Diaphorina citri psyllid: psy6930


Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160--
MAKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDELPCQGLGEHAHFSNFGMAFLTLFRVDMDMDKSSHMDKSSHMDKSSHKDTHLHSIEGRDNSSYHTSSLKDNSSLKDKSSKDKSSRKLKTNGRQQSMSDPSSINVNHKNNLDTKI
cHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccEEEccccccccccccccccccHHHHHHHHHHHcccccccHHHccccccccccccccccccccccccccCECccccccccccccccccHHHHHHHcccccccccccccEEEcccccccccc
*AKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDELPCQGLGEHAHFSNFGMAFLTLFRVDMDMDKSSHMDKS****************EGRD*******************************************************
xxxxxxxxxxxxxxxxxxHHHHHHHHHHHHHHHHHHHHHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
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MAKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDELPCQGLGEHAHFSNFGMAFLTLFRVDMDMDKSSHMDKSSHMDKSSHKDTHLHSIEGRDNSSYHTSSLKDNSSLKDKSSKDKSSRKLKTNGRQQSMSDPSSINVNHKNNLDTKI

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Voltage-dependent T-type calcium channel subunit alpha-1H Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death. The isoform alpha-1H gives rise to T-type calcium currents. T-type calcium channels belong to the "low-voltage activated (LVA)" group and are strongly blocked by nickel and mibefradil. A particularity of this type of channels is an opening at quite negative potentials, and a voltage-dependent inactivation. T-type channels serve pacemaking functions in both central neurons and cardiac nodal cells and support calcium signaling in secretory cells and vascular smooth muscle. They may also be involved in the modulation of firing patterns of neurons which is important for information processing as well as in cell growth processes.confidentO95180

Prediction of Gene Ontology Terms ?

GO Term ?Description ?Confidence Level ?Parent GO Terms ?
GO:0008332 [MF]low voltage-gated calcium channel activityprobableGO:0005261, GO:0005262, GO:0003674, GO:0015085, GO:0072509, GO:0022843, GO:0022803, GO:0046873, GO:0005215, GO:0005216, GO:0008324, GO:0022839, GO:0022891, GO:0022890, GO:0022892, GO:0005244, GO:0015075, GO:0022832, GO:0022857, GO:0015267, GO:0022836, GO:0005245, GO:0022838
GO:0070509 [BP]calcium ion importprobableGO:0009987, GO:0070838, GO:0006812, GO:0006811, GO:0006810, GO:0070588, GO:0006816, GO:0051179, GO:0008150, GO:0034220, GO:0044765, GO:0030001, GO:0072511, GO:0051234, GO:0044763, GO:0055085, GO:0044699
GO:0030425 [CC]dendriteprobableGO:0044464, GO:0005623, GO:0005575, GO:0097458, GO:0043005, GO:0042995
GO:0051716 [BP]cellular response to stimulusprobableGO:0008150, GO:0050896, GO:0009987, GO:0044763, GO:0044699
GO:0016021 [CC]integral to membraneprobableGO:0005575, GO:0044425, GO:0016020, GO:0031224
GO:0050877 [BP]neurological system processprobableGO:0032501, GO:0008150, GO:0044699, GO:0044707, GO:0003008
GO:0042391 [BP]regulation of membrane potentialprobableGO:0019725, GO:0050801, GO:0009987, GO:0006873, GO:0048878, GO:0042592, GO:0065007, GO:0044763, GO:0008150, GO:0055082, GO:0065008, GO:0044699
GO:0048471 [CC]perinuclear region of cytoplasmprobableGO:0005737, GO:0044464, GO:0005623, GO:0005622, GO:0005575, GO:0044444, GO:0044424
GO:0042383 [CC]sarcolemmaprobableGO:0016020, GO:0044464, GO:0005623, GO:0005575, GO:0071944, GO:0005886
GO:0043204 [CC]perikaryonprobableGO:0044464, GO:0044297, GO:0005623, GO:0005575, GO:0097458, GO:0043025
GO:0005901 [CC]caveolaprobableGO:0045121, GO:0016020, GO:0044464, GO:0005623, GO:0005575, GO:0071944, GO:0005886, GO:0044425, GO:0044459
GO:0007411 [BP]axon guidanceprobableGO:0032502, GO:0044707, GO:0030030, GO:0030154, GO:0048468, GO:0031175, GO:0009653, GO:0007275, GO:0044699, GO:0000904, GO:0000902, GO:0042330, GO:0048869, GO:0016043, GO:0032989, GO:0071840, GO:0048666, GO:0048667, GO:0032501, GO:0006935, GO:0030182, GO:0009987, GO:0044767, GO:0008150, GO:0007409, GO:0048731, GO:0042221, GO:0022008, GO:0048858, GO:0040011, GO:0048699, GO:0032990, GO:0009605, GO:0050896, GO:0048856, GO:0007399, GO:0048812, GO:0044763
GO:0005634 [CC]nucleusprobableGO:0043231, GO:0044464, GO:0005623, GO:0005622, GO:0005575, GO:0043229, GO:0044424, GO:0043227, GO:0043226
GO:0045956 [BP]positive regulation of calcium ion-dependent exocytosisprobableGO:0045921, GO:0060341, GO:0051046, GO:0051047, GO:0051049, GO:0051050, GO:0060627, GO:0017158, GO:0065007, GO:0048518, GO:0008150, GO:0032879, GO:0017157, GO:0050789, GO:0050794, GO:0048522
GO:0097110 [MF]scaffold protein bindingprobableGO:0003674, GO:0005488, GO:0005515
GO:0060402 [BP]calcium ion transport into cytosolprobableGO:0050801, GO:0051649, GO:0042592, GO:0055074, GO:0044699, GO:0072507, GO:0072503, GO:0065007, GO:0006812, GO:0016482, GO:0019725, GO:0009987, GO:0060401, GO:0006875, GO:0006874, GO:0006811, GO:0006810, GO:0006816, GO:0006873, GO:0044765, GO:0008150, GO:0030003, GO:0055065, GO:0055080, GO:0072511, GO:0055082, GO:0051234, GO:0051179, GO:0051641, GO:0065008, GO:0070838, GO:0046907, GO:0051480, GO:0044763, GO:0007204, GO:0048878, GO:0030001

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!


Spatial Structural Prediction

Structural Models Based on Templates

Template: 4DXW, chain A
Confidence level:confident
Coverage over the Query: 2-45,58-89
View the alignment between query and template
View the model in PyMOL