Diaphorina citri psyllid: psy6552


Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250----
MRRRAGVGAIQKQKLEQEKYKDKGTSIQENQLEQLSQHLNTFRDKLESFASEYKNEIKKDAQFRRHFQEMCASIGVDPLASRKGFWSLLGMGDFYYELSVQIVEVCLATNYKNGGLILLDELRTRLVKSRGKSLQHQDITNEDLLAAAKKLKIFGNGFSIIPIGQGQYLVQSIPGELSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQSPQEHLYWFPSLFTECMNAEKETI
ccccccHHHHHccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccEEHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccccEEEEEEccCEEEEEcccccccHHHHHHHHHHHHHccccccHHHHHHHccccHHHHHHHHHHHHHcccEEEEcccccccccECccccccccccccccc
****AGVGAIQ*********************EQLSQHLNTFRDK*************KDAQFRRHFQEMCASIGVDPLASRKGFWSLLGMGDFYYELSVQIVEVCLATNYKNGGLILLDELRTRLVK**G*****QDITNEDLLAAAKKLKIFGNGFSIIPIGQGQYLVQSIPGELSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQSPQEHLYWFPSLFTECM*******
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MRRRAGVGAIQKQKLEQEKYKDKGTSIQENQxxxxxxxxxxxxxxxxxxxxxYKNEIKKDAQFRRHFQEMCASIGVDPLASRKGFWSLLGMGDFYYELSVQIVEVCLATNYKNGGLILLDELRTRLVKSRGKSLQHQDITNEDLLAAAKKLKIFGNGFSIIPIGQGQYLVQSIPGELSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQSPQEHLYWFPSLFTECMNAEKETI

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Vacuolar-sorting protein SNF8 Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. The MVB pathway mediates delivery of transmembrane proteins into the lumen of the lysosome for degradation. The ESCRT-II complex is probably involved in the recruitment of the ESCRT-III complex. The ESCRT-II complex may also play a role in transcription regulation by participating in derepression of transcription by RNA polymerase II, possibly via its interaction with ELL. Required for degradation of both endocytosed EGF and EGFR, but not for the EGFR ligand-mediated internalization.very confidentQ9CZ28
Vacuolar-sorting protein SNF8 Required for degradation of both endocytosed EGF and EGFR, but not for the EGFR ligand-mediated internalization (By similarity). Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. The MVB pathway mediates delivery of transmembrane proteins into the lumen of the lysosome for degradation. The ESCRT-II complex is probably involved in the recruitment of the ESCRT-III complex. The ESCRT-II complex may also play a role in transcription regulation by participating in derepression of transcription by RNA polymerase II, possibly via its interaction with ELL.very confidentQ5RK19
Vacuolar-sorting protein SNF8 Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. The MVB pathway mediates delivery of transmembrane proteins into the lumen of the lysosome for degradation. The ESCRT-II complex is probably involved in the recruitment of the ESCRT-III complex. The ESCRT-II complex may also play a role in transcription regulation by participating in derepression of transcription by RNA polymerase II, possibly via its interaction with ELL. Required for degradation of both endocytosed EGF and EGFR, but not for the EGFR ligand-mediated internalization. It is also required for the degradation of CXCR4.very confidentQ96H20

Prediction of Gene Ontology Terms ?

GO Term ?Description ?Confidence Level ?Parent GO Terms ?
GO:0005667 [CC]transcription factor complexconfidentGO:0043234, GO:0044446, GO:0032991, GO:0005575, GO:0031981, GO:0043233, GO:0005634, GO:0044464, GO:0005623, GO:0005622, GO:0005654, GO:0070013, GO:0043229, GO:0044428, GO:0031974, GO:0044424, GO:0044451, GO:0043227, GO:0043226, GO:0044422, GO:0043231
GO:0006357 [BP]regulation of transcription from RNA polymerase II promoterconfidentGO:0009889, GO:0019219, GO:0080090, GO:0019222, GO:0060255, GO:0031326, GO:0031323, GO:0051252, GO:2000112, GO:0050794, GO:0050789, GO:0006355, GO:0010556, GO:0065007, GO:0051171, GO:2001141, GO:0008150, GO:0010468
GO:0010797 [BP]regulation of multivesicular body size involved in endosome transportconfidentGO:0016197, GO:0051234, GO:0006810, GO:0046907, GO:0071840, GO:0032509, GO:0016043, GO:0090066, GO:0010796, GO:0044765, GO:0065007, GO:0044763, GO:0044699, GO:0051036, GO:0008150, GO:0009987, GO:0065008, GO:0051649, GO:0051179, GO:0032535, GO:0051641
GO:0044444 [CC]cytoplasmic partconfidentGO:0005737, GO:0044464, GO:0005623, GO:0005622, GO:0005575, GO:0044424
GO:0008134 [MF]transcription factor bindingconfidentGO:0003674, GO:0005488, GO:0005515
GO:0005829 [CC]cytosolprobableGO:0005737, GO:0044464, GO:0005623, GO:0005622, GO:0005575, GO:0044444, GO:0044424
GO:0042981 [BP]regulation of apoptotic processprobableGO:0050794, GO:0043067, GO:0008150, GO:0065007, GO:0010941, GO:0050789
GO:0016044 [BP]cellular membrane organizationprobableGO:0009987, GO:0016043, GO:0061024, GO:0008150, GO:0071840, GO:0044763, GO:0044699
GO:0008593 [BP]regulation of Notch signaling pathwayprobableGO:0009966, GO:0048583, GO:0050794, GO:0065007, GO:0023051, GO:0008150, GO:0010646, GO:0050789
GO:0045450 [BP]bicoid mRNA localizationprobableGO:0048610, GO:0009994, GO:0030154, GO:0048468, GO:0007569, GO:0007292, GO:0009790, GO:0008358, GO:0044702, GO:0000578, GO:0007309, GO:0007308, GO:0009798, GO:0035282, GO:0010259, GO:0007275, GO:0044699, GO:0048609, GO:0007389, GO:0008595, GO:0000003, GO:0070727, GO:0009948, GO:0048869, GO:0060811, GO:0060810, GO:0007276, GO:0006403, GO:0048477, GO:0032502, GO:0048599, GO:0032501, GO:0009880, GO:0032504, GO:0009987, GO:0019953, GO:0007281, GO:0022414, GO:0007314, GO:0008150, GO:0003002, GO:0022412, GO:0007351, GO:0007350, GO:0051179, GO:0051641, GO:0044767, GO:0033036, GO:0009952, GO:0044707, GO:0003006, GO:0048856, GO:0008298, GO:0044763
GO:0000814 [CC]ESCRT II complexprobableGO:0043234, GO:0005575, GO:0032991, GO:0031090, GO:0043227, GO:0016020, GO:0044464, GO:0043229, GO:0005623, GO:0005737, GO:0044446, GO:0044444, GO:0044440, GO:0043231, GO:0044424, GO:0044425, GO:0005622, GO:0005768, GO:0043226, GO:0044422, GO:0010008
GO:0008283 [BP]cell proliferationprobableGO:0008150, GO:0044699
GO:0005816 [CC]spindle pole bodyprobableGO:0043234, GO:0005575, GO:0005819, GO:0032991, GO:0005622, GO:0043232, GO:0005856, GO:0044464, GO:0005623, GO:0005815, GO:0044446, GO:0043229, GO:0044430, GO:0044422, GO:0044424, GO:0043228, GO:0000922, GO:0043226, GO:0015630
GO:0006351 [BP]transcription, DNA-dependentprobableGO:0032774, GO:0090304, GO:0044249, GO:0034641, GO:0006807, GO:0034645, GO:1901362, GO:1901360, GO:1901576, GO:0044260, GO:0071704, GO:0010467, GO:0018130, GO:0006139, GO:0009987, GO:0006725, GO:0009058, GO:0009059, GO:0008150, GO:0008152, GO:0034654, GO:0046483, GO:0016070, GO:0044238, GO:0044271, GO:0044237, GO:0043170, GO:0019438
GO:0031902 [CC]late endosome membraneprobableGO:0005737, GO:0005575, GO:0005770, GO:0031090, GO:0043227, GO:0016020, GO:0044464, GO:0043229, GO:0005623, GO:0043231, GO:0044446, GO:0044444, GO:0044440, GO:0044424, GO:0005622, GO:0005768, GO:0043226, GO:0044422, GO:0010008
GO:0043328 [BP]protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathwayprobableGO:0032511, GO:0008104, GO:0072666, GO:0072665, GO:0044248, GO:0045324, GO:0043632, GO:0044699, GO:0044267, GO:1901575, GO:0051234, GO:0044260, GO:0070727, GO:0043162, GO:0051179, GO:0071704, GO:0006810, GO:0071702, GO:0006508, GO:0051641, GO:0034613, GO:0044238, GO:0072594, GO:0032509, GO:0019941, GO:0006605, GO:0045184, GO:0015031, GO:0044765, GO:0044265, GO:0008150, GO:0030163, GO:0008152, GO:0051649, GO:0044257, GO:0006623, GO:0009056, GO:0009057, GO:0016482, GO:0016197, GO:0051603, GO:0033036, GO:0007034, GO:0046907, GO:0019538, GO:0044237, GO:0043170, GO:0006511, GO:0033365, GO:0044763, GO:0009987, GO:0006886
GO:0008340 [BP]determination of adult lifespanprobableGO:0032502, GO:0032501, GO:0007568, GO:0044707, GO:0044767, GO:0010259, GO:0008150, GO:0007275, GO:0044699
GO:0007127 [BP]meiosis IprobableGO:0007126, GO:0048610, GO:0051321, GO:0000003, GO:0009987, GO:0008150, GO:0044763, GO:0044699, GO:0022402, GO:0007049
GO:0045141 [BP]meiotic telomere clusteringprobableGO:0006996, GO:0007126, GO:0048610, GO:0051321, GO:0070192, GO:0044699, GO:0071840, GO:0009987, GO:0034397, GO:0051179, GO:0008150, GO:0016043, GO:0050000, GO:0022402, GO:0007049, GO:0044763, GO:0051641, GO:0000003, GO:0051640, GO:0051276
GO:0000433 [BP]negative regulation of transcription from RNA polymerase II promoter by glucoseprobableGO:0009991, GO:0009892, GO:0080090, GO:0009890, GO:0031327, GO:0031326, GO:0031324, GO:0031323, GO:0031667, GO:0010629, GO:0070887, GO:0007154, GO:0000430, GO:0000437, GO:0050789, GO:0044699, GO:0045014, GO:0010605, GO:0045013, GO:0000122, GO:0031670, GO:0050896, GO:2000112, GO:2000113, GO:0008150, GO:0019219, GO:0010556, GO:0065007, GO:0048519, GO:0010468, GO:0046015, GO:0071496, GO:0045934, GO:0060255, GO:0007584, GO:0009987, GO:0009889, GO:0051716, GO:0050794, GO:0045990, GO:0045892, GO:0051171, GO:0051172, GO:2001141, GO:0042221, GO:0019222, GO:0031668, GO:0031669, GO:0009605, GO:0051253, GO:0051252, GO:0000429, GO:0006355, GO:0006357, GO:0044763, GO:0010558, GO:0048523
GO:0051300 [BP]spindle pole body organizationprobableGO:0006996, GO:0031023, GO:0007010, GO:0071822, GO:0043933, GO:0022402, GO:0009987, GO:0016043, GO:0008150, GO:0007017, GO:0000226, GO:0044699, GO:0071840, GO:0044763, GO:0007049

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!


Spatial Structural Prediction

Structural Models Based on Templates

Template: 3CUQ, chain A
Confidence level:very confident
Coverage over the Query: 33-249
View the alignment between query and template
View the model in PyMOL
Template: 1U5T, chain A
Confidence level:very confident
Coverage over the Query: 23-246
View the alignment between query and template
View the model in PyMOL