeeccccccccCceEEEEEcCCh-----------
Confidence 56667777777888889999999999765 334332 3334444332221 222444444432210
Q ss_pred hhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCC-
Q psy6275 256 KEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNE- 334 (391)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~- 334 (391)
..+...+.+.+.....+++||||++++.|+.++..|.+.++.+
T Consensus 251 ------------------------------------~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~ 294 (412)
T 3fht_A 251 ------------------------------------DEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVA 294 (412)
T ss_dssp ------------------------------------HHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHTTCCCE
T ss_pred ------------------------------------HHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCCCeEE
Confidence 0223455666666666799999999999999999999876654
Q ss_pred -------hHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhc------cCCCC
Q psy6275 335 -------TEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIH------HGVKP 381 (391)
Q Consensus 335 -------~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~------h~~~~ 381 (391)
..+|..+.+.|++ ..++|++|+ ++++|||++ |.++|
T Consensus 295 ~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----------~~~~Gidip~~~~Vi~~~~p 344 (412)
T 3fht_A 295 LLSGEMMVEQRAAVIERFREGKEKVLVTTN-----------VCARGIDVEQVSVVINFDLP 344 (412)
T ss_dssp EECTTSCHHHHHHHHHHHHTTSCSEEEECG-----------GGTSSCCCTTEEEEEESSCC
T ss_pred EecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----------ccccCCCccCCCEEEEECCC
Confidence 4778888888887 567778775 899999997 35666
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-35 Score=285.30 Aligned_cols=282 Identities=18% Similarity=0.222 Sum_probs=214.8
Q ss_pred CCCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcC--CcEEEEecCCcchHHHHHHHHHHHHh---cCCeEEEEcc
Q psy6275 35 PPDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENN--QSVLVSAHTSAGKTVVAEYAIASSLK---QSQRVIYTTP 108 (391)
Q Consensus 35 ~~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~--~~~li~apTGsGKT~~~~~~~~~~l~---~~~~vlvl~P 108 (391)
..+|+.+++++.+.+.+...||. |+++|.++++.+.++ +++++++|||+|||++|+++++..+. .+++++|++|
T Consensus 4 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 83 (395)
T 3pey_A 4 AKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAP 83 (395)
T ss_dssp CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECS
T ss_pred ccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECC
Confidence 36789999999999999999997 999999999999887 89999999999999999999998874 4679999999
Q ss_pred cHHHHHHHHHHHHHhcc----cceeeeCCccc---CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCc-ccc
Q psy6275 109 IKALSNQKYREFEEQFK----DVGLITGDVTI---NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRD-KER 180 (391)
Q Consensus 109 ~~~L~~q~~~~~~~~~~----~v~~~~g~~~~---~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~-~~~ 180 (391)
+++|+.|+++.++++.. .+....++... ..+++|+|+||+++...+......+.+++++|+||||++.+ .++
T Consensus 84 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~ 163 (395)
T 3pey_A 84 SRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGL 163 (395)
T ss_dssp SHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCcccc
Confidence 99999999999999875 33444444332 23679999999999999888777788999999999999876 556
Q ss_pred chhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHHhccccCCCeeEeeeC--CCCcCceEeeccCCCCCeeeeecCchhhh
Q psy6275 181 GYVWEETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVYTD--YRPTPLQHYLFPNGGDGIHLIVDDNKFKE 257 (391)
Q Consensus 181 ~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~~~~--~~~~~i~~~~~~~~~~~~~~~v~~~~~~~ 257 (391)
...+..+...++.+.|++++|||+++. ..+...+ ...+..+.... .....+.+.+......
T Consensus 164 ~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 227 (395)
T 3pey_A 164 GDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKI---VPNANTLELQTNEVNVDAIKQLYMDCKNE------------- 227 (395)
T ss_dssp HHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHH---SCSCEEECCCGGGCSCTTEEEEEEECSSH-------------
T ss_pred HHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHh---CCCCeEEEccccccccccccEEEEEcCch-------------
Confidence 667777777788889999999999765 4444432 23333322221 1222334433322110
Q ss_pred hchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCC---
Q psy6275 258 HNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNE--- 334 (391)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~--- 334 (391)
..+...+...+.....+++||||++++.|+.+++.|++.|+.+
T Consensus 228 ----------------------------------~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~ 273 (395)
T 3pey_A 228 ----------------------------------ADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSIL 273 (395)
T ss_dssp ----------------------------------HHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEE
T ss_pred ----------------------------------HHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEe
Confidence 0112234444444556799999999999999999999876654
Q ss_pred -----hHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhcc
Q psy6275 335 -----TEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHH 377 (391)
Q Consensus 335 -----~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h 377 (391)
..+|..+.+.|++ ...+|++|+ ++++|||++.
T Consensus 274 ~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----------~~~~Gidip~ 311 (395)
T 3pey_A 274 HGDLQTQERDRLIDDFREGRSKVLITTN-----------VLARGIDIPT 311 (395)
T ss_dssp CTTSCHHHHHHHHHHHHTTSCCEEEECG-----------GGSSSCCCTT
T ss_pred CCCCCHHHHHHHHHHHHCCCCCEEEECC-----------hhhcCCCccc
Confidence 3678888888887 557777774 8999999973
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-35 Score=283.38 Aligned_cols=280 Identities=19% Similarity=0.231 Sum_probs=217.7
Q ss_pred CCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc---CCeEEEEcccHH
Q psy6275 36 PDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ---SQRVIYTTPIKA 111 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~---~~~vlvl~P~~~ 111 (391)
.+|+.+++++.+.+.+..+||. |+++|.++++.+.+++++++.+|||+|||++|++|++..+.. +.+++|++|+++
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~ 87 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 87 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHH
Confidence 4688899999999999999998 999999999999999999999999999999999999988643 569999999999
Q ss_pred HHHHHHHHHHHhcc-----cceeeeCCcccC--------CCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCcc
Q psy6275 112 LSNQKYREFEEQFK-----DVGLITGDVTIN--------PSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDK 178 (391)
Q Consensus 112 L~~q~~~~~~~~~~-----~v~~~~g~~~~~--------~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~ 178 (391)
|+.|+.+.+.++.. .+..++|+.... ..++|+|+||+++..++......+.+++++|+||||++.++
T Consensus 88 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~ 167 (391)
T 1xti_A 88 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQ 167 (391)
T ss_dssp HHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSS
T ss_pred HHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhc
Confidence 99999999998853 566677765532 24799999999999988877777889999999999998763
Q ss_pred -ccchhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHHhccccCCCeeEeeeCCC---CcCceEeeccCCCCCeeeeecCc
Q psy6275 179 -ERGYVWEETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVYTDYR---PTPLQHYLFPNGGDGIHLIVDDN 253 (391)
Q Consensus 179 -~~~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~~~~~~---~~~i~~~~~~~~~~~~~~~v~~~ 253 (391)
++...+..++...+...|++++|||+++. ..+.. .....+..+...... ...+.+++.....
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 234 (391)
T 1xti_A 168 LDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR---KFMQDPMEIFVDDETKLTLHGLQQYYVKLKD---------- 234 (391)
T ss_dssp HHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHH---HHCSSCEEEECCCCCCCCCTTCEEEEEECCG----------
T ss_pred cchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHH---HHcCCCeEEEecCccccCcccceEEEEEcCc----------
Confidence 55566667777777789999999999876 33333 233455544433322 1234444432221
Q ss_pred hhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCC
Q psy6275 254 KFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFN 333 (391)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~ 333 (391)
..+...+.+.+.....+++||||++++.|+.+++.|.+.|+.
T Consensus 235 --------------------------------------~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~ 276 (391)
T 1xti_A 235 --------------------------------------NEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFP 276 (391)
T ss_dssp --------------------------------------GGHHHHHHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHTTCC
T ss_pred --------------------------------------hhHHHHHHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhCCCc
Confidence 022345566666667789999999999999999999887654
Q ss_pred C--------hHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhcc
Q psy6275 334 E--------TEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHH 377 (391)
Q Consensus 334 ~--------~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h 377 (391)
+ .++|..+.+.|++ ...+|++|+ ++++|+|++.
T Consensus 277 ~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----------~~~~Gidi~~ 318 (391)
T 1xti_A 277 AIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----------LFGRGMDIER 318 (391)
T ss_dssp EEEECTTSCHHHHHHHHHHHHTTCCSEEEESC-----------CCSSCBCCTT
T ss_pred EEEEeCCCCHHHHHHHHHHHhcCCCcEEEECC-----------hhhcCCCccc
Confidence 3 3678888888877 567777775 8899999974
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-36 Score=296.45 Aligned_cols=281 Identities=16% Similarity=0.188 Sum_probs=150.7
Q ss_pred CCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcC--CcEEEEecCCcchHHHHHHHHHHHHhcC---CeEEEEccc
Q psy6275 36 PDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENN--QSVLVSAHTSAGKTVVAEYAIASSLKQS---QRVIYTTPI 109 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~--~~~li~apTGsGKT~~~~~~~~~~l~~~---~~vlvl~P~ 109 (391)
.+|..+++++.+.+.+..+||. |+++|.++++.+..+ ++++++||||||||++|++|++..+..+ +++||++|+
T Consensus 92 ~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt 171 (479)
T 3fmp_B 92 KSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPT 171 (479)
T ss_dssp CCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSS
T ss_pred CCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeCh
Confidence 3688889999999999999997 999999999999876 8999999999999999999999887543 489999999
Q ss_pred HHHHHHHHHHHHHhcc-----cceeeeCCcccC----CCCCEEEEcHHHHHHHHhc-CccccCccceEEEecccccCc-c
Q psy6275 110 KALSNQKYREFEEQFK-----DVGLITGDVTIN----PSSSCLIMTTEILRNMLYR-GSEITREVGWVIFDEIHYMRD-K 178 (391)
Q Consensus 110 ~~L~~q~~~~~~~~~~-----~v~~~~g~~~~~----~~~~I~v~Tp~~l~~~l~~-~~~~l~~~~~lViDE~h~~~~-~ 178 (391)
++|+.|++..++++.. .+....++.... ...+|+|+||+++.+++.+ ....+.++++||+||||++.+ .
T Consensus 172 ~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~ 251 (479)
T 3fmp_B 172 YELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQ 251 (479)
T ss_dssp HHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTST
T ss_pred HHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcC
Confidence 9999999988888764 344455544432 2468999999999998865 345568999999999999875 4
Q ss_pred ccchhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHHhccccCCCeeEeeeCC--CCcCceEeeccCCCCCeeeeecCchh
Q psy6275 179 ERGYVWEETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVYTDY--RPTPLQHYLFPNGGDGIHLIVDDNKF 255 (391)
Q Consensus 179 ~~~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~~~~~--~~~~i~~~~~~~~~~~~~~~v~~~~~ 255 (391)
++...+..+...++.+.|++++|||+++. ..++.. ....+..+..... ....+.++++.++..
T Consensus 252 ~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~----------- 317 (479)
T 3fmp_B 252 GHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQK---VVPDPNVIKLKREEETLDTIKQYYVLCSSR----------- 317 (479)
T ss_dssp THHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHH---HSSSEEEEEEC------------------------------
T ss_pred CcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHH---HcCCCeEEeccccccCcCCceEEEEEeCCH-----------
Confidence 56666667777788889999999999876 444443 3334444333222 122344443332211
Q ss_pred hhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCCh
Q psy6275 256 KEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNET 335 (391)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~~ 335 (391)
..+...+...+......++||||++++.|+.++..|...++.+.
T Consensus 318 ------------------------------------~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~ 361 (479)
T 3fmp_B 318 ------------------------------------DEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVA 361 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------------------------------HHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhCCccEE
Confidence 01223444444444556899999999999999999988765543
Q ss_pred --------HHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhcc
Q psy6275 336 --------EEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHH 377 (391)
Q Consensus 336 --------~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h 377 (391)
.+|..+.+.|++ ..++|++| +++++|||+++
T Consensus 362 ~lh~~~~~~~R~~~~~~f~~g~~~iLv~T-----------~~~~~GlDip~ 401 (479)
T 3fmp_B 362 LLSGEMMVEQRAAVIERFREGKEKVLVTT-----------NVCARGIDVEQ 401 (479)
T ss_dssp ---------------------------------------------------
T ss_pred EecCCCCHHHHHHHHHHHHcCCCcEEEEc-----------cccccCCcccc
Confidence 567777777776 55666655 69999999974
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-34 Score=298.78 Aligned_cols=308 Identities=27% Similarity=0.370 Sum_probs=225.2
Q ss_pred CCCcccccccccCCCCccCCCC-CcHHHHHHHHH-HhcCCcEEEEecCCcchHHHHHHHHHHHHh-cCCeEEEEcccHHH
Q psy6275 36 PDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILC-IENNQSVLVSAHTSAGKTVVAEYAIASSLK-QSQRVIYTTPIKAL 112 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~-i~~~~~~li~apTGsGKT~~~~~~~~~~l~-~~~~vlvl~P~~~L 112 (391)
.+|+.+++++.+.+.++..||. |+++|.++++. +.++++++++||||||||+++.+++++.+. .+++++|++|+++|
T Consensus 8 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~L 87 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRAL 87 (715)
T ss_dssp CBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHH
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHH
Confidence 4688899999999999999996 99999999998 788999999999999999999999988765 78999999999999
Q ss_pred HHHHHHHHHHhcc---cceeeeCCcccCC----CCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHH
Q psy6275 113 SNQKYREFEEQFK---DVGLITGDVTINP----SSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWE 185 (391)
Q Consensus 113 ~~q~~~~~~~~~~---~v~~~~g~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~ 185 (391)
+.|++++++.+.. .++..+|+..... .++|+|+||+++..++.+....+++++++|+||+|++.+..++..++
T Consensus 88 a~q~~~~~~~~~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~~~~~l~ 167 (715)
T 2va8_A 88 TNEKYLTFKDWELIGFKVAMTSGDYDTDDAWLKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPERGPVVE 167 (715)
T ss_dssp HHHHHHHHGGGGGGTCCEEECCSCSSSCCGGGGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCTTTHHHHH
T ss_pred HHHHHHHHHHhhcCCCEEEEEeCCCCCchhhcCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCcccchHHH
Confidence 9999999954432 6777888766543 68999999999999888877778999999999999998878898999
Q ss_pred HHHHHhCCCCcEEEEcccCCChHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHH
Q psy6275 186 ETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMN 265 (391)
Q Consensus 186 ~i~~~~~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 265 (391)
.++..++ +.|+++||||+++..++++|++. ..+....++.+++..++..+.......+ .|..... .
T Consensus 168 ~i~~~~~-~~~ii~lSATl~n~~~~~~~l~~------~~~~~~~r~~~l~~~~~~~~~~~~~~~~---~~~~~~~----~ 233 (715)
T 2va8_A 168 SVTIRAK-RRNLLALSATISNYKQIAKWLGA------EPVATNWRPVPLIEGVIYPERKKKEYNV---IFKDNTT----K 233 (715)
T ss_dssp HHHHHHH-TSEEEEEESCCTTHHHHHHHHTC------EEEECCCCSSCEEEEEEEECSSTTEEEE---EETTSCE----E
T ss_pred HHHHhcc-cCcEEEEcCCCCCHHHHHHHhCC------CccCCCCCCCCceEEEEecCCcccceee---ecCcchh----h
Confidence 8888776 79999999999989999999862 3466778888887766542211100000 0000000 0
Q ss_pred HhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCC---ChHHHHHHH
Q psy6275 266 VLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFN---ETEEVKLVD 342 (391)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~---~~~~r~~~~ 342 (391)
.+ . ........+.+.+ . .++++||||+++++|+.++..|.+.... ..++.....
T Consensus 234 ~~-------~--------------~~~~~~~~~~~~~-~-~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~ 290 (715)
T 2va8_A 234 KV-------H--------------GDDAIIAYTLDSL-S-KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEIL 290 (715)
T ss_dssp EE-------E--------------SSSHHHHHHHHHH-T-TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHH
T ss_pred hc-------c--------------cchHHHHHHHHHH-h-cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHH
Confidence 00 0 0001122233333 2 3469999999999999999999875321 222322222
Q ss_pred HHHHHHhhhcchhhccCcchHhHHHHHHhhhhhccCCCCccccc
Q psy6275 343 DVFSNAMDVLSEEDRKLPQIENILPLLRRGIGIHHGVKPYGLWQ 386 (391)
Q Consensus 343 ~~~~~~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~~~~~~~r~ 386 (391)
...+.+. +........+.+++..||.+|||||+..+|+
T Consensus 291 ----~~~~~i~--~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~ 328 (715)
T 2va8_A 291 ----KQLDDIE--EGGSDEKELLKSLISKGVAYHHAGLSKALRD 328 (715)
T ss_dssp ----HHHHTCC--SSCHHHHHHHHHHHTTTEEEECTTSCHHHHH
T ss_pred ----HHHHHhh--hccccccHHHHHHHhcCEEEECCCCCHHHHH
Confidence 2222121 1111122456778889999999999988875
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-35 Score=277.61 Aligned_cols=278 Identities=18% Similarity=0.224 Sum_probs=214.5
Q ss_pred CCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcC-CcEEEEecCCcchHHHHHHHHHHHHhc--CCeEEEEcccHH
Q psy6275 36 PDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENN-QSVLVSAHTSAGKTVVAEYAIASSLKQ--SQRVIYTTPIKA 111 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~-~~~li~apTGsGKT~~~~~~~~~~l~~--~~~vlvl~P~~~ 111 (391)
.+|+.+++++.+...+.+.||. |+++|.++++.+.++ +++++.+|||+|||++++.+++..+.. +.+++|++|+++
T Consensus 6 ~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~ 85 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRE 85 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHH
T ss_pred CchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHH
Confidence 4688899999999999999996 999999999998877 799999999999999999999888754 679999999999
Q ss_pred HHHHHHHHHHHhcc----cceeeeCCcccC------CCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccc
Q psy6275 112 LSNQKYREFEEQFK----DVGLITGDVTIN------PSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERG 181 (391)
Q Consensus 112 L~~q~~~~~~~~~~----~v~~~~g~~~~~------~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~ 181 (391)
|+.|+++.+.++.+ .+...+|+.... ..++|+|+||+++...+......+.+++++|+||||.+.++++.
T Consensus 86 L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~ 165 (367)
T 1hv8_A 86 LAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFI 165 (367)
T ss_dssp HHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTTTH
T ss_pred HHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhhchH
Confidence 99999999999876 445566655432 26899999999999998887777889999999999999887777
Q ss_pred hhHHHHHHHhCCCCcEEEEcccCCChHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchH
Q psy6275 182 YVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQ 261 (391)
Q Consensus 182 ~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~ 261 (391)
..+..++..++...+++++|||+++. ...++......+..+ .......+++.++.....
T Consensus 166 ~~~~~~~~~~~~~~~~i~~SAT~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~----------------- 224 (367)
T 1hv8_A 166 KDVEKILNACNKDKRILLFSATMPRE--ILNLAKKYMGDYSFI--KAKINANIEQSYVEVNEN----------------- 224 (367)
T ss_dssp HHHHHHHHTSCSSCEEEEECSSCCHH--HHHHHHHHCCSEEEE--ECCSSSSSEEEEEECCGG-----------------
T ss_pred HHHHHHHHhCCCCceEEEEeeccCHH--HHHHHHHHcCCCeEE--EecCCCCceEEEEEeChH-----------------
Confidence 77888888888889999999999765 112221222222222 222233445444432210
Q ss_pred HHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCC-------
Q psy6275 262 VAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNE------- 334 (391)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~------- 334 (391)
++...+.+.+. ....++||||+++++++.+++.|.+.|+.+
T Consensus 225 -------------------------------~~~~~l~~~l~-~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 272 (367)
T 1hv8_A 225 -------------------------------ERFEALCRLLK-NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDL 272 (367)
T ss_dssp -------------------------------GHHHHHHHHHC-STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred -------------------------------HHHHHHHHHHh-cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCC
Confidence 22334555554 345689999999999999999999876543
Q ss_pred -hHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhcc
Q psy6275 335 -TEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHH 377 (391)
Q Consensus 335 -~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h 377 (391)
..+|..+.+.|++ ...++++|+ ++++|+|++.
T Consensus 273 ~~~~r~~~~~~f~~~~~~vlv~T~-----------~~~~Gid~~~ 306 (367)
T 1hv8_A 273 SQSQREKVIRLFKQKKIRILIATD-----------VMSRGIDVND 306 (367)
T ss_dssp CHHHHHHHHHHHHTTSSSEEEECT-----------THHHHCCCSC
T ss_pred CHHHHHHHHHHHHcCCCeEEEECC-----------hhhcCCCccc
Confidence 3678888888876 557777774 9999999964
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-34 Score=300.55 Aligned_cols=285 Identities=25% Similarity=0.385 Sum_probs=224.6
Q ss_pred CCcccccccccCCCCccCCCC-CcHHHHHHHHH-HhcCCcEEEEecCCcchHHHHHHHHHHHHh-cCCeEEEEcccHHHH
Q psy6275 37 DLEYQPLAQSKEKPAREYPFV-LDPFQKEAILC-IENNQSVLVSAHTSAGKTVVAEYAIASSLK-QSQRVIYTTPIKALS 113 (391)
Q Consensus 37 ~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~-i~~~~~~li~apTGsGKT~~~~~~~~~~l~-~~~~vlvl~P~~~L~ 113 (391)
+|+.+++++.+.+.++..||. |+++|.++++. +.++++++++||||||||+++.+++++.+. .+++++|++|+++|+
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa 81 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALA 81 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGH
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHH
Confidence 467888999999999999996 99999999998 788999999999999999999999987765 689999999999999
Q ss_pred HHHHHHHHHhcc---cceeeeCCcccCC----CCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHH
Q psy6275 114 NQKYREFEEQFK---DVGLITGDVTINP----SSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEE 186 (391)
Q Consensus 114 ~q~~~~~~~~~~---~v~~~~g~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~ 186 (391)
.|++++++++.. .++.++|+..... +++|+|+||+++..++.+....+++++++|+||+|.+.++.++..++.
T Consensus 82 ~q~~~~~~~l~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ 161 (720)
T 2zj8_A 82 EEKFQEFQDWEKIGLRVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLEV 161 (720)
T ss_dssp HHHHHHTGGGGGGTCCEEEECSCSSCCCGGGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHH
T ss_pred HHHHHHHHHHHhcCCEEEEecCCCCccccccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcccHHHHH
Confidence 999999965433 6778888766543 689999999999998888777788999999999999988889999999
Q ss_pred HHHHhCCCCcEEEEcccCCChHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHH
Q psy6275 187 TLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNV 266 (391)
Q Consensus 187 i~~~~~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 266 (391)
++..++.+.|+++||||+++..++++|++. ..+....+|.+++..++..+ .+.. .....
T Consensus 162 ll~~l~~~~~ii~lSATl~n~~~~~~~l~~------~~~~~~~rp~~l~~~~~~~~--~~~~-------~~~~~------ 220 (720)
T 2zj8_A 162 ILAHMLGKAQIIGLSATIGNPEELAEWLNA------ELIVSDWRPVKLRRGVFYQG--FVTW-------EDGSI------ 220 (720)
T ss_dssp HHHHHBTTBEEEEEECCCSCHHHHHHHTTE------EEEECCCCSSEEEEEEEETT--EEEE-------TTSCE------
T ss_pred HHHHhhcCCeEEEEcCCcCCHHHHHHHhCC------cccCCCCCCCcceEEEEeCC--eeec-------cccch------
Confidence 999887789999999999999999999863 34667778888776654321 0110 00000
Q ss_pred hhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhcc----------------
Q psy6275 267 LANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKL---------------- 330 (391)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~---------------- 330 (391)
. ........+.+.+. .++++||||+++++|+.++..|.+.
T Consensus 221 --------~--------------~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~ 276 (720)
T 2zj8_A 221 --------D--------------RFSSWEELVYDAIR--KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNEL 276 (720)
T ss_dssp --------E--------------ECSSTTHHHHHHHH--TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHH
T ss_pred --------h--------------hhhHHHHHHHHHHh--CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHH
Confidence 0 00012233333333 3469999999999999999998752
Q ss_pred -------------------------CCCChHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhcc
Q psy6275 331 -------------------------NFNETEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHH 377 (391)
Q Consensus 331 -------------------------g~~~~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h 377 (391)
+-...++|..+.+.|++ .++++++|+ ++++|||++.
T Consensus 277 ~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~-----------~l~~Gvdip~ 338 (720)
T 2zj8_A 277 ADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATP-----------TLSAGINTPA 338 (720)
T ss_dssp HHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECS-----------TTGGGCCCCB
T ss_pred HHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECc-----------HhhccCCCCc
Confidence 11234678888888887 668888885 8999999863
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-35 Score=300.75 Aligned_cols=287 Identities=23% Similarity=0.371 Sum_probs=221.5
Q ss_pred CCcccc--cccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHH
Q psy6275 37 DLEYQP--LAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALS 113 (391)
Q Consensus 37 ~~~~~~--l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~ 113 (391)
+|+.++ +++.+.+.++..||+ |+++|.++++.+.++++++++||||||||+++.+++++.+..+++++|++|+++|+
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~r~La 81 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALA 81 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHH
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCcHHHH
Confidence 466677 888888889999995 99999999999999999999999999999999999998888889999999999999
Q ss_pred HHHHHHHHHhcc---cceeeeCCcccCC----CCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHH
Q psy6275 114 NQKYREFEEQFK---DVGLITGDVTINP----SSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEE 186 (391)
Q Consensus 114 ~q~~~~~~~~~~---~v~~~~g~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~ 186 (391)
.|+++.++.+.. .++.++|+..... .++|+|+||+++..++.+....+++++++|+||+|++.+++++..++.
T Consensus 82 ~q~~~~~~~~~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ 161 (702)
T 2p6r_A 82 GEKYESFKKWEKIGLRIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEI 161 (702)
T ss_dssp HHHHHHHTTTTTTTCCEEEECSSCBCCSSCSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHH
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCCCcchhhccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHHHH
Confidence 999999964433 6777888766543 689999999999999888777788999999999999998888998888
Q ss_pred HHHHh---CCCCcEEEEcccCCChHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHH
Q psy6275 187 TLILL---SDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVA 263 (391)
Q Consensus 187 i~~~~---~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 263 (391)
++..+ +++.|+++||||+++..++++|++. .++....++.+++..++..+ ..... +........
T Consensus 162 ll~~l~~~~~~~~ii~lSATl~n~~~~~~~l~~------~~~~~~~r~~~l~~~~~~~~--~~~~~-~~~~~~~~~---- 228 (702)
T 2p6r_A 162 LVTKMRRMNKALRVIGLSATAPNVTEIAEWLDA------DYYVSDWRPVPLVEGVLCEG--TLELF-DGAFSTSRR---- 228 (702)
T ss_dssp HHHHHHHHCTTCEEEEEECCCTTHHHHHHHTTC------EEEECCCCSSCEEEEEECSS--EEEEE-ETTEEEEEE----
T ss_pred HHHHHHhcCcCceEEEECCCcCCHHHHHHHhCC------CcccCCCCCccceEEEeeCC--eeecc-Ccchhhhhh----
Confidence 87765 5689999999999988999999862 35677788888887665322 11110 000000000
Q ss_pred HHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhcc-------------
Q psy6275 264 MNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKL------------- 330 (391)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~------------- 330 (391)
......+.+.+. .++++||||+++++|+.++..|.+.
T Consensus 229 ----------------------------~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~ 278 (702)
T 2p6r_A 229 ----------------------------VKFEELVEECVA--ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKA 278 (702)
T ss_dssp ----------------------------CCHHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHH
T ss_pred ----------------------------hhHHHHHHHHHh--cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHH
Confidence 001223333332 3469999999999999999998742
Q ss_pred -------------------------CCCChHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhcc
Q psy6275 331 -------------------------NFNETEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHH 377 (391)
Q Consensus 331 -------------------------g~~~~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h 377 (391)
+-...++|..+.+.|++ .++++++|+ ++++|||++.
T Consensus 279 i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~-----------~l~~Gidip~ 340 (702)
T 2p6r_A 279 ILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATP-----------TLAAGVNLPA 340 (702)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECS-----------TTTSSSCCCB
T ss_pred HHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECc-----------HHhccCCCCc
Confidence 11223778888888887 668888885 8999999864
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-35 Score=286.08 Aligned_cols=283 Identities=17% Similarity=0.216 Sum_probs=158.4
Q ss_pred CCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh---cCCeEEEEcccHH
Q psy6275 36 PDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK---QSQRVIYTTPIKA 111 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~---~~~~vlvl~P~~~ 111 (391)
..|+.+++++.+.+.+..+||. |+++|.++++.+.+++++++.+|||+|||++|++|++..+. .+++++|++|+++
T Consensus 21 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~ 100 (394)
T 1fuu_A 21 YKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRE 100 (394)
T ss_dssp CSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHH
T ss_pred CChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHH
Confidence 4688999999999999999996 99999999999999999999999999999999999998774 3679999999999
Q ss_pred HHHHHHHHHHHhcc----cceeeeCCcccC------CCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccc
Q psy6275 112 LSNQKYREFEEQFK----DVGLITGDVTIN------PSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERG 181 (391)
Q Consensus 112 L~~q~~~~~~~~~~----~v~~~~g~~~~~------~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~ 181 (391)
|+.|+.+.+.++.. .+..++|+.... ..++|+|+||+++...+......+.+++++|+||||++.++++.
T Consensus 101 L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~~~~~~ 180 (394)
T 1fuu_A 101 LALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFK 180 (394)
T ss_dssp HHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhhCCCcH
Confidence 99999999998875 455667765432 15789999999999988877777889999999999999887788
Q ss_pred hhHHHHHHHhCCCCcEEEEcccCCChHHHHHHhccccCCCeeEeeeCCC--CcCceEeeccCCCCCeeeeecCchhhhhc
Q psy6275 182 YVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYR--PTPLQHYLFPNGGDGIHLIVDDNKFKEHN 259 (391)
Q Consensus 182 ~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~--~~~i~~~~~~~~~~~~~~~v~~~~~~~~~ 259 (391)
..+..++..++...|++++|||+++. +.+++......+..+...... ...+.++++.+....
T Consensus 181 ~~~~~~~~~~~~~~~~i~~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 244 (394)
T 1fuu_A 181 EQIYQIFTLLPPTTQVVLLSATMPND--VLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEE-------------- 244 (394)
T ss_dssp HHHHHHHHHSCTTCEEEEECSSCCHH--HHHHHHHHCCSCEEEEECC---------------------------------
T ss_pred HHHHHHHHhCCCCceEEEEEEecCHH--HHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchh--------------
Confidence 88888888888899999999999765 222222333445444333221 112233322211100
Q ss_pred hHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCCh----
Q psy6275 260 YQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNET---- 335 (391)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~~---- 335 (391)
.+...+...+.....+++||||+++++++.+++.|++.++.+.
T Consensus 245 ---------------------------------~~~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~ 291 (394)
T 1fuu_A 245 ---------------------------------YKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYS 291 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------------------------hHHHHHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeC
Confidence 0112333334444456899999999999999999988765542
Q ss_pred ----HHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhccC
Q psy6275 336 ----EEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHG 378 (391)
Q Consensus 336 ----~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~ 378 (391)
.+|..+.+.|++ ...++++| +++++|+|++..
T Consensus 292 ~~~~~~r~~~~~~f~~~~~~vlv~T-----------~~~~~Gldi~~~ 328 (394)
T 1fuu_A 292 DLPQQERDTIMKEFRSGSSRILIST-----------DLLARGIDVQQV 328 (394)
T ss_dssp ------------------------------------------------
T ss_pred CCCHHHHHHHHHHHHCCCCcEEEEC-----------ChhhcCCCcccC
Confidence 556667777765 44555555 699999999753
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-34 Score=268.11 Aligned_cols=265 Identities=19% Similarity=0.179 Sum_probs=204.5
Q ss_pred ccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHH
Q psy6275 44 AQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEE 122 (391)
Q Consensus 44 ~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~ 122 (391)
++.+.+.++.+||. |+++|.++++.+.+++++++.+|||+|||++++.+++.. +.+++|++|+++|+.|+++.+++
T Consensus 2 ~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~---~~~~liv~P~~~L~~q~~~~~~~ 78 (337)
T 2z0m_A 2 NEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL---GMKSLVVTPTRELTRQVASHIRD 78 (337)
T ss_dssp CHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH---TCCEEEECSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh---cCCEEEEeCCHHHHHHHHHHHHH
Confidence 45566778889997 999999999999999999999999999999999998775 78999999999999999999998
Q ss_pred hcc----cceeeeCCcccC------CCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhC
Q psy6275 123 QFK----DVGLITGDVTIN------PSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLS 192 (391)
Q Consensus 123 ~~~----~v~~~~g~~~~~------~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~ 192 (391)
+.. .+..++|+.... ..++|+|+||+++.+.+......+.+++++|+||||++.++++...+..++...+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~ 158 (337)
T 2z0m_A 79 IGRYMDTKVAEVYGGMPYKAQINRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTS 158 (337)
T ss_dssp HTTTSCCCEEEECTTSCHHHHHHHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHHHHHHHHHHCT
T ss_pred HhhhcCCcEEEEECCcchHHHHhhcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHHHHHHHHhhCC
Confidence 765 556677765431 3589999999999998887766788999999999999988888888888888888
Q ss_pred CCCcEEEEcccCCCh--HHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhhh
Q psy6275 193 DNVRFVFLSATIPNA--SQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANA 270 (391)
Q Consensus 193 ~~~~~i~~SAT~~~~--~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 270 (391)
...+++++|||+++. ..+..++ ..+..+ ........+.+.++.+...
T Consensus 159 ~~~~~~~~SAT~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~-------------------------- 207 (337)
T 2z0m_A 159 NRKITGLFSATIPEEIRKVVKDFI----TNYEEI-EACIGLANVEHKFVHVKDD-------------------------- 207 (337)
T ss_dssp TCSEEEEEESCCCHHHHHHHHHHS----CSCEEE-ECSGGGGGEEEEEEECSSS--------------------------
T ss_pred cccEEEEEeCcCCHHHHHHHHHhc----CCceee-ecccccCCceEEEEEeChH--------------------------
Confidence 889999999999765 2233333 233322 2222233444444432211
Q ss_pred hhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhcc----CCCChHHHHHHHHHHH
Q psy6275 271 GDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKL----NFNETEEVKLVDDVFS 346 (391)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~----g~~~~~~r~~~~~~~~ 346 (391)
....+..+.....+++||||+++++++.+++.|.+. |-....+|..+.+.|+
T Consensus 208 ------------------------~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~r~~~~~~f~ 263 (337)
T 2z0m_A 208 ------------------------WRSKVQALRENKDKGVIVFVRTRNRVAKLVRLFDNAIELRGDLPQSVRNRNIDAFR 263 (337)
T ss_dssp ------------------------SHHHHHHHHTCCCSSEEEECSCHHHHHHHHTTCTTEEEECTTSCHHHHHHHHHHHH
T ss_pred ------------------------HHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHHhhhhhhhcCCCCHHHHHHHHHHHH
Confidence 112334455566789999999999999999999753 3345577888888887
Q ss_pred H-HhhhcchhhccCcchHhHHHHHHhhhhhcc
Q psy6275 347 N-AMDVLSEEDRKLPQIENILPLLRRGIGIHH 377 (391)
Q Consensus 347 ~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h 377 (391)
+ ..+++++| +++++|+|++.
T Consensus 264 ~~~~~vlv~T-----------~~~~~Gid~~~ 284 (337)
T 2z0m_A 264 EGEYDMLITT-----------DVASRGLDIPL 284 (337)
T ss_dssp TTSCSEEEEC-----------HHHHTTCCCCC
T ss_pred cCCCcEEEEc-----------CccccCCCccC
Confidence 7 55777777 59999999974
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-34 Score=292.79 Aligned_cols=279 Identities=18% Similarity=0.202 Sum_probs=205.4
Q ss_pred cccccCCCCccCCCC-CcHHHHHHHHHHh--cCCcEEEEecCCcchHHHHHHHHHHHHhc-------CCeEEEEcccHHH
Q psy6275 43 LAQSKEKPAREYPFV-LDPFQKEAILCIE--NNQSVLVSAHTSAGKTVVAEYAIASSLKQ-------SQRVIYTTPIKAL 112 (391)
Q Consensus 43 l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~--~~~~~li~apTGsGKT~~~~~~~~~~l~~-------~~~vlvl~P~~~L 112 (391)
+++.+.+.+..+||. |+|+|.++++.+. .++++++.||||+|||++|++|+++.+.. +.++||++||++|
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~L 107 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDL 107 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHH
Confidence 888888999999998 9999999999988 68899999999999999999999988744 3589999999999
Q ss_pred HHHHHHHHHHhcc--------cceeeeCCccc--------CCCCCEEEEcHHHHHHHHhcC-ccccCccceEEEeccccc
Q psy6275 113 SNQKYREFEEQFK--------DVGLITGDVTI--------NPSSSCLIMTTEILRNMLYRG-SEITREVGWVIFDEIHYM 175 (391)
Q Consensus 113 ~~q~~~~~~~~~~--------~v~~~~g~~~~--------~~~~~I~v~Tp~~l~~~l~~~-~~~l~~~~~lViDE~h~~ 175 (391)
+.|+++.+.+++. .+..+.|+... ...++|+|+||+++..++.+. ...++.++++|+||||++
T Consensus 108 a~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l 187 (579)
T 3sqw_A 108 ALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRL 187 (579)
T ss_dssp HHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHH
T ss_pred HHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHh
Confidence 9999999998753 23445555442 125899999999999888764 446789999999999999
Q ss_pred CccccchhHHHHHHHhC-------CCCcEEEEcccCCCh-HHHHHHhccccCCCeeEeeeCCC---C---cCceEeeccC
Q psy6275 176 RDKERGYVWEETLILLS-------DNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVYTDYR---P---TPLQHYLFPN 241 (391)
Q Consensus 176 ~~~~~~~~~~~i~~~~~-------~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~~~~~~---~---~~i~~~~~~~ 241 (391)
+++++...+..++..++ ...|+++||||+++. ..+.. .....+..+...... + ..+.+.++..
T Consensus 188 ~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 264 (579)
T 3sqw_A 188 LEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLAN---NIMNKKECLFLDTVDKNEPEAHERIDQSVVIS 264 (579)
T ss_dssp TSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTT---TTCCSSEEEEEESSCSSSCSSCTTEEEEEEEE
T ss_pred hcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHH---HHcCCCceEEEeecCccccccccccceEEEEe
Confidence 99998888888877653 267999999999876 44444 333444444332211 1 1233333221
Q ss_pred CCCCeeeeecCchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHH-cCCCcEEEEEcchhhH
Q psy6275 242 GGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIME-RNLAPVIVFSFSKKDC 320 (391)
Q Consensus 242 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~iIF~~t~~~~ 320 (391)
... ..... ..+..+...+.. ....++||||+|++.|
T Consensus 265 ~~~---------------~~~~~----------------------------~~~~~l~~~~~~~~~~~~~iVF~~t~~~~ 301 (579)
T 3sqw_A 265 EKF---------------ANSIF----------------------------AAVEHIKKQIKERDSNYKAIIFAPTVKFT 301 (579)
T ss_dssp SST---------------THHHH----------------------------HHHHHHHHHHHHTTTCCEEEEECSSHHHH
T ss_pred cch---------------hhhHH----------------------------HHHHHHHHHHhhcCCCCcEEEECCcHHHH
Confidence 100 00000 112233344443 4467999999999999
Q ss_pred HHHHHHhhcc---CCCC--------hHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhccC
Q psy6275 321 EIYAMQMAKL---NFNE--------TEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHG 378 (391)
Q Consensus 321 ~~la~~L~~~---g~~~--------~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~ 378 (391)
+.++..|.+. ++.+ ..+|..+.+.|++ ...+|++|+ ++++|||+++.
T Consensus 302 ~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-----------~~~~GiDip~v 360 (579)
T 3sqw_A 302 SFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----------VGARGMDFPNV 360 (579)
T ss_dssp HHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----------GGTSSCCCTTC
T ss_pred HHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-----------hhhcCCCcccC
Confidence 9999999865 4433 4678888888887 668888885 99999998753
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-34 Score=290.70 Aligned_cols=279 Identities=18% Similarity=0.203 Sum_probs=204.3
Q ss_pred cccccCCCCccCCCC-CcHHHHHHHHHHh--cCCcEEEEecCCcchHHHHHHHHHHHHhcC-------CeEEEEcccHHH
Q psy6275 43 LAQSKEKPAREYPFV-LDPFQKEAILCIE--NNQSVLVSAHTSAGKTVVAEYAIASSLKQS-------QRVIYTTPIKAL 112 (391)
Q Consensus 43 l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~--~~~~~li~apTGsGKT~~~~~~~~~~l~~~-------~~vlvl~P~~~L 112 (391)
+++.+.+.+..+||. |+|+|.++++.+. .+++++++||||+|||++|++|+++.+..+ .++||++|+++|
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~L 158 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDL 158 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHH
Confidence 777888888899997 9999999999988 678999999999999999999999987543 489999999999
Q ss_pred HHHHHHHHHHhcc--------cceeeeCCccc--------CCCCCEEEEcHHHHHHHHhcC-ccccCccceEEEeccccc
Q psy6275 113 SNQKYREFEEQFK--------DVGLITGDVTI--------NPSSSCLIMTTEILRNMLYRG-SEITREVGWVIFDEIHYM 175 (391)
Q Consensus 113 ~~q~~~~~~~~~~--------~v~~~~g~~~~--------~~~~~I~v~Tp~~l~~~l~~~-~~~l~~~~~lViDE~h~~ 175 (391)
+.|+++.++.+.. .+..+.|+... ...++|+|+||+++..++.+. ...++.++++|+||||++
T Consensus 159 a~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l 238 (563)
T 3i5x_A 159 ALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRL 238 (563)
T ss_dssp HHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHH
T ss_pred HHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHH
Confidence 9999999998643 24445565442 236899999999999888764 346788999999999999
Q ss_pred CccccchhHHHHHHHhC-------CCCcEEEEcccCCCh-HHHHHHhccccCCCeeEeeeCCC---C---cCceEeeccC
Q psy6275 176 RDKERGYVWEETLILLS-------DNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVYTDYR---P---TPLQHYLFPN 241 (391)
Q Consensus 176 ~~~~~~~~~~~i~~~~~-------~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~~~~~~---~---~~i~~~~~~~ 241 (391)
++++++..+..++..++ .+.|+++||||+++. ..+..+ ....+..+...... + ..+.+.++..
T Consensus 239 ~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (563)
T 3i5x_A 239 LEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANN---IMNKKECLFLDTVDKNEPEAHERIDQSVVIS 315 (563)
T ss_dssp TSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTT---TCCSSEEEEEESSCSSSCSSCTTEEEEEEEE
T ss_pred hccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHH---hcCCCceEEEeccCCCCccccccCceEEEEC
Confidence 99999998888877652 368999999999876 444443 33344443332211 1 1222222211
Q ss_pred CCCCeeeeecCchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHH-cCCCcEEEEEcchhhH
Q psy6275 242 GGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIME-RNLAPVIVFSFSKKDC 320 (391)
Q Consensus 242 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~iIF~~t~~~~ 320 (391)
... ..... ..+..+...+.. ....++||||+|++.|
T Consensus 316 ~~~---------------~~~~~----------------------------~~~~~l~~~~~~~~~~~~~iVF~~s~~~~ 352 (563)
T 3i5x_A 316 EKF---------------ANSIF----------------------------AAVEHIKKQIKERDSNYKAIIFAPTVKFT 352 (563)
T ss_dssp SST---------------THHHH----------------------------HHHHHHHHHHHHTTTCCEEEEECSCHHHH
T ss_pred chh---------------HhhHH----------------------------HHHHHHHHHHhhcCCCCcEEEEcCcHHHH
Confidence 100 00000 011233333333 4467999999999999
Q ss_pred HHHHHHhhcc---CCC--------ChHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhccC
Q psy6275 321 EIYAMQMAKL---NFN--------ETEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHG 378 (391)
Q Consensus 321 ~~la~~L~~~---g~~--------~~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~ 378 (391)
+.++..|.+. ++. ...+|..+.+.|++ ...+|++|+ ++++|||++.+
T Consensus 353 ~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~-----------~~~~GiDip~v 411 (563)
T 3i5x_A 353 SFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----------VGARGMDFPNV 411 (563)
T ss_dssp HHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----------GGTSSCCCTTC
T ss_pred HHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc-----------hhhcCCCcccC
Confidence 9999999865 443 34778888888887 668888885 99999998743
|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-33 Score=276.99 Aligned_cols=279 Identities=14% Similarity=0.154 Sum_probs=207.4
Q ss_pred CCcccccccccCCCCcc-CCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHH
Q psy6275 37 DLEYQPLAQSKEKPARE-YPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSN 114 (391)
Q Consensus 37 ~~~~~~l~~~~~~~~~~-~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~ 114 (391)
+|+.+++++.+...+++ +||. |+++|.++++.+.+++++++.+|||+|||++|++|++.. +++++|++|+++|+.
T Consensus 3 ~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~---~g~~lvi~P~~aL~~ 79 (523)
T 1oyw_A 3 QAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL---NGLTVVVSPLISLMK 79 (523)
T ss_dssp CCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS---SSEEEEECSCHHHHH
T ss_pred ChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh---CCCEEEECChHHHHH
Confidence 57888888888888887 8997 999999999999999999999999999999999998753 689999999999999
Q ss_pred HHHHHHHHhcccceeeeCCccc-----------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccc--cc
Q psy6275 115 QKYREFEEQFKDVGLITGDVTI-----------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKE--RG 181 (391)
Q Consensus 115 q~~~~~~~~~~~v~~~~g~~~~-----------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~--~~ 181 (391)
|+.+.++...-.+..++|+... ....+|+++||+++............+++++|+||||++.+++ +.
T Consensus 80 q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~fr 159 (523)
T 1oyw_A 80 DQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFR 159 (523)
T ss_dssp HHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCC
T ss_pred HHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCCccH
Confidence 9999999876677777776542 2357999999999863221111223689999999999998876 44
Q ss_pred hhHHHH---HHHhCCCCcEEEEcccCCCh--HHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhh
Q psy6275 182 YVWEET---LILLSDNVRFVFLSATIPNA--SQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFK 256 (391)
Q Consensus 182 ~~~~~i---~~~~~~~~~~i~~SAT~~~~--~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~ 256 (391)
+.+..+ ...+ ++.+++++|||+++. .++.++++. ..+.... ......++...+...
T Consensus 160 ~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~--~~~~~~~-~~~~r~~l~~~v~~~--------------- 220 (523)
T 1oyw_A 160 PEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGL--NDPLIQI-SSFDRPNIRYMLMEK--------------- 220 (523)
T ss_dssp HHHHGGGGHHHHC-TTSCEEEEESCCCHHHHHHHHHHHTC--CSCEEEE-CCCCCTTEEEEEEEC---------------
T ss_pred HHHHHHHHHHHhC-CCCCEEEEeCCCCHHHHHHHHHHhCC--CCCeEEe-CCCCCCceEEEEEeC---------------
Confidence 444433 3333 468999999999775 556776642 2333222 222222333222210
Q ss_pred hhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCC--
Q psy6275 257 EHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNE-- 334 (391)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~-- 334 (391)
.+....+.+.+....++++||||+|+++|+.+++.|.+.|+.+
T Consensus 221 -----------------------------------~~~~~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~ 265 (523)
T 1oyw_A 221 -----------------------------------FKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAA 265 (523)
T ss_dssp -----------------------------------SSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEE
T ss_pred -----------------------------------CCHHHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEE
Confidence 0234466777777677799999999999999999999876653
Q ss_pred ------hHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhc------cCCCCcc
Q psy6275 335 ------TEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIH------HGVKPYG 383 (391)
Q Consensus 335 ------~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~------h~~~~~~ 383 (391)
.++|..+.+.|++ ...++++|+ ++++|||++ |.++|..
T Consensus 266 ~h~~l~~~~R~~~~~~f~~g~~~vlVaT~-----------a~~~GiD~p~v~~VI~~~~p~s 316 (523)
T 1oyw_A 266 YHAGLENNVRADVQEKFQRDDLQIVVATV-----------AFGMGINKPNVRFVVHFDIPRN 316 (523)
T ss_dssp ECTTSCHHHHHHHHHHHHTTSCSEEEECT-----------TSCTTTCCTTCCEEEESSCCSS
T ss_pred ecCCCCHHHHHHHHHHHHcCCCeEEEEec-----------hhhCCCCccCccEEEEECCCCC
Confidence 3778888888887 667888885 899999986 4566644
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-33 Score=271.95 Aligned_cols=252 Identities=13% Similarity=0.133 Sum_probs=188.9
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc---cceee
Q psy6275 54 YPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK---DVGLI 130 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~---~v~~~ 130 (391)
+||+|+++|.++++.+.++++++++||||+|||++|+.+++.....+++++|++|+++|+.|+++.++.+.. .+..+
T Consensus 18 ~~~~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~ 97 (414)
T 3oiy_A 18 FGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGF 97 (414)
T ss_dssp HSSCCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEEC
T ss_pred cCCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEE
Confidence 578899999999999999999999999999999999999988888899999999999999999999999764 67778
Q ss_pred eCCccc-----------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCc-----------cccchh-HHHH
Q psy6275 131 TGDVTI-----------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRD-----------KERGYV-WEET 187 (391)
Q Consensus 131 ~g~~~~-----------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~-----------~~~~~~-~~~i 187 (391)
+|+... ...++|+|+||+++.+++.. ..+.+++++|+||||++.+ .++... +..+
T Consensus 98 ~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~i 175 (414)
T 3oiy_A 98 YSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKA 175 (414)
T ss_dssp CTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHHHHHH
T ss_pred ECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhccchhhhHHhhcCCcHHHHHHH
Confidence 887764 22489999999999877654 4466899999999997653 445555 6777
Q ss_pred HHHhC-----------CCCcEEEEccc-CCCh--HHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCc
Q psy6275 188 LILLS-----------DNVRFVFLSAT-IPNA--SQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDN 253 (391)
Q Consensus 188 ~~~~~-----------~~~~~i~~SAT-~~~~--~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~ 253 (391)
+..++ ...|++++||| .+.. ..+...+... .+.........+.+.++..+
T Consensus 176 ~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~i~~~~~~~~----------- 239 (414)
T 3oiy_A 176 FSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNF-----TVGRLVSVARNITHVRISSR----------- 239 (414)
T ss_dssp HHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSC-----CSSCCCCCCCSEEEEEESSC-----------
T ss_pred HHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhcc-----CcCccccccccchheeeccC-----------
Confidence 77765 78999999999 4443 1232222110 11111122234555554321
Q ss_pred hhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCC
Q psy6275 254 KFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFN 333 (391)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~ 333 (391)
+...+.+.+...+ +++||||++++.|+.++..|.+.|+.
T Consensus 240 ----------------------------------------~~~~l~~~l~~~~-~~~lVF~~~~~~~~~l~~~L~~~~~~ 278 (414)
T 3oiy_A 240 ----------------------------------------SKEKLVELLEIFR-DGILIFAQTEEEGKELYEYLKRFKFN 278 (414)
T ss_dssp ----------------------------------------CHHHHHHHHHHHC-SSEEEEESSHHHHHHHHHHHHHTTCC
T ss_pred ----------------------------------------HHHHHHHHHHHcC-CCEEEEECCHHHHHHHHHHHHHcCCc
Confidence 1234455555544 69999999999999999999987766
Q ss_pred Ch-----HHHHHHHHHHHH-Hhhhcch----hhccCcchHhHHHHHHhhhhhcc
Q psy6275 334 ET-----EEVKLVDDVFSN-AMDVLSE----EDRKLPQIENILPLLRRGIGIHH 377 (391)
Q Consensus 334 ~~-----~~r~~~~~~~~~-~~~~l~~----~d~~~~~~~~~~~~l~~GI~~~h 377 (391)
+. .+|. .+.|++ ..++|++ |+ ++++|||++.
T Consensus 279 ~~~~~h~~~r~--~~~f~~g~~~vLvat~s~T~-----------~~~~GiDip~ 319 (414)
T 3oiy_A 279 VGETWSEFEKN--FEDFKVGKINILIGVQAYYG-----------KLTRGVDLPE 319 (414)
T ss_dssp EEESSSCHHHH--HHHHHTTSCSEEEEECCTTC-----------CCCCCCCCTT
T ss_pred eehhhcCcchH--HHHHhCCCCeEEEEecCcCc-----------hhhccCcccc
Confidence 53 3444 556655 6788888 75 8999999987
|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=278.13 Aligned_cols=281 Identities=16% Similarity=0.196 Sum_probs=204.6
Q ss_pred cccccccccCCCCcc-CCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHH
Q psy6275 39 EYQPLAQSKEKPARE-YPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQK 116 (391)
Q Consensus 39 ~~~~l~~~~~~~~~~-~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~ 116 (391)
..+++++.+...++. +||. |+|+|.++|+.+.+++++++.+|||+|||++|++|++. .++++||++|+++|+.|+
T Consensus 24 ~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~---~~g~~lVisP~~~L~~q~ 100 (591)
T 2v1x_A 24 EDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALC---SDGFTLVICPLISLMEDQ 100 (591)
T ss_dssp SCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHT---SSSEEEEECSCHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHH---cCCcEEEEeCHHHHHHHH
Confidence 346777778877777 6997 99999999999999999999999999999999999865 478999999999999999
Q ss_pred HHHHHHhcccceeeeCCccc-------------CCCCCEEEEcHHHHH------HHHhcCccccCccceEEEecccccCc
Q psy6275 117 YREFEEQFKDVGLITGDVTI-------------NPSSSCLIMTTEILR------NMLYRGSEITREVGWVIFDEIHYMRD 177 (391)
Q Consensus 117 ~~~~~~~~~~v~~~~g~~~~-------------~~~~~I~v~Tp~~l~------~~l~~~~~~l~~~~~lViDE~h~~~~ 177 (391)
.+.+....-.+..++|+... ....+|+|+||+++. +.+.. ...+..++++|+||||++.+
T Consensus 101 ~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~-~~~~~~i~~iViDEAH~is~ 179 (591)
T 2v1x_A 101 LMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK-AYEARRFTRIAVDEVHCCSQ 179 (591)
T ss_dssp HHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH-HHHTTCEEEEEEETGGGGST
T ss_pred HHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh-hhhccCCcEEEEECcccccc
Confidence 99999986677777776542 346899999999874 22222 23466899999999999998
Q ss_pred cc--cchhHHH--HHHHhCCCCcEEEEcccCCCh--HHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeec
Q psy6275 178 KE--RGYVWEE--TLILLSDNVRFVFLSATIPNA--SQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVD 251 (391)
Q Consensus 178 ~~--~~~~~~~--i~~~~~~~~~~i~~SAT~~~~--~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~ 251 (391)
++ +.+.+.. .+....++.++++||||+++. .++..++.. .. ..++.......++.+.+...+..
T Consensus 180 ~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~--~~-~~~~~~~~~r~nl~~~v~~~~~~------- 249 (591)
T 2v1x_A 180 WGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCI--EK-CFTFTASFNRPNLYYEVRQKPSN------- 249 (591)
T ss_dssp TCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTC--CS-CEEEECCCCCTTEEEEEEECCSS-------
T ss_pred cccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCC--CC-cEEEecCCCCcccEEEEEeCCCc-------
Confidence 76 5555543 333344579999999999865 556666542 12 22333332223333322211100
Q ss_pred CchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHH-cCCCcEEEEEcchhhHHHHHHHhhcc
Q psy6275 252 DNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIME-RNLAPVIVFSFSKKDCEIYAMQMAKL 330 (391)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~iIF~~t~~~~~~la~~L~~~ 330 (391)
. ...+..+.+.+.. ..++++||||+|++.|+.++..|...
T Consensus 250 --------~-------------------------------~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~ 290 (591)
T 2v1x_A 250 --------T-------------------------------EDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNL 290 (591)
T ss_dssp --------H-------------------------------HHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHT
T ss_pred --------H-------------------------------HHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHC
Confidence 0 0123355555543 24679999999999999999999987
Q ss_pred CCCC--------hHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhc------cCCCCcc
Q psy6275 331 NFNE--------TEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIH------HGVKPYG 383 (391)
Q Consensus 331 g~~~--------~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~------h~~~~~~ 383 (391)
|+.+ .++|..+.+.|+. ...++++|+ ++++|||++ |.++|..
T Consensus 291 g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~-----------a~~~GID~p~V~~VI~~~~p~s 347 (591)
T 2v1x_A 291 GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATV-----------AFGMGIDKPDVRFVIHHSMSKS 347 (591)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECT-----------TSCTTCCCSCEEEEEESSCCSS
T ss_pred CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec-----------hhhcCCCcccccEEEEeCCCCC
Confidence 6654 3678888888877 668888885 899999986 4666643
|
| >4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-31 Score=285.18 Aligned_cols=252 Identities=13% Similarity=0.139 Sum_probs=192.2
Q ss_pred cCCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc---ccee
Q psy6275 53 EYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK---DVGL 129 (391)
Q Consensus 53 ~~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~---~v~~ 129 (391)
.+||+|+++|.++++.+.+|++++++||||||||++++.+++..+..+.++||++||++|+.|+++.++.+.. .+..
T Consensus 74 ~~gf~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~ 153 (1104)
T 4ddu_A 74 KFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFG 153 (1104)
T ss_dssp HSSSCCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEE
T ss_pred hcCCCCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEE
Confidence 4688999999999999999999999999999999999999988888899999999999999999999999653 6777
Q ss_pred eeCCccc-----------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCc-----------cccchh-HHH
Q psy6275 130 ITGDVTI-----------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRD-----------KERGYV-WEE 186 (391)
Q Consensus 130 ~~g~~~~-----------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~-----------~~~~~~-~~~ 186 (391)
++|+... ...++|+|+||+++.+++.. ..+.+++++|+||||++.+ +++... +..
T Consensus 154 l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~i~~ 231 (1104)
T 4ddu_A 154 FYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRK 231 (1104)
T ss_dssp ECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchhhhHhcCCCHHHHHH
Confidence 8888765 23489999999999877664 4567999999999987654 555555 677
Q ss_pred HHHHhC-----------CCCcEEEEcccC-CCh-H-HH-HHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeec
Q psy6275 187 TLILLS-----------DNVRFVFLSATI-PNA-S-QF-AQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVD 251 (391)
Q Consensus 187 i~~~~~-----------~~~~~i~~SAT~-~~~-~-~~-~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~ 251 (391)
++..++ .+.|+++||||+ +.. . .+ ..++. +.+......+..+.+.++.++
T Consensus 232 il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~------i~v~~~~~~~~~i~~~~~~~~--------- 296 (1104)
T 4ddu_A 232 AFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN------FTVGRLVSVARNITHVRISSR--------- 296 (1104)
T ss_dssp HHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC------CCCCBCCCCCCCEEEEEESCC---------
T ss_pred HHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee------EEeccCCCCcCCceeEEEecC---------
Confidence 777776 789999999994 443 1 22 22221 111222223334555555331
Q ss_pred CchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccC
Q psy6275 252 DNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLN 331 (391)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g 331 (391)
+...+.+.+...+ +++||||++++.|+.++..|...|
T Consensus 297 ------------------------------------------k~~~L~~ll~~~~-~~~LVF~~s~~~a~~l~~~L~~~g 333 (1104)
T 4ddu_A 297 ------------------------------------------SKEKLVELLEIFR-DGILIFAQTEEEGKELYEYLKRFK 333 (1104)
T ss_dssp ------------------------------------------CHHHHHHHHHHHC-SSEEEEESSSHHHHHHHHHHHHTT
T ss_pred ------------------------------------------HHHHHHHHHHhcC-CCEEEEECcHHHHHHHHHHHHhCC
Confidence 1234555555544 699999999999999999999887
Q ss_pred CCCh-----HHHHHHHHHHHH-Hhhhcch----hhccCcchHhHHHHHHhhhhhcc
Q psy6275 332 FNET-----EEVKLVDDVFSN-AMDVLSE----EDRKLPQIENILPLLRRGIGIHH 377 (391)
Q Consensus 332 ~~~~-----~~r~~~~~~~~~-~~~~l~~----~d~~~~~~~~~~~~l~~GI~~~h 377 (391)
+.+. +++. .+.|++ ..++|++ | ++++||||+++
T Consensus 334 ~~~~~~lhg~rr~--l~~F~~G~~~VLVatas~T-----------dvlarGIDip~ 376 (1104)
T 4ddu_A 334 FNVGETWSEFEKN--FEDFKVGKINILIGVQAYY-----------GKLTRGVDLPE 376 (1104)
T ss_dssp CCEEESSSSHHHH--HHHHHHTSCSEEEEETTTH-----------HHHCCSCCCTT
T ss_pred CCeeeEecCcHHH--HHHHHCCCCCEEEEecCCC-----------CeeEecCcCCC
Confidence 7664 3444 556655 6788887 6 59999999987
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A | Back alignment and structure |
|---|
Probab=99.97 E-value=6.9e-32 Score=243.45 Aligned_cols=189 Identities=16% Similarity=0.137 Sum_probs=162.2
Q ss_pred CCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh--------cCCeEEEE
Q psy6275 36 PDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK--------QSQRVIYT 106 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~--------~~~~vlvl 106 (391)
.+|..+++++.+.+.+.++||. |+++|.++++.+.+|++++++||||+|||++|++|++..+. .+++++|+
T Consensus 29 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil 108 (242)
T 3fe2_A 29 LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVL 108 (242)
T ss_dssp SSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEE
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEE
Confidence 4788899999999999999998 99999999999999999999999999999999999998775 36789999
Q ss_pred cccHHHHHHHHHHHHHhcc----cceeeeCCcccC-------CCCCEEEEcHHHHHHHHhcCccccCccceEEEeccccc
Q psy6275 107 TPIKALSNQKYREFEEQFK----DVGLITGDVTIN-------PSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYM 175 (391)
Q Consensus 107 ~P~~~L~~q~~~~~~~~~~----~v~~~~g~~~~~-------~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~ 175 (391)
+|+++|+.|+++.++++.. .+..++|+.... ..++|+|+||+++.+++......+.+++++|+||||++
T Consensus 109 ~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l 188 (242)
T 3fe2_A 109 APTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRM 188 (242)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHH
T ss_pred eCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHH
Confidence 9999999999999988765 455667765432 35799999999999999887778899999999999999
Q ss_pred CccccchhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHHhccccCCCeeEeee
Q psy6275 176 RDKERGYVWEETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVYT 227 (391)
Q Consensus 176 ~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~~~ 227 (391)
.+++++..+..++..++.+.|+++||||+++. ..+++ .+..+|..+...
T Consensus 189 ~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~---~~l~~~~~i~~~ 238 (242)
T 3fe2_A 189 LDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAE---DFLKDYIHINIG 238 (242)
T ss_dssp HHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHH---HHCSSCEEEEEC
T ss_pred hhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHH---HHCCCCEEEEec
Confidence 99889999999999998899999999999876 44444 344566665543
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-31 Score=239.44 Aligned_cols=186 Identities=21% Similarity=0.169 Sum_probs=156.3
Q ss_pred CCcc-cccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh---------cCCeEEE
Q psy6275 37 DLEY-QPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK---------QSQRVIY 105 (391)
Q Consensus 37 ~~~~-~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~---------~~~~vlv 105 (391)
+|.. +++++.+.+.+.+.||. |+++|.++++.+.+++++++.||||+|||++|++|++..+. .+.+++|
T Consensus 20 ~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~li 99 (228)
T 3iuy_A 20 RFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLV 99 (228)
T ss_dssp SHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEE
T ss_pred hHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEE
Confidence 4555 68888999999999996 99999999999999999999999999999999999988763 4678999
Q ss_pred EcccHHHHHHHHHHHHHhcc---cceeeeCCcccC-------CCCCEEEEcHHHHHHHHhcCccccCccceEEEeccccc
Q psy6275 106 TTPIKALSNQKYREFEEQFK---DVGLITGDVTIN-------PSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYM 175 (391)
Q Consensus 106 l~P~~~L~~q~~~~~~~~~~---~v~~~~g~~~~~-------~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~ 175 (391)
++|+++|+.|+.+.++++.. .+..++|+.... ..++|+|+||+++.+++......+.+++++|+||||++
T Consensus 100 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~ 179 (228)
T 3iuy_A 100 LTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKM 179 (228)
T ss_dssp ECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHHH
T ss_pred EeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHHH
Confidence 99999999999999999854 555666665543 34799999999999998887777899999999999999
Q ss_pred CccccchhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHHhccccCCCeeEe
Q psy6275 176 RDKERGYVWEETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVV 225 (391)
Q Consensus 176 ~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~ 225 (391)
.++++...+..++..++.+.|+++||||+++. +.+.. .+..+|..++
T Consensus 180 ~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~---~~l~~p~~i~ 227 (228)
T 3iuy_A 180 LDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLAL---SYLKDPMIVY 227 (228)
T ss_dssp HHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHH---TTCSSCEEEE
T ss_pred hccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHH---HHCCCCEEEe
Confidence 98889999999999999899999999999876 44443 4455666554
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.97 E-value=6.1e-31 Score=231.15 Aligned_cols=185 Identities=18% Similarity=0.244 Sum_probs=158.1
Q ss_pred CCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc---CCeEEEEcccHHH
Q psy6275 37 DLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ---SQRVIYTTPIKAL 112 (391)
Q Consensus 37 ~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~---~~~vlvl~P~~~L 112 (391)
+|+.+++++.+.+.+.++||. |+++|.++++.+.+++++++.+|||+|||++|++|++..+.. +.+++|++|+++|
T Consensus 4 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 83 (206)
T 1vec_A 4 EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTREL 83 (206)
T ss_dssp SGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHH
T ss_pred ChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHH
Confidence 588899999999999999996 999999999999999999999999999999999999988643 5689999999999
Q ss_pred HHHHHHHHHHhcc-----cceeeeCCccc-------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCcccc
Q psy6275 113 SNQKYREFEEQFK-----DVGLITGDVTI-------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKER 180 (391)
Q Consensus 113 ~~q~~~~~~~~~~-----~v~~~~g~~~~-------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~ 180 (391)
+.|+++.+.++.. .+...+|+... ...++|+|+||+++.+.+.+....+.+++++|+||||++.+.++
T Consensus 84 ~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~ 163 (206)
T 1vec_A 84 ALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDF 163 (206)
T ss_dssp HHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTTT
T ss_pred HHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhhCc
Confidence 9999999998864 45556776543 34679999999999999988777788999999999999988888
Q ss_pred chhHHHHHHHhCCCCcEEEEcccCCChHHHHHHhccccCCCee
Q psy6275 181 GYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCH 223 (391)
Q Consensus 181 ~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~ 223 (391)
...+..++..++.+.|+++||||+++. +.+++..+..+|..
T Consensus 164 ~~~l~~i~~~~~~~~~~l~~SAT~~~~--~~~~~~~~l~~p~~ 204 (206)
T 1vec_A 164 VQIMEDIILTLPKNRQILLYSATFPLS--VQKFMNSHLEKPYE 204 (206)
T ss_dssp HHHHHHHHHHSCTTCEEEEEESCCCHH--HHHHHHHHCSSCEE
T ss_pred HHHHHHHHHhCCccceEEEEEeeCCHH--HHHHHHHHcCCCeE
Confidence 888899999898889999999999765 33333344455544
|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-31 Score=235.90 Aligned_cols=191 Identities=17% Similarity=0.205 Sum_probs=160.9
Q ss_pred CCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh---cCCeEEEEcccHH
Q psy6275 36 PDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK---QSQRVIYTTPIKA 111 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~---~~~~vlvl~P~~~ 111 (391)
.+|+.+++++.+.+.+.++||. |+++|.++++.+.+++++++++|||+|||++|++|++..+. .+.+++|++|+++
T Consensus 4 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~ 83 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRE 83 (219)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHH
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHH
Confidence 3588889999999999999997 99999999999999999999999999999999999998875 3579999999999
Q ss_pred HHHHHHHHHHHhcc--------cceeeeCCccc-------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccC
Q psy6275 112 LSNQKYREFEEQFK--------DVGLITGDVTI-------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMR 176 (391)
Q Consensus 112 L~~q~~~~~~~~~~--------~v~~~~g~~~~-------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~ 176 (391)
|+.|+++.++++.. .+..+.|+... ...++|+|+||+++.+.+......+.+++++|+||||++.
T Consensus 84 L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~ 163 (219)
T 1q0u_A 84 LATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLML 163 (219)
T ss_dssp HHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHH
T ss_pred HHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHHh
Confidence 99999999988864 34446665442 2357899999999999988877778899999999999998
Q ss_pred ccccchhHHHHHHHhCCCCcEEEEcccCCChHHHHHHhccccCCCeeEeeeC
Q psy6275 177 DKERGYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTD 228 (391)
Q Consensus 177 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~ 228 (391)
++++...+..++..++.+.|+++||||+++. +.+++..+..+|..+....
T Consensus 164 ~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~--~~~~~~~~~~~p~~~~~~~ 213 (219)
T 1q0u_A 164 DMGFITDVDQIAARMPKDLQMLVFSATIPEK--LKPFLKKYMENPTFVHVLE 213 (219)
T ss_dssp HTTCHHHHHHHHHTSCTTCEEEEEESCCCGG--GHHHHHHHCSSCEEEECC-
T ss_pred hhChHHHHHHHHHhCCcccEEEEEecCCCHH--HHHHHHHHcCCCeEEEeec
Confidence 8888888888998888889999999999765 4444445566776665443
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-30 Score=235.84 Aligned_cols=189 Identities=17% Similarity=0.177 Sum_probs=158.6
Q ss_pred CCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc------------CCe
Q psy6275 36 PDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ------------SQR 102 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~------------~~~ 102 (391)
.+|+.+++++.+.+.+...||. |+++|.++++.+.+++++++++|||+|||++|++|++..+.. +++
T Consensus 23 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 102 (253)
T 1wrb_A 23 ENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPK 102 (253)
T ss_dssp CSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCS
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCce
Confidence 4689999999999999999997 999999999999999999999999999999999999987742 358
Q ss_pred EEEEcccHHHHHHHHHHHHHhcc----cceeeeCCccc-------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEec
Q psy6275 103 VIYTTPIKALSNQKYREFEEQFK----DVGLITGDVTI-------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDE 171 (391)
Q Consensus 103 vlvl~P~~~L~~q~~~~~~~~~~----~v~~~~g~~~~-------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE 171 (391)
+||++|+++|+.|+++.++++.. .+..++|+... ...++|+|+||+++.+++......+.+++++|+||
T Consensus 103 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDE 182 (253)
T 1wrb_A 103 CLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDE 182 (253)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEET
T ss_pred EEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeC
Confidence 99999999999999999998865 34556666543 24679999999999999988777788999999999
Q ss_pred ccccCccccchhHHHHHHHh--CC--CCcEEEEcccCCCh-HHHHHHhccccCCCeeEeee
Q psy6275 172 IHYMRDKERGYVWEETLILL--SD--NVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVYT 227 (391)
Q Consensus 172 ~h~~~~~~~~~~~~~i~~~~--~~--~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~~~ 227 (391)
||++.+++++..+..++..+ +. +.|+++||||+++. ..+++ .+..+|..+...
T Consensus 183 ah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~---~~l~~~~~i~~~ 240 (253)
T 1wrb_A 183 ADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAA---DFLYNYIFMTVG 240 (253)
T ss_dssp HHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHH---HHCSSCEEEEEC
T ss_pred HHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHH---HHcCCCEEEEEC
Confidence 99999888888888888853 33 68999999999766 44444 344566665443
|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.4e-31 Score=244.36 Aligned_cols=187 Identities=17% Similarity=0.165 Sum_probs=157.2
Q ss_pred CCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcC--CcEEEEecCCcchHHHHHHHHHHHHhc---CCeEEEEccc
Q psy6275 36 PDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENN--QSVLVSAHTSAGKTVVAEYAIASSLKQ---SQRVIYTTPI 109 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~--~~~li~apTGsGKT~~~~~~~~~~l~~---~~~vlvl~P~ 109 (391)
.+|..+++++.+.+.+..+||. |+++|.++++.+..+ ++++++||||||||++|++|++..+.. ++++||++||
T Consensus 92 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~Pt 171 (300)
T 3fmo_B 92 KSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPT 171 (300)
T ss_dssp CCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCc
Confidence 4788899999999999999997 999999999999887 999999999999999999999998743 4589999999
Q ss_pred HHHHHHHHHHHHHhcc-----cceeeeCCcccC----CCCCEEEEcHHHHHHHHhc-CccccCccceEEEecccccCc-c
Q psy6275 110 KALSNQKYREFEEQFK-----DVGLITGDVTIN----PSSSCLIMTTEILRNMLYR-GSEITREVGWVIFDEIHYMRD-K 178 (391)
Q Consensus 110 ~~L~~q~~~~~~~~~~-----~v~~~~g~~~~~----~~~~I~v~Tp~~l~~~l~~-~~~~l~~~~~lViDE~h~~~~-~ 178 (391)
++|+.|++..++.+.. .+....|+.... ..++|+|+||+++++++.+ ....+.+++++|+||||++++ .
T Consensus 172 reLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~ 251 (300)
T 3fmo_B 172 YELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQ 251 (300)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHST
T ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhhcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhcc
Confidence 9999999999998875 345566655432 3568999999999999865 445678999999999999987 6
Q ss_pred ccchhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHHhccccCCCeeEe
Q psy6275 179 ERGYVWEETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVV 225 (391)
Q Consensus 179 ~~~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~ 225 (391)
++...+..++..++.++|+++||||+++. ..++. .+..+|..+.
T Consensus 252 ~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~---~~l~~p~~i~ 296 (300)
T 3fmo_B 252 GHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQ---KVVPDPNVIK 296 (300)
T ss_dssp THHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHH---HHSSSCEEEE
T ss_pred CcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHH---HHCCCCeEEE
Confidence 77788888888888899999999999876 55555 3445666554
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.1e-31 Score=237.64 Aligned_cols=187 Identities=18% Similarity=0.235 Sum_probs=157.0
Q ss_pred CCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh---cCCeEEEEcccHH
Q psy6275 36 PDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK---QSQRVIYTTPIKA 111 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~---~~~~vlvl~P~~~ 111 (391)
.+|+.+++++.+.+.+..+||. |+++|.++++.+.+++++++.+|||+|||++|++|++..+. .+.+++|++|+++
T Consensus 30 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~ 109 (237)
T 3bor_A 30 DNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRE 109 (237)
T ss_dssp CSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHH
Confidence 4689999999999999999998 99999999999999999999999999999999999999875 4679999999999
Q ss_pred HHHHHHHHHHHhcc----cceeeeCCcccC--------CCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccc
Q psy6275 112 LSNQKYREFEEQFK----DVGLITGDVTIN--------PSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKE 179 (391)
Q Consensus 112 L~~q~~~~~~~~~~----~v~~~~g~~~~~--------~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~ 179 (391)
|+.|+++.++.+.. .+....|+.... ..++|+|+||+++.+++......+..++++|+||||++.+++
T Consensus 110 L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~ 189 (237)
T 3bor_A 110 LAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRG 189 (237)
T ss_dssp HHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTT
T ss_pred HHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhhccC
Confidence 99999999999875 344556655432 237999999999999998877778899999999999998888
Q ss_pred cchhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHHhccccCCCeeEe
Q psy6275 180 RGYVWEETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVV 225 (391)
Q Consensus 180 ~~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~ 225 (391)
+...+..++..++...|++++|||+++. ..+.. .+..+|..+.
T Consensus 190 ~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~---~~l~~p~~i~ 233 (237)
T 3bor_A 190 FKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTK---KFMRDPIRIL 233 (237)
T ss_dssp CHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHH---HHCSSCEEEC
T ss_pred cHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHH---HHCCCCEEEE
Confidence 8888888998888899999999999865 44444 3444665554
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.6e-31 Score=235.19 Aligned_cols=188 Identities=17% Similarity=0.155 Sum_probs=161.1
Q ss_pred CCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh---cCCeEEEEcccHH
Q psy6275 36 PDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK---QSQRVIYTTPIKA 111 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~---~~~~vlvl~P~~~ 111 (391)
.+|+.+++++.+.+.+.+.||. |+++|.++++.+.+++++++.+|||+|||++|++|++..+. .+.+++|++|+++
T Consensus 24 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~ 103 (230)
T 2oxc_A 24 ADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTRE 103 (230)
T ss_dssp CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHH
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHH
Confidence 4688899999999999999997 99999999999999999999999999999999999988763 3579999999999
Q ss_pred HHHHHHHHHHHhcc-----cceeeeCCccc------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccc-
Q psy6275 112 LSNQKYREFEEQFK-----DVGLITGDVTI------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKE- 179 (391)
Q Consensus 112 L~~q~~~~~~~~~~-----~v~~~~g~~~~------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~- 179 (391)
|+.|+++.++++.. .+..++|+... ..+++|+|+||+++.+++......+.+++++|+||||++.+++
T Consensus 104 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~ 183 (230)
T 2oxc_A 104 IAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGS 183 (230)
T ss_dssp HHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHHSTTS
T ss_pred HHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHhhcCcc
Confidence 99999999999864 45667776543 2368999999999999988777778899999999999998876
Q ss_pred cchhHHHHHHHhCCCCcEEEEcccCCChHHHHHHhccccCCCeeEe
Q psy6275 180 RGYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVV 225 (391)
Q Consensus 180 ~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~ 225 (391)
+...+..++..++...|++++|||+++. +.+++..+..+|..+.
T Consensus 184 ~~~~~~~i~~~~~~~~~~l~lSAT~~~~--~~~~~~~~~~~p~~i~ 227 (230)
T 2oxc_A 184 FQEQINWIYSSLPASKQMLAVSATYPEF--LANALTKYMRDPTFVR 227 (230)
T ss_dssp SHHHHHHHHHHSCSSCEEEEEESCCCHH--HHHHHTTTCSSCEEEC
T ss_pred hHHHHHHHHHhCCCCCeEEEEEeccCHH--HHHHHHHHcCCCeEEE
Confidence 8888888999998889999999998755 5556656666666543
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-30 Score=229.02 Aligned_cols=185 Identities=19% Similarity=0.204 Sum_probs=159.0
Q ss_pred CCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh------cCCeEEEEccc
Q psy6275 37 DLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK------QSQRVIYTTPI 109 (391)
Q Consensus 37 ~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~------~~~~vlvl~P~ 109 (391)
+|+.+++++.+.+.+...||. |+++|.++++.+.+++++++.+|||+|||++|+++++..+. .+++++|++|+
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~ 81 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPT 81 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSS
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECC
Confidence 478889999999999999996 99999999999999999999999999999999999998863 46789999999
Q ss_pred HHHHHHHHHHHHHhcc--cceeeeCCcccC-------CCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCcccc
Q psy6275 110 KALSNQKYREFEEQFK--DVGLITGDVTIN-------PSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKER 180 (391)
Q Consensus 110 ~~L~~q~~~~~~~~~~--~v~~~~g~~~~~-------~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~ 180 (391)
++|+.|+++.++++.. .+..++|+.... ..++|+|+||+++..++......+.+++++|+||||++.+.++
T Consensus 82 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~ 161 (207)
T 2gxq_A 82 RELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGF 161 (207)
T ss_dssp HHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhccch
Confidence 9999999999999976 455677765431 3589999999999999888777788999999999999988888
Q ss_pred chhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHHhccccCCCeeE
Q psy6275 181 GYVWEETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHV 224 (391)
Q Consensus 181 ~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v 224 (391)
...+..++..++.+.|+++||||+++. ..+.++ +..+|..+
T Consensus 162 ~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~---~~~~p~~i 203 (207)
T 2gxq_A 162 EEEVEALLSATPPSRQTLLFSATLPSWAKRLAER---YMKNPVLI 203 (207)
T ss_dssp HHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHH---HCSSCEEE
T ss_pred HHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHH---HcCCCeEE
Confidence 888888888888889999999999876 455553 34456554
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.1e-30 Score=256.73 Aligned_cols=149 Identities=21% Similarity=0.270 Sum_probs=119.7
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc-----CCeEEEEcccHHHHHHHHHHHHHhcc----
Q psy6275 55 PFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ-----SQRVIYTTPIKALSNQKYREFEEQFK---- 125 (391)
Q Consensus 55 ~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~-----~~~vlvl~P~~~L~~q~~~~~~~~~~---- 125 (391)
.++|+++|.++++.+.+++++++++|||+|||++|++|+++.+.. ++++||++|+++|+.|+.+.+.+++.
T Consensus 5 ~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 84 (556)
T 4a2p_A 5 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGY 84 (556)
T ss_dssp ---CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTC
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCc
Confidence 457999999999999999999999999999999999999988865 78999999999999999999999864
Q ss_pred cceeeeCCcccCC-------CCCEEEEcHHHHHHHHhcCcc-ccCccceEEEecccccCccccchhHHHHHH-----Hh-
Q psy6275 126 DVGLITGDVTINP-------SSSCLIMTTEILRNMLYRGSE-ITREVGWVIFDEIHYMRDKERGYVWEETLI-----LL- 191 (391)
Q Consensus 126 ~v~~~~g~~~~~~-------~~~I~v~Tp~~l~~~l~~~~~-~l~~~~~lViDE~h~~~~~~~~~~~~~i~~-----~~- 191 (391)
.+..++|+..... .++|+|+||+++.+.+..... .+.+++++|+||||++.+++. +..++. .+
T Consensus 85 ~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~---~~~~~~~~~~~~~~ 161 (556)
T 4a2p_A 85 SVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP---YNVLMTRYLEQKFN 161 (556)
T ss_dssp CEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSH---HHHHHHHHHHHHHC
T ss_pred eEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcch---HHHHHHHHHHhhhc
Confidence 5677888775443 478999999999999887766 788999999999999986642 222221 11
Q ss_pred --CCCCcEEEEcccCCC
Q psy6275 192 --SDNVRFVFLSATIPN 206 (391)
Q Consensus 192 --~~~~~~i~~SAT~~~ 206 (391)
.+..++++||||++.
T Consensus 162 ~~~~~~~~l~lSAT~~~ 178 (556)
T 4a2p_A 162 SASQLPQILGLTASVGV 178 (556)
T ss_dssp C---CCEEEEEESCCCC
T ss_pred ccCCCCeEEEEeCCccc
Confidence 356899999999954
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-30 Score=231.28 Aligned_cols=188 Identities=19% Similarity=0.215 Sum_probs=157.2
Q ss_pred CCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh---cCCeEEEEcccHH
Q psy6275 36 PDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK---QSQRVIYTTPIKA 111 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~---~~~~vlvl~P~~~ 111 (391)
.+|+.+++++.+.+.+..+||. |+++|.++++.+.+++++++.+|||+|||++|++++++.+. .+.+++|++|+++
T Consensus 14 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~ 93 (224)
T 1qde_A 14 YKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRE 93 (224)
T ss_dssp CCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHH
Confidence 4688999999999999999996 99999999999999999999999999999999999998874 3569999999999
Q ss_pred HHHHHHHHHHHhcc----cceeeeCCcccC------CCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccc
Q psy6275 112 LSNQKYREFEEQFK----DVGLITGDVTIN------PSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERG 181 (391)
Q Consensus 112 L~~q~~~~~~~~~~----~v~~~~g~~~~~------~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~ 181 (391)
|+.|+++.+.++.. .+..++|+.... .+++|+|+||+++...+......+.+++++|+||||++.++++.
T Consensus 94 L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~ 173 (224)
T 1qde_A 94 LALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFK 173 (224)
T ss_dssp HHHHHHHHHHHHTTTSCCCEEEECC----------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhhhhhH
Confidence 99999999998865 455566665432 24799999999999998887777889999999999999888888
Q ss_pred hhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHHhccccCCCeeEee
Q psy6275 182 YVWEETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVY 226 (391)
Q Consensus 182 ~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~~ 226 (391)
..+..++..++.+.|+++||||+++. ..+.+ .+..+|..+..
T Consensus 174 ~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~---~~~~~p~~i~~ 216 (224)
T 1qde_A 174 EQIYQIFTLLPPTTQVVLLSATMPNDVLEVTT---KFMRNPVRILV 216 (224)
T ss_dssp HHHHHHHHHSCTTCEEEEEESSCCHHHHHHHH---HHCSSCEEEC-
T ss_pred HHHHHHHHhCCccCeEEEEEeecCHHHHHHHH---HHCCCCEEEEe
Confidence 88888998888899999999999876 34443 34456655543
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-30 Score=233.57 Aligned_cols=187 Identities=20% Similarity=0.230 Sum_probs=158.2
Q ss_pred CCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh-------cCCeEEEEc
Q psy6275 36 PDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK-------QSQRVIYTT 107 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~-------~~~~vlvl~ 107 (391)
.+|+.+++++.+.+.+...||. |+++|.++++.+.+++++++++|||+|||++|++|++..+. .+.+++|++
T Consensus 25 ~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~ 104 (236)
T 2pl3_A 25 TRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIIS 104 (236)
T ss_dssp SBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEEC
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEe
Confidence 4688999999999999999997 99999999999999999999999999999999999988762 467999999
Q ss_pred ccHHHHHHHHHHHHHhcc----cceeeeCCcccC------CCCCEEEEcHHHHHHHHhcC-ccccCccceEEEecccccC
Q psy6275 108 PIKALSNQKYREFEEQFK----DVGLITGDVTIN------PSSSCLIMTTEILRNMLYRG-SEITREVGWVIFDEIHYMR 176 (391)
Q Consensus 108 P~~~L~~q~~~~~~~~~~----~v~~~~g~~~~~------~~~~I~v~Tp~~l~~~l~~~-~~~l~~~~~lViDE~h~~~ 176 (391)
|+++|+.|+++.++++.. .+..++|+.... .+++|+|+||+++...+... ...+.+++++|+||||++.
T Consensus 105 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~ 184 (236)
T 2pl3_A 105 PTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRIL 184 (236)
T ss_dssp SSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHh
Confidence 999999999999999875 456677765432 36799999999999887764 3557899999999999998
Q ss_pred ccccchhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHHhccccCCCeeEe
Q psy6275 177 DKERGYVWEETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVV 225 (391)
Q Consensus 177 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~ 225 (391)
++++...+..++..++.+.|+++||||+++. ..+++ .+..+|..+.
T Consensus 185 ~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~---~~~~~p~~i~ 231 (236)
T 2pl3_A 185 DMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLAR---LSLKNPEYVW 231 (236)
T ss_dssp HTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHH---HSCSSCEEEE
T ss_pred cCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHH---HhCCCCEEEE
Confidence 8888888999999998899999999999866 44554 3445665554
|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-30 Score=238.55 Aligned_cols=170 Identities=18% Similarity=0.263 Sum_probs=148.5
Q ss_pred cccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh-------cCCeEEEEcccHHHHH
Q psy6275 43 LAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK-------QSQRVIYTTPIKALSN 114 (391)
Q Consensus 43 l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~-------~~~~vlvl~P~~~L~~ 114 (391)
+++.+.+.+..+||. |+++|.++++.+..+++++++||||+|||++|++|++..+. .+.+++|++|+++|+.
T Consensus 61 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~ 140 (262)
T 3ly5_A 61 VNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAM 140 (262)
T ss_dssp CCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHH
T ss_pred cCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHH
Confidence 777888888999998 99999999999999999999999999999999999998764 4788999999999999
Q ss_pred HHHHHHHHhcc----cceeeeCCcccC-------CCCCEEEEcHHHHHHHHhcCc-cccCccceEEEecccccCccccch
Q psy6275 115 QKYREFEEQFK----DVGLITGDVTIN-------PSSSCLIMTTEILRNMLYRGS-EITREVGWVIFDEIHYMRDKERGY 182 (391)
Q Consensus 115 q~~~~~~~~~~----~v~~~~g~~~~~-------~~~~I~v~Tp~~l~~~l~~~~-~~l~~~~~lViDE~h~~~~~~~~~ 182 (391)
|+++.+++++. .+..++|+.... ..++|+|+||+++..++.... ..+.+++++|+||||++.+++++.
T Consensus 141 q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~~~~~ 220 (262)
T 3ly5_A 141 QTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEE 220 (262)
T ss_dssp HHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHTTCHH
T ss_pred HHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhhhhHHH
Confidence 99999999876 455677765532 357999999999998887653 567899999999999999988999
Q ss_pred hHHHHHHHhCCCCcEEEEcccCCCh-HHHHH
Q psy6275 183 VWEETLILLSDNVRFVFLSATIPNA-SQFAQ 212 (391)
Q Consensus 183 ~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~ 212 (391)
.+..++..++..+|+++||||+++. +.+++
T Consensus 221 ~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~ 251 (262)
T 3ly5_A 221 ELKQIIKLLPTRRQTMLFSATQTRKVEDLAR 251 (262)
T ss_dssp HHHHHHHHSCSSSEEEEECSSCCHHHHHHHH
T ss_pred HHHHHHHhCCCCCeEEEEEecCCHHHHHHHH
Confidence 9999999999899999999999876 55555
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-30 Score=233.61 Aligned_cols=187 Identities=17% Similarity=0.189 Sum_probs=158.6
Q ss_pred CCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc---CCeEEEEcccHH
Q psy6275 36 PDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ---SQRVIYTTPIKA 111 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~---~~~vlvl~P~~~ 111 (391)
.+|..+++++.+.+.+..+||. |+++|.++++.+.+++++++.||||+|||++|++|++..+.. +.+++|++|+++
T Consensus 43 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~ 122 (249)
T 3ber_A 43 KTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRE 122 (249)
T ss_dssp CCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHH
T ss_pred CCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHH
Confidence 4789999999999999999996 999999999999999999999999999999999999887643 467999999999
Q ss_pred HHHHHHHHHHHhcc----cceeeeCCccc-------CCCCCEEEEcHHHHHHHHhc-CccccCccceEEEecccccCccc
Q psy6275 112 LSNQKYREFEEQFK----DVGLITGDVTI-------NPSSSCLIMTTEILRNMLYR-GSEITREVGWVIFDEIHYMRDKE 179 (391)
Q Consensus 112 L~~q~~~~~~~~~~----~v~~~~g~~~~-------~~~~~I~v~Tp~~l~~~l~~-~~~~l~~~~~lViDE~h~~~~~~ 179 (391)
|+.|+++.++++.. .+..+.|+... ...++|+|+||+++.+.+.. ....+.+++++|+||||++.+++
T Consensus 123 L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~ 202 (249)
T 3ber_A 123 LAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMD 202 (249)
T ss_dssp HHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTT
T ss_pred HHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhccC
Confidence 99999999998865 45667776542 24689999999999988876 34467899999999999998888
Q ss_pred cchhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHHhccccCCCeeEe
Q psy6275 180 RGYVWEETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVV 225 (391)
Q Consensus 180 ~~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~ 225 (391)
+...+..++..++.+.|+++||||+++. ..+.+ .+..+|..+.
T Consensus 203 ~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~---~~l~~p~~i~ 246 (249)
T 3ber_A 203 FETEVDKILKVIPRDRKTFLFSATMTKKVQKLQR---AALKNPVKCA 246 (249)
T ss_dssp CHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHH---HHCSSCEEEE
T ss_pred hHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHH---HHCCCCEEEE
Confidence 8888999999888889999999999866 44444 3445666553
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-29 Score=252.66 Aligned_cols=152 Identities=22% Similarity=0.275 Sum_probs=125.3
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc-----CCeEEEEcccHHHHHHHHHHHHHhcc----
Q psy6275 55 PFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ-----SQRVIYTTPIKALSNQKYREFEEQFK---- 125 (391)
Q Consensus 55 ~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~-----~~~vlvl~P~~~L~~q~~~~~~~~~~---- 125 (391)
+|+|+++|.++++.+.+++++++++|||+|||++|++|+++.+.. ++++||++|+++|+.|+...+.+++.
T Consensus 2 ~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 81 (555)
T 3tbk_A 2 PLKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGY 81 (555)
T ss_dssp CCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCc
Confidence 468999999999999999999999999999999999999998865 78999999999999999999999864
Q ss_pred cceeeeCCcccCC-------CCCEEEEcHHHHHHHHhcCcc-ccCccceEEEecccccCcccc-chhHHHHHHHh-----
Q psy6275 126 DVGLITGDVTINP-------SSSCLIMTTEILRNMLYRGSE-ITREVGWVIFDEIHYMRDKER-GYVWEETLILL----- 191 (391)
Q Consensus 126 ~v~~~~g~~~~~~-------~~~I~v~Tp~~l~~~l~~~~~-~l~~~~~lViDE~h~~~~~~~-~~~~~~i~~~~----- 191 (391)
.+..++|+..... .++|+|+||+++...+..... .+.+++++|+||||++.+.+. ...+...+...
T Consensus 82 ~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~ 161 (555)
T 3tbk_A 82 NIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESR 161 (555)
T ss_dssp CEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSSCC
T ss_pred EEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhcccc
Confidence 6777888876544 379999999999999887665 688999999999999976531 11111222221
Q ss_pred CCCCcEEEEcccCCC
Q psy6275 192 SDNVRFVFLSATIPN 206 (391)
Q Consensus 192 ~~~~~~i~~SAT~~~ 206 (391)
....++++||||+..
T Consensus 162 ~~~~~~l~lSAT~~~ 176 (555)
T 3tbk_A 162 DPLPQVVGLTASVGV 176 (555)
T ss_dssp SCCCEEEEEESCCCC
T ss_pred CCCCeEEEEecCccc
Confidence 245799999999965
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.97 E-value=8.1e-30 Score=226.42 Aligned_cols=186 Identities=18% Similarity=0.196 Sum_probs=156.5
Q ss_pred CCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc---CCeEEEEcccHH
Q psy6275 36 PDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ---SQRVIYTTPIKA 111 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~---~~~vlvl~P~~~ 111 (391)
.+|..+++++.+.+.+.+.||+ |+++|.++++.+.+++++++.+|||+|||++|+++++..+.. +.+++|++|+++
T Consensus 14 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 93 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 93 (220)
T ss_dssp CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHH
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHH
Confidence 4688999999999999999998 999999999999999999999999999999999999988754 458999999999
Q ss_pred HHHHHHHHHHHhcc-----cceeeeCCccc--------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCc-
Q psy6275 112 LSNQKYREFEEQFK-----DVGLITGDVTI--------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRD- 177 (391)
Q Consensus 112 L~~q~~~~~~~~~~-----~v~~~~g~~~~--------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~- 177 (391)
|+.|+++.++++.. .+..++|+... ...++|+|+||+++..++......+.+++++|+||||++.+
T Consensus 94 L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~ 173 (220)
T 1t6n_A 94 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQ 173 (220)
T ss_dssp HHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSS
T ss_pred HHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhcc
Confidence 99999999998863 56667776542 12469999999999998888777788999999999999876
Q ss_pred cccchhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHHhccccCCCeeE
Q psy6275 178 KERGYVWEETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHV 224 (391)
Q Consensus 178 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v 224 (391)
.++...+..++..++.+.|++++|||+++. ..+.+ .+..+|..+
T Consensus 174 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~---~~~~~p~~i 218 (220)
T 1t6n_A 174 LDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR---KFMQDPMEI 218 (220)
T ss_dssp HHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHH---TTCSSCEEE
T ss_pred cCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHH---HHcCCCeEE
Confidence 456666777777788889999999999876 55554 344555544
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-28 Score=253.79 Aligned_cols=155 Identities=23% Similarity=0.270 Sum_probs=124.3
Q ss_pred CCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcC-----CeEEEEcccHHHHHHHHHHHH
Q psy6275 48 EKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQS-----QRVIYTTPIKALSNQKYREFE 121 (391)
Q Consensus 48 ~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~-----~~vlvl~P~~~L~~q~~~~~~ 121 (391)
...+..+||. |+++|.++++.+.+++++++++|||+|||++|++++++.+..+ +++||++|+++|+.|+.+.++
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~ 82 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFS 82 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHH
Confidence 3467788886 9999999999999999999999999999999999998877542 799999999999999999999
Q ss_pred Hhcc----cceeeeCCcccC-------CCCCEEEEcHHHHHHHHhcCcc-ccCccceEEEecccccCccccchhHHHHH-
Q psy6275 122 EQFK----DVGLITGDVTIN-------PSSSCLIMTTEILRNMLYRGSE-ITREVGWVIFDEIHYMRDKERGYVWEETL- 188 (391)
Q Consensus 122 ~~~~----~v~~~~g~~~~~-------~~~~I~v~Tp~~l~~~l~~~~~-~l~~~~~lViDE~h~~~~~~~~~~~~~i~- 188 (391)
+++. .+..++|+.... ..++|+|+||+++.+.+..... .+.+++++|+||||++.+.. .+..++
T Consensus 83 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~---~~~~i~~ 159 (696)
T 2ykg_A 83 KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQH---PYNMIMF 159 (696)
T ss_dssp HHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTC---HHHHHHH
T ss_pred HHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcc---cHHHHHH
Confidence 9974 667788876543 2579999999999999887655 67899999999999987542 222222
Q ss_pred ---HH-h----CCCCcEEEEcccCC
Q psy6275 189 ---IL-L----SDNVRFVFLSATIP 205 (391)
Q Consensus 189 ---~~-~----~~~~~~i~~SAT~~ 205 (391)
.. + +...++++||||+.
T Consensus 160 ~~l~~~~~~~~~~~~~il~LTATp~ 184 (696)
T 2ykg_A 160 NYLDQKLGGSSGPLPQVIGLTASVG 184 (696)
T ss_dssp HHHHHHHTTCCSCCCEEEEEESCCC
T ss_pred HHHHHhhcccCCCCCeEEEEeCccc
Confidence 11 1 35789999999996
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-29 Score=228.43 Aligned_cols=184 Identities=21% Similarity=0.242 Sum_probs=147.2
Q ss_pred ccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh----cCCeEEEEcccHHHHHHH
Q psy6275 42 PLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK----QSQRVIYTTPIKALSNQK 116 (391)
Q Consensus 42 ~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~----~~~~vlvl~P~~~L~~q~ 116 (391)
++++.+.+.+.+.||. |+++|.++++.+.+++++++.||||+|||++|++|++..+. .+.+++|++|+++|+.|+
T Consensus 35 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~ 114 (245)
T 3dkp_A 35 KINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQI 114 (245)
T ss_dssp CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHH
Confidence 7888899999999997 99999999999999999999999999999999999998875 356899999999999999
Q ss_pred HHHHHHhcc----cceeeeCCcc--------cCCCCCEEEEcHHHHHHHHhcC--ccccCccceEEEecccccCcc---c
Q psy6275 117 YREFEEQFK----DVGLITGDVT--------INPSSSCLIMTTEILRNMLYRG--SEITREVGWVIFDEIHYMRDK---E 179 (391)
Q Consensus 117 ~~~~~~~~~----~v~~~~g~~~--------~~~~~~I~v~Tp~~l~~~l~~~--~~~l~~~~~lViDE~h~~~~~---~ 179 (391)
++.+++++. .+..++|+.. ....++|+|+||+++..++... ...+.+++++|+||||++.++ +
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~ 194 (245)
T 3dkp_A 115 HRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTG 194 (245)
T ss_dssp HHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--C
T ss_pred HHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhccccccc
Confidence 999999876 3333443322 1345789999999999988776 356789999999999999774 3
Q ss_pred cchhHHHHHHHh-CCCCcEEEEcccCCChHHHHHHhccccCCCeeEeee
Q psy6275 180 RGYVWEETLILL-SDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYT 227 (391)
Q Consensus 180 ~~~~~~~i~~~~-~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~ 227 (391)
+...+..++..+ +.+.|+++||||+++. +.+|+..+..+|..+...
T Consensus 195 ~~~~~~~i~~~~~~~~~~~~~~SAT~~~~--v~~~~~~~l~~p~~i~~~ 241 (245)
T 3dkp_A 195 FRDQLASIFLACTSHKVRRAMFSATFAYD--VEQWCKLNLDNVISVSIG 241 (245)
T ss_dssp HHHHHHHHHHHCCCTTCEEEEEESSCCHH--HHHHHHHHSSSCEEEEEC
T ss_pred HHHHHHHHHHhcCCCCcEEEEEeccCCHH--HHHHHHHhCCCCEEEEeC
Confidence 444555555444 4578999999999765 445555556677665543
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.3e-28 Score=254.06 Aligned_cols=151 Identities=22% Similarity=0.281 Sum_probs=121.1
Q ss_pred cCCC-CCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc-----CCeEEEEcccHHHHHHHHHHHHHhcc-
Q psy6275 53 EYPF-VLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ-----SQRVIYTTPIKALSNQKYREFEEQFK- 125 (391)
Q Consensus 53 ~~~~-~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~-----~~~vlvl~P~~~L~~q~~~~~~~~~~- 125 (391)
.+|+ +|+++|.++++.+.+++++++++|||+|||++|++|++..+.. ++++||++|+++|+.|+...+++++.
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~ 322 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhccc
Confidence 3455 4999999999999999999999999999999999999998865 78999999999999999999999864
Q ss_pred ---cceeeeCCcccCC-------CCCEEEEcHHHHHHHHhcCcc-ccCccceEEEecccccCccccchhHHHHHH----H
Q psy6275 126 ---DVGLITGDVTINP-------SSSCLIMTTEILRNMLYRGSE-ITREVGWVIFDEIHYMRDKERGYVWEETLI----L 190 (391)
Q Consensus 126 ---~v~~~~g~~~~~~-------~~~I~v~Tp~~l~~~l~~~~~-~l~~~~~lViDE~h~~~~~~~~~~~~~i~~----~ 190 (391)
.+..++|+..... .++|+|+||+++.+.+..... .+.+++++|+||||++.+.+. +..++. .
T Consensus 323 ~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~---~~~i~~~~~~~ 399 (797)
T 4a2q_A 323 QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP---YNVLMTRYLEQ 399 (797)
T ss_dssp GTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSH---HHHHHHHHHHH
T ss_pred CCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCcc---HHHHHHHHHHH
Confidence 6677888875443 579999999999998887665 688999999999999876532 332222 1
Q ss_pred -h---CCCCcEEEEcccCCC
Q psy6275 191 -L---SDNVRFVFLSATIPN 206 (391)
Q Consensus 191 -~---~~~~~~i~~SAT~~~ 206 (391)
+ ....++++||||+..
T Consensus 400 ~~~~~~~~~~~l~lSATp~~ 419 (797)
T 4a2q_A 400 KFNSASQLPQILGLTASVGV 419 (797)
T ss_dssp HHTTCCCCCEEEEEESCCCC
T ss_pred hhccCCCCCeEEEEcCCccc
Confidence 1 456899999999953
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-27 Score=235.68 Aligned_cols=160 Identities=18% Similarity=0.223 Sum_probs=129.9
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh-cCCeEEEEcccHHHHHHHHHHHHHhcc----ccee
Q psy6275 55 PFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK-QSQRVIYTTPIKALSNQKYREFEEQFK----DVGL 129 (391)
Q Consensus 55 ~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~-~~~~vlvl~P~~~L~~q~~~~~~~~~~----~v~~ 129 (391)
+++|+++|.++++.+.++ ++++.+|||+|||++++.++...+. .+.++||++|+++|+.|+.+++.++++ .+..
T Consensus 7 ~~~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~ 85 (494)
T 1wp9_A 7 LIQPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVA 85 (494)
T ss_dssp HHCCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEE
T ss_pred CCCccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEE
Confidence 457999999999999888 9999999999999999999887764 678999999999999999999999975 5677
Q ss_pred eeCCcccC------CCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEccc
Q psy6275 130 ITGDVTIN------PSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSAT 203 (391)
Q Consensus 130 ~~g~~~~~------~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 203 (391)
++|+.... ...+|+|+||+.+...+......+.+++++|+||||++.+......+...+.......++++||||
T Consensus 86 ~~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTaT 165 (494)
T 1wp9_A 86 LTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTAS 165 (494)
T ss_dssp ECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEESC
T ss_pred eeCCcchhhhhhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeEEEEecC
Confidence 88876532 257899999999999888776678899999999999987543333333344445667899999999
Q ss_pred CCCh-HHHHHHhc
Q psy6275 204 IPNA-SQFAQWVS 215 (391)
Q Consensus 204 ~~~~-~~~~~~l~ 215 (391)
+.+. ..+.+++.
T Consensus 166 p~~~~~~~~~l~~ 178 (494)
T 1wp9_A 166 PGSTPEKIMEVIN 178 (494)
T ss_dssp SCSSHHHHHHHHH
T ss_pred CCCCcHHHHHHHH
Confidence 9854 45555544
|
| >4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=9e-28 Score=248.60 Aligned_cols=152 Identities=24% Similarity=0.279 Sum_probs=118.6
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcC------CeEEEEcccHHHHHHH-HHHHHHhcc--
Q psy6275 55 PFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQS------QRVIYTTPIKALSNQK-YREFEEQFK-- 125 (391)
Q Consensus 55 ~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~------~~vlvl~P~~~L~~q~-~~~~~~~~~-- 125 (391)
+++|+++|.++++.+.+++++++++|||+|||++|++|++..+..+ +++||++|+++|+.|+ .+.+++++.
T Consensus 5 ~~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~ 84 (699)
T 4gl2_A 5 MLQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKW 84 (699)
T ss_dssp --CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTTT
T ss_pred CCCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCcC
Confidence 5789999999999999999999999999999999999998876442 8999999999999999 999999986
Q ss_pred -cceeeeCCcccC-------CCCCEEEEcHHHHHHHHh------cCccccCccceEEEecccccCccc-cchhHHHHHHH
Q psy6275 126 -DVGLITGDVTIN-------PSSSCLIMTTEILRNMLY------RGSEITREVGWVIFDEIHYMRDKE-RGYVWEETLIL 190 (391)
Q Consensus 126 -~v~~~~g~~~~~-------~~~~I~v~Tp~~l~~~l~------~~~~~l~~~~~lViDE~h~~~~~~-~~~~~~~i~~~ 190 (391)
.+..++|+.... ...+|+|+||+++.+.+. .....+..+++||+||||++.... +...+...+..
T Consensus 85 ~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~~ 164 (699)
T 4gl2_A 85 YRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQ 164 (699)
T ss_dssp SCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHHH
T ss_pred ceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHHHh
Confidence 677788887654 358999999999998873 334567899999999999985432 33333322222
Q ss_pred h----C---------CCCcEEEEcccCCC
Q psy6275 191 L----S---------DNVRFVFLSATIPN 206 (391)
Q Consensus 191 ~----~---------~~~~~i~~SAT~~~ 206 (391)
. . +.+++++||||+..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~il~lTATp~~ 193 (699)
T 4gl2_A 165 KLKNNRLKKENKPVIPLPQILGLTASPGV 193 (699)
T ss_dssp HHHHHHHHC----CCCCCEEEEECSCCCC
T ss_pred hhcccccccccccCCCCCEEEEecccccc
Confidence 1 1 56899999999986
|
| >1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-28 Score=262.82 Aligned_cols=258 Identities=15% Similarity=0.121 Sum_probs=178.0
Q ss_pred CccCCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHH-hcCCeEEEEcccHHHHHHHHHHHHHhcc----
Q psy6275 51 AREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSL-KQSQRVIYTTPIKALSNQKYREFEEQFK---- 125 (391)
Q Consensus 51 ~~~~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l-~~~~~vlvl~P~~~L~~q~~~~~~~~~~---- 125 (391)
.+.+||.| ++|.++++.+.+|+|++++||||||||+ |.+|++..+ ..+++++|++||++|+.|+++.++.++.
T Consensus 51 ~~~~g~~p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i 128 (1054)
T 1gku_B 51 RKCVGEPR-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGV 128 (1054)
T ss_dssp HTTTCSCC-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCC
T ss_pred HHhcCCCH-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCC
Confidence 34578999 9999999999999999999999999998 777766654 5678999999999999999999998875
Q ss_pred ----cceeeeCCcccCC---------CCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhC
Q psy6275 126 ----DVGLITGDVTINP---------SSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLS 192 (391)
Q Consensus 126 ----~v~~~~g~~~~~~---------~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~ 192 (391)
.++.++|+..... +++|+|+||+++.+++.+ +++++++|+||||++++ ++..++.++..++
T Consensus 129 ~~~~~v~~~~Gg~~~~~~~~~~~~l~~~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~--~~~~~~~i~~~lg 202 (1054)
T 1gku_B 129 GTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILK--ASKNVDKLLHLLG 202 (1054)
T ss_dssp SGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHT--STHHHHHHHHHTT
T ss_pred CccceEEEEeCCCChhhHHHHHhhccCCCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhh--ccccHHHHHHHhC
Confidence 3456777654321 289999999999987765 66999999999999987 4777887777663
Q ss_pred -----------CCCcEEEEcccCCChHHHHHHh-ccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhch
Q psy6275 193 -----------DNVRFVFLSATIPNASQFAQWV-SHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNY 260 (391)
Q Consensus 193 -----------~~~~~i~~SAT~~~~~~~~~~l-~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~ 260 (391)
...|++++|||++....+...+ ..... +.+........++.++++..
T Consensus 203 f~~~~~~~~~~~~~q~~l~SAT~t~~~~~~~~~~~~~~~--i~v~~~~~~~~~i~~~~~~~------------------- 261 (1054)
T 1gku_B 203 FHYDLKTKSWVGEARGCLMVSTATAKKGKKAELFRQLLN--FDIGSSRITVRNVEDVAVND------------------- 261 (1054)
T ss_dssp EEEETTTTEEEECCSSEEEECCCCSCCCTTHHHHHHHHC--CCCSCCEECCCCEEEEEESC-------------------
T ss_pred cchhhhhhhcccCCceEEEEecCCCchhHHHHHhhcceE--EEccCcccCcCCceEEEech-------------------
Confidence 4688999999987753222221 11110 01110111122344444310
Q ss_pred HHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCCh---HH
Q psy6275 261 QVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNET---EE 337 (391)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~~---~~ 337 (391)
++...+.+.+... +.++||||+|++.|+.++..|+.. +.+. ..
T Consensus 262 --------------------------------~k~~~L~~ll~~~-~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~ 307 (1054)
T 1gku_B 262 --------------------------------ESISTLSSILEKL-GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTAT 307 (1054)
T ss_dssp --------------------------------CCTTTTHHHHTTS-CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTS
T ss_pred --------------------------------hHHHHHHHHHhhc-CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEecc
Confidence 1111333444443 368999999999999999999876 4332 23
Q ss_pred HHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhccC
Q psy6275 338 VKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHG 378 (391)
Q Consensus 338 r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~ 378 (391)
+..+.+.|++ ..++|++|. .-|+++++|||++++
T Consensus 308 ~~~~l~~F~~G~~~VLVaTa-------s~Tdv~~rGIDip~V 342 (1054)
T 1gku_B 308 KKGDYEKFVEGEIDHLIGTA-------HYYGTLVRGLDLPER 342 (1054)
T ss_dssp SSHHHHHHHHTSCSEEEEEC-------C------CCSCCTTT
T ss_pred HHHHHHHHHcCCCcEEEEec-------CCCCeeEeccccCCc
Confidence 3455666666 667777710 002599999999985
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.3e-27 Score=249.38 Aligned_cols=148 Identities=22% Similarity=0.262 Sum_probs=120.4
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc-----CCeEEEEcccHHHHHHHHHHHHHhcc----c
Q psy6275 56 FVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ-----SQRVIYTTPIKALSNQKYREFEEQFK----D 126 (391)
Q Consensus 56 ~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~-----~~~vlvl~P~~~L~~q~~~~~~~~~~----~ 126 (391)
++|+++|.++++.+.+|+++++++|||+|||++|++|++..+.. ++++||++|+++|+.|++..+++++. .
T Consensus 247 ~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~ 326 (936)
T 4a2w_A 247 KKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYS 326 (936)
T ss_dssp -CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCce
Confidence 35999999999999999999999999999999999999888765 78999999999999999999999864 6
Q ss_pred ceeeeCCcccCC-------CCCEEEEcHHHHHHHHhcCcc-ccCccceEEEecccccCccccchhHHHHHHHh-------
Q psy6275 127 VGLITGDVTINP-------SSSCLIMTTEILRNMLYRGSE-ITREVGWVIFDEIHYMRDKERGYVWEETLILL------- 191 (391)
Q Consensus 127 v~~~~g~~~~~~-------~~~I~v~Tp~~l~~~l~~~~~-~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~------- 191 (391)
+..++|+..... .++|+|+||+++.+.+..... .+.+++++|+||||++...+ . +..++..+
T Consensus 327 v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~--~-~~~i~~~~~~~~~~~ 403 (936)
T 4a2w_A 327 VQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNH--P-YNVLMTRYLEQKFNS 403 (936)
T ss_dssp EEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTC--H-HHHHHHHHHHHHHTT
T ss_pred EEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCc--c-HHHHHHHHHHHhhcc
Confidence 677888875443 478999999999998887665 67889999999999987653 2 33332211
Q ss_pred -CCCCcEEEEcccCCC
Q psy6275 192 -SDNVRFVFLSATIPN 206 (391)
Q Consensus 192 -~~~~~~i~~SAT~~~ 206 (391)
....++++||||+..
T Consensus 404 ~~~~~~~l~LSATp~~ 419 (936)
T 4a2w_A 404 ASQLPQILGLTASVGV 419 (936)
T ss_dssp CSCCCEEEEEESCCCC
T ss_pred CCCcCeEEEecCCccc
Confidence 456899999999953
|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-26 Score=231.92 Aligned_cols=274 Identities=15% Similarity=0.155 Sum_probs=178.2
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcC-CeEEEEcccHHHHHHHHHHHHHhcc----ccee
Q psy6275 55 PFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQS-QRVIYTTPIKALSNQKYREFEEQFK----DVGL 129 (391)
Q Consensus 55 ~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~-~~vlvl~P~~~L~~q~~~~~~~~~~----~v~~ 129 (391)
.++|+++|.++++.+.+++++++++|||+|||++++.++...+..+ +++||++|+++|+.|+++.+.++.. .+..
T Consensus 111 ~~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~ 190 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKK 190 (510)
T ss_dssp EECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEE
T ss_pred CCCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEE
Confidence 3479999999999998889999999999999999999988877554 4999999999999999999988743 4566
Q ss_pred eeCCcccC----CCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEcccCC
Q psy6275 130 ITGDVTIN----PSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIP 205 (391)
Q Consensus 130 ~~g~~~~~----~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 205 (391)
++|+.... ...+|+|+||+.+.. .....+.+++++|+||||++.. ..+..++..+....++++||||++
T Consensus 191 ~~~~~~~~~~~~~~~~I~i~T~~~l~~---~~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~~~~l~lSATp~ 263 (510)
T 2oca_A 191 IGGGASKDDKYKNDAPVVVGTWQTVVK---QPKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFKFGLSGSLR 263 (510)
T ss_dssp CGGGCCTTGGGCTTCSEEEEEHHHHTT---SCGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTCCEEEEEESCGG
T ss_pred EecCCccccccccCCcEEEEeHHHHhh---chhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccCcEEEEEEeCCC
Confidence 77776654 678999999997643 3335577899999999999864 356677777777889999999997
Q ss_pred Ch-HH---HHHHhccccCCCeeEeee-----CCCCcCceEeeccCCCCCeeeeecCchh---hhhchHHHHHHhhhhhhh
Q psy6275 206 NA-SQ---FAQWVSHLHHQPCHVVYT-----DYRPTPLQHYLFPNGGDGIHLIVDDNKF---KEHNYQVAMNVLANAGDA 273 (391)
Q Consensus 206 ~~-~~---~~~~l~~~~~~~~~v~~~-----~~~~~~i~~~~~~~~~~~~~~~v~~~~~---~~~~~~~~~~~~~~~~~~ 273 (391)
+. .. +..+++ ........ .+...+.....+.+ ....... ....+...+..+...
T Consensus 264 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~--- 329 (510)
T 2oca_A 264 DGKANIMQYVGMFG----EIFKPVTTSKLMEDGQVTELKINSIFL-------RYPDEFTTKLKGKTYQEEIKIITGL--- 329 (510)
T ss_dssp GCSSCHHHHHHHHC----SEECCCCCC---------CCEEEEEEE-------ECCHHHHHHHTTCCHHHHHHHHHTC---
T ss_pred CCcccHHHhHHhhC----CeEEeeCHHHHhhCCcCCCceEEEEee-------cCChHHhccccccchHHHHHHHhcc---
Confidence 55 22 222222 11111111 00111111111100 0000000 001122211111100
Q ss_pred hccCCCCCCCCCCCCCCCcccHHHHHHHHHH---cCCCcEEEEEcchhhHHHHHHHhhccCC--------CChHHHHHHH
Q psy6275 274 AKAGDHKGGRKGGPKGGVQTNCFKIVKMIME---RNLAPVIVFSFSKKDCEIYAMQMAKLNF--------NETEEVKLVD 342 (391)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~~~~~iIF~~t~~~~~~la~~L~~~g~--------~~~~~r~~~~ 342 (391)
..+...+.+.+.. .++.++||||+ .++|+.+++.|.+.+. ....+|..+.
T Consensus 330 ------------------~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~ 390 (510)
T 2oca_A 330 ------------------SKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMK 390 (510)
T ss_dssp ------------------HHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHH
T ss_pred ------------------HHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHH
Confidence 0111223333333 35556777777 8999999999988633 3346788888
Q ss_pred HHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhccC
Q psy6275 343 DVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHG 378 (391)
Q Consensus 343 ~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~ 378 (391)
+.|++ ..++|++|- +++++|+|++.+
T Consensus 391 ~~f~~g~~~vLv~T~----------~~~~~GiDip~v 417 (510)
T 2oca_A 391 TLAENGKGIIIVASY----------GVFSTGISVKNL 417 (510)
T ss_dssp HHHHHCCSCEEEEEH----------HHHHHSCCCCSE
T ss_pred HHHhCCCCCEEEEEc----------ChhhcccccccC
Confidence 88877 456677661 499999998754
|
| >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=7.6e-27 Score=251.12 Aligned_cols=256 Identities=21% Similarity=0.250 Sum_probs=180.9
Q ss_pred CCccCCCCCcHHHHHHHHHHhc----CC--cEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHh
Q psy6275 50 PAREYPFVLDPFQKEAILCIEN----NQ--SVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQ 123 (391)
Q Consensus 50 ~~~~~~~~~~~~Q~~~i~~i~~----~~--~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~ 123 (391)
....++|++|++|.++++.+.+ ++ +++++||||+|||.+++.+++..+..+.+++|++||++|+.|+++.+.+.
T Consensus 596 ~~~~f~~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~ 675 (1151)
T 2eyq_A 596 FCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDR 675 (1151)
T ss_dssp HHHTCCSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHH
Confidence 3456799999999999998765 55 89999999999999999999888888999999999999999999999988
Q ss_pred cc----cceeeeCCccc-----------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHH
Q psy6275 124 FK----DVGLITGDVTI-----------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETL 188 (391)
Q Consensus 124 ~~----~v~~~~g~~~~-----------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~ 188 (391)
+. .+..+++.... ....+|+|+||+.+. ....+.+++++|+||+|++ +......+
T Consensus 676 ~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lvIiDEaH~~-----g~~~~~~l 745 (1151)
T 2eyq_A 676 FANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLLIVDEEHRF-----GVRHKERI 745 (1151)
T ss_dssp STTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEEEEESGGGS-----CHHHHHHH
T ss_pred hhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceEEEechHhc-----ChHHHHHH
Confidence 75 45556654331 236899999997653 2345789999999999985 44555666
Q ss_pred HHhCCCCcEEEEcccCCChHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHhh
Q psy6275 189 ILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLA 268 (391)
Q Consensus 189 ~~~~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 268 (391)
..++.+.++++||||+.... +...+.. ..+...+........++..++.... ..
T Consensus 746 ~~l~~~~~vl~lSATp~p~~-l~~~~~~-~~~~~~i~~~~~~r~~i~~~~~~~~--------------~~---------- 799 (1151)
T 2eyq_A 746 KAMRANVDILTLTATPIPRT-LNMAMSG-MRDLSIIATPPARRLAVKTFVREYD--------------SM---------- 799 (1151)
T ss_dssp HHHHTTSEEEEEESSCCCHH-HHHHHTT-TSEEEECCCCCCBCBCEEEEEEECC--------------HH----------
T ss_pred HHhcCCCCEEEEcCCCChhh-HHHHHhc-CCCceEEecCCCCccccEEEEecCC--------------HH----------
Confidence 66777899999999986542 2222211 1111111111111123333332111 00
Q ss_pred hhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhcc--CC--------CChHHH
Q psy6275 269 NAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKL--NF--------NETEEV 338 (391)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~--g~--------~~~~~r 338 (391)
.....+.+.+ ..+++++|||++++.++.+++.|++. +. ....+|
T Consensus 800 ------------------------~i~~~il~~l--~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR 853 (1151)
T 2eyq_A 800 ------------------------VVREAILREI--LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMREREL 853 (1151)
T ss_dssp ------------------------HHHHHHHHHH--TTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHH
T ss_pred ------------------------HHHHHHHHHH--hcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHH
Confidence 0011233322 23569999999999999999999875 22 234778
Q ss_pred HHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhccC
Q psy6275 339 KLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHG 378 (391)
Q Consensus 339 ~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~ 378 (391)
..+++.|++ ..++|++|+ ++++|||++.+
T Consensus 854 ~~il~~F~~g~~~VLVaT~-----------v~e~GiDip~v 883 (1151)
T 2eyq_A 854 ERVMNDFHHQRFNVLVCTT-----------IIETGIDIPTA 883 (1151)
T ss_dssp HHHHHHHHTTSCCEEEESS-----------TTGGGSCCTTE
T ss_pred HHHHHHHHcCCCcEEEECC-----------cceeeecccCC
Confidence 888888877 668888885 89999999854
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=7.2e-27 Score=230.92 Aligned_cols=293 Identities=15% Similarity=0.087 Sum_probs=181.6
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhccc-ceeeeC
Q psy6275 54 YPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKD-VGLITG 132 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~-v~~~~g 132 (391)
.+++|+++|.++++.+.+++++++++|||+|||++++.++... +.++||++|+++|+.|+.+++.++... ++.++|
T Consensus 90 ~~~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~---~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g 166 (472)
T 2fwr_A 90 AEISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL---STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSG 166 (472)
T ss_dssp CCCCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH---CSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSS
T ss_pred CCCCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc---CCCEEEEECCHHHHHHHHHHHHhCCCcceEEECC
Confidence 4568999999999999998999999999999999999888765 789999999999999999999995446 888888
Q ss_pred CcccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEcccCCChH----
Q psy6275 133 DVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNAS---- 208 (391)
Q Consensus 133 ~~~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~---- 208 (391)
+.. ...+|+|+||+.+...+.. ...+++++|+||||++.+..+. .++..++ ..+++++|||+.+..
T Consensus 167 ~~~--~~~~Ivv~T~~~l~~~~~~---~~~~~~liIvDEaH~~~~~~~~----~~~~~~~-~~~~l~lSATp~~~~~~~~ 236 (472)
T 2fwr_A 167 RIK--ELKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESYV----QIAQMSI-APFRLGLTATFEREDGRHE 236 (472)
T ss_dssp SCB--CCCSEEEEEHHHHHHTHHH---HTTTCSEEEEETGGGTTSTTTH----HHHHTCC-CSEEEEEESCCCCTTSGGG
T ss_pred CcC--CcCCEEEEEcHHHHHHHHH---hcCCCCEEEEECCcCCCChHHH----HHHHhcC-CCeEEEEecCccCCCCHHH
Confidence 764 3578999999998765532 1246999999999998765443 3444443 578999999997542
Q ss_pred HHHHHhccccCCCeeEeee----CCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhhh--ccCCCCCC
Q psy6275 209 QFAQWVSHLHHQPCHVVYT----DYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAA--KAGDHKGG 282 (391)
Q Consensus 209 ~~~~~l~~~~~~~~~v~~~----~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 282 (391)
.+..+++.. .+.... ..-..+.....+.++..... ...|.. -.......+...+... ........
T Consensus 237 ~l~~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~ 307 (472)
T 2fwr_A 237 ILKEVVGGK----VFELFPDSLAGKHLAKYTIKRIFVPLAEDE----RVEYEK-REKVYKQFLRARGITLRRAEDFNKIV 307 (472)
T ss_dssp SHHHHTCCE----EEECCHHHHTSCCCCSEEECCEEECCCHHH----HHHTTT-TTHHHHSCSSSCCCTTTCCSSSTTTT
T ss_pred HHHHHhCCe----EeecCHHHHhcCcCCCeEEEEEEcCCCHHH----HHHHHH-HHHHHHHHHHhcCccccchhhHHHHH
Confidence 233333211 110000 00000111000000000000 000000 0000000000000000 00000000
Q ss_pred CCCCCC-----------------CCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhcc---CCCChHHHHHHH
Q psy6275 283 RKGGPK-----------------GGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKL---NFNETEEVKLVD 342 (391)
Q Consensus 283 ~~~~~~-----------------~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~---g~~~~~~r~~~~ 342 (391)
...... .....++..+.+.+....+.++||||++++.++.+++.|.-. |-....+|+.+.
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~g~~~~~~R~~~~ 387 (472)
T 2fwr_A 308 MASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFLIPAITHRTSREEREEIL 387 (472)
T ss_dssp TTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTTCCBCCSSSCSHHHHTHH
T ss_pred HHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhCcceeeCCCCHHHHHHHH
Confidence 000000 001234566777777777789999999999999999999643 223447788888
Q ss_pred HHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhccCC
Q psy6275 343 DVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHGV 379 (391)
Q Consensus 343 ~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~~ 379 (391)
+.|++ ..++|++|+ ++++|+|++.++
T Consensus 388 ~~F~~g~~~vLv~T~-----------~~~~Gldlp~~~ 414 (472)
T 2fwr_A 388 EGFRTGRFRAIVSSQ-----------VLDEGIDVPDAN 414 (472)
T ss_dssp HHHHHSSCSBCBCSS-----------CCCSSSCSCCBS
T ss_pred HHHhCCCCCEEEEcC-----------chhcCcccccCc
Confidence 88887 667888775 899999998654
|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A | Back alignment and structure |
|---|
Probab=99.94 E-value=6.3e-28 Score=244.20 Aligned_cols=253 Identities=12% Similarity=0.050 Sum_probs=172.3
Q ss_pred cccccCCCCccCCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHH-hcCCeEEEEcccHHHHHHHHHHHH
Q psy6275 43 LAQSKEKPAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSL-KQSQRVIYTTPIKALSNQKYREFE 121 (391)
Q Consensus 43 l~~~~~~~~~~~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l-~~~~~vlvl~P~~~L~~q~~~~~~ 121 (391)
+++.+.+.+....-.++|+|+.+++.+.++++++++||||||||++|++|+++.+ ..+.++||++||++|+.|+++.++
T Consensus 157 ~~~~~~~~l~~~~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~PtreLa~Qi~~~l~ 236 (618)
T 2whx_A 157 KSGDYVSAITQAERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALR 236 (618)
T ss_dssp -----CEECBCCCCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT
T ss_pred chHHHHHHHhhccccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcChHHHHHHHHHHhc
Confidence 3444444444432238888888899999999999999999999999999988765 456799999999999999998876
Q ss_pred HhcccceeeeCC--cccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhC-CCCcEE
Q psy6275 122 EQFKDVGLITGD--VTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLS-DNVRFV 198 (391)
Q Consensus 122 ~~~~~v~~~~g~--~~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~-~~~~~i 198 (391)
.. .++...+. ........+.++|.+.+...+... ..+.+++++|+||||++ +.++...+..+...++ .+.|++
T Consensus 237 ~~--~v~~~~~~l~~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~i~~~l~~~~~q~i 312 (618)
T 2whx_A 237 GL--PIRYQTPAVKSDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAAI 312 (618)
T ss_dssp TS--CEEECCTTSSCCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHHTSCEEE
T ss_pred CC--ceeEecccceeccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-CccHHHHHHHHHHHhcccCccEE
Confidence 32 33321111 112334567889999888766554 34789999999999998 5556666777776664 679999
Q ss_pred EEcccCCChHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhhhccCC
Q psy6275 199 FLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGD 278 (391)
Q Consensus 199 ~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (391)
+||||++... ..+.. .++..+..... .+...
T Consensus 313 l~SAT~~~~~--~~~~~---~~~~~~~v~~~-----------~~~~~--------------------------------- 343 (618)
T 2whx_A 313 FMTATPPGST--DPFPQ---SNSPIEDIERE-----------IPERS--------------------------------- 343 (618)
T ss_dssp EECSSCTTCC--CSSCC---CSSCEEEEECC-----------CCSSC---------------------------------
T ss_pred EEECCCchhh--hhhhc---cCCceeeeccc-----------CCHHH---------------------------------
Confidence 9999997651 11111 01111110000 00000
Q ss_pred CCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCCh----HHHHHHHHHHHH-Hhhhcc
Q psy6275 279 HKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNET----EEVKLVDDVFSN-AMDVLS 353 (391)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~~----~~r~~~~~~~~~-~~~~l~ 353 (391)
...+++.+.+. .+++||||+|+++|+.+++.|++.|+.+. ++|..+.+.|++ ..++|+
T Consensus 344 ----------------~~~ll~~l~~~-~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~R~~~l~~F~~g~~~VLV 406 (618)
T 2whx_A 344 ----------------WNTGFDWITDY-QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTFDTEYPKTKLTDWDFVV 406 (618)
T ss_dssp ----------------CSSSCHHHHHC-CSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTTHHHHTTHHHHSCCSEEE
T ss_pred ----------------HHHHHHHHHhC-CCCEEEEECChhHHHHHHHHHHHcCCcEEEEChHHHHHHHHhhcCCCcEEEE
Confidence 00122223333 45999999999999999999998877653 567777777776 668888
Q ss_pred hhhccCcchHhHHHHHHhhhhhc
Q psy6275 354 EEDRKLPQIENILPLLRRGIGIH 376 (391)
Q Consensus 354 ~~d~~~~~~~~~~~~l~~GI~~~ 376 (391)
+|| ++++|||+.
T Consensus 407 aTd-----------v~~rGiDi~ 418 (618)
T 2whx_A 407 TTD-----------ISEMGANFR 418 (618)
T ss_dssp ECG-----------GGGTTCCCC
T ss_pred ECc-----------HHHcCcccC
Confidence 885 999999995
|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.94 E-value=3.3e-27 Score=243.49 Aligned_cols=256 Identities=25% Similarity=0.289 Sum_probs=175.6
Q ss_pred CCCCccCCCCCcHHHHHHHHHHhcC------CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHH
Q psy6275 48 EKPAREYPFVLDPFQKEAILCIENN------QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFE 121 (391)
Q Consensus 48 ~~~~~~~~~~~~~~Q~~~i~~i~~~------~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~ 121 (391)
...+..++|+||++|.++++.+.++ ++++++||||||||++|+++++..+..+.+++|++||++|+.|+++.+.
T Consensus 359 ~~~~~~lpf~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~ 438 (780)
T 1gm5_A 359 EEFIKSLPFKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTV 438 (780)
T ss_dssp HHHHHHSSSCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHH
Confidence 3455678999999999999988654 5899999999999999999999999889999999999999999999999
Q ss_pred Hhcc----cceeeeCCccc-----------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHH
Q psy6275 122 EQFK----DVGLITGDVTI-----------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEE 186 (391)
Q Consensus 122 ~~~~----~v~~~~g~~~~-----------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~ 186 (391)
+++. ++..++|+... ....+|+|+||+.+.+ ...+.+++++|+||+|++....+ .
T Consensus 439 ~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaHr~g~~qr-----~ 508 (780)
T 1gm5_A 439 ESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQHRFGVKQR-----E 508 (780)
T ss_dssp HHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCCCC----------C
T ss_pred HHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccchhhHHHH-----H
Confidence 9875 66778887653 2358999999987743 34578999999999998743221 1
Q ss_pred HHHHhCCCCcEEEEcccCCChHHHHH-HhccccCCCeeEeee-CCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHH
Q psy6275 187 TLILLSDNVRFVFLSATIPNASQFAQ-WVSHLHHQPCHVVYT-DYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAM 264 (391)
Q Consensus 187 i~~~~~~~~~~i~~SAT~~~~~~~~~-~l~~~~~~~~~v~~~-~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 264 (391)
.+.......++++||||+.... +.. +++. -...++.. .....++..++...
T Consensus 509 ~l~~~~~~~~vL~mSATp~p~t-l~~~~~g~---~~~s~i~~~p~~r~~i~~~~~~~----------------------- 561 (780)
T 1gm5_A 509 ALMNKGKMVDTLVMSATPIPRS-MALAFYGD---LDVTVIDEMPPGRKEVQTMLVPM----------------------- 561 (780)
T ss_dssp CCCSSSSCCCEEEEESSCCCHH-HHHHHTCC---SSCEEECCCCSSCCCCEECCCCS-----------------------
T ss_pred HHHHhCCCCCEEEEeCCCCHHH-HHHHHhCC---cceeeeeccCCCCcceEEEEecc-----------------------
Confidence 1222235689999999985542 222 2221 11122111 00111333322210
Q ss_pred HHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHH--cCCCcEEEEEcch--------hhHHHHHHHhhc---cC
Q psy6275 265 NVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIME--RNLAPVIVFSFSK--------KDCEIYAMQMAK---LN 331 (391)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~iIF~~t~--------~~~~~la~~L~~---~g 331 (391)
+....+.+.+.. ..+.+++|||++. ..++.+++.|.+ .+
T Consensus 562 ----------------------------~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~ 613 (780)
T 1gm5_A 562 ----------------------------DRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPE 613 (780)
T ss_dssp ----------------------------STHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC--
T ss_pred ----------------------------chHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCC
Confidence 011122233222 2356899999965 457888888877 22
Q ss_pred CCC--------hHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhccCC
Q psy6275 332 FNE--------TEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHGV 379 (391)
Q Consensus 332 ~~~--------~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~~ 379 (391)
+.+ .++|..+++.|++ ..++|++|+ ++++|||+++++
T Consensus 614 ~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~-----------vie~GIDiP~v~ 659 (780)
T 1gm5_A 614 FKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTT-----------VIEVGIDVPRAN 659 (780)
T ss_dssp -CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSS-----------CCCSCSCCTTCC
T ss_pred CcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECC-----------CCCccccCCCCC
Confidence 222 3677888888887 668888885 899999998654
|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-27 Score=234.83 Aligned_cols=241 Identities=14% Similarity=0.076 Sum_probs=160.4
Q ss_pred CCC-CcHHHHHHHHHHhcCCcE-EEEecCCcchHHHHHHHHHHH-HhcCCeEEEEcccHHHHHHHHHHHHHhcccceeee
Q psy6275 55 PFV-LDPFQKEAILCIENNQSV-LVSAHTSAGKTVVAEYAIASS-LKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLIT 131 (391)
Q Consensus 55 ~~~-~~~~Q~~~i~~i~~~~~~-li~apTGsGKT~~~~~~~~~~-l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~ 131 (391)
|+. ++|+|+ +|+.+.+++++ +++||||||||++|++|++.. +..+.+++|++||++|+.|+++.+... .++...
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~lvl~Ptr~La~Q~~~~l~g~--~v~~~~ 77 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPTRVVAAEMEEALRGL--PIRYQT 77 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTS--CEEECC
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHhcCc--eeeeee
Confidence 454 889985 78988887766 999999999999999988764 456789999999999999999887532 222222
Q ss_pred CCc--ccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHH-hCCCCcEEEEcccCCChH
Q psy6275 132 GDV--TINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLIL-LSDNVRFVFLSATIPNAS 208 (391)
Q Consensus 132 g~~--~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~-~~~~~~~i~~SAT~~~~~ 208 (391)
+.. .......|.++|++.+...+.+. ..+.+++++|+||||++ +..+......+... ...+.|+++||||++..
T Consensus 78 ~~~~~~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~- 154 (451)
T 2jlq_A 78 PAVKSDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMTATPPGS- 154 (451)
T ss_dssp TTCSCCCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSCTTC-
T ss_pred ccccccCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcCCCceEEEEccCCCcc-
Confidence 211 22335679999999988777654 45789999999999987 33333333333322 34579999999999753
Q ss_pred HHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCC
Q psy6275 209 QFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPK 288 (391)
Q Consensus 209 ~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (391)
...+ ....+..+... +..+...+.
T Consensus 155 -~~~~---~~~~~~~~~~~--~~~p~~~~~-------------------------------------------------- 178 (451)
T 2jlq_A 155 -TDPF---PQSNSPIEDIE--REIPERSWN-------------------------------------------------- 178 (451)
T ss_dssp -CCSS---CCCSSCEEEEE--CCCCSSCCS--------------------------------------------------
T ss_pred -chhh---hcCCCceEecC--ccCCchhhH--------------------------------------------------
Confidence 1111 11111111111 111100000
Q ss_pred CCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCCh----HHHHHHHHHHHH-HhhhcchhhccCcchH
Q psy6275 289 GGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNET----EEVKLVDDVFSN-AMDVLSEEDRKLPQIE 363 (391)
Q Consensus 289 ~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~~----~~r~~~~~~~~~-~~~~l~~~d~~~~~~~ 363 (391)
.+.+.+.+. .+++||||+|+++|+.+++.|...|+.+. +.++.+.+.|++ ...+|++|
T Consensus 179 --------~~~~~l~~~-~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~~~~~f~~g~~~vLVaT-------- 241 (451)
T 2jlq_A 179 --------TGFDWITDY-QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTFDTEYPKTKLTDWDFVVTT-------- 241 (451)
T ss_dssp --------SSCHHHHHC-CSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTHHHHGGGGGSSCCSEEEEC--------
T ss_pred --------HHHHHHHhC-CCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHHHHHHHhhccCCceEEEEC--------
Confidence 011222333 45999999999999999999998877653 445555555555 55667777
Q ss_pred hHHHHHHhhhhhcc
Q psy6275 364 NILPLLRRGIGIHH 377 (391)
Q Consensus 364 ~~~~~l~~GI~~~h 377 (391)
+++++|||++.
T Consensus 242 ---~v~~~GiDip~ 252 (451)
T 2jlq_A 242 ---DISEMGANFRA 252 (451)
T ss_dssp ---GGGGSSCCCCC
T ss_pred ---CHHHhCcCCCC
Confidence 49999999974
|
| >1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-26 Score=234.75 Aligned_cols=151 Identities=14% Similarity=0.147 Sum_probs=121.1
Q ss_pred cCCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc----cce
Q psy6275 53 EYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK----DVG 128 (391)
Q Consensus 53 ~~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~----~v~ 128 (391)
.+||.|+++|..+++.++.|+ +..++||+|||++|.+|++.....+..++|++||++||.|.++.+..++. .++
T Consensus 79 ~lG~~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~ 156 (844)
T 1tf5_A 79 VTGMFPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVG 156 (844)
T ss_dssp HHSCCCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred HcCCCCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEE
Confidence 468899999999999999998 99999999999999999885444577899999999999999999888766 667
Q ss_pred eeeCCcccC-----CCCCEEEEcHHHH-HHHHhcC------ccccCccceEEEecccccC-ccccc--------------
Q psy6275 129 LITGDVTIN-----PSSSCLIMTTEIL-RNMLYRG------SEITREVGWVIFDEIHYMR-DKERG-------------- 181 (391)
Q Consensus 129 ~~~g~~~~~-----~~~~I~v~Tp~~l-~~~l~~~------~~~l~~~~~lViDE~h~~~-~~~~~-------------- 181 (391)
.+.|+.... ..++|+|+||+++ ++++... ...++.+.++|+||||.|+ |.++.
T Consensus 157 ~i~gg~~~~~r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~~~~~ 236 (844)
T 1tf5_A 157 LNLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKSTKL 236 (844)
T ss_dssp ECCTTSCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEECCCHH
T ss_pred EEeCCCCHHHHHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCcccchhH
Confidence 777775532 2479999999999 5555432 2456889999999999986 65432
Q ss_pred -hhHHHHHHHhC---------CCCcEE-----------------EEcccCC
Q psy6275 182 -YVWEETLILLS---------DNVRFV-----------------FLSATIP 205 (391)
Q Consensus 182 -~~~~~i~~~~~---------~~~~~i-----------------~~SAT~~ 205 (391)
..+..++..++ ...|+. ++|||.+
T Consensus 237 ~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~ 287 (844)
T 1tf5_A 237 YVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHV 287 (844)
T ss_dssp HHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGH
T ss_pred HHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccc
Confidence 44566777775 357777 8899975
|
| >2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-26 Score=232.82 Aligned_cols=124 Identities=15% Similarity=0.142 Sum_probs=104.4
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc----ccee
Q psy6275 54 YPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK----DVGL 129 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~----~v~~ 129 (391)
+|..|+++|..+++.++.|+ +..++||+|||++|.+|++.....+.+++|++||++||.|.+..+..++. .++.
T Consensus 71 lg~~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~ 148 (853)
T 2fsf_A 71 FGMRHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGI 148 (853)
T ss_dssp HSCCCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred cCCCCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 57789999999999999998 99999999999999999986555678999999999999999999888876 6677
Q ss_pred eeCCcccC-----CCCCEEEEcHHHH-HHHHhcCc------cccCccceEEEecccccC-ccc
Q psy6275 130 ITGDVTIN-----PSSSCLIMTTEIL-RNMLYRGS------EITREVGWVIFDEIHYMR-DKE 179 (391)
Q Consensus 130 ~~g~~~~~-----~~~~I~v~Tp~~l-~~~l~~~~------~~l~~~~~lViDE~h~~~-~~~ 179 (391)
+.|+.... ..++|+|+||+++ ++++.... ..++.+.++|+||||.|+ +.+
T Consensus 149 i~GG~~~~~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a 211 (853)
T 2fsf_A 149 NLPGMPAPAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEA 211 (853)
T ss_dssp CCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTT
T ss_pred EeCCCCHHHHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcC
Confidence 78876532 2479999999998 67776442 456899999999999987 543
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=9.5e-26 Score=233.77 Aligned_cols=279 Identities=13% Similarity=0.154 Sum_probs=190.6
Q ss_pred CCCcccccccccCCCCccCCCCCcHHHHHHHHHHh-cCCcEEEEecCCcchHHHHHHHHHHH-Hhc--CCeEEEEcccHH
Q psy6275 36 PDLEYQPLAQSKEKPAREYPFVLDPFQKEAILCIE-NNQSVLVSAHTSAGKTVVAEYAIASS-LKQ--SQRVIYTTPIKA 111 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~~~~~Q~~~i~~i~-~~~~~li~apTGsGKT~~~~~~~~~~-l~~--~~~vlvl~P~~~ 111 (391)
.+|..+++++.+.+.+...+..|++.|+++|+.+. .+++++++||||||||+.....++.. ... +.+++|++|+++
T Consensus 72 ~~f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~ 151 (773)
T 2xau_A 72 NPFTGREFTPKYVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRV 151 (773)
T ss_dssp CTTTCSBCCHHHHHHHHHHTTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHH
T ss_pred CCccccCCCHHHHHHHHHhhcCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHH
Confidence 46888888888888777777559999999998654 56789999999999999432222222 222 668999999999
Q ss_pred HHHHHHHHHHHhcc-cceeeeC-----CcccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccc-cCcccc-chh
Q psy6275 112 LSNQKYREFEEQFK-DVGLITG-----DVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHY-MRDKER-GYV 183 (391)
Q Consensus 112 L~~q~~~~~~~~~~-~v~~~~g-----~~~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~-~~~~~~-~~~ 183 (391)
|+.|++..+....+ .++...| +.......+|+++||+++.+.+... ..+.++++||+||+|. .++... ...
T Consensus 152 La~q~~~~l~~~~~~~v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~lIlDEah~R~ld~d~~~~~ 230 (773)
T 2xau_A 152 AAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMED-HDLSRYSCIILDEAHERTLATDILMGL 230 (773)
T ss_dssp HHHHHHHHHHHHTTCCBTTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHS-TTCTTEEEEEECSGGGCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchhheecceeccccccCCCCCEEEECHHHHHHHHhhC-ccccCCCEEEecCccccccchHHHHHH
Confidence 99999988877664 3333333 1223457889999999999877654 3588999999999996 433211 112
Q ss_pred HHHHHHHhCCCCcEEEEcccCCChHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHH
Q psy6275 184 WEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVA 263 (391)
Q Consensus 184 ~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 263 (391)
+..+.. ..++.++++||||+ +.+.+++|++. ..++...++..++++++...+..+ +..
T Consensus 231 l~~l~~-~~~~~~iIl~SAT~-~~~~l~~~~~~-----~~vi~v~gr~~pv~~~~~~~~~~~---------~~~------ 288 (773)
T 2xau_A 231 LKQVVK-RRPDLKIIIMSATL-DAEKFQRYFND-----APLLAVPGRTYPVELYYTPEFQRD---------YLD------ 288 (773)
T ss_dssp HHHHHH-HCTTCEEEEEESCS-CCHHHHHHTTS-----CCEEECCCCCCCEEEECCSSCCSC---------HHH------
T ss_pred HHHHHH-hCCCceEEEEeccc-cHHHHHHHhcC-----CCcccccCcccceEEEEecCCchh---------HHH------
Confidence 333333 33578999999999 45668887652 233445666777877766443211 000
Q ss_pred HHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhc-----------cC-
Q psy6275 264 MNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAK-----------LN- 331 (391)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~-----------~g- 331 (391)
..+..+.+.+.....+++||||+++++++.+++.|.+ .+
T Consensus 289 -----------------------------~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~ 339 (773)
T 2xau_A 289 -----------------------------SAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPL 339 (773)
T ss_dssp -----------------------------HHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCE
T ss_pred -----------------------------HHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCe
Confidence 1122444444454567999999999999999999974 12
Q ss_pred -------CCChHHHHHHHHHHH-----H-HhhhcchhhccCcchHhHHHHHHhhhhhcc
Q psy6275 332 -------FNETEEVKLVDDVFS-----N-AMDVLSEEDRKLPQIENILPLLRRGIGIHH 377 (391)
Q Consensus 332 -------~~~~~~r~~~~~~~~-----~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h 377 (391)
-...++|..+.+.|. + ..+++++| +++++|||++.
T Consensus 340 ~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT-----------~iae~GidIp~ 387 (773)
T 2xau_A 340 SVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVIST-----------NIAETSLTIDG 387 (773)
T ss_dssp EEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEEC-----------THHHHTCCCTT
T ss_pred EEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeC-----------cHHHhCcCcCC
Confidence 223366666666664 2 55666666 59999999973
|
| >1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A | Back alignment and structure |
|---|
Probab=99.93 E-value=7.8e-26 Score=229.57 Aligned_cols=152 Identities=14% Similarity=0.073 Sum_probs=123.4
Q ss_pred cCCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc----cce
Q psy6275 53 EYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK----DVG 128 (391)
Q Consensus 53 ~~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~----~v~ 128 (391)
.+|+.|+++|..+++.++.|+ +..++||+|||++|.+|++.....+..++|++||++|+.|.++.+..++. .++
T Consensus 107 ~lG~rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~ 184 (922)
T 1nkt_A 107 VLDQRPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVG 184 (922)
T ss_dssp HHSCCCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred HcCCCCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEE
Confidence 368899999999999999988 99999999999999999965444577899999999999999998888766 667
Q ss_pred eeeCCcccC-----CCCCEEEEcHHHH-HHHHhcC------ccccCccceEEEecccccC-ccc---------------c
Q psy6275 129 LITGDVTIN-----PSSSCLIMTTEIL-RNMLYRG------SEITREVGWVIFDEIHYMR-DKE---------------R 180 (391)
Q Consensus 129 ~~~g~~~~~-----~~~~I~v~Tp~~l-~~~l~~~------~~~l~~~~~lViDE~h~~~-~~~---------------~ 180 (391)
++.|+.+.. ..++|+|+||+++ ++++... ...++.+.++|+||||.|+ |.+ +
T Consensus 185 ~i~gg~~~~~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~~~~~~~~ 264 (922)
T 1nkt_A 185 VILATMTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGPADGASNW 264 (922)
T ss_dssp ECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEECCCCHHH
T ss_pred EEeCCCCHHHHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecCCCCcchhH
Confidence 777776532 1479999999998 6766543 3456789999999999987 432 3
Q ss_pred chhHHHHHHHhC---------CCCcEE-----------------EEcccCCC
Q psy6275 181 GYVWEETLILLS---------DNVRFV-----------------FLSATIPN 206 (391)
Q Consensus 181 ~~~~~~i~~~~~---------~~~~~i-----------------~~SAT~~~ 206 (391)
...+..++..++ +..|+. ++|||.+.
T Consensus 265 y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~ 316 (922)
T 1nkt_A 265 YTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSP 316 (922)
T ss_dssp HHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCC
T ss_pred HHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchh
Confidence 345677888887 678888 88999865
|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... | Back alignment and structure |
|---|
Probab=99.92 E-value=3.3e-26 Score=230.28 Aligned_cols=142 Identities=20% Similarity=0.098 Sum_probs=116.2
Q ss_pred CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc-cceeeeCCccc
Q psy6275 58 LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK-DVGLITGDVTI 136 (391)
Q Consensus 58 ~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~-~v~~~~g~~~~ 136 (391)
+.++|.++++.+.++++++++||||||||.++.+++++ .+.+++|++|||+|+.|+++.+.+.++ .++...|+...
T Consensus 218 ~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~---~g~~vLVl~PTReLA~Qia~~l~~~~g~~vg~~vG~~~~ 294 (666)
T 3o8b_A 218 VFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA---QGYKVLVLNPSVAATLGFGAYMSKAHGIDPNIRTGVRTI 294 (666)
T ss_dssp SCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH---TTCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCEE
T ss_pred cHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH---CCCeEEEEcchHHHHHHHHHHHHHHhCCCeeEEECcEec
Confidence 44556555666678899999999999999999988776 467999999999999999999887766 77888888888
Q ss_pred CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCc--EEEEcccCCC
Q psy6275 137 NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVR--FVFLSATIPN 206 (391)
Q Consensus 137 ~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~--~i~~SAT~~~ 206 (391)
....+|+|+||+++ +......+.+++++|+||||++ +.++...+..++..++...+ +++||||+++
T Consensus 295 ~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH~l-~~~~~~~l~~Il~~l~~~~~~llil~SAT~~~ 362 (666)
T 3o8b_A 295 TTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECHST-DSTTILGIGTVLDQAETAGARLVVLATATPPG 362 (666)
T ss_dssp CCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTTCC-SHHHHHHHHHHHHHTTTTTCSEEEEEESSCTT
T ss_pred cCCCCEEEECcHHH---HhCCCcccCcccEEEEccchhc-CccHHHHHHHHHHhhhhcCCceEEEECCCCCc
Confidence 88899999999997 3455556778999999999765 44566667778888876656 7888999976
|
| >3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-24 Score=220.75 Aligned_cols=159 Identities=17% Similarity=0.144 Sum_probs=98.0
Q ss_pred CCCCCcHHHHHHHHHHhc-----CCcEEEEecCCcchHHHHHHHHHHHHh---------cCCeEEEEcccHHHHHHHH-H
Q psy6275 54 YPFVLDPFQKEAILCIEN-----NQSVLVSAHTSAGKTVVAEYAIASSLK---------QSQRVIYTTPIKALSNQKY-R 118 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i~~-----~~~~li~apTGsGKT~~~~~~~~~~l~---------~~~~vlvl~P~~~L~~q~~-~ 118 (391)
.++.|+++|.++++.+.+ ++++++++|||+|||++++..+...+. .+.++||++|+++|+.|+. +
T Consensus 175 ~~~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~ 254 (590)
T 3h1t_A 175 SGYSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDK 254 (590)
T ss_dssp ----CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------
T ss_pred CCCCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHH
Confidence 345799999999998754 467999999999999997766665554 4589999999999999999 7
Q ss_pred HHHHhcccceeeeCCcccCCCCCEEEEcHHHHHHHHhc----CccccCccceEEEecccccCccccchhHHHHHHHhCCC
Q psy6275 119 EFEEQFKDVGLITGDVTINPSSSCLIMTTEILRNMLYR----GSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDN 194 (391)
Q Consensus 119 ~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l~~~l~~----~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~ 194 (391)
.++.+...+..+.++ ......+|+|+||+++...... .......+++||+||||++.... ...+..++..++ .
T Consensus 255 ~~~~~~~~~~~~~~~-~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~~il~~~~-~ 331 (590)
T 3h1t_A 255 TFTPFGDARHKIEGG-KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWREILEYFE-P 331 (590)
T ss_dssp CCTTTCSSEEECCC---CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CHHHHHHST-T
T ss_pred HHHhcchhhhhhhcc-CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHHHHHHhCC-c
Confidence 777665555544433 3455789999999998876532 12234578999999999986532 245566777776 4
Q ss_pred CcEEEEcccCCCh--HHHHHHhc
Q psy6275 195 VRFVFLSATIPNA--SQFAQWVS 215 (391)
Q Consensus 195 ~~~i~~SAT~~~~--~~~~~~l~ 215 (391)
.++++||||+... .....+++
T Consensus 332 ~~~l~lTATP~~~~~~~~~~~f~ 354 (590)
T 3h1t_A 332 AFQIGMTATPLREDNRDTYRYFG 354 (590)
T ss_dssp SEEEEEESSCSCTTTHHHHHHSC
T ss_pred ceEEEeccccccccchhHHHHcC
Confidence 7899999998765 34445443
|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.2e-26 Score=233.30 Aligned_cols=239 Identities=15% Similarity=0.114 Sum_probs=157.7
Q ss_pred CCcHHHH-----HHHHHHh------cCCcEEEEecCCcchHHHHHHHHHHHH-hcCCeEEEEcccHHHHHHHHHHHHHhc
Q psy6275 57 VLDPFQK-----EAILCIE------NNQSVLVSAHTSAGKTVVAEYAIASSL-KQSQRVIYTTPIKALSNQKYREFEEQF 124 (391)
Q Consensus 57 ~~~~~Q~-----~~i~~i~------~~~~~li~apTGsGKT~~~~~~~~~~l-~~~~~vlvl~P~~~L~~q~~~~~~~~~ 124 (391)
.|+++|+ ++|+.++ ++++++++||||||||++|++|+++.+ ..+.+++|++||++|+.|+++.+..+.
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~~~~~lilaPTr~La~Q~~~~l~~~~ 294 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVVAAEMAEALRGLP 294 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSC
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHHhcCC
Confidence 4899999 9998877 899999999999999999999988764 567899999999999999998887542
Q ss_pred ccceeeeCCcc--cCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHh-CCCCcEEEEc
Q psy6275 125 KDVGLITGDVT--INPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILL-SDNVRFVFLS 201 (391)
Q Consensus 125 ~~v~~~~g~~~--~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~-~~~~~~i~~S 201 (391)
+....+... ..+..-+-+.+.+.+...+... ..+.+++++|+||||++ +......+..+...+ +.+.|+++||
T Consensus 295 --i~~~~~~l~~v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvViDEaH~~-~~~~~~~~~~l~~~~~~~~~~vl~~S 370 (673)
T 2wv9_A 295 --VRYLTPAVQREHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFVMDEAHFT-DPASIAARGYIATRVEAGEAAAIFMT 370 (673)
T ss_dssp --CEECCC---CCCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEEEESTTCC-CHHHHHHHHHHHHHHHTTSCEEEEEC
T ss_pred --eeeecccccccCCHHHHHHHHHhhhhHHHHhcc-cccccceEEEEeCCccc-CccHHHHHHHHHHhccccCCcEEEEc
Confidence 222222211 1223345567777766555543 45789999999999998 222222333333333 3679999999
Q ss_pred ccCCChHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhhhccCCCCC
Q psy6275 202 ATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKG 281 (391)
Q Consensus 202 AT~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (391)
||++... .. +... ..++.......+...
T Consensus 371 AT~~~~i--~~----~~~~----------~~~i~~v~~~~~~~~------------------------------------ 398 (673)
T 2wv9_A 371 ATPPGTS--DP----FPDT----------NSPVHDVSSEIPDRA------------------------------------ 398 (673)
T ss_dssp SSCTTCC--CS----SCCC----------SSCEEEEECCCCSSC------------------------------------
T ss_pred CCCChhh--hh----hccc----------CCceEEEeeecCHHH------------------------------------
Confidence 9997541 01 1100 111111111001000
Q ss_pred CCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCCh----HHHHHHHHHHHH-Hhhhcchhh
Q psy6275 282 GRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNET----EEVKLVDDVFSN-AMDVLSEED 356 (391)
Q Consensus 282 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~~----~~r~~~~~~~~~-~~~~l~~~d 356 (391)
...++..+.+ ..+++||||+++++|+.+++.|++.++.+. ++|..+++.|++ ..++|++|+
T Consensus 399 -------------~~~~l~~l~~-~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~eR~~v~~~F~~g~~~VLVaTd 464 (673)
T 2wv9_A 399 -------------WSSGFEWITD-YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRKSYDTEYPKCKNGDWDFVITTD 464 (673)
T ss_dssp -------------CSSCCHHHHS-CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSSSHHHHGGGGGTCCCSEEEECG
T ss_pred -------------HHHHHHHHHh-CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChHHHHHHHHHHHCCCceEEEECc
Confidence 0011122223 356999999999999999999998776543 567777777776 667788775
Q ss_pred ccCcchHhHHHHHHhhhhhc
Q psy6275 357 RKLPQIENILPLLRRGIGIH 376 (391)
Q Consensus 357 ~~~~~~~~~~~~l~~GI~~~ 376 (391)
++++|||++
T Consensus 465 -----------v~e~GIDip 473 (673)
T 2wv9_A 465 -----------ISEMGANFG 473 (673)
T ss_dssp -----------GGGTTCCCC
T ss_pred -----------hhhcceeeC
Confidence 999999997
|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A | Back alignment and structure |
|---|
Probab=99.92 E-value=9.3e-25 Score=212.91 Aligned_cols=225 Identities=14% Similarity=0.138 Sum_probs=149.7
Q ss_pred cCCcEEEEecCCcchHHHHHHHHH-HHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCccc--CCCCCEEEEcH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIA-SSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTI--NPSSSCLIMTT 147 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~-~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~--~~~~~I~v~Tp 147 (391)
++++++++||||||||++|+.|++ ..+..+.+++|++||++|+.|+++.+.. -.+++.+|.... .+...+.+.|.
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt~~La~Q~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~ 78 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASEMYEALRG--EPIRYMTPAVQSERTGNEIVDFMCH 78 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTT--SCEEEC---------CCCSEEEEEH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhCC--CeEEEEecCccccCCCCceEEEEch
Confidence 378999999999999999988888 4556788999999999999999987762 255555554222 23456778899
Q ss_pred HHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHH-hCCCCcEEEEcccCCChHHHHHHhccccCCCeeEee
Q psy6275 148 EILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLIL-LSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVY 226 (391)
Q Consensus 148 ~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~-~~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~ 226 (391)
+.+...+.. ...+.+++++|+||+|++ +..+......+... .+.+.++++||||+++.. .. +...
T Consensus 79 ~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~--~~----~~~~------ 144 (431)
T 2v6i_A 79 STFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTT--EA----FPPS------ 144 (431)
T ss_dssp HHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCC--CS----SCCC------
T ss_pred HHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcch--hh----hcCC------
Confidence 988766665 445789999999999997 32222233333333 256799999999997531 01 1000
Q ss_pred eCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcC
Q psy6275 227 TDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERN 306 (391)
Q Consensus 227 ~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 306 (391)
+ .++.......+.. ....+++.+.+.
T Consensus 145 ---~-~~i~~~~~~~~~~-------------------------------------------------~~~~~~~~l~~~- 170 (431)
T 2v6i_A 145 ---N-SPIIDEETRIPDK-------------------------------------------------AWNSGYEWITEF- 170 (431)
T ss_dssp ---S-SCCEEEECCCCSS-------------------------------------------------CCSSCCHHHHSC-
T ss_pred ---C-CceeeccccCCHH-------------------------------------------------HHHHHHHHHHcC-
Confidence 0 1111110000000 000122233333
Q ss_pred CCcEEEEEcchhhHHHHHHHhhccCCCCh----HHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhc
Q psy6275 307 LAPVIVFSFSKKDCEIYAMQMAKLNFNET----EEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIH 376 (391)
Q Consensus 307 ~~~~iIF~~t~~~~~~la~~L~~~g~~~~----~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~ 376 (391)
.+++||||+++++|+.+++.|++.++... .+|+.+++.|++ ..++|++|+ ++++|||++
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~r~~~~~~f~~g~~~vLVaT~-----------v~e~GiDip 234 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRKTFESEYPKCKSEKWDFVITTD-----------ISEMGANFK 234 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTTTHHHHTTHHHHSCCSEEEECG-----------GGGTSCCCC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCccHHHHHHhhcCCCCeEEEECc-----------hHHcCcccC
Confidence 45899999999999999999998766542 467777777777 668888885 999999997
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=7.3e-25 Score=214.15 Aligned_cols=229 Identities=14% Similarity=0.127 Sum_probs=142.3
Q ss_pred HhcCCcEEEEecCCcchHHHHHHHHHHHH-hcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcc-c-CCCCCEEEE
Q psy6275 69 IENNQSVLVSAHTSAGKTVVAEYAIASSL-KQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVT-I-NPSSSCLIM 145 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~~~~~~~~l-~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~-~-~~~~~I~v~ 145 (391)
+.++++++++||||||||++|++|+++.+ ..+.+++|++||++|+.|+++.++.+. +....+... . .+..-+-..
T Consensus 5 l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~~~~lil~Ptr~La~Q~~~~l~~~~--v~~~~~~~~~v~Tp~~l~~~l 82 (440)
T 1yks_A 5 LKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGLD--VKFHTQAFSAHGSGREVIDAM 82 (440)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSC--EEEESSCCCCCCCSSCCEEEE
T ss_pred hhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhcCCeEEEEcchHHHHHHHHHHHhcCC--eEEecccceeccCCccceeee
Confidence 56799999999999999999999988855 456799999999999999998887542 332222211 1 112223344
Q ss_pred cHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHh-CCCCcEEEEcccCCCh-HHHHHHhccccCCCee
Q psy6275 146 TTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILL-SDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCH 223 (391)
Q Consensus 146 Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~-~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~ 223 (391)
+.+.+...+.. ...+.+++++|+||+|++ +..+...+..+.... +.+.|+++||||++.. ..+.. .
T Consensus 83 ~~~~l~~~~~~-~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~-------~--- 150 (440)
T 1yks_A 83 CHATLTYRMLE-PTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATILMTATPPGTSDEFPH-------S--- 150 (440)
T ss_dssp EHHHHHHHHTS-SSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCC-------C---
T ss_pred cccchhHhhhC-cccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEEEeCCCCchhhhhhh-------c---
Confidence 55554443332 234789999999999998 333333333333333 3679999999999654 21111 0
Q ss_pred EeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHH
Q psy6275 224 VVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIM 303 (391)
Q Consensus 224 v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 303 (391)
..++......++... ...++..+.
T Consensus 151 -------~~~~~~~~~~~~~~~-------------------------------------------------~~~~~~~l~ 174 (440)
T 1yks_A 151 -------NGEIEDVQTDIPSEP-------------------------------------------------WNTGHDWIL 174 (440)
T ss_dssp -------SSCEEEEECCCCSSC-------------------------------------------------CSSSCHHHH
T ss_pred -------CCCeeEeeeccChHH-------------------------------------------------HHHHHHHHH
Confidence 011111111111000 001122223
Q ss_pred HcCCCcEEEEEcchhhHHHHHHHhhccCCCCh----HHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhccC
Q psy6275 304 ERNLAPVIVFSFSKKDCEIYAMQMAKLNFNET----EEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHG 378 (391)
Q Consensus 304 ~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~~----~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~ 378 (391)
+. ++++||||++++.|+.+++.|+..|+.+. ++|..+++.|++ ..++|++|+ ++++|||++ +
T Consensus 175 ~~-~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~R~~~~~~F~~g~~~vLVaT~-----------v~e~GiDip-v 241 (440)
T 1yks_A 175 AD-KRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYPTIKQKKPDFILATD-----------IAEMGANLC-V 241 (440)
T ss_dssp HC-CSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSSSCC--------CCCSEEEESS-----------STTCCTTCC-C
T ss_pred hc-CCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecchhHHHHHhhhcCCCceEEEECC-----------hhheeeccC-c
Confidence 33 46999999999999999999998766542 567777777776 678888885 899999998 5
Q ss_pred CC
Q psy6275 379 VK 380 (391)
Q Consensus 379 ~~ 380 (391)
..
T Consensus 242 ~~ 243 (440)
T 1yks_A 242 ER 243 (440)
T ss_dssp SE
T ss_pred eE
Confidence 43
|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.6e-23 Score=183.35 Aligned_cols=150 Identities=24% Similarity=0.276 Sum_probs=109.7
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc------CCeEEEEcccHHHHHH-HHHHHHHhcc-
Q psy6275 54 YPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ------SQRVIYTTPIKALSNQ-KYREFEEQFK- 125 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~------~~~vlvl~P~~~L~~q-~~~~~~~~~~- 125 (391)
.+++|+++|.++++.+.+++++++.+|||+|||++++.++...+.. +.+++|++|+++|+.| +.+.+..+..
T Consensus 30 ~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~ 109 (216)
T 3b6e_A 30 PELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK 109 (216)
T ss_dssp CCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHTT
T ss_pred CCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhcc
Confidence 3567999999999999999999999999999999999998876643 6799999999999999 7677777764
Q ss_pred --cceeeeCCcccCC-------CCCEEEEcHHHHHHHHhcCc------cccCccceEEEecccccCccc-cchhHHHHHH
Q psy6275 126 --DVGLITGDVTINP-------SSSCLIMTTEILRNMLYRGS------EITREVGWVIFDEIHYMRDKE-RGYVWEETLI 189 (391)
Q Consensus 126 --~v~~~~g~~~~~~-------~~~I~v~Tp~~l~~~l~~~~------~~l~~~~~lViDE~h~~~~~~-~~~~~~~i~~ 189 (391)
.+..++|+..... .++|+|+||+.+...+.... ..+.+++++|+||||++.+.+ +...+..++.
T Consensus 110 ~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~ 189 (216)
T 3b6e_A 110 WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLM 189 (216)
T ss_dssp TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHHHHHH
T ss_pred CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHHHHHH
Confidence 5666777655433 37899999999998887643 456789999999999987543 2222222222
Q ss_pred Hh-------------CCCCcEEEEccc
Q psy6275 190 LL-------------SDNVRFVFLSAT 203 (391)
Q Consensus 190 ~~-------------~~~~~~i~~SAT 203 (391)
.. ....++++||||
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 190 QKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HhcccccccccccCCCCcceEEEeecC
Confidence 11 156899999998
|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A | Back alignment and structure |
|---|
Probab=99.90 E-value=5.2e-25 Score=216.43 Aligned_cols=230 Identities=15% Similarity=0.101 Sum_probs=142.9
Q ss_pred HHHhcCCcEEEEecCCcchHHHHHHHHHHHH-hcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcc--cCCCCCEE
Q psy6275 67 LCIENNQSVLVSAHTSAGKTVVAEYAIASSL-KQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVT--INPSSSCL 143 (391)
Q Consensus 67 ~~i~~~~~~li~apTGsGKT~~~~~~~~~~l-~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~--~~~~~~I~ 143 (391)
..+.++++++++||||||||++|++|++..+ ..+.++||++|+++|+.|+++.+... .+....+... ..+...+.
T Consensus 16 ~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr~La~Q~~~~l~g~--~v~~~~~~~~~~~t~~~~i~ 93 (459)
T 2z83_A 16 NMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALRGL--PVRYQTSAVQREHQGNEIVD 93 (459)
T ss_dssp GGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHHTTTS--CEEECC--------CCCSEE
T ss_pred HHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhcCc--eEeEEecccccCCCCCcEEE
Confidence 3467789999999999999999999988765 46789999999999999999888732 2222222111 12345678
Q ss_pred EEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHH-hCCCCcEEEEcccCCChHHHHHHhccccCCCe
Q psy6275 144 IMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLIL-LSDNVRFVFLSATIPNASQFAQWVSHLHHQPC 222 (391)
Q Consensus 144 v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~-~~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~ 222 (391)
++|.+.+...+... ..+++++++|+||||++.. .....+..+... ...+.|+++||||++... ..+.. ...|+
T Consensus 94 ~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~-~~~~~~~~~~~~~~~~~~~~il~SAT~~~~~--~~~~~--~~~pi 167 (459)
T 2z83_A 94 VMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDP-ASIAARGYIATKVELGEAAAIFMTATPPGTT--DPFPD--SNAPI 167 (459)
T ss_dssp EEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSH-HHHHHHHHHHHHHHTTSCEEEEECSSCTTCC--CSSCC--CSSCE
T ss_pred EEchHHHHHHhhcc-ccccCCcEEEEECCccCCc-hhhHHHHHHHHHhccCCccEEEEEcCCCcch--hhhcc--CCCCe
Confidence 89999887766554 3478999999999998521 111111112221 235799999999997541 11100 01121
Q ss_pred eEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHH
Q psy6275 223 HVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMI 302 (391)
Q Consensus 223 ~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 302 (391)
.... ...+... ...++..+
T Consensus 168 ~~~~------------~~~~~~~-------------------------------------------------~~~~~~~l 186 (459)
T 2z83_A 168 HDLQ------------DEIPDRA-------------------------------------------------WSSGYEWI 186 (459)
T ss_dssp EEEE------------CCCCSSC-------------------------------------------------CSSCCHHH
T ss_pred EEec------------ccCCcch-------------------------------------------------hHHHHHHH
Confidence 1110 0000000 00111222
Q ss_pred HHcCCCcEEEEEcchhhHHHHHHHhhccCCCCh----HHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhcc
Q psy6275 303 MERNLAPVIVFSFSKKDCEIYAMQMAKLNFNET----EEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHH 377 (391)
Q Consensus 303 ~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~~----~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h 377 (391)
.+. .+++||||+|++.|+.+++.|+..|+.+. ++|..+.+.|++ ..++|++| +++++|||++.
T Consensus 187 ~~~-~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~~R~~~~~~f~~g~~~iLVaT-----------~v~~~GiDip~ 254 (459)
T 2z83_A 187 TEY-AGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRKSYDTEYPKCKNGDWDFVITT-----------DISEMGANFGA 254 (459)
T ss_dssp HHC-CSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTTCCCCCGGGSSSCCCSEEEES-----------SCC---CCCSC
T ss_pred Hhc-CCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHHHHHHHHhhccCCCceEEEEC-----------ChHHhCeecCC
Confidence 333 46999999999999999999998876653 344444555544 45666666 59999999985
|
| >1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-22 Score=186.50 Aligned_cols=145 Identities=17% Similarity=0.186 Sum_probs=118.5
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcC-CeEEEEcccHHHHHHHHHHHHHhcc----cceee
Q psy6275 56 FVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQS-QRVIYTTPIKALSNQKYREFEEQFK----DVGLI 130 (391)
Q Consensus 56 ~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~-~~vlvl~P~~~L~~q~~~~~~~~~~----~v~~~ 130 (391)
++|+++|.++++.+.++++.++++|||+|||.+++.++...+..+ +++||++|+++|+.|+.+++.++.. .+..+
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~ 191 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKI 191 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEEC
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhcccccceEEEE
Confidence 479999999999888888889999999999999988887766554 4999999999999999999999865 34445
Q ss_pred eCCcccC----CCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEcccCCC
Q psy6275 131 TGDVTIN----PSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPN 206 (391)
Q Consensus 131 ~g~~~~~----~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 206 (391)
.++.... ...+|+|+||+.+... ....+.+++++|+||||++.+ ..+..++..+....++++||||+++
T Consensus 192 ~~~~~~~~~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~~~~~l~lSATp~~ 264 (282)
T 1rif_A 192 GGGASKDDKYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFKFGLSGSLRD 264 (282)
T ss_dssp STTCSSTTCCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHTTTCTTCCEEEEECSSCCT
T ss_pred eCCCcchhhhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCCc----ccHHHHHHHhhcCCeEEEEeCCCCC
Confidence 5554443 5689999999977432 334567899999999999863 3666777777678999999999987
Q ss_pred h
Q psy6275 207 A 207 (391)
Q Consensus 207 ~ 207 (391)
.
T Consensus 265 ~ 265 (282)
T 1rif_A 265 G 265 (282)
T ss_dssp T
T ss_pred c
Confidence 6
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.9e-22 Score=178.65 Aligned_cols=155 Identities=23% Similarity=0.288 Sum_probs=118.7
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh-c----CCeEEEEcccHHHHHHHHHHHHHhcc-ccee
Q psy6275 56 FVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK-Q----SQRVIYTTPIKALSNQKYREFEEQFK-DVGL 129 (391)
Q Consensus 56 ~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~-~----~~~vlvl~P~~~L~~q~~~~~~~~~~-~v~~ 129 (391)
+.++++|.++++.+.+|+++++.||||||||+++..+++.... . +.++++++|+++++.|+.+.+....+ .++.
T Consensus 60 ~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~ 139 (235)
T 3llm_A 60 LPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGK 139 (235)
T ss_dssp SGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTS
T ss_pred CChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCc
Confidence 4588999999999999999999999999999988888777543 2 34899999999999999999887765 3322
Q ss_pred eeC----Cccc--CCCCCEEEEcHHHHHHHHhcCccccCccceEEEeccccc-Cccccc-hhHHHHHHHhCCCCcEEEEc
Q psy6275 130 ITG----DVTI--NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYM-RDKERG-YVWEETLILLSDNVRFVFLS 201 (391)
Q Consensus 130 ~~g----~~~~--~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~-~~~~~~-~~~~~i~~~~~~~~~~i~~S 201 (391)
..| .... ...++|+|+||+++.+++.. .+++++++|+||||.+ .+.++. ..+..++... ++.|+++||
T Consensus 140 ~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~-~~~~~il~S 215 (235)
T 3llm_A 140 SCGYSVRFESILPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAY-PEVRIVLMS 215 (235)
T ss_dssp SEEEEETTEEECCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHC-TTSEEEEEE
T ss_pred eEEEeechhhccCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhC-CCCeEEEEe
Confidence 222 1111 24578999999999998866 3789999999999985 443333 2334444443 478999999
Q ss_pred ccCCChHHHHHHhc
Q psy6275 202 ATIPNASQFAQWVS 215 (391)
Q Consensus 202 AT~~~~~~~~~~l~ 215 (391)
||++... +++|++
T Consensus 216 AT~~~~~-~~~~~~ 228 (235)
T 3llm_A 216 ATIDTSM-FCEYFF 228 (235)
T ss_dssp CSSCCHH-HHHHTT
T ss_pred cCCCHHH-HHHHcC
Confidence 9997665 888775
|
| >3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.1e-22 Score=204.76 Aligned_cols=221 Identities=19% Similarity=0.252 Sum_probs=158.9
Q ss_pred HHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCC-----CCCE
Q psy6275 68 CIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINP-----SSSC 142 (391)
Q Consensus 68 ~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~-----~~~I 142 (391)
..+++++++++||||||||+.++ ..+....+.+|++|+++|+.|+++++++....+++++|+..... ..++
T Consensus 151 r~l~rk~vlv~apTGSGKT~~al----~~l~~~~~gl~l~PtR~LA~Qi~~~l~~~g~~v~lltG~~~~iv~TpGr~~~i 226 (677)
T 3rc3_A 151 RAMQRKIIFHSGPTNSGKTYHAI----QKYFSAKSGVYCGPLKLLAHEIFEKSNAAGVPCDLVTGEERVTVQPNGKQASH 226 (677)
T ss_dssp HTSCCEEEEEECCTTSSHHHHHH----HHHHHSSSEEEEESSHHHHHHHHHHHHHTTCCEEEECSSCEECCSTTCCCCSE
T ss_pred HhcCCCEEEEEcCCCCCHHHHHH----HHHHhcCCeEEEeCHHHHHHHHHHHHHhcCCcEEEEECCeeEEecCCCcccce
Confidence 44678999999999999998333 33333456799999999999999999998778899999876522 3678
Q ss_pred EEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhC-CCCcEEEEcccCCChHHHHHHhccccCCC
Q psy6275 143 LIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLS-DNVRFVFLSATIPNASQFAQWVSHLHHQP 221 (391)
Q Consensus 143 ~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~-~~~~~i~~SAT~~~~~~~~~~l~~~~~~~ 221 (391)
+++|++.+. ....++++|+||||++.+.+++..+..++..++ ...+++++|||.+....+..+. ...
T Consensus 227 l~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~~i~~l~~~~----~~~ 294 (677)
T 3rc3_A 227 VSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTT----GEE 294 (677)
T ss_dssp EEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGHHHHHHHHHHH----TCC
T ss_pred eEecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchHHHHHHHHHhc----CCc
Confidence 899886432 346789999999999999889999998888877 6789999999964334344432 223
Q ss_pred eeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHH
Q psy6275 222 CHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKM 301 (391)
Q Consensus 222 ~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 301 (391)
+.+ ....+..++....... ..
T Consensus 295 ~~v-~~~~r~~~l~~~~~~l----------------------------------------------------------~~ 315 (677)
T 3rc3_A 295 VEV-RDYKRLTPISVLDHAL----------------------------------------------------------ES 315 (677)
T ss_dssp EEE-EECCCSSCEEECSSCC----------------------------------------------------------CS
T ss_pred eEE-EEeeecchHHHHHHHH----------------------------------------------------------HH
Confidence 332 2223333222110000 00
Q ss_pred HHHcCCCcEEEEEcchhhHHHHHHHhhccCCCC--------hHHHHHHHHHHHH---HhhhcchhhccCcchHhHHHHHH
Q psy6275 302 IMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNE--------TEEVKLVDDVFSN---AMDVLSEEDRKLPQIENILPLLR 370 (391)
Q Consensus 302 l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~--------~~~r~~~~~~~~~---~~~~l~~~d~~~~~~~~~~~~l~ 370 (391)
+... ....||||+|+++++.+++.|.+.++.+ .++|..+.+.|++ ..++|++|+ +++
T Consensus 316 l~~~-~~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATd-----------i~e 383 (677)
T 3rc3_A 316 LDNL-RPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATD-----------AIG 383 (677)
T ss_dssp GGGC-CTTEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECG-----------GGG
T ss_pred HHhc-CCCCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCc-----------HHH
Confidence 0111 2356999999999999999999876554 3678888888884 467888885 899
Q ss_pred hhhhh
Q psy6275 371 RGIGI 375 (391)
Q Consensus 371 ~GI~~ 375 (391)
+|||+
T Consensus 384 ~GlDi 388 (677)
T 3rc3_A 384 MGLNL 388 (677)
T ss_dssp SSCCC
T ss_pred CCcCc
Confidence 99998
|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-21 Score=207.27 Aligned_cols=153 Identities=20% Similarity=0.190 Sum_probs=111.1
Q ss_pred cCCCCCcHHHHHHHHHHhc--CCcEEEEecCCcchHHHHHHHHHHHHhcCC--eEEEEcccHHHHHHHHHHHHHhcc-cc
Q psy6275 53 EYPFVLDPFQKEAILCIEN--NQSVLVSAHTSAGKTVVAEYAIASSLKQSQ--RVIYTTPIKALSNQKYREFEEQFK-DV 127 (391)
Q Consensus 53 ~~~~~~~~~Q~~~i~~i~~--~~~~li~apTGsGKT~~~~~~~~~~l~~~~--~vlvl~P~~~L~~q~~~~~~~~~~-~v 127 (391)
...++|+|+|.+++..+.. +.+++++++||+|||.+++..+...+..+. ++||++|+ +|+.|+...+.+.++ .+
T Consensus 149 ~~~~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~~f~l~v 227 (968)
T 3dmq_A 149 GQRTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLRRFNLRF 227 (968)
T ss_dssp CCSSCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHHHSCCCC
T ss_pred CCCCCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHHHhCCCE
Confidence 3456799999999987765 458999999999999999888877765554 99999999 999999999977776 55
Q ss_pred eeeeCCc---------ccCCCCCEEEEcHHHHHHHHhc-CccccCccceEEEecccccCccccc--hhHHHHHHHhCCCC
Q psy6275 128 GLITGDV---------TINPSSSCLIMTTEILRNMLYR-GSEITREVGWVIFDEIHYMRDKERG--YVWEETLILLSDNV 195 (391)
Q Consensus 128 ~~~~g~~---------~~~~~~~I~v~Tp~~l~~~l~~-~~~~l~~~~~lViDE~h~~~~~~~~--~~~~~i~~~~~~~~ 195 (391)
.+++|+. ......+|+|+|++.+...... .......+++||+||||++...... ..+..+........
T Consensus 228 ~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~~~ 307 (968)
T 3dmq_A 228 ALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVP 307 (968)
T ss_dssp EECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTTCS
T ss_pred EEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhhcCC
Confidence 5555443 1223578999999988532111 1122447999999999999654322 12333333334556
Q ss_pred cEEEEcccCCC
Q psy6275 196 RFVFLSATIPN 206 (391)
Q Consensus 196 ~~i~~SAT~~~ 206 (391)
++++||||+..
T Consensus 308 ~~L~LTATPi~ 318 (968)
T 3dmq_A 308 GVLLLTATPEQ 318 (968)
T ss_dssp SEEESCSSCSS
T ss_pred cEEEEEcCCcc
Confidence 79999999853
|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-19 Score=180.62 Aligned_cols=144 Identities=13% Similarity=0.101 Sum_probs=106.8
Q ss_pred CCCcHHHHHHHHHH----hcCCcEEEEecCCcchHHHHHHHHHHHHhc--CCeEEEEcccHHHHHHHHHHHHHhcc--cc
Q psy6275 56 FVLDPFQKEAILCI----ENNQSVLVSAHTSAGKTVVAEYAIASSLKQ--SQRVIYTTPIKALSNQKYREFEEQFK--DV 127 (391)
Q Consensus 56 ~~~~~~Q~~~i~~i----~~~~~~li~apTGsGKT~~~~~~~~~~l~~--~~~vlvl~P~~~L~~q~~~~~~~~~~--~v 127 (391)
..|+|+|.++++.+ ..+++++++.+||+|||.+++..+...... ..++||++| .+|+.|+.+++.++.. .+
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~qw~~e~~~~~~~~~v 114 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICP-LSVLKNWEEELSKFAPHLRF 114 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEEC-STTHHHHHHHHHHHCTTSCE
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEcc-HHHHHHHHHHHHHHCCCceE
Confidence 46999999999866 457899999999999999976666555433 468999999 5689999999999876 55
Q ss_pred eeeeCCccc--CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEcccCC
Q psy6275 128 GLITGDVTI--NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIP 205 (391)
Q Consensus 128 ~~~~g~~~~--~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 205 (391)
.+++|+... ....+|+|+||+.+..... .....++++|+||||++.+. .......+..++ ..+.+++|||+.
T Consensus 115 ~~~~g~~~~~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~--~~~~~~~l~~l~-~~~~l~LTaTP~ 188 (500)
T 1z63_A 115 AVFHEDRSKIKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNP--QTKIFKAVKELK-SKYRIALTGTPI 188 (500)
T ss_dssp EECSSSTTSCCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCT--TSHHHHHHHTSC-EEEEEEECSSCS
T ss_pred EEEecCchhccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCH--hHHHHHHHHhhc-cCcEEEEecCCC
Confidence 556665432 1357899999998864332 22347899999999998654 223334444453 467899999985
Q ss_pred C
Q psy6275 206 N 206 (391)
Q Consensus 206 ~ 206 (391)
.
T Consensus 189 ~ 189 (500)
T 1z63_A 189 E 189 (500)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* | Back alignment and structure |
|---|
Probab=99.84 E-value=4.9e-20 Score=194.89 Aligned_cols=144 Identities=19% Similarity=0.218 Sum_probs=108.8
Q ss_pred CCcHHHHHHHHHHhc--------------CCcEEEEecCCcchHHHHHHHHHHHHhc---CCeEEEEcccHHHHHHHHHH
Q psy6275 57 VLDPFQKEAILCIEN--------------NQSVLVSAHTSAGKTVVAEYAIASSLKQ---SQRVIYTTPIKALSNQKYRE 119 (391)
Q Consensus 57 ~~~~~Q~~~i~~i~~--------------~~~~li~apTGsGKT~~~~~~~~~~l~~---~~~vlvl~P~~~L~~q~~~~ 119 (391)
.|+++|.+|++.+.. +++.+++++||||||+++ +++...+.. ..++||++|+++|+.|+...
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~ 349 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATELDFIDKVFFVVDRKDLDYQTMKE 349 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTCTTCCEEEEEECGGGCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhcCCCceEEEEeCcHHHHHHHHHH
Confidence 599999999998754 368999999999999997 445555542 36999999999999999999
Q ss_pred HHHhcccceeeeCCcc-------c-CCCCCEEEEcHHHHHHHHhcCc--cccCccceEEEecccccCccccchhHHHHHH
Q psy6275 120 FEEQFKDVGLITGDVT-------I-NPSSSCLIMTTEILRNMLYRGS--EITREVGWVIFDEIHYMRDKERGYVWEETLI 189 (391)
Q Consensus 120 ~~~~~~~v~~~~g~~~-------~-~~~~~I~v~Tp~~l~~~l~~~~--~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~ 189 (391)
+..+.... +.+... . ....+|+|+||+++...+.... ..+....+||+||||++.. +..+..+..
T Consensus 350 f~~f~~~~--v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~---~~~~~~I~~ 424 (1038)
T 2w00_A 350 YQRFSPDS--VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF---GEAQKNLKK 424 (1038)
T ss_dssp HHTTSTTC--SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH---HHHHHHHHH
T ss_pred HHHhcccc--cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc---hHHHHHHHH
Confidence 98876521 112111 1 2467999999999998775432 2355789999999999742 344566666
Q ss_pred HhCCCCcEEEEcccCCCh
Q psy6275 190 LLSDNVRFVFLSATIPNA 207 (391)
Q Consensus 190 ~~~~~~~~i~~SAT~~~~ 207 (391)
.++ +.++++|||||...
T Consensus 425 ~~p-~a~~lgfTATP~~~ 441 (1038)
T 2w00_A 425 KFK-RYYQFGFTGTPIFP 441 (1038)
T ss_dssp HCS-SEEEEEEESSCCCS
T ss_pred hCC-cccEEEEeCCcccc
Confidence 676 48999999999754
|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.84 E-value=3.8e-20 Score=165.80 Aligned_cols=142 Identities=20% Similarity=0.161 Sum_probs=113.0
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhccc-ceeeeC
Q psy6275 54 YPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKD-VGLITG 132 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~-v~~~~g 132 (391)
.+++|+++|.+++..+.+++++++++|||+|||.+++.++... +.+++|++|+++|+.|+.+.+.++... ++.++|
T Consensus 90 ~~~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~---~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g 166 (237)
T 2fz4_A 90 AEISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL---STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSG 166 (237)
T ss_dssp CCCCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS---CSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESS
T ss_pred CCCCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 4567999999999999988899999999999999988777653 789999999999999999999984335 777877
Q ss_pred CcccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEcccCCChH
Q psy6275 133 DVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNAS 208 (391)
Q Consensus 133 ~~~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~ 208 (391)
+.. ...+|+|+|++.+...... ....++++|+||+|.+.+. .+..++..++ ..++++||||+.+.+
T Consensus 167 ~~~--~~~~i~v~T~~~l~~~~~~---~~~~~~llIiDEaH~l~~~----~~~~i~~~~~-~~~~l~LSATp~r~D 232 (237)
T 2fz4_A 167 RIK--ELKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAE----SYVQIAQMSI-APFRLGLTATFERED 232 (237)
T ss_dssp SCB--CCCSEEEEEHHHHHHTHHH---HTTTCSEEEEECSSCCCTT----THHHHHHTCC-CSEEEEEEESCC---
T ss_pred CCC--CcCCEEEEeHHHHHhhHHH---hcccCCEEEEECCccCCCh----HHHHHHHhcc-CCEEEEEecCCCCCC
Confidence 654 4578999999988765432 2246899999999998754 3445555554 578999999997653
|
| >2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.81 E-value=6.6e-19 Score=178.59 Aligned_cols=121 Identities=19% Similarity=0.168 Sum_probs=102.9
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc----ccee
Q psy6275 54 YPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK----DVGL 129 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~----~v~~ 129 (391)
+|+.|+++|..+++.++.|+ +..+.||+|||++|.+|++.....+.+++|++||++||.|.+..+..++. .+++
T Consensus 76 lG~~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~ 153 (997)
T 2ipc_A 76 LGMRHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGV 153 (997)
T ss_dssp TCCCCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEE
T ss_pred hCCCCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 68899999999999999998 99999999999999999965444678999999999999999999988876 6677
Q ss_pred eeCCcccC-----CCCCEEEEcHHHH-HHHHhcCc------cccC---ccceEEEecccccC
Q psy6275 130 ITGDVTIN-----PSSSCLIMTTEIL-RNMLYRGS------EITR---EVGWVIFDEIHYMR 176 (391)
Q Consensus 130 ~~g~~~~~-----~~~~I~v~Tp~~l-~~~l~~~~------~~l~---~~~~lViDE~h~~~ 176 (391)
++|+.... ..++|+|+||+++ ++++..+. ..++ .+.++|+||+|.|+
T Consensus 154 i~Gg~~~~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 154 IQHASTPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp CCTTCCHHHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred EeCCCCHHHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 77776532 2589999999999 77776552 3466 89999999999976
|
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-16 Score=166.81 Aligned_cols=154 Identities=17% Similarity=0.114 Sum_probs=109.9
Q ss_pred CCCCcHHHHHHHHHHh----cCCcEEEEecCCcchHHHHHHHHHHHH---hcCCeEEEEcccHHHHHHHHHHHHHhcc--
Q psy6275 55 PFVLDPFQKEAILCIE----NNQSVLVSAHTSAGKTVVAEYAIASSL---KQSQRVIYTTPIKALSNQKYREFEEQFK-- 125 (391)
Q Consensus 55 ~~~~~~~Q~~~i~~i~----~~~~~li~apTGsGKT~~~~~~~~~~l---~~~~~vlvl~P~~~L~~q~~~~~~~~~~-- 125 (391)
+.+++|+|.+++..+. .+++.+++.+||.|||++++..+...+ ...+.+||++| .+|+.|+..++.+++.
T Consensus 234 ~~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~p~~ 312 (800)
T 3mwy_W 234 GGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWAPDL 312 (800)
T ss_dssp SSCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHSTTC
T ss_pred CCCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHCCCc
Confidence 4579999999998654 788999999999999998766665443 34678999999 7889999999999986
Q ss_pred cceeeeCCcc-------------------cCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHH
Q psy6275 126 DVGLITGDVT-------------------INPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEE 186 (391)
Q Consensus 126 ~v~~~~g~~~-------------------~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~ 186 (391)
.+.+.+|+.. .....+|+|+|++.+......- ....+++||+||||++... ......
T Consensus 313 ~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l--~~~~w~~vIvDEaH~lkn~--~s~~~~ 388 (800)
T 3mwy_W 313 NCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAEL--GSIKWQFMAVDEAHRLKNA--ESSLYE 388 (800)
T ss_dssp CEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHH--HTSEEEEEEETTGGGGCCS--SSHHHH
T ss_pred eEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHHH--hcCCcceeehhhhhhhcCc--hhHHHH
Confidence 4555666543 1235689999999987543211 1226889999999998543 333444
Q ss_pred HHHHhCCCCcEEEEcccCCCh--HHHHHHh
Q psy6275 187 TLILLSDNVRFVFLSATIPNA--SQFAQWV 214 (391)
Q Consensus 187 i~~~~~~~~~~i~~SAT~~~~--~~~~~~l 214 (391)
.+..+. ....+++|||+-.. .++...+
T Consensus 389 ~l~~l~-~~~rl~LTgTPiqN~l~el~~ll 417 (800)
T 3mwy_W 389 SLNSFK-VANRMLITGTPLQNNIKELAALV 417 (800)
T ss_dssp HHTTSE-EEEEEEECSCCCSSCSHHHHHHH
T ss_pred HHHHhh-hccEEEeeCCcCCCCHHHHHHHH
Confidence 444443 35678999998432 4444433
|
| >2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.5e-17 Score=163.72 Aligned_cols=120 Identities=20% Similarity=0.222 Sum_probs=86.6
Q ss_pred CCCCCcHHHHHHHHH----HhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhccccee
Q psy6275 54 YPFVLDPFQKEAILC----IENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGL 129 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~----i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~ 129 (391)
.||+|+++|.+++.. +.+++++++.||||+|||++|++|++.. +.+++|++||++|+.|+.+.+..+.-++..
T Consensus 4 ~~~~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~---~~~~~~~~~t~~l~~q~~~~~~~l~~~~~~ 80 (540)
T 2vl7_A 4 LKLQLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL---KKKVLIFTRTHSQLDSIYKNAKLLGLKTGF 80 (540)
T ss_dssp -----CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH---TCEEEEEESCHHHHHHHHHHHGGGTCCEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC---CCcEEEEcCCHHHHHHHHHHHHhcCCcEEE
Confidence 477899999998754 4678999999999999999999998764 789999999999999999988775333333
Q ss_pred eeCCcc------------------------------------------------------cCCCCCEEEEcHHHHHHHHh
Q psy6275 130 ITGDVT------------------------------------------------------INPSSSCLIMTTEILRNMLY 155 (391)
Q Consensus 130 ~~g~~~------------------------------------------------------~~~~~~I~v~Tp~~l~~~l~ 155 (391)
+.|... ....++|+|+|+..+++...
T Consensus 81 l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~n~~~l~~~~~ 160 (540)
T 2vl7_A 81 LIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAMTYPYLFQKPI 160 (540)
T ss_dssp C---------------------------------------------------------CTTGGGCSEEEEETHHHHSHHH
T ss_pred ecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEEChHHhcCHHH
Confidence 332110 01246899999999886433
Q ss_pred cCc-------cccCccceEEEecccccC
Q psy6275 156 RGS-------EITREVGWVIFDEIHYMR 176 (391)
Q Consensus 156 ~~~-------~~l~~~~~lViDE~h~~~ 176 (391)
... ..+...+++|+||||.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 161 RNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp HHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred HHhhCcccccccCcCCCEEEEEccccHH
Confidence 221 124578899999999984
|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.72 E-value=2.5e-16 Score=160.76 Aligned_cols=145 Identities=26% Similarity=0.257 Sum_probs=103.8
Q ss_pred CCCcHHHHHHHHHHh---------cCCcEEEEecCCcchHHHHHHHHHHHHhcC-------CeEEEEcccHHHHHHHHHH
Q psy6275 56 FVLDPFQKEAILCIE---------NNQSVLVSAHTSAGKTVVAEYAIASSLKQS-------QRVIYTTPIKALSNQKYRE 119 (391)
Q Consensus 56 ~~~~~~Q~~~i~~i~---------~~~~~li~apTGsGKT~~~~~~~~~~l~~~-------~~vlvl~P~~~L~~q~~~~ 119 (391)
..++|+|.+++..+. .+...++..+||.|||+.++..+...+..+ .++||++|+ +|+.|+.++
T Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E 132 (644)
T 1z3i_X 54 KVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNE 132 (644)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHH
Confidence 359999999998763 456789999999999999877776665432 469999996 899999999
Q ss_pred HHHhccc---ceeeeCCccc---------------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccc
Q psy6275 120 FEEQFKD---VGLITGDVTI---------------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERG 181 (391)
Q Consensus 120 ~~~~~~~---v~~~~g~~~~---------------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~ 181 (391)
+.++.+. +..++++... ....+|+|+|++.+...... .....++++|+||||++... .
T Consensus 133 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~--l~~~~~~~vI~DEaH~ikn~--~ 208 (644)
T 1z3i_X 133 VGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEV--LHKGKVGLVICDEGHRLKNS--D 208 (644)
T ss_dssp HHHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTT--TTTSCCCEEEETTGGGCCTT--C
T ss_pred HHHHcCCCeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHHH--hhcCCccEEEEECceecCCh--h
Confidence 9998752 2334443221 12468999999998754322 12247899999999998653 2
Q ss_pred hhHHHHHHHhCCCCcEEEEcccCCC
Q psy6275 182 YVWEETLILLSDNVRFVFLSATIPN 206 (391)
Q Consensus 182 ~~~~~i~~~~~~~~~~i~~SAT~~~ 206 (391)
......+..+. ....+++|||+-.
T Consensus 209 ~~~~~al~~l~-~~~rl~LTgTPiq 232 (644)
T 1z3i_X 209 NQTYLALNSMN-AQRRVLISGTPIQ 232 (644)
T ss_dssp HHHHHHHHHHC-CSEEEEECSSCSG
T ss_pred hHHHHHHHhcc-cCcEEEEecCccc
Confidence 23333444454 3678999999854
|
| >3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-15 Score=151.85 Aligned_cols=120 Identities=16% Similarity=0.097 Sum_probs=90.7
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc----ccee
Q psy6275 54 YPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK----DVGL 129 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~----~v~~ 129 (391)
+|..|+++|.-..-.+..|+ +..+.||.|||+++.+|+.-..-.+..|.|++|++.||.|-++.+..++. .+++
T Consensus 72 lg~r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~G~~vhVvT~ndyLA~rdae~m~~l~~~Lglsvg~ 149 (822)
T 3jux_A 72 LGMRPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALIGKGVHLVTVNDYLARRDALWMGPVYLFLGLRVGV 149 (822)
T ss_dssp TSCCCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred hCCCCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhcCCceEEEeccHHHHHhHHHHHHHHHHHhCCEEEE
Confidence 47789999999988888887 89999999999999999864444678899999999999998888877766 5666
Q ss_pred eeCC--------------------------------------------------cccCC-----CCCEEEEcHHHH-HHH
Q psy6275 130 ITGD--------------------------------------------------VTINP-----SSSCLIMTTEIL-RNM 153 (391)
Q Consensus 130 ~~g~--------------------------------------------------~~~~~-----~~~I~v~Tp~~l-~~~ 153 (391)
+... ..... .++|+++|..-+ .++
T Consensus 150 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY~~DItYgTn~EfgFDY 229 (822)
T 3jux_A 150 INSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAYLCDVTYGTNNEFGFDY 229 (822)
T ss_dssp EETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHHHSSEEEEEHHHHHHHH
T ss_pred EcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHhcCCCEEccCcchhhHh
Confidence 6551 11111 368999998543 344
Q ss_pred HhcC------ccccCccceEEEeccccc
Q psy6275 154 LYRG------SEITREVGWVIFDEIHYM 175 (391)
Q Consensus 154 l~~~------~~~l~~~~~lViDE~h~~ 175 (391)
+..+ ....+.+.+.|+||+|.+
T Consensus 230 LRDnm~~~~~~~vqR~~~~aIVDEvDSi 257 (822)
T 3jux_A 230 LRDNLVLDYNDKVQRGHFYAIVDEADSV 257 (822)
T ss_dssp HHHTSCSSTTSCCCCCCCEEEEETHHHH
T ss_pred HHhhccCCHHHhccCCCCeEEEecccce
Confidence 4422 223467899999999975
|
| >3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* | Back alignment and structure |
|---|
Probab=99.57 E-value=5.2e-15 Score=148.46 Aligned_cols=120 Identities=18% Similarity=0.182 Sum_probs=94.0
Q ss_pred CCCCcHHHHHHHHH----HhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc----c
Q psy6275 55 PFVLDPFQKEAILC----IENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK----D 126 (391)
Q Consensus 55 ~~~~~~~Q~~~i~~----i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~----~ 126 (391)
||+++|.|.+.+.. +..++++++.||||+|||++|++|++. .+.+++|++||++|+.|+.+.+..+.. +
T Consensus 1 ~~~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~---~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~~ 77 (551)
T 3crv_A 1 MVKLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE---VKPKVLFVVRTHNEFYPIYRDLTKIREKRNIT 77 (551)
T ss_dssp CCSCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH---HCSEEEEEESSGGGHHHHHHHHTTCCCSSCCC
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh---CCCeEEEEcCCHHHHHHHHHHHHHHhhhcCcc
Confidence 57899999998764 467899999999999999999999988 478999999999999999998887743 3
Q ss_pred ceeeeCCccc----------------------------------------------------------CCCCCEEEEcHH
Q psy6275 127 VGLITGDVTI----------------------------------------------------------NPSSSCLIMTTE 148 (391)
Q Consensus 127 v~~~~g~~~~----------------------------------------------------------~~~~~I~v~Tp~ 148 (391)
+..+.|.... ...++|+|+|+.
T Consensus 78 ~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~~ 157 (551)
T 3crv_A 78 FSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTYP 157 (551)
T ss_dssp EEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEETH
T ss_pred EEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCch
Confidence 3344442110 125699999999
Q ss_pred HHHHHHhcCcc-ccCccceEEEecccccCc
Q psy6275 149 ILRNMLYRGSE-ITREVGWVIFDEIHYMRD 177 (391)
Q Consensus 149 ~l~~~l~~~~~-~l~~~~~lViDE~h~~~~ 177 (391)
.+++...+... ......++|+||||.+.+
T Consensus 158 ~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 158 YFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp HHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred HhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 99876433322 224678999999999987
|
| >1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=4.8e-13 Score=136.61 Aligned_cols=69 Identities=26% Similarity=0.220 Sum_probs=55.2
Q ss_pred CCCCCcHHHHHHHHHHh----cCC-cEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy6275 54 YPFVLDPFQKEAILCIE----NNQ-SVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK 125 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i~----~~~-~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~ 125 (391)
.+|+|++.|.+++..+. .+. ..++.|.||||||+++...+.+. +..+||++|+..++.|++..++.+++
T Consensus 5 ~~~~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a~~~~~~---~~~~lvv~~~~~~A~ql~~el~~~~~ 78 (664)
T 1c4o_A 5 RGPSPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVIEAL---GRPALVLAPNKILAAQLAAEFRELFP 78 (664)
T ss_dssp CSCCCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH---TCCEEEEESSHHHHHHHHHHHHHHCT
T ss_pred CCCCCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEecCHHHHHHHHHHHHHHCC
Confidence 36789999999998653 343 46789999999999865444332 45699999999999999999999975
|
| >2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* | Back alignment and structure |
|---|
Probab=99.26 E-value=8.5e-11 Score=119.97 Aligned_cols=69 Identities=23% Similarity=0.244 Sum_probs=54.4
Q ss_pred CCCCCcHHHHHHHHHHh----cCC-cEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy6275 54 YPFVLDPFQKEAILCIE----NNQ-SVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK 125 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i~----~~~-~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~ 125 (391)
-.|+|+..|.+++..+. .+. ...+.|-||||||++....+.+. +..+||++|+..++.|++..++.+++
T Consensus 9 ~~~~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~~~~~~---~~~~lvv~~~~~~A~~l~~el~~~~~ 82 (661)
T 2d7d_A 9 SKYQPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLIKEV---NKPTLVIAHNKTLAGQLYSEFKEFFP 82 (661)
T ss_dssp CSCCCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH---CCCEEEECSSHHHHHHHHHHHHHHCT
T ss_pred cCCCCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHHHHHHh---CCCEEEEECCHHHHHHHHHHHHHHcC
Confidence 35689999999988553 343 47789999999999865443322 45699999999999999999999975
|
| >1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* | Back alignment and structure |
|---|
Probab=98.98 E-value=2.2e-09 Score=108.57 Aligned_cols=139 Identities=15% Similarity=0.157 Sum_probs=87.5
Q ss_pred cHHHHHHHHHHhcCCcEEEEecCCcchHHH--HHHHHHHHH--hcCCeEEEEcccHHHHHHHHHHHHHhcccceeee---
Q psy6275 59 DPFQKEAILCIENNQSVLVSAHTSAGKTVV--AEYAIASSL--KQSQRVIYTTPIKALSNQKYREFEEQFKDVGLIT--- 131 (391)
Q Consensus 59 ~~~Q~~~i~~i~~~~~~li~apTGsGKT~~--~~~~~~~~l--~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~--- 131 (391)
++.|+++++.+..++.+++.|++|+|||++ ++++.+..+ ..+.++++++||..++.++.+.+.......++..
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~~~~~ 230 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQK 230 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCCSCCC
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHhcCCCCHHHH
Confidence 689999999999999999999999999954 455555544 3456999999999999999887765543221100
Q ss_pred CCcc--cCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEccc
Q psy6275 132 GDVT--INPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSAT 203 (391)
Q Consensus 132 g~~~--~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 203 (391)
.... ...-..++-.+|+.. . +.......-.++++|+|||+.+ + ...+..++..++.+.|++++.=.
T Consensus 231 ~~~~~~~~Tih~ll~~~~~~~-~-~~~~~~~~l~~d~lIIDEAsml-~---~~~~~~Ll~~l~~~~~liLvGD~ 298 (608)
T 1w36_D 231 KRIPEDASTLHRLLGAQPGSQ-R-LRHHAGNPLHLDVLVVDEASMI-D---LPMMSRLIDALPDHARVIFLGDR 298 (608)
T ss_dssp CSCSCCCBTTTSCC-------------CTTSCCSCSEEEECSGGGC-B---HHHHHHHHHTCCTTCEEEEEECT
T ss_pred hccchhhhhhHhhhccCCCch-H-HHhccCCCCCCCEEEEechhhC-C---HHHHHHHHHhCCCCCEEEEEcch
Confidence 0000 000012222233321 1 1111112237899999999954 3 34567788888888898887543
|
| >4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1e-08 Score=103.83 Aligned_cols=69 Identities=20% Similarity=0.263 Sum_probs=58.9
Q ss_pred CCCcHHHHHHHHH----HhcCCcEEEEecCCcchHHHHHHHHHHHHh-cCCeEEEEcccHHHHHHHHHHHHHhc
Q psy6275 56 FVLDPFQKEAILC----IENNQSVLVSAHTSAGKTVVAEYAIASSLK-QSQRVIYTTPIKALSNQKYREFEEQF 124 (391)
Q Consensus 56 ~~~~~~Q~~~i~~----i~~~~~~li~apTGsGKT~~~~~~~~~~l~-~~~~vlvl~P~~~L~~q~~~~~~~~~ 124 (391)
|+|++.|.+.+.. +.+++++++.||||+|||++|++|++..+. .+.+++|++||++|+.|+.+.+..+.
T Consensus 2 ~~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~~~kvli~t~T~~l~~Qi~~el~~l~ 75 (620)
T 4a15_A 2 YENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSERKLKVLYLVRTNSQEEQVIKELRSLS 75 (620)
T ss_dssp ---CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHHHHh
Confidence 5799999999864 467999999999999999999999988764 47899999999999999999988764
|
| >3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=1.2e-07 Score=95.10 Aligned_cols=127 Identities=12% Similarity=0.078 Sum_probs=86.5
Q ss_pred CccCCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceee
Q psy6275 51 AREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLI 130 (391)
Q Consensus 51 ~~~~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~ 130 (391)
+...++.+++.|.+++..+..++.+++.||+|+|||++....+......+.++++++||...+..+.+.....
T Consensus 183 l~~~~~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~------- 255 (574)
T 3e1s_A 183 PKKARKGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRT------- 255 (574)
T ss_dssp CTTTTTTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSC-------
T ss_pred HHhhcCCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhccc-------
Confidence 3344778999999999999989999999999999998765444444456889999999999988776543211
Q ss_pred eCCcccCCCCCEEEEcHHHHHHH----HhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEc
Q psy6275 131 TGDVTINPSSSCLIMTTEILRNM----LYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLS 201 (391)
Q Consensus 131 ~g~~~~~~~~~I~v~Tp~~l~~~----l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 201 (391)
..|-.+++.. +..........+++|+||++.+. ...+..++..++...+++++.
T Consensus 256 -------------a~Tih~ll~~~~~~~~~~~~~~~~~dvlIIDEasml~----~~~~~~Ll~~~~~~~~lilvG 313 (574)
T 3e1s_A 256 -------------ASTVHRLLGYGPQGFRHNHLEPAPYDLLIVDEVSMMG----DALMLSLLAAVPPGARVLLVG 313 (574)
T ss_dssp -------------EEEHHHHTTEETTEESCSSSSCCSCSEEEECCGGGCC----HHHHHHHHTTSCTTCEEEEEE
T ss_pred -------------HHHHHHHHcCCcchhhhhhcccccCCEEEEcCccCCC----HHHHHHHHHhCcCCCEEEEEe
Confidence 1111111110 11111223368999999999764 335666777777667777653
|
| >4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A | Back alignment and structure |
|---|
Probab=98.57 E-value=1.5e-07 Score=96.02 Aligned_cols=69 Identities=22% Similarity=0.258 Sum_probs=60.5
Q ss_pred CCcHHHHHHHHHHhcCC-cEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy6275 57 VLDPFQKEAILCIENNQ-SVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK 125 (391)
Q Consensus 57 ~~~~~Q~~~i~~i~~~~-~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~ 125 (391)
.+++-|.+|+..++..+ -.+|.||+|+|||.+....+.+.+.++.++|+++||..-++++.+++.....
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL~~~~~ 258 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQ 258 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHHHhcCC
Confidence 48999999999876544 6799999999999998888888888999999999999999999998876543
|
| >3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=98.52 E-value=6.4e-07 Score=87.54 Aligned_cols=134 Identities=13% Similarity=0.128 Sum_probs=80.0
Q ss_pred CCCC-CcHHHHHHHHHHhc-----CCcEEEEecCCcchHHHHHHHHHHHHhcCC-eEEEEcccHHHHHHHHHHHHHhccc
Q psy6275 54 YPFV-LDPFQKEAILCIEN-----NQSVLVSAHTSAGKTVVAEYAIASSLKQSQ-RVIYTTPIKALSNQKYREFEEQFKD 126 (391)
Q Consensus 54 ~~~~-~~~~Q~~~i~~i~~-----~~~~li~apTGsGKT~~~~~~~~~~l~~~~-~vlvl~P~~~L~~q~~~~~~~~~~~ 126 (391)
..|. +++-|.+++..+.. ...+++.|+.|+|||.+....+......+. ++++++||...+..+...+......
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~~~~~~T 100 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLSGKEAST 100 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHHSSCEEE
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhhccchhh
Confidence 4565 99999999986632 248999999999999876544444444554 7999999999888776554211111
Q ss_pred ceeeeCCc-ccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEc
Q psy6275 127 VGLITGDV-TINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLS 201 (391)
Q Consensus 127 v~~~~g~~-~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 201 (391)
+.-+.+-. ........+.. .....+..++++|+||++.+. ...+..++..++...+++++.
T Consensus 101 ~h~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~iiiDE~~~~~----~~~~~~l~~~~~~~~~~~~vG 162 (459)
T 3upu_A 101 IHSILKINPVTYEENVLFEQ----------KEVPDLAKCRVLICDEVSMYD----RKLFKILLSTIPPWCTIIGIG 162 (459)
T ss_dssp HHHHHTEEEEECSSCEEEEE----------CSCCCCSSCSEEEESCGGGCC----HHHHHHHHHHSCTTCEEEEEE
T ss_pred HHHHhccCcccccccchhcc----------cccccccCCCEEEEECchhCC----HHHHHHHHHhccCCCEEEEEC
Confidence 10000000 00000001100 112345578999999999763 335566666666556665553
|
| >2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A | Back alignment and structure |
|---|
Probab=98.46 E-value=4.1e-06 Score=84.92 Aligned_cols=67 Identities=16% Similarity=0.166 Sum_probs=57.4
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh-cCCeEEEEcccHHHHHHHHHHHHHh
Q psy6275 57 VLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK-QSQRVIYTTPIKALSNQKYREFEEQ 123 (391)
Q Consensus 57 ~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~-~~~~vlvl~P~~~L~~q~~~~~~~~ 123 (391)
.+++.|.+|+..+..+...++.||+|+|||.+....+...+. .+.++++++||...++++...+.+.
T Consensus 180 ~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 180 DLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp CCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 489999999998888888999999999999987665555554 5789999999999999999888764
|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.44 E-value=2.1e-07 Score=77.59 Aligned_cols=75 Identities=20% Similarity=0.267 Sum_probs=59.6
Q ss_pred ccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCC--------hHHHHHHHHHHHH-HhhhcchhhccCcchH
Q psy6275 293 TNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNE--------TEEVKLVDDVFSN-AMDVLSEEDRKLPQIE 363 (391)
Q Consensus 293 ~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~--------~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~ 363 (391)
++...|.+.+.....+++||||+++..++.++..|...|+.+ ..+|..+.+.|++ ...+|++|+
T Consensus 21 ~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~------- 93 (163)
T 2hjv_A 21 NKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD------- 93 (163)
T ss_dssp GHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-------
T ss_pred HHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-------
Confidence 345567777777677799999999999999999999876554 3678888888877 557777774
Q ss_pred hHHHHHHhhhhhccC
Q psy6275 364 NILPLLRRGIGIHHG 378 (391)
Q Consensus 364 ~~~~~l~~GI~~~h~ 378 (391)
++++|+|++.+
T Consensus 94 ----~~~~Gld~~~~ 104 (163)
T 2hjv_A 94 ----VAARGIDIENI 104 (163)
T ss_dssp ----GGTTTCCCSCC
T ss_pred ----hhhcCCchhcC
Confidence 89999999753
|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=98.40 E-value=2.3e-07 Score=78.11 Aligned_cols=75 Identities=21% Similarity=0.308 Sum_probs=60.2
Q ss_pred ccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCC--------hHHHHHHHHHHHH-HhhhcchhhccCcchH
Q psy6275 293 TNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNE--------TEEVKLVDDVFSN-AMDVLSEEDRKLPQIE 363 (391)
Q Consensus 293 ~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~--------~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~ 363 (391)
++...+.+++...+.+++||||+++..|+.++..|...|+.+ ..+|..+.+.|++ ...+|++|+
T Consensus 17 ~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~------- 89 (172)
T 1t5i_A 17 EKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN------- 89 (172)
T ss_dssp GHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS-------
T ss_pred HHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC-------
Confidence 345567777777777899999999999999999998876554 4678888888887 567788775
Q ss_pred hHHHHHHhhhhhccC
Q psy6275 364 NILPLLRRGIGIHHG 378 (391)
Q Consensus 364 ~~~~~l~~GI~~~h~ 378 (391)
++++|+|++.+
T Consensus 90 ----~~~~Gldi~~~ 100 (172)
T 1t5i_A 90 ----LFGRGMDIERV 100 (172)
T ss_dssp ----CCSTTCCGGGC
T ss_pred ----chhcCcchhhC
Confidence 89999999753
|
| >2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.37 E-value=7.2e-06 Score=85.22 Aligned_cols=68 Identities=16% Similarity=0.208 Sum_probs=57.8
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh-cCCeEEEEcccHHHHHHHHHHHHHhc
Q psy6275 57 VLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK-QSQRVIYTTPIKALSNQKYREFEEQF 124 (391)
Q Consensus 57 ~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~-~~~~vlvl~P~~~L~~q~~~~~~~~~ 124 (391)
.+++.|.+|+..+..+...+|.||+|+|||.+....+...+. .+.++++++||...++++.+++.+..
T Consensus 360 ~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~~g 428 (802)
T 2xzl_A 360 QLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRDLG 428 (802)
T ss_dssp CCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHhhC
Confidence 389999999999888778999999999999987655554444 57899999999999999999988753
|
| >2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A | Back alignment and structure |
|---|
Probab=98.35 E-value=7.3e-06 Score=85.05 Aligned_cols=68 Identities=16% Similarity=0.138 Sum_probs=57.4
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh-cCCeEEEEcccHHHHHHHHHHHHHhc
Q psy6275 57 VLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK-QSQRVIYTTPIKALSNQKYREFEEQF 124 (391)
Q Consensus 57 ~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~-~~~~vlvl~P~~~L~~q~~~~~~~~~ 124 (391)
.+++.|.+|+..+..+...++.||+|+|||.+....+...+. .+.++++++||...++++.+.+....
T Consensus 356 ~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~g 424 (800)
T 2wjy_A 356 DLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTG 424 (800)
T ss_dssp CCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHHhC
Confidence 489999999998888888999999999999986655555544 57899999999999999998887643
|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=98.30 E-value=6e-07 Score=74.91 Aligned_cols=74 Identities=16% Similarity=0.298 Sum_probs=59.0
Q ss_pred cHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCC--------hHHHHHHHHHHHH-HhhhcchhhccCcchHh
Q psy6275 294 NCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNE--------TEEVKLVDDVFSN-AMDVLSEEDRKLPQIEN 364 (391)
Q Consensus 294 ~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~--------~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~ 364 (391)
+...+.+.+...+.+++||||++++.|+.++..|...|+.+ ..+|..+.+.|++ ...+|++|+
T Consensus 17 K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-------- 88 (165)
T 1fuk_A 17 KYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-------- 88 (165)
T ss_dssp HHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG--------
T ss_pred HHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC--------
Confidence 44566677777677899999999999999999999876543 3678888888887 567777775
Q ss_pred HHHHHHhhhhhccC
Q psy6275 365 ILPLLRRGIGIHHG 378 (391)
Q Consensus 365 ~~~~l~~GI~~~h~ 378 (391)
++++|+|++++
T Consensus 89 ---~~~~G~d~~~~ 99 (165)
T 1fuk_A 89 ---LLARGIDVQQV 99 (165)
T ss_dssp ---GGTTTCCCCSC
T ss_pred ---hhhcCCCcccC
Confidence 89999999743
|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.29 E-value=7.9e-07 Score=76.16 Aligned_cols=74 Identities=16% Similarity=0.242 Sum_probs=57.7
Q ss_pred cHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCC--------hHHHHHHHHHHHH-HhhhcchhhccCcchHh
Q psy6275 294 NCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNE--------TEEVKLVDDVFSN-AMDVLSEEDRKLPQIEN 364 (391)
Q Consensus 294 ~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~--------~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~ 364 (391)
+...|.+.+...+ .++||||+++..++.++..|...|+.+ ..+|..+.+.|++ ...+|++|
T Consensus 42 K~~~L~~~l~~~~-~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT--------- 111 (191)
T 2p6n_A 42 KMVYLLECLQKTP-PPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT--------- 111 (191)
T ss_dssp HHHHHHHHHTTSC-SCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC---------
T ss_pred HHHHHHHHHHhCC-CCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc---------
Confidence 4556666666554 589999999999999999998776553 4678888888887 56777777
Q ss_pred HHHHHHhhhhhccCC
Q psy6275 365 ILPLLRRGIGIHHGV 379 (391)
Q Consensus 365 ~~~~l~~GI~~~h~~ 379 (391)
+++++|+|++.++
T Consensus 112 --~~~~~Gldi~~v~ 124 (191)
T 2p6n_A 112 --DVASKGLDFPAIQ 124 (191)
T ss_dssp --HHHHTTCCCCCCS
T ss_pred --CchhcCCCcccCC
Confidence 5999999997543
|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.26 E-value=3.9e-07 Score=76.88 Aligned_cols=73 Identities=14% Similarity=0.271 Sum_probs=58.4
Q ss_pred cHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCC--------hHHHHHHHHHHHH-HhhhcchhhccCcchHh
Q psy6275 294 NCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNE--------TEEVKLVDDVFSN-AMDVLSEEDRKLPQIEN 364 (391)
Q Consensus 294 ~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~--------~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~ 364 (391)
+...+.+.+...+.+++||||+++..|+.++..|...|+.+ ..+|..+.+.|++ ...+|++|+
T Consensus 21 K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-------- 92 (175)
T 2rb4_A 21 KYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-------- 92 (175)
T ss_dssp HHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC--------
T ss_pred HHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec--------
Confidence 34566666666667799999999999999999999876543 4778888888887 567788775
Q ss_pred HHHHHHhhhhhcc
Q psy6275 365 ILPLLRRGIGIHH 377 (391)
Q Consensus 365 ~~~~l~~GI~~~h 377 (391)
++++|+|++.
T Consensus 93 ---~~~~Gid~~~ 102 (175)
T 2rb4_A 93 ---VCARGIDVKQ 102 (175)
T ss_dssp ---SCCTTTCCTT
T ss_pred ---chhcCCCccc
Confidence 8999999974
|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.24 E-value=1.1e-06 Score=74.75 Aligned_cols=74 Identities=12% Similarity=0.139 Sum_probs=50.0
Q ss_pred cHHHHHHHHHHc-CCCcEEEEEcchhhHHHHHHHhhccCCCC--------hHHHHHHHHHHHH-HhhhcchhhccCcchH
Q psy6275 294 NCFKIVKMIMER-NLAPVIVFSFSKKDCEIYAMQMAKLNFNE--------TEEVKLVDDVFSN-AMDVLSEEDRKLPQIE 363 (391)
Q Consensus 294 ~~~~l~~~l~~~-~~~~~iIF~~t~~~~~~la~~L~~~g~~~--------~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~ 363 (391)
+...|.+.+... +..++||||++++.|+.++..|...|+.+ ..+|..+.+.|++ ...+|++|+
T Consensus 32 K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~------- 104 (185)
T 2jgn_A 32 KRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATA------- 104 (185)
T ss_dssp HHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSSEEEEEC-------
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC-------
Confidence 345666666665 46799999999999999999999877654 3567777788877 667788775
Q ss_pred hHHHHHHhhhhhccC
Q psy6275 364 NILPLLRRGIGIHHG 378 (391)
Q Consensus 364 ~~~~~l~~GI~~~h~ 378 (391)
++++|+|++.+
T Consensus 105 ----~~~~Gldi~~~ 115 (185)
T 2jgn_A 105 ----VAARGLDISNV 115 (185)
T ss_dssp ----------CCCSB
T ss_pred ----hhhcCCCcccC
Confidence 99999999754
|
| >3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=8.7e-05 Score=75.50 Aligned_cols=67 Identities=21% Similarity=0.179 Sum_probs=56.1
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcC----CeEEEEcccHHHHHHHHHHHHHhcc
Q psy6275 57 VLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQS----QRVIYTTPIKALSNQKYREFEEQFK 125 (391)
Q Consensus 57 ~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~----~~vlvl~P~~~L~~q~~~~~~~~~~ 125 (391)
.+++-|.+++. ..+..++|.|+.|||||.+...-+...+..+ .++|++++|+..+.++.+++....+
T Consensus 9 ~Ln~~Q~~av~--~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~ 79 (647)
T 3lfu_A 9 SLNDKQREAVA--APRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMG 79 (647)
T ss_dssp TCCHHHHHHHT--CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHh--CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhc
Confidence 48999999997 3467899999999999998776666666542 5899999999999999999988743
|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A | Back alignment and structure |
|---|
Probab=98.17 E-value=1.4e-06 Score=75.93 Aligned_cols=74 Identities=20% Similarity=0.264 Sum_probs=60.7
Q ss_pred ccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCC--------hHHHHHHHHHHHH-HhhhcchhhccCcchH
Q psy6275 293 TNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNE--------TEEVKLVDDVFSN-AMDVLSEEDRKLPQIE 363 (391)
Q Consensus 293 ~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~--------~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~ 363 (391)
.++..+.+.+....++++||||+++..++.++..|.+.|+.+ ..+|..+.+.|++ ..++|++|+
T Consensus 17 ~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~------- 89 (212)
T 3eaq_A 17 GRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD------- 89 (212)
T ss_dssp SHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT-------
T ss_pred HHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC-------
Confidence 456677777777777899999999999999999998876554 4778888888887 567888885
Q ss_pred hHHHHHHhhhhhcc
Q psy6275 364 NILPLLRRGIGIHH 377 (391)
Q Consensus 364 ~~~~~l~~GI~~~h 377 (391)
++++|||++.
T Consensus 90 ----~~~~Gidi~~ 99 (212)
T 3eaq_A 90 ----VAARGLDIPQ 99 (212)
T ss_dssp ----TTTCSSSCCC
T ss_pred ----hhhcCCCCcc
Confidence 8999999974
|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.11 E-value=3.3e-06 Score=77.47 Aligned_cols=75 Identities=20% Similarity=0.251 Sum_probs=61.1
Q ss_pred ccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCC--------hHHHHHHHHHHHH-HhhhcchhhccCcchH
Q psy6275 293 TNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNE--------TEEVKLVDDVFSN-AMDVLSEEDRKLPQIE 363 (391)
Q Consensus 293 ~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~--------~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~ 363 (391)
+++..+.+.+.....+++||||++++.++.++..|...|+.+ ..+|..+.+.|++ ..++|++|+
T Consensus 14 ~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~------- 86 (300)
T 3i32_A 14 GRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD------- 86 (300)
T ss_dssp SHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS-------
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec-------
Confidence 455677777777667899999999999999999998876654 3678888888887 668888885
Q ss_pred hHHHHHHhhhhhccC
Q psy6275 364 NILPLLRRGIGIHHG 378 (391)
Q Consensus 364 ~~~~~l~~GI~~~h~ 378 (391)
++++|||++..
T Consensus 87 ----va~~Gidi~~v 97 (300)
T 3i32_A 87 ----VAARGLDIPQV 97 (300)
T ss_dssp ----TTTCSTTCCCC
T ss_pred ----hhhcCccccce
Confidence 89999999753
|
| >2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.30 E-value=6e-07 Score=75.33 Aligned_cols=73 Identities=16% Similarity=0.194 Sum_probs=54.1
Q ss_pred HHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCCh--------HHHHHHHHHHHH-HhhhcchhhccCcchHhH
Q psy6275 295 CFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNET--------EEVKLVDDVFSN-AMDVLSEEDRKLPQIENI 365 (391)
Q Consensus 295 ~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~~--------~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~ 365 (391)
...+.+++...+.+++||||+++..|+.++..|...|+.+. .+|..+.+.|++ ...+|++|
T Consensus 18 ~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT---------- 87 (170)
T 2yjt_D 18 TALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT---------- 87 (170)
Confidence 33555555555567999999999999999999988766543 556667777766 44555555
Q ss_pred HHHHHhhhhhccC
Q psy6275 366 LPLLRRGIGIHHG 378 (391)
Q Consensus 366 ~~~l~~GI~~~h~ 378 (391)
+++++|+|++.+
T Consensus 88 -~~~~~Gid~~~~ 99 (170)
T 2yjt_D 88 -DVAARGIDIPDV 99 (170)
Confidence 699999999754
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=5.5e-05 Score=63.66 Aligned_cols=118 Identities=13% Similarity=0.101 Sum_probs=64.2
Q ss_pred cHHHHHHHHHHh---------cCCcEEEEecCCcchHHHHHHHHHHHH-hcCCeEEEEcccHHHHHHHHHHHHHhcccce
Q psy6275 59 DPFQKEAILCIE---------NNQSVLVSAHTSAGKTVVAEYAIASSL-KQSQRVIYTTPIKALSNQKYREFEEQFKDVG 128 (391)
Q Consensus 59 ~~~Q~~~i~~i~---------~~~~~li~apTGsGKT~~~~~~~~~~l-~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~ 128 (391)
.+.|.+++..+. .++.+++.||+|+|||..+...+-... ..+..++++ +..++...+...+....
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~---- 90 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFF-DTKDLIFRLKHLMDEGK---- 90 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEE-EHHHHHHHHHHHHHHTC----
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEE-EHHHHHHHHHHHhcCch----
Confidence 567888877542 468899999999999987644433332 334455444 44555555443332210
Q ss_pred eeeCCcccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccC-ccccchhHHHHHHHh-CCCCcEEEEcccCCC
Q psy6275 129 LITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMR-DKERGYVWEETLILL-SDNVRFVFLSATIPN 206 (391)
Q Consensus 129 ~~~g~~~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~-~~~~~~~~~~i~~~~-~~~~~~i~~SAT~~~ 206 (391)
.. .+...+ .+.+++|+||++... +......+..++... ..+..+|+.|-..+.
T Consensus 91 -----------~~-------~~~~~~-------~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 91 -----------DT-------KFLKTV-------LNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp -----------CS-------HHHHHH-------HTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSC
T ss_pred -----------HH-------HHHHHh-------cCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChh
Confidence 00 122222 267899999998532 221122333344333 244556555555444
|
| >2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00028 Score=66.63 Aligned_cols=127 Identities=11% Similarity=0.191 Sum_probs=80.0
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHH-HH-hcCCeEEEEcccHHHHHHHHHHHHHhcccce---
Q psy6275 54 YPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIAS-SL-KQSQRVIYTTPIKALSNQKYREFEEQFKDVG--- 128 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~-~l-~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~--- 128 (391)
.+|.++|+|...+..+...+.+++..+-+.|||.+....++. .+ ..+..+++++|++..+..++..+..+.....
T Consensus 160 ~p~~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P~ll 239 (385)
T 2o0j_A 160 IKVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLPDFL 239 (385)
T ss_dssp EECCCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHHHHHHSCTTT
T ss_pred CCCCCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHHHHhChHhh
Confidence 457899999999987755677899999999999976554444 23 3456899999999999888877776654111
Q ss_pred ---e-eeCC--cccCCCCCEEEE--cHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHh
Q psy6275 129 ---L-ITGD--VTINPSSSCLIM--TTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILL 191 (391)
Q Consensus 129 ---~-~~g~--~~~~~~~~I~v~--Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~ 191 (391)
. .... ........|.+. +|+.+. + ...+++|+||+|.+.+. ...+..+...+
T Consensus 240 ~~~~~~~~~~~I~f~nGs~i~~lsa~~~slr-----G----~~~~~viiDE~a~~~~~--~el~~al~~~l 299 (385)
T 2o0j_A 240 QPGIVEWNKGSIELDNGSSIGAYASSPDAVR-----G----NSFAMIYIEDCAFIPNF--HDSWLAIQPVI 299 (385)
T ss_dssp SCCEEEECSSEEEETTSCEEEEEECSHHHHH-----T----SCCSEEEEESGGGSTTH--HHHHHHHHHHH
T ss_pred hhhhccCCccEEEeCCCCEEEEEECCCCCcc-----C----CCCCEEEechhhhcCCC--HHHHHHHHHHh
Confidence 0 0010 111112333332 243331 1 15789999999987531 23444444333
|
| >3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00084 Score=67.52 Aligned_cols=140 Identities=11% Similarity=0.158 Sum_probs=86.4
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHH-HHh-cCCeEEEEcccHHHHHHHHHHHHHhccccee--
Q psy6275 54 YPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIAS-SLK-QSQRVIYTTPIKALSNQKYREFEEQFKDVGL-- 129 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~-~l~-~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~-- 129 (391)
.++.++++|...+..+...+..++.++-|+|||.+....++. .+. .+.++++++|++..+.+++..++........
T Consensus 160 ~~~~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~~i~~~p~~~ 239 (592)
T 3cpe_A 160 IKVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLPDFL 239 (592)
T ss_dssp BBCCCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHHTTSCTTT
T ss_pred ccCcCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHHHHhChHhh
Confidence 457899999999987755678999999999999976543333 333 3458999999999999998888777652210
Q ss_pred ----e-eCCc--ccCCCCCEEEE--cHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCC--CCcEE
Q psy6275 130 ----I-TGDV--TINPSSSCLIM--TTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSD--NVRFV 198 (391)
Q Consensus 130 ----~-~g~~--~~~~~~~I~v~--Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~--~~~~i 198 (391)
. .... .......|.+. .|+.+.. ...+++|+||+|.+.+. ...+..+...+.. +.+++
T Consensus 240 ~~~~~~~~~~~i~~~nGs~i~~~s~~~~~lrG---------~~~~~~iiDE~~~~~~~--~~l~~~~~~~l~~~~~~~ii 308 (592)
T 3cpe_A 240 QPGIVEWNKGSIELDNGSSIGAYASSPDAVRG---------NSFAMIYIEDCAFIPNF--HDSWLAIQPVISSGRRSKII 308 (592)
T ss_dssp SCCEEEECSSEEEETTSCEEEEEECCHHHHHH---------SCCSEEEEETGGGCTTH--HHHHHHHHHHHSSSSCCEEE
T ss_pred ccccccCCccEEEecCCCEEEEEeCCCCCccC---------CCcceEEEehhccCCch--hHHHHHHHHHhccCCCceEE
Confidence 0 0100 11112333322 2443321 14789999999987542 2445555444432 34444
Q ss_pred EEcccCC
Q psy6275 199 FLSATIP 205 (391)
Q Consensus 199 ~~SAT~~ 205 (391)
. ..|+.
T Consensus 309 ~-isTP~ 314 (592)
T 3cpe_A 309 I-TTTPN 314 (592)
T ss_dssp E-EECCC
T ss_pred E-EeCCC
Confidence 3 33443
|
| >3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00016 Score=69.34 Aligned_cols=84 Identities=14% Similarity=0.046 Sum_probs=55.8
Q ss_pred cEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILRNM 153 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l~~~ 153 (391)
-.++.|+.|+|||......+ ...+.+|++||++++.++.+++.+.. . ......-|.|-+.++.
T Consensus 163 v~~I~G~aGsGKTt~I~~~~-----~~~~~lVlTpT~~aa~~l~~kl~~~~--------~---~~~~~~~V~T~dsfL~- 225 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEILSRV-----NFEEDLILVPGRQAAEMIRRRANASG--------I---IVATKDNVRTVDSFLM- 225 (446)
T ss_dssp EEEEEECTTSCHHHHHHHHC-----CTTTCEEEESCHHHHHHHHHHHTTTS--------C---CCCCTTTEEEHHHHHH-
T ss_pred EEEEEcCCCCCHHHHHHHHh-----ccCCeEEEeCCHHHHHHHHHHhhhcC--------c---cccccceEEEeHHhhc-
Confidence 46899999999998754332 12567999999999998887774321 0 1122345778887542
Q ss_pred HhcCccccCccceEEEeccccc
Q psy6275 154 LYRGSEITREVGWVIFDEIHYM 175 (391)
Q Consensus 154 l~~~~~~l~~~~~lViDE~h~~ 175 (391)
.......-..+++|+||+-.+
T Consensus 226 -~~~~~~~~~~d~liiDE~sm~ 246 (446)
T 3vkw_A 226 -NYGKGARCQFKRLFIDEGLML 246 (446)
T ss_dssp -TTTSSCCCCCSEEEEETGGGS
T ss_pred -CCCCCCCCcCCEEEEeCcccC
Confidence 222211124899999999865
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00017 Score=61.05 Aligned_cols=40 Identities=13% Similarity=0.074 Sum_probs=32.1
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIK 110 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~ 110 (391)
.++-.++.||+|+|||+.++-.+.+....+.+++++.|..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~ 41 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKI 41 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeecc
Confidence 3566889999999999987766666666788999998874
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00078 Score=58.68 Aligned_cols=113 Identities=14% Similarity=0.105 Sum_probs=65.8
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEIL 150 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l 150 (391)
.|.-.++.|++|+|||+..+-.+.+....+.+++++.|...-- . ........++ . ...+-+.+.+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r---~--~~~i~srlG~-------~-~~~~~~~~~~~i 77 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTR---S--IRNIQSRTGT-------S-LPSVEVESAPEI 77 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGG---G--CSSCCCCCCC-------S-SCCEEESSTHHH
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCch---H--HHHHHHhcCC-------C-ccccccCCHHHH
Confidence 4567889999999999988777777777888999998765310 0 0011111111 0 112335556666
Q ss_pred HHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEc
Q psy6275 151 RNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLS 201 (391)
Q Consensus 151 ~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 201 (391)
+..+..... -..+++||+||++.+.. ..++.+......+.++++..
T Consensus 78 ~~~i~~~~~-~~~~dvViIDEaQ~l~~----~~ve~l~~L~~~gi~Vil~G 123 (223)
T 2b8t_A 78 LNYIMSNSF-NDETKVIGIDEVQFFDD----RICEVANILAENGFVVIISG 123 (223)
T ss_dssp HHHHHSTTS-CTTCCEEEECSGGGSCT----HHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHhh-CCCCCEEEEecCccCcH----HHHHHHHHHHhCCCeEEEEe
Confidence 666554321 23589999999997632 23333333223355555543
|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00044 Score=58.82 Aligned_cols=40 Identities=13% Similarity=0.047 Sum_probs=33.3
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIK 110 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~ 110 (391)
.|+-.++.||+|+|||+..+-.+.+...++.+++++.|..
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~ 46 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEI 46 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEecc
Confidence 3556789999999999988877777777899999999874
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00022 Score=58.15 Aligned_cols=36 Identities=22% Similarity=0.322 Sum_probs=23.7
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEE
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYT 106 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl 106 (391)
.++.+++.||+|+|||.......-.....+.+++++
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~ 70 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYI 70 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEE
Confidence 678899999999999987544433332334344444
|
| >2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00031 Score=60.51 Aligned_cols=40 Identities=13% Similarity=0.047 Sum_probs=32.9
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKA 111 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~ 111 (391)
|+-.+++|+.|+|||+.++-.+.+....+.+++++.|...
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccC
Confidence 4556789999999999988888888888999999998764
|
| >1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00044 Score=58.61 Aligned_cols=39 Identities=8% Similarity=-0.015 Sum_probs=33.2
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEccc
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPI 109 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~ 109 (391)
.++-.++.||.|+|||.-.+-.+-+....+.+++++.|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc
Confidence 467789999999999987777777777788999999887
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.002 Score=59.38 Aligned_cols=36 Identities=25% Similarity=0.395 Sum_probs=25.4
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcc
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTP 108 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P 108 (391)
..+++.||+|+|||..+-...-.....+..++++..
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~ 73 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSA 73 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEH
Confidence 589999999999998765444333334666777643
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0027 Score=52.88 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=17.8
Q ss_pred CCcEEEEecCCcchHHHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~ 93 (391)
..++++.||+|+|||..+....
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~ 64 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLA 64 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHH
Confidence 5689999999999998764443
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0014 Score=57.14 Aligned_cols=36 Identities=19% Similarity=0.261 Sum_probs=24.8
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEE
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYT 106 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl 106 (391)
.++++++.||+|+|||..+....-.....+..++++
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~ 86 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYI 86 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 467899999999999987654443333344555555
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0039 Score=57.24 Aligned_cols=118 Identities=7% Similarity=0.075 Sum_probs=59.4
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhc-------CCeEEEEcccH-----HHHHHHHHHHHHhcccceeeeCCcccCC
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQ-------SQRVIYTTPIK-----ALSNQKYREFEEQFKDVGLITGDVTINP 138 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~-------~~~vlvl~P~~-----~L~~q~~~~~~~~~~~v~~~~g~~~~~~ 138 (391)
.+.+++++||||+|||.+.-..+-..-.. ...++.+--.. .....+++.+ .+ . ....
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L---~g-------~-~~~~ 112 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAI---SK-------E-NLCG 112 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHH---SC-------C-C--C
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHh---cC-------C-CCCc
Confidence 45689999999999998864444332211 23455553211 2222332222 11 1 0000
Q ss_pred CCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHh---CCCCcEEEEcccCCCh
Q psy6275 139 SSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILL---SDNVRFVFLSATIPNA 207 (391)
Q Consensus 139 ~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~---~~~~~~i~~SAT~~~~ 207 (391)
-.+-+.+..++......-...-++++||+|.+.+ ...+..++... ..+.-+|+.++|+...
T Consensus 113 -----~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~---q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~ 176 (318)
T 3te6_A 113 -----DISLEALNFYITNVPKAKKRKTLILIQNPENLLS---EKILQYFEKWISSKNSKLSIICVGGHNVTI 176 (318)
T ss_dssp -----CCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCC---THHHHHHHHHHHCSSCCEEEEEECCSSCCC
T ss_pred -----hHHHHHHHHHHHHhhhccCCceEEEEecHHHhhc---chHHHHHHhcccccCCcEEEEEEecCcccc
Confidence 0122344444443211223566999999999872 22333343322 2235577788887654
|
| >3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0007 Score=58.21 Aligned_cols=41 Identities=12% Similarity=0.110 Sum_probs=32.2
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKA 111 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~ 111 (391)
.|.-.+++||.|+|||+..+-.+.+....+.+++++.|...
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D 67 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAID 67 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC--
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccC
Confidence 46667899999999998776666666677889999999764
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0019 Score=60.67 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=17.7
Q ss_pred CCcEEEEecCCcchHHHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~ 93 (391)
+.+++++||+|+|||.......
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~ 65 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVL 65 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHH
Confidence 4689999999999998764433
|
| >2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00088 Score=58.27 Aligned_cols=41 Identities=10% Similarity=0.009 Sum_probs=35.1
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKA 111 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~ 111 (391)
.|+-.+++|+.|+|||+..+-.+.+....+.+++++-|.+.
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D 58 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKD 58 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTC
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCC
Confidence 46677899999999999988888888888999999988764
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0017 Score=55.41 Aligned_cols=34 Identities=12% Similarity=0.134 Sum_probs=24.2
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEE
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYT 106 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl 106 (391)
+++++.||+|+|||..+..........+..++++
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~ 88 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIV 88 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 7899999999999987654443343445566555
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0012 Score=60.68 Aligned_cols=36 Identities=8% Similarity=0.074 Sum_probs=27.0
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHH-hcCCeEEEEc
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSL-KQSQRVIYTT 107 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l-~~~~~vlvl~ 107 (391)
++++++.||+|+|||..+........ ..+.+++++.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 57899999999999998765555555 5666676653
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0093 Score=49.58 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=17.6
Q ss_pred CCcEEEEecCCcchHHHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~ 93 (391)
..+++++||+|+|||..+...+
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~ 64 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLA 64 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHH
Confidence 3679999999999998764433
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0023 Score=61.79 Aligned_cols=101 Identities=17% Similarity=0.215 Sum_probs=52.8
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHhc--CCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLKQ--SQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEIL 150 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~~--~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l 150 (391)
..+++.||+|+|||..+....-..... +.+++++.. ..+..++...+... ..+.+
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~-~~~~~~~~~~~~~~----------------------~~~~~ 187 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS-EKFLNDLVDSMKEG----------------------KLNEF 187 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEH-HHHHHHHHHHHHTT----------------------CHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH-HHHHHHHHHHHHcc----------------------cHHHH
Confidence 579999999999998764433333222 556666643 33433333322210 11122
Q ss_pred HHHHhcCccccC-ccceEEEecccccCcc-ccchhHHHHHHH-hCCCCcEEEEccc
Q psy6275 151 RNMLYRGSEITR-EVGWVIFDEIHYMRDK-ERGYVWEETLIL-LSDNVRFVFLSAT 203 (391)
Q Consensus 151 ~~~l~~~~~~l~-~~~~lViDE~h~~~~~-~~~~~~~~i~~~-~~~~~~~i~~SAT 203 (391)
... +. ..+++++||+|.+.+. .....+..++.. ...+.++++.|..
T Consensus 188 ~~~-------~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 188 REK-------YRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp HHH-------HTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred HHH-------hcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 221 22 5789999999998642 111122223322 3445566554443
|
| >2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0026 Score=64.03 Aligned_cols=114 Identities=18% Similarity=0.239 Sum_probs=75.2
Q ss_pred CCcHHHHHHHHHHhc--CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCc
Q psy6275 57 VLDPFQKEAILCIEN--NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDV 134 (391)
Q Consensus 57 ~~~~~Q~~~i~~i~~--~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~ 134 (391)
.+|.-|.+++..+.. ....++.|+-|.|||.+.-+.+... ..+++|.+|+.+-+..+.+-..+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~---~~~~~vtAP~~~a~~~l~~~~~~------------ 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRI---AGRAIVTAPAKASTDVLAQFAGE------------ 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHS---SSCEEEECSSCCSCHHHHHHHGG------------
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHH---HhCcEEECCCHHHHHHHHHHhhC------------
Confidence 589999999998865 4457999999999997654444333 23579999998876654432211
Q ss_pred ccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEcccCCC
Q psy6275 135 TINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPN 206 (391)
Q Consensus 135 ~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 206 (391)
.|-+..|+.+.. .....+++|||||=.+. .+.+..++. .-..++||.|...
T Consensus 240 ------~i~~~~Pd~~~~-------~~~~~dlliVDEAAaIp----~pll~~ll~----~~~~v~~~tTv~G 290 (671)
T 2zpa_A 240 ------KFRFIAPDALLA-------SDEQADWLVVDEAAAIP----APLLHQLVS----RFPRTLLTTTVQG 290 (671)
T ss_dssp ------GCCBCCHHHHHH-------SCCCCSEEEEETGGGSC----HHHHHHHHT----TSSEEEEEEEBSS
T ss_pred ------CeEEeCchhhhh-------CcccCCEEEEEchhcCC----HHHHHHHHh----hCCeEEEEecCCc
Confidence 144556765431 23368999999998763 334444443 2335777778654
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0037 Score=58.86 Aligned_cols=36 Identities=25% Similarity=0.290 Sum_probs=24.0
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhc--------CCeEEEEc
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQ--------SQRVIYTT 107 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~--------~~~vlvl~ 107 (391)
.+.+++.||+|+|||..+...+-..... +..++++.
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~ 88 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN 88 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE
Confidence 4579999999999998764443332222 55666664
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.011 Score=52.96 Aligned_cols=21 Identities=33% Similarity=0.373 Sum_probs=17.0
Q ss_pred CcEEEEecCCcchHHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~ 93 (391)
.++++.||+|+|||..+....
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia 85 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIA 85 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHH
Confidence 579999999999998764433
|
| >3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0017 Score=70.79 Aligned_cols=69 Identities=22% Similarity=0.206 Sum_probs=55.5
Q ss_pred cCCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcC------CeEEEEcccHHHHHHHHHHHHHh
Q psy6275 53 EYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQS------QRVIYTTPIKALSNQKYREFEEQ 123 (391)
Q Consensus 53 ~~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~------~~vlvl~P~~~L~~q~~~~~~~~ 123 (391)
..+..+|+-|.++|.. .+++++|.|+.|||||.+.+.-+...+..+ .+++++++|++.+.++..++...
T Consensus 6 ~~~~~~t~eQ~~~i~~--~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~ 80 (1232)
T 3u4q_A 6 PADSTWTDDQWNAIVS--TGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEA 80 (1232)
T ss_dssp ----CCCHHHHHHHHC--CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHH
Confidence 3456799999999975 488999999999999999877677766543 48999999999999999888774
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.007 Score=56.72 Aligned_cols=36 Identities=19% Similarity=0.419 Sum_probs=23.8
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhc---CCeEEEEc
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQ---SQRVIYTT 107 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~---~~~vlvl~ 107 (391)
++.+++.||+|+|||......+-..... +..++++.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~ 83 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN 83 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 5689999999999998764433222222 45666654
|
| >1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0021 Score=65.71 Aligned_cols=67 Identities=21% Similarity=0.216 Sum_probs=55.0
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc----CCeEEEEcccHHHHHHHHHHHHHhcc
Q psy6275 57 VLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ----SQRVIYTTPIKALSNQKYREFEEQFK 125 (391)
Q Consensus 57 ~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~----~~~vlvl~P~~~L~~q~~~~~~~~~~ 125 (391)
.+++-|.+++.. .+.+++|.|+.|||||.+...-+...+.. ..++|+++.|+..+.++.+++....+
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 478999999975 46789999999999999876655555532 46899999999999999999987653
|
| >1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0033 Score=64.70 Aligned_cols=66 Identities=20% Similarity=0.200 Sum_probs=54.6
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc----CCeEEEEcccHHHHHHHHHHHHHhc
Q psy6275 57 VLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ----SQRVIYTTPIKALSNQKYREFEEQF 124 (391)
Q Consensus 57 ~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~----~~~vlvl~P~~~L~~q~~~~~~~~~ 124 (391)
.+++-|.+|+.. .+.+++|.|+.|||||.+...-+...+.. ..++|+++.|+..+.++.+++....
T Consensus 11 ~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l 80 (724)
T 1pjr_A 11 HLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLL 80 (724)
T ss_dssp TSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 389999999875 46789999999999999876666666543 3589999999999999999888764
|
| >1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0057 Score=56.72 Aligned_cols=39 Identities=10% Similarity=0.136 Sum_probs=28.1
Q ss_pred CcHHHHHHHHHH----hcCC---cEEEEecCCcchHHHHHHHHHHH
Q psy6275 58 LDPFQKEAILCI----ENNQ---SVLVSAHTSAGKTVVAEYAIASS 96 (391)
Q Consensus 58 ~~~~Q~~~i~~i----~~~~---~~li~apTGsGKT~~~~~~~~~~ 96 (391)
+.|||.+++..+ .+++ .+++.||+|+|||..+...+-..
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l 48 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYL 48 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHH
Confidence 358888887654 3443 38999999999998866555443
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=96.66 E-value=0.019 Score=55.05 Aligned_cols=130 Identities=12% Similarity=0.049 Sum_probs=69.0
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEc--ccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTT--PIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEIL 150 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~--P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l 150 (391)
..++++|++|+|||+.....+......+.+++++. +.+.-+.+....+....+ +.+...... ..|..+
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~g-v~~~~~~~~---------~dp~~i 167 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIG-VQVYGEPNN---------QNPIEI 167 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTT-CCEECCTTC---------SCHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcC-Cceeecccc---------CCHHHH
Confidence 35789999999999987554444445677887765 444444333333333221 212211111 124333
Q ss_pred H-HHHhcCccccCccceEEEecccccC---ccccchhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHHh
Q psy6275 151 R-NMLYRGSEITREVGWVIFDEIHYMR---DKERGYVWEETLILLSDNVRFVFLSATIPNA-SQFAQWV 214 (391)
Q Consensus 151 ~-~~l~~~~~~l~~~~~lViDE~h~~~---~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l 214 (391)
. ..+... ....++++|+|++.++. +...-..+..+.....+..-++.++|+.... ...+..+
T Consensus 168 ~~~al~~a--~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f 234 (433)
T 3kl4_A 168 AKKGVDIF--VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRF 234 (433)
T ss_dssp HHHHHHHT--TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHH
T ss_pred HHHHHHHH--HhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHH
Confidence 2 222211 12478999999998653 2222233444555555556677788876443 3444443
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0051 Score=57.88 Aligned_cols=34 Identities=18% Similarity=0.228 Sum_probs=23.0
Q ss_pred cEEEEecCCcchHHHHHHHHHHHHhc-CCeEEEEc
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASSLKQ-SQRVIYTT 107 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~l~~-~~~vlvl~ 107 (391)
.+++.||+|+|||...-...-..... +..++++.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~ 80 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN 80 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe
Confidence 79999999999998764433332222 35666664
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0036 Score=50.26 Aligned_cols=22 Identities=14% Similarity=0.226 Sum_probs=18.3
Q ss_pred HHhcCCcEEEEecCCcchHHHH
Q psy6275 68 CIENNQSVLVSAHTSAGKTVVA 89 (391)
Q Consensus 68 ~i~~~~~~li~apTGsGKT~~~ 89 (391)
....+.++++.||+|+|||..+
T Consensus 23 ~~~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 23 AAKRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp HHTCSSCEEEEEETTCCHHHHH
T ss_pred HhCCCCcEEEECCCCccHHHHH
Confidence 3456789999999999999864
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0047 Score=49.69 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=18.5
Q ss_pred hcCCcEEEEecCCcchHHHHHH
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEY 91 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~ 91 (391)
..+.++++.||+|+|||..+-.
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~ 43 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARY 43 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHH
Confidence 4678999999999999987643
|
| >1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0032 Score=53.33 Aligned_cols=39 Identities=21% Similarity=0.145 Sum_probs=34.2
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEccc
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPI 109 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~ 109 (391)
...++++..++|.|||.+++-..++.+..+.+|+++.-.
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~ 65 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFI 65 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEee
Confidence 345899999999999999999999999999999999533
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.025 Score=48.18 Aligned_cols=20 Identities=30% Similarity=0.283 Sum_probs=16.2
Q ss_pred CcEEEEecCCcchHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~ 92 (391)
.++++.||+|+|||......
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l 58 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIAL 58 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 46999999999999875433
|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.008 Score=55.27 Aligned_cols=40 Identities=10% Similarity=0.088 Sum_probs=23.5
Q ss_pred CccceEEEecccccC-ccccchhHHHHHHHhCCCCcEEEEcc
Q psy6275 162 REVGWVIFDEIHYMR-DKERGYVWEETLILLSDNVRFVFLSA 202 (391)
Q Consensus 162 ~~~~~lViDE~h~~~-~~~~~~~~~~i~~~~~~~~~~i~~SA 202 (391)
...+++++||+|.+. .. ....+..++...+.+.++|+.|.
T Consensus 104 ~~~~vliiDEi~~l~~~~-~~~~L~~~le~~~~~~~iI~~~n 144 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAE-SQRHLRSFMEAYSSNCSIIITAN 144 (324)
T ss_dssp SCEEEEEEESCCCGGGHH-HHHHHHHHHHHHGGGCEEEEEES
T ss_pred CCCeEEEEECCcccCcHH-HHHHHHHHHHhCCCCcEEEEEeC
Confidence 367899999999885 22 22233334444444566666433
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.037 Score=50.23 Aligned_cols=20 Identities=25% Similarity=0.265 Sum_probs=16.6
Q ss_pred CCcEEEEecCCcchHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEY 91 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~ 91 (391)
+.++++.||+|+|||..+..
T Consensus 67 ~~~vll~G~~GtGKT~la~~ 86 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALK 86 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 34799999999999987643
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=96.07 E-value=0.034 Score=51.06 Aligned_cols=32 Identities=13% Similarity=0.244 Sum_probs=21.5
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEE
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYT 106 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl 106 (391)
.+++++.||+|+|||..+-...-.. +..++.+
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~---~~~~~~v 82 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEA---NSTFFSV 82 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHH---TCEEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH---CCCEEEE
Confidence 3579999999999998764433222 4444444
|
| >1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0062 Score=54.73 Aligned_cols=76 Identities=14% Similarity=0.121 Sum_probs=56.1
Q ss_pred ccHHHHHHHHHHc--CCCcEEEEEcchhhHHHHHHHhhcc-CCCC--------hHHHHHHHHHHHHH--hh-hcchhhcc
Q psy6275 293 TNCFKIVKMIMER--NLAPVIVFSFSKKDCEIYAMQMAKL-NFNE--------TEEVKLVDDVFSNA--MD-VLSEEDRK 358 (391)
Q Consensus 293 ~~~~~l~~~l~~~--~~~~~iIF~~t~~~~~~la~~L~~~-g~~~--------~~~r~~~~~~~~~~--~~-~l~~~d~~ 358 (391)
.++..+.+++... .+.++||||+++..++.++..|... |+.. ..+|+.+.+.|++. .. .|++++
T Consensus 96 ~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~-- 173 (271)
T 1z5z_A 96 GKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVK-- 173 (271)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECC--
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehh--
Confidence 4555666666553 5679999999999999999999863 5543 47888888888875 23 456664
Q ss_pred CcchHhHHHHHHhhhhhccCC
Q psy6275 359 LPQIENILPLLRRGIGIHHGV 379 (391)
Q Consensus 359 ~~~~~~~~~~l~~GI~~~h~~ 379 (391)
+.++|+++..++
T Consensus 174 ---------~~g~Glnl~~a~ 185 (271)
T 1z5z_A 174 ---------AGGFGINLTSAN 185 (271)
T ss_dssp ---------TTCCCCCCTTCS
T ss_pred ---------hhcCCcCcccCC
Confidence 778899987554
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.033 Score=49.97 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=17.7
Q ss_pred cCCcEEEEecCCcchHHHHHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~ 92 (391)
..+.+++.||+|+|||..+-..
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~l 71 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAV 71 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHH
Confidence 4578999999999999875433
|
| >2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.016 Score=51.57 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=18.1
Q ss_pred hcCCcEEEEecCCcchHHHHHH
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEY 91 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~ 91 (391)
..+.++++.||+|+|||..+-.
T Consensus 27 ~~~~~vll~G~~GtGKt~la~~ 48 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIASR 48 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHHHH
T ss_pred CCCCCEEEECCCCCcHHHHHHH
Confidence 4567899999999999987533
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.048 Score=46.95 Aligned_cols=38 Identities=24% Similarity=0.360 Sum_probs=28.0
Q ss_pred hcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEc
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTT 107 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~ 107 (391)
..|..+++.||+|+|||+.....+......+.+++++.
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 35678899999999999876555544445567787775
|
| >1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.92 E-value=0.039 Score=54.27 Aligned_cols=33 Identities=15% Similarity=0.258 Sum_probs=23.5
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcc
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTP 108 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P 108 (391)
+.++++||+|+|||..+...+-. + +..++.+..
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~-l--~~~~i~in~ 110 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQE-L--GYDILEQNA 110 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH-T--TCEEEEECT
T ss_pred cEEEEECCCCCCHHHHHHHHHHH-c--CCCEEEEeC
Confidence 67999999999999876444332 2 566666644
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.063 Score=51.42 Aligned_cols=122 Identities=11% Similarity=0.082 Sum_probs=65.0
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEc--ccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTT--PIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEIL 150 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~--P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l 150 (391)
..++++|++|+|||++..-.+......+.+++++. |.+.-+.+....+....+ +.+...... ..|..+
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~g-vpv~~~~~~---------~dp~~i 170 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYH-IEVFGNPQE---------KDAIKL 170 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGT-CEEECCTTC---------CCHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcC-CcEEecCCC---------CCHHHH
Confidence 35789999999999987555544445677887775 555555444444443332 212211110 124333
Q ss_pred H-HHHhcCccccCccceEEEecccccCcc-ccchhHHHHHHHhCCCCcEEEEcccCCC
Q psy6275 151 R-NMLYRGSEITREVGWVIFDEIHYMRDK-ERGYVWEETLILLSDNVRFVFLSATIPN 206 (391)
Q Consensus 151 ~-~~l~~~~~~l~~~~~lViDE~h~~~~~-~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 206 (391)
. ..+.... -..++++|+|.+-.+... ..-..+..+.....+..-++.+.|+...
T Consensus 171 ~~~al~~a~--~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq 226 (443)
T 3dm5_A 171 AKEGVDYFK--SKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQ 226 (443)
T ss_dssp HHHHHHHHH--HTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGG
T ss_pred HHHHHHHHH--hCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCch
Confidence 2 2222111 125899999999765321 1111233344444455567777887643
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.85 E-value=0.024 Score=52.62 Aligned_cols=43 Identities=19% Similarity=0.335 Sum_probs=24.8
Q ss_pred cCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEcccC
Q psy6275 161 TREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATI 204 (391)
Q Consensus 161 l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 204 (391)
..+.+++|+||+|.+. ......+..++...+.+..+|+.|..+
T Consensus 132 ~~~~~vlilDE~~~L~-~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 132 AHRYKCVIINEANSLT-KDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp --CCEEEEEECTTSSC-HHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred CCCCeEEEEeCccccC-HHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 3467899999999853 222333444444445555566655544
|
| >1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.79 E-value=0.049 Score=49.64 Aligned_cols=20 Identities=25% Similarity=0.245 Sum_probs=16.4
Q ss_pred cEEEEecCCcchHHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~ 93 (391)
++++.||+|+|||..+....
T Consensus 48 ~~ll~G~~G~GKT~la~~l~ 67 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALA 67 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHH
Confidence 69999999999998764433
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=95.65 E-value=0.23 Score=46.15 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=17.2
Q ss_pred CcEEEEecCCcchHHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~ 93 (391)
+.+++.||+|+|||..+....
T Consensus 71 ~~vLl~GppGtGKT~la~~la 91 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMA 91 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 579999999999998764443
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.069 Score=47.02 Aligned_cols=21 Identities=24% Similarity=0.360 Sum_probs=16.9
Q ss_pred CCcEEEEecCCcchHHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~ 92 (391)
.+.+++.||+|+|||..+-..
T Consensus 39 ~~~vll~G~~GtGKT~la~~l 59 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAV 59 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 457899999999999875433
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.021 Score=52.81 Aligned_cols=39 Identities=23% Similarity=0.285 Sum_probs=31.1
Q ss_pred hcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcc
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTP 108 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P 108 (391)
..|.-+++.|++|+|||..++-.+......+..|+|+..
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 456779999999999998877666666567888888864
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.11 Score=44.71 Aligned_cols=19 Identities=32% Similarity=0.401 Sum_probs=15.7
Q ss_pred cEEEEecCCcchHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~ 92 (391)
.+++.||+|+|||......
T Consensus 47 ~~ll~G~~G~GKT~l~~~~ 65 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLL 65 (250)
T ss_dssp EEEEECSTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999875433
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=95.43 E-value=0.067 Score=51.54 Aligned_cols=39 Identities=15% Similarity=0.065 Sum_probs=29.2
Q ss_pred hcCCcEEEEecCCcchHHHHHHHHHHHHh-cCCeEEEEcc
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEYAIASSLK-QSQRVIYTTP 108 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~~~~~~l~-~~~~vlvl~P 108 (391)
..|.-+++.|++|+|||...+..+..... .+.+|+|+..
T Consensus 198 ~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 34567899999999999877666666554 4667888754
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.42 E-value=0.1 Score=47.88 Aligned_cols=19 Identities=21% Similarity=0.385 Sum_probs=16.2
Q ss_pred CcEEEEecCCcchHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEY 91 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~ 91 (391)
+.+++.||+|+|||..+-.
T Consensus 46 ~~iLL~GppGtGKT~la~a 64 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKA 64 (322)
T ss_dssp SEEEEESSSSSCHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHH
Confidence 6799999999999987543
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.096 Score=49.42 Aligned_cols=34 Identities=18% Similarity=0.262 Sum_probs=22.7
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcc
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTP 108 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P 108 (391)
.+++++.||+|+|||..+-...-. .+..++.+.+
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~---~~~~~~~v~~ 181 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAE---SNATFFNISA 181 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHH---TTCEEEEECS
T ss_pred CceEEEECCCCCCHHHHHHHHHHh---hcCcEEEeeH
Confidence 478999999999999876443222 2445555443
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.095 Score=48.83 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=17.5
Q ss_pred CCcEEEEecCCcchHHHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~ 93 (391)
.+.+++.||+|+|||..+-..+
T Consensus 84 ~~~iLL~GppGtGKT~la~ala 105 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVA 105 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHH
Confidence 3579999999999998764433
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=95.27 E-value=0.05 Score=46.48 Aligned_cols=35 Identities=20% Similarity=0.151 Sum_probs=26.3
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcc
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTP 108 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P 108 (391)
.|.-+++.||+|+|||+.+...+. ..+.+++++.-
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~ 53 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDT 53 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEES
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEEC
Confidence 467789999999999987654444 45678888753
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.15 Score=48.13 Aligned_cols=32 Identities=19% Similarity=0.283 Sum_probs=21.8
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEE
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYT 106 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl 106 (391)
.+.+++.||+|+|||+.+-..+-+. +...+.+
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e~---~~~f~~v 213 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHHT---DCKFIRV 213 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHHH---TCEEEEE
T ss_pred CCceEEeCCCCCCHHHHHHHHHHhh---CCCceEE
Confidence 4789999999999998754443332 4444444
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.18 E-value=0.028 Score=54.25 Aligned_cols=20 Identities=30% Similarity=0.418 Sum_probs=16.4
Q ss_pred CcEEEEecCCcchHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~ 92 (391)
.+++++||+|+|||..+-..
T Consensus 51 ~~vLL~GppGtGKTtlAr~i 70 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVI 70 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHH
Confidence 46999999999999875433
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=95.14 E-value=0.13 Score=47.04 Aligned_cols=51 Identities=18% Similarity=0.128 Sum_probs=35.2
Q ss_pred hcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHH
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFE 121 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~ 121 (391)
..|.-+++.|++|+|||..++..+.....++.+++|+... .-..|+..++.
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE-~s~~~l~~R~~ 116 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE-MGKKENIKRLI 116 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS-SCHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC-CCHHHHHHHHH
Confidence 4567799999999999987766666666667788888643 23344444443
|
| >1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* | Back alignment and structure |
|---|
Probab=95.14 E-value=0.064 Score=50.69 Aligned_cols=22 Identities=18% Similarity=0.460 Sum_probs=16.7
Q ss_pred CCcEEE--EecCCcchHHHHHHHH
Q psy6275 72 NQSVLV--SAHTSAGKTVVAEYAI 93 (391)
Q Consensus 72 ~~~~li--~apTGsGKT~~~~~~~ 93 (391)
+..+++ +||+|+|||.......
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~ 73 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTV 73 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHH
Confidence 346788 8999999998764443
|
| >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.071 Score=49.05 Aligned_cols=20 Identities=30% Similarity=0.421 Sum_probs=16.7
Q ss_pred CcEEEEecCCcchHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~ 92 (391)
.++++.||+|+|||..+...
T Consensus 56 ~~vll~G~~GtGKT~la~~i 75 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANII 75 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHH
Confidence 58999999999999875443
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.13 E-value=0.084 Score=48.74 Aligned_cols=24 Identities=17% Similarity=0.189 Sum_probs=18.3
Q ss_pred HHhcC--CcEEEEecCCcchHHHHHH
Q psy6275 68 CIENN--QSVLVSAHTSAGKTVVAEY 91 (391)
Q Consensus 68 ~i~~~--~~~li~apTGsGKT~~~~~ 91 (391)
.+..+ .++++.||+|+|||..+..
T Consensus 52 ~l~~~~~~~~ll~G~~G~GKT~la~~ 77 (353)
T 1sxj_D 52 TLKSANLPHMLFYGPPGTGKTSTILA 77 (353)
T ss_dssp HTTCTTCCCEEEECSTTSSHHHHHHH
T ss_pred HHhcCCCCEEEEECCCCCCHHHHHHH
Confidence 34444 5699999999999987543
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=95.12 E-value=0.013 Score=54.69 Aligned_cols=39 Identities=21% Similarity=0.211 Sum_probs=31.2
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEccc
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPI 109 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~ 109 (391)
.|+.+++.||+|+|||...+..+......+.+++|+.-.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E 98 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 98 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 356799999999999998777766666678888888654
|
| >1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=95.08 E-value=0.021 Score=52.15 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=18.0
Q ss_pred hcCCcEEEEecCCcchHHHHHH
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEY 91 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~ 91 (391)
..+.++++.||||+|||..+-.
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~ 44 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARA 44 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHH
T ss_pred CCCCcEEEECCCCchHHHHHHH
Confidence 3467899999999999987543
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=95.08 E-value=0.2 Score=45.37 Aligned_cols=123 Identities=18% Similarity=0.182 Sum_probs=61.9
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHH-hcCCeEEEEc--ccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSL-KQSQRVIYTT--PIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTE 148 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l-~~~~~vlvl~--P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~ 148 (391)
++.++++||+|+|||+.....+.... ..+.+++++. +.+..+.+....+.+..+ +.... ...+.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~g-l~~~~------------~~~~~ 171 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQ-APLEV------------CYTKE 171 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTT-CCCCB------------CSSHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcC-CCeEe------------cCCHH
Confidence 56788999999999987654443333 3565777664 333333332233322211 11100 01344
Q ss_pred HHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhC---CCCcEEEEcccCCChHHHHHHh
Q psy6275 149 ILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLS---DNVRFVFLSATIPNASQFAQWV 214 (391)
Q Consensus 149 ~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~---~~~~~i~~SAT~~~~~~~~~~l 214 (391)
.+...+.. +.+.+++|+|.+-.... ....+..+...+. ....++.+.+|. ...++.++.
T Consensus 172 ~l~~al~~----~~~~dlvIiDT~G~~~~--~~~~~~el~~~l~~~~~~~~~lVl~at~-~~~~~~~~~ 233 (296)
T 2px0_A 172 EFQQAKEL----FSEYDHVFVDTAGRNFK--DPQYIDELKETIPFESSIQSFLVLSATA-KYEDMKHIV 233 (296)
T ss_dssp HHHHHHHH----GGGSSEEEEECCCCCTT--SHHHHHHHHHHSCCCTTEEEEEEEETTB-CHHHHHHHT
T ss_pred HHHHHHHH----hcCCCEEEEeCCCCChh--hHHHHHHHHHHHhhcCCCeEEEEEECCC-CHHHHHHHH
Confidence 44443432 35789999997654321 1223334444443 222366676664 333444443
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=95.07 E-value=0.082 Score=51.09 Aligned_cols=39 Identities=21% Similarity=0.233 Sum_probs=29.3
Q ss_pred hcCCcEEEEecCCcchHHHHHHHHHHHHh-cCCeEEEEcc
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEYAIASSLK-QSQRVIYTTP 108 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~~~~~~l~-~~~~vlvl~P 108 (391)
..|.-+++.|++|+|||...+..+..... .+.+|+|+..
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 35677999999999999877666655544 4667888864
|
| >2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.06 E-value=0.051 Score=49.58 Aligned_cols=19 Identities=16% Similarity=0.078 Sum_probs=15.7
Q ss_pred cEEEEecCCcchHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~ 92 (391)
..++.||.|+|||..+...
T Consensus 20 ~~Lf~Gp~G~GKtt~a~~l 38 (305)
T 2gno_A 20 SILINGEDLSYPREVSLEL 38 (305)
T ss_dssp EEEEECSSSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999875443
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.06 E-value=0.078 Score=48.99 Aligned_cols=25 Identities=16% Similarity=0.207 Sum_probs=18.7
Q ss_pred HhcCCc--EEEEecCCcchHHHHHHHH
Q psy6275 69 IENNQS--VLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 69 i~~~~~--~li~apTGsGKT~~~~~~~ 93 (391)
+..|+- +++.||+|+|||..+...+
T Consensus 41 i~~g~~~~~ll~Gp~G~GKTtla~~la 67 (340)
T 1sxj_C 41 VDEGKLPHLLFYGPPGTGKTSTIVALA 67 (340)
T ss_dssp HHTTCCCCEEEECSSSSSHHHHHHHHH
T ss_pred HhcCCCceEEEECCCCCCHHHHHHHHH
Confidence 445543 8999999999998765443
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=95.00 E-value=0.037 Score=51.64 Aligned_cols=90 Identities=17% Similarity=0.141 Sum_probs=53.2
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEE---cH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIM---TT 147 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~---Tp 147 (391)
.++.+++.|++|+|||..++..+......+.+++|+.....+-.+.. ..+.... .++.+. +.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a---~~~g~~~------------~~l~i~~~~~~ 126 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYA---RKLGVDI------------DNLLCSQPDTG 126 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHH---HHTTCCG------------GGCEEECCSSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHH---HHcCCCh------------hheeeeCCCCH
Confidence 45779999999999999887776666667788988876433322221 2221111 012222 33
Q ss_pred HHHHHHHhcCccccCccceEEEecccccC
Q psy6275 148 EILRNMLYRGSEITREVGWVIFDEIHYMR 176 (391)
Q Consensus 148 ~~l~~~l~~~~~~l~~~~~lViDE~h~~~ 176 (391)
+.+...+..-. .-..+++||||.+..+.
T Consensus 127 e~~~~~~~~l~-~~~~~~lVVIDsl~~l~ 154 (356)
T 1u94_A 127 EQALEICDALA-RSGAVDVIVVDSVAALT 154 (356)
T ss_dssp HHHHHHHHHHH-HHTCCSEEEEECGGGCC
T ss_pred HHHHHHHHHHH-hccCCCEEEEcCHHHhc
Confidence 44444332110 01368999999999875
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.99 E-value=0.1 Score=48.60 Aligned_cols=21 Identities=19% Similarity=0.401 Sum_probs=17.4
Q ss_pred CCcEEEEecCCcchHHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~ 92 (391)
.+.+++.||+|+|||..+-..
T Consensus 117 ~~~vLl~GppGtGKT~la~ai 137 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCI 137 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 568999999999999876443
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.91 E-value=0.048 Score=50.78 Aligned_cols=48 Identities=29% Similarity=0.243 Sum_probs=34.7
Q ss_pred HHHHHhc------CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHH
Q psy6275 65 AILCIEN------NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKAL 112 (391)
Q Consensus 65 ~i~~i~~------~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L 112 (391)
.++.++. |.-+++.||+|+|||+..+..+......+.+++|+.....+
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL 101 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc
Confidence 3455554 46789999999999987766665555667889998765444
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=94.85 E-value=0.1 Score=50.17 Aligned_cols=39 Identities=23% Similarity=0.190 Sum_probs=31.4
Q ss_pred hcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcc
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTP 108 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P 108 (391)
..|.-+++.|++|+|||...+-.+.+...++.+++|+.-
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 346779999999999999887777776666788988864
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=94.81 E-value=0.2 Score=45.07 Aligned_cols=20 Identities=25% Similarity=0.376 Sum_probs=17.1
Q ss_pred CCcEEEEecCCcchHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEY 91 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~ 91 (391)
++.+++.||+|+|||..+-.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~ 73 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARA 73 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHH
Confidence 57899999999999987543
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=94.78 E-value=0.058 Score=50.52 Aligned_cols=90 Identities=16% Similarity=0.143 Sum_probs=53.2
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEE---EcH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLI---MTT 147 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v---~Tp 147 (391)
.+..+++.||+|+|||..++..+......+.+++|+.....+. +.. ........ .++.+ .|.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~-~~~--a~~~g~d~------------~~l~i~~~~~~ 137 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALD-PVY--ARALGVNT------------DELLVSQPDNG 137 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC-HHH--HHHTTCCG------------GGCEEECCSSH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChh-HHH--HHHcCCCH------------HHceeecCCcH
Confidence 3567899999999999887766666666778888887544332 221 11211111 01222 134
Q ss_pred HHHHHHHhcCccccCccceEEEecccccC
Q psy6275 148 EILRNMLYRGSEITREVGWVIFDEIHYMR 176 (391)
Q Consensus 148 ~~l~~~l~~~~~~l~~~~~lViDE~h~~~ 176 (391)
+.++..+..... -..+++||||.+..+.
T Consensus 138 e~~l~~l~~l~~-~~~~~lVVIDsl~~l~ 165 (366)
T 1xp8_A 138 EQALEIMELLVR-SGAIDVVVVDSVAALT 165 (366)
T ss_dssp HHHHHHHHHHHT-TTCCSEEEEECTTTCC
T ss_pred HHHHHHHHHHHh-cCCCCEEEEeChHHhc
Confidence 555444432111 1368999999999875
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=94.69 E-value=0.025 Score=52.10 Aligned_cols=40 Identities=13% Similarity=0.082 Sum_probs=29.3
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhc------CCeEEEEcccH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQ------SQRVIYTTPIK 110 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~------~~~vlvl~P~~ 110 (391)
.|..+++.||+|+|||......+...... +.+++|+.-..
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 35678999999999998876665554333 57888886543
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=94.62 E-value=0.094 Score=47.44 Aligned_cols=20 Identities=15% Similarity=0.124 Sum_probs=16.1
Q ss_pred CcEEEEecCCcchHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~ 92 (391)
+.+++.||+|+|||..+-..
T Consensus 37 ~~lLl~GppGtGKT~la~ai 56 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELV 56 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46889999999999875443
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=94.59 E-value=0.12 Score=46.20 Aligned_cols=41 Identities=20% Similarity=0.140 Sum_probs=28.0
Q ss_pred HhcCCcEEEEecCCcchHHHHHHHHHHHHhc----------CCeEEEEccc
Q psy6275 69 IENNQSVLVSAHTSAGKTVVAEYAIASSLKQ----------SQRVIYTTPI 109 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~~~~~~~~l~~----------~~~vlvl~P~ 109 (391)
+..|.-+++.||+|+|||+.....+...... +.+++++.-.
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e 77 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAE 77 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESS
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECC
Confidence 4578889999999999998765544432221 3567777543
|
| >1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* | Back alignment and structure |
|---|
Probab=94.33 E-value=0.079 Score=48.33 Aligned_cols=21 Identities=24% Similarity=0.271 Sum_probs=17.2
Q ss_pred CCcEEEEecCCcchHHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~ 92 (391)
..++++.||+|+|||..+...
T Consensus 38 ~~~vll~G~~GtGKT~la~~i 58 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVI 58 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHH
Confidence 368999999999999875443
|
| >1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=94.33 E-value=0.11 Score=47.15 Aligned_cols=20 Identities=20% Similarity=0.297 Sum_probs=16.3
Q ss_pred cEEEEecCCcchHHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~ 93 (391)
++++.||+|+|||..+....
T Consensus 44 ~~ll~G~~G~GKt~la~~l~ 63 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLA 63 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHH
Confidence 59999999999998754443
|
| >1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* | Back alignment and structure |
|---|
Probab=94.20 E-value=0.11 Score=48.34 Aligned_cols=19 Identities=32% Similarity=0.401 Sum_probs=15.6
Q ss_pred cEEEEecCCcchHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~ 92 (391)
.+++.||+|+|||..+...
T Consensus 40 ~~ll~G~~G~GKT~la~~l 58 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLL 58 (373)
T ss_dssp EEEEESCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4799999999999876443
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.19 E-value=0.084 Score=59.52 Aligned_cols=95 Identities=15% Similarity=0.126 Sum_probs=59.1
Q ss_pred HHHHhc------CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCC
Q psy6275 66 ILCIEN------NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPS 139 (391)
Q Consensus 66 i~~i~~------~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~ 139 (391)
+..++. ++++++.||+|+|||..+...+.....++.+++++.....+.... .+.+.-++.
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~---a~~~G~dl~----------- 1480 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY---ARKLGVDID----------- 1480 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHH---HHHTTCCTT-----------
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHH---HHHcCCCch-----------
Confidence 555554 789999999999999988777777777889999997664443332 222221110
Q ss_pred CCEEEEcH---HHHHHHHhcCccccCccceEEEecccccC
Q psy6275 140 SSCLIMTT---EILRNMLYRGSEITREVGWVIFDEIHYMR 176 (391)
Q Consensus 140 ~~I~v~Tp---~~l~~~l~~~~~~l~~~~~lViDE~h~~~ 176 (391)
.+.|..| +.+...+..... -..+++||+||++-+.
T Consensus 1481 -~l~v~~~~~~E~~l~~~~~lvr-~~~~~lVVIDsi~al~ 1518 (2050)
T 3cmu_A 1481 -NLLCSQPDTGEQALEICDALAR-SGAVDVIVVDSVAALT 1518 (2050)
T ss_dssp -TCEEECCSSHHHHHHHHHHHHH-HTCCSEEEESCGGGCC
T ss_pred -hceeecCChHHHHHHHHHHHHh-cCCCCEEEEcChhHhc
Confidence 1222222 444444432111 1368999999997543
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=93.99 E-value=0.36 Score=43.58 Aligned_cols=36 Identities=14% Similarity=0.107 Sum_probs=24.8
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEc
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTT 107 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~ 107 (391)
++.+.++|++|+|||+.....+......+++++++-
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~ 133 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 456778899999999876444333334577777764
|
| >1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A* | Back alignment and structure |
|---|
Probab=93.93 E-value=0.06 Score=51.65 Aligned_cols=44 Identities=20% Similarity=0.332 Sum_probs=35.6
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSN 114 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~ 114 (391)
...++++.|+||+|||......+.+.+..+..++|+=|..++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCchhH
Confidence 46789999999999999864445556667889999999988864
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* | Back alignment and structure |
|---|
Probab=93.72 E-value=0.12 Score=50.43 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=17.2
Q ss_pred CCcEEEEecCCcchHHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~ 92 (391)
...+++.||+|+|||..+-..
T Consensus 238 ~~~vLL~GppGtGKT~lArai 258 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIARAV 258 (489)
T ss_dssp CCEEEEECSTTSSHHHHHHHH
T ss_pred CCcEEEECcCCCCHHHHHHHH
Confidence 467999999999999876433
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=93.67 E-value=0.077 Score=46.15 Aligned_cols=51 Identities=22% Similarity=0.257 Sum_probs=35.8
Q ss_pred hcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHH
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFE 121 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~ 121 (391)
..|..+++.||+|+|||......+......+.+++++.-.. -..++...+.
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~-~~~~~~~~~~ 71 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE-HPVQVRQNMA 71 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS-CHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC-CHHHHHHHHH
Confidence 35678999999999999987666666666777888886432 2344444444
|
| >4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.66 E-value=0.49 Score=44.93 Aligned_cols=22 Identities=23% Similarity=0.372 Sum_probs=17.6
Q ss_pred CCcEEEEecCCcchHHHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~ 93 (391)
.+.+++.||+|+|||+.+-..+
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA 237 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVA 237 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHH
T ss_pred CCCCceECCCCchHHHHHHHHH
Confidence 3679999999999998754433
|
| >2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A | Back alignment and structure |
|---|
Probab=93.64 E-value=0.095 Score=50.47 Aligned_cols=20 Identities=20% Similarity=0.307 Sum_probs=16.7
Q ss_pred CCcEEEEecCCcchHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEY 91 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~ 91 (391)
.+.+++.||+|+|||..+-.
T Consensus 167 ~~~vLL~GppGtGKT~lA~a 186 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKA 186 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 36799999999999987543
|
| >2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=93.16 E-value=2.4 Score=38.52 Aligned_cols=35 Identities=17% Similarity=0.100 Sum_probs=24.4
Q ss_pred CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHH
Q psy6275 58 LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 58 ~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~ 93 (391)
-+.-+.+.+.. ...+.+++.||.|+|||.......
T Consensus 17 gR~~el~~L~~-l~~~~v~i~G~~G~GKT~L~~~~~ 51 (357)
T 2fna_A 17 DREKEIEKLKG-LRAPITLVLGLRRTGKSSIIKIGI 51 (357)
T ss_dssp CCHHHHHHHHH-TCSSEEEEEESTTSSHHHHHHHHH
T ss_pred ChHHHHHHHHH-hcCCcEEEECCCCCCHHHHHHHHH
Confidence 34555555555 444789999999999998754433
|
| >2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A | Back alignment and structure |
|---|
Probab=93.00 E-value=0.16 Score=45.91 Aligned_cols=20 Identities=30% Similarity=0.273 Sum_probs=16.3
Q ss_pred cEEEEecCCcchHHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~ 93 (391)
++++.||+|+|||..+....
T Consensus 40 ~~ll~G~~G~GKt~la~~l~ 59 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALA 59 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHH
Confidence 69999999999998754443
|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=92.92 E-value=0.42 Score=49.27 Aligned_cols=20 Identities=30% Similarity=0.273 Sum_probs=16.5
Q ss_pred cEEEEecCCcchHHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~ 93 (391)
++++.||||+|||..+-...
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala 542 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALA 542 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 59999999999998764443
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=92.90 E-value=0.12 Score=51.13 Aligned_cols=20 Identities=20% Similarity=0.320 Sum_probs=17.1
Q ss_pred cCCcEEEEecCCcchHHHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAE 90 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~ 90 (391)
.+..+++.||+|+|||+.+-
T Consensus 107 ~g~~vll~Gp~GtGKTtlar 126 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAK 126 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 36789999999999998754
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=92.84 E-value=0.11 Score=50.89 Aligned_cols=48 Identities=23% Similarity=0.234 Sum_probs=29.9
Q ss_pred CcHHHHHHHH-HHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEE
Q psy6275 58 LDPFQKEAIL-CIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYT 106 (391)
Q Consensus 58 ~~~~Q~~~i~-~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl 106 (391)
+++.+.+.+. .+..|.+++++||||||||+.. ..++..+....+++.+
T Consensus 245 ~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL-~aL~~~i~~~~giiti 293 (511)
T 2oap_1 245 VPSGVLAYLWLAIEHKFSAIVVGETASGKTTTL-NAIMMFIPPDAKVVSI 293 (511)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHHH-HHHGGGSCTTCCEEEE
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH-HHHHhhCCCCCCEEEE
Confidence 3344444444 3567889999999999999864 3344444444444444
|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
Probab=92.49 E-value=0.28 Score=51.29 Aligned_cols=23 Identities=17% Similarity=0.247 Sum_probs=18.0
Q ss_pred CCcEEEEecCCcchHHHHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIA 94 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~ 94 (391)
..+++++||+|+|||..+...+.
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~ 213 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQ 213 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999987644443
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=92.36 E-value=0.11 Score=48.98 Aligned_cols=42 Identities=26% Similarity=0.350 Sum_probs=34.2
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKAL 112 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L 112 (391)
.+.++++.||||+|||...-..+.+....+.+++++-|..+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPEREY 75 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESSCCS
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCCcCH
Confidence 567899999999999988766666666678899999887654
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=92.29 E-value=0.16 Score=46.37 Aligned_cols=33 Identities=18% Similarity=0.216 Sum_probs=22.4
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEE
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYT 106 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl 106 (391)
.+..+++.||+|+|||..+...+.. .+.+++|+
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~---~G~~VlyI 154 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA---LGGKDKYA 154 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH---HHTTSCCE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh---CCCCEEEE
Confidence 4566799999999999876555433 33444444
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=92.21 E-value=2.5 Score=38.67 Aligned_cols=124 Identities=12% Similarity=0.096 Sum_probs=61.3
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEc-cc-HHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHH-
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTT-PI-KALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTE- 148 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~-P~-~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~- 148 (391)
+.-+.+.||+|+|||+..-..+......++++++.. ++ +.-+.+....+.+.. .+.++...... .|.
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~-gv~~v~q~~~~---------~p~~ 198 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRI-GVKVIKHSYGA---------DPAA 198 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHT-TCEEECCCTTC---------CHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHc-CceEEeccccC---------CHHH
Confidence 456889999999999875433322334566666653 32 222333233333322 12222221111 121
Q ss_pred HHHHHHhcCccccCccceEEEecccccCc-cccchhHHHHHHHhCCCCcEEEEcccCCCh
Q psy6275 149 ILRNMLYRGSEITREVGWVIFDEIHYMRD-KERGYVWEETLILLSDNVRFVFLSATIPNA 207 (391)
Q Consensus 149 ~l~~~l~~~~~~l~~~~~lViDE~h~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~ 207 (391)
.+.+.+.... ....+++++|.+..... ...-..+..+...+..+..++.+.++....
T Consensus 199 ~v~e~l~~~~--~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~ 256 (328)
T 3e70_C 199 VAYDAIQHAK--ARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNA 256 (328)
T ss_dssp HHHHHHHHHH--HHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTH
T ss_pred HHHHHHHHHH--hccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHH
Confidence 1112111110 12567889999876431 122223334445555667788888887554
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=91.97 E-value=0.11 Score=45.20 Aligned_cols=52 Identities=21% Similarity=0.225 Sum_probs=34.1
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHH-hcCCeEEEEcccHHHHHHHHHHHHHh
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSL-KQSQRVIYTTPIKALSNQKYREFEEQ 123 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l-~~~~~vlvl~P~~~L~~q~~~~~~~~ 123 (391)
.|.-+++.|++|+|||...+..+.+.. ..+..++|+.-. .-..++..++...
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E-~~~~~~~~~~~~~ 81 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE-ERARDLRREMASF 81 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS-SCHHHHHHHHHTT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc-CCHHHHHHHHHHc
Confidence 467899999999999987765555543 446677777532 3344555555444
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=91.95 E-value=0.13 Score=45.73 Aligned_cols=37 Identities=22% Similarity=0.268 Sum_probs=24.6
Q ss_pred HhcCCcEEEEecCCcchHHHHHHHHHHHH-hc-CCeEEEE
Q psy6275 69 IENNQSVLVSAHTSAGKTVVAEYAIASSL-KQ-SQRVIYT 106 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~~~~~~~~l-~~-~~~vlvl 106 (391)
+..|+.+.++||||||||+..-..+ ..+ .. .+++++.
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~-g~~~~~~~G~I~~~ 60 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMI-DYINQTKSYHIITI 60 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHH-HHHHHHCCCEEEEE
T ss_pred hCCCCEEEEECCCCccHHHHHHHHH-HhCCCCCCCEEEEc
Confidence 4567889999999999998753322 222 22 4566554
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=91.88 E-value=0.22 Score=47.43 Aligned_cols=53 Identities=15% Similarity=0.248 Sum_probs=32.2
Q ss_pred CccCCCCCcHHHHHHHHHHh--cCCcEEEEecCCcchHHHHHHHHHHHHhc-CCeEEEE
Q psy6275 51 AREYPFVLDPFQKEAILCIE--NNQSVLVSAHTSAGKTVVAEYAIASSLKQ-SQRVIYT 106 (391)
Q Consensus 51 ~~~~~~~~~~~Q~~~i~~i~--~~~~~li~apTGsGKT~~~~~~~~~~l~~-~~~vlvl 106 (391)
+..+++ .+-+..++..+. .+..++++||||||||+.. ..++..+.. .++++++
T Consensus 146 l~~Lg~--~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL-~allg~l~~~~g~I~~~ 201 (418)
T 1p9r_A 146 LHSLGM--TAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTL-YAGLQELNSSERNILTV 201 (418)
T ss_dssp GGGSCC--CHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHH-HHHHHHHCCTTSCEEEE
T ss_pred HHHcCC--CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHhhcCCCCCEEEEe
Confidence 444444 444555665443 3556899999999999874 334444433 4556555
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=91.69 E-value=0.99 Score=43.65 Aligned_cols=20 Identities=25% Similarity=0.449 Sum_probs=16.5
Q ss_pred CcEEEEecCCcchHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~ 92 (391)
+.+++.||+|+|||+.+-..
T Consensus 50 ~gvLL~GppGtGKT~Larai 69 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAV 69 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 56999999999999876433
|
| >2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli} | Back alignment and structure |
|---|
Probab=91.67 E-value=0.28 Score=40.75 Aligned_cols=120 Identities=11% Similarity=-0.063 Sum_probs=72.2
Q ss_pred CcHHHHHHHHHHh--cCCcEEEEecCCcchHHHHHHHHHHHH-hcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCc
Q psy6275 58 LDPFQKEAILCIE--NNQSVLVSAHTSAGKTVVAEYAIASSL-KQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDV 134 (391)
Q Consensus 58 ~~~~Q~~~i~~i~--~~~~~li~apTGsGKT~~~~~~~~~~l-~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~ 134 (391)
..+-|..++..+. ..+-.++.++-|++|+...+..++..- .+|.+|.+++|+..-.....+......
T Consensus 35 ~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~~Gr~V~vLAp~~~s~~~l~~~~~l~~---------- 104 (189)
T 2l8b_A 35 RTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQGREVQIIAADRRSQMNMKQDERLSG---------- 104 (189)
T ss_dssp CHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHHTTCCEEEECSTTHHHHHHSCTTTCSS----------
T ss_pred cCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHhcCeEEEEEcCchHHHHHHHhhcCcCc----------
Confidence 4577899998774 345678899999999988544443332 468899999999887766543222111
Q ss_pred ccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHH-hCCCCcEEEEccc
Q psy6275 135 TINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLIL-LSDNVRFVFLSAT 203 (391)
Q Consensus 135 ~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~-~~~~~~~i~~SAT 203 (391)
+++ |- ..+......|..=+.+|+|||..|.. ..+..++.. ...+.|+|++--+
T Consensus 105 ------~t~--t~----~~ll~~~~~~tp~s~lIVD~AekLS~----kE~~~Lld~A~~~naqvvll~~~ 158 (189)
T 2l8b_A 105 ------ELI--TG----RRQLLEGMAFTPGSTVIVDQGEKLSL----KETLTLLDGAARHNVQVLITDSG 158 (189)
T ss_dssp ------CSS--ST----TTTTTTSCCCCCCCEEEEEESSSHHH----HHHHHHHHHHHHTTCCEEEEESS
T ss_pred ------cee--eh----hhhhcCCCCCCCCCEEEEechhhcCH----HHHHHHHHHHHhcCCEEEEeCCc
Confidence 000 00 00111122234455899999998742 223333332 3456888887555
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=91.59 E-value=0.24 Score=55.13 Aligned_cols=94 Identities=15% Similarity=0.129 Sum_probs=55.6
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEIL 150 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l 150 (391)
.+..+++.||+|+|||..++..+...+..+.+++|+.-...........+..-...+.+.. + .+.+.+
T Consensus 33 ~G~i~lI~G~pGsGKT~LAlqla~~~~~~G~~vlYI~te~~~~~l~~~~lg~dl~~i~i~~--------p----~t~e~l 100 (1706)
T 3cmw_A 33 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQ--------P----DTGEQA 100 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEEC--------C----SSHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhCCCceEEEEecCccHHHHHHhhccCccceeeec--------c----CcHHHH
Confidence 3678999999999999988777777777888999996544322222111110001111110 1 144444
Q ss_pred HHHHhcCccccCccceEEEecccccCc
Q psy6275 151 RNMLYRGSEITREVGWVIFDEIHYMRD 177 (391)
Q Consensus 151 ~~~l~~~~~~l~~~~~lViDE~h~~~~ 177 (391)
..++..-. .....++||||++..+..
T Consensus 101 ~~ll~~L~-~~~~~~LVVIDSLt~L~~ 126 (1706)
T 3cmw_A 101 LEICDALA-RSGAVDVIVVDSVAALTP 126 (1706)
T ss_dssp HHHHHHHH-HHTCCSEEEESCSTTCCC
T ss_pred HHHHHHHH-hccCCCEEEEcchhhhcc
Confidence 44333211 124689999999998743
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=91.47 E-value=0.19 Score=46.60 Aligned_cols=38 Identities=18% Similarity=0.163 Sum_probs=25.4
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHH---hc---CCeEEEEcc
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSL---KQ---SQRVIYTTP 108 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l---~~---~~~vlvl~P 108 (391)
.|.-+.+.||+|+|||......+.... .. +++++++.-
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~ 173 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDT 173 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEES
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeC
Confidence 356688999999999987655443321 11 367777754
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=91.32 E-value=1.6 Score=41.50 Aligned_cols=121 Identities=12% Similarity=0.073 Sum_probs=59.5
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEc--ccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTT--PIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEIL 150 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~--P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l 150 (391)
+.+.++|++|+|||+.....+......+.+++++. +.+..+.++...+.... .+.++..+.. ..|..+
T Consensus 99 ~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~-gv~v~~~~~~---------~~p~~i 168 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKV-GVPVLEVMDG---------ESPESI 168 (425)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHH-TCCEEECCTT---------CCHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccC-CccEEecCCC---------CCHHHH
Confidence 45778899999999876544444434577777765 44444433323332221 2333332211 134433
Q ss_pred H-HHHhcCccccCccceEEEecccccCcc-ccchhHHHHHHHhCCCCcEEEEcccCC
Q psy6275 151 R-NMLYRGSEITREVGWVIFDEIHYMRDK-ERGYVWEETLILLSDNVRFVFLSATIP 205 (391)
Q Consensus 151 ~-~~l~~~~~~l~~~~~lViDE~h~~~~~-~~~~~~~~i~~~~~~~~~~i~~SAT~~ 205 (391)
. ..+.... ...++++|+|=+-.+... ..-..+..+.....+..-++.+.|+-.
T Consensus 169 ~~~~l~~~~--~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg 223 (425)
T 2ffh_A 169 RRRVEEKAR--LEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG 223 (425)
T ss_dssp HHHHHHHHH--HTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT
T ss_pred HHHHHHHHH--HCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch
Confidence 2 2222110 147899999977654321 011112223333344444555666643
|
| >3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A | Back alignment and structure |
|---|
Probab=90.68 E-value=0.92 Score=43.95 Aligned_cols=52 Identities=12% Similarity=0.058 Sum_probs=41.9
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK 125 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~ 125 (391)
.+....+.|-||||||++....+.. .+..+||++|+...+.+++..++.+++
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a~l~~~---~~~p~lvv~~~~~~A~~l~~~l~~~~~ 64 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVAEIAER---HAGPVVLIAPDMQNALRLHDEISQFTD 64 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHHHHHHH---SSSCEEEEESSHHHHHHHHHHHHHTCS
T ss_pred CCCeEEEeCCCchHHHHHHHHHHHH---hCCCEEEEeCCHHHHHHHHHHHHhhCC
Confidence 4567899999999999874433322 356799999999999999999998875
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=90.52 E-value=0.49 Score=53.47 Aligned_cols=93 Identities=14% Similarity=0.130 Sum_probs=56.4
Q ss_pred hcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHH
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEI 149 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~ 149 (391)
..++++++.||+|+|||..+...+.+...++.+++|+. ..++.+++. ...+..++.-+. .. +++ +.+.
T Consensus 1079 ~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit-~ee~~~~L~--a~~~G~dl~~l~---~~--~pd----~~e~ 1146 (2050)
T 3cmu_A 1079 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID-AEHALDPIY--ARKLGVDIDNLL---CS--QPD----TGEQ 1146 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC-TTSCCCHHH--HHHTTCCTTTCE---EE--CCS----SHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-ccccHHHHH--HHHcCCChhHhe---ee--cCc----chHH
Confidence 35789999999999999998888888888899999885 444445554 223222221000 00 111 2232
Q ss_pred HHHHHhcCccccCccceEEEeccccc
Q psy6275 150 LRNMLYRGSEITREVGWVIFDEIHYM 175 (391)
Q Consensus 150 l~~~l~~~~~~l~~~~~lViDE~h~~ 175 (391)
.......- ......+++|+||+..+
T Consensus 1147 ~~~i~~~l-~~~~~~dlvVIDsl~~L 1171 (2050)
T 3cmu_A 1147 ALEICDAL-ARSGAVDVIVVDSVAAL 1171 (2050)
T ss_dssp HHHHHHHH-HHHTCCSEEEESCGGGC
T ss_pred HHHHHHHH-HHhCCCCEEEECCcccc
Confidence 22222111 11347899999998876
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=90.47 E-value=0.2 Score=47.02 Aligned_cols=37 Identities=19% Similarity=0.219 Sum_probs=24.8
Q ss_pred HhcCCcEEEEecCCcchHHHHHHHHHHHHh-c-CCeEEEE
Q psy6275 69 IENNQSVLVSAHTSAGKTVVAEYAIASSLK-Q-SQRVIYT 106 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~~~~~~~~l~-~-~~~vlvl 106 (391)
+..++.++++||||||||+..-.. ...+. . .++++++
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l-~~~~~~~~~g~I~~~ 171 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASM-IDYINQTKSYHIITI 171 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHH-HHHHHHHSCCEEEEE
T ss_pred hcCCCEEEEECCCCCCHHHHHHHH-HhhcCcCCCcEEEEe
Confidence 346778999999999999875333 23332 2 4666655
|
| >2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=89.80 E-value=0.35 Score=41.76 Aligned_cols=33 Identities=30% Similarity=0.342 Sum_probs=26.1
Q ss_pred cEEEEecCCcchHHHHHHHHHHHHhcCCeEEEE
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYT 106 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl 106 (391)
++++.++.|+|||...+-........+.+++++
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~ 40 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAG 40 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEE
Confidence 589999999999999776666666677777544
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=89.79 E-value=0.31 Score=45.32 Aligned_cols=36 Identities=22% Similarity=0.291 Sum_probs=23.3
Q ss_pred hcCCcEEEEecCCcchHHHHHHHHHHHHhc--CCeEEEE
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEYAIASSLKQ--SQRVIYT 106 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~~~~~~l~~--~~~vlvl 106 (391)
..+..++++||||||||+..- .++..+.. +.+++.+
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~-~l~g~~~~~~~~~i~t~ 158 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLA-AMLDYLNNTKYHHILTI 158 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHH-HHHHHHHHHCCCEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHH-HHHhcccCCCCcEEEEc
Confidence 456689999999999998743 33333332 4555444
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=89.75 E-value=0.21 Score=46.60 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=19.1
Q ss_pred HHhcCCcEEEEecCCcchHHHH
Q psy6275 68 CIENNQSVLVSAHTSAGKTVVA 89 (391)
Q Consensus 68 ~i~~~~~~li~apTGsGKT~~~ 89 (391)
.+..|+.++++||||||||+..
T Consensus 171 ~i~~G~~i~ivG~sGsGKSTll 192 (361)
T 2gza_A 171 AVQLERVIVVAGETGSGKTTLM 192 (361)
T ss_dssp HHHTTCCEEEEESSSSCHHHHH
T ss_pred HHhcCCEEEEECCCCCCHHHHH
Confidence 3568899999999999999864
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=89.09 E-value=0.37 Score=41.06 Aligned_cols=32 Identities=28% Similarity=0.213 Sum_probs=26.6
Q ss_pred cHHHHHHHHHHhcCCcEEEEecCCcchHHHHH
Q psy6275 59 DPFQKEAILCIENNQSVLVSAHTSAGKTVVAE 90 (391)
Q Consensus 59 ~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~ 90 (391)
+.-|..++..+..|+-+.+.||.|+|||+..-
T Consensus 9 ~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl~ 40 (208)
T 3b85_A 9 TLGQKHYVDAIDTNTIVFGLGPAGSGKTYLAM 40 (208)
T ss_dssp SHHHHHHHHHHHHCSEEEEECCTTSSTTHHHH
T ss_pred CHhHHHHHHhccCCCEEEEECCCCCCHHHHHH
Confidence 34566788888889999999999999998763
|
| >3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=89.07 E-value=0.3 Score=44.54 Aligned_cols=88 Identities=11% Similarity=0.077 Sum_probs=54.0
Q ss_pred cEEEEecCCcchHHHHHHHHHHHHhc--CCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcH---H
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASSLKQ--SQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTT---E 148 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~l~~--~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp---~ 148 (391)
.+++.||+|+|||...+..+...... +.+++|+....++... +++++.-+. .++++..| +
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~---ra~~lGvd~------------d~llv~~~~~~E 94 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA---YLRSMGVDP------------ERVIHTPVQSLE 94 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH---HHHHTTCCG------------GGEEEEECSBHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH---HHHHhCCCH------------HHeEEEcCCCHH
Confidence 57899999999999877776666655 7899999876655332 233332111 13444443 4
Q ss_pred HH-HHHHhcCc-cccCccceEEEecccccC
Q psy6275 149 IL-RNMLYRGS-EITREVGWVIFDEIHYMR 176 (391)
Q Consensus 149 ~l-~~~l~~~~-~~l~~~~~lViDE~h~~~ 176 (391)
.+ +..+..-. ..-..++++|+|=+..+.
T Consensus 95 ~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 95 QLRIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp HHHHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred HHHHHHHHHHHHhhccCceEEEEecccccc
Confidence 44 33322110 112368999999999874
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=89.00 E-value=0.36 Score=43.44 Aligned_cols=39 Identities=10% Similarity=0.145 Sum_probs=27.8
Q ss_pred HhcCCcEEEEecCCcchHHHHHHHHHHHHhc-CCeEEEEc
Q psy6275 69 IENNQSVLVSAHTSAGKTVVAEYAIASSLKQ-SQRVIYTT 107 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~~~~~~~~l~~-~~~vlvl~ 107 (391)
+..|.-+++.||+|+|||+.....+...... +.+++++.
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 3567889999999999998765544444334 44777774
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=88.65 E-value=0.42 Score=43.41 Aligned_cols=35 Identities=14% Similarity=0.196 Sum_probs=24.1
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEc
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTT 107 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~ 107 (391)
+-++++|++|+|||+.....+......+.+++++.
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~ 139 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA 139 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc
Confidence 45789999999999876444333334567777664
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=88.60 E-value=0.28 Score=40.61 Aligned_cols=20 Identities=5% Similarity=0.252 Sum_probs=16.9
Q ss_pred cCCcEEEEecCCcchHHHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAE 90 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~ 90 (391)
.|+-++++||+|+|||+..-
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~ 23 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKN 23 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 56778999999999998753
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=88.37 E-value=0.51 Score=42.84 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=24.8
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEc
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTT 107 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~ 107 (391)
.++.+.+.||+|+|||+..-..+...-..++++++..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g 137 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCA 137 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 3567889999999999875433322224466777664
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=88.29 E-value=0.62 Score=51.93 Aligned_cols=89 Identities=16% Similarity=0.156 Sum_probs=60.9
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcH---H
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTT---E 148 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp---~ 148 (391)
|+.+.+.||.|||||+.++..+.+.-+.+..++++.+-.+|.... ++.+.-++ .++++.-| +
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~---~~~~Gv~~------------~~l~~~~p~~~e 1495 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY---ARKLGVDI------------DNLLCSQPDTGE 1495 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHH---HHHTTCCG------------GGCEEECCSSHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHH---HHHcCCCH------------HHeEEeCCCcHH
Confidence 467899999999999998888877878899999999988886665 33332111 12556655 4
Q ss_pred HHHHHHhcCccccCccceEEEecccccC
Q psy6275 149 ILRNMLYRGSEITREVGWVIFDEIHYMR 176 (391)
Q Consensus 149 ~l~~~l~~~~~~l~~~~~lViDE~h~~~ 176 (391)
..+..+..... -..+++||+|.+-.+.
T Consensus 1496 ~~l~~~~~~~~-s~~~~~vvvDsv~al~ 1522 (1706)
T 3cmw_A 1496 QALEICDALAR-SGAVDVIVVDSVAALT 1522 (1706)
T ss_dssp HHHHHHHHHHH-HTCCSEEEESCSTTCC
T ss_pred HHHHHHHHHHH-cCCCCEEEEccHHhCC
Confidence 43333322111 1268899999998764
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=88.29 E-value=0.51 Score=39.04 Aligned_cols=36 Identities=22% Similarity=0.177 Sum_probs=24.2
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEE
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYT 106 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl 106 (391)
.+..+++.|++|||||+..-...-..-..+.++.++
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~ 47 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVL 47 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 456789999999999997644433332345566555
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=88.13 E-value=0.29 Score=41.25 Aligned_cols=20 Identities=25% Similarity=0.458 Sum_probs=15.9
Q ss_pred cCCcEEEEecCCcchHHHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAE 90 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~ 90 (391)
.|+-+.++||+|+|||+..-
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~ 22 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLK 22 (198)
T ss_dssp --CCEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 57789999999999998753
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=88.11 E-value=0.3 Score=41.04 Aligned_cols=25 Identities=16% Similarity=0.193 Sum_probs=18.9
Q ss_pred HhcCCcEEEEecCCcchHHHHHHHH
Q psy6275 69 IENNQSVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~~~~~ 93 (391)
+..++.+++.|++|||||+..-...
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~La 46 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAFA 46 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHH
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHH
Confidence 3467889999999999999864433
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=88.00 E-value=0.24 Score=45.56 Aligned_cols=21 Identities=33% Similarity=0.433 Sum_probs=18.3
Q ss_pred HhcCCcEEEEecCCcchHHHH
Q psy6275 69 IENNQSVLVSAHTSAGKTVVA 89 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~ 89 (391)
+..|+.+.++||||||||+..
T Consensus 168 i~~g~~v~i~G~~GsGKTTll 188 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTYI 188 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHH
Confidence 467899999999999999853
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=87.74 E-value=0.52 Score=42.72 Aligned_cols=36 Identities=11% Similarity=0.174 Sum_probs=24.3
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEc
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTT 107 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~ 107 (391)
+.-+.+.||+|+|||+..-..+-..-..++++++..
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g 135 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 135 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 456789999999999876433322224567777764
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=87.55 E-value=0.51 Score=40.70 Aligned_cols=38 Identities=11% Similarity=0.126 Sum_probs=26.9
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHh------cCCeEEEEcc
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLK------QSQRVIYTTP 108 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~------~~~~vlvl~P 108 (391)
.|..+.+.||+|+|||+.....+...+. .+..++++.-
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~ 66 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDT 66 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEEC
Confidence 4678999999999999887655544322 2467777753
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=87.30 E-value=0.34 Score=40.64 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=17.6
Q ss_pred HhcCCcEEEEecCCcchHHHHH
Q psy6275 69 IENNQSVLVSAHTSAGKTVVAE 90 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~~ 90 (391)
+..|+-+.+.||+|||||+..-
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~ 25 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVR 25 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHH
T ss_pred CCCCcEEEEECcCCCCHHHHHH
Confidence 3467788999999999998753
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=87.27 E-value=0.36 Score=40.95 Aligned_cols=20 Identities=25% Similarity=0.375 Sum_probs=16.9
Q ss_pred cCCcEEEEecCCcchHHHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAE 90 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~ 90 (391)
.|+-++++||+|+|||+..-
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~ 26 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVRE 26 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHH
Confidence 46778999999999998753
|
| >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* | Back alignment and structure |
|---|
Probab=87.26 E-value=0.81 Score=47.21 Aligned_cols=18 Identities=28% Similarity=0.545 Sum_probs=15.8
Q ss_pred CcEEEEecCCcchHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAE 90 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~ 90 (391)
+.+++.||+|+|||+.+-
T Consensus 239 ~GILL~GPPGTGKT~LAr 256 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIAR 256 (806)
T ss_dssp CEEEEECCTTSCHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 579999999999998753
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=87.19 E-value=0.57 Score=42.84 Aligned_cols=36 Identities=11% Similarity=0.081 Sum_probs=24.8
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEc
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTT 107 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~ 107 (391)
++-+.++|++|+|||+.....+......+++++++.
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid 140 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAA 140 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 345789999999999876444333334577777764
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=86.85 E-value=0.3 Score=40.00 Aligned_cols=20 Identities=20% Similarity=0.426 Sum_probs=16.6
Q ss_pred CCcEEEEecCCcchHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEY 91 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~ 91 (391)
++.++++|++|||||++.-.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~ 22 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRC 22 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 56789999999999987543
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=86.62 E-value=0.34 Score=40.95 Aligned_cols=22 Identities=14% Similarity=0.299 Sum_probs=18.5
Q ss_pred HhcCCcEEEEecCCcchHHHHH
Q psy6275 69 IENNQSVLVSAHTSAGKTVVAE 90 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~~ 90 (391)
+..++.++++||+|||||+..-
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~ 30 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIK 30 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHHH
Confidence 4567889999999999998643
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=86.62 E-value=0.6 Score=42.04 Aligned_cols=34 Identities=26% Similarity=0.261 Sum_probs=21.7
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEE
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYT 106 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl 106 (391)
.++++.||+|+|||..+-...-.....+..++++
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~ 81 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRI 81 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEe
Confidence 4799999999999987644433332223334444
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=86.60 E-value=0.4 Score=40.28 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=17.8
Q ss_pred HhcCCcEEEEecCCcchHHHHH
Q psy6275 69 IENNQSVLVSAHTSAGKTVVAE 90 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~~ 90 (391)
+..|..+.+.||+|||||+..-
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~ 24 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRK 24 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHH
Confidence 3467789999999999998753
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=86.59 E-value=0.45 Score=38.69 Aligned_cols=21 Identities=14% Similarity=0.401 Sum_probs=17.2
Q ss_pred cCCcEEEEecCCcchHHHHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEY 91 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~ 91 (391)
.+..+.+.||+|||||+..-.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~ 23 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQ 23 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 356799999999999987533
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.59 E-value=0.67 Score=44.22 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=17.6
Q ss_pred CCcEEEEecCCcchHHHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~ 93 (391)
.+.+++.||+|+|||+.+-..+
T Consensus 215 prGvLLyGPPGTGKTllAkAiA 236 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACA 236 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHH
Confidence 4679999999999998754433
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=86.54 E-value=0.34 Score=44.58 Aligned_cols=21 Identities=14% Similarity=0.208 Sum_probs=16.8
Q ss_pred CCcEEEEecCCcchHHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~ 92 (391)
++.++|+||||+|||......
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~L 60 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDL 60 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 357899999999999875443
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=86.43 E-value=0.51 Score=38.88 Aligned_cols=22 Identities=23% Similarity=0.206 Sum_probs=17.8
Q ss_pred CCcEEEEecCCcchHHHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~ 93 (391)
.+.+++.|++|||||+..-...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 5679999999999999764443
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=86.35 E-value=1.2 Score=36.62 Aligned_cols=38 Identities=16% Similarity=0.066 Sum_probs=23.4
Q ss_pred cEEEEecCCcchHHHHHHHHHHHHh-cCCeEEEEcccHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASSLK-QSQRVIYTTPIKALS 113 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~l~-~~~~vlvl~P~~~L~ 113 (391)
.+++.|++|||||+..-... +.+. .+..+.++ |.-++.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~-~~l~~~g~~~~~~-~~~~~~ 41 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVK-EILDNQGINNKII-NYGDFM 41 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHH-HHHHTTTCCEEEE-EHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH-HHHHhcCceEEEE-ECChHH
Confidence 47899999999998764433 2333 33445555 544443
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=86.30 E-value=0.3 Score=40.58 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=18.0
Q ss_pred HhcCCcEEEEecCCcchHHHHH
Q psy6275 69 IENNQSVLVSAHTSAGKTVVAE 90 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~~ 90 (391)
+..|+.+++.||+|||||+..-
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~ 27 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAE 27 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHH
Confidence 3457789999999999998753
|
| >2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=85.96 E-value=0.49 Score=43.20 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=19.8
Q ss_pred HHHhcCCcEEEEecCCcchHHHHH
Q psy6275 67 LCIENNQSVLVSAHTSAGKTVVAE 90 (391)
Q Consensus 67 ~~i~~~~~~li~apTGsGKT~~~~ 90 (391)
..+..++++++.||+|+|||..+-
T Consensus 41 ~~l~~~~~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 41 IGICTGGHILLEGVPGLAKTLSVN 64 (331)
T ss_dssp HHHHHTCCEEEESCCCHHHHHHHH
T ss_pred HHHHcCCeEEEECCCCCcHHHHHH
Confidence 345668899999999999998754
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.94 E-value=0.76 Score=43.90 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=17.7
Q ss_pred CCcEEEEecCCcchHHHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~ 93 (391)
.+.+++.||+|+|||+.+-..+
T Consensus 215 prGvLL~GPPGtGKTllAkAiA 236 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVA 236 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHH
Confidence 3779999999999998754433
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=85.73 E-value=0.74 Score=42.78 Aligned_cols=36 Identities=11% Similarity=0.174 Sum_probs=24.1
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEc
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTT 107 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~ 107 (391)
+.-+.+.||+|+|||+..-..+-..-..++++++..
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g 192 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 192 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEec
Confidence 345789999999999876433322223567777764
|
| >3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli} | Back alignment and structure |
|---|
Probab=85.51 E-value=0.48 Score=46.21 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=21.4
Q ss_pred HHHHHHhcCCcEEEEecCCcchHHHHH
Q psy6275 64 EAILCIENNQSVLVSAHTSAGKTVVAE 90 (391)
Q Consensus 64 ~~i~~i~~~~~~li~apTGsGKT~~~~ 90 (391)
.+...+..+.++++.||+|+|||..+-
T Consensus 33 ~l~~al~~~~~VLL~GpPGtGKT~LAr 59 (500)
T 3nbx_X 33 LCLLAALSGESVFLLGPPGIAKSLIAR 59 (500)
T ss_dssp HHHHHHHHTCEEEEECCSSSSHHHHHH
T ss_pred HHHHHHhcCCeeEeecCchHHHHHHHH
Confidence 334455778999999999999998753
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=85.44 E-value=0.44 Score=40.29 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=17.1
Q ss_pred cCCcEEEEecCCcchHHHHHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~ 92 (391)
.++-+++.||||+|||..++..
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~L 54 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALEL 54 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 3566899999999999765433
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=85.40 E-value=0.42 Score=43.48 Aligned_cols=21 Identities=24% Similarity=0.257 Sum_probs=16.4
Q ss_pred CCcEEEEecCCcchHHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~ 92 (391)
+.-++++||||+|||..+...
T Consensus 3 ~~~i~i~GptgsGKt~la~~L 23 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVML 23 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHH
Confidence 345789999999999875444
|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A | Back alignment and structure |
|---|
Probab=85.40 E-value=0.9 Score=42.12 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=17.9
Q ss_pred cCCcEEEEecCCcchHHHHHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~ 92 (391)
.+.++++.||+|+|||..+-..
T Consensus 50 ~~~~vll~GppGtGKT~la~~i 71 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETL 71 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHH
Confidence 4578999999999999975433
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=85.39 E-value=0.63 Score=42.94 Aligned_cols=39 Identities=10% Similarity=0.088 Sum_probs=28.5
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHh------cCCeEEEEcccH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLK------QSQRVIYTTPIK 110 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~------~~~~vlvl~P~~ 110 (391)
|..+++.||+|+|||......+..... .+.+++|+.-..
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 456899999999999877665555332 367888886544
|
| >3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B* | Back alignment and structure |
|---|
Probab=85.39 E-value=1.8 Score=46.95 Aligned_cols=67 Identities=13% Similarity=0.152 Sum_probs=41.2
Q ss_pred EEEEecCCcchHHHHHHHHHHHHhc---CCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHHH
Q psy6275 75 VLVSAHTSAGKTVVAEYAIASSLKQ---SQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILR 151 (391)
Q Consensus 75 ~li~apTGsGKT~~~~~~~~~~l~~---~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l~ 151 (391)
-+|.|+.|||||.+.+.-+...+.. +.+++++||... .-++..++....+ . ....++.|+|-..+.
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q~-TFt~~~rl~~~l~-------~---~~~~~~~V~TFhsla 72 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQM-TFLMEYELAKTPD-------M---GGMIRAQVFSFSRLA 72 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGGG-HHHHHHHHTCCSS-------C---SEESSEEEECHHHHH
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCcc-cHHHHHHHHHhhh-------h---cceeeeEEecHHHHH
Confidence 3789999999999877666555543 478999999773 3333333333221 1 011356677766654
Q ss_pred H
Q psy6275 152 N 152 (391)
Q Consensus 152 ~ 152 (391)
.
T Consensus 73 ~ 73 (1166)
T 3u4q_B 73 W 73 (1166)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=85.36 E-value=1 Score=36.90 Aligned_cols=33 Identities=21% Similarity=0.131 Sum_probs=21.6
Q ss_pred cEEEEecCCcchHHHHHHHHHHHH-hcCCeEEEEc
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASSL-KQSQRVIYTT 107 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~l-~~~~~vlvl~ 107 (391)
-+.++|++|||||+..... +..+ ..+.++.++.
T Consensus 6 ~i~i~G~sGsGKTTl~~~L-~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKW-VAAAVREGWRVGTVK 39 (169)
T ss_dssp EEEEECCTTSSHHHHHHHH-HHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHH-HHhhHhcCCeeeEEE
Confidence 4779999999999865333 3333 3455665554
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=85.35 E-value=0.54 Score=39.69 Aligned_cols=21 Identities=5% Similarity=0.368 Sum_probs=17.5
Q ss_pred hcCCcEEEEecCCcchHHHHH
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAE 90 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~ 90 (391)
..++-++++||+|+|||...-
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~ 37 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKN 37 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHHH
Confidence 367889999999999998643
|
| >4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* | Back alignment and structure |
|---|
Probab=85.31 E-value=2.3 Score=42.64 Aligned_cols=71 Identities=14% Similarity=0.112 Sum_probs=37.8
Q ss_pred HHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCC-----ChHHHHHHHHHHHHHhhhcchhhccCcchHhHHHHHHh
Q psy6275 297 KIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFN-----ETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRR 371 (391)
Q Consensus 297 ~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~-----~~~~r~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~ 371 (391)
.+.+.+...+ +.++||++|....+.+++.|...+.. ...++..+.+.|++.-.+|.++.. -.+..
T Consensus 439 ~i~~l~~~~~-g~~lvlF~Sy~~l~~v~~~l~~~~~~~~q~~~~~~~~~ll~~f~~~~~vL~~v~~---------gsf~E 508 (620)
T 4a15_A 439 VIEDIILKVK-KNTIVYFPSYSLMDRVENRVSFEHMKEYRGIDQKELYSMLKKFRRDHGTIFAVSG---------GRLSE 508 (620)
T ss_dssp HHHHHHHHHC-SCEEEEESCHHHHHHHTSSCCSCCEECCTTCCSHHHHHHHHHHTTSCCEEEEETT---------SCC--
T ss_pred HHHHHHHhCC-CCEEEEeCCHHHHHHHHHHHHhcchhccCCCChhHHHHHHHHhccCCcEEEEEec---------Cceec
Confidence 3444444444 47999999999999999988622111 123566777777633344444311 14678
Q ss_pred hhhhcc
Q psy6275 372 GIGIHH 377 (391)
Q Consensus 372 GI~~~h 377 (391)
|||+..
T Consensus 509 GiD~~g 514 (620)
T 4a15_A 509 GINFPG 514 (620)
T ss_dssp ------
T ss_pred cccCCC
Confidence 999976
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=85.08 E-value=0.57 Score=40.09 Aligned_cols=22 Identities=14% Similarity=0.338 Sum_probs=17.6
Q ss_pred HhcCCcEEEEecCCcchHHHHH
Q psy6275 69 IENNQSVLVSAHTSAGKTVVAE 90 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~~ 90 (391)
+..|+-+.+.||+|+|||+..-
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~ 41 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIK 41 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHH
Confidence 4678889999999999998753
|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=84.99 E-value=6.3 Score=31.53 Aligned_cols=80 Identities=18% Similarity=0.113 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCccc-----------CCCCCEEEEcHHHHHHH
Q psy6275 85 KTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTI-----------NPSSSCLIMTTEILRNM 153 (391)
Q Consensus 85 KT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~-----------~~~~~I~v~Tp~~l~~~ 153 (391)
|... +..++... .+.++||.++++.-+..++..+....-.+..++|+.+. ....+|+|+|.
T Consensus 17 K~~~-l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------ 88 (165)
T 1fuk_A 17 KYEC-LTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD------ 88 (165)
T ss_dssp HHHH-HHHHHHHT-TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG------
T ss_pred HHHH-HHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC------
Confidence 6544 33344432 46789999999999999999998876678888887652 34568999984
Q ss_pred HhcCccccCccceEEEecc
Q psy6275 154 LYRGSEITREVGWVIFDEI 172 (391)
Q Consensus 154 l~~~~~~l~~~~~lViDE~ 172 (391)
.......+..++++|.-+.
T Consensus 89 ~~~~G~d~~~~~~Vi~~~~ 107 (165)
T 1fuk_A 89 LLARGIDVQQVSLVINYDL 107 (165)
T ss_dssp GGTTTCCCCSCSEEEESSC
T ss_pred hhhcCCCcccCCEEEEeCC
Confidence 2233345667888776443
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=84.99 E-value=0.39 Score=38.86 Aligned_cols=19 Identities=21% Similarity=0.412 Sum_probs=15.6
Q ss_pred cEEEEecCCcchHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~ 92 (391)
.+++.|++|||||+..-..
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999976443
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.81 E-value=0.96 Score=43.07 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=17.3
Q ss_pred CCcEEEEecCCcchHHHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~ 93 (391)
.+.+++.||+|+|||+.+-..+
T Consensus 206 prGiLL~GPPGtGKT~lakAiA 227 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVA 227 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 3569999999999998754433
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=84.78 E-value=1 Score=40.38 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=17.5
Q ss_pred CCcEEEEecCCcchHHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~ 92 (391)
..++++.||+|+|||..+-..
T Consensus 50 ~~~vll~G~~GtGKT~la~~l 70 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRL 70 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 578999999999999876433
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=84.76 E-value=0.62 Score=38.21 Aligned_cols=23 Identities=17% Similarity=0.231 Sum_probs=18.6
Q ss_pred hcCCcEEEEecCCcchHHHHHHH
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~~ 92 (391)
..++.+++.|++|||||+..-..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l 31 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKEL 31 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHH
Confidence 35678999999999999976443
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=84.56 E-value=0.45 Score=39.26 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=17.1
Q ss_pred CCcEEEEecCCcchHHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~ 92 (391)
+..+++.|++|||||+..-..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L 23 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLA 23 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 567899999999999875433
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=84.56 E-value=0.54 Score=42.63 Aligned_cols=36 Identities=14% Similarity=0.194 Sum_probs=24.8
Q ss_pred hcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcc
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTP 108 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P 108 (391)
..|+.+.++||+|+|||+..-+.+ ..+ .++++..+|
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~-gl~--~G~I~~~v~ 159 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLI-HFL--GGSVLSFAN 159 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHH-HHH--TCEEECGGG
T ss_pred cCCCEEEEECCCCCcHHHHHHHHh-hhc--CceEEEEec
Confidence 568889999999999998653322 222 567765444
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=84.53 E-value=0.39 Score=39.34 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=17.7
Q ss_pred hcCCcEEEEecCCcchHHHHHH
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEY 91 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~ 91 (391)
..|+-+.+.||+|||||+.+-.
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHH
Confidence 3566789999999999987643
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=84.51 E-value=0.61 Score=38.60 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=17.9
Q ss_pred cCCcEEEEecCCcchHHHHHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~ 92 (391)
.+..++++|++|||||++.-..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~L 30 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMI 30 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4678999999999999975433
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=84.42 E-value=0.61 Score=40.05 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=17.7
Q ss_pred HHhcCCcEEEEecCCcchHHHHH
Q psy6275 68 CIENNQSVLVSAHTSAGKTVVAE 90 (391)
Q Consensus 68 ~i~~~~~~li~apTGsGKT~~~~ 90 (391)
.+..|+-++++||+|+|||+..-
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk 34 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQ 34 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHH
T ss_pred cCCCCcEEEEECCCCCCHHHHHH
Confidence 45678889999999999998753
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=84.31 E-value=1.1 Score=37.59 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=18.0
Q ss_pred hcCCcEEEEecCCcchHHHHHH
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEY 91 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~ 91 (391)
..+..+.+.||+|||||+..-.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~ 44 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACA 44 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHH
Confidence 4577889999999999987643
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=84.08 E-value=0.76 Score=43.89 Aligned_cols=35 Identities=17% Similarity=0.152 Sum_probs=25.7
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEc
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTT 107 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~ 107 (391)
..++++|++|+|||+.....+......+.+++++.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~ 134 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIA 134 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 36889999999999876554444445577787775
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=84.05 E-value=0.45 Score=39.20 Aligned_cols=22 Identities=27% Similarity=0.234 Sum_probs=17.7
Q ss_pred cCCcEEEEecCCcchHHHHHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~ 92 (391)
.+..+++.|++|||||+..-..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~L 24 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRL 24 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4567899999999999976443
|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.04 E-value=3.6 Score=33.93 Aligned_cols=81 Identities=14% Similarity=0.006 Sum_probs=49.3
Q ss_pred CcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccC-----------CCCCEEEEcHHHH
Q psy6275 82 SAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTIN-----------PSSSCLIMTTEIL 150 (391)
Q Consensus 82 GsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~-----------~~~~I~v~Tp~~l 150 (391)
.+.|-.. +.-++.....+.++||.++++.-+..++..+....-.+..++|+.+.. ...+|+|+|.- +
T Consensus 29 ~~~K~~~-L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~-~ 106 (185)
T 2jgn_A 29 ESDKRSF-LLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAV-A 106 (185)
T ss_dssp GGGHHHH-HHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSSEEEEEC---
T ss_pred cHHHHHH-HHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcCh-h
Confidence 4566543 344444444578999999999999999999988766788888876532 24578888831 1
Q ss_pred HHHHhcCccccCccceEEE
Q psy6275 151 RNMLYRGSEITREVGWVIF 169 (391)
Q Consensus 151 ~~~l~~~~~~l~~~~~lVi 169 (391)
.....+..++++|.
T Consensus 107 -----~~Gldi~~~~~VI~ 120 (185)
T 2jgn_A 107 -----ARGLDISNVKHVIN 120 (185)
T ss_dssp ---------CCCSBSEEEE
T ss_pred -----hcCCCcccCCEEEE
Confidence 22234566777765
|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=83.98 E-value=11 Score=29.96 Aligned_cols=81 Identities=15% Similarity=0.074 Sum_probs=55.7
Q ss_pred cchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCccc-----------CCCCCEEEEcHHHHH
Q psy6275 83 AGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTI-----------NPSSSCLIMTTEILR 151 (391)
Q Consensus 83 sGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~-----------~~~~~I~v~Tp~~l~ 151 (391)
..|-.. +.-++.. ..+.++||.++++..+..+...+....-.+..++|+... +...+|+|+|.
T Consensus 20 ~~K~~~-L~~ll~~-~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~---- 93 (163)
T 2hjv_A 20 ENKFSL-LKDVLMT-ENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD---- 93 (163)
T ss_dssp GGHHHH-HHHHHHH-HCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG----
T ss_pred HHHHHH-HHHHHHh-cCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC----
Confidence 455443 3333333 356789999999999999999998876688888987652 34567999984
Q ss_pred HHHhcCccccCccceEEEec
Q psy6275 152 NMLYRGSEITREVGWVIFDE 171 (391)
Q Consensus 152 ~~l~~~~~~l~~~~~lViDE 171 (391)
.......+..++++|.-+
T Consensus 94 --~~~~Gld~~~~~~Vi~~~ 111 (163)
T 2hjv_A 94 --VAARGIDIENISLVINYD 111 (163)
T ss_dssp --GGTTTCCCSCCSEEEESS
T ss_pred --hhhcCCchhcCCEEEEeC
Confidence 223344566788877644
|
| >1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A | Back alignment and structure |
|---|
Probab=83.98 E-value=0.49 Score=39.30 Aligned_cols=34 Identities=29% Similarity=0.461 Sum_probs=23.6
Q ss_pred EEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHH
Q psy6275 75 VLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKAL 112 (391)
Q Consensus 75 ~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L 112 (391)
+++.|++|||||..+...+.. +.+++|++.....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~----~~~~~yiaT~~~~ 35 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD----APQVLYIATSQIL 35 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS----CSSEEEEECCCC-
T ss_pred EEEECCCCCcHHHHHHHHHhc----CCCeEEEecCCCC
Confidence 689999999999765543322 5578888775543
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=83.92 E-value=0.9 Score=38.67 Aligned_cols=40 Identities=20% Similarity=0.108 Sum_probs=26.1
Q ss_pred hcCCcEEEEecCCcchHHHHHHHHHHHHh------cCCeEEEEccc
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEYAIASSLK------QSQRVIYTTPI 109 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~~~~~~l~------~~~~vlvl~P~ 109 (391)
..|+-+.+.||+|+|||+.....+..... .+..++++...
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~ 68 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTE 68 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECC
Confidence 35677899999999999876444332222 14567776543
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=83.74 E-value=0.84 Score=44.48 Aligned_cols=39 Identities=5% Similarity=0.008 Sum_probs=30.6
Q ss_pred hcCCcEEEEecCCcchHHHHHHHHHHHHhc-CCeEEEEcc
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEYAIASSLKQ-SQRVIYTTP 108 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~~~~~~l~~-~~~vlvl~P 108 (391)
..|.-+++.|++|+|||...+..+.+...+ +.+++|+.-
T Consensus 240 ~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp CTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred CCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 346779999999999999877777676655 678888854
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=83.74 E-value=1.2 Score=38.77 Aligned_cols=20 Identities=30% Similarity=0.448 Sum_probs=16.6
Q ss_pred CCcEEEEecCCcchHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEY 91 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~ 91 (391)
.+.+++.||+|+|||..+-.
T Consensus 45 ~~~vll~G~~GtGKT~la~~ 64 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKA 64 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHH
Confidence 45799999999999987543
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=83.73 E-value=1.2 Score=37.34 Aligned_cols=35 Identities=17% Similarity=0.103 Sum_probs=21.2
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEE
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYT 106 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl 106 (391)
+.-+.+.|++|||||+..-...-..-..++.+.++
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~ 56 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVF 56 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEe
Confidence 34578999999999987533322211234555444
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=83.71 E-value=0.66 Score=42.08 Aligned_cols=20 Identities=25% Similarity=0.307 Sum_probs=15.9
Q ss_pred cEEEEecCCcchHHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~ 93 (391)
-++++||||+|||..+...+
T Consensus 12 ~i~i~GptgsGKt~la~~La 31 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELR 31 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHH
Confidence 47899999999998764443
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=83.57 E-value=0.7 Score=39.04 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=17.4
Q ss_pred HHhcCCcEEEEecCCcchHHHH
Q psy6275 68 CIENNQSVLVSAHTSAGKTVVA 89 (391)
Q Consensus 68 ~i~~~~~~li~apTGsGKT~~~ 89 (391)
.+..|+-+.+.||+|+|||+..
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHH
Confidence 5678889999999999999875
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=83.52 E-value=0.72 Score=40.48 Aligned_cols=19 Identities=32% Similarity=0.219 Sum_probs=15.2
Q ss_pred cEEEEecCCcchHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~ 92 (391)
.++++||||||||+.+...
T Consensus 3 li~I~G~~GSGKSTla~~L 21 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQI 21 (253)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHH
Confidence 4789999999999875433
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=83.50 E-value=0.54 Score=39.28 Aligned_cols=17 Identities=18% Similarity=0.509 Sum_probs=14.6
Q ss_pred CcEEEEecCCcchHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVA 89 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~ 89 (391)
+-++++||+|+|||...
T Consensus 2 RpIVi~GPSG~GK~Tl~ 18 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 56899999999999863
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=83.45 E-value=0.65 Score=41.92 Aligned_cols=21 Identities=29% Similarity=0.401 Sum_probs=17.4
Q ss_pred cCCcEEEEecCCcchHHHHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEY 91 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~ 91 (391)
.++.+++.||+|+|||+.+-.
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~a 68 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKA 68 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHH
Confidence 357799999999999987543
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=83.43 E-value=1.3 Score=36.28 Aligned_cols=21 Identities=29% Similarity=0.340 Sum_probs=17.1
Q ss_pred cCCcEEEEecCCcchHHHHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEY 91 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~ 91 (391)
.|..+++.|+.|||||+..-.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~ 24 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMA 24 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 466788999999999987533
|
| >2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=83.39 E-value=0.5 Score=39.97 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=16.7
Q ss_pred cEEEEecCCcchHHHHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIAS 95 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~ 95 (391)
-.+++|++|||||..+..-+..
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4689999999999976444333
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=83.27 E-value=0.92 Score=41.29 Aligned_cols=97 Identities=8% Similarity=0.085 Sum_probs=51.0
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHH-Hh-----------cC----CeEEEEcccHHH-HHHHHHHHHHhcccceeeeCCc
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASS-LK-----------QS----QRVIYTTPIKAL-SNQKYREFEEQFKDVGLITGDV 134 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~-l~-----------~~----~~vlvl~P~~~L-~~q~~~~~~~~~~~v~~~~g~~ 134 (391)
|..+++.||+|+|||...+..+... +. .+ .+++|+.-...+ ..++...++.+.-...-+.
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~~--- 174 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVL--- 174 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHHH---
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHHh---
Confidence 4678999999999998776555542 21 23 688888654432 3444444433321110000
Q ss_pred ccCCCCCEEEE---cHHHHHHHHhcCc---cccCccceEEEecccccC
Q psy6275 135 TINPSSSCLIM---TTEILRNMLYRGS---EITREVGWVIFDEIHYMR 176 (391)
Q Consensus 135 ~~~~~~~I~v~---Tp~~l~~~l~~~~---~~l~~~~~lViDE~h~~~ 176 (391)
.++.+. +.+.+..++..-. .....+++||||.+..+.
T Consensus 175 -----~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~ 217 (322)
T 2i1q_A 175 -----DNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTF 217 (322)
T ss_dssp -----HTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHH
T ss_pred -----cCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHH
Confidence 023332 2333222221111 112468999999998763
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=83.25 E-value=1 Score=40.65 Aligned_cols=91 Identities=11% Similarity=0.035 Sum_probs=48.1
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEc--ccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTT--PIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEIL 150 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~--P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l 150 (391)
+.++++|++|+|||+.....+......+.+++++. +.+..+.++...+.... .+.++.+... ..|..+
T Consensus 99 ~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~-~v~v~~~~~~---------~~p~~~ 168 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQI-GVPVYGEPGE---------KDVVGI 168 (297)
T ss_dssp EEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHH-TCCEECCTTC---------CCHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccC-CeEEEecCCC---------CCHHHH
Confidence 35778999999999876544433335577777764 33433333322222211 2333322110 234443
Q ss_pred H-HHHhcCccccCccceEEEeccccc
Q psy6275 151 R-NMLYRGSEITREVGWVIFDEIHYM 175 (391)
Q Consensus 151 ~-~~l~~~~~~l~~~~~lViDE~h~~ 175 (391)
. ..+.... ...++++|+|=+-.+
T Consensus 169 ~~~~l~~~~--~~~~D~ViIDTpg~~ 192 (297)
T 1j8m_F 169 AKRGVEKFL--SEKMEIIIVDTAGRH 192 (297)
T ss_dssp HHHHHHHHH--HTTCSEEEEECCCSC
T ss_pred HHHHHHHHH--hCCCCEEEEeCCCCc
Confidence 3 2222111 147899999998765
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=83.18 E-value=0.48 Score=38.68 Aligned_cols=20 Identities=20% Similarity=0.300 Sum_probs=16.6
Q ss_pred CCcEEEEecCCcchHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEY 91 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~ 91 (391)
+..+++.|++|||||+..-.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~ 27 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASE 27 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHH
Confidence 56789999999999987543
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=83.17 E-value=0.75 Score=38.60 Aligned_cols=21 Identities=29% Similarity=0.379 Sum_probs=17.6
Q ss_pred cCCcEEEEecCCcchHHHHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEY 91 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~ 91 (391)
.+..+++.||+|||||+..-.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~ 48 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHG 48 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 567899999999999987543
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=83.14 E-value=1.1 Score=43.44 Aligned_cols=35 Identities=17% Similarity=0.152 Sum_probs=23.9
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEE
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYT 106 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl 106 (391)
|.-+.+.|++|+|||+..-..+...-..++++++.
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~ 327 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLA 327 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEe
Confidence 34578999999999987643332222456778776
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=83.11 E-value=1.4 Score=37.23 Aligned_cols=33 Identities=15% Similarity=0.252 Sum_probs=23.4
Q ss_pred CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHH
Q psy6275 58 LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEY 91 (391)
Q Consensus 58 ~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~ 91 (391)
.++.+... ..+..+..+++.|++|||||+..-.
T Consensus 12 ~~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~~~~ 44 (211)
T 1m7g_A 12 LTRSERTE-LRNQRGLTIWLTGLSASGKSTLAVE 44 (211)
T ss_dssp CCHHHHHH-HHTSSCEEEEEECSTTSSHHHHHHH
T ss_pred cCHHHhhc-ccCCCCCEEEEECCCCCCHHHHHHH
Confidence 34555554 3346677899999999999987643
|
| >1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=82.97 E-value=0.6 Score=39.70 Aligned_cols=34 Identities=12% Similarity=0.206 Sum_probs=22.1
Q ss_pred CCCCcHHHHHHHHHHhcC----CcEEEEecCCcchHHHH
Q psy6275 55 PFVLDPFQKEAILCIENN----QSVLVSAHTSAGKTVVA 89 (391)
Q Consensus 55 ~~~~~~~Q~~~i~~i~~~----~~~li~apTGsGKT~~~ 89 (391)
++++... ..++..+.++ +.+++.||+|+|||..+
T Consensus 38 ~~~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 38 QIEFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp TCCHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred CcCHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 3444444 4444444333 35999999999999875
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=82.83 E-value=0.55 Score=38.34 Aligned_cols=18 Identities=22% Similarity=0.244 Sum_probs=15.1
Q ss_pred cEEEEecCCcchHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEY 91 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~ 91 (391)
.+++.|++|||||+.+-.
T Consensus 4 ~I~i~G~~GsGKST~a~~ 21 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWARE 21 (181)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHH
Confidence 578999999999987543
|
| >4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A | Back alignment and structure |
|---|
Probab=82.82 E-value=0.52 Score=54.99 Aligned_cols=63 Identities=10% Similarity=0.091 Sum_probs=38.3
Q ss_pred cCCCCccCCCCCcHHHHHH----HHHHhcCCcEEEEecCCcchHHHHHHH--HHHHHhc-CCeEEEEccc
Q psy6275 47 KEKPAREYPFVLDPFQKEA----ILCIENNQSVLVSAHTSAGKTVVAEYA--IASSLKQ-SQRVIYTTPI 109 (391)
Q Consensus 47 ~~~~~~~~~~~~~~~Q~~~----i~~i~~~~~~li~apTGsGKT~~~~~~--~~~~l~~-~~~vlvl~P~ 109 (391)
+.+.+.+.++.+++.+..= ...+..++.++++||||||||.++-.. ++..+.. ..++.++-|.
T Consensus 894 i~~~~~~~~l~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~La~al~~l~~~~~~~~~inpk 963 (2695)
T 4akg_A 894 LKDAGQRSGFSMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKTVIDAMAIFDGHANVVYVIDTK 963 (2695)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEEEECTT
T ss_pred HHHHHHHcCCcccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeCCC
Confidence 3444556677777765332 234456788999999999999987433 3333322 2344555553
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=82.71 E-value=1.3 Score=38.98 Aligned_cols=35 Identities=14% Similarity=0.135 Sum_probs=21.9
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEE
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYT 106 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl 106 (391)
...++++|++|||||+.+-...-..-..+..++++
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~ 38 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVL 38 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEE
Confidence 44689999999999997644332211234445444
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=82.62 E-value=0.89 Score=37.64 Aligned_cols=24 Identities=17% Similarity=0.291 Sum_probs=19.0
Q ss_pred HhcCCcEEEEecCCcchHHHHHHH
Q psy6275 69 IENNQSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~~~~ 92 (391)
+..+..+++.|++|||||+..-..
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~~L 29 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCEKI 29 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHHHH
T ss_pred CcCCCEEEEECCCCCCHHHHHHHH
Confidence 345678999999999999976443
|
| >1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B* | Back alignment and structure |
|---|
Probab=82.62 E-value=2 Score=46.55 Aligned_cols=52 Identities=15% Similarity=0.141 Sum_probs=42.5
Q ss_pred cEEEEecCCcchHHHHHHHHHHHHhc------------CCeEEEEcccHHHHHHHHHHHHHhcc
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASSLKQ------------SQRVIYTTPIKALSNQKYREFEEQFK 125 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~l~~------------~~~vlvl~P~~~L~~q~~~~~~~~~~ 125 (391)
..+|.|+-|||||.+...-+++.+.. ..++|+++=|++-+.++..++.+...
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L~ 81 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNIH 81 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHHH
Confidence 45999999999999987777777642 24899999999999999888877654
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=82.49 E-value=0.75 Score=37.13 Aligned_cols=19 Identities=16% Similarity=0.139 Sum_probs=15.5
Q ss_pred cEEEEecCCcchHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~ 92 (391)
.+++.|++|||||+..-..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L 21 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKL 21 (173)
T ss_dssp EEEEECSSSSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999876443
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.45 E-value=1 Score=37.38 Aligned_cols=24 Identities=13% Similarity=0.238 Sum_probs=19.0
Q ss_pred HhcCCcEEEEecCCcchHHHHHHH
Q psy6275 69 IENNQSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~~~~ 92 (391)
+..+..+++.|++|||||+..-..
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L 32 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKL 32 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHH
Confidence 445678999999999999876443
|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A | Back alignment and structure |
|---|
Probab=82.36 E-value=13 Score=31.29 Aligned_cols=80 Identities=15% Similarity=0.113 Sum_probs=56.2
Q ss_pred CcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCccc-----------CCCCCEEEEcHHHH
Q psy6275 82 SAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTI-----------NPSSSCLIMTTEIL 150 (391)
Q Consensus 82 GsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~-----------~~~~~I~v~Tp~~l 150 (391)
...|..+. .-++.. ..+.++||.++++.-+..++..+....-.+..++|+.+. +...+|+|+|.
T Consensus 15 ~~~k~~~l-~~ll~~-~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~--- 89 (212)
T 3eaq_A 15 VRGRLEVL-SDLLYV-ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD--- 89 (212)
T ss_dssp TTSHHHHH-HHHHHH-HCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT---
T ss_pred HHHHHHHH-HHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC---
Confidence 34565443 222222 357899999999999999999998877688889998653 34578999994
Q ss_pred HHHHhcCccccCccceEEE
Q psy6275 151 RNMLYRGSEITREVGWVIF 169 (391)
Q Consensus 151 ~~~l~~~~~~l~~~~~lVi 169 (391)
+......+..++++|.
T Consensus 90 ---~~~~Gidi~~v~~Vi~ 105 (212)
T 3eaq_A 90 ---VAARGLDIPQVDLVVH 105 (212)
T ss_dssp ---TTTCSSSCCCBSEEEE
T ss_pred ---hhhcCCCCccCcEEEE
Confidence 2334455677888774
|
| >4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.21 E-value=1.1 Score=42.92 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=17.7
Q ss_pred CCcEEEEecCCcchHHHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~ 93 (391)
.+.+++.||+|+|||+.+-..+
T Consensus 243 prGILLyGPPGTGKTlLAkAiA 264 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCARAVA 264 (467)
T ss_dssp CSEEEECSCTTSSHHHHHHHHH
T ss_pred CCceEeeCCCCCcHHHHHHHHH
Confidence 4789999999999998754433
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=81.83 E-value=1.8 Score=36.29 Aligned_cols=24 Identities=13% Similarity=0.245 Sum_probs=18.9
Q ss_pred hcCCcEEEEecCCcchHHHHHHHH
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~~~ 93 (391)
..+..+++.|+.|||||+..-...
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~ 30 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLV 30 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHH
Confidence 356779999999999999864433
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=81.45 E-value=0.65 Score=38.42 Aligned_cols=21 Identities=24% Similarity=0.468 Sum_probs=16.9
Q ss_pred CCcEEEEecCCcchHHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~ 92 (391)
+..+++.|++|||||+..-..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L 25 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQAL 25 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 456899999999999976433
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=81.32 E-value=1.4 Score=42.05 Aligned_cols=91 Identities=15% Similarity=0.151 Sum_probs=49.5
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHhc-CCeEEEEc--ccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLKQ-SQRVIYTT--PIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEI 149 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~~-~~~vlvl~--P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~ 149 (391)
+.++++|++|+|||++..-.+...... +.+++++. |.+..+.+....+.... .+.++.++.. .+|..
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~-~l~v~~~~~~---------~dp~~ 170 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQV-GVDFFPSDVG---------QKPVD 170 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHH-TCEECCCCSS---------SCHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccC-CeeEEeCCCC---------CCHHH
Confidence 357788999999999875555444455 77888775 44444433332222221 2333322211 13544
Q ss_pred HH-HHHhcCccccCccceEEEeccccc
Q psy6275 150 LR-NMLYRGSEITREVGWVIFDEIHYM 175 (391)
Q Consensus 150 l~-~~l~~~~~~l~~~~~lViDE~h~~ 175 (391)
+. ..+.... ...++++|+|=+-.+
T Consensus 171 i~~~~l~~~~--~~~~D~VIIDTpG~l 195 (433)
T 2xxa_A 171 IVNAALKEAK--LKFYDVLLVDTAGRL 195 (433)
T ss_dssp HHHHHHHHHH--HTTCSEEEEECCCCC
T ss_pred HHHHHHHHHH--hCCCCEEEEECCCcc
Confidence 42 2222111 136899999997654
|
| >3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=81.31 E-value=3.2 Score=38.59 Aligned_cols=33 Identities=18% Similarity=0.329 Sum_probs=22.4
Q ss_pred EEEE-ecCCcchHHHHHHHHHHHHhcCCeEEEEc
Q psy6275 75 VLVS-AHTSAGKTVVAEYAIASSLKQSQRVIYTT 107 (391)
Q Consensus 75 ~li~-apTGsGKT~~~~~~~~~~l~~~~~vlvl~ 107 (391)
+.+. +.-|.|||++....+......+.+|+++-
T Consensus 146 Iav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD 179 (373)
T 3fkq_A 146 VIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLN 179 (373)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred EEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 4444 47789999987555444444578888875
|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.31 E-value=3.7 Score=33.34 Aligned_cols=67 Identities=16% Similarity=0.164 Sum_probs=50.2
Q ss_pred cCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCccc-----------CCCCCEEEEcHHHHHHHHhcCccccCccceE
Q psy6275 99 QSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTI-----------NPSSSCLIMTTEILRNMLYRGSEITREVGWV 167 (391)
Q Consensus 99 ~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~-----------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~l 167 (391)
.+.++||.++++..+..++..+......+..++|+.+. +...+|+|+|. .......+..++++
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~------~~~~Gid~~~~~~V 106 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN------VCARGIDVKQVTIV 106 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC------SCCTTTCCTTEEEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec------chhcCCCcccCCEE
Confidence 35799999999999999999998876678888888652 34568999984 22334456778888
Q ss_pred EEec
Q psy6275 168 IFDE 171 (391)
Q Consensus 168 ViDE 171 (391)
|.-+
T Consensus 107 i~~d 110 (175)
T 2rb4_A 107 VNFD 110 (175)
T ss_dssp EESS
T ss_pred EEeC
Confidence 7533
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=80.97 E-value=0.95 Score=41.33 Aligned_cols=21 Identities=29% Similarity=0.306 Sum_probs=16.6
Q ss_pred CcEEEEecCCcchHHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~ 93 (391)
+.++++||||||||......+
T Consensus 6 ~~i~i~GptGsGKTtla~~La 26 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALA 26 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 368999999999998764443
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=80.97 E-value=0.93 Score=36.64 Aligned_cols=21 Identities=19% Similarity=0.243 Sum_probs=17.3
Q ss_pred CcEEEEecCCcchHHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~ 93 (391)
+++++.|+.|||||++.-...
T Consensus 8 ~~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 689999999999999865443
|
| >1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=80.72 E-value=0.98 Score=42.06 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=17.3
Q ss_pred CCcEEEEecCCcchHHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~ 92 (391)
..++++.||+|+|||..+-..
T Consensus 72 ~~~ill~Gp~GtGKT~la~~l 92 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTL 92 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHH
Confidence 568999999999999876433
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=80.55 E-value=0.66 Score=38.33 Aligned_cols=20 Identities=25% Similarity=0.187 Sum_probs=16.4
Q ss_pred CCcEEEEecCCcchHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEY 91 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~ 91 (391)
+..+++.|++|||||+.+-.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~ 22 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCAR 22 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 45689999999999997644
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=80.49 E-value=0.82 Score=38.20 Aligned_cols=21 Identities=14% Similarity=0.181 Sum_probs=17.5
Q ss_pred cCCcEEEEecCCcchHHHHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEY 91 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~ 91 (391)
.+..+++.|+.|||||+..-.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~ 23 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMN 23 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHH
Confidence 467799999999999997543
|
| >1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A | Back alignment and structure |
|---|
Probab=80.42 E-value=1.7 Score=38.53 Aligned_cols=43 Identities=16% Similarity=0.086 Sum_probs=25.5
Q ss_pred cCCCCccCCCCCcHHHHHHHHHHhcC----C-cEEEEecCCcchHHHHH
Q psy6275 47 KEKPAREYPFVLDPFQKEAILCIENN----Q-SVLVSAHTSAGKTVVAE 90 (391)
Q Consensus 47 ~~~~~~~~~~~~~~~Q~~~i~~i~~~----~-~~li~apTGsGKT~~~~ 90 (391)
+.+.++..|++|-.+-.. +..++++ + .+++.||+|+|||..+.
T Consensus 75 i~~~l~~qg~~~~~~~~~-l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 75 IYKILELNGYDPQYAASV-FLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp HHHHHHHTTCCHHHHHHH-HHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHH-HHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 344455555553333222 3334433 2 49999999999998755
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=80.24 E-value=1 Score=41.39 Aligned_cols=20 Identities=20% Similarity=0.242 Sum_probs=16.0
Q ss_pred CcEEEEecCCcchHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~ 92 (391)
..++|+||||||||..+...
T Consensus 8 ~lI~I~GptgSGKTtla~~L 27 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEV 27 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHH
Confidence 35889999999999876443
|
| >3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii} | Back alignment and structure |
|---|
Probab=80.23 E-value=1.1 Score=41.41 Aligned_cols=34 Identities=18% Similarity=0.089 Sum_probs=23.6
Q ss_pred CCcHHHHHHHHH-------HhcCCc--EEEEecCCcchHHHHH
Q psy6275 57 VLDPFQKEAILC-------IENNQS--VLVSAHTSAGKTVVAE 90 (391)
Q Consensus 57 ~~~~~Q~~~i~~-------i~~~~~--~li~apTGsGKT~~~~ 90 (391)
.+..-|.+.+.. +.+|.| ++..|.||||||.+..
T Consensus 62 ~~~~~Q~~vf~~v~~lv~~~l~G~n~tifAYGqTGSGKTyTm~ 104 (349)
T 3t0q_A 62 EPSHTNKEIFEEIRQLVQSSLDGYNVCIFAYGQTGSGKTYTML 104 (349)
T ss_dssp CTTCCHHHHHHHHHHHHHGGGTTCEEEEEEECSTTSSHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHHHCCcceeEEEeCCCCCCCceEeC
Confidence 344556655543 356766 6789999999999863
|
| >3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.17 E-value=1.4 Score=40.91 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=17.3
Q ss_pred HhcCCc--EEEEecCCcchHHHH
Q psy6275 69 IENNQS--VLVSAHTSAGKTVVA 89 (391)
Q Consensus 69 i~~~~~--~li~apTGsGKT~~~ 89 (391)
+++|.| ++..|.||||||.+.
T Consensus 100 ~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 100 ALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHTTCCEEEEEEESTTSSHHHHH
T ss_pred HhCCCCEEEEEeCCCCCCccEEe
Confidence 466765 789999999999875
|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
Probab=80.13 E-value=0.83 Score=53.97 Aligned_cols=65 Identities=15% Similarity=0.173 Sum_probs=39.7
Q ss_pred cccCCCCccCCCCCcHHHHH-HHH---HHhcCCcEEEEecCCcchHHHHHHHH--HHHHhc-CCeEEEEccc
Q psy6275 45 QSKEKPAREYPFVLDPFQKE-AIL---CIENNQSVLVSAHTSAGKTVVAEYAI--ASSLKQ-SQRVIYTTPI 109 (391)
Q Consensus 45 ~~~~~~~~~~~~~~~~~Q~~-~i~---~i~~~~~~li~apTGsGKT~~~~~~~--~~~l~~-~~~vlvl~P~ 109 (391)
..+.+.+.+.|+.+.+.+.. ++. .+..++.++++||||+|||.++-... +..+.. .....++-|.
T Consensus 875 ~ai~~~~~~~~L~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~L~~al~~l~~~~~~~~~iNPK 946 (3245)
T 3vkg_A 875 KKIQEIAKQRHLVTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEVYLEAIEQVDNIKSEAHVMDPK 946 (3245)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHHHHHHHTTTTTCEEEEEEECTT
T ss_pred HHHHHHHHHcCCccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHHHHHHHHHhhCCCceEEEECCC
Confidence 33445566678887776543 332 33456779999999999999974332 322211 2345556664
|
| >1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A* | Back alignment and structure |
|---|
Probab=80.08 E-value=1.2 Score=41.22 Aligned_cols=34 Identities=12% Similarity=0.112 Sum_probs=23.9
Q ss_pred CCcHHHHHHHHHH-------hcCCc--EEEEecCCcchHHHHH
Q psy6275 57 VLDPFQKEAILCI-------ENNQS--VLVSAHTSAGKTVVAE 90 (391)
Q Consensus 57 ~~~~~Q~~~i~~i-------~~~~~--~li~apTGsGKT~~~~ 90 (391)
.+..-|.+.+..+ .+|.| ++..|.||||||.+..
T Consensus 61 ~~~~~Q~~Vy~~v~~lv~~~l~G~n~tifAYGqTGSGKTyTM~ 103 (347)
T 1f9v_A 61 DQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTML 103 (347)
T ss_dssp CTTCCHHHHHHHHHHHHGGGGGTCCEEEEEECCTTSSHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCceeEEEEECCCCCCCcEecc
Confidence 3455566665432 56765 7889999999998853
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 391 | ||||
| d2p6ra3 | 202 | c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus | 9e-23 | |
| d2bmfa2 | 305 | c.37.1.14 (A:178-482) Dengue virus helicase {Dengu | 2e-16 | |
| d1gkub1 | 237 | c.37.1.16 (B:1-250) Helicase-like "domain" of reve | 2e-14 | |
| d1yksa1 | 140 | c.37.1.14 (A:185-324) YFV helicase domain {Yellow | 1e-13 | |
| d1hv8a1 | 208 | c.37.1.19 (A:3-210) Putative DEAD box RNA helicase | 2e-11 | |
| d1a1va1 | 136 | c.37.1.14 (A:190-325) HCV helicase domain {Human h | 3e-11 | |
| d2fz4a1 | 206 | c.37.1.19 (A:24-229) DNA repair protein RAD25 {Arc | 3e-11 | |
| d1wp9a1 | 200 | c.37.1.19 (A:1-200) putative ATP-dependent RNA hel | 1e-10 | |
| d1oywa2 | 206 | c.37.1.19 (A:1-206) RecQ helicase domain {Escheric | 8e-10 | |
| d2eyqa3 | 233 | c.37.1.19 (A:546-778) Transcription-repair couplin | 9e-10 | |
| d2g9na1 | 218 | c.37.1.19 (A:21-238) Initiation factor 4a {Human ( | 2e-07 | |
| d1rifa_ | 282 | c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 | 7e-07 | |
| d2p6ra4 | 201 | c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglob | 6e-06 | |
| d1veca_ | 206 | c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Huma | 2e-04 | |
| d1qdea_ | 212 | c.37.1.19 (A:) Initiation factor 4a {Baker's yeast | 3e-04 | |
| d1wrba1 | 238 | c.37.1.19 (A:164-401) putative ATP-dependent RNA h | 5e-04 | |
| d1s2ma1 | 206 | c.37.1.19 (A:46-251) Putative ATP-dependent RNA he | 0.001 | |
| d1t6na_ | 207 | c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP5 | 0.004 |
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 202 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 92.7 bits (229), Expect = 9e-23
Identities = 44/183 (24%), Positives = 89/183 (48%), Gaps = 16/183 (8%)
Query: 58 LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKY 117
L P Q EA+ + + +++L++ T+AGKT++AE A+ + + +Y P++AL+ +KY
Sbjct: 26 LFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKY 85
Query: 118 REFEEQFKD-------VGLITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFD 170
F++ K G ++ T+E +++ + + V ++ D
Sbjct: 86 ESFKKWEKIGLRIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVD 145
Query: 171 EIHYMRDKERGYVWE---ETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYT 227
EIH + ++RG E + ++ +R + LSAT PN ++ A+W+ +
Sbjct: 146 EIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAPNVTEIAEWLD------ADYYVS 199
Query: 228 DYR 230
D+R
Sbjct: 200 DWR 202
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Score = 76.9 bits (188), Expect = 2e-16
Identities = 19/179 (10%), Positives = 45/179 (25%), Gaps = 2/179 (1%)
Query: 69 IENNQSVLVSAHTSAGKT-VVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDV 127
+ ++ H AGKT + ++K+ R + P + ++ +
Sbjct: 6 FRKKRLTIMDLHPGAGKTKRYLPAIVREAIKRGLRTLILAPTRVVAAEMEEALRGLPIRY 65
Query: 128 GLITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEET 187
+M L + +I DE H+ +
Sbjct: 66 QTPAIRAEHTGREIVDLMCHATFTMRLLSPIRV-PNYNLIIMDEAHFTDPASIAARGYIS 124
Query: 188 LILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGI 246
+ +F++AT P + + + + + G
Sbjct: 125 TRVEMGEAAGIFMTATPPGSRDPFPQSNAPIMDEEREIPERSWNSGHEWVTDFKGKTVW 183
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 237 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 70.3 bits (171), Expect = 2e-14
Identities = 25/198 (12%), Positives = 48/198 (24%), Gaps = 27/198 (13%)
Query: 33 ALPPDLEYQPLAQSKEKPAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYA 92
L P+ + P QK I +S +A T GKT
Sbjct: 22 CLFPEDFLLKEFVEFFRKCVGEPR---AIQKMWAKRILRKESFAATAPTGVGKTSFGLAM 78
Query: 93 IASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILRN 152
+ +R P L Q + + G+ T ++ E
Sbjct: 79 SLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQ 138
Query: 153 -------------MLYRGSEITREVGWVIFDEIHYMRDKER---------GYVWEETLIL 190
L + ++ D++ + + G+ ++
Sbjct: 139 NLRNFKIVITTTQFLSKHYRELGHFDFIFVDDVDAILKASKNVDKLLHLLGFHYDLKTKS 198
Query: 191 LSDNVR--FVFLSATIPN 206
R + +AT
Sbjct: 199 WVGEARGCLMVSTATAKK 216
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 140 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Score = 65.5 bits (158), Expect = 1e-13
Identities = 20/141 (14%), Positives = 43/141 (30%), Gaps = 8/141 (5%)
Query: 69 IENNQSVLVSAHTSAGKTVVAEYAIASSLKQS-QRVIYTTPIKALSNQKYREFEEQFKDV 127
++ + ++ H AGKT I + + R + P + + ++ F
Sbjct: 4 LKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGLDVKF 63
Query: 128 GLITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIH---YMRDKERGYVW 184
+ M L + + + +I DE H RG+
Sbjct: 64 HTQAFSAHGSGREVIDAMCHATLTYRMLEPTRVVN-WEVIIMDEAHFLDPASIAARGWAA 122
Query: 185 EETLILLSDNVRFVFLSATIP 205
++ + ++AT P
Sbjct: 123 H---RARANESATILMTATPP 140
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 208 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 60.8 bits (147), Expect = 2e-11
Identities = 34/160 (21%), Positives = 66/160 (41%), Gaps = 13/160 (8%)
Query: 60 PFQKEAI-LCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQR--VIYTTPIKALSNQK 116
Q + I L + + +++ A T +GKT + + ++ I TP + L+ Q
Sbjct: 29 DIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQV 88
Query: 117 YREFEEQFKD----VGLITGDVTINP------SSSCLIMTTEILRNMLYRGSEITREVGW 166
E E + + I G I P +++ ++ T + + + RG+ + V +
Sbjct: 89 ADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINRGTLNLKNVKY 148
Query: 167 VIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPN 206
I DE M + E+ L + + R + SAT+P
Sbjct: 149 FILDEADEMLNMGFIKDVEKILNACNKDKRILLFSATMPR 188
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 136 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Score = 58.7 bits (141), Expect = 3e-11
Identities = 21/136 (15%), Positives = 37/136 (27%), Gaps = 6/136 (4%)
Query: 69 IENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVG 128
++ Q + A T +GK+ A Q +V+ P A + +
Sbjct: 5 PQSFQVAHLHAPTGSGKSTKVPAAY---AAQGYKVLVLNPSVAATLGFGAYMSKAHGVD- 60
Query: 129 LITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYM-RDKERGYVWEET 187
+ ++ +T L G +I DE H G
Sbjct: 61 -PNIRTGVRTITTGSPITYSTYGKFLADGGCSGGAYDIIICDECHSTDATSILGIGTVLD 119
Query: 188 LILLSDNVRFVFLSAT 203
+ V +AT
Sbjct: 120 QAETAGARLVVLATAT 135
|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 59.9 bits (144), Expect = 3e-11
Identities = 25/157 (15%), Positives = 54/157 (34%), Gaps = 12/157 (7%)
Query: 48 EKPAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTT 107
P + L +Q++A+ ++ + T +GKT A+A+ + S +
Sbjct: 61 PTPYFDAEISLRDYQEKALERWLVDKRGCIVLPTGSGKTH---VAMAAINELSTPTLIVV 117
Query: 108 PIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWV 167
P AL+ Q ++ +T + ++ +
Sbjct: 118 PTLALAEQWKERLGIFGEEY----VGEFSGRIKELKPLTVSTYDSAYVNAEKLGNRFMLL 173
Query: 168 IFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATI 204
IFDE+H++ + + +S + L+AT
Sbjct: 174 IFDEVHHLPAESY-----VQIAQMSIAPFRLGLTATF 205
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Score = 58.2 bits (139), Expect = 1e-10
Identities = 34/191 (17%), Positives = 69/191 (36%), Gaps = 15/191 (7%)
Query: 60 PFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSL-KQSQRVIYTTPIKALSNQKYR 118
+Q+ + + L+ T GKT++A L K +V+ P K L Q
Sbjct: 12 IYQEVIYAKCKE-TNCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAE 70
Query: 119 EFEEQFKD----VGLITGDVTINPSSSCL------IMTTEILRNMLYRGSEITREVGWVI 168
F F + +TG+ + S + T + + N L G +V ++
Sbjct: 71 SFRRLFNLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIV 130
Query: 169 FDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVYT 227
FDE H + N + L+A+ + + + +++L + +
Sbjct: 131 FDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYR-S 189
Query: 228 DYRPTPLQHYL 238
+ P ++ Y+
Sbjct: 190 ENSP-DVRPYV 199
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Score = 56.2 bits (134), Expect = 8e-10
Identities = 24/165 (14%), Positives = 50/165 (30%), Gaps = 18/165 (10%)
Query: 60 PFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYRE 119
P Q+E I + + + LV T GK++ + + +P+ +L + +
Sbjct: 28 PGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNG---LTVVVSPLISLMKDQVDQ 84
Query: 120 FEEQFKDVGLITGDVTINPSSSC-----------LIMTTEILRNMLYRGSEITREVGWVI 168
+ + T L + E L + +
Sbjct: 85 LQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLA 144
Query: 169 FDEIHYMRDKERGYVWE----ETLILLSDNVRFVFLSATIPNASQ 209
DE H + + E L + F+ L+AT + ++
Sbjct: 145 VDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTR 189
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Score = 56.3 bits (135), Expect = 9e-10
Identities = 38/187 (20%), Positives = 63/187 (33%), Gaps = 22/187 (11%)
Query: 33 ALPPDLEYQPLAQSKEKPAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYA 92
A D E L + +C LV GKT VA A
Sbjct: 37 AFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRA 96
Query: 93 IASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEIL-- 150
++ ++V P L+ Q Y F ++F + + + + T+IL
Sbjct: 97 AFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPV---RIEMISRFRSAKEQTQILAE 153
Query: 151 -----------RNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVF 199
+ L + +++G +I DE H G +E + + NV +
Sbjct: 154 VAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEH-----RFGVRHKERIKAMRANVDILT 208
Query: 200 LSAT-IP 205
L+AT IP
Sbjct: 209 LTATPIP 215
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Length = 218 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.1 bits (116), Expect = 2e-07
Identities = 30/180 (16%), Positives = 58/180 (32%), Gaps = 17/180 (9%)
Query: 60 PFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQ---RVIYTTPIKALSNQK 116
Q+ AIL V+ A + GKT +I ++ + + P + L+ Q
Sbjct: 37 AIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQI 96
Query: 117 YREFEEQFKDVGLITGDVTINPSSSC------------LIMTTEILRNMLYRGSEITREV 164
+ +G + ++ T + +ML R + +
Sbjct: 97 QKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYI 156
Query: 165 GWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHV 224
+ DE M + + L+ N + V LSAT+P+ + P +
Sbjct: 157 KMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVL--EVTKKFMRDPIRI 214
|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Length = 282 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: DNA helicase UvsW domain: DNA helicase UvsW species: Bacteriophage T4 [TaxId: 10665]
Score = 48.0 bits (113), Expect = 7e-07
Identities = 25/175 (14%), Positives = 63/175 (36%), Gaps = 10/175 (5%)
Query: 39 EYQPLAQSKEKPAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK 98
++ E + +QK+A+ N+ +++ TSAG++++ L+
Sbjct: 95 DFDEWLSKLEIYSGNKRIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLE 154
Query: 99 Q-SQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSC-----LIMTTEILRN 152
+++ P AL+ Q +F + + + S + +
Sbjct: 155 NYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDKYKNDAPVVVGTWQT 214
Query: 153 MLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNA 207
++ + E + G ++ DE H K + L++ + LS ++ +
Sbjct: 215 VVKQPKEWFSQFGMMMNDECHLATGK----SISSIISGLNNCMFKFGLSGSLRDG 265
|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 44.5 bits (104), Expect = 6e-06
Identities = 13/79 (16%), Positives = 29/79 (36%), Gaps = 9/79 (11%)
Query: 309 PVIVFSFSKKDCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPL 368
V+VF +++ E A++++ + E L + +S + +
Sbjct: 42 GVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAE---------C 92
Query: 369 LRRGIGIHHGVKPYGLWQS 387
+R+G HH G +
Sbjct: 93 VRKGAAFHHAGLLNGQRRV 111
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.6 bits (91), Expect = 2e-04
Identities = 31/180 (17%), Positives = 73/180 (40%), Gaps = 17/180 (9%)
Query: 60 PFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSL---KQSQRVIYTTPIKALSNQK 116
P Q+E+I + + +L A GK+ + L K + + + P + L+ Q
Sbjct: 28 PIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQV 87
Query: 117 YREFEEQFKDVGLITGDVT------------INPSSSCLIMTTEILRNMLYRGSEITREV 164
+ + K +G T ++ + +I T + +++ +G V
Sbjct: 88 SQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHV 147
Query: 165 GWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHV 224
++ DE + ++ + E+ ++ L N + + SAT P + Q ++++ +P +
Sbjct: 148 QMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQ--KFMNSHLEKPYEI 205
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.4 bits (91), Expect = 3e-04
Identities = 31/160 (19%), Positives = 54/160 (33%), Gaps = 13/160 (8%)
Query: 60 PFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSL---KQSQRVIYTTPIKALSNQK 116
Q+ AI+ I VL A + GKT A + ++ + + P + L+ Q
Sbjct: 35 AIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQI 94
Query: 117 YREFEEQFKDVGLITGDVTINPSSSC----------LIMTTEILRNMLYRGSEITREVGW 166
+ + + S ++ T + + + R T ++
Sbjct: 95 QKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKM 154
Query: 167 VIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPN 206
I DE M + LL + V LSAT+PN
Sbjct: 155 FILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPN 194
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Score = 39.1 bits (90), Expect = 5e-04
Identities = 33/175 (18%), Positives = 60/175 (34%), Gaps = 27/175 (15%)
Query: 60 PFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSL------------KQSQRVIYTT 107
P QK AI I ++ ++ A T +GKT I + L + +
Sbjct: 46 PIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILA 105
Query: 108 PIKALSNQKYREFEEQFKDVGL----ITGDVTINP-------SSSCLIMTTEILRNMLYR 156
P + L+ Q E ++ + L + G + L+ T L + + +
Sbjct: 106 PTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEK 165
Query: 157 GSEITREVGWVIFDEIHYMRDKERG----YVWEETLILLSDNVRFVFLSATIPNA 207
+++ DE M D + EE+ + N + + SAT P
Sbjct: 166 NKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKE 220
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.3 bits (85), Expect = 0.001
Identities = 34/179 (18%), Positives = 63/179 (35%), Gaps = 16/179 (8%)
Query: 60 PFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQS---QRVIYTTPIKALSNQK 116
P Q+EAI + +L A GKT +K + + P + L+ Q
Sbjct: 26 PIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQT 85
Query: 117 YREFEEQFKDVGLITGDVT-----------INPSSSCLIMTTEILRNMLYRGSEITREVG 165
+ K G+ T +N + L+ T + ++ R +
Sbjct: 86 SQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCS 145
Query: 166 WVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHV 224
I DE M ++ + E+ L L + + SAT P + +++ H+P +
Sbjct: 146 LFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVK--EFMVKHLHKPYEI 202
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.0 bits (82), Expect = 0.004
Identities = 29/164 (17%), Positives = 52/164 (31%), Gaps = 17/164 (10%)
Query: 60 PFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQ---RVIYTTPIKALSNQK 116
Q E I VL A + GKT V A L+ V+ + L+ Q
Sbjct: 26 EVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQI 85
Query: 117 YREFEEQFKDVGLITGDVTINPSSS-------------CLIMTTEILRNMLYRGSEITRE 163
+E+E K + + V S ++ T + + S +
Sbjct: 86 SKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKH 145
Query: 164 VGWVIFDEIHYMRDKERGYVWEETLI-LLSDNVRFVFLSATIPN 206
+ I DE M ++ + + + + + SAT+
Sbjct: 146 IKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSK 189
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 391 | |||
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 100.0 | |
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 100.0 | |
| d1t6na_ | 207 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 100.0 | |
| d2g9na1 | 218 | Initiation factor 4a {Human (Homo sapiens) [TaxId: | 100.0 | |
| d1qdea_ | 212 | Initiation factor 4a {Baker's yeast (Saccharomyces | 100.0 | |
| d1wrba1 | 238 | putative ATP-dependent RNA helicase VlgB {Flatworm | 100.0 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 100.0 | |
| d1s2ma1 | 206 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.98 | |
| d1q0ua_ | 209 | Probable DEAD box RNA helicase YqfR {Bacillus stea | 99.97 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.96 | |
| d1oywa2 | 206 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.93 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.92 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.92 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 99.91 | |
| d2fz4a1 | 206 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.81 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 99.81 | |
| d1rifa_ | 282 | DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] | 99.81 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 99.81 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.79 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.77 | |
| d1z3ix2 | 298 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 99.26 | |
| d1z63a1 | 230 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 99.24 | |
| d1fuka_ | 162 | Initiation factor 4a {Baker's yeast (Saccharomyces | 98.81 | |
| d1hv8a2 | 155 | Putative DEAD box RNA helicase {Archaeon Methanoco | 98.7 | |
| d2j0sa2 | 168 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 98.69 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 98.63 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 98.59 | |
| d1t5ia_ | 168 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 98.58 | |
| d1c4oa2 | 174 | Nucleotide excision repair enzyme UvrB {Thermus th | 98.54 | |
| d1oywa3 | 200 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 98.51 | |
| d2rb4a1 | 168 | ATP-dependent RNA helicase DDX25 {Human (Homo sapi | 98.48 | |
| d1tf5a3 | 273 | Translocation ATPase SecA, nucleotide-binding doma | 98.44 | |
| d2p6ra4 | 201 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 98.38 | |
| d1t5la2 | 181 | Nucleotide excision repair enzyme UvrB {Bacillus c | 98.34 | |
| d1nkta3 | 288 | Translocation ATPase SecA, nucleotide-binding doma | 98.31 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 97.93 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 97.66 | |
| d1gkub2 | 248 | Helicase-like "domain" of reverse gyrase {Archaeon | 97.65 | |
| d1jr6a_ | 138 | HCV helicase domain {Human hepatitis C virus (HCV) | 97.52 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 97.39 | |
| d1wp9a2 | 286 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 97.38 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 97.36 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 97.32 | |
| d2fwra1 | 200 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 97.32 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 97.22 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 97.13 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 97.1 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 97.09 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 96.96 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 96.9 | |
| d1t5la1 | 413 | Nucleotide excision repair enzyme UvrB {Bacillus c | 96.86 | |
| d2eyqa5 | 211 | Transcription-repair coupling factor, TRCF {Escher | 96.36 | |
| d1xx6a1 | 141 | Thymidine kinase, TK1, N-terminal domain {Clostrid | 96.33 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 96.31 | |
| d1xbta1 | 133 | Thymidine kinase, TK1, N-terminal domain {Human (H | 96.18 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 96.0 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 96.0 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 95.89 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 95.84 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 95.78 | |
| d2eyqa5 | 211 | Transcription-repair coupling factor, TRCF {Escher | 95.75 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.74 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 95.72 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 95.66 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.48 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 95.42 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 95.35 | |
| d1tf5a4 | 175 | Translocation ATPase SecA, nucleotide-binding doma | 95.35 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 95.26 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 95.05 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 94.99 | |
| d1c4oa1 | 408 | Nucleotide excision repair enzyme UvrB {Thermus th | 94.06 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 93.99 | |
| d1a1va2 | 299 | HCV helicase domain {Human hepatitis C virus (HCV) | 93.86 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 93.83 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 93.77 | |
| d1c4oa2 | 174 | Nucleotide excision repair enzyme UvrB {Thermus th | 93.67 | |
| d1g5ta_ | 157 | ATP:corrinoid adenosyltransferase CobA {Salmonella | 93.33 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 93.27 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 93.07 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 92.73 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 92.71 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 92.5 | |
| d1gm5a4 | 206 | RecG helicase domain {Thermotoga maritima [TaxId: | 92.44 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 92.3 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 91.97 | |
| d1yksa2 | 299 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 91.9 | |
| d1t5la2 | 181 | Nucleotide excision repair enzyme UvrB {Bacillus c | 91.84 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 91.81 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 91.74 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 91.69 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 91.6 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 91.52 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 91.42 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 91.33 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 91.03 | |
| d1w36b1 | 485 | Exodeoxyribonuclease V beta chain (RecB), N-termin | 90.95 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 90.91 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 90.67 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 90.58 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 90.54 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 90.42 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 90.22 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 89.86 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 89.84 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 89.82 | |
| d1nkta4 | 219 | Translocation ATPase SecA, nucleotide-binding doma | 89.73 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 89.62 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 89.2 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 89.2 | |
| d1byia_ | 224 | Dethiobiotin synthetase {Escherichia coli [TaxId: | 89.18 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 88.96 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 88.91 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 88.51 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 88.35 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 88.19 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 87.75 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 87.73 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 87.58 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 87.48 | |
| d1z3ix1 | 346 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 87.35 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 87.3 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 87.15 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 87.14 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 87.13 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 87.12 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 86.95 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 86.9 | |
| d1z5za1 | 244 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 86.88 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 86.87 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 86.77 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 86.51 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 86.01 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 85.81 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 85.79 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 85.66 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 85.29 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 85.26 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 85.25 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 85.2 | |
| d1fuka_ | 162 | Initiation factor 4a {Baker's yeast (Saccharomyces | 85.19 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 84.95 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 84.68 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 84.2 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 83.9 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 83.86 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 83.67 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 83.21 | |
| d1jr6a_ | 138 | HCV helicase domain {Human hepatitis C virus (HCV) | 83.05 | |
| d2j0sa2 | 168 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 82.8 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 82.46 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 81.43 | |
| d1oywa3 | 200 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 81.32 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 81.31 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 81.1 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 81.02 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 80.93 | |
| d1bg2a_ | 323 | Kinesin {Human (Homo sapiens) [TaxId: 9606]} | 80.9 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 80.63 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 80.57 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 80.52 | |
| d1t5ia_ | 168 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 80.14 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 80.03 |
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.4e-36 Score=262.64 Aligned_cols=191 Identities=18% Similarity=0.249 Sum_probs=167.1
Q ss_pred cCCCCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh---cCCeEEEEcc
Q psy6275 33 ALPPDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK---QSQRVIYTTP 108 (391)
Q Consensus 33 ~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~---~~~~vlvl~P 108 (391)
....+|+.++|++.+.++++++||+ ||++|.++||.+++|+|+++.||||||||++|++|+++.+. ...+++|++|
T Consensus 14 ~~~~sF~~l~L~~~l~~~L~~~g~~~pt~IQ~~aIp~il~g~dvi~~a~TGSGKTlayllPil~~l~~~~~~~~~lil~P 93 (222)
T d2j0sa1 14 DVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAP 93 (222)
T ss_dssp CCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECS
T ss_pred CCCCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCeEEEcCcchhhhhhhcccccccccccccCceeEEecc
Confidence 3345899999999999999999998 99999999999999999999999999999999999999874 3578999999
Q ss_pred cHHHHHHHHHHHHHhcc----cceeeeCCccc-------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCc
Q psy6275 109 IKALSNQKYREFEEQFK----DVGLITGDVTI-------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRD 177 (391)
Q Consensus 109 ~~~L~~q~~~~~~~~~~----~v~~~~g~~~~-------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~ 177 (391)
|++|+.|+++.+..+.+ .+..+.|+... ...++|+|+||+++.+++......+++++++|+||||.|++
T Consensus 94 treLa~Qi~~~~~~l~~~~~i~~~~~~g~~~~~~~~~~l~~~~~Ilv~TPgrl~~~~~~~~~~~~~l~~lVlDEaD~ll~ 173 (222)
T d2j0sa1 94 TRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLN 173 (222)
T ss_dssp SHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTS
T ss_pred hHHHHHHHHHHHHHHhCccceeEEEEeecccchhhHHHhccCCeEEeCCCCcHHhcccccccccccceeeeecchhHhhh
Confidence 99999999999999876 45556666553 23689999999999999998888899999999999999999
Q ss_pred cccchhHHHHHHHhCCCCcEEEEcccCCChHHHHHHhccccCCCeeEe
Q psy6275 178 KERGYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVV 225 (391)
Q Consensus 178 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~ 225 (391)
.++...+..++..++.++|++++|||+++. +.++...+..+|+.+.
T Consensus 174 ~~f~~~i~~I~~~l~~~~Q~ilfSAT~~~~--v~~l~~~~l~~Pv~I~ 219 (222)
T d2j0sa1 174 KGFKEQIYDVYRYLPPATQVVLISATLPHE--ILEMTNKFMTDPIRIL 219 (222)
T ss_dssp TTTHHHHHHHHTTSCTTCEEEEEESCCCHH--HHTTGGGTCSSCEEEC
T ss_pred cCcHHHHHHHHHhCCCCCEEEEEEEeCCHH--HHHHHHHHCCCCEEEE
Confidence 999999999999999999999999999765 3344445566776654
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.1e-35 Score=256.14 Aligned_cols=186 Identities=18% Similarity=0.253 Sum_probs=162.5
Q ss_pred CCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh---cCCeEEEEcccHH
Q psy6275 36 PDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK---QSQRVIYTTPIKA 111 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~---~~~~vlvl~P~~~ 111 (391)
.+|++++|++.+.+++.++||+ ||++|+++||.+++|+|+++.||||||||++|++|+++.+. .+.++++++|+++
T Consensus 3 ~~F~~l~L~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKTlayllP~l~~~~~~~~~~~~lil~pt~e 82 (206)
T d1veca_ 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRE 82 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHH
T ss_pred CChhccCcCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEeeccCccccccccccchhhcccccccCcceEEEeecch
Confidence 5799999999999999999997 99999999999999999999999999999999999999874 4679999999999
Q ss_pred HHHHHHHHHHHhcc-----cceeeeCCcc-------cCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccc
Q psy6275 112 LSNQKYREFEEQFK-----DVGLITGDVT-------INPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKE 179 (391)
Q Consensus 112 L~~q~~~~~~~~~~-----~v~~~~g~~~-------~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~ 179 (391)
|+.|+++.+....+ .+....|+.. ....++|+|+||+++..++..+...+.+++++|+||||.|++.+
T Consensus 83 l~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ivv~TPgrl~~~~~~~~~~~~~l~~lVlDEaD~ll~~~ 162 (206)
T d1veca_ 83 LALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQD 162 (206)
T ss_dssp HHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTT
T ss_pred hhHHHHHHHHHHhhcccCcccccccCCccHHHHHHHHHhccCeEEeCCccccccccchhccccccceEEEeccccccccc
Confidence 99999999988765 2333444433 24578999999999999999888889999999999999999999
Q ss_pred cchhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHHhccccCCCeeE
Q psy6275 180 RGYVWEETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHV 224 (391)
Q Consensus 180 ~~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v 224 (391)
+...++.++..++.++|++++|||+++. .++++ .++.+|+.+
T Consensus 163 f~~~i~~I~~~~~~~~Q~~l~SAT~~~~v~~l~~---~~l~~P~~I 205 (206)
T d1veca_ 163 FVQIMEDIILTLPKNRQILLYSATFPLSVQKFMN---SHLEKPYEI 205 (206)
T ss_dssp THHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHH---HHCSSCEEE
T ss_pred hHHHHHHHHHhCCCCCEEEEEEecCCHHHHHHHH---HHCCCCEEE
Confidence 9999999999999999999999999765 44444 555666543
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.5e-34 Score=252.01 Aligned_cols=186 Identities=18% Similarity=0.202 Sum_probs=162.3
Q ss_pred CCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc---CCeEEEEcccHHH
Q psy6275 37 DLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ---SQRVIYTTPIKAL 112 (391)
Q Consensus 37 ~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~---~~~vlvl~P~~~L 112 (391)
+|++++|++.+.+++.++||+ |||+|+++||.+++|+|+++.||||||||++|++|+++.+.. +.++++++|+++|
T Consensus 2 ~F~dl~L~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvl~~A~TGsGKTla~~lp~l~~~~~~~~~~~~lil~PtreL 81 (207)
T d1t6na_ 2 GFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTREL 81 (207)
T ss_dssp CSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHH
T ss_pred CccccCcCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCeEEEeccccccccccccceeeeecccCCCceEEEEeccchh
Confidence 688999999999999999998 999999999999999999999999999999999999998754 5689999999999
Q ss_pred HHHHHHHHHHhcc-----cceeeeCCccc--------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCcc-
Q psy6275 113 SNQKYREFEEQFK-----DVGLITGDVTI--------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDK- 178 (391)
Q Consensus 113 ~~q~~~~~~~~~~-----~v~~~~g~~~~--------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~- 178 (391)
+.|+.+.++.+.. .+....|+... ...++|+|+||+++..++.+....++++.++|+||||.|++.
T Consensus 82 ~~qi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ilI~TP~rl~~~~~~~~~~l~~l~~lVlDEaD~ll~~~ 161 (207)
T d1t6na_ 82 AFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQL 161 (207)
T ss_dssp HHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSH
T ss_pred hHHHHHHHHHHHhhCCCceeEEEeccccHHHHHHHHHhcCCCEEEeCcchhhhhccCCceeccccceeehhhhhhhhhcC
Confidence 9999999998886 34556666543 236899999999999999988888999999999999998874
Q ss_pred ccchhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHHhccccCCCeeEe
Q psy6275 179 ERGYVWEETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVV 225 (391)
Q Consensus 179 ~~~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~ 225 (391)
++...+..+++.++.++|++++|||+++. +++++ .+..+|..+.
T Consensus 162 ~~~~~i~~I~~~~~~~~Q~il~SAT~~~~v~~l~~---~~l~~P~~I~ 206 (207)
T d1t6na_ 162 DMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR---KFMQDPMEIF 206 (207)
T ss_dssp HHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHH---TTCSSCEEEE
T ss_pred CcHHHHHHHHHhCCCCCEEEEEeeeCCHHHHHHHH---HHCCCCEEEe
Confidence 67778889999999999999999999876 66666 4456776654
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.2e-34 Score=252.53 Aligned_cols=188 Identities=18% Similarity=0.234 Sum_probs=162.6
Q ss_pred CCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh---cCCeEEEEcccHH
Q psy6275 36 PDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK---QSQRVIYTTPIKA 111 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~---~~~~vlvl~P~~~ 111 (391)
.+|+.+++++.+.+.+.+.||+ ||++|+++||.++.|+|++++||||||||++|++|+++.+. .+.+++|++||++
T Consensus 12 ~sF~~l~L~~~l~~~L~~~g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKTlayllp~l~~i~~~~~~~~alil~Pt~e 91 (218)
T d2g9na1 12 DSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRE 91 (218)
T ss_dssp CCGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHH
T ss_pred CCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcccchhhhhhhhhhhhheecccccCccEEEEcccch
Confidence 4799999999999999999997 99999999999999999999999999999999999999874 3678999999999
Q ss_pred HHHHHHHHHHHhcc----cceeeeCCccc--------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccc
Q psy6275 112 LSNQKYREFEEQFK----DVGLITGDVTI--------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKE 179 (391)
Q Consensus 112 L~~q~~~~~~~~~~----~v~~~~g~~~~--------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~ 179 (391)
|+.|+++.+..+.. ....+.++... ...++|+|+||+++..++.+....+++++++|+||||.+.+.+
T Consensus 92 L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvV~TP~rl~~~l~~~~~~~~~l~~lVlDEaD~ll~~~ 171 (218)
T d2g9na1 92 LAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRG 171 (218)
T ss_dssp HHHHHHHHHHHHHTTTTCCEEEECC--CCCSTTTSSSSCCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTT
T ss_pred hhhhHHHHHhhhccccceeEEeeecccchhHHHHHHhcCCCEEEEeCChhHHHHHhcCCcccccceEEEeeecchhhcCc
Confidence 99999999999877 23333343322 1357899999999999999888889999999999999999999
Q ss_pred cchhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHHhccccCCCeeEee
Q psy6275 180 RGYVWEETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVY 226 (391)
Q Consensus 180 ~~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~~ 226 (391)
+...+..++..++.++|++++|||+++. +.+++ .+..+|+.+..
T Consensus 172 f~~~~~~Il~~~~~~~Q~il~SAT~~~~v~~~~~---~~l~~pv~i~v 216 (218)
T d2g9na1 172 FKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTK---KFMRDPIRILV 216 (218)
T ss_dssp CHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHH---HHCSSCEEEEC
T ss_pred hHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHH---HHCCCCEEEEE
Confidence 9999999999999999999999999776 44544 45567776653
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1e-33 Score=247.39 Aligned_cols=187 Identities=19% Similarity=0.209 Sum_probs=161.8
Q ss_pred CCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh---cCCeEEEEcccHH
Q psy6275 36 PDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK---QSQRVIYTTPIKA 111 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~---~~~~vlvl~P~~~ 111 (391)
.+|+.++|++.+.+++.++||+ ||++|.++||.++.|+|+++.||||||||++|++|+++.+. .++++++++||++
T Consensus 10 ~sF~~l~l~~~l~~~L~~~g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~a~~lp~i~~l~~~~~~~~~lil~pt~e 89 (212)
T d1qdea_ 10 YKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRE 89 (212)
T ss_dssp CCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHH
T ss_pred cChhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEeecccccchhhhhHhhhHhhhhccCCCcceEEEcccHH
Confidence 5799999999999999999998 99999999999999999999999999999999999999884 3679999999999
Q ss_pred HHHHHHHHHHHhcc----cceeeeCCccc------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccc
Q psy6275 112 LSNQKYREFEEQFK----DVGLITGDVTI------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERG 181 (391)
Q Consensus 112 L~~q~~~~~~~~~~----~v~~~~g~~~~------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~ 181 (391)
|+.|+...+..... .+....++... ..+++|+|+||+++..++......+.+++++|+||||.+++.++.
T Consensus 90 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvI~TP~~l~~~~~~~~~~l~~l~~lVlDEad~lld~~f~ 169 (212)
T d1qdea_ 90 LALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFK 169 (212)
T ss_dssp HHHHHHHHHHHHTTTSCCCEEEECC----------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCH
T ss_pred HhhhhhhhhcccccccccceeeEeeccchhHHHHHhcCCcEEEECCCccccccccCceecCcceEEeehhhhhhcccchH
Confidence 99999999988876 22333343322 235799999999999999999889999999999999999999999
Q ss_pred hhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHHhccccCCCeeEe
Q psy6275 182 YVWEETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVV 225 (391)
Q Consensus 182 ~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~ 225 (391)
..+..+++.++.++|++++|||+++. +.+++. +..+|+.+.
T Consensus 170 ~~v~~I~~~~~~~~Q~vl~SAT~~~~v~~l~~~---~l~~Pv~i~ 211 (212)
T d1qdea_ 170 EQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTK---FMRNPVRIL 211 (212)
T ss_dssp HHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHH---HCSSCEEEC
T ss_pred HHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHH---HCCCCEEEe
Confidence 99999999999999999999999776 556664 455676553
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Probab=100.00 E-value=2.2e-32 Score=243.13 Aligned_cols=188 Identities=17% Similarity=0.174 Sum_probs=161.7
Q ss_pred CCCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh------------cCC
Q psy6275 35 PPDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK------------QSQ 101 (391)
Q Consensus 35 ~~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~------------~~~ 101 (391)
..+|+.+++++.+.+.+.++||+ |+++|.++||.+++|+|+++.||||||||++|++|+++.+. .++
T Consensus 20 ~~~F~~l~l~~~l~~~L~~~g~~~pt~iQ~~~ip~il~g~dvvi~a~TGsGKTlayllp~l~~l~~~~~~~~~~~~~~~~ 99 (238)
T d1wrba1 20 IENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYP 99 (238)
T ss_dssp CCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCC
T ss_pred cCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHhhhhhCCCCEEEECCCCCCcceeeHHHHHHHHHhcccccccccCCCCc
Confidence 36899999999999999999998 99999999999999999999999999999999999999873 256
Q ss_pred eEEEEcccHHHHHHHHHHHHHhcc----cceeeeCCccc-------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEe
Q psy6275 102 RVIYTTPIKALSNQKYREFEEQFK----DVGLITGDVTI-------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFD 170 (391)
Q Consensus 102 ~vlvl~P~~~L~~q~~~~~~~~~~----~v~~~~g~~~~-------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViD 170 (391)
+++|++|+++|+.|++..+..... ++..+.|+... ...++|+|+||+++..++......+.+++++|+|
T Consensus 100 ~alil~pt~el~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivV~TP~~l~~~~~~~~~~l~~v~~lViD 179 (238)
T d1wrba1 100 KCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLD 179 (238)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEE
T ss_pred eEEEeccchhhhcchheeeeecccCCCcEEEEEeccchhhHHHhhcccCCceeecCHHHHHhHHccCceeccccceeeee
Confidence 899999999999999999888876 44556665542 3468999999999999999888889999999999
Q ss_pred cccccCccccchhHHHHHHHhC----CCCcEEEEcccCCCh-HHHHHHhccccCCCeeEe
Q psy6275 171 EIHYMRDKERGYVWEETLILLS----DNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVV 225 (391)
Q Consensus 171 E~h~~~~~~~~~~~~~i~~~~~----~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~ 225 (391)
|||.+++.++...+..+++.+. .++|++++|||++.. +.+++ .++.+|+++.
T Consensus 180 EaD~ll~~~f~~~i~~Il~~~~~~~~~~~Q~il~SAT~~~~v~~l~~---~~~~~p~~i~ 236 (238)
T d1wrba1 180 EADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAA---DFLYNYIFMT 236 (238)
T ss_dssp THHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHH---HHCSSCEEEE
T ss_pred hhhhhhhhccHHHHHHHHHHhcCCCCCCCEEEEEeeeCCHHHHHHHH---HHCCCCEEEE
Confidence 9999999889999998888653 357999999999766 55555 4556776654
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=4e-33 Score=243.23 Aligned_cols=186 Identities=20% Similarity=0.223 Sum_probs=159.9
Q ss_pred CCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCC-cEEEEecCCcchHHHHHHHHHHHHh--cCCeEEEEcccHH
Q psy6275 36 PDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQ-SVLVSAHTSAGKTVVAEYAIASSLK--QSQRVIYTTPIKA 111 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~-~~li~apTGsGKT~~~~~~~~~~l~--~~~~vlvl~P~~~ 111 (391)
.+|+++++++.+.+.+.++||+ |+|+|.++||.+.+|+ |+++.||||+|||++|++|+++... .+++++|++||++
T Consensus 4 msf~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~~d~iv~a~TGsGKT~~~~l~~~~~~~~~~~~~~lil~pt~~ 83 (208)
T d1hv8a1 4 MNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRE 83 (208)
T ss_dssp CCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHH
T ss_pred cCHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeeeechhcccccceeecccccccccccCcceEEEeeccc
Confidence 4788999999999999999997 9999999999988775 9999999999999999999988763 4679999999999
Q ss_pred HHHHHHHHHHHhcc----cceeeeCCcccC------CCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccc
Q psy6275 112 LSNQKYREFEEQFK----DVGLITGDVTIN------PSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERG 181 (391)
Q Consensus 112 L~~q~~~~~~~~~~----~v~~~~g~~~~~------~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~ 181 (391)
|+.|+.+.+..+.. .+....|+.... .+++|+|+||+++.+++.++...+++++++|+||||.+.+.++.
T Consensus 84 l~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~IlV~TP~~l~~~l~~~~~~~~~l~~lViDEad~l~~~~~~ 163 (208)
T d1hv8a1 84 LAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFI 163 (208)
T ss_dssp HHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTTTH
T ss_pred cchhhhhhhhhhcccCCeEEEEeeCCCChHHHHHhcCCCCEEEEChHHHHHHHHcCCCCcccCcEEEEEChHHhhcCCCh
Confidence 99999999999876 556677765432 25899999999999999888888999999999999999888888
Q ss_pred hhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHHhccccCCCeeE
Q psy6275 182 YVWEETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHV 224 (391)
Q Consensus 182 ~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v 224 (391)
..+..++..++.++|++++|||+++. .++++ .++.+|..+
T Consensus 164 ~~i~~I~~~~~~~~Q~i~~SAT~~~~v~~~~~---~~l~~~~~I 204 (208)
T d1hv8a1 164 KDVEKILNACNKDKRILLFSATMPREILNLAK---KYMGDYSFI 204 (208)
T ss_dssp HHHHHHHHTSCSSCEEEEECSSCCHHHHHHHH---HHCCSEEEE
T ss_pred HHHHHHHHhCCCCCeEEEEEccCCHHHHHHHH---HHCCCCeEE
Confidence 89999999999999999999999865 44554 344455443
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.98 E-value=3.4e-32 Score=237.05 Aligned_cols=185 Identities=21% Similarity=0.235 Sum_probs=163.2
Q ss_pred CCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh---cCCeEEEEcccHHH
Q psy6275 37 DLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK---QSQRVIYTTPIKAL 112 (391)
Q Consensus 37 ~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~---~~~~vlvl~P~~~L 112 (391)
+|+.++|++.+.+.+++.||. ||++|.++||.+++|+|+++.||||||||++|++|+++.+. .+.++++++|+.++
T Consensus 2 sF~~l~L~~~l~~~L~~~g~~~pt~iQ~~aip~il~g~dvi~~a~tGsGKTlay~lp~i~~~~~~~~~~~~~~~~~~~~~ 81 (206)
T d1s2ma1 2 TFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTREL 81 (206)
T ss_dssp CGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHH
T ss_pred ChHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEecCCcchhhhhhccccccccccccccccceeeccchhh
Confidence 689999999999999999998 99999999999999999999999999999999999999873 46789999999999
Q ss_pred HHHHHHHHHHhcc----cceeeeCCccc-------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccc
Q psy6275 113 SNQKYREFEEQFK----DVGLITGDVTI-------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERG 181 (391)
Q Consensus 113 ~~q~~~~~~~~~~----~v~~~~g~~~~-------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~ 181 (391)
+.+....+..... .+...+|+... ...++|+|+||+++.+++......+.+++++|+||||.|.+.+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~lV~DEaD~l~~~~f~ 161 (206)
T d1s2ma1 82 ALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFK 161 (206)
T ss_dssp HHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHHHH
T ss_pred hhhhhhhhhhcccccCeeEEeecCccchhhHHHHhcccceEEEECCcccccccccceeecccceEEEeechhhhhhhhhH
Confidence 9999998888876 45556676543 457899999999999999988888999999999999999999999
Q ss_pred hhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHHhccccCCCeeE
Q psy6275 182 YVWEETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHV 224 (391)
Q Consensus 182 ~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v 224 (391)
..++.+++.++.++|++++|||+++. ..+++ .++.+|..+
T Consensus 162 ~~v~~I~~~l~~~~Q~il~SATl~~~v~~~~~---~~l~~P~~I 202 (206)
T d1s2ma1 162 TIIEQILSFLPPTHQSLLFSATFPLTVKEFMV---KHLHKPYEI 202 (206)
T ss_dssp HHHHHHHTTSCSSCEEEEEESCCCHHHHHHHH---HHCSSCEEE
T ss_pred HHHHHHHHhCCCCCEEEEEEEeCCHHHHHHHH---HHCCCCEEE
Confidence 99999999999999999999999765 44544 445566554
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.97 E-value=4.2e-31 Score=230.84 Aligned_cols=186 Identities=18% Similarity=0.219 Sum_probs=158.7
Q ss_pred CCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc---CCeEEEEcccHHH
Q psy6275 37 DLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ---SQRVIYTTPIKAL 112 (391)
Q Consensus 37 ~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~---~~~vlvl~P~~~L 112 (391)
.|+.++|++.+.++++++||+ |+++|.+|||.+++|+|+++.||||||||++|++|+++.+.. ....++++|+..+
T Consensus 2 ~F~~l~L~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvii~a~TGSGKTlayllp~l~~~~~~~~~~~~~~~~~~~~~ 81 (209)
T d1q0ua_ 2 QFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTREL 81 (209)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHH
T ss_pred ccccCCcCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCeEeecccccccceeeeeeeccccccccccccccccccccch
Confidence 588999999999999999997 999999999999999999999999999999999999998743 5688999999999
Q ss_pred HHHHHHHHHHhcc--------cceeeeCCcc-------cCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCc
Q psy6275 113 SNQKYREFEEQFK--------DVGLITGDVT-------INPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRD 177 (391)
Q Consensus 113 ~~q~~~~~~~~~~--------~v~~~~g~~~-------~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~ 177 (391)
+.+.+..+..... .+....++.. ....++|+|+||+++..++.+....+.+++++|+||||.+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~TP~~l~~~~~~~~~~~~~l~~lViDEad~ll~ 161 (209)
T d1q0ua_ 82 ATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLD 161 (209)
T ss_dssp HHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHH
T ss_pred hHHHHHHHHhhhccccccccccccccccchhhHHHHHHhccCceEEEecCchhhhhhhhhccccccceEEEEeecccccc
Confidence 9999888776654 1222333332 234689999999999999998888899999999999999999
Q ss_pred cccchhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHHhccccCCCeeEe
Q psy6275 178 KERGYVWEETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVV 225 (391)
Q Consensus 178 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~ 225 (391)
+++...++.++..++++.|++++|||+++. ..+++ .++.+|..+.
T Consensus 162 ~~f~~~v~~I~~~~~~~~Q~il~SATl~~~v~~l~~---~~l~~p~~i~ 207 (209)
T d1q0ua_ 162 MGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLK---KYMENPTFVH 207 (209)
T ss_dssp TTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHH---HHCSSCEEEE
T ss_pred cccHHHHHHHHHHCCCCCEEEEEEccCCHHHHHHHH---HHCCCCEEEE
Confidence 999999999999999999999999999766 55555 4455676654
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.96 E-value=1.3e-29 Score=219.98 Aligned_cols=174 Identities=26% Similarity=0.433 Sum_probs=146.0
Q ss_pred cccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHH
Q psy6275 43 LAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFE 121 (391)
Q Consensus 43 l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~ 121 (391)
+++.+...+++.||+ |+|+|.++++.+.+++++++++|||+|||+++.++++..+..+++++|++|+++|+.|+.+.++
T Consensus 10 ~~~~~~~~l~~~g~~~l~~~Q~~ai~~l~~~~~~il~apTGsGKT~~a~l~i~~~~~~~~~vl~l~P~~~L~~q~~~~~~ 89 (202)
T d2p6ra3 10 ISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYESFK 89 (202)
T ss_dssp HHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCchhHHHHHHHHHHhhccCcceeecccHHHHHHHHHHHH
Confidence 445556677888996 9999999999999999999999999999999999999988889999999999999999999998
Q ss_pred Hhcc---cceeeeCCcccC----CCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHH---h
Q psy6275 122 EQFK---DVGLITGDVTIN----PSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLIL---L 191 (391)
Q Consensus 122 ~~~~---~v~~~~g~~~~~----~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~---~ 191 (391)
++.+ .++...|+.... ....++++||..+...+.+....+..++++|+||+|.+.+..++..++.++.. .
T Consensus 90 ~~~~~~~~v~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~ii~DE~h~~~~~~r~~~~~~~l~~i~~~ 169 (202)
T d2p6ra3 90 KWEKIGLRIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRM 169 (202)
T ss_dssp TTTTTTCCEEEECSSCBCCSSCSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHH
T ss_pred HHhhccccceeeccCcccccccccccceeeeccHHHHHHHhccchhhhhhhhccccHHHHhcccccchHHHHHHHHHHhc
Confidence 8876 455566654432 25789999999999988888888889999999999999877777666655543 4
Q ss_pred CCCCcEEEEcccCCChHHHHHHhcc
Q psy6275 192 SDNVRFVFLSATIPNASQFAQWVSH 216 (391)
Q Consensus 192 ~~~~~~i~~SAT~~~~~~~~~~l~~ 216 (391)
+++.|+++||||+++.+++++|++.
T Consensus 170 ~~~~~~l~lSATl~n~~~~~~~l~~ 194 (202)
T d2p6ra3 170 NKALRVIGLSATAPNVTEIAEWLDA 194 (202)
T ss_dssp CTTCEEEEEECCCTTHHHHHHHTTC
T ss_pred CCCCcEEEEcCCCCcHHHHHHHcCC
Confidence 5789999999999999999999863
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=3.2e-26 Score=199.09 Aligned_cols=173 Identities=15% Similarity=0.149 Sum_probs=131.5
Q ss_pred cccccccccCCCCccC-CCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHH
Q psy6275 39 EYQPLAQSKEKPAREY-PFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQK 116 (391)
Q Consensus 39 ~~~~l~~~~~~~~~~~-~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~ 116 (391)
+.++|++...+.+++. ||+ |+|+|.++++++.+|+|+++++|||+|||++|.+|++. ...++++++|+++|+.|+
T Consensus 5 e~~~l~~~~~~~l~~~fg~~~~rp~Q~~ai~~~l~g~~vlv~apTGsGKT~~~~~~~~~---~~~~~~~v~P~~~L~~q~ 81 (206)
T d1oywa2 5 EVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALL---LNGLTVVVSPLISLMKDQ 81 (206)
T ss_dssp CCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHH---SSSEEEEECSCHHHHHHH
T ss_pred hhCCCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCCCcchhhhhhhh---ccCceEEeccchhhhhhH
Confidence 3455555555555544 886 99999999999999999999999999999999988765 478999999999999999
Q ss_pred HHHHHHhcccceeeeCCcc-----------cCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHH
Q psy6275 117 YREFEEQFKDVGLITGDVT-----------INPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWE 185 (391)
Q Consensus 117 ~~~~~~~~~~v~~~~g~~~-----------~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~ 185 (391)
.+.++..+.......+... .....+++++||+.+.............++++|+||||++.+++.....+
T Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~~~~~~~~~v~~lviDEaH~~~~~~~~~~~~ 161 (206)
T d1oywa2 82 VDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPE 161 (206)
T ss_dssp HHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHH
T ss_pred HHHHHhhcccccccccccccccchhHHHHHhcCCceEEEEechhhhchhhcccchhheeeeeeeeeeeeeeccccchHHH
Confidence 9999988764433322211 12357899999998765444444456789999999999998776544332
Q ss_pred -----HHHHHhCCCCcEEEEcccCCCh--HHHHHHhc
Q psy6275 186 -----ETLILLSDNVRFVFLSATIPNA--SQFAQWVS 215 (391)
Q Consensus 186 -----~i~~~~~~~~~~i~~SAT~~~~--~~~~~~l~ 215 (391)
.+...+ ++.|+++||||+++. +++.++++
T Consensus 162 ~~~~~~l~~~~-~~~~ii~lSATl~~~v~~di~~~L~ 197 (206)
T d1oywa2 162 YAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLG 197 (206)
T ss_dssp HHGGGGHHHHC-TTSCEEEEESCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhC-CCCceEEEEeCCCHHHHHHHHHHcC
Confidence 233333 469999999999775 56888875
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.92 E-value=1.9e-24 Score=186.75 Aligned_cols=163 Identities=18% Similarity=0.221 Sum_probs=125.5
Q ss_pred cCCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHH-hcCCeEEEEcccHHHHHHHHHHHHHhcc----cc
Q psy6275 53 EYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSL-KQSQRVIYTTPIKALSNQKYREFEEQFK----DV 127 (391)
Q Consensus 53 ~~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l-~~~~~vlvl~P~~~L~~q~~~~~~~~~~----~v 127 (391)
...++|+++|.+++..+. ++|+++++|||+|||+++++++...+ ..+.+++|++|+++|+.|+++.+.+++. .+
T Consensus 5 ~~~~~pr~~Q~~~~~~~~-~~n~lv~~pTGsGKT~i~~~~~~~~~~~~~~~il~i~P~~~L~~q~~~~~~~~~~~~~~~v 83 (200)
T d1wp9a1 5 RDLIQPRIYQEVIYAKCK-ETNCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKI 83 (200)
T ss_dssp HHHHCCCHHHHHHHHHGG-GSCEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGE
T ss_pred cCCCCCCHHHHHHHHHHh-cCCeEEEeCCCCcHHHHHHHHHHHHHHhcCCcEEEEcCchHHHHHHHHHHHHhhcccccce
Confidence 334579999999998875 56799999999999999887776554 4578899999999999999999999986 34
Q ss_pred eeeeCCcccC------CCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEc
Q psy6275 128 GLITGDVTIN------PSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLS 201 (391)
Q Consensus 128 ~~~~g~~~~~------~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 201 (391)
...+++.... .+.+++++||+.+...+......+.+++++|+||||++........+.........+.++++||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~vIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~l~~S 163 (200)
T d1wp9a1 84 VALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLT 163 (200)
T ss_dssp EEECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEE
T ss_pred eeeecccchhHHHHhhhcccccccccchhHHHHhhhhhhccccceEEEEehhhhhcchhHHHHHHHHHhcCCCCcEEEEE
Confidence 4445543321 2468999999999998888877888999999999999876533333333333445678999999
Q ss_pred ccCCCh-HHHHHHhcc
Q psy6275 202 ATIPNA-SQFAQWVSH 216 (391)
Q Consensus 202 AT~~~~-~~~~~~l~~ 216 (391)
||++.. ..+.+++..
T Consensus 164 ATp~~~~~~~~~~~~~ 179 (200)
T d1wp9a1 164 ASPGSTPEKIMEVINN 179 (200)
T ss_dssp SCSCSSHHHHHHHHHH
T ss_pred ecCCCcHHHHHHHHhc
Confidence 998764 556665543
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.92 E-value=6.1e-25 Score=195.09 Aligned_cols=147 Identities=16% Similarity=0.085 Sum_probs=115.0
Q ss_pred CC-CCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccc----ee
Q psy6275 55 PF-VLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDV----GL 129 (391)
Q Consensus 55 ~~-~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v----~~ 129 (391)
++ +|+++|+++++.++.|++++++||||+|||++++++++.....+.+++|++|+++|+.|+++++++++... ..
T Consensus 40 ~~~~p~~~Q~~~i~~~l~g~~~~i~apTGsGKT~~~~~~~~~~~~~~~rvliv~Pt~~La~Q~~~~l~~~~~~~~~~~~~ 119 (237)
T d1gkub1 40 CVGEPRAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTEN 119 (237)
T ss_dssp TTCSCCHHHHHHHHHHHTTCCEECCCCBTSCSHHHHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGG
T ss_pred ccCCCCHHHHHHHHHHHCCCCEEEEecCCChHHHHHHHHHHHHHHhcCeEEEEeccHHHHHHHHHHHHHHHHHcCCceEE
Confidence 44 59999999999999999999999999999999999999888889999999999999999999999987622 22
Q ss_pred ----eeCCccc---------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHh-----
Q psy6275 130 ----ITGDVTI---------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILL----- 191 (391)
Q Consensus 130 ----~~g~~~~---------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~----- 191 (391)
..++... ...++|+|+||+++.+. ...+++++++|+||+|.+++.+ ..+..+...+
T Consensus 120 ~~~~~~~~~~~~~~~~~l~~~~~~~Ilv~Tp~~l~~~----~~~~~~~~~vVvDE~d~~l~~~--~~~~~~~~~~g~~~~ 193 (237)
T d1gkub1 120 LIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKH----YRELGHFDFIFVDDVDAILKAS--KNVDKLLHLLGFHYD 193 (237)
T ss_dssp SEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHC----STTSCCCSEEEESCHHHHHTST--HHHHHHHHHTTEEEE
T ss_pred EEeeeecccchhhhhhhhccccccceeccChHHHHHh----hhhcCCCCEEEEEChhhhhhcc--cchhHHHHhcCChHH
Confidence 2222211 12468999999987543 3346789999999999987653 3333333332
Q ss_pred --------CCCCcEEEEcccCCCh
Q psy6275 192 --------SDNVRFVFLSATIPNA 207 (391)
Q Consensus 192 --------~~~~~~i~~SAT~~~~ 207 (391)
+...|++++|||+++.
T Consensus 194 ~~~~~~~~~~~~~~i~~SAT~~~~ 217 (237)
T d1gkub1 194 LKTKSWVGEARGCLMVSTATAKKG 217 (237)
T ss_dssp TTTTEEEECCSSEEEECCCCSCCC
T ss_pred HHHHHhhCCCCCeEEEEeCCCCcc
Confidence 3567899999999764
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=99.91 E-value=3.9e-25 Score=203.54 Aligned_cols=136 Identities=15% Similarity=0.138 Sum_probs=99.4
Q ss_pred HhcCCcEEEEecCCcchHHHHHHHHHH-HHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcH
Q psy6275 69 IENNQSVLVSAHTSAGKTVVAEYAIAS-SLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTT 147 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~~~~~~~-~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp 147 (391)
+.+++++++.||||||||++|+.+++. .+.++.+++|++|+++|+.|+++.++....................++++|+
T Consensus 6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~~~~~~~lvi~Ptr~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~t~ 85 (305)
T d2bmfa2 6 FRKKRLTIMDLHPGAGKTKRYLPAIVREAIKRGLRTLILAPTRVVAAEMEEALRGLPIRYQTPAIRAEHTGREIVDLMCH 85 (305)
T ss_dssp SSTTCEEEECCCTTSSTTTTHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHTTTSCCBCCC--------CCCSEEEEEH
T ss_pred hhcCCcEEEEECCCCCHHHHHHHHHHHHHHhcCCEEEEEccHHHHHHHHHHHHhcCCcceeeeEEeecccCccccccCCc
Confidence 457899999999999999988777765 4567889999999999999999988877654444333444456678999999
Q ss_pred HHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHH--hCCCCcEEEEcccCCCh
Q psy6275 148 EILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLIL--LSDNVRFVFLSATIPNA 207 (391)
Q Consensus 148 ~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~--~~~~~~~i~~SAT~~~~ 207 (391)
+.+..+... ...+.+++++|+||+|++.++++ ....++.. .....+++++|||++..
T Consensus 86 ~~l~~~~~~-~~~~~~~~~vViDE~H~~~~~~~--~~~~~l~~~~~~~~~~~v~~SAT~~~~ 144 (305)
T d2bmfa2 86 ATFTMRLLS-PIRVPNYNLIIMDEAHFTDPASI--AARGYISTRVEMGEAAGIFMTATPPGS 144 (305)
T ss_dssp HHHHHHHTS-SSCCCCCSEEEEESTTCCSHHHH--HHHHHHHHHHHHTSCEEEEECSSCTTC
T ss_pred HHHHHHHhc-CccccceeEEEeeeeeecchhhH--HHHHHHHHhhccccceEEEeecCCCcc
Confidence 988776654 44578999999999999876532 22222322 23568999999998654
|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.81 E-value=2.4e-19 Score=154.97 Aligned_cols=139 Identities=20% Similarity=0.150 Sum_probs=107.1
Q ss_pred cCCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc-cceeee
Q psy6275 53 EYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK-DVGLIT 131 (391)
Q Consensus 53 ~~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~-~v~~~~ 131 (391)
...++|+++|.+++..+.++++.++.+|||+|||++++..+.+ .+.++||++|+++|+.|+.+.++.+.. .++...
T Consensus 66 ~~~~~Lr~yQ~eav~~~~~~~~~ll~~~tG~GKT~~a~~~~~~---~~~~~Liv~p~~~L~~q~~~~~~~~~~~~~~~~~ 142 (206)
T d2fz4a1 66 DAEISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINE---LSTPTLIVVPTLALAEQWKERLGIFGEEYVGEFS 142 (206)
T ss_dssp CCCCCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHH---SCSCEEEEESSHHHHHHHHHHHGGGCGGGEEEES
T ss_pred CCCCCcCHHHHHHHHHHHhCCCcEEEeCCCCCceehHHhHHHH---hcCceeEEEcccchHHHHHHHHHhhcccchhhcc
Confidence 3456899999999999998889999999999999987655533 267899999999999999999988766 344554
Q ss_pred CCcccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEcccC
Q psy6275 132 GDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATI 204 (391)
Q Consensus 132 g~~~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 204 (391)
|+. ....+++++|++.+...... ....+++||+||||++.. ..+..++..++ ....++||||+
T Consensus 143 ~~~--~~~~~i~i~t~~~~~~~~~~---~~~~~~lvIiDEaH~~~a----~~~~~i~~~~~-~~~~lgLTATl 205 (206)
T d2fz4a1 143 GRI--KELKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPA----ESYVQIAQMSI-APFRLGLTATF 205 (206)
T ss_dssp SSC--BCCCSEEEEEHHHHHHTHHH---HTTTCSEEEEECSSCCCT----TTHHHHHHTCC-CSEEEEEEESC
T ss_pred ccc--ccccccccceehhhhhhhHh---hCCcCCEEEEECCeeCCc----HHHHHHHhccC-CCcEEEEecCC
Confidence 433 33567999999987654432 245789999999999853 34555665553 45678999998
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=99.81 E-value=3.9e-20 Score=149.37 Aligned_cols=134 Identities=13% Similarity=0.115 Sum_probs=96.8
Q ss_pred HhcCCcEEEEecCCcchHHHHHHHHHHH-HhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcH
Q psy6275 69 IENNQSVLVSAHTSAGKTVVAEYAIASS-LKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTT 147 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~~~~~~~~-l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp 147 (391)
+.+|+++++++|||+|||.+++.+++.. ...+.++++++|++++++|.++.+......+....+.........+.+.|.
T Consensus 4 l~~~~~~il~~~tGsGKT~~~~~~~~~~~~~~~~~vli~~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGLDVKFHTQAFSAHGSGREVIDAMCH 83 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSCEEEESSCCCCCCCSSCCEEEEEH
T ss_pred HHcCCcEEEEcCCCCChhHHHHHHHHHHhhhcCceeeeeecchhHHHHHHHHhhhhhhhhcccccccccccccchhhhhH
Confidence 4578999999999999998887665544 456789999999999999998877655444443444444445667888888
Q ss_pred HHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHH--hCCCCcEEEEcccCC
Q psy6275 148 EILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLIL--LSDNVRFVFLSATIP 205 (391)
Q Consensus 148 ~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~--~~~~~~~i~~SAT~~ 205 (391)
..+...... ...+.+++++|+||||++...+.. ....+.. ...+.++++||||+|
T Consensus 84 ~~l~~~~~~-~~~~~~~~lvIiDEaH~~~~~~~~--~~~~~~~~~~~~~~~~l~lTATPp 140 (140)
T d1yksa1 84 ATLTYRMLE-PTRVVNWEVIIMDEAHFLDPASIA--ARGWAAHRARANESATILMTATPP 140 (140)
T ss_dssp HHHHHHHTS-SSCCCCCSEEEETTTTCCSHHHHH--HHHHHHHHHHTTSCEEEEECSSCT
T ss_pred HHHHHHHhc-cccccceeEEEEccccccChhhHH--HHHHHHHHhhCCCCCEEEEEcCCC
Confidence 887765543 445779999999999987543222 2222222 245799999999996
|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: DNA helicase UvsW domain: DNA helicase UvsW species: Bacteriophage T4 [TaxId: 10665]
Probab=99.81 E-value=1.4e-19 Score=163.60 Aligned_cols=146 Identities=18% Similarity=0.199 Sum_probs=111.3
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHH-hcCCeEEEEcccHHHHHHHHHHHHHhcc----ccee
Q psy6275 55 PFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSL-KQSQRVIYTTPIKALSNQKYREFEEQFK----DVGL 129 (391)
Q Consensus 55 ~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l-~~~~~vlvl~P~~~L~~q~~~~~~~~~~----~v~~ 129 (391)
.++|+++|.+|+..+.++++.++.+|||+|||+++...+.... ..+.++||++|+++|+.|+++.+.+++. .+..
T Consensus 111 ~~~~rdyQ~~av~~~l~~~~~il~~pTGsGKT~i~~~i~~~~~~~~~~k~Liivp~~~Lv~Q~~~~f~~~~~~~~~~~~~ 190 (282)
T d1rifa_ 111 RIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKK 190 (282)
T ss_dssp ECCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEE
T ss_pred ccccchHHHHHHHHHHhcCCceeEEEcccCccHHHHHHHHHhhhcccceEEEEEcCchhHHHHHHHHHHhhcccccccee
Confidence 5689999999999988888899999999999998765554433 3467999999999999999999998875 2333
Q ss_pred eeCCccc----CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEcccCC
Q psy6275 130 ITGDVTI----NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIP 205 (391)
Q Consensus 130 ~~g~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 205 (391)
..++... .....++++|++.+.. .....++++++||+||||++. +..+..++..+......++||||++
T Consensus 191 ~~~g~~~~~~~~~~~~i~i~t~qs~~~---~~~~~~~~f~~VIvDEaH~~~----a~~~~~il~~~~~~~~rlGlTaT~~ 263 (282)
T d1rifa_ 191 IGGGASKDDKYKNDAPVVVGTWQTVVK---QPKEWFSQFGMMMNDECHLAT----GKSISSIISGLNNCMFKFGLSGSLR 263 (282)
T ss_dssp CSTTCSSTTCCCTTCSEEEECHHHHTT---SCGGGGGGEEEEEEETGGGCC----HHHHHHHTTTCTTCCEEEEECSSCC
T ss_pred ecceecccccccccceEEEEeeehhhh---hcccccCCCCEEEEECCCCCC----chhHHHHHHhccCCCeEEEEEeecC
Confidence 3343332 2356799999987643 233456789999999999864 4456666666654455699999997
Q ss_pred Ch
Q psy6275 206 NA 207 (391)
Q Consensus 206 ~~ 207 (391)
+.
T Consensus 264 ~~ 265 (282)
T d1rifa_ 264 DG 265 (282)
T ss_dssp TT
T ss_pred CC
Confidence 65
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=99.81 E-value=4.6e-19 Score=154.08 Aligned_cols=151 Identities=25% Similarity=0.324 Sum_probs=123.1
Q ss_pred cCCCCccCCCCCcHHHHHHHHHHh----cC--CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHH
Q psy6275 47 KEKPAREYPFVLDPFQKEAILCIE----NN--QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREF 120 (391)
Q Consensus 47 ~~~~~~~~~~~~~~~Q~~~i~~i~----~~--~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~ 120 (391)
.......++|++|+-|.+++..+. ++ .+.+++|.||||||.+|+.++...+.++.++++++|+..|+.|.+..+
T Consensus 45 ~~~~~~~lP~~lt~~Q~~~~~~i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a~~~~~~~g~qv~~l~Pt~~La~Q~~~~~ 124 (233)
T d2eyqa3 45 YQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNF 124 (233)
T ss_dssp HHHHHHTCCSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHH
T ss_pred HHhhhhccccccchhHHHHHHHHHHHHhccCccCeEEEcCCCCCcHHHHHHHHHHHHHcCCceEEEccHHHhHHHHHHHH
Confidence 344556778999999999998763 33 478999999999999999999999999999999999999999999999
Q ss_pred HHhcc----cceeeeCCccc-----------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHH
Q psy6275 121 EEQFK----DVGLITGDVTI-----------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWE 185 (391)
Q Consensus 121 ~~~~~----~v~~~~g~~~~-----------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~ 185 (391)
++.+. .+.+++|.... +.+.+|+|+|...+. ....+++++++|+||-|.. +...+
T Consensus 125 ~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~g~~~iviGths~l~-----~~~~f~~LgLiIiDEeH~f-----g~kQ~ 194 (233)
T d2eyqa3 125 RDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLLIVDEEHRF-----GVRHK 194 (233)
T ss_dssp HHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEEEEESGGGS-----CHHHH
T ss_pred HHHHhhCCCEEEeccCcccchhHHHHHHHHhCCCCCEEEeehhhhc-----cCCccccccceeeechhhh-----hhHHH
Confidence 99876 56667886653 346899999997553 3345789999999999964 55555
Q ss_pred HHHHHhCCCCcEEEEcccCCCh
Q psy6275 186 ETLILLSDNVRFVFLSATIPNA 207 (391)
Q Consensus 186 ~i~~~~~~~~~~i~~SAT~~~~ 207 (391)
..+.....++.++++|||+...
T Consensus 195 ~~l~~~~~~~~~l~~SATPipr 216 (233)
T d2eyqa3 195 ERIKAMRANVDILTLTATPIPR 216 (233)
T ss_dssp HHHHHHHTTSEEEEEESSCCCH
T ss_pred HHHHhhCCCCCEEEEecchhHH
Confidence 5566566678999999998554
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.79 E-value=1.7e-19 Score=159.73 Aligned_cols=150 Identities=29% Similarity=0.345 Sum_probs=118.4
Q ss_pred CCCCccCCCCCcHHHHHHHHHHhc------CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHH
Q psy6275 48 EKPAREYPFVLDPFQKEAILCIEN------NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFE 121 (391)
Q Consensus 48 ~~~~~~~~~~~~~~Q~~~i~~i~~------~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~ 121 (391)
....+.++|++|+-|.+|+..+.+ ..+.++.|.||||||.+|+.++...+..+.++++++||..|+.|.+..++
T Consensus 74 ~~f~~~LPFeLT~~Q~~ai~ei~~d~~~~~~m~rLL~GdvGSGKT~Va~~a~~~~~~~g~q~~~m~Pt~~La~Qh~~~~~ 153 (264)
T d1gm5a3 74 EEFIKSLPFKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTV 153 (264)
T ss_dssp HHHHHHSSSCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHH
T ss_pred HHHHhhccccCCchHHHHHHHHHHHhhccCcceeeeeccccccccHHHHHHHHHHHhcccceeEEeehHhhhHHHHHHHH
Confidence 345677899999999999998732 24789999999999999999999999999999999999999999999999
Q ss_pred Hhcc----cceeeeCCccc-----------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHH
Q psy6275 122 EQFK----DVGLITGDVTI-----------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEE 186 (391)
Q Consensus 122 ~~~~----~v~~~~g~~~~-----------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~ 186 (391)
++++ .+.+++|+... +.+.+|+|||..-+. ....+++++++|+||-|...- .-+.
T Consensus 154 ~~f~~~~~~v~~l~~~~~~~~r~~~~~~~~~g~~~iiIGThsl~~-----~~~~f~~LglviiDEqH~fgv-----~Qr~ 223 (264)
T d1gm5a3 154 ESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQ-----EDVHFKNLGLVIIDEQHRFGV-----KQRE 223 (264)
T ss_dssp HHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHH-----HCCCCSCCCEEEEESCCCC----------C
T ss_pred HhhhhccccceeeccccchHHHHHHHHHHHCCCCCEEEeehHHhc-----CCCCccccceeeeccccccch-----hhHH
Confidence 9996 56678887663 457899999996543 233467999999999997633 2222
Q ss_pred HHHHhCCCCcEEEEcccCCCh
Q psy6275 187 TLILLSDNVRFVFLSATIPNA 207 (391)
Q Consensus 187 i~~~~~~~~~~i~~SAT~~~~ 207 (391)
.+..-..++.+++||||+-..
T Consensus 224 ~l~~~~~~~~~l~~SATPipr 244 (264)
T d1gm5a3 224 ALMNKGKMVDTLVMSATPIPR 244 (264)
T ss_dssp CCCSSSSCCCEEEEESSCCCH
T ss_pred HHHHhCcCCCEEEEECCCCHH
Confidence 222334568899999997544
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.77 E-value=1.8e-18 Score=139.23 Aligned_cols=127 Identities=20% Similarity=0.071 Sum_probs=96.0
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc-cceeeeCCcccCCCCCEEEEcHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK-DVGLITGDVTINPSSSCLIMTTEI 149 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~-~v~~~~g~~~~~~~~~I~v~Tp~~ 149 (391)
+.+..++.+|||+|||+.+...+ ...+.+++|++|+++|++|+.+.+.+.+. ..+...++........+.++|.+.
T Consensus 7 ~~~~~ll~apTGsGKT~~~~~~~---~~~~~~vli~~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (136)
T d1a1va1 7 SFQVAHLHAPTGSGKSTKVPAAY---AAQGYKVLVLNPSVAATLGFGAYMSKAHGVDPNIRTGVRTITTGSPITYSTYGK 83 (136)
T ss_dssp SCEEEEEECCTTSCTTTHHHHHH---HTTTCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCEECCCCSEEEEEHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHH---HHcCCcEEEEcChHHHHHHHHHHHHHHhhccccccccccccccccceEEEeeee
Confidence 35678999999999998754433 34588999999999999999999998876 555566666666778899999987
Q ss_pred HHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhC--CCCcEEEEcccC
Q psy6275 150 LRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLS--DNVRFVFLSATI 204 (391)
Q Consensus 150 l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~--~~~~~i~~SAT~ 204 (391)
.... ....+++++++|+||+|++... ....+..++..+. .+.++++||||+
T Consensus 84 ~~~~---~~~~~~~~~~vIiDE~H~~~~~-~~~~~~~~l~~~~~~~~~~~l~~TATP 136 (136)
T d1a1va1 84 FLAD---GGCSGGAYDIIICDECHSTDAT-SILGIGTVLDQAETAGARLVVLATATP 136 (136)
T ss_dssp HHHT---TGGGGCCCSEEEEETTTCCSHH-HHHHHHHHHHHTTTTTCSEEEEEESSC
T ss_pred eccc---cchhhhcCCEEEEecccccCHH-HHHHHHHHHHHHHHCCCCcEEEEeCCC
Confidence 6543 3445779999999999987432 2233445555543 456899999996
|
| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=99.26 E-value=8.1e-11 Score=106.45 Aligned_cols=145 Identities=26% Similarity=0.267 Sum_probs=97.1
Q ss_pred CCcHHHHHHHHHHh---------cCCcEEEEecCCcchHHHHHHHHHHHHhc-------CCeEEEEcccHHHHHHHHHHH
Q psy6275 57 VLDPFQKEAILCIE---------NNQSVLVSAHTSAGKTVVAEYAIASSLKQ-------SQRVIYTTPIKALSNQKYREF 120 (391)
Q Consensus 57 ~~~~~Q~~~i~~i~---------~~~~~li~apTGsGKT~~~~~~~~~~l~~-------~~~vlvl~P~~~L~~q~~~~~ 120 (391)
.++|+|.+++..+. .+..+++.=.+|.|||...+..+...+.. ..++||++|. .|..|+.+++
T Consensus 55 ~Lr~hQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~qaia~l~~l~~~~~~~~~~~~~~LIV~P~-sl~~qW~~Ei 133 (298)
T d1z3ix2 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (298)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHHhcccccCCCCcEEEEccc-hhhHHHHHHH
Confidence 48999999998552 34568888899999998765544444432 2469999996 5889999999
Q ss_pred HHhcc---cceeeeCCcc---------------cCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccch
Q psy6275 121 EEQFK---DVGLITGDVT---------------INPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGY 182 (391)
Q Consensus 121 ~~~~~---~v~~~~g~~~---------------~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~ 182 (391)
.+++. .+..++|+.. .....+++++|++.+......- .-.+++++|+||+|.+... ..
T Consensus 134 ~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~sy~~~~~~~~~l--~~~~~~~vI~DEaH~ikn~--~s 209 (298)
T d1z3ix2 134 GKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVL--HKGKVGLVICDEGHRLKNS--DN 209 (298)
T ss_dssp HHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTTT--TTSCCCEEEETTGGGCCTT--CH
T ss_pred HhhcCCceeEEEEeCchHHHHHHHHHHhhhccCccccceEEEEeecccccchhcc--cccceeeeecccccccccc--cc
Confidence 98876 2223444322 1124579999999876543321 1236789999999998654 22
Q ss_pred hHHHHHHHhCCCCcEEEEcccCCCh
Q psy6275 183 VWEETLILLSDNVRFVFLSATIPNA 207 (391)
Q Consensus 183 ~~~~i~~~~~~~~~~i~~SAT~~~~ 207 (391)
.....+..+. ....+++|||+-..
T Consensus 210 ~~~~a~~~l~-~~~rllLTGTPi~N 233 (298)
T d1z3ix2 210 QTYLALNSMN-AQRRVLISGTPIQN 233 (298)
T ss_dssp HHHHHHHHHC-CSEEEEECSSCSGG
T ss_pred hhhhhhhccc-cceeeeecchHHhh
Confidence 3333344443 35678999998543
|
| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.24 E-value=7.1e-11 Score=102.68 Aligned_cols=152 Identities=12% Similarity=0.102 Sum_probs=100.1
Q ss_pred CCcHHHHHHHHHH----hcCCcEEEEecCCcchHHHHHHHHHHHHhc--CCeEEEEcccHHHHHHHHHHHHHhcccceee
Q psy6275 57 VLDPFQKEAILCI----ENNQSVLVSAHTSAGKTVVAEYAIASSLKQ--SQRVIYTTPIKALSNQKYREFEEQFKDVGLI 130 (391)
Q Consensus 57 ~~~~~Q~~~i~~i----~~~~~~li~apTGsGKT~~~~~~~~~~l~~--~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~ 130 (391)
+++|+|.+++..+ ..+..+++.-++|.|||...+..+...... ..++||++| ..+..|+.+++.++.......
T Consensus 12 ~L~~yQ~~~v~~~~~~~~~~~g~iLaDe~GlGKT~~~i~~~~~~~~~~~~~~~LIv~p-~~l~~~W~~e~~~~~~~~~~~ 90 (230)
T d1z63a1 12 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICP-LSVLKNWEEELSKFAPHLRFA 90 (230)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEEC-STTHHHHHHHHHHHCTTSCEE
T ss_pred chhHHHHHHHHHHHHhhhcCCCEEEEeCCCCChHHHHHHhhhhhhhcccccccceecc-hhhhhHHHHHHHhhcccccce
Confidence 4899999999754 345568899999999999876555444433 368999999 777788999998887633222
Q ss_pred e--CCcc--cCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEcccCCC
Q psy6275 131 T--GDVT--INPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPN 206 (391)
Q Consensus 131 ~--g~~~--~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 206 (391)
. +... ...+.++++++++.+..... ..--.++++|+||+|.+... .......+..+. ....+++|||+-.
T Consensus 91 ~~~~~~~~~~~~~~~vvi~~~~~~~~~~~---l~~~~~~~vI~DEah~~k~~--~s~~~~~~~~l~-a~~r~~LTgTPi~ 164 (230)
T d1z63a1 91 VFHEDRSKIKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNP--QTKIFKAVKELK-SKYRIALTGTPIE 164 (230)
T ss_dssp ECSSSTTSCCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCT--TSHHHHHHHTSC-EEEEEEECSSCST
T ss_pred eeccccchhhccCcCEEEeeHHHHHhHHH---HhcccceEEEEEhhhccccc--chhhhhhhhhhc-cceEEEEecchHH
Confidence 2 1111 12356899999987653211 11126789999999998654 222223333343 3457899999865
Q ss_pred h--HHHHHHhc
Q psy6275 207 A--SQFAQWVS 215 (391)
Q Consensus 207 ~--~~~~~~l~ 215 (391)
. .++...+.
T Consensus 165 n~~~dl~~ll~ 175 (230)
T d1z63a1 165 NKVDDLWSIMT 175 (230)
T ss_dssp TCHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 4 55555443
|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.81 E-value=1.5e-09 Score=88.61 Aligned_cols=76 Identities=16% Similarity=0.277 Sum_probs=62.3
Q ss_pred cHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCC--------hHHHHHHHHHHHH-HhhhcchhhccCcchHh
Q psy6275 294 NCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNE--------TEEVKLVDDVFSN-AMDVLSEEDRKLPQIEN 364 (391)
Q Consensus 294 ~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~--------~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~ 364 (391)
+...|.+++......++||||+|+..|+.++..|...|+.+ ..+|..+.+.|+. ...+|++||
T Consensus 14 K~~~L~~ll~~~~~~k~iIF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~l~~f~~~~~~iLv~Td-------- 85 (162)
T d1fuka_ 14 KYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-------- 85 (162)
T ss_dssp HHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG--------
T ss_pred HHHHHHHHHHhCCCCcEEEEEEEEchHHHHHHHHhhcCceEEEeccCCchhhHHHHHHHHhhcccceeeccc--------
Confidence 45567777777778899999999999999999999887664 3678788888877 667888885
Q ss_pred HHHHHHhhhhhccCCC
Q psy6275 365 ILPLLRRGIGIHHGVK 380 (391)
Q Consensus 365 ~~~~l~~GI~~~h~~~ 380 (391)
+++||||++++++
T Consensus 86 ---v~~rGiDi~~v~~ 98 (162)
T d1fuka_ 86 ---LLARGIDVQQVSL 98 (162)
T ss_dssp ---GGTTTCCCCSCSE
T ss_pred ---cccccccCCCceE
Confidence 8999999987643
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.70 E-value=5.5e-09 Score=84.57 Aligned_cols=75 Identities=17% Similarity=0.316 Sum_probs=59.3
Q ss_pred ccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCCh--------HHHHHHHHHHHH-HhhhcchhhccCcchH
Q psy6275 293 TNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNET--------EEVKLVDDVFSN-AMDVLSEEDRKLPQIE 363 (391)
Q Consensus 293 ~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~~--------~~r~~~~~~~~~-~~~~l~~~d~~~~~~~ 363 (391)
+++..|.+++...+ .++||||+|++.|+.+++.|++.|+.+. .+|..+.+.|++ ...+|++||
T Consensus 15 ~K~~~L~~ll~~~~-~k~IIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~~~~~ilv~T~------- 86 (155)
T d1hv8a2 15 ERFEALCRLLKNKE-FYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD------- 86 (155)
T ss_dssp GHHHHHHHHHCSTT-CCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-------
T ss_pred HHHHHHHHHHccCC-CCEEEEECchHHHHHHHhhhcccccccccccccchhhhhhhhhhhhhcccceeeeehh-------
Confidence 34556777665544 5899999999999999999999877653 678888888887 667788775
Q ss_pred hHHHHHHhhhhhccCC
Q psy6275 364 NILPLLRRGIGIHHGV 379 (391)
Q Consensus 364 ~~~~~l~~GI~~~h~~ 379 (391)
++++|||++++.
T Consensus 87 ----~~~~Gid~~~v~ 98 (155)
T d1hv8a2 87 ----VMSRGIDVNDLN 98 (155)
T ss_dssp ----THHHHCCCSCCS
T ss_pred ----HHhhhhhhccCc
Confidence 999999998543
|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.69 E-value=4.8e-09 Score=86.03 Aligned_cols=74 Identities=18% Similarity=0.304 Sum_probs=62.0
Q ss_pred cHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCCh--------HHHHHHHHHHHH-HhhhcchhhccCcchHh
Q psy6275 294 NCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNET--------EEVKLVDDVFSN-AMDVLSEEDRKLPQIEN 364 (391)
Q Consensus 294 ~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~~--------~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~ 364 (391)
++..|.+++......++||||+++..|+.++..|...|+.+. ++|..+...|++ ....|++||
T Consensus 21 K~~~L~~ll~~~~~~k~iiF~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~fk~g~~~iLv~Td-------- 92 (168)
T d2j0sa2 21 KFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD-------- 92 (168)
T ss_dssp HHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG--------
T ss_pred HHHHHHHHHHhCCCCceEEEeeeHHHHHHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHhcCCccEEeccc--------
Confidence 455777777777778999999999999999999999887763 678788888887 578888886
Q ss_pred HHHHHHhhhhhccC
Q psy6275 365 ILPLLRRGIGIHHG 378 (391)
Q Consensus 365 ~~~~l~~GI~~~h~ 378 (391)
+++||||++++
T Consensus 93 ---~~~rGiDi~~v 103 (168)
T d2j0sa2 93 ---VWARGLDVPQV 103 (168)
T ss_dssp ---GGSSSCCCTTE
T ss_pred ---hhcccccccCc
Confidence 89999999753
|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.63 E-value=6.7e-09 Score=85.52 Aligned_cols=75 Identities=23% Similarity=0.315 Sum_probs=62.0
Q ss_pred ccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCCh--------HHHHHHHHHHHH-HhhhcchhhccCcchH
Q psy6275 293 TNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNET--------EEVKLVDDVFSN-AMDVLSEEDRKLPQIE 363 (391)
Q Consensus 293 ~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~~--------~~r~~~~~~~~~-~~~~l~~~d~~~~~~~ 363 (391)
++...|.+++...+..++||||+|++.|+.++..|...|+.+. .+|..+...|+. ....|++||
T Consensus 18 ~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~g~~~~~~h~~~~~~~r~~~~~~f~~~~~~ilv~Td------- 90 (171)
T d1s2ma2 18 QKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD------- 90 (171)
T ss_dssp GHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-------
T ss_pred HHHHHHHHHHHhCCCCceEEEEeeeehhhHhHHhhhcccccccccccccchhhhhhhhhhcccCccccccchh-------
Confidence 4466788888888888999999999999999999998877653 677777777777 667778775
Q ss_pred hHHHHHHhhhhhccC
Q psy6275 364 NILPLLRRGIGIHHG 378 (391)
Q Consensus 364 ~~~~~l~~GI~~~h~ 378 (391)
++++|||++++
T Consensus 91 ----~~~~Gid~~~v 101 (171)
T d1s2ma2 91 ----LLTRGIDIQAV 101 (171)
T ss_dssp ----CSSSSCCCTTE
T ss_pred ----Hhhhcccccee
Confidence 89999999764
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=98.59 E-value=1.4e-07 Score=86.66 Aligned_cols=138 Identities=14% Similarity=0.132 Sum_probs=83.8
Q ss_pred CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHH--HHHH--hcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCC
Q psy6275 58 LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAI--ASSL--KQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGD 133 (391)
Q Consensus 58 ~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~--~~~l--~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~ 133 (391)
..+.|++|+..+..++-+++.||+|+|||++....+ +... ..+.++++++||..-+..+.+........+......
T Consensus 149 ~~~~Q~~A~~~al~~~~~vI~G~pGTGKTt~i~~~l~~l~~~~~~~~~~I~l~ApTgkAA~~L~e~~~~~~~~~~~~~~~ 228 (359)
T d1w36d1 149 EINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQ 228 (359)
T ss_dssp SCCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCCSCC
T ss_pred cccHHHHHHHHHHcCCeEEEEcCCCCCceehHHHHHHHHHHHHhccCCeEEEecCcHHHHHHHHHHHHHHHhhcCchhhh
Confidence 678999999998899999999999999998753322 2222 246789999999998888877765544322211110
Q ss_pred ccc-----CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEc
Q psy6275 134 VTI-----NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLS 201 (391)
Q Consensus 134 ~~~-----~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 201 (391)
... ..-...+-.+++. ..+.........++++|+||+-.+. ...+..++..++...++|++.
T Consensus 229 ~~~~~~~~~t~~~ll~~~~~~--~~~~~~~~~~l~~d~lIIDEaSmv~----~~l~~~ll~~~~~~~~lILvG 295 (359)
T d1w36d1 229 KKRIPEDASTLHRLLGAQPGS--QRLRHHAGNPLHLDVLVVDEASMID----LPMMSRLIDALPDHARVIFLG 295 (359)
T ss_dssp CCSCSCCCBTTTSCC-------------CTTSCCSCSEEEECSGGGCB----HHHHHHHHHTCCTTCEEEEEE
T ss_pred hhhhhhhhhHHHHHHhhhhcc--hHHHHhhhcccccceeeehhhhccC----HHHHHHHHHHhcCCCEEEEEC
Confidence 000 0001111111111 1122223334478999999998763 345667777777777777753
|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=1.8e-08 Score=82.51 Aligned_cols=76 Identities=21% Similarity=0.294 Sum_probs=63.0
Q ss_pred ccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCC--------hHHHHHHHHHHHH-HhhhcchhhccCcchH
Q psy6275 293 TNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNE--------TEEVKLVDDVFSN-AMDVLSEEDRKLPQIE 363 (391)
Q Consensus 293 ~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~--------~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~ 363 (391)
++...|.+++......++||||++++.++.++..|.+.|+.+ .++|..+.+.|++ ...+|++|+
T Consensus 13 ~K~~~L~~ll~~~~~~k~iIF~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~l~~F~~g~~~iLv~T~------- 85 (168)
T d1t5ia_ 13 EKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN------- 85 (168)
T ss_dssp GHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS-------
T ss_pred HHHHHHHHHHHhCCCCeEEEEEeeeecchhhhhhhccccccccccccccchhhhhhhhhhhccccceeeeccc-------
Confidence 456688888888777899999999999999999999987765 3678888887777 667788775
Q ss_pred hHHHHHHhhhhhccCC
Q psy6275 364 NILPLLRRGIGIHHGV 379 (391)
Q Consensus 364 ~~~~~l~~GI~~~h~~ 379 (391)
++++|||++.+.
T Consensus 86 ----~~~~Gid~~~~~ 97 (168)
T d1t5ia_ 86 ----LFGRGMDIERVN 97 (168)
T ss_dssp ----CCSTTCCGGGCS
T ss_pred ----cccchhhcccch
Confidence 889999998654
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=98.54 E-value=1.2e-08 Score=83.33 Aligned_cols=71 Identities=15% Similarity=0.150 Sum_probs=58.6
Q ss_pred HHHHHHHHH--cCCCcEEEEEcchhhHHHHHHHhhccCCCCh--------HHHHHHHHHHHH-HhhhcchhhccCcchHh
Q psy6275 296 FKIVKMIME--RNLAPVIVFSFSKKDCEIYAMQMAKLNFNET--------EEVKLVDDVFSN-AMDVLSEEDRKLPQIEN 364 (391)
Q Consensus 296 ~~l~~~l~~--~~~~~~iIF~~t~~~~~~la~~L~~~g~~~~--------~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~ 364 (391)
..+++.+.+ .+++++||||+|+++|+.++..|.+.|+.+. .+|..+++.|++ .+++|++|+
T Consensus 18 ~dll~~i~~~~~~g~r~lvfc~t~~~~~~l~~~L~~~Gi~a~~~Hg~~~~~eR~~~l~~F~~G~~~vLVaT~-------- 89 (174)
T d1c4oa2 18 LDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN-------- 89 (174)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC--------
T ss_pred HHHHHHHHHHHhcCCcEEEEEcchhHHHHHHHHHHhcCCceEEEecccchHHHHHHHHHHHCCCeEEEEeee--------
Confidence 345555443 3467999999999999999999999988764 788888888888 779999996
Q ss_pred HHHHHHhhhhhcc
Q psy6275 365 ILPLLRRGIGIHH 377 (391)
Q Consensus 365 ~~~~l~~GI~~~h 377 (391)
++++|||++.
T Consensus 90 ---v~~~GiDip~ 99 (174)
T d1c4oa2 90 ---LLREGLDIPE 99 (174)
T ss_dssp ---CCCTTCCCTT
T ss_pred ---eeeeeccCCC
Confidence 9999999975
|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=98.51 E-value=2.9e-08 Score=83.60 Aligned_cols=76 Identities=12% Similarity=0.141 Sum_probs=63.5
Q ss_pred ccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCCh--------HHHHHHHHHHHH-HhhhcchhhccCcchH
Q psy6275 293 TNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNET--------EEVKLVDDVFSN-AMDVLSEEDRKLPQIE 363 (391)
Q Consensus 293 ~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~~--------~~r~~~~~~~~~-~~~~l~~~d~~~~~~~ 363 (391)
+++..|++.+....+.++||||+|++.|+.++..|...|+.+. ++|..+.+.|+. ...+|++||
T Consensus 16 ~k~~~L~~~l~~~~~~~~IIF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ilvaTd------- 88 (200)
T d1oywa3 16 KPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATV------- 88 (200)
T ss_dssp SHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECT-------
T ss_pred cHHHHHHHHHHhcCCCCEEEEEeeehhhHHhhhhhccCCceeEEecCCCcHHHHHHHHHHHhcccceEEEecc-------
Confidence 4566788888888888999999999999999999998877653 678888888877 668888886
Q ss_pred hHHHHHHhhhhhccCC
Q psy6275 364 NILPLLRRGIGIHHGV 379 (391)
Q Consensus 364 ~~~~~l~~GI~~~h~~ 379 (391)
++++|||+++++
T Consensus 89 ----~~~~GiD~p~v~ 100 (200)
T d1oywa3 89 ----AFGMGINKPNVR 100 (200)
T ss_dssp ----TSCTTTCCTTCC
T ss_pred ----hhhhccCCCCCC
Confidence 999999998654
|
| >d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=98.44 E-value=1.9e-06 Score=73.97 Aligned_cols=156 Identities=14% Similarity=0.190 Sum_probs=106.5
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc----ccee
Q psy6275 54 YPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK----DVGL 129 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~----~v~~ 129 (391)
+|..+++.|.-.--.+..|+ +....||=|||+++.+|+.-..-.+..|=|+....-|+..=++++...+. .++.
T Consensus 77 lG~RhyDVQLiGgi~L~~G~--iaem~TGEGKTL~a~l~a~l~al~g~~vhvvTvNdyLA~RDae~m~~iy~~lGlsvg~ 154 (273)
T d1tf5a3 77 TGMFPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGL 154 (273)
T ss_dssp HSCCCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred hceEEehhHHHHHHHHHhhh--heeecCCCcchhHHHHHHHHHHhcCCCceEEecCccccchhhhHHhHHHHHcCCCccc
Confidence 46678888888877777776 89999999999998777655555677788888888898777777776666 5555
Q ss_pred eeCCcccCC-----CCCEEEEcHHHH-HHHHhcC------ccccCccceEEEeccccc-Cccccchh-------------
Q psy6275 130 ITGDVTINP-----SSSCLIMTTEIL-RNMLYRG------SEITREVGWVIFDEIHYM-RDKERGYV------------- 183 (391)
Q Consensus 130 ~~g~~~~~~-----~~~I~v~Tp~~l-~~~l~~~------~~~l~~~~~lViDE~h~~-~~~~~~~~------------- 183 (391)
...+..... .++|+++|...+ .+++... ....+.+.+.|+||+|.+ .|..+.+.
T Consensus 155 ~~~~~~~~~r~~~Y~~di~Ygt~~e~~fDyLrd~~~~~~~~~~~r~~~~aIvDEvDsiliDeartpliisg~~~~~a~it 234 (273)
T d1tf5a3 155 NLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQSMTLATIT 234 (273)
T ss_dssp CCTTSCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEEEEEEEE
T ss_pred cccccCHHHHHHHhhCCceecchhhhhhhhcchhhhcChhhhccCCCCEEEEEcchhhhhhccCCceEeccCccchhhhh
Confidence 544433221 479999998653 3444432 223567999999999976 35444332
Q ss_pred HHHHHHHhCCCCcEEEEcccCCCh-HHHHHHh
Q psy6275 184 WEETLILLSDNVRFVFLSATIPNA-SQFAQWV 214 (391)
Q Consensus 184 ~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l 214 (391)
+.... +.-.++.+||+|.... .++.+.+
T Consensus 235 ~q~~f---~~y~~l~gmtgta~~~~~e~~~iy 263 (273)
T d1tf5a3 235 FQNYF---RMYEKLAGMTGTAKTEEEEFRNIY 263 (273)
T ss_dssp HHHHH---TTSSEEEEEESCCGGGHHHHHHHH
T ss_pred HHHHH---HHHHHHhCCccccHHHHHHHHhcc
Confidence 22222 3335789999997544 5555544
|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.38 E-value=4.2e-08 Score=82.72 Aligned_cols=82 Identities=16% Similarity=0.248 Sum_probs=51.3
Q ss_pred HHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhcchhhccCcchHhHHHHHHhhhh
Q psy6275 295 CFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRGIG 374 (391)
Q Consensus 295 ~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~~~~r~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~GI~ 374 (391)
...++..+...+ +++||||+||+.|+.+|..|.+.......... ....+... ........+.+++.+||+
T Consensus 29 ~~~l~~~~i~~~-~~~LVF~~sRk~~~~~A~~L~~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~L~~~l~~GIa 98 (201)
T d2p6ra4 29 FEELVEECVAEN-GGVLVFESTRRGAEKTAVKLSAITAKYVENEG-LEKAILEE--------NEGEMSRKLAECVRKGAA 98 (201)
T ss_dssp HHHHHHHHHHTT-CCEEEECSSHHHHHHHHHHHHHHHHTTCCCSS-HHHHHHTT--------CCSHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcC-CcEEEEeCCHHHHHHHHHHHHHHHHhhhchhH-HHHHHHHh--------hhhhhhHHHHHHHhccHH
Confidence 334544444443 59999999999999999999864222111100 00111111 111223567889999999
Q ss_pred hccCCCCccccc
Q psy6275 375 IHHGVKPYGLWQ 386 (391)
Q Consensus 375 ~~h~~~~~~~r~ 386 (391)
+||+||+..+|.
T Consensus 99 ~hh~~l~~~~r~ 110 (201)
T d2p6ra4 99 FHHAGLLNGQRR 110 (201)
T ss_dssp EECTTSCHHHHH
T ss_pred HHHHHhhhhhHH
Confidence 999999988875
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=98.34 E-value=7.9e-08 Score=79.33 Aligned_cols=71 Identities=21% Similarity=0.177 Sum_probs=57.7
Q ss_pred HHHHHHHHH--cCCCcEEEEEcchhhHHHHHHHhhccCCCCh--------HHHHHHHHHHHH-HhhhcchhhccCcchHh
Q psy6275 296 FKIVKMIME--RNLAPVIVFSFSKKDCEIYAMQMAKLNFNET--------EEVKLVDDVFSN-AMDVLSEEDRKLPQIEN 364 (391)
Q Consensus 296 ~~l~~~l~~--~~~~~~iIF~~t~~~~~~la~~L~~~g~~~~--------~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~ 364 (391)
..++..+.+ ..+.++||||+++.+++.++..|.+.|+.+. ++|..+++.|++ .+++|++||
T Consensus 18 d~ll~~i~~~~~~~~~~iif~~~~~~~~~~~~~l~~~g~~~~~~hg~~~~~eR~~~l~~Fr~g~~~vLVaTd-------- 89 (181)
T d1t5la2 18 DDLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-------- 89 (181)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHHTSCSEEEESC--------
T ss_pred HHHHHHHHHHHhcCCeEEEEeehhhhhHHHHHHHHhCCcceeEecCCccHHHHHHHHHHHHCCCCCEEEehh--------
Confidence 344444443 2356999999999999999999999888764 778888888888 779999996
Q ss_pred HHHHHHhhhhhcc
Q psy6275 365 ILPLLRRGIGIHH 377 (391)
Q Consensus 365 ~~~~l~~GI~~~h 377 (391)
+++||||++.
T Consensus 90 ---v~~rGiDip~ 99 (181)
T d1t5la2 90 ---LLREGLDIPE 99 (181)
T ss_dssp ---CCSSSCCCTT
T ss_pred ---HHHccCCCCC
Confidence 9999999974
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=97.93 E-value=6.4e-06 Score=73.28 Aligned_cols=67 Identities=22% Similarity=0.234 Sum_probs=53.2
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh----cCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy6275 57 VLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK----QSQRVIYTTPIKALSNQKYREFEEQFK 125 (391)
Q Consensus 57 ~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~----~~~~vlvl~P~~~L~~q~~~~~~~~~~ 125 (391)
+++|-|.+|+.. ...+++|.|+.|||||.+.+.-+...+. ++.+++|+++|+++++.+...+.+..+
T Consensus 1 ~L~~eQ~~av~~--~~~~~lI~g~aGTGKTt~l~~rv~~ll~~~~~~~~~ILvlt~tn~a~~~i~~~~~~~~~ 71 (306)
T d1uaaa1 1 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLG 71 (306)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CcCHHHHHHHhC--CCCCEEEEeeCCccHHHHHHHHHHHHHHhcCCChhHEEEEeCcHHHHHHHHHHHHHhcC
Confidence 378999999964 4567999999999999987654444433 235899999999999999888877654
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=97.66 E-value=5.2e-05 Score=67.70 Aligned_cols=66 Identities=20% Similarity=0.205 Sum_probs=53.7
Q ss_pred CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc----CCeEEEEcccHHHHHHHHHHHHHhcc
Q psy6275 58 LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ----SQRVIYTTPIKALSNQKYREFEEQFK 125 (391)
Q Consensus 58 ~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~----~~~vlvl~P~~~L~~q~~~~~~~~~~ 125 (391)
+++-|.+++.. .+..++|.|+.|||||++.+.-+...+.. +.+++++++++..+.++...+.....
T Consensus 12 L~~eQ~~~v~~--~~g~~lV~g~aGSGKTt~l~~ri~~ll~~~~~~p~~il~lt~t~~aa~~~~~~~~~~~~ 81 (318)
T d1pjra1 12 LNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLG 81 (318)
T ss_dssp SCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHG
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCccHHHHHHHHHHHHHHcCCCCHHHeEeEeccHHHHHHHHHHHHhhcc
Confidence 78999999974 45679999999999999887666555543 24899999999999999988877643
|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.65 E-value=2.8e-06 Score=73.68 Aligned_cols=76 Identities=13% Similarity=0.090 Sum_probs=52.3
Q ss_pred cHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhcc--CCCChHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHH
Q psy6275 294 NCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKL--NFNETEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLR 370 (391)
Q Consensus 294 ~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~--g~~~~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~ 370 (391)
++..+.+++...+ .++||||+|++.|+.+++.|... |-...++|..+.+.|++ .+++|++|.. ..++++
T Consensus 13 ~~~~l~~~l~~~~-~~~iif~~~~~~~~~l~~~l~~~~hg~~~~~~R~~~~~~f~~g~~~vLVaT~a-------~~~v~~ 84 (248)
T d1gkub2 13 SISTLSSILEKLG-TGGIIYARTGEEAEEIYESLKNKFRIGIVTATKKGDYEKFVEGEIDHLIGTAH-------YYGTLV 84 (248)
T ss_dssp CTTTTHHHHTTSC-SCEEEEESSHHHHHHHHHTTTTSSCEEECTTSSSHHHHHHHHTSCSEEEEECC-------------
T ss_pred HHHHHHHHHHHhC-CCEEEEECCHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhCCCeEEEEecc-------ccchhh
Confidence 4456666666544 58999999999999999999874 22233567777777766 7799999932 224899
Q ss_pred hhhhhcc
Q psy6275 371 RGIGIHH 377 (391)
Q Consensus 371 ~GI~~~h 377 (391)
||||+++
T Consensus 85 rGlDip~ 91 (248)
T d1gkub2 85 RGLDLPE 91 (248)
T ss_dssp CCSCCTT
T ss_pred hccCccc
Confidence 9999964
|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=97.52 E-value=6.6e-07 Score=70.20 Aligned_cols=59 Identities=24% Similarity=0.267 Sum_probs=40.8
Q ss_pred cCCCcEEEEEcchhhHHHHHHHhhccCCCChHH-HHHHHHHHH-HHhhhcchhhccCcchHhHHHHHHhhhh
Q psy6275 305 RNLAPVIVFSFSKKDCEIYAMQMAKLNFNETEE-VKLVDDVFS-NAMDVLSEEDRKLPQIENILPLLRRGIG 374 (391)
Q Consensus 305 ~~~~~~iIF~~t~~~~~~la~~L~~~g~~~~~~-r~~~~~~~~-~~~~~l~~~d~~~~~~~~~~~~l~~GI~ 374 (391)
...+++||||+|++.|+.+++.|...|+.+..- +....+.|+ +..++|++| +++++|||
T Consensus 33 ~~~~k~IVFc~t~~~ae~la~~L~~~G~~~~~~H~~~~~~~~~~~~~~vlvaT-----------d~~~~GiD 93 (138)
T d1jr6a_ 33 IKGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTNGDVVVVAT-----------DALMTGFT 93 (138)
T ss_dssp HTTSCEEEECSCHHHHHHHHHHHHHHTCEEEEECTTCCSCCCTTSSCEEEEES-----------SSSCSSSC
T ss_pred cCCCCEEEEeCcHHHHHHHHHHHhccccchhhhhccchhhhhhhhhcceeehh-----------HHHHhccc
Confidence 345699999999999999999999988776410 111111122 245566666 49999996
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=97.39 E-value=0.00021 Score=59.92 Aligned_cols=102 Identities=18% Similarity=0.315 Sum_probs=59.7
Q ss_pred cEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILRNM 153 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l~~~ 153 (391)
.+++.||+|+|||.......-+....+..++++ +...+..+....+... ....+.+
T Consensus 38 ~l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----------------------~~~~~~~- 93 (213)
T d1l8qa2 38 PIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYS-SADDFAQAMVEHLKKG----------------------TINEFRN- 93 (213)
T ss_dssp SEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEE-EHHHHHHHHHHHHHHT----------------------CHHHHHH-
T ss_pred cEEEECCCCCcHHHHHHHHHHHhccCccceEEe-chHHHHHHHHHHHHcc----------------------chhhHHH-
Confidence 389999999999987655554555556666555 5566666555444321 1122222
Q ss_pred HhcCccccCccceEEEecccccCcc-ccchhHHHHHHHh-CCCCcEEEEcccCC
Q psy6275 154 LYRGSEITREVGWVIFDEIHYMRDK-ERGYVWEETLILL-SDNVRFVFLSATIP 205 (391)
Q Consensus 154 l~~~~~~l~~~~~lViDE~h~~~~~-~~~~~~~~i~~~~-~~~~~~i~~SAT~~ 205 (391)
.+...+++++|++|.+... .....+-.++..+ ..+.++++.|...|
T Consensus 94 ------~~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p 141 (213)
T d1l8qa2 94 ------MYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHP 141 (213)
T ss_dssp ------HHHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCG
T ss_pred ------HHhhccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCCcc
Confidence 2347899999999998542 1222233333333 35566666555444
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=97.38 E-value=7.1e-05 Score=65.90 Aligned_cols=68 Identities=18% Similarity=0.278 Sum_probs=53.4
Q ss_pred HHHcCCCcEEEEEcchhhHHHHHHHhhccCCCCh----------------HHHHHHHHHHHH-HhhhcchhhccCcchHh
Q psy6275 302 IMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNET----------------EEVKLVDDVFSN-AMDVLSEEDRKLPQIEN 364 (391)
Q Consensus 302 l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~~----------------~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~ 364 (391)
+......++||||+++..|+.+++.|.+.|+++. .++..+.+.|++ ...+|++|+
T Consensus 156 ~~~~~~~k~iiF~~~~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~F~~g~~~vLv~T~-------- 227 (286)
T d1wp9a2 156 LQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATS-------- 227 (286)
T ss_dssp HHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECG--------
T ss_pred HHhCCCCcEEEEeCcHHhHHHHHHHHHHcCCceEEeeccccccccchhchHHHHHHHHHHHcCCCcEEEEcc--------
Confidence 3445667999999999999999999988766542 256677777777 667888885
Q ss_pred HHHHHHhhhhhccCCC
Q psy6275 365 ILPLLRRGIGIHHGVK 380 (391)
Q Consensus 365 ~~~~l~~GI~~~h~~~ 380 (391)
++++|||++.+++
T Consensus 228 ---~~~~Gld~~~~~~ 240 (286)
T d1wp9a2 228 ---VGEEGLDVPEVDL 240 (286)
T ss_dssp ---GGGGGGGSTTCCE
T ss_pred ---ceeccccCCCCCE
Confidence 8999999986543
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=97.36 E-value=0.00035 Score=58.06 Aligned_cols=122 Identities=11% Similarity=0.066 Sum_probs=68.9
Q ss_pred cEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcc--cHHHHHHHHHHHHHhcc-cceeeeCCcccCCCCCEEEEcHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTP--IKALSNQKYREFEEQFK-DVGLITGDVTINPSSSCLIMTTEIL 150 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P--~~~L~~q~~~~~~~~~~-~v~~~~g~~~~~~~~~I~v~Tp~~l 150 (391)
-++++||||+|||++..-.+.+...++.++.++.. .|.-+.++.+.+.+..+ .+....... .+..+
T Consensus 12 vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~-----------~~~~~ 80 (207)
T d1ls1a2 12 LWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGE-----------SPESI 80 (207)
T ss_dssp EEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTC-----------CHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccchHHHHHHHHHHhcCCccccccccc-----------hhhHH
Confidence 35679999999999875555555566777776653 56777666666666653 221111100 12222
Q ss_pred HHHHhcCccccCccceEEEecccccCcc-ccchhHHHHHHHhCCCCcEEEEcccCCCh
Q psy6275 151 RNMLYRGSEITREVGWVIFDEIHYMRDK-ERGYVWEETLILLSDNVRFVFLSATIPNA 207 (391)
Q Consensus 151 ~~~l~~~~~~l~~~~~lViDE~h~~~~~-~~~~~~~~i~~~~~~~~~~i~~SAT~~~~ 207 (391)
...... ...+++.+++++|=+-+.... ..-..+..+.....+...++.++|+....
T Consensus 81 ~~~~~~-~~~~~~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~ 137 (207)
T d1ls1a2 81 RRRVEE-KARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQE 137 (207)
T ss_dssp HHHHHH-HHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHH
T ss_pred HHHHHH-HHhhccCcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchh
Confidence 111100 012347889999999876422 12222334444555556677788887644
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=97.32 E-value=0.0012 Score=54.70 Aligned_cols=132 Identities=14% Similarity=0.167 Sum_probs=71.1
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEc--ccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTT--PIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEI 149 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~--P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~ 149 (391)
++-++++||||+|||++..-.+......+.++.+++ ..|.-+.++.+.+.+..+ +.+...... . .+..
T Consensus 6 ~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~-i~~~~~~~~----~-----d~~~ 75 (207)
T d1okkd2 6 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLS-IPVIQGPEG----T-----DPAA 75 (207)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTHHHHHHHHHHHHT-CCEECCCTT----C-----CHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeccccccchhhHhhcccccC-ceEEeccCC----c-----cHHH
Confidence 456788999999999987555545555667777665 346777666667766653 211111110 0 1222
Q ss_pred HH-HHHhcCccccCccceEEEecccccCcc-ccchhHHHHHHHh------CCCCcEEEEcccCCCh--HHHHHHhc
Q psy6275 150 LR-NMLYRGSEITREVGWVIFDEIHYMRDK-ERGYVWEETLILL------SDNVRFVFLSATIPNA--SQFAQWVS 215 (391)
Q Consensus 150 l~-~~l~~~~~~l~~~~~lViDE~h~~~~~-~~~~~~~~i~~~~------~~~~~~i~~SAT~~~~--~~~~~~l~ 215 (391)
+. +.... ...++.+++++|=+-+.... ..-..+..+.... .+...++.++||.... .....++.
T Consensus 76 ~~~~~~~~--~~~~~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~ 149 (207)
T d1okkd2 76 LAYDAVQA--MKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHE 149 (207)
T ss_dssp HHHHHHHH--HHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHH
T ss_pred HHHHHHHH--HHHCCCCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhh
Confidence 21 11110 11336799999999876422 1112222222222 2234467789998665 44444443
|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.32 E-value=3.5e-05 Score=64.19 Aligned_cols=77 Identities=12% Similarity=0.156 Sum_probs=61.4
Q ss_pred ccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCC---CChHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHH
Q psy6275 293 TNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNF---NETEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPL 368 (391)
Q Consensus 293 ~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~---~~~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~ 368 (391)
+++..+.+++.+..+.++||||++...++.+++.|....+ ...++|+.+.+.|++ ..++|++++ +
T Consensus 79 ~K~~~l~~ll~~~~~~k~lvf~~~~~~~~~l~~~l~~~~i~g~~~~~~R~~~l~~F~~~~~~vLv~~~-----------~ 147 (200)
T d2fwra1 79 NKIRKLREILERHRKDKIIIFTRHNELVYRISKVFLIPAITHRTSREEREEILEGFRTGRFRAIVSSQ-----------V 147 (200)
T ss_dssp HHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTTCCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSS-----------C
T ss_pred HHHHHHHHHHHhCCCCcEEEEeCcHHHHHHHHhhcCcceeeCCCCHHHHHHHHHHhhcCCeeeeeecc-----------h
Confidence 4566777888887788999999999999999999976533 344788888888887 667777774 7
Q ss_pred HHhhhhhccCCC
Q psy6275 369 LRRGIGIHHGVK 380 (391)
Q Consensus 369 l~~GI~~~h~~~ 380 (391)
++.|||++.++.
T Consensus 148 ~~~Gidl~~~~~ 159 (200)
T d2fwra1 148 LDEGIDVPDANV 159 (200)
T ss_dssp CCSSSCSCCBSE
T ss_pred hhcccCCCCCCE
Confidence 889999987654
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=97.22 E-value=0.0019 Score=53.51 Aligned_cols=121 Identities=11% Similarity=0.154 Sum_probs=65.2
Q ss_pred EEEEecCCcchHHHHHHHHHHHHhcCCeEEEEc--ccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHHH-
Q psy6275 75 VLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTT--PIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILR- 151 (391)
Q Consensus 75 ~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~--P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l~- 151 (391)
++++||||+|||++..-.+.+...++.++.+++ ..|.-+.++.+.+.+..+ +.+....... .+..++
T Consensus 12 i~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~-v~~~~~~~~~---------d~~~~l~ 81 (211)
T d2qy9a2 12 ILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNN-IPVIAQHTGA---------DSASVIF 81 (211)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTCHHHHHHHHHHHHHTT-CCEECCSTTC---------CHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccccchhhhhhhhhhcC-CcccccccCC---------CHHHHHH
Confidence 668999999999987655544445666776665 236666666666666553 2222111110 122222
Q ss_pred HHHhcCccccCccceEEEecccccCcc-ccchhHHHHHHHhC------CCCcEEEEcccCCCh
Q psy6275 152 NMLYRGSEITREVGWVIFDEIHYMRDK-ERGYVWEETLILLS------DNVRFVFLSATIPNA 207 (391)
Q Consensus 152 ~~l~~~~~~l~~~~~lViDE~h~~~~~-~~~~~~~~i~~~~~------~~~~~i~~SAT~~~~ 207 (391)
+..... ..++++++++|=+-+.... ..-..+..+..... +.-.++.++|+....
T Consensus 82 ~~~~~a--~~~~~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~ 142 (211)
T d2qy9a2 82 DAIQAA--KARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQN 142 (211)
T ss_dssp HHHHHH--HHTTCSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHH
T ss_pred HHHHHH--HHcCCCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcc
Confidence 222111 1347899999999764321 11122333333332 234567788988543
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=97.13 E-value=0.00051 Score=57.16 Aligned_cols=40 Identities=13% Similarity=0.166 Sum_probs=29.1
Q ss_pred CcHHHHHHHHHH----hcCC---cEEEEecCCcchHHHHHHHHHHHH
Q psy6275 58 LDPFQKEAILCI----ENNQ---SVLVSAHTSAGKTVVAEYAIASSL 97 (391)
Q Consensus 58 ~~~~Q~~~i~~i----~~~~---~~li~apTGsGKT~~~~~~~~~~l 97 (391)
++|||..++..+ .+++ .+++.||+|+|||..+...+-..+
T Consensus 3 ~yPw~~~~~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~~a~~l~ 49 (207)
T d1a5ta2 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLL 49 (207)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCcccHHHHHHHHHHHHcCCcCeEEEEECCCCCcHHHHHHHHHHhcc
Confidence 458988888755 3333 389999999999998766554443
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=97.10 E-value=0.0021 Score=53.40 Aligned_cols=123 Identities=12% Similarity=0.139 Sum_probs=65.1
Q ss_pred cEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEc--ccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTT--PIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILR 151 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~--P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l~ 151 (391)
-++++||||+|||++..-.+.+...++.+|.+++ ..|.-+.++.+.+.+..+ +.+....... -+..+.
T Consensus 13 vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~-i~~~~~~~~~---------d~~~~~ 82 (213)
T d1vmaa2 13 VIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVG-ATVISHSEGA---------DPAAVA 82 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHT-CEEECCSTTC---------CHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeecccccchhHHHHHHhhhcC-ccccccCCCC---------cHHHHH
Confidence 4678999999999987555555556666666654 346666666666665543 2122111110 122211
Q ss_pred HHHhcCccccCccceEEEecccccCcc-ccchhHHHHHHHhC------CCCcEEEEcccCCCh
Q psy6275 152 NMLYRGSEITREVGWVIFDEIHYMRDK-ERGYVWEETLILLS------DNVRFVFLSATIPNA 207 (391)
Q Consensus 152 ~~l~~~~~~l~~~~~lViDE~h~~~~~-~~~~~~~~i~~~~~------~~~~~i~~SAT~~~~ 207 (391)
.... .....++.++++||=+-+.... ..-..+..+..... +.-.++.++||....
T Consensus 83 ~~~~-~~~~~~~~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~ 144 (213)
T d1vmaa2 83 FDAV-AHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQN 144 (213)
T ss_dssp HHHH-HHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHH
T ss_pred HHHH-HHHHHcCCCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccCcc
Confidence 1111 0112347899999999865322 11112223333322 233577889987543
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=96.96 E-value=0.0025 Score=49.11 Aligned_cols=88 Identities=15% Similarity=0.169 Sum_probs=55.3
Q ss_pred EEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHHHHHH
Q psy6275 75 VLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILRNML 154 (391)
Q Consensus 75 ~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l~~~l 154 (391)
-++.||..||||.-.+--+.+....+.+++++-|...-- ....+..-.| .....+.+.....+...+
T Consensus 5 ~~i~GpMfsGKTteLi~~~~~~~~~~~kv~~ikp~~D~R---------~~~~i~s~~g----~~~~~~~~~~~~~~~~~~ 71 (139)
T d2b8ta1 5 EFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTR---------SIRNIQSRTG----TSLPSVEVESAPEILNYI 71 (139)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGG---------GCSSCCCCCC----CSSCCEEESSTHHHHHHH
T ss_pred EEEEccccCHHHHHHHHHHHHHHHCCCcEEEEEEccccc---------ccceEEcccC----ceeeeEEeccchhhHHHH
Confidence 478999999999987766666666788999999975421 1112211111 112234555555555554
Q ss_pred hcCccccCccceEEEecccccC
Q psy6275 155 YRGSEITREVGWVIFDEIHYMR 176 (391)
Q Consensus 155 ~~~~~~l~~~~~lViDE~h~~~ 176 (391)
.... ...+++++.+||++.+.
T Consensus 72 ~~~~-~~~~~dvI~IDE~QFf~ 92 (139)
T d2b8ta1 72 MSNS-FNDETKVIGIDEVQFFD 92 (139)
T ss_dssp HSTT-SCTTCCEEEECSGGGSC
T ss_pred Hhhc-cccCcCEEEechhhhcc
Confidence 4332 24588999999999864
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=96.90 E-value=0.0017 Score=53.84 Aligned_cols=120 Identities=12% Similarity=0.102 Sum_probs=60.7
Q ss_pred EEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcc--cHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHHHH
Q psy6275 75 VLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTP--IKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILRN 152 (391)
Q Consensus 75 ~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P--~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l~~ 152 (391)
++++||||+|||++..-.+.+...++.++.++.- .|.-+.++.+.+.+..+ +.+.... +++.+..
T Consensus 15 i~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~ga~eQL~~~a~~l~-v~~~~~~------------~~~~~~~ 81 (211)
T d1j8yf2 15 IMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIG-VPVYGEP------------GEKDVVG 81 (211)
T ss_dssp EEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCSSHHHHHHHHHHHHHHT-CCEECCT------------TCCCHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeeccccchhHHHHHhccccC-cceeecc------------cchhhhH
Confidence 6679999999999875444444455666666643 46666665566666553 2111111 1111111
Q ss_pred HHhcC--ccccCccceEEEecccccCccccc---hhHHHHHHHhCCCCcEEEEcccCCCh
Q psy6275 153 MLYRG--SEITREVGWVIFDEIHYMRDKERG---YVWEETLILLSDNVRFVFLSATIPNA 207 (391)
Q Consensus 153 ~l~~~--~~~l~~~~~lViDE~h~~~~~~~~---~~~~~i~~~~~~~~~~i~~SAT~~~~ 207 (391)
.+.+. .....+.+++++|=+-+....... ..+..+.....+.-.++.++|+....
T Consensus 82 ~~~~a~~~~~~~~~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~ 141 (211)
T d1j8yf2 82 IAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK 141 (211)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG
T ss_pred HHHHHHHHhhccCCceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcc
Confidence 11110 001347899999998764221111 22334445555555677788887543
|
| >d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=96.86 E-value=0.0016 Score=59.79 Aligned_cols=69 Identities=25% Similarity=0.276 Sum_probs=54.8
Q ss_pred CCCCCcHHHHHHHHHHh----cC-CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy6275 54 YPFVLDPFQKEAILCIE----NN-QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK 125 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i~----~~-~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~ 125 (391)
..|.|+.-|=+||..+. +| ++.++.|-||||||++....+.+ .+..+||++|+..+|.|+++.++.+++
T Consensus 8 ~~~~p~gDQP~aI~~l~~~l~~g~~~q~l~GltGS~ka~~iA~l~~~---~~rp~LVVt~n~~~A~qL~~dL~~~l~ 81 (413)
T d1t5la1 8 APYEPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTISNVIAQ---VNKPTLVIAHNKTLAGQLYSELKEFFP 81 (413)
T ss_dssp CSSCCCTTHHHHHHHHHHHHHHTCSEEEEEECTTSCHHHHHHHHHHH---HTCCEEEECSSHHHHHHHHHHHHHHCT
T ss_pred cCCCCCCCCHHHHHHHHHHHhcCCCcEEEeCCCCcHHHHHHHHHHHH---hCCCEEEEeCCHHHHHHHHHHHHHHcC
Confidence 45778888888887653 34 56899999999999875433332 266799999999999999999999987
|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=96.36 E-value=0.0037 Score=51.35 Aligned_cols=80 Identities=13% Similarity=0.104 Sum_probs=67.9
Q ss_pred HHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc--cceeeeCCccc-----------CCCCCEEEEcHHHHHHHHhc
Q psy6275 90 EYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK--DVGLITGDVTI-----------NPSSSCLIMTTEILRNMLYR 156 (391)
Q Consensus 90 ~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~--~v~~~~g~~~~-----------~~~~~I~v~Tp~~l~~~l~~ 156 (391)
...+...+.++.+|.|++|..+-....+..+++.+. +++++||.+.. +.+.+|+|||. +-+
T Consensus 21 ~~~I~~El~rGgQvy~V~p~I~~~e~~~~~l~~~~p~~~i~~lHGkm~~~eke~im~~F~~g~~~ILv~Tt------vIE 94 (211)
T d2eyqa5 21 REAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT------IIE 94 (211)
T ss_dssp HHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESS------TTG
T ss_pred HHHHHHHHHcCCeEEEEEcCccchhhHHHHHHHhCCceEEEEEEeccCHHHHHHHHHHHHcCCcceEEEeh------hhh
Confidence 345667788999999999999999999999999988 78889998763 45789999998 556
Q ss_pred CccccCccceEEEeccccc
Q psy6275 157 GSEITREVGWVIFDEIHYM 175 (391)
Q Consensus 157 ~~~~l~~~~~lViDE~h~~ 175 (391)
....+.+..++|+.+|+++
T Consensus 95 vGiDvpnA~~iiI~~a~rf 113 (211)
T d2eyqa5 95 TGIDIPTANTIIIERADHF 113 (211)
T ss_dssp GGSCCTTEEEEEETTTTSS
T ss_pred hccCCCCCcEEEEecchhc
Confidence 6677889999999999976
|
| >d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Clostridium acetobutylicum [TaxId: 1488]
Probab=96.33 E-value=0.0076 Score=46.33 Aligned_cols=88 Identities=11% Similarity=0.088 Sum_probs=50.8
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILR 151 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l~ 151 (391)
|.--++.||..||||.-.+--+.+....+.+++++-|...-- ........+.+.. ...+.+.+...+.
T Consensus 7 G~l~lI~GpMfSGKTteLi~~~~~~~~~g~~vl~i~~~~D~R---------y~~~~i~sh~g~~---~~a~~~~~~~~~~ 74 (141)
T d1xx6a1 7 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNR---------YSKEDVVSHMGEK---EQAVAIKNSREIL 74 (141)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC----------------CEEECTTSCE---EECEEESSSTHHH
T ss_pred eeEEEEEeccccHHHHHHHHHHHHhhhcCCcEEEEEeccccc---------cccceeeecccce---EEEEEecchhhhh
Confidence 444688999999999987766666666788999999976521 1111111111111 1123343333333
Q ss_pred HHHhcCccccCccceEEEecccccCc
Q psy6275 152 NMLYRGSEITREVGWVIFDEIHYMRD 177 (391)
Q Consensus 152 ~~l~~~~~~l~~~~~lViDE~h~~~~ 177 (391)
... ..+++++.+||+|.+.+
T Consensus 75 ~~~------~~~~dvI~IDE~QFf~d 94 (141)
T d1xx6a1 75 KYF------EEDTEVIAIDEVQFFDD 94 (141)
T ss_dssp HHC------CTTCSEEEECSGGGSCT
T ss_pred hhh------cccccEEEEeehhhccc
Confidence 322 34789999999998753
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.31 E-value=0.0064 Score=49.80 Aligned_cols=112 Identities=14% Similarity=0.088 Sum_probs=60.1
Q ss_pred HHHHHHHHh---cCCcEEEEecCCcchHHHHHHHHHHHHh---cCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcc
Q psy6275 62 QKEAILCIE---NNQSVLVSAHTSAGKTVVAEYAIASSLK---QSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVT 135 (391)
Q Consensus 62 Q~~~i~~i~---~~~~~li~apTGsGKT~~~~~~~~~~l~---~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~ 135 (391)
|.+.+..+. .+.++++.||.|+|||..+....-.... ..+-++++.|...
T Consensus 2 ~~~~l~~~i~~~~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D~~~i~~~~~------------------------ 57 (198)
T d2gnoa2 2 QLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE------------------------ 57 (198)
T ss_dssp HHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS------------------------
T ss_pred HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhccccCCCCEEEEeCCcC------------------------
Confidence 556666553 2457999999999999876544422211 1234666655311
Q ss_pred cCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEcccC
Q psy6275 136 INPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATI 204 (391)
Q Consensus 136 ~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 204 (391)
.|-|-.-..+.+.+...+ .....+++|+||||.|.... ...+..++..-+.+..+++.|..+
T Consensus 58 -----~I~Id~IR~i~~~~~~~~-~~~~~KviIId~ad~l~~~a-qNaLLK~LEEPp~~t~fiLit~~~ 119 (198)
T d2gnoa2 58 -----NIGIDDIRTIKDFLNYSP-ELYTRKYVIVHDCERMTQQA-ANAFLKALEEPPEYAVIVLNTRRW 119 (198)
T ss_dssp -----CBCHHHHHHHHHHHTSCC-SSSSSEEEEETTGGGBCHHH-HHHTHHHHHSCCTTEEEEEEESCG
T ss_pred -----CCCHHHHHHHHHHHhhCc-ccCCCEEEEEeCccccchhh-hhHHHHHHhCCCCCceeeeccCCh
Confidence 011111111222332222 34578899999999985321 222333444445566666665544
|
| >d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.18 E-value=0.0084 Score=45.63 Aligned_cols=40 Identities=10% Similarity=0.007 Sum_probs=30.6
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKA 111 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~ 111 (391)
|.--++.||..||||.-.+-.+......+.+++++-|...
T Consensus 2 G~L~li~GpMfsGKTt~Li~~~~~~~~~g~~v~~ikp~~D 41 (133)
T d1xbta1 2 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKD 41 (133)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTC
T ss_pred cEEEEEEecccCHHHHHHHHHHHHHHHcCCcEEEEecccc
Confidence 3345789999999999766666665566788999988654
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=96.00 E-value=0.0086 Score=50.47 Aligned_cols=21 Identities=29% Similarity=0.344 Sum_probs=16.7
Q ss_pred cEEEEecCCcchHHHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIA 94 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~ 94 (391)
.+++.||+|+|||..+...+-
T Consensus 36 ~~Ll~Gp~G~GKtt~a~~~~~ 56 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIARLLAK 56 (239)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 389999999999987654443
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.00 E-value=0.0031 Score=53.51 Aligned_cols=23 Identities=17% Similarity=0.208 Sum_probs=17.7
Q ss_pred CcEEEEecCCcchHHHHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIAS 95 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~ 95 (391)
.++++.||+|+|||..+...+-+
T Consensus 34 ~~lll~Gp~G~GKTt~~~~la~~ 56 (252)
T d1sxje2 34 PHLLLYGPNGTGKKTRCMALLES 56 (252)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999876544433
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.89 E-value=0.016 Score=48.97 Aligned_cols=19 Identities=37% Similarity=0.440 Sum_probs=15.8
Q ss_pred CcEEEEecCCcchHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEY 91 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~ 91 (391)
+.+++.||+|+|||..+-.
T Consensus 41 ~~vLL~GppGtGKT~la~a 59 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAK 59 (246)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHH
Confidence 3599999999999987543
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.84 E-value=0.017 Score=48.68 Aligned_cols=32 Identities=13% Similarity=0.200 Sum_probs=21.8
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEc
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTT 107 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~ 107 (391)
+.+++.||+|+|||.++-..+-+. +..+..+-
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~---~~~~~~~~ 84 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQEL---GYDILEQN 84 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT---TCEEEEEC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH---Hhhhhccc
Confidence 469999999999998764443322 45555553
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.78 E-value=0.0088 Score=49.74 Aligned_cols=42 Identities=26% Similarity=0.332 Sum_probs=25.3
Q ss_pred CccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEcccC
Q psy6275 162 REVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATI 204 (391)
Q Consensus 162 ~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 204 (391)
....++|+||+|.+...... .+...+...+....+++.+...
T Consensus 100 ~~~kviiiDe~d~~~~~~~~-~ll~~~e~~~~~~~~i~~~~~~ 141 (224)
T d1sxjb2 100 GKHKIVILDEADSMTAGAQQ-ALRRTMELYSNSTRFAFACNQS 141 (224)
T ss_dssp TCCEEEEEESGGGSCHHHHH-TTHHHHHHTTTTEEEEEEESCG
T ss_pred cceEEEEEecccccchhHHH-HHhhhccccccceeeeeccCch
Confidence 35679999999998654322 2333444445555566655544
|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=95.75 E-value=0.0018 Score=53.30 Aligned_cols=64 Identities=19% Similarity=0.200 Sum_probs=53.6
Q ss_pred CCCcEEEEEcchhhHHHHHHHhhcc----------CCCChHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhh
Q psy6275 306 NLAPVIVFSFSKKDCEIYAMQMAKL----------NFNETEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIG 374 (391)
Q Consensus 306 ~~~~~iIF~~t~~~~~~la~~L~~~----------g~~~~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~ 374 (391)
.++++.+.||..+..+.++..+.+. |-...++++.++..|.+ .+++|++|. +++.|||
T Consensus 30 rGgQvy~V~p~I~~~e~~~~~l~~~~p~~~i~~lHGkm~~~eke~im~~F~~g~~~ILv~Tt-----------vIEvGiD 98 (211)
T d2eyqa5 30 RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-----------IIETGID 98 (211)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESS-----------TTGGGSC
T ss_pred cCCeEEEEEcCccchhhHHHHHHHhCCceEEEEEEeccCHHHHHHHHHHHHcCCcceEEEeh-----------hhhhccC
Confidence 4569999999999999999999874 44456888888888888 689999884 9999999
Q ss_pred hccCCC
Q psy6275 375 IHHGVK 380 (391)
Q Consensus 375 ~~h~~~ 380 (391)
++.|++
T Consensus 99 vpnA~~ 104 (211)
T d2eyqa5 99 IPTANT 104 (211)
T ss_dssp CTTEEE
T ss_pred CCCCcE
Confidence 998764
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.74 E-value=0.0018 Score=57.47 Aligned_cols=51 Identities=24% Similarity=0.264 Sum_probs=38.3
Q ss_pred HHHHHHH-HHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHH
Q psy6275 61 FQKEAIL-CIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKAL 112 (391)
Q Consensus 61 ~Q~~~i~-~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L 112 (391)
-+...+. ++..++|++++||||||||+. +.+++..+....+++.+--+.||
T Consensus 154 ~~~~~l~~~v~~~~nili~G~tgSGKTT~-l~al~~~i~~~~rivtiEd~~El 205 (323)
T d1g6oa_ 154 QAISAIKDGIAIGKNVIVCGGTGSGKTTY-IKSIMEFIPKEERIISIEDTEEI 205 (323)
T ss_dssp HHHHHHHHHHHHTCCEEEEESTTSSHHHH-HHHHGGGSCTTCCEEEEESSCCC
T ss_pred HHHHHHHHHHHhCCCEEEEeeccccchHH-HHHHhhhcccccceeeccchhhh
Confidence 3344444 346789999999999999987 45666667777889988777776
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.72 E-value=0.011 Score=49.20 Aligned_cols=34 Identities=12% Similarity=0.055 Sum_probs=22.0
Q ss_pred HHHHHHHHHH-hcCC--cEEEEecCCcchHHHHHHHH
Q psy6275 60 PFQKEAILCI-ENNQ--SVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 60 ~~Q~~~i~~i-~~~~--~~li~apTGsGKT~~~~~~~ 93 (391)
+...+.+..+ .+++ +++++||+|+|||..+...+
T Consensus 20 ~~~~~~L~~~i~~~~~~~lLl~Gp~G~GKttl~~~la 56 (227)
T d1sxjc2 20 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALA 56 (227)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCeEEEECCCCCChhHHHHHHH
Confidence 3344444433 3333 69999999999998755444
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.66 E-value=0.02 Score=47.67 Aligned_cols=21 Identities=24% Similarity=0.230 Sum_probs=17.1
Q ss_pred CcEEEEecCCcchHHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~ 93 (391)
.+++++||+|+|||.++-..+
T Consensus 46 ~~lll~Gp~G~GKTtla~~ia 66 (231)
T d1iqpa2 46 PHLLFAGPPGVGKTTAALALA 66 (231)
T ss_dssp CEEEEESCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHH
Confidence 579999999999998764443
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.48 E-value=0.011 Score=54.04 Aligned_cols=42 Identities=17% Similarity=0.194 Sum_probs=30.2
Q ss_pred CCcHHHHHHHHHHhc--CCcEEEEecCCcchHHHHHHHHHHHHhc
Q psy6275 57 VLDPFQKEAILCIEN--NQSVLVSAHTSAGKTVVAEYAIASSLKQ 99 (391)
Q Consensus 57 ~~~~~Q~~~i~~i~~--~~~~li~apTGsGKT~~~~~~~~~~l~~ 99 (391)
.+.+.|.+.+..+.. ..-++++||||||||++.. .++..+..
T Consensus 141 G~~~~~~~~l~~l~~~~~GliLvtGpTGSGKSTTl~-~~l~~~~~ 184 (401)
T d1p9ra_ 141 GMTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLY-AGLQELNS 184 (401)
T ss_dssp CCCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHHH-HHHHHHCC
T ss_pred cccHHHHHHHHHHHhhhhceEEEEcCCCCCccHHHH-HHhhhhcC
Confidence 356888888887754 3458999999999998844 34455533
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=95.42 E-value=0.03 Score=47.32 Aligned_cols=33 Identities=21% Similarity=0.231 Sum_probs=23.2
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcc
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTP 108 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P 108 (391)
+.+++.||+|+|||..+-..+-. .+..++.+.+
T Consensus 43 ~giLl~GppGtGKT~la~aia~~---~~~~~~~i~~ 75 (247)
T d1ixza_ 43 KGVLLVGPPGVGKTHLARAVAGE---ARVPFITASG 75 (247)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH---TTCCEEEEEH
T ss_pred ceEEEecCCCCChhHHHHHHHHH---cCCCEEEEEh
Confidence 56999999999999976444322 2556666644
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=95.35 E-value=0.015 Score=46.10 Aligned_cols=52 Identities=15% Similarity=0.060 Sum_probs=29.7
Q ss_pred cCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEcccCCChHHHHHH
Q psy6275 161 TREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNASQFAQW 213 (391)
Q Consensus 161 l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~ 213 (391)
....+++++||++..... .......+...+......++++.--.....+.+.
T Consensus 97 ~~~~~vlllDE~~~~~~~-~~~~~~~l~~~l~~~~~~il~~~h~~~~~~~~~~ 148 (178)
T d1ye8a1 97 KDRRKVIIIDEIGKMELF-SKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKE 148 (178)
T ss_dssp HCTTCEEEECCCSTTGGG-CHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHH
T ss_pred hcCCCceeecCCCccchh-hHHHHHHHHHHhccCCCEEEEEEccHHHHHhhce
Confidence 457889999999765332 2334555666666555566655544333334443
|
| >d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=95.35 E-value=0.0037 Score=49.71 Aligned_cols=72 Identities=14% Similarity=0.158 Sum_probs=45.0
Q ss_pred HHHHHHHHHH--cCCCcEEEEEcchhhHHHHHHHhhccCCCCh------HHHHHHHHHHHHHhhhcchhhccCcchHhHH
Q psy6275 295 CFKIVKMIME--RNLAPVIVFSFSKKDCEIYAMQMAKLNFNET------EEVKLVDDVFSNAMDVLSEEDRKLPQIENIL 366 (391)
Q Consensus 295 ~~~l~~~l~~--~~~~~~iIF~~t~~~~~~la~~L~~~g~~~~------~~r~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 366 (391)
+.++++.+.+ ..+.|+||++.|.+.++.++..|.+.|++.. .+++.. . +........+-+.|
T Consensus 20 ~~AIi~eV~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLnAk~~~~Ea~--I--------I~~Ag~~g~VtIAT 89 (175)
T d1tf5a4 20 FKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQ--I--------IEEAGQKGAVTIAT 89 (175)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHH--H--------HTTTTSTTCEEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCceeehhhhHHHHHH--H--------HHhccCCCceeehh
Confidence 3444444433 2357999999999999999999999887754 222111 1 11111112334455
Q ss_pred HHHHhhhhhc
Q psy6275 367 PLLRRGIGIH 376 (391)
Q Consensus 367 ~~l~~GI~~~ 376 (391)
++..||.||.
T Consensus 90 NmAGRGtDik 99 (175)
T d1tf5a4 90 NMAGRGTDIK 99 (175)
T ss_dssp TTSSTTCCCC
T ss_pred hHHHcCCCcc
Confidence 7999999984
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=95.26 E-value=0.056 Score=43.61 Aligned_cols=102 Identities=14% Similarity=0.137 Sum_probs=60.6
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhc-------CCeEEEEcccHHHH-----HHHHHHHHHhcc-------ccee---
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQ-------SQRVIYTTPIKALS-----NQKYREFEEQFK-------DVGL--- 129 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~-------~~~vlvl~P~~~L~-----~q~~~~~~~~~~-------~v~~--- 129 (391)
..|++++||+|.|||....-.+...... +.+++.+-+.+-++ .++..+++.... ++-+
T Consensus 43 k~n~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~ld~~~LiAg~~~rG~~E~rl~~il~e~~~~~~~iILfID 122 (195)
T d1jbka_ 43 KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFID 122 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEE
T ss_pred CCCeEEEecCCcccHHHHHHHHHHHHhCCCCHHHcCceEEEeeHHHHhccCCccHHHHHHHHHHHHHHhcCCCcEEEEcc
Confidence 4689999999999998865554444322 45555554433221 244444443332 2222
Q ss_pred ----eeCCccc---------------CCCCC-EEEEcHHHHHHHHhcCccccCccceEEEeccc
Q psy6275 130 ----ITGDVTI---------------NPSSS-CLIMTTEILRNMLYRGSEITREVGWVIFDEIH 173 (391)
Q Consensus 130 ----~~g~~~~---------------~~~~~-I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h 173 (391)
+.|.... ...-. |.-+||+.+..++.+.....+.+..+-++|-+
T Consensus 123 eih~l~~~g~~~g~~d~~~~Lkp~L~rg~l~~IgatT~eey~~~~e~d~aL~rrF~~I~V~Ep~ 186 (195)
T d1jbka_ 123 ELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPS 186 (195)
T ss_dssp TGGGGTT------CCCCHHHHHHHHHTTSCCEEEEECHHHHHHHTTTCHHHHTTEEEEECCCCC
T ss_pred hHHHHhcCCCCCCcccHHHHHHHHHhCCCceEEecCCHHHHHHHHHcCHHHHhcCCEeecCCCC
Confidence 1111000 11223 45688999988888888788899999999965
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.05 E-value=0.0094 Score=47.27 Aligned_cols=32 Identities=19% Similarity=0.157 Sum_probs=22.4
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHhcCCeEE
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVI 104 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~~~~~vl 104 (391)
+++++.||+|+|||+.....+......+.++.
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~ 33 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVD 33 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTTCCCE
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHCCCEEE
Confidence 68999999999999976544444444444443
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=94.99 E-value=0.013 Score=53.80 Aligned_cols=45 Identities=20% Similarity=0.325 Sum_probs=36.9
Q ss_pred hcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHH
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSN 114 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~ 114 (391)
...+++++.|+||+|||......+.+.+..+..++|+-|.-++..
T Consensus 48 ~~~~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD~kge~~~ 92 (433)
T d1e9ra_ 48 AEPRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDMLS 92 (433)
T ss_dssp GGGGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEETTHHHH
T ss_pred cccceEEEEeCCCCcHHHHHHHHHHHHHhCCCCEEEEeCChhHHH
Confidence 446789999999999998866666677788889999999887644
|
| >d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=94.06 E-value=0.061 Score=48.83 Aligned_cols=66 Identities=26% Similarity=0.272 Sum_probs=49.7
Q ss_pred CCcHHHHHHHHHH----hcCC-cEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy6275 57 VLDPFQKEAILCI----ENNQ-SVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK 125 (391)
Q Consensus 57 ~~~~~Q~~~i~~i----~~~~-~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~ 125 (391)
+|+.-|-+||..+ .+|+ ...+.|-+||+|+++... +... .+..+||++|+...|.++++.+..+++
T Consensus 8 ~p~~dqp~aI~~l~~~L~~g~~~~~L~GlsgS~ka~~~A~-l~~~--~~rp~LvVt~~~~~A~~l~~dL~~~l~ 78 (408)
T d1c4oa1 8 SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAK-VIEA--LGRPALVLAPNKILAAQLAAEFRELFP 78 (408)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHH--HTCCEEEEESSHHHHHHHHHHHHHHCT
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHH-HHHH--hCCCEEEEeCCHHHHHHHHHHHHHhcC
Confidence 4666776677654 4555 468999999999976432 2232 255799999999999999999999986
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.99 E-value=0.19 Score=42.48 Aligned_cols=33 Identities=21% Similarity=0.269 Sum_probs=22.8
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEc
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTT 107 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~ 107 (391)
.+.+++.||+|+|||..+-..+-.. +..++.+.
T Consensus 41 ~~giLL~Gp~GtGKT~l~~ala~~~---~~~~~~~~ 73 (265)
T d1r7ra3 41 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISIK 73 (265)
T ss_dssp CCEEEEBCCTTSSHHHHHHHHHHHT---TCEEEEEC
T ss_pred CCeEEEECCCCCcchhHHHHHHHHh---CCcEEEEE
Confidence 4679999999999998754433222 55666664
|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=93.86 E-value=0.01 Score=51.11 Aligned_cols=28 Identities=29% Similarity=0.496 Sum_probs=25.5
Q ss_pred CCcEEEEEcchhhHHHHHHHhhccCCCC
Q psy6275 307 LAPVIVFSFSKKDCEIYAMQMAKLNFNE 334 (391)
Q Consensus 307 ~~~~iIF~~t~~~~~~la~~L~~~g~~~ 334 (391)
++++||||+|++.|+.++..|++.|+++
T Consensus 36 ggk~LVFcnSR~~aE~La~~L~~~Gi~a 63 (299)
T d1a1va2 36 GGRHLIFCHSKKKCDELAAKLVALGINA 63 (299)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHTTCCE
T ss_pred CCCEEEECCcHHHHHHHHHHHHHCCCCE
Confidence 4699999999999999999999988764
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=93.83 E-value=0.016 Score=50.82 Aligned_cols=20 Identities=30% Similarity=0.461 Sum_probs=17.3
Q ss_pred cCCcEEEEecCCcchHHHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAE 90 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~ 90 (391)
..+++++.||||+|||..+-
T Consensus 48 ~~~~iLl~GPpG~GKT~lAk 67 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIAR 67 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 45789999999999999763
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=93.77 E-value=0.032 Score=46.49 Aligned_cols=38 Identities=18% Similarity=0.310 Sum_probs=32.3
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcc
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTP 108 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P 108 (391)
.|.-+++.|++|+|||...+..+.+....+..++++.-
T Consensus 25 ~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is~ 62 (242)
T d1tf7a2 25 KDSIILATGATGTGKTLLVSRFVENACANKERAILFAY 62 (242)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhccccceeec
Confidence 35679999999999999988888888888888888864
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=93.67 E-value=0.15 Score=40.18 Aligned_cols=77 Identities=14% Similarity=0.109 Sum_probs=61.4
Q ss_pred HHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCccc-----------CCCCCEEEEcHHHHHHHHhcCccc
Q psy6275 92 AIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTI-----------NPSSSCLIMTTEILRNMLYRGSEI 160 (391)
Q Consensus 92 ~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~-----------~~~~~I~v~Tp~~l~~~l~~~~~~ 160 (391)
.+......+.++||.++++..++.+...+.+.+-.+..++|+.+. +.+.+|+|+|. +......
T Consensus 23 ~i~~~~~~g~r~lvfc~t~~~~~~l~~~L~~~Gi~a~~~Hg~~~~~eR~~~l~~F~~G~~~vLVaT~------v~~~GiD 96 (174)
T d1c4oa2 23 GIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN------LLREGLD 96 (174)
T ss_dssp HHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC------CCCTTCC
T ss_pred HHHHHHhcCCcEEEEEcchhHHHHHHHHHHhcCCceEEEecccchHHHHHHHHHHHCCCeEEEEeee------eeeeecc
Confidence 344555678999999999999999999999987788999998873 34678999987 4445556
Q ss_pred cCccceEEEecccc
Q psy6275 161 TREVGWVIFDEIHY 174 (391)
Q Consensus 161 l~~~~~lViDE~h~ 174 (391)
.++++++|+=.++.
T Consensus 97 ip~V~~Vi~~~~~~ 110 (174)
T d1c4oa2 97 IPEVSLVAILDADK 110 (174)
T ss_dssp CTTEEEEEETTTTS
T ss_pred CCCCcEEEEecccc
Confidence 77899988866654
|
| >d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: ATP:corrinoid adenosyltransferase CobA species: Salmonella typhimurium [TaxId: 90371]
Probab=93.33 E-value=0.026 Score=43.89 Aligned_cols=37 Identities=24% Similarity=0.179 Sum_probs=31.5
Q ss_pred cEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIK 110 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~ 110 (391)
-+.+.-..|-|||++++--+++++..+.+|+++.=.+
T Consensus 4 ~i~vytG~GKGKTTAAlG~alRA~G~G~rV~ivQFlK 40 (157)
T d1g5ta_ 4 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIK 40 (157)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHhcCCCEEEEEEEec
Confidence 3667778899999999999999999999999996443
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=93.27 E-value=0.029 Score=43.25 Aligned_cols=22 Identities=14% Similarity=0.339 Sum_probs=18.2
Q ss_pred CCcEEEEecCCcchHHHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~ 93 (391)
.+++++.||+|+|||+++-...
T Consensus 2 ~k~I~l~G~~GsGKSTvak~La 23 (169)
T d1kaga_ 2 KRNIFLVGPMGAGKSTIGRQLA 23 (169)
T ss_dssp CCCEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 4689999999999998865444
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=93.07 E-value=0.019 Score=52.91 Aligned_cols=19 Identities=32% Similarity=0.476 Sum_probs=16.9
Q ss_pred CCcEEEEecCCcchHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAE 90 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~ 90 (391)
.+|+++.||||+|||+.+-
T Consensus 49 ksNILliGPTGvGKTlLAr 67 (443)
T d1g41a_ 49 PKNILMIGPTGVGKTEIAR 67 (443)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred cccEEEECCCCCCHHHHHH
Confidence 5699999999999999864
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=92.73 E-value=0.03 Score=50.21 Aligned_cols=18 Identities=33% Similarity=0.565 Sum_probs=16.1
Q ss_pred CCcEEEEecCCcchHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVA 89 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~ 89 (391)
..|+++.||||+|||..+
T Consensus 68 ~~niLfiGPTGvGKTElA 85 (364)
T d1um8a_ 68 KSNILLIGPTGSGKTLMA 85 (364)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CcceeeeCCCCccHHHHH
Confidence 468999999999999875
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=92.71 E-value=0.074 Score=43.68 Aligned_cols=38 Identities=21% Similarity=0.268 Sum_probs=27.2
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHH-HhcCCeEEEEcc
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASS-LKQSQRVIYTTP 108 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~-l~~~~~vlvl~P 108 (391)
.|.-+++.|++|+|||...+-.+.+. ...+..++++..
T Consensus 25 ~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~~s~ 63 (242)
T d1tf7a1 25 IGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTF 63 (242)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCcccccc
Confidence 45779999999999998765544443 344567777754
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=92.50 E-value=0.18 Score=42.72 Aligned_cols=103 Identities=14% Similarity=0.122 Sum_probs=58.5
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHh-------cCCeEEEEcccHHHH-----HHHHHHHHHhc----c--cceeeeCC
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLK-------QSQRVIYTTPIKALS-----NQKYREFEEQF----K--DVGLITGD 133 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~-------~~~~vlvl~P~~~L~-----~q~~~~~~~~~----~--~v~~~~g~ 133 (391)
..|++++||+|.|||....-.+..... .+.+++.+.+.+-++ .++..+++... . ++-++..+
T Consensus 39 k~n~lLVG~~GvGKTalv~~la~ri~~~~vp~~l~~~~i~~l~~~~liag~~~~g~~e~r~~~i~~~~~~~~~iIlfiDe 118 (268)
T d1r6bx2 39 KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDE 118 (268)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETT
T ss_pred cCCcEEECCCCCcHHHHHHHHHHHHHhCCcccccccceeEEeeechHhccCccchhHHHHHHHHHHHhhccCCceEEecc
Confidence 468999999999999876554444332 234566555544332 12222222222 1 22221111
Q ss_pred ---------cc---------c-----CCCCC-EEEEcHHHHHHHHhcCccccCccceEEEecccc
Q psy6275 134 ---------VT---------I-----NPSSS-CLIMTTEILRNMLYRGSEITREVGWVIFDEIHY 174 (391)
Q Consensus 134 ---------~~---------~-----~~~~~-I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~ 174 (391)
.. . ..+-. |.-+||+.+..++.......+.+..+-++|-+.
T Consensus 119 ih~l~~~g~~~g~~~d~a~~Lkp~L~rg~i~vIgatT~eey~~~~e~d~al~rrF~~I~V~Eps~ 183 (268)
T d1r6bx2 119 IHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSI 183 (268)
T ss_dssp TTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECHHHHHCCCCCTTSSGGGEEEEECCCCCH
T ss_pred hHHHhcCCCCCCccccHHHHhhHHHhCCCCeEEEeCCHHHHHHHHhhcHHHHhhhcccccCCCCH
Confidence 00 0 11122 556789988877777777888999999999873
|
| >d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=92.44 E-value=0.011 Score=48.47 Aligned_cols=74 Identities=12% Similarity=0.108 Sum_probs=47.7
Q ss_pred HHHHHHHHHH--cCCCcEEEEEcchhhHH--------HHHHHhhcc-----------CCCChHHHHHHHHHHHH-Hhhhc
Q psy6275 295 CFKIVKMIME--RNLAPVIVFSFSKKDCE--------IYAMQMAKL-----------NFNETEEVKLVDDVFSN-AMDVL 352 (391)
Q Consensus 295 ~~~l~~~l~~--~~~~~~iIF~~t~~~~~--------~la~~L~~~-----------g~~~~~~r~~~~~~~~~-~~~~l 352 (391)
...+.+.+.+ ..++++.+.|+..++.+ ...+.|.+. |-...++++.++..|++ .+++|
T Consensus 15 ~~~v~~~I~~el~~g~QvyvVcP~Ieese~~~~~~~~e~~~~l~~~~~p~~~v~~lHG~m~~~eke~~m~~F~~g~~~iL 94 (206)
T d1gm5a4 15 VNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDIL 94 (206)
T ss_dssp HHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBC
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeeecccccccchhhHHHHHHHHHhcCCCCeEEEEeecccHHHHHHHHHHHHCCCEEEE
Confidence 3444444443 23568888888655444 333444332 22334788888888888 78999
Q ss_pred chhhccCcchHhHHHHHHhhhhhccCC
Q psy6275 353 SEEDRKLPQIENILPLLRRGIGIHHGV 379 (391)
Q Consensus 353 ~~~d~~~~~~~~~~~~l~~GI~~~h~~ 379 (391)
++|+ ++++|||++.++
T Consensus 95 VaTt-----------ViE~GIDip~a~ 110 (206)
T d1gm5a4 95 VSTT-----------VIEVGIDVPRAN 110 (206)
T ss_dssp CCSS-----------CCCSCSCCTTCC
T ss_pred EEeh-----------hhhccccccCCc
Confidence 9995 899999999876
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=92.30 E-value=0.75 Score=38.02 Aligned_cols=21 Identities=19% Similarity=0.243 Sum_probs=17.3
Q ss_pred cCCcEEEEecCCcchHHHHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEY 91 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~ 91 (391)
.++.+++.||.|+|||.....
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~ 48 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKI 48 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHH
Confidence 457889999999999987543
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=91.97 E-value=0.51 Score=42.08 Aligned_cols=110 Identities=16% Similarity=0.172 Sum_probs=59.6
Q ss_pred HHHHHHh--cCCcEEEEecCCcchHHHHHHHHHHHHhc-------CCeEEEEcccHHHHH-----HHHHHHHHhcc----
Q psy6275 64 EAILCIE--NNQSVLVSAHTSAGKTVVAEYAIASSLKQ-------SQRVIYTTPIKALSN-----QKYREFEEQFK---- 125 (391)
Q Consensus 64 ~~i~~i~--~~~~~li~apTGsGKT~~~~~~~~~~l~~-------~~~vlvl~P~~~L~~-----q~~~~~~~~~~---- 125 (391)
+.+..+. ...|.+++|++|.|||...--.+...... +.+++.+-+.+-++. ++..++.....
T Consensus 33 ~~~~~L~r~~k~n~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~~g~~e~r~~~i~~~~~~ 112 (387)
T d1qvra2 33 RVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQ 112 (387)
T ss_dssp HHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCCCeEECCCCCCHHHHHHHHHHHHHhCCCCHHHcCceEEEeeHhhhhcccCcchhHHHHHHHHHHHhcc
Confidence 3344443 34579999999999998765444433322 346666655544432 33344433322
Q ss_pred ---ccee-------eeC--C----ccc---------CCCCC-EEEEcHHHHHHHHhcCccccCccceEEEecccc
Q psy6275 126 ---DVGL-------ITG--D----VTI---------NPSSS-CLIMTTEILRNMLYRGSEITREVGWVIFDEIHY 174 (391)
Q Consensus 126 ---~v~~-------~~g--~----~~~---------~~~~~-I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~ 174 (391)
++-+ +.| . ... .+.-+ |.-+||+.+.. +.+.....+.|..|-++|-+.
T Consensus 113 ~~~~~ilfide~h~l~~~g~~~g~~d~a~~Lkp~L~rg~~~~I~~tT~~ey~~-~e~d~al~rrF~~v~v~ep~~ 186 (387)
T d1qvra2 113 SQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDEYRE-IEKDPALERRFQPVYVDEPTV 186 (387)
T ss_dssp TCSSEEEEECCC-------------------HHHHHTTCCCEEEEECHHHHHH-HTTCTTTCSCCCCEEECCCCH
T ss_pred CCCceEEEeccHHHHhcCCCCCCcccHHHHHHHHHhCCCcceeeecCHHHHHH-hcccHHHHHhcccccCCCCcH
Confidence 2212 111 1 010 11223 55778888865 566677788999999999874
|
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=91.90 E-value=0.013 Score=51.13 Aligned_cols=61 Identities=16% Similarity=0.212 Sum_probs=41.3
Q ss_pred HHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCCh--------HHHHHHHHHHHHHhhhcchhhccCcchHhHHHHHHhh
Q psy6275 301 MIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNET--------EEVKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRG 372 (391)
Q Consensus 301 ~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~~--------~~r~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~G 372 (391)
.+.+.+ ++++|||++..+++.+|..|++.|.... ++.+ ....+..+++++|+ .++.|
T Consensus 31 ~i~~~~-g~~~~F~~s~~~~~~~a~~L~~~g~~V~~l~~~~~~~e~~---~~~~~~~~~~~~t~-----------~~~~~ 95 (299)
T d1yksa2 31 WILADK-RPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYP---TIKQKKPDFILATD-----------IAEMG 95 (299)
T ss_dssp HHHHCC-SCEEEECSCHHHHHHHHHHHHHTTCCEEECCSSSCC-----------CCCSEEEESS-----------STTCC
T ss_pred HHHhcC-CCEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCcCcHhHHh---hhhcCCcCEEEEec-----------hhhhc
Confidence 334444 5899999999999999999999876542 2222 22333566777775 88899
Q ss_pred hhhc
Q psy6275 373 IGIH 376 (391)
Q Consensus 373 I~~~ 376 (391)
+++.
T Consensus 96 ~~~~ 99 (299)
T d1yksa2 96 ANLC 99 (299)
T ss_dssp TTCC
T ss_pred eecC
Confidence 9883
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=91.84 E-value=0.38 Score=38.01 Aligned_cols=79 Identities=16% Similarity=0.129 Sum_probs=64.2
Q ss_pred HHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCccc-----------CCCCCEEEEcHHHHHHHHhcCc
Q psy6275 90 EYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTI-----------NPSSSCLIMTTEILRNMLYRGS 158 (391)
Q Consensus 90 ~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~-----------~~~~~I~v~Tp~~l~~~l~~~~ 158 (391)
+.-+...+..+.+++|.++++.-+..++..++...-.+..++|+.+. +.+.+|+|+|. +....
T Consensus 21 l~~i~~~~~~~~~~iif~~~~~~~~~~~~~l~~~g~~~~~~hg~~~~~eR~~~l~~Fr~g~~~vLVaTd------v~~rG 94 (181)
T d1t5la2 21 IGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGIN------LLREG 94 (181)
T ss_dssp HHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHHTSCSEEEESC------CCSSS
T ss_pred HHHHHHHHhcCCeEEEEeehhhhhHHHHHHHHhCCcceeEecCCccHHHHHHHHHHHHCCCCCEEEehh------HHHcc
Confidence 33455555678899999999999999999999887789999998874 34689999996 44556
Q ss_pred cccCccceEEEecccc
Q psy6275 159 EITREVGWVIFDEIHY 174 (391)
Q Consensus 159 ~~l~~~~~lViDE~h~ 174 (391)
..+.++++||.-++..
T Consensus 95 iDip~v~~VI~~d~p~ 110 (181)
T d1t5la2 95 LDIPEVSLVAILDADK 110 (181)
T ss_dssp CCCTTEEEEEETTTTS
T ss_pred CCCCCCCEEEEecCCc
Confidence 6788999999988875
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=91.81 E-value=0.051 Score=45.16 Aligned_cols=20 Identities=30% Similarity=0.419 Sum_probs=16.8
Q ss_pred CcEEEEecCCcchHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~ 92 (391)
.+++++||+|+|||..+-..
T Consensus 36 ~~~L~~GPpGtGKT~lA~~l 55 (238)
T d1in4a2 36 DHVLLAGPPGLGKTTLAHII 55 (238)
T ss_dssp CCEEEESSTTSSHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHH
Confidence 57999999999999976443
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=91.74 E-value=0.1 Score=43.76 Aligned_cols=24 Identities=17% Similarity=0.147 Sum_probs=18.5
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSL 97 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l 97 (391)
.++++.||+|+|||.+.-. +...+
T Consensus 44 ~~lll~GppGtGKT~l~~~-l~~~l 67 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRK-LWELY 67 (276)
T ss_dssp CEEEEECCTTSSHHHHHHH-HHHHH
T ss_pred CceEEECCCCCCHHHHHHH-HHHHH
Confidence 5799999999999987544 44444
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=91.69 E-value=0.12 Score=43.93 Aligned_cols=41 Identities=10% Similarity=0.112 Sum_probs=31.4
Q ss_pred HhcCCcEEEEecCCcchHHHHHHHHHHH-HhcCCeEEEEccc
Q psy6275 69 IENNQSVLVSAHTSAGKTVVAEYAIASS-LKQSQRVIYTTPI 109 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~~~~~~~~-l~~~~~vlvl~P~ 109 (391)
+..|+-+++.|+||+|||...+..+.+. ...+.+++++..-
T Consensus 32 ~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s~E 73 (277)
T d1cr2a_ 32 ARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE 73 (277)
T ss_dssp BCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEESS
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHhhhhhcccceeEeeec
Confidence 3457789999999999998766666654 4568889998753
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=91.60 E-value=0.042 Score=42.96 Aligned_cols=20 Identities=35% Similarity=0.634 Sum_probs=16.8
Q ss_pred cCCcEEEEecCCcchHHHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAE 90 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~ 90 (391)
.|+-+++.||+|||||+++-
T Consensus 3 ~g~iI~l~G~~GsGKSTia~ 22 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAE 22 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 46678899999999999753
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=91.52 E-value=0.049 Score=42.41 Aligned_cols=21 Identities=19% Similarity=0.366 Sum_probs=17.1
Q ss_pred CcEEEEecCCcchHHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~ 93 (391)
.+++++||+|||||+.+....
T Consensus 5 ~~I~i~G~pGsGKTTia~~La 25 (173)
T d1rkba_ 5 PNILLTGTPGVGKTTLGKELA 25 (173)
T ss_dssp CCEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 478999999999999765443
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=91.42 E-value=0.055 Score=42.23 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=17.2
Q ss_pred CCcEEEEecCCcchHHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~ 92 (391)
+.++++.||+|||||++.-..
T Consensus 5 ~~~I~i~G~~GsGKTT~~~~L 25 (174)
T d1y63a_ 5 GINILITGTPGTGKTSMAEMI 25 (174)
T ss_dssp SCEEEEECSTTSSHHHHHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHH
Confidence 457999999999999976433
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=91.33 E-value=0.11 Score=40.20 Aligned_cols=35 Identities=17% Similarity=0.124 Sum_probs=24.3
Q ss_pred cEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcc
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTP 108 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P 108 (391)
.+.++|+.|||||+..-..+...-.++.++.++..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~g~~v~v~~~ 38 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKH 38 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEecc
Confidence 36799999999998754444443355677776654
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=91.03 E-value=0.045 Score=41.83 Aligned_cols=18 Identities=22% Similarity=0.322 Sum_probs=14.7
Q ss_pred CcEEEEecCCcchHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAE 90 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~ 90 (391)
+-++++|++|||||+.+-
T Consensus 3 klIii~G~pGsGKTTla~ 20 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAR 20 (152)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 347899999999998653
|
| >d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V beta chain (RecB), N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=90.95 E-value=0.18 Score=46.11 Aligned_cols=54 Identities=15% Similarity=0.134 Sum_probs=41.8
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhc------------CCeEEEEcccHHHHHHHHHHHHHhcc
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQ------------SQRVIYTTPIKALSNQKYREFEEQFK 125 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~------------~~~vlvl~P~~~L~~q~~~~~~~~~~ 125 (391)
...++|.|+-|||||.+...=++..+.. ..++|+|+=|+.-+.++.+++.+.++
T Consensus 16 ~g~~lv~A~AGsGKT~~l~~r~~~ll~~~~~~~~~~~~~~~~~IL~lTFT~kAA~Emk~RI~~~L~ 81 (485)
T d1w36b1 16 QGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNIH 81 (485)
T ss_dssp SSCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEcCchHHHHHHHHHHHHHHhhCcccccccCCCCcccEeEeccHHHHHHHHHHHHHHHHH
Confidence 4568999999999999876666666532 13599999999988888888766554
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=90.91 E-value=0.072 Score=44.23 Aligned_cols=19 Identities=26% Similarity=0.366 Sum_probs=16.3
Q ss_pred CcEEEEecCCcchHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEY 91 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~ 91 (391)
.+++++||+|+|||..+-.
T Consensus 36 ~~~Ll~GPpG~GKTtla~~ 54 (239)
T d1ixsb2 36 EHLLLFGPPGLGKTTLAHV 54 (239)
T ss_dssp CCEEEECCTTSCHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 5799999999999987643
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=90.67 E-value=0.11 Score=40.64 Aligned_cols=35 Identities=20% Similarity=0.253 Sum_probs=22.5
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEE
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYT 106 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl 106 (391)
++-+++.|++|||||+..-...-..-..+..+.++
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~~~ 35 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMV 35 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEE
Confidence 35688999999999987544433322344555554
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=90.58 E-value=0.051 Score=42.21 Aligned_cols=18 Identities=11% Similarity=0.357 Sum_probs=15.1
Q ss_pred CcEEEEecCCcchHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAE 90 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~ 90 (391)
+-+++.||+|||||+.+-
T Consensus 3 klI~i~G~~GsGKTTva~ 20 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCK 20 (176)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 357899999999999754
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=90.54 E-value=0.039 Score=43.47 Aligned_cols=19 Identities=26% Similarity=0.420 Sum_probs=16.2
Q ss_pred CcEEEEecCCcchHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEY 91 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~ 91 (391)
+.+++.||+|+|||+.+-.
T Consensus 8 K~I~i~G~~GsGKTTla~~ 26 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNK 26 (192)
T ss_dssp EEEEEECCTTSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 6799999999999987543
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=90.42 E-value=0.15 Score=43.26 Aligned_cols=95 Identities=15% Similarity=0.118 Sum_probs=57.7
Q ss_pred HHHHHhc-C-----CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCC
Q psy6275 65 AILCIEN-N-----QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINP 138 (391)
Q Consensus 65 ~i~~i~~-~-----~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~ 138 (391)
+++.++. | +-+.+.||+|+|||...+..+....+++..++|+--......+.. +.+.-+.
T Consensus 41 ~lD~~Lg~GGi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~~~~~~~a---~~~Gvd~----------- 106 (263)
T d1u94a1 41 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYA---RKLGVDI----------- 106 (263)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHH---HHTTCCG-----------
T ss_pred HHHHHhcCCCccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEccccccCHHHH---HHhCCCH-----------
Confidence 4566653 3 568999999999999988888888788889998865554444332 2221111
Q ss_pred CCCEEEEc---HHHHHHHHhcCccccCccceEEEeccccc
Q psy6275 139 SSSCLIMT---TEILRNMLYRGSEITREVGWVIFDEIHYM 175 (391)
Q Consensus 139 ~~~I~v~T---p~~l~~~l~~~~~~l~~~~~lViDE~h~~ 175 (391)
.++++.. .+.+++.+..-. .-..++++|+|=+-.+
T Consensus 107 -d~v~~~~~~~~E~~~~~i~~l~-~~~~~~liViDSi~al 144 (263)
T d1u94a1 107 -DNLLCSQPDTGEQALEICDALA-RSGAVDVIVVDSVAAL 144 (263)
T ss_dssp -GGCEEECCSSHHHHHHHHHHHH-HHTCCSEEEEECGGGC
T ss_pred -HHEEEecCCCHHHHHHHHHHHH-hcCCCCEEEEECcccc
Confidence 1233333 343433332110 0135789999988765
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=90.22 E-value=0.032 Score=47.24 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=18.3
Q ss_pred HhcCCcEEEEecCCcchHHHH
Q psy6275 69 IENNQSVLVSAHTSAGKTVVA 89 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~ 89 (391)
+..|+.+.++||+|||||+..
T Consensus 41 i~~Ge~vaivG~sGsGKSTLl 61 (255)
T d2hyda1 41 IEKGETVAFVGMSGGGKSTLI 61 (255)
T ss_dssp ECTTCEEEEECSTTSSHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHH
Confidence 467899999999999999863
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=89.86 E-value=0.052 Score=45.52 Aligned_cols=21 Identities=14% Similarity=0.408 Sum_probs=18.2
Q ss_pred HhcCCcEEEEecCCcchHHHH
Q psy6275 69 IENNQSVLVSAHTSAGKTVVA 89 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~ 89 (391)
+..|+.+.++||+|||||+..
T Consensus 26 i~~Ge~vaIvG~sGsGKSTLl 46 (241)
T d2pmka1 26 IKQGEVIGIVGRSGSGKSTLT 46 (241)
T ss_dssp EETTCEEEEECSTTSSHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHH
Confidence 467899999999999999753
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=89.84 E-value=0.11 Score=40.28 Aligned_cols=21 Identities=14% Similarity=0.297 Sum_probs=17.1
Q ss_pred CcEEEEecCCcchHHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~ 93 (391)
+|+++.|++|+|||++.-..+
T Consensus 1 k~I~liG~~GsGKsTi~k~La 21 (161)
T d1viaa_ 1 KNIVFIGFMGSGKSTLARALA 21 (161)
T ss_dssp CCEEEECCTTSCHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHH
Confidence 579999999999999864433
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=89.82 E-value=0.07 Score=41.56 Aligned_cols=21 Identities=19% Similarity=0.414 Sum_probs=17.0
Q ss_pred cCCcEEEEecCCcchHHHHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEY 91 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~ 91 (391)
+.+-+++.|++|||||+++-.
T Consensus 2 ~~kiI~l~G~~GsGKsTva~~ 22 (178)
T d1qhxa_ 2 TTRMIILNGGSSAGKSGIVRC 22 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 456788999999999987543
|
| >d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.73 E-value=0.089 Score=42.51 Aligned_cols=77 Identities=17% Similarity=0.176 Sum_probs=50.4
Q ss_pred cHHHHHHHHHH--cCCCcEEEEEcchhhHHHHHHHhhccCCCCh------HHHHHHHHHHHHHhhhcchhhccCcchHhH
Q psy6275 294 NCFKIVKMIME--RNLAPVIVFSFSKKDCEIYAMQMAKLNFNET------EEVKLVDDVFSNAMDVLSEEDRKLPQIENI 365 (391)
Q Consensus 294 ~~~~l~~~l~~--~~~~~~iIF~~t~~~~~~la~~L~~~g~~~~------~~r~~~~~~~~~~~~~l~~~d~~~~~~~~~ 365 (391)
++.++++.+.. ..+.|+||.+.|....+.++..|.+.|++.. .+++.- +++.......+-+.
T Consensus 19 K~~Avv~ei~~~h~~GqPVLVGT~SVe~SE~lS~lL~~~gi~h~vLNAK~herEAe----------IIAqAG~~GaVTIA 88 (219)
T d1nkta4 19 KYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEAT----------IIAVAGRRGGVTVA 88 (219)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHH----------HHHTTTSTTCEEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEeeCcHHHHHHHHHHHHHhccchhccchhhHHHHHH----------HHHhcccCCcEEee
Confidence 34455554433 3467999999999999999999999988764 222221 12222222233445
Q ss_pred HHHHHhhhhhccCCC
Q psy6275 366 LPLLRRGIGIHHGVK 380 (391)
Q Consensus 366 ~~~l~~GI~~~h~~~ 380 (391)
|++..||.||.=||=
T Consensus 89 TNMAGRGTDI~LGgn 103 (219)
T d1nkta4 89 TNMAGRGTDIVLGGN 103 (219)
T ss_dssp ETTCSTTCCCCTTCC
T ss_pred ccccCCCCceeecCc
Confidence 579999999987763
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=89.62 E-value=0.077 Score=44.70 Aligned_cols=18 Identities=22% Similarity=0.434 Sum_probs=15.3
Q ss_pred CcEEEEecCCcchHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAE 90 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~ 90 (391)
+.+++.||||+|||..+-
T Consensus 33 ~~ilL~GpPGtGKT~la~ 50 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRS 50 (273)
T ss_dssp EEEEEECCTTSCTHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 358999999999999754
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=89.20 E-value=0.2 Score=42.14 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=17.7
Q ss_pred CCcEEEEecCCcchHHHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~ 93 (391)
.+.+++.||+|+|||+.+-..+
T Consensus 45 ~~~iLL~GppGtGKT~la~~iA 66 (256)
T d1lv7a_ 45 PKGVLMVGPPGTGKTLLAKAIA 66 (256)
T ss_dssp CCEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEeeCCCCCCccHHHHHHH
Confidence 4679999999999999864443
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=89.20 E-value=0.07 Score=41.66 Aligned_cols=22 Identities=14% Similarity=0.329 Sum_probs=17.7
Q ss_pred hcCCcEEEEecCCcchHHHHHH
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEY 91 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~ 91 (391)
.+|..++++|++|||||+++-.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~ 25 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARA 25 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHH
Confidence 3566788999999999998633
|
| >d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Dethiobiotin synthetase species: Escherichia coli [TaxId: 562]
Probab=89.18 E-value=0.17 Score=40.81 Aligned_cols=36 Identities=22% Similarity=0.253 Sum_probs=26.2
Q ss_pred CcEEEEec-CCcchHHHHHHHHHHHHhcCCeEEEEcc
Q psy6275 73 QSVLVSAH-TSAGKTVVAEYAIASSLKQSQRVIYTTP 108 (391)
Q Consensus 73 ~~~li~ap-TGsGKT~~~~~~~~~~l~~~~~vlvl~P 108 (391)
+.++|+|- ||.|||++....+...-.+|.+|+++=|
T Consensus 2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id~ 38 (224)
T d1byia_ 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKP 38 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEECc
Confidence 35667776 7999999876655555567889999843
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=88.96 E-value=0.16 Score=42.05 Aligned_cols=38 Identities=18% Similarity=0.106 Sum_probs=27.3
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHh------cCCeEEEEcc
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLK------QSQRVIYTTP 108 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~------~~~~vlvl~P 108 (391)
.|+-+++.||+|+|||...+..+.+... .+..++++.-
T Consensus 35 ~G~~~li~G~pGsGKT~~~lq~~~~~~~~~~~~~~~~~~~~~~~ 78 (254)
T d1pzna2 35 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDT 78 (254)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEES
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHhhchHHhcCCCceEEEEec
Confidence 3467999999999999987666655542 2466777743
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=88.91 E-value=0.15 Score=40.69 Aligned_cols=25 Identities=16% Similarity=0.258 Sum_probs=20.0
Q ss_pred HHhcCCcEEEEecCCcchHHHHHHH
Q psy6275 68 CIENNQSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 68 ~i~~~~~~li~apTGsGKT~~~~~~ 92 (391)
.+.+.+-+++.||+|||||+.+-..
T Consensus 4 ~~~~~~iI~l~G~pGSGKsT~a~~L 28 (194)
T d3adka_ 4 KLKKSKIIFVVGGPGSGKGTQCEKI 28 (194)
T ss_dssp HHHTSCEEEEEECTTSSHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHH
Confidence 3566788999999999999976544
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=88.51 E-value=0.084 Score=40.98 Aligned_cols=20 Identities=20% Similarity=0.300 Sum_probs=16.2
Q ss_pred CCcEEEEecCCcchHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEY 91 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~ 91 (391)
++-+++.||+|||||+.+-.
T Consensus 6 ~~iivl~G~~GsGKsT~a~~ 25 (171)
T d1knqa_ 6 HHIYVLMGVSGSGKSAVASE 25 (171)
T ss_dssp SEEEEEECSTTSCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 34578899999999998644
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=88.35 E-value=0.16 Score=40.25 Aligned_cols=22 Identities=18% Similarity=0.117 Sum_probs=17.7
Q ss_pred CCcEEEEecCCcchHHHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~ 93 (391)
|-.+++.||+|||||+..-..+
T Consensus 3 ~~riil~G~pGSGKsT~a~~La 24 (190)
T d1ak2a1 3 GVRAVLLGPPGAGKGTQAPKLA 24 (190)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHH
Confidence 5568899999999999875544
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=88.19 E-value=0.15 Score=40.03 Aligned_cols=20 Identities=25% Similarity=0.331 Sum_probs=16.3
Q ss_pred cEEEEecCCcchHHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~ 93 (391)
++++.||+|||||+.+-..+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La 21 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIV 21 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999865443
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=87.75 E-value=0.18 Score=39.24 Aligned_cols=21 Identities=14% Similarity=0.248 Sum_probs=17.3
Q ss_pred CcEEEEecCCcchHHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~ 93 (391)
+.+++.|++|||||+++-..+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA 23 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELA 23 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHH
Confidence 578999999999999865544
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.73 E-value=0.21 Score=42.00 Aligned_cols=34 Identities=15% Similarity=0.228 Sum_probs=22.6
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcc
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTP 108 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P 108 (391)
.+.+++.||+|+|||..+-..+ .. .+..++.+.+
T Consensus 38 ~~giLL~GppGtGKT~l~~ala-~~--~~~~~~~i~~ 71 (258)
T d1e32a2 38 PRGILLYGPPGTGKTLIARAVA-NE--TGAFFFLING 71 (258)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH-HH--TTCEEEEECH
T ss_pred CceeEEecCCCCCchHHHHHHH-HH--hCCeEEEEEc
Confidence 3679999999999998643222 22 2555666544
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=87.58 E-value=0.21 Score=39.54 Aligned_cols=20 Identities=25% Similarity=0.376 Sum_probs=16.6
Q ss_pred CcEEEEecCCcchHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~ 92 (391)
..+++.||+|||||+.+-..
T Consensus 4 m~I~i~GppGsGKsT~a~~L 23 (189)
T d1zaka1 4 LKVMISGAPASGKGTQCELI 23 (189)
T ss_dssp CCEEEEESTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46899999999999976543
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.48 E-value=0.17 Score=41.52 Aligned_cols=21 Identities=19% Similarity=0.123 Sum_probs=16.8
Q ss_pred CcEEEEecCCcchHHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~ 93 (391)
.+++++||+|+|||......+
T Consensus 34 ~~lll~Gp~G~GKTtl~~~i~ 54 (237)
T d1sxjd2 34 PHMLFYGPPGTGKTSTILALT 54 (237)
T ss_dssp CCEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCChHHHHHHHH
Confidence 468999999999998754443
|
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=87.35 E-value=0.19 Score=44.38 Aligned_cols=52 Identities=12% Similarity=0.167 Sum_probs=40.2
Q ss_pred HHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCC--------ChHHHHHHHHHHHHH
Q psy6275 297 KIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFN--------ETEEVKLVDDVFSNA 348 (391)
Q Consensus 297 ~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~--------~~~~r~~~~~~~~~~ 348 (391)
.++..+...++.++|||++.+...+.+...|...|+. ...+|..+.+.|++.
T Consensus 108 ~ll~~~~~~~g~KvlIFs~~~~~ld~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~ 167 (346)
T d1z3ix1 108 YILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNP 167 (346)
T ss_dssp HHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHST
T ss_pred HHHHHHHHhcCCceeEEeehhhhhHHHHHHHhhhhccccccccchhHHHHHHHHHhhhcc
Confidence 4444444455679999999999999999999876554 457889999999874
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=87.30 E-value=0.28 Score=38.35 Aligned_cols=34 Identities=15% Similarity=-0.008 Sum_probs=21.9
Q ss_pred EEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcc
Q psy6275 75 VLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTP 108 (391)
Q Consensus 75 ~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P 108 (391)
+++.|++|+|||+..-...-..-.++..+.++.+
T Consensus 4 ivi~G~~GsGKTT~~~~La~~L~~~~~~~~~~~~ 37 (194)
T d1nksa_ 4 GIVTGIPGVGKSTVLAKVKEILDNQGINNKIINY 37 (194)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 5789999999998764443332234555665543
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=87.15 E-value=0.2 Score=39.32 Aligned_cols=20 Identities=20% Similarity=0.413 Sum_probs=16.3
Q ss_pred cEEEEecCCcchHHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~ 93 (391)
++++.||+|||||+..-...
T Consensus 2 ~I~i~G~pGSGKsT~~~~La 21 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIM 21 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999864444
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.14 E-value=0.16 Score=41.74 Aligned_cols=37 Identities=8% Similarity=0.111 Sum_probs=25.7
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHh------cCCeEEEEc
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLK------QSQRVIYTT 107 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~------~~~~vlvl~ 107 (391)
.|+.+++.||+|+|||...+..+..... .+..++++.
T Consensus 33 ~G~~~li~G~pGsGKT~l~lq~~~~~~~~~~~~~~~~~~~~i~ 75 (251)
T d1szpa2 33 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYID 75 (251)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHTTTTTSCTTTTCCSCEEEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhhhhhhhccCCceEEEEe
Confidence 4577999999999999876555443321 245677774
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.13 E-value=0.19 Score=39.53 Aligned_cols=20 Identities=30% Similarity=0.215 Sum_probs=16.6
Q ss_pred cEEEEecCCcchHHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~ 93 (391)
++++.||+|||||+..-..+
T Consensus 2 ~I~i~G~pGsGKsT~a~~La 21 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLA 21 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68899999999999865544
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.12 E-value=0.19 Score=40.24 Aligned_cols=27 Identities=11% Similarity=0.069 Sum_probs=21.1
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSL 97 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l 97 (391)
.|+-+++.||+|+|||...+..+.+..
T Consensus 22 ~G~v~~i~G~~GsGKT~l~l~la~~~~ 48 (242)
T d1n0wa_ 22 TGSITEMFGEFRTGKTQICHTLAVTCQ 48 (242)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 356799999999999987766665544
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.95 E-value=0.33 Score=41.07 Aligned_cols=89 Identities=18% Similarity=0.148 Sum_probs=56.6
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcH---H
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTT---E 148 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp---~ 148 (391)
|+-+.+.||+|+|||...+..+......+..++|+-....+..+..+.+ +-+. .++++..| +
T Consensus 60 g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~~~~~e~a~~~---GvD~------------d~il~~~~~~~E 124 (269)
T d1mo6a1 60 GRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKL---GVDT------------DSLLVSQPDTGE 124 (269)
T ss_dssp SSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSCCCCHHHHHHH---TCCG------------GGCEEECCSSHH
T ss_pred ceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCccCCHHHHHHh---CCCH------------HHeEEecCCCHH
Confidence 5668999999999999988888777788999999876665654443332 2111 13444433 4
Q ss_pred HHHHHHhcCccccCccceEEEecccccC
Q psy6275 149 ILRNMLYRGSEITREVGWVIFDEIHYMR 176 (391)
Q Consensus 149 ~l~~~l~~~~~~l~~~~~lViDE~h~~~ 176 (391)
.+++.+..- ..-..++++|+|=+-.+.
T Consensus 125 ~~~~~~~~l-~~~~~~~liIiDSi~al~ 151 (269)
T d1mo6a1 125 QALEIADML-IRSGALDIVVIDSVAALV 151 (269)
T ss_dssp HHHHHHHHH-HHTTCEEEEEEECSTTCC
T ss_pred HHHHHHHHH-HhcCCCCEEEEecccccc
Confidence 444333211 112367899999987654
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=86.90 E-value=0.2 Score=39.48 Aligned_cols=21 Identities=19% Similarity=0.327 Sum_probs=16.8
Q ss_pred cEEEEecCCcchHHHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIA 94 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~ 94 (391)
.+++.||+|||||+.+-..+-
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~ 22 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVE 22 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999998754443
|
| >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=86.88 E-value=0.29 Score=40.64 Aligned_cols=76 Identities=13% Similarity=0.072 Sum_probs=49.0
Q ss_pred cHHHHHHHHHH--cCCCcEEEEEcchhhHHHHHHHhhcc---------CCCChHHHHHHHHHHHHH--hhhcchhhccCc
Q psy6275 294 NCFKIVKMIME--RNLAPVIVFSFSKKDCEIYAMQMAKL---------NFNETEEVKLVDDVFSNA--MDVLSEEDRKLP 360 (391)
Q Consensus 294 ~~~~l~~~l~~--~~~~~~iIF~~t~~~~~~la~~L~~~---------g~~~~~~r~~~~~~~~~~--~~~l~~~d~~~~ 360 (391)
++..+.+.+.+ ..+.++||||+.+...+.+...+... |-...++|+.+.+.|++. ..+++.+-
T Consensus 70 K~~~l~~~l~~~~~~g~kviIFs~~~~~~~~l~~~l~~~~~~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vll~~~---- 145 (244)
T d1z5za1 70 KMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSV---- 145 (244)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEEC----
T ss_pred HHHHHHHHHHhhcccccceEEEeeceehHHHHHHHHHhhccceEEEEecccchhccchhhhhhhccccchhccccc----
Confidence 34455555443 24579999999999999888877543 333457888888888763 34454331
Q ss_pred chHhHHHHHHhhhhhccCC
Q psy6275 361 QIENILPLLRRGIGIHHGV 379 (391)
Q Consensus 361 ~~~~~~~~l~~GI~~~h~~ 379 (391)
...+.|++++.++
T Consensus 146 ------~~~g~Glnl~~a~ 158 (244)
T d1z5za1 146 ------KAGGFGINLTSAN 158 (244)
T ss_dssp ------CTTCCCCCCTTCS
T ss_pred ------cccccccccchhh
Confidence 2445677776554
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=86.87 E-value=0.39 Score=37.72 Aligned_cols=19 Identities=32% Similarity=0.513 Sum_probs=14.4
Q ss_pred CCcEE-EEecCCcchHHHHH
Q psy6275 72 NQSVL-VSAHTSAGKTVVAE 90 (391)
Q Consensus 72 ~~~~l-i~apTGsGKT~~~~ 90 (391)
++-++ |.||+|||||+.+-
T Consensus 21 ~~~iIgI~G~~GSGKSTla~ 40 (198)
T d1rz3a_ 21 GRLVLGIDGLSRSGKTTLAN 40 (198)
T ss_dssp SSEEEEEEECTTSSHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 33344 99999999998753
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=86.77 E-value=0.38 Score=40.64 Aligned_cols=96 Identities=15% Similarity=0.087 Sum_probs=59.0
Q ss_pred HHHHHhc------CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCC
Q psy6275 65 AILCIEN------NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINP 138 (391)
Q Consensus 65 ~i~~i~~------~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~ 138 (391)
+++.++. |+-+.+.||.|+|||...+..+....+.++.++|+--...+..+..+. +.-+.
T Consensus 44 ~lD~~Lg~GGip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~~~~~~~a~~---~Gvd~----------- 109 (268)
T d1xp8a1 44 SLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARA---LGVNT----------- 109 (268)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHH---TTCCG-----------
T ss_pred HHHHHhcCCCccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCccCCHHHHHH---hCCCc-----------
Confidence 4555553 356789999999999988777777777889999997655554443322 21111
Q ss_pred CCCEEEEc---HHHHHHHHhcCccccCccceEEEecccccC
Q psy6275 139 SSSCLIMT---TEILRNMLYRGSEITREVGWVIFDEIHYMR 176 (391)
Q Consensus 139 ~~~I~v~T---p~~l~~~l~~~~~~l~~~~~lViDE~h~~~ 176 (391)
.++++.. .+..++++..- ..-..++++|+|=+-.+.
T Consensus 110 -d~i~~~~~~~~E~~~~~~~~l-~~~~~~~liIiDSi~al~ 148 (268)
T d1xp8a1 110 -DELLVSQPDNGEQALEIMELL-VRSGAIDVVVVDSVAALT 148 (268)
T ss_dssp -GGCEEECCSSHHHHHHHHHHH-HTTTCCSEEEEECTTTCC
T ss_pred -hhEEEEcCCCHHHHHHHHHHH-HhcCCCcEEEEecccccc
Confidence 1344443 34444333221 111358899999987654
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.51 E-value=0.14 Score=40.24 Aligned_cols=17 Identities=24% Similarity=0.372 Sum_probs=14.5
Q ss_pred CcEEEEecCCcchHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVA 89 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~ 89 (391)
.-++++|++|||||+.+
T Consensus 15 ~liil~G~pGsGKST~a 31 (172)
T d1yj5a2 15 EVVVAVGFPGAGKSTFI 31 (172)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 45899999999999854
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=86.01 E-value=0.25 Score=39.25 Aligned_cols=20 Identities=20% Similarity=0.252 Sum_probs=16.1
Q ss_pred cEEEEecCCcchHHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~ 93 (391)
-+++.||+|||||+.+-..+
T Consensus 8 iI~i~G~pGSGKsT~a~~La 27 (194)
T d1qf9a_ 8 VVFVLGGPGSGKGTQCANIV 27 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999764444
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.81 E-value=0.14 Score=40.57 Aligned_cols=21 Identities=29% Similarity=0.316 Sum_probs=16.2
Q ss_pred CCcEEEEecCCcchHHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~ 92 (391)
|..++++|++|||||+.+-..
T Consensus 19 g~vI~L~G~pGSGKTTiAk~L 39 (195)
T d1x6va3 19 GCTVWLTGLSGAGKTTVSMAL 39 (195)
T ss_dssp CEEEEEESSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 345779999999999976433
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=85.79 E-value=0.46 Score=36.54 Aligned_cols=33 Identities=24% Similarity=0.226 Sum_probs=22.1
Q ss_pred EEEEecCCcchHHHHHHHHHHHHhcCCeEEEEc
Q psy6275 75 VLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTT 107 (391)
Q Consensus 75 ~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~ 107 (391)
+-++|+.|||||+.....+-..-.++.++.++.
T Consensus 4 i~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik 36 (165)
T d1xjca_ 4 WQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 36 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 359999999999875433333334566777764
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.66 E-value=0.18 Score=39.80 Aligned_cols=18 Identities=28% Similarity=0.501 Sum_probs=15.6
Q ss_pred CCcEEEEecCCcchHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVA 89 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~ 89 (391)
|+-++++||+|+|||+..
T Consensus 2 G~iivl~GpsG~GK~tl~ 19 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVV 19 (182)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 567899999999999863
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=85.29 E-value=0.16 Score=41.81 Aligned_cols=27 Identities=11% Similarity=0.079 Sum_probs=21.9
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSL 97 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l 97 (391)
.|.-+++.|++|+|||...+..+.+..
T Consensus 33 ~G~l~~i~G~~G~GKT~~~l~~a~~~~ 59 (258)
T d2i1qa2 33 SQSVTEFAGVFGSGKTQIMHQSCVNLQ 59 (258)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 357799999999999998777666654
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=85.26 E-value=0.16 Score=44.52 Aligned_cols=19 Identities=26% Similarity=0.321 Sum_probs=16.8
Q ss_pred cCCcEEEEecCCcchHHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVA 89 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~ 89 (391)
.++++++.||+|+|||..+
T Consensus 27 ~~h~vLl~G~pG~GKT~la 45 (333)
T d1g8pa_ 27 GIGGVLVFGDRGTGKSTAV 45 (333)
T ss_dssp GGCCEEEECCGGGCTTHHH
T ss_pred CCCeEEEECCCCccHHHHH
Confidence 4578999999999999875
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.25 E-value=0.22 Score=39.64 Aligned_cols=20 Identities=25% Similarity=0.310 Sum_probs=15.9
Q ss_pred cEEEEecCCcchHHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~ 93 (391)
-+++.||+|||||+.+-..+
T Consensus 10 iI~i~GppGSGKsT~a~~La 29 (196)
T d1ukza_ 10 VIFVLGGPGAGKGTQCEKLV 29 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999998764443
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.20 E-value=0.19 Score=39.86 Aligned_cols=17 Identities=18% Similarity=0.509 Sum_probs=14.7
Q ss_pred CcEEEEecCCcchHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVA 89 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~ 89 (391)
+-++++||+|+|||...
T Consensus 2 rpIvl~GpsG~GK~tl~ 18 (186)
T d1gkya_ 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46899999999999853
|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.19 E-value=1.3 Score=34.01 Aligned_cols=68 Identities=18% Similarity=0.130 Sum_probs=53.4
Q ss_pred cCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCccc-----------CCCCCEEEEcHHHHHHHHhcCccccCccceE
Q psy6275 99 QSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTI-----------NPSSSCLIMTTEILRNMLYRGSEITREVGWV 167 (391)
Q Consensus 99 ~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~-----------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~l 167 (391)
...+++|.+.++.-+++++..+....-.+..++|+.+. ....+|+|+|. +......+.++++|
T Consensus 26 ~~~k~iIF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~l~~f~~~~~~iLv~Td------v~~rGiDi~~v~~V 99 (162)
T d1fuka_ 26 SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD------LLARGIDVQQVSLV 99 (162)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG------GGTTTCCCCSCSEE
T ss_pred CCCcEEEEEEEEchHHHHHHHHhhcCceEEEeccCCchhhHHHHHHHHhhcccceeeccc------cccccccCCCceEE
Confidence 45789999999999999999998887788889988763 34678999997 33445567788888
Q ss_pred EEecc
Q psy6275 168 IFDEI 172 (391)
Q Consensus 168 ViDE~ 172 (391)
|.=+.
T Consensus 100 I~~d~ 104 (162)
T d1fuka_ 100 INYDL 104 (162)
T ss_dssp EESSC
T ss_pred EEecc
Confidence 87554
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=84.95 E-value=0.23 Score=39.52 Aligned_cols=21 Identities=14% Similarity=0.166 Sum_probs=17.0
Q ss_pred CcEEEEecCCcchHHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~ 93 (391)
-.+++.||+|||||+.+...+
T Consensus 7 mrIiliG~PGSGKtT~a~~La 27 (189)
T d2ak3a1 7 LRAAIMGAPGSGKGTVSSRIT 27 (189)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eeEEEECCCCCCHHHHHHHHH
Confidence 468999999999999865544
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.68 E-value=0.25 Score=39.23 Aligned_cols=20 Identities=25% Similarity=0.267 Sum_probs=16.0
Q ss_pred cEEEEecCCcchHHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~ 93 (391)
-+++.||+|||||+.+-..+
T Consensus 3 iI~i~GppGSGKsT~a~~La 22 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIV 22 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37899999999999865443
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=84.20 E-value=0.34 Score=37.34 Aligned_cols=20 Identities=10% Similarity=0.243 Sum_probs=16.2
Q ss_pred cEEEEecCCcchHHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~ 93 (391)
++++.|++|+|||++.-...
T Consensus 3 ~IvliG~~G~GKSTig~~La 22 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLA 22 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 57888999999999865444
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.90 E-value=0.34 Score=37.96 Aligned_cols=21 Identities=19% Similarity=0.132 Sum_probs=16.7
Q ss_pred CcEEEEecCCcchHHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~ 93 (391)
..+++.||+|||||+..-..+
T Consensus 3 mrIvl~G~pGSGKtT~a~~La 23 (180)
T d1akya1 3 IRMVLIGPPGAGKGTQAPNLQ 23 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 357899999999999875544
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=83.86 E-value=0.56 Score=37.26 Aligned_cols=32 Identities=9% Similarity=-0.046 Sum_probs=20.4
Q ss_pred EEEEecCCcchHHHHHHHHHHHHhcCCeEEEE
Q psy6275 75 VLVSAHTSAGKTVVAEYAIASSLKQSQRVIYT 106 (391)
Q Consensus 75 ~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl 106 (391)
++++|.+|||||+.+-...-..-..+.++.++
T Consensus 5 i~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~ 36 (213)
T d1bifa1 5 IVMVGLPARGKTYISKKLTRYLNFIGVPTREF 36 (213)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCCCeEE
Confidence 68999999999998744432221234455444
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.67 E-value=0.45 Score=39.07 Aligned_cols=50 Identities=10% Similarity=0.165 Sum_probs=32.3
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhc------CCeEEEEcccHHHHHHHHHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQ------SQRVIYTTPIKALSNQKYREF 120 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~------~~~vlvl~P~~~L~~q~~~~~ 120 (391)
.|+-+++.||+|+|||...+..+.+.... ...++++.....+.......+
T Consensus 36 ~G~~~~i~G~~GsGKT~lalq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (258)
T d1v5wa_ 36 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDI 91 (258)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhhhhcccccceEEEechHHHHHHHHHHHH
Confidence 45679999999999999876666554322 345677765554444443333
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.21 E-value=0.34 Score=38.51 Aligned_cols=17 Identities=29% Similarity=0.524 Sum_probs=14.5
Q ss_pred CcEEEEecCCcchHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVA 89 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~ 89 (391)
+-++++||+|+|||...
T Consensus 1 rpIvl~GPsGsGK~tl~ 17 (190)
T d1lvga_ 1 RPVVLSGPSGAGKSTLL 17 (190)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35899999999999864
|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=83.05 E-value=1.2 Score=33.23 Aligned_cols=49 Identities=6% Similarity=-0.016 Sum_probs=41.2
Q ss_pred cCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCC----CCCEEEEcH
Q psy6275 99 QSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINP----SSSCLIMTT 147 (391)
Q Consensus 99 ~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~----~~~I~v~Tp 147 (391)
.+.++||.++|+.-++++++.++...-.+..++++..... ..+++|+|.
T Consensus 34 ~~~k~IVFc~t~~~ae~la~~L~~~G~~~~~~H~~~~~~~~~~~~~~vlvaTd 86 (138)
T d1jr6a_ 34 KGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTNGDVVVVATD 86 (138)
T ss_dssp TTSCEEEECSCHHHHHHHHHHHHHHTCEEEEECTTCCSCCCTTSSCEEEEESS
T ss_pred CCCCEEEEeCcHHHHHHHHHHHhccccchhhhhccchhhhhhhhhcceeehhH
Confidence 4678999999999999999999988778888888877543 567999986
|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.80 E-value=4.7 Score=30.73 Aligned_cols=88 Identities=15% Similarity=0.093 Sum_probs=61.8
Q ss_pred EEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCccc-----------CCCCCEEE
Q psy6275 76 LVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTI-----------NPSSSCLI 144 (391)
Q Consensus 76 li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~-----------~~~~~I~v 144 (391)
.+.-+..-.|..+ +..++.. ..+.+++|.+.++.-++.++..++.....+..++|+... ..+.+|+|
T Consensus 12 ~v~v~~~~~K~~~-L~~ll~~-~~~~k~iiF~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~fk~g~~~iLv 89 (168)
T d2j0sa2 12 FVAVEREEWKFDT-LCDLYDT-LTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLI 89 (168)
T ss_dssp EEEESSTTHHHHH-HHHHHHH-HTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEE
T ss_pred EEEecChHHHHHH-HHHHHHh-CCCCceEEEeeeHHHHHHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHhcCCccEEe
Confidence 3444444456443 3334433 245799999999999999999999887788889998764 23578999
Q ss_pred EcHHHHHHHHhcCccccCccceEEEec
Q psy6275 145 MTTEILRNMLYRGSEITREVGWVIFDE 171 (391)
Q Consensus 145 ~Tp~~l~~~l~~~~~~l~~~~~lViDE 171 (391)
+|. +......+.++++||.=+
T Consensus 90 ~Td------~~~rGiDi~~v~~VIn~d 110 (168)
T d2j0sa2 90 STD------VWARGLDVPQVSLIINYD 110 (168)
T ss_dssp ECG------GGSSSCCCTTEEEEEESS
T ss_pred ccc------hhcccccccCcceEEEec
Confidence 997 334556677888887533
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=82.46 E-value=0.44 Score=38.42 Aligned_cols=19 Identities=32% Similarity=0.408 Sum_probs=16.2
Q ss_pred cCCcEEEEecCCcchHHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVA 89 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~ 89 (391)
.|+-++++||+|+|||...
T Consensus 1 ~G~livi~GPSG~GK~tl~ 19 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLI 19 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3677899999999999864
|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.43 E-value=2.1 Score=32.98 Aligned_cols=69 Identities=9% Similarity=-0.068 Sum_probs=52.9
Q ss_pred cCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCccc-----------CCCCCEEEEcHHHHHHHHhcCccccCccceE
Q psy6275 99 QSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTI-----------NPSSSCLIMTTEILRNMLYRGSEITREVGWV 167 (391)
Q Consensus 99 ~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~-----------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~l 167 (391)
.+.++||.+.++.-++.++..+....-.+..++|+... ....+++|+|.- ......+..++++
T Consensus 31 ~~~k~iVF~~~~~~~~~l~~~L~~~g~~~~~~h~~~~~~~r~~~~~~f~~~~~~ilv~Td~------~~~Gid~~~v~~V 104 (171)
T d1s2ma2 31 QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDL------LTRGIDIQAVNVV 104 (171)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSC------SSSSCCCTTEEEE
T ss_pred CCCceEEEEeeeehhhHhHHhhhcccccccccccccchhhhhhhhhhcccCccccccchhH------hhhccccceeEEE
Confidence 46799999999999999999999887788888887763 345788998872 3444567788888
Q ss_pred EEeccc
Q psy6275 168 IFDEIH 173 (391)
Q Consensus 168 ViDE~h 173 (391)
|.=+..
T Consensus 105 I~~d~p 110 (171)
T d1s2ma2 105 INFDFP 110 (171)
T ss_dssp EESSCC
T ss_pred EecCCc
Confidence 855544
|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=81.32 E-value=1.9 Score=34.25 Aligned_cols=65 Identities=8% Similarity=0.037 Sum_probs=48.7
Q ss_pred cCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCccc-----------CCCCCEEEEcHHHHHHHHhcCccccCccceE
Q psy6275 99 QSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTI-----------NPSSSCLIMTTEILRNMLYRGSEITREVGWV 167 (391)
Q Consensus 99 ~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~-----------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~l 167 (391)
.+.++||.++|+.-+..++..+....-.+..++|+... ....+|+|+|. +......+.++++|
T Consensus 29 ~~~~~IIF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ilvaTd------~~~~GiD~p~v~~V 102 (200)
T d1oywa3 29 RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATV------AFGMGINKPNVRFV 102 (200)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECT------TSCTTTCCTTCCEE
T ss_pred CCCCEEEEEeeehhhHHhhhhhccCCceeEEecCCCcHHHHHHHHHHHhcccceEEEecc------hhhhccCCCCCCEE
Confidence 45689999999999999999998887788888888763 33567888887 22334455677777
Q ss_pred EE
Q psy6275 168 IF 169 (391)
Q Consensus 168 Vi 169 (391)
|.
T Consensus 103 I~ 104 (200)
T d1oywa3 103 VH 104 (200)
T ss_dssp EE
T ss_pred EE
Confidence 64
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.31 E-value=0.16 Score=42.69 Aligned_cols=21 Identities=19% Similarity=0.343 Sum_probs=18.4
Q ss_pred HhcCCcEEEEecCCcchHHHH
Q psy6275 69 IENNQSVLVSAHTSAGKTVVA 89 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~ 89 (391)
+..|+.+.++||+|||||+..
T Consensus 37 i~~Ge~vaivG~sGsGKSTLl 57 (251)
T d1jj7a_ 37 LRPGEVTALVGPNGSGKSTVA 57 (251)
T ss_dssp ECTTCEEEEECSTTSSHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHH
Confidence 467899999999999999864
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=81.10 E-value=0.26 Score=41.31 Aligned_cols=18 Identities=22% Similarity=0.294 Sum_probs=14.0
Q ss_pred EEEEecCCcchHHHHHHH
Q psy6275 75 VLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 75 ~li~apTGsGKT~~~~~~ 92 (391)
++++||+|+|||.+.-..
T Consensus 49 l~l~GppGtGKT~l~~~l 66 (287)
T d1w5sa2 49 YGSIGRVGIGKTTLAKFT 66 (287)
T ss_dssp EECTTCCSSSHHHHHHHH
T ss_pred EEeECCCCCCHHHHHHHH
Confidence 456799999999986443
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=81.02 E-value=0.73 Score=37.50 Aligned_cols=31 Identities=23% Similarity=0.371 Sum_probs=21.9
Q ss_pred EEEEecCCcchHHHHHHHHHHHHhcCCeEEEE
Q psy6275 75 VLVSAHTSAGKTVVAEYAIASSLKQSQRVIYT 106 (391)
Q Consensus 75 ~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl 106 (391)
+++.|+.|+|||+. +-.+++++..+.++.++
T Consensus 3 i~v~G~~GsGKTTL-l~~ll~~~~~~~~~~iv 33 (244)
T d1yrba1 3 VVFVGTAGSGKTTL-TGEFGRYLEDNYKVAYV 33 (244)
T ss_dssp EEEECSTTSSHHHH-HHHHHHHHTTTSCEEEE
T ss_pred EEEEcCCCCcHHHH-HHHHHHHHhhCCeEEEE
Confidence 67999999999976 33445555555666655
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.93 E-value=0.37 Score=37.93 Aligned_cols=18 Identities=6% Similarity=0.303 Sum_probs=15.5
Q ss_pred CCcEEEEecCCcchHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVA 89 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~ 89 (391)
.+-++++||+|+|||...
T Consensus 3 ~k~ivl~Gpsg~GK~tl~ 20 (178)
T d1kgda_ 3 RKTLVLLGAHGVGRRHIK 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 467899999999999864
|
| >d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.90 E-value=0.56 Score=40.67 Aligned_cols=32 Identities=19% Similarity=0.165 Sum_probs=22.7
Q ss_pred CcHHHHHHHH--------HHhcCCc--EEEEecCCcchHHHH
Q psy6275 58 LDPFQKEAIL--------CIENNQS--VLVSAHTSAGKTVVA 89 (391)
Q Consensus 58 ~~~~Q~~~i~--------~i~~~~~--~li~apTGsGKT~~~ 89 (391)
+..-|.+.+. .+.+|.| ++..|+||||||.+.
T Consensus 52 ~~~~q~~vf~~~~~~lv~~~l~G~n~~i~aYGqtgSGKTyT~ 93 (323)
T d1bg2a_ 52 SSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTM 93 (323)
T ss_dssp TTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCcceeeecccCCCCceec
Confidence 4444555543 3466765 789999999999885
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=80.63 E-value=0.88 Score=37.92 Aligned_cols=54 Identities=15% Similarity=0.038 Sum_probs=33.4
Q ss_pred hcCCcEEEEecCCcchHHHHHHHHHHHHh----------cCCeEEEEcccHHHHHHHHHHHHHhc
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEYAIASSLK----------QSQRVIYTTPIKALSNQKYREFEEQF 124 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~~~~~~l~----------~~~~vlvl~P~~~L~~q~~~~~~~~~ 124 (391)
..|.-.++.|++|+|||+..+..+..... .+.+++|+.-- .-..++..++....
T Consensus 27 ~pg~~~~i~G~~G~GKS~l~l~la~~ia~g~~~~~~~~~~~~~vl~~~~E-~~~~~~~~Rl~~~~ 90 (274)
T d1nlfa_ 27 VAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAE-DPPTAIHHRLHALG 90 (274)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESS-SCHHHHHHHHHHHH
T ss_pred cCCcEEEEEeCCCCCHHHHHHHHHHHHHcCCCcccccccCCCceEEEecc-chHHHHHHHHHHHh
Confidence 45778899999999999876555544321 23468777532 22344444554443
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=80.57 E-value=0.21 Score=41.98 Aligned_cols=21 Identities=24% Similarity=0.485 Sum_probs=18.3
Q ss_pred HhcCCcEEEEecCCcchHHHH
Q psy6275 69 IENNQSVLVSAHTSAGKTVVA 89 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~ 89 (391)
+..|+.+.++||+|||||+..
T Consensus 38 i~~Ge~iaivG~sGsGKSTLl 58 (253)
T d3b60a1 38 IPAGKTVALVGRSGSGKSTIA 58 (253)
T ss_dssp ECTTCEEEEEECTTSSHHHHH
T ss_pred EcCCCEEEEECCCCChHHHHH
Confidence 467899999999999999864
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=80.52 E-value=0.76 Score=40.51 Aligned_cols=32 Identities=16% Similarity=0.209 Sum_probs=22.3
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEE
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYT 106 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl 106 (391)
++.+++.||+|+|||..+...+-.. ++.++.+
T Consensus 154 ~~~~~~~g~~~~gk~~~~~~~~~~~---~~~~i~i 185 (362)
T d1svma_ 154 KRYWLFKGPIDSGKTTLAAALLELC---GGKALNV 185 (362)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH---CCEEECC
T ss_pred cCeEEEECCCCCCHHHHHHHHHHHc---CCCEEEE
Confidence 3579999999999998754443333 5566555
|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.14 E-value=1.9 Score=33.17 Aligned_cols=68 Identities=10% Similarity=-0.046 Sum_probs=50.8
Q ss_pred cCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCccc-----------CCCCCEEEEcHHHHHHHHhcCccccCccceE
Q psy6275 99 QSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTI-----------NPSSSCLIMTTEILRNMLYRGSEITREVGWV 167 (391)
Q Consensus 99 ~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~-----------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~l 167 (391)
...+++|.++++.-++.+...+.+..-.+..++|+.+. +...+++|+|.- ......+..++++
T Consensus 26 ~~~k~iIF~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~l~~F~~g~~~iLv~T~~------~~~Gid~~~~~~v 99 (168)
T d1t5ia_ 26 EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL------FGRGMDIERVNIA 99 (168)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC------CSTTCCGGGCSEE
T ss_pred CCCeEEEEEeeeecchhhhhhhccccccccccccccchhhhhhhhhhhccccceeeecccc------ccchhhcccchhh
Confidence 45689999999999999999998887788889998763 345778888852 2334456677777
Q ss_pred EEecc
Q psy6275 168 IFDEI 172 (391)
Q Consensus 168 ViDE~ 172 (391)
|.=+.
T Consensus 100 i~~~~ 104 (168)
T d1t5ia_ 100 FNYDM 104 (168)
T ss_dssp EESSC
T ss_pred hhhhc
Confidence 66554
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=80.03 E-value=1.1 Score=34.59 Aligned_cols=72 Identities=13% Similarity=0.075 Sum_probs=46.9
Q ss_pred hcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEE-EcH
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLI-MTT 147 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v-~Tp 147 (391)
.+++++++.|.=|++|+.++.+. ..+.++.++.-+.+-+.++.+.+..... +....-+.......+++| +||
T Consensus 16 ~~~k~vlIlGaGGaarai~~al~-----~~g~~i~I~nRt~~ka~~l~~~~~~~~~-~~~~~~~~~~~~~~dliIN~Tp 88 (170)
T d1nyta1 16 RPGLRILLIGAGGASRGVLLPLL-----SLDCAVTITNRTVSRAEELAKLFAHTGS-IQALSMDELEGHEFDLIINATS 88 (170)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHH-----HTTCEEEEECSSHHHHHHHHHHTGGGSS-EEECCSGGGTTCCCSEEEECCS
T ss_pred CCCCEEEEECCcHHHHHHHHHhc-----ccceEEEeccchHHHHHHHHHHHhhccc-ccccccccccccccceeecccc
Confidence 35789999999999999886532 2356777787888888877776665442 222222222334567777 566
|