Psyllid ID: psy6930

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160--
Protein Sequence
MAKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDELPCQGLGEHAHFSNFGMAFLTLFRVDMDMDKSSHMDKSSHMDKSSHKDTHLHSIEGRDNSSYHTSSLKDNSSLKDKSSKDKSSRKLKTNGRQQSMSDPSSINVNHKNNLDTKI
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccEEEccccccccccccccccccHHHHHHHHHHHccccccHHHHHcccccccccccccccccccccccccEEEcccccccccccccccHHHHHHHHHccccccccccccEEEcccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHcHHHcHHHHHHHHHHHHHHHHccEEccEEEEcccccccccccccHHHHHHHHHHHHHEEccccccccccccccHcccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccc
Coil and Loop (DISEMBL)
MAKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFgrlecsdelpcqglgehahfsnfGMAFLTLFRVdmdmdksshmdksshmdksshkdthlhsiegrdnssyhtsslkdnsslkdksskdkssrklktngrqqsmsdpssinvnhknnldtki
Flexible Loop (DISEMBL)
MAKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDELPCQGLGEHAHFSNFGMAFLTLFRVDMDMDKSSHMDKSSHMDKSSHKDTHLHSiegrdnssyhtsslkdnsslkdksskdkssrklktngrqqsmsdpssinvnhknnldtki
Low Complexity Region (SEG)
MAKGIRALLDTVMQALPQVGNlgllffllffifaalgVELFGRLECSDELPCQGLGEHAHFSNFGMAFLTLFRVdmdmdksshmdksshmdksshkdTHLHSIEGRDNSSYHTsslkdnsslkdksskdkssrklkTNGRQQSMSDPSSINVNHKNNLDTKI
Disordered region (IsUnstruct)
****IRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDELPCQGLGEHAHFSNFGMAFLTLFRVD***************************************************************************************
Disordered Region (DISOPRED)
*AKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDELPCQGLGEHAHFSNFGMAFLTLFRVDMDMDKSSHMDKS****************EGRDNSSYHT*************************************************
Disordered Region (DISEMBL)
MAKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDELPCQGLGEHAHFSNFGMAFLTLFRVDMDMDK*******************LHSIEGR******************************************SINVNHKNNLDTKI
Disordered Region (DISPRO)
*AKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDELPCQGLGEHAHFSNFGMAFLTLFRVDMDMDKSSHMDKSSHMDKSSHKDTHLHSIE*RD*****************************************SIN***********
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDELPCQGLGEHAHFSNFGMAFLTLFRVDMDMDKSSHMDKSSHMDKSSHKDTHLHSIEGRDNSSYHTSSLKDNSSLKDKSSKDKSSRKLKTNGRQQSMSDPSSINVNHKNNLDTKI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	162	2.2.26 [Sep-21-2011]
O95180	2353	Voltage-dependent T-type	yes	N/A	0.598	0.041	0.666	1e-24
O88427	2365	Voltage-dependent T-type	no	N/A	0.364	0.024	0.824	3e-24
Q9EQ60	2359	Voltage-dependent T-type	yes	N/A	0.364	0.025	0.824	3e-24
Q9Z0Y8	2201	Voltage-dependent T-type	no	N/A	0.395	0.029	0.783	2e-22
Q9P0X4	2223	Voltage-dependent T-type	no	N/A	0.364	0.026	0.783	2e-22
O43497	2377	Voltage-dependent T-type	no	N/A	0.351	0.023	0.837	4e-22
O54898	2254	Voltage-dependent T-type	no	N/A	0.351	0.025	0.824	2e-21
Q9UI33	1791	Sodium channel protein ty	no	N/A	0.598	0.054	0.342	1e-08
Q15858	1988	Sodium channel protein ty	no	N/A	0.419	0.034	0.383	2e-07
Q62968	1956	Sodium channel protein ty	no	N/A	0.419	0.034	0.397	5e-07

>sp|O95180|CAC1H_HUMAN Voltage-dependent T-type calcium channel subunit alpha-1H OS=Homo sapiens GN=CACNA1H PE=1 SV=4

 Score =  112 bits (280), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 66/99 (66%), Positives = 78/99 (78%), Gaps = 2/99 (2%)

Query: 1    MAKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDELPCQGLGEHAH 60
            MA G+RALLDTV+QALPQVGNLGLLF LLFFI+AALGVELFGRLECS++ PC+GL  HA 
Sbjct: 1731 MATGMRALLDTVVQALPQVGNLGLLFMLLFFIYAALGVELFGRLECSEDNPCEGLSRHAT 1790

Query: 61   FSNFGMAFLTLFRVDMDMDKSSHMDKSSHMDKSSHKDTH 99
            FSNFGMAFLTLFRV    + +  M  +  + + S +D H
Sbjct: 1791 FSNFGMAFLTLFRVSTGDNWNGIMKDT--LRECSREDKH 1827

Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death. The isoform alpha-1H gives rise to T-type calcium currents. T-type calcium channels belong to the "low-voltage activated (LVA)" group and are strongly blocked by nickel and mibefradil. A particularity of this type of channels is an opening at quite negative potentials, and a voltage-dependent inactivation. T-type channels serve pacemaking functions in both central neurons and cardiac nodal cells and support calcium signaling in secretory cells and vascular smooth muscle. They may also be involved in the modulation of firing patterns of neurons which is important for information processing as well as in cell growth processes.
Homo sapiens (taxid: 9606)

>sp|O88427|CAC1H_MOUSE Voltage-dependent T-type calcium channel subunit alpha-1H OS=Mus musculus GN=Cacna1h PE=2 SV=3

 Score =  110 bits (276), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 61/74 (82%), Positives = 68/74 (91%)

Query: 1    MAKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDELPCQGLGEHAH 60
            MA G+RALLDTV+QALPQVGNLGLLF LLFFI+AALGVELFGRLECS++ PC+GL  HA 
Sbjct: 1742 MATGMRALLDTVVQALPQVGNLGLLFMLLFFIYAALGVELFGRLECSEDNPCEGLSRHAT 1801

Query: 61   FSNFGMAFLTLFRV 74
            F+NFGMAFLTLFRV
Sbjct: 1802 FTNFGMAFLTLFRV 1815

Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death. The isoform alpha-1H gives rise to T-type calcium currents. T-type calcium channels belong to the "low-voltage activated (LVA)" group and are strongly blocked by nickel and mibefradil. A particularity of this type of channels is an opening at quite negative potentials, and a voltage-dependent inactivation. T-type channels serve pacemaking functions in both central neurons and cardiac nodal cells and support calcium signaling in secretory cells and vascular smooth muscle. They may also be involved in the modulation of firing patterns of neurons which is important for information processing as well as in cell growth processes.

Mus musculus (taxid: 10090)

>sp|Q9EQ60|CAC1H_RAT Voltage-dependent T-type calcium channel subunit alpha-1H OS=Rattus norvegicus GN=Cacna1h PE=2 SV=2

 Score =  110 bits (276), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 61/74 (82%), Positives = 68/74 (91%)

Query: 1    MAKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDELPCQGLGEHAH 60
            MA G+RALLDTV+QALPQVGNLGLLF LLFFI+AALGVELFGRLECS++ PC+GL  HA 
Sbjct: 1736 MATGMRALLDTVVQALPQVGNLGLLFMLLFFIYAALGVELFGRLECSEDNPCEGLSRHAT 1795

Query: 61   FSNFGMAFLTLFRV 74
            F+NFGMAFLTLFRV
Sbjct: 1796 FTNFGMAFLTLFRV 1809

Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death. The isoform alpha-1H gives rise to T-type calcium currents. T-type calcium channels belong to the "low-voltage activated (LVA)" group and are strongly blocked by nickel and mibefradil. A particularity of this type of channels is an opening at quite negative potentials, and a voltage-dependent inactivation. T-type channels serve pacemaking functions in both central neurons and cardiac nodal cells and support calcium signaling in secretory cells and vascular smooth muscle. They may also be involved in the modulation of firing patterns of neurons which is important for information processing as well as in cell growth processes.

Rattus norvegicus (taxid: 10116)

>sp|Q9Z0Y8|CAC1I_RAT Voltage-dependent T-type calcium channel subunit alpha-1I OS=Rattus norvegicus GN=Cacna1i PE=2 SV=3

 Score =  105 bits (261), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 58/74 (78%), Positives = 66/74 (89%)

Query: 1    MAKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDELPCQGLGEHAH 60
            MA G+RALLDTV+QALPQVGNLGLLF LLFFI+AALGVELFG+L C+DE PC+G+  HA 
Sbjct: 1560 MATGMRALLDTVVQALPQVGNLGLLFMLLFFIYAALGVELFGKLVCNDENPCEGMSRHAT 1619

Query: 61   FSNFGMAFLTLFRV 74
            F NFGMAFLTLF+V
Sbjct: 1620 FENFGMAFLTLFQV 1633

Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death. Isoform alpha-1I gives rise to T-type calcium currents. T-type calcium channels belong to the "low-voltage activated (LVA)" group and are strongly blocked by nickel and mibefradil. A particularity of this type of channels is an opening at quite negative potentials, and a voltage-dependent inactivation. T-type channels serve pacemaking functions in both central neurons and cardiac nodal cells and support calcium signaling in secretory cells and vascular smooth muscle. They may also be involved in the modulation of firing patterns of neurons which is important for information processing as well as in cell growth processes. Gates in voltage ranges similar to, but higher than alpha 1G or alpha 1H.

Rattus norvegicus (taxid: 10116)

>sp|Q9P0X4|CAC1I_HUMAN Voltage-dependent T-type calcium channel subunit alpha-1I OS=Homo sapiens GN=CACNA1I PE=1 SV=1

 Score =  104 bits (260), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 58/74 (78%), Positives = 66/74 (89%)

Query: 1    MAKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDELPCQGLGEHAH 60
            MA G+RALLDTV+QALPQVGNLGLLF LLFFI+AALGVELFG+L C+DE PC+G+  HA 
Sbjct: 1601 MATGMRALLDTVVQALPQVGNLGLLFMLLFFIYAALGVELFGKLVCNDENPCEGMSRHAT 1660

Query: 61   FSNFGMAFLTLFRV 74
            F NFGMAFLTLF+V
Sbjct: 1661 FENFGMAFLTLFQV 1674

Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death. Isoform alpha-1I gives rise to T-type calcium currents. T-type calcium channels belong to the "low-voltage activated (LVA)" group and are strongly blocked by nickel and mibefradil. A particularity of this type of channels is an opening at quite negative potentials, and a voltage-dependent inactivation. T-type channels serve pacemaking functions in both central neurons and cardiac nodal cells and support calcium signaling in secretory cells and vascular smooth muscle. They may also be involved in the modulation of firing patterns of neurons which is important for information processing as well as in cell growth processes. Gates in voltage ranges similar to, but higher than alpha 1G or alpha 1H.

Homo sapiens (taxid: 9606)

>sp|O43497|CAC1G_HUMAN Voltage-dependent T-type calcium channel subunit alpha-1G OS=Homo sapiens GN=CACNA1G PE=2 SV=3

 Score =  103 bits (257), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 62/74 (83%), Positives = 65/74 (87%)

Query: 1    MAKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDELPCQGLGEHAH 60
            MA G+RALLDTVMQALPQVGNLGLLF LLFFIFAALGVELFG LEC +  PC+GLG HA 
Sbjct: 1725 MAVGMRALLDTVMQALPQVGNLGLLFMLLFFIFAALGVELFGDLECDETHPCEGLGRHAT 1784

Query: 61   FSNFGMAFLTLFRV 74
            F NFGMAFLTLFRV
Sbjct: 1785 FRNFGMAFLTLFRV 1798

Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death. The isoform alpha-1G gives rise to T-type calcium currents. T-type calcium channels belong to the "low-voltage activated (LVA)" group and are strongly blocked by mibefradil. A particularity of this type of channels is an opening at quite negative potentials and a voltage-dependent inactivation. T-type channels serve pacemaking functions in both central neurons and cardiac nodal cells and support calcium signaling in secretory cells and vascular smooth muscle. They may also be involved in the modulation of firing patterns of neurons which is important for information processing as well as in cell growth processes.

Homo sapiens (taxid: 9606)

>sp|O54898|CAC1G_RAT Voltage-dependent T-type calcium channel subunit alpha-1G OS=Rattus norvegicus GN=Cacna1g PE=2 SV=2

 Score =  101 bits (251), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 61/74 (82%), Positives = 64/74 (86%)

Query: 1    MAKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDELPCQGLGEHAH 60
            MA G+RALL TVMQALPQVGNLGLLF LLFFIFAALGVELFG LEC +  PC+GLG HA 
Sbjct: 1693 MAVGMRALLHTVMQALPQVGNLGLLFMLLFFIFAALGVELFGDLECDETHPCEGLGRHAT 1752

Query: 61   FSNFGMAFLTLFRV 74
            F NFGMAFLTLFRV
Sbjct: 1753 FRNFGMAFLTLFRV 1766

Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death. The isoform alpha-1G gives rise to T-type calcium currents. T-type calcium channels belong to the "low-voltage activated (LVA)" group and are strongly blocked by nickel and mibefradil. A particularity of this type of channels is an opening at quite negative potentials and a voltage-dependent inactivation. T-type channels serve pacemaking functions in both central neurons and cardiac nodal cells and support calcium signaling in secretory cells and vascular smooth muscle. They may also be involved in the modulation of firing patterns of neurons which is important for information processing as well as in cell growth processes.

Rattus norvegicus (taxid: 10116)

>sp|Q9UI33|SCNBA_HUMAN Sodium channel protein type 11 subunit alpha OS=Homo sapiens GN=SCN11A PE=1 SV=2

 Score = 59.3 bits (142), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/105 (34%), Positives = 55/105 (52%), Gaps = 8/105 (7%)

Query: 2    AKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDELPCQGLGEHAHF 61
            A+GIR LL  +M +LP + N+GLL FL+ FI+A LG+  F ++      P  G+ +  +F
Sbjct: 1480 ARGIRTLLFALMMSLPSLFNIGLLLFLIMFIYAILGMNWFSKVN-----PESGIDDIFNF 1534

Query: 62   SNFGMAFLTLFRVDMDMDKS---SHMDKSSHMDKSSHKDTHLHSI 103
              F  + L LF++          S M +S     SS ++ HL  I
Sbjct: 1535 KTFASSMLCLFQISTSAGWDSLLSPMLRSKESCNSSSENCHLPGI 1579

This protein mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which sodium ions may pass in accordance with their electrochemical gradient. It is a tetrodotoxin-resistant sodium channel isoform. Also involved, with the contribution of the receptor tyrosine kinase NTRK2, in rapid BDNF-evoked neuronal depolarization.

Homo sapiens (taxid: 9606)

>sp|Q15858|SCN9A_HUMAN Sodium channel protein type 9 subunit alpha OS=Homo sapiens GN=SCN9A PE=1 SV=3

 Score = 55.5 bits (132), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 5/73 (6%)

Query: 2    AKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDELPCQGLGEHAHF 61
            AKGIR LL  +M +LP + N+GLL FL+ FI+A  G+  F  ++  D     G+ +  +F
Sbjct: 1627 AKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYVKKED-----GINDMFNF 1681

Query: 62   SNFGMAFLTLFRV 74
              FG + + LF++
Sbjct: 1682 ETFGNSMICLFQI 1694

Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient. It is a tetrodotoxin-sensitive Na(+) channel isoform. Plays a role in pain mechanisms, especially in the development of inflammatory pain.

Homo sapiens (taxid: 9606)

>sp|Q62968|SCNAA_RAT Sodium channel protein type 10 subunit alpha OS=Rattus norvegicus GN=Scn10a PE=1 SV=1

 Score = 53.9 bits (128), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 5/73 (6%)

Query: 2    AKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDELPCQGLGEHAHF 61
            AKGIR LL  +M +LP + N+GLL FL+ FI++  G+  F  +   DE    G+ +  +F
Sbjct: 1591 AKGIRTLLFALMMSLPALFNIGLLLFLVMFIYSIFGMASFANV--VDE---AGIDDMFNF 1645

Query: 62   SNFGMAFLTLFRV 74
              FG + L LF++
Sbjct: 1646 KTFGNSMLCLFQI 1658

This protein mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which sodium ions may pass in accordance with their electrochemical gradient. It is a tetrodotoxin-resistant sodium channel isoform. Its electrophysiological properties vary depending on the type of the associated beta regulatory auxiliary subunits (in vitro). Plays a role in neuropathic pain mechanisms.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	162
242017362	2449	voltage- gated calcium channel, putative	0.358	0.023	0.972	7e-28
198456108	1709	GA25721 [Drosophila pseudoobscura pseudo	0.456	0.043	0.972	9e-28
345485650	2158	PREDICTED: voltage-dependent T-type calc	0.358	0.026	0.986	9e-28
357601659	2237	putative voltage- gated calcium channel	0.358	0.025	0.972	3e-27
157114427	1219	voltage- gated calcium channel alpha sub	0.456	0.060	0.959	3e-27
312373886	3164	hypothetical protein AND_16850 [Anophele	0.456	0.023	0.959	3e-27
307213880	2606	Voltage-dependent T-type calcium channel	0.358	0.022	0.986	3e-27
307166119	2356	Voltage-dependent T-type calcium channel	0.358	0.024	0.972	5e-27
195457036	2856	GK17712 [Drosophila willistoni] gi|19417	0.456	0.025	0.972	6e-27
380028982	2455	PREDICTED: voltage-dependent T-type calc	0.358	0.023	0.972	6e-27

>gi|242017362|ref|XP_002429158.1| voltage- gated calcium channel, putative [Pediculus humanus corporis] gi|212514036|gb|EEB16420.1| voltage- gated calcium channel, putative [Pediculus humanus corporis]

 Score =  128 bits (322), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 72/74 (97%), Positives = 74/74 (100%)

Query: 1    MAKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDELPCQGLGEHAH 60
            MAKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDE+PCQGLGEHAH
Sbjct: 1731 MAKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDEMPCQGLGEHAH 1790

Query: 61   FSNFGMAFLTLFRV 74
            F+NFGMAFLTLFRV
Sbjct: 1791 FANFGMAFLTLFRV 1804

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198456108|ref|XP_002136376.1| GA25721 [Drosophila pseudoobscura pseudoobscura] gi|198142746|gb|EDY71465.1| GA25721 [Drosophila pseudoobscura pseudoobscura]

 Score =  128 bits (321), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 72/74 (97%), Positives = 74/74 (100%)

Query: 1    MAKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDELPCQGLGEHAH 60
            MAKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDE+PCQGLGEHAH
Sbjct: 1082 MAKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDEIPCQGLGEHAH 1141

Query: 61   FSNFGMAFLTLFRV 74
            F+NFGMAFLTLFRV
Sbjct: 1142 FANFGMAFLTLFRV 1155

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345485650|ref|XP_001604402.2| PREDICTED: voltage-dependent T-type calcium channel subunit alpha-1H-like [Nasonia vitripennis]

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 73/74 (98%), Positives = 74/74 (100%)

Query: 1    MAKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDELPCQGLGEHAH 60
            MAKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDE+PCQGLGEHAH
Sbjct: 1900 MAKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDEMPCQGLGEHAH 1959

Query: 61   FSNFGMAFLTLFRV 74
            FSNFGMAFLTLFRV
Sbjct: 1960 FSNFGMAFLTLFRV 1973

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357601659|gb|EHJ63110.1| putative voltage- gated calcium channel alpha subunit [Danaus plexippus]

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 72/74 (97%), Positives = 74/74 (100%)

Query: 1    MAKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDELPCQGLGEHAH 60
            MAKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDE+PCQGLGEHAH
Sbjct: 1850 MAKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDEIPCQGLGEHAH 1909

Query: 61   FSNFGMAFLTLFRV 74
            F+NFGMAFLTLFRV
Sbjct: 1910 FANFGMAFLTLFRV 1923

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157114427|ref|XP_001652266.1| voltage- gated calcium channel alpha subunit cav3.3 (voltage-dependent t-type calcium channel [Aedes aegypti] gi|108877310|gb|EAT41535.1| AAEL006849-PA, partial [Aedes aegypti]

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 71/74 (95%), Positives = 74/74 (100%)

Query: 1    MAKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDELPCQGLGEHAH 60
            MAKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECS+E+PCQGLGEHAH
Sbjct: 1014 MAKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSEEVPCQGLGEHAH 1073

Query: 61   FSNFGMAFLTLFRV 74
            F+NFGMAFLTLFRV
Sbjct: 1074 FANFGMAFLTLFRV 1087

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312373886|gb|EFR21555.1| hypothetical protein AND_16850 [Anopheles darlingi]

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 71/74 (95%), Positives = 74/74 (100%)

Query: 1    MAKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDELPCQGLGEHAH 60
            MAKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECS+E+PCQGLGEHAH
Sbjct: 1882 MAKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSEEVPCQGLGEHAH 1941

Query: 61   FSNFGMAFLTLFRV 74
            F+NFGMAFLTLFRV
Sbjct: 1942 FANFGMAFLTLFRV 1955

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307213880|gb|EFN89141.1| Voltage-dependent T-type calcium channel subunit alpha-1H [Harpegnathos saltator]

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 73/74 (98%), Positives = 74/74 (100%)

Query: 1    MAKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDELPCQGLGEHAH 60
            MAKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDE+PCQGLGEHAH
Sbjct: 1919 MAKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDEMPCQGLGEHAH 1978

Query: 61   FSNFGMAFLTLFRV 74
            FSNFGMAFLTLFRV
Sbjct: 1979 FSNFGMAFLTLFRV 1992

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307166119|gb|EFN60368.1| Voltage-dependent T-type calcium channel subunit alpha-1H [Camponotus floridanus]

 Score =  125 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 72/74 (97%), Positives = 74/74 (100%)

Query: 1    MAKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDELPCQGLGEHAH 60
            MAKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLEC+DE+PCQGLGEHAH
Sbjct: 1816 MAKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECNDEMPCQGLGEHAH 1875

Query: 61   FSNFGMAFLTLFRV 74
            FSNFGMAFLTLFRV
Sbjct: 1876 FSNFGMAFLTLFRV 1889

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195457036|ref|XP_002075397.1| GK17712 [Drosophila willistoni] gi|194171482|gb|EDW86383.1| GK17712 [Drosophila willistoni]

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 72/74 (97%), Positives = 74/74 (100%)

Query: 1    MAKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDELPCQGLGEHAH 60
            MAKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDE+PCQGLGEHAH
Sbjct: 2252 MAKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDEIPCQGLGEHAH 2311

Query: 61   FSNFGMAFLTLFRV 74
            F+NFGMAFLTLFRV
Sbjct: 2312 FANFGMAFLTLFRV 2325

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380028982|ref|XP_003698162.1| PREDICTED: voltage-dependent T-type calcium channel subunit alpha-1G-like [Apis florea]

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 72/74 (97%), Positives = 74/74 (100%)

Query: 1    MAKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDELPCQGLGEHAH 60
            MAKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSD++PCQGLGEHAH
Sbjct: 1916 MAKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDDMPCQGLGEHAH 1975

Query: 61   FSNFGMAFLTLFRV 74
            FSNFGMAFLTLFRV
Sbjct: 1976 FSNFGMAFLTLFRV 1989

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	162
FB|FBgn0264386	3205	Ca-alpha1T "Ca[2+]-channel pro	0.456	0.023	0.743	2.2e-22
UNIPROTKB|H3BPX6	897	CACNA1H "Voltage-dependent T-t	0.456	0.082	0.648	1.3e-19
WB|WBGene00000367	1885	cca-1 [Caenorhabditis elegans	0.456	0.039	0.648	1.8e-19
UNIPROTKB|H3BMW6	1078	CACNA1H "Voltage-dependent T-t	0.456	0.068	0.648	2.2e-19
UNIPROTKB|H3BUA8	1084	CACNA1H "Voltage-dependent T-t	0.456	0.068	0.648	2.2e-19
UNIPROTKB|H3BNT0	1100	CACNA1H "Voltage-dependent T-t	0.456	0.067	0.648	2.3e-19
UNIPROTKB|O95180	2353	CACNA1H "Voltage-dependent T-t	0.456	0.031	0.648	1.5e-18
UNIPROTKB|F1Q463	2255	CACNA1H "Uncharacterized prote	0.456	0.032	0.648	3.3e-18
UNIPROTKB|F1MQV2	2258	CACNA1H "Uncharacterized prote	0.456	0.032	0.648	3.3e-18
UNIPROTKB|F1PQE5	2401	CACNA1H "Uncharacterized prote	0.456	0.030	0.648	3.5e-18

FB|FBgn0264386 Ca-alpha1T "Ca[2+]-channel protein alpha[[1]] subunit T" [Drosophila melanogaster (taxid:7227)]

 Score = 278 (102.9 bits), Expect = 2.2e-22, P = 2.2e-22
 Identities = 55/74 (74%), Positives = 57/74 (77%)

Query:     1 MAKGIRALLDTVMQALPQVGNXXXXXXXXXXXXXXXXVELFGRLECSDELPCQGLGEHAH 60
             MA GIRALLDTVMQALPQVGN                VELFGRLECSDE+PCQGLGEHAH
Sbjct:  2596 MANGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDEIPCQGLGEHAH 2655

Query:    61 FSNFGMAFLTLFRV 74
             F+NFGMAFLTLFRV
Sbjct:  2656 FANFGMAFLTLFRV 2669

GO:0008332 "low voltage-gated calcium channel activity" evidence=ISS;IMP;NAS

GO:0005891 "voltage-gated calcium channel complex" evidence=IEA;NAS

GO:0005262 "calcium channel activity" evidence=NAS

GO:0070588 "calcium ion transmembrane transport" evidence=IEA

UNIPROTKB|H3BPX6 CACNA1H "Voltage-dependent T-type calcium channel subunit alpha-1H" [Homo sapiens (taxid:9606)]

 Score = 237 (88.5 bits), Expect = 1.3e-19, Sum P(2) = 1.3e-19
 Identities = 48/74 (64%), Positives = 53/74 (71%)

Query:     1 MAKGIRALLDTVMQALPQVGNXXXXXXXXXXXXXXXXVELFGRLECSDELPCQGLGEHAH 60
             MA G+RALLDTV+QALPQVGN                VELFGRLECS++ PC+GL  HA 
Sbjct:   275 MATGMRALLDTVVQALPQVGNLGLLFMLLFFIYAALGVELFGRLECSEDNPCEGLSRHAT 334

Query:    61 FSNFGMAFLTLFRV 74
             FSNFGMAFLTLFRV
Sbjct:   335 FSNFGMAFLTLFRV 348

GO:0005216 "ion channel activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

WB|WBGene00000367 cca-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 248 (92.4 bits), Expect = 1.8e-19, P = 1.8e-19
 Identities = 48/74 (64%), Positives = 54/74 (72%)

Query:     1 MAKGIRALLDTVMQALPQVGNXXXXXXXXXXXXXXXXVELFGRLECSDELPCQGLGEHAH 60
             MAKGIR+LLDTV +ALPQVGN                VELFG+LECS++ PC GLGEHAH
Sbjct:  1602 MAKGIRSLLDTVGEALPQVGNLGSLFFLLFFIFAALGVELFGKLECSEDHPCDGLGEHAH 1661

Query:    61 FSNFGMAFLTLFRV 74
             F NFGMAFLTLFR+
Sbjct:  1662 FKNFGMAFLTLFRI 1675

GO:0005245 "voltage-gated calcium channel activity" evidence=IEA

GO:0005891 "voltage-gated calcium channel complex" evidence=IEA

GO:0070588 "calcium ion transmembrane transport" evidence=IEA

GO:0005216 "ion channel activity" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0043051 "regulation of pharyngeal pumping" evidence=IGI;IMP

GO:0045760 "positive regulation of action potential" evidence=IMP

GO:0051899 "membrane depolarization" evidence=IMP

GO:0008332 "low voltage-gated calcium channel activity" evidence=ISS

UNIPROTKB|H3BMW6 CACNA1H "Voltage-dependent T-type calcium channel subunit alpha-1H" [Homo sapiens (taxid:9606)]

 Score = 237 (88.5 bits), Expect = 2.2e-19, Sum P(2) = 2.2e-19
 Identities = 48/74 (64%), Positives = 53/74 (71%)

Query:     1 MAKGIRALLDTVMQALPQVGNXXXXXXXXXXXXXXXXVELFGRLECSDELPCQGLGEHAH 60
             MA G+RALLDTV+QALPQVGN                VELFGRLECS++ PC+GL  HA 
Sbjct:   467 MATGMRALLDTVVQALPQVGNLGLLFMLLFFIYAALGVELFGRLECSEDNPCEGLSRHAT 526

Query:    61 FSNFGMAFLTLFRV 74
             FSNFGMAFLTLFRV
Sbjct:   527 FSNFGMAFLTLFRV 540

GO:0005216 "ion channel activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|H3BUA8 CACNA1H "Voltage-dependent T-type calcium channel subunit alpha-1H" [Homo sapiens (taxid:9606)]

 Score = 237 (88.5 bits), Expect = 2.2e-19, Sum P(2) = 2.2e-19
 Identities = 48/74 (64%), Positives = 53/74 (71%)

Query:     1 MAKGIRALLDTVMQALPQVGNXXXXXXXXXXXXXXXXVELFGRLECSDELPCQGLGEHAH 60
             MA G+RALLDTV+QALPQVGN                VELFGRLECS++ PC+GL  HA 
Sbjct:   473 MATGMRALLDTVVQALPQVGNLGLLFMLLFFIYAALGVELFGRLECSEDNPCEGLSRHAT 532

Query:    61 FSNFGMAFLTLFRV 74
             FSNFGMAFLTLFRV
Sbjct:   533 FSNFGMAFLTLFRV 546

GO:0005216 "ion channel activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|H3BNT0 CACNA1H "Voltage-dependent T-type calcium channel subunit alpha-1H" [Homo sapiens (taxid:9606)]

 Score = 237 (88.5 bits), Expect = 2.3e-19, Sum P(2) = 2.3e-19
 Identities = 48/74 (64%), Positives = 53/74 (71%)

Query:     1 MAKGIRALLDTVMQALPQVGNXXXXXXXXXXXXXXXXVELFGRLECSDELPCQGLGEHAH 60
             MA G+RALLDTV+QALPQVGN                VELFGRLECS++ PC+GL  HA 
Sbjct:   478 MATGMRALLDTVVQALPQVGNLGLLFMLLFFIYAALGVELFGRLECSEDNPCEGLSRHAT 537

Query:    61 FSNFGMAFLTLFRV 74
             FSNFGMAFLTLFRV
Sbjct:   538 FSNFGMAFLTLFRV 551

GO:0005216 "ion channel activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|O95180 CACNA1H "Voltage-dependent T-type calcium channel subunit alpha-1H" [Homo sapiens (taxid:9606)]

 Score = 237 (88.5 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
 Identities = 48/74 (64%), Positives = 53/74 (71%)

Query:     1 MAKGIRALLDTVMQALPQVGNXXXXXXXXXXXXXXXXVELFGRLECSDELPCQGLGEHAH 60
             MA G+RALLDTV+QALPQVGN                VELFGRLECS++ PC+GL  HA 
Sbjct:  1731 MATGMRALLDTVVQALPQVGNLGLLFMLLFFIYAALGVELFGRLECSEDNPCEGLSRHAT 1790

Query:    61 FSNFGMAFLTLFRV 74
             FSNFGMAFLTLFRV
Sbjct:  1791 FSNFGMAFLTLFRV 1804

GO:0005891 "voltage-gated calcium channel complex" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005901 "caveola" evidence=IEA

GO:0042383 "sarcolemma" evidence=IEA

GO:2000344 "positive regulation of acrosome reaction" evidence=IMP

GO:0032870 "cellular response to hormone stimulus" evidence=IEP

GO:0035865 "cellular response to potassium ion" evidence=IEP

GO:0032342 "aldosterone biosynthetic process" evidence=IMP

GO:0034651 "cortisol biosynthetic process" evidence=IMP

GO:0006810 "transport" evidence=TAS

GO:0006936 "muscle contraction" evidence=TAS

GO:0007517 "muscle organ development" evidence=NAS

GO:0007520 "myoblast fusion" evidence=TAS

GO:0008016 "regulation of heart contraction" evidence=TAS

GO:0007411 "axon guidance" evidence=TAS

GO:0097110 "scaffold protein binding" evidence=IPI

GO:0008332 "low voltage-gated calcium channel activity" evidence=IDA

GO:0070509 "calcium ion import" evidence=IDA

GO:0016021 "integral to membrane" evidence=IDA

GO:0042391 "regulation of membrane potential" evidence=IDA

UNIPROTKB|F1Q463 CACNA1H "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 237 (88.5 bits), Expect = 3.3e-18, P = 3.3e-18
 Identities = 48/74 (64%), Positives = 53/74 (71%)

Query:     1 MAKGIRALLDTVMQALPQVGNXXXXXXXXXXXXXXXXVELFGRLECSDELPCQGLGEHAH 60
             MA G+RALLDTV+QALPQVGN                VELFGRLECS++ PC+GL  HA 
Sbjct:  1640 MATGMRALLDTVVQALPQVGNLGLLFMLLFFIYAALGVELFGRLECSEDNPCEGLSRHAT 1699

Query:    61 FSNFGMAFLTLFRV 74
             FSNFGMAFLTLFRV
Sbjct:  1700 FSNFGMAFLTLFRV 1713

GO:0005891 "voltage-gated calcium channel complex" evidence=IEA

GO:0005245 "voltage-gated calcium channel activity" evidence=IEA

UNIPROTKB|F1MQV2 CACNA1H "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 237 (88.5 bits), Expect = 3.3e-18, P = 3.3e-18
 Identities = 48/74 (64%), Positives = 53/74 (71%)

Query:     1 MAKGIRALLDTVMQALPQVGNXXXXXXXXXXXXXXXXVELFGRLECSDELPCQGLGEHAH 60
             MA G+RALLDTV+QALPQVGN                VELFGRLECS++ PC+GL  HA 
Sbjct:  1643 MATGMRALLDTVVQALPQVGNLGLLFMLLFFIYAALGVELFGRLECSEDNPCEGLSRHAT 1702

Query:    61 FSNFGMAFLTLFRV 74
             FSNFGMAFLTLFRV
Sbjct:  1703 FSNFGMAFLTLFRV 1716

GO:2000344 "positive regulation of acrosome reaction" evidence=IEA

GO:0097110 "scaffold protein binding" evidence=IEA

GO:0070509 "calcium ion import" evidence=IEA

GO:0042391 "regulation of membrane potential" evidence=IEA

GO:0042383 "sarcolemma" evidence=IEA

GO:0035865 "cellular response to potassium ion" evidence=IEA

GO:0034651 "cortisol biosynthetic process" evidence=IEA

GO:0032870 "cellular response to hormone stimulus" evidence=IEA

GO:0032342 "aldosterone biosynthetic process" evidence=IEA

GO:0008332 "low voltage-gated calcium channel activity" evidence=IEA

GO:0005901 "caveola" evidence=IEA

GO:0005891 "voltage-gated calcium channel complex" evidence=IEA

UNIPROTKB|F1PQE5 CACNA1H "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 237 (88.5 bits), Expect = 3.5e-18, P = 3.5e-18
 Identities = 48/74 (64%), Positives = 53/74 (71%)

Query:     1 MAKGIRALLDTVMQALPQVGNXXXXXXXXXXXXXXXXVELFGRLECSDELPCQGLGEHAH 60
             MA G+RALLDTV+QALPQVGN                VELFGRLECS++ PC+GL  HA 
Sbjct:  1788 MATGMRALLDTVVQALPQVGNLGLLFMLLFFIYAALGVELFGRLECSEDNPCEGLSRHAT 1847

Query:    61 FSNFGMAFLTLFRV 74
             FSNFGMAFLTLFRV
Sbjct:  1848 FSNFGMAFLTLFRV 1861

GO:0005245 "voltage-gated calcium channel activity" evidence=IEA

GO:0005891 "voltage-gated calcium channel complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O95180	CAC1H_HUMAN	No assigned EC number	0.6666	0.5987	0.0412	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	162
pfam00520	194	pfam00520, Ion_trans, Ion transport protein	3e-14
pfam08016	423	pfam08016, PKD_channel, Polycystin cation channel	0.004

>gnl|CDD|215968 pfam00520, Ion_trans, Ion transport protein

 Score = 66.5 bits (163), Expect = 3e-14
 Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 1/75 (1%)

Query: 1   MAKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDELPCQG-LGEHA 59
              G+R LL ++ ++L  + NL LL  LL FIFA +GV+LFG          +  +  ++
Sbjct: 76  RFPGLRTLLQSLGRSLKSLLNLLLLLLLLLFIFAIIGVQLFGGELDKCCDKNENPINGNS 135

Query: 60  HFSNFGMAFLTLFRV 74
           +F ++G A L LFR 
Sbjct: 136 NFDSYGEALLWLFRT 150

This family contains Sodium, Potassium, Calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not the Pfam family due to it lacking the first four helices. Length = 194

>gnl|CDD|219699 pfam08016, PKD_channel, Polycystin cation channel

 Score = 36.2 bits (84), Expect = 0.004
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 13/63 (20%)

Query: 11  TVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDELPCQGLGEHAHFSNFGMAFLT 70
           T+ +AL ++    ++F +LF  +A LG  LFG              +  +FSNF  + LT
Sbjct: 325 TLSRALKELLGFAVMFVILFLAYAQLGYLLFGS-------------QVDNFSNFVKSILT 371

Query: 71  LFR 73
           LFR
Sbjct: 372 LFR 374

This family contains the cation channel region of PKD1 and PKD2 proteins. Length = 423

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	162
KOG2302|consensus	1956		99.8
KOG2301|consensus	1592		99.65
KOG2302|consensus	1956		99.63
KOG2301|consensus	1592		99.52
PF00520	200	Ion_trans: Ion transport protein calcium channel s	98.72
PLN03223	1634	Polycystin cation channel protein; Provisional	97.95
PF08016	425	PKD_channel: Polycystin cation channel; InterPro:	96.7
KOG3599|consensus	798		95.84
TIGR00870	743	trp transient-receptor-potential calcium channel p	83.27

>KOG2302|consensus

Probab=99.80  E-value=1.7e-20  Score=178.98  Aligned_cols=99  Identities=64%  Similarity=1.069  Sum_probs=95.5

Q ss_pred             CchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcCCCCCCCCcccHHHHHHHHHHHhhcCCH
Q psy6930           1 MAKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDELPCQGLGEHAHFSNFGMAFLTLFRVDMDMDK   80 (162)
Q Consensus         1 ~~~gLr~lv~tl~~Slp~l~nv~lLllL~~fIFAIlGmqLF~~~~c~~~~~C~~i~~~~NFdnf~~AmlTLF~i~T~e~W   80 (162)
                      |+-|||.++.|+++++|+++|+.+|.+++|||||.+|++|||+..|.+++||.++.++..|.|||.||+|||+++|||||
T Consensus      1555 matgmralldtvvqalpqvgnlgllfmllffiyaalgvelfg~lec~e~npceglsrhatf~nfgmafltlfrvstgdnw 1634 (1956)
T KOG2302|consen 1555 MATGMRALLDTVVQALPQVGNLGLLFMLLFFIYAALGVELFGKLECNEENPCEGLSRHATFENFGMAFLTLFRVSTGDNW 1634 (1956)
T ss_pred             HHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHhcccccCCCCCccccccccchhhhchHhhhheeeccCCcc
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhccCCCCCCCCCCccC
Q psy6930          81 SSHMDKSSHMDKSSHKDTHLHS  102 (162)
Q Consensus        81 ~~Im~d~~~~~~~~~~~~~~~s  102 (162)
                      +.||.|  .+++|++++ +|.+
T Consensus      1635 ngimkd--tlrdc~~e~-~cls 1653 (1956)
T KOG2302|consen 1635 NGIMKD--TLRDCTHEE-SCLS 1653 (1956)
T ss_pred             cchhhh--hHhhcccch-hhhh
Confidence            999999  999999987 7777

>KOG2301|consensus

Probab=99.65  E-value=1.7e-16  Score=158.77  Aligned_cols=102  Identities=32%  Similarity=0.487  Sum_probs=88.3

Q ss_pred             chhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcCCCCCCCCcccHHHHHHHHHHHhhcCCHH
Q psy6930           2 AKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDELPCQGLGEHAHFSNFGMAFLTLFRVDMDMDKS   81 (162)
Q Consensus         2 ~~gLr~lv~tl~~Slp~l~nv~lLllL~~fIFAIlGmqLF~~~~c~~~~~C~~i~~~~NFdnf~~AmlTLF~i~T~e~W~   81 (162)
                      .+++|.|+.|++.|+|++.++++++++++|||||+|||+|+.++-+      +++++.||++|++|+++||+++|+|+|.
T Consensus      1270 ~~~ir~LL~t~~~Sl~al~~i~lLl~ll~fiYAi~Gmq~Fg~Vkl~------~i~~~~NF~tf~~a~i~LFr~~Tge~W~ 1343 (1592)
T KOG2301|consen 1270 AKTIRTLLLTLMMSLPALFFIILLLFLLFFIYAIIGMQLFGYVKLG------GINDHNNFRTFPNSMVVLFRCATGEGWN 1343 (1592)
T ss_pred             cchhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhheecc------ccCCCcccccchhheeeeeehhhhhhHH
Confidence            4689999999999999999999999999999999999999986542      6788999999999999999999999999


Q ss_pred             HHHHhhccCC-CCCCCCCCccCCCCCCCCccc
Q psy6930          82 SHMDKSSHMD-KSSHKDTHLHSIEGRDNSSYH  112 (162)
Q Consensus        82 ~Im~d~~~~~-~~~~~~~~~~s~~~~~~~~~~  112 (162)
                      ++|.+|+.-. .|++.....  .+ ++.|+++
T Consensus      1344 ~im~~~l~s~p~Cdp~~~~~--~~-dCGn~~~ 1372 (1592)
T KOG2301|consen 1344 DIMDDCLNSKPFCDPDDGNN--GT-DCGNPTV 1372 (1592)
T ss_pred             HHHHHHhcCCCCCCCCCCCc--cc-ccCCCCc
Confidence            9999998765 588866553  11 5665554

>KOG2302|consensus

Probab=99.63  E-value=5.4e-16  Score=148.60  Aligned_cols=104  Identities=24%  Similarity=0.465  Sum_probs=89.7

Q ss_pred             chhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhc-c-cccCCCC--------CcCC-----CCCCCCcccHHH
Q psy6930           2 AKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFG-R-LECSDEL--------PCQG-----LGEHAHFSNFGM   66 (162)
Q Consensus         2 ~~gLr~lv~tl~~Slp~l~nv~lLllL~~fIFAIlGmqLF~-~-~~c~~~~--------~C~~-----i~~~~NFdnf~~   66 (162)
                      +||+|.|+.|+++|+|+|+|++++++.+++||+|+|+|||+ + ++|...+        +|..     +.+.+||+|.|.
T Consensus      1243 a~glklVveTL~sSLkpIgnIvliccaffiiFgilgvqLFkgkfy~c~g~dtrnitnKSdc~aa~yRwvrhkyNfdnlgq 1322 (1956)
T KOG2302|consen 1243 APGLKLVVETLISSLKPIGNIVLICCAFFIIFGILGVQLFKGKFYHCLGVDTRNITNKSDCMAAPYRWVRHKYNFDNLGQ 1322 (1956)
T ss_pred             cccHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHhcccceeccccccccccchhhhcccchhhhhhhcccchHHH
Confidence            68999999999999999999999999999999999999996 5 6887542        4554     346899999999


Q ss_pred             HHHHHHHHhhcCCHHHHHHhhccCCCCCCCCCCccCCCCCCCCccc
Q psy6930          67 AFLTLFRVDMDMDKSSHMDKSSHMDKSSHKDTHLHSIEGRDNSSYH  112 (162)
Q Consensus        67 AmlTLF~i~T~e~W~~Im~d~~~~~~~~~~~~~~~s~~~~~~~~~~  112 (162)
                      |+++||.++|.|+|..||||  +.+.+..     +-+|..+.||+-
T Consensus      1323 almSLFvLaSkDgWv~ImyD--gldavav-----dqqPI~nhnpwm 1361 (1956)
T KOG2302|consen 1323 ALMSLFVLASKDGWVNIMYD--GLDAVAV-----DQQPILNHNPWM 1361 (1956)
T ss_pred             HHHHHHHHhcccchhhhhcc--chhhcee-----eeeccccCCcHH
Confidence            99999999999999999999  6665433     226899999975

>KOG2301|consensus

Probab=99.52  E-value=3.4e-14  Score=142.43  Aligned_cols=104  Identities=26%  Similarity=0.438  Sum_probs=85.2

Q ss_pred             chhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhc-c-cccCCCC-----CcCC------------------CC
Q psy6930           2 AKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFG-R-LECSDEL-----PCQG------------------LG   56 (162)
Q Consensus         2 ~~gLr~lv~tl~~Slp~l~nv~lLllL~~fIFAIlGmqLF~-~-~~c~~~~-----~C~~------------------i~   56 (162)
                      +|+||.++.+++.++|.|+|++++++++++|||++|+|||+ + ++|.|++     +|.+                  .+
T Consensus       949 ~~~mr~Vv~~l~~a~~~I~nv~lV~li~~fiFai~gv~lF~Gkf~~C~d~~~~~~~~~~~~y~~~~~~~~~~~~~~~w~n 1028 (1592)
T KOG2301|consen  949 FPGMRVVVLALFGGLPEIFNVLLVCLIFWFIFAIMGVQLFAGKFYACNDPTVGSRLTRTEVYNKYECESLPRAPRRWWNN 1028 (1592)
T ss_pred             ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCceeccCCCcchhhhhhhhhccCchhhhhhccceEEec
Confidence            58899999999999999999999999999999999999996 4 7898763     2332                  25


Q ss_pred             CCCCcccHHHHHHHHHHHhhcCCHHHHHHhhccCCCCCCCCCCccCCCCCCCCccc
Q psy6930          57 EHAHFSNFGMAFLTLFRVDMDMDKSSHMDKSSHMDKSSHKDTHLHSIEGRDNSSYH  112 (162)
Q Consensus        57 ~~~NFdnf~~AmlTLF~i~T~e~W~~Im~d~~~~~~~~~~~~~~~s~~~~~~~~~~  112 (162)
                      ...|||++++|+++||+++|.+||.++|+.  .+|+...+     -+|....+.|.
T Consensus      1029 ~~~nfDnv~~a~laLf~v~tf~GW~~i~~~--~ids~~~~-----~~p~~~~~~~~ 1077 (1592)
T KOG2301|consen 1029 RKFNFDNVGNAMLALFQVATFKGWPDIMYA--AIDSRGVN-----AQPILESNLYM 1077 (1592)
T ss_pred             cccccccHHHHHHHHHHHHhcCCHHHHHHH--HhhhhccC-----cCCcccccccc
Confidence            689999999999999999999999999999  45543332     13555555554

>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins

Probab=98.72  E-value=2.4e-08  Score=75.94  Aligned_cols=87  Identities=24%  Similarity=0.450  Sum_probs=70.5

Q ss_pred             chhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhccc--ccCC--CCCcCCCCCCCCcccHHHHHHHHHHHhhc
Q psy6930           2 AKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRL--ECSD--ELPCQGLGEHAHFSNFGMAFLTLFRVDMD   77 (162)
Q Consensus         2 ~~gLr~lv~tl~~Slp~l~nv~lLllL~~fIFAIlGmqLF~~~--~c~~--~~~C~~i~~~~NFdnf~~AmlTLF~i~T~   77 (162)
                      .+.++.++.++.++++.+..++++++++++.||++|.++|+..  .|.+  .....+.....+|++++.|++++|+++|+
T Consensus        80 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~f~~~~~s~~~~~~~~t~  159 (200)
T PF00520_consen   80 FRSLRRLLRALIRSFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSCCDPTWDSENDIYGYENFDSFGESLYWLFQTMTG  159 (200)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-------SS----SSTHHHHSSHHHHHHHHHHHHTT
T ss_pred             cccccccccccccccccccccccccccccccccchhheeccccccccccccccccccccccccccccccccccccccccc
Confidence            4678899999999999999999999999999999999999853  2221  01122345678999999999999999999


Q ss_pred             CCHHHHHHhhc
Q psy6930          78 MDKSSHMDKSS   88 (162)
Q Consensus        78 e~W~~Im~d~~   88 (162)
                      ++|.+++..+.
T Consensus       160 ~~~~~~~~~~~  170 (200)
T PF00520_consen  160 EGWGDVMPSCM  170 (200)
T ss_dssp             TTCCCCHHHHH
T ss_pred             CCccccccccc
Confidence            99999999854

The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....

>PLN03223 Polycystin cation channel protein; Provisional

Probab=97.95  E-value=2.8e-05  Score=77.96  Aligned_cols=66  Identities=20%  Similarity=0.282  Sum_probs=60.3

Q ss_pred             chhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcCCCCCCCCcccHHHHHHHHHHHhhcCCH
Q psy6930           2 AKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDELPCQGLGEHAHFSNFGMAFLTLFRVDMDMDK   80 (162)
Q Consensus         2 ~~gLr~lv~tl~~Slp~l~nv~lLllL~~fIFAIlGmqLF~~~~c~~~~~C~~i~~~~NFdnf~~AmlTLF~i~T~e~W   80 (162)
                      .|.|+.+..++.+++|.|++++++++++++.||++|..+||...             ..|.+|+.|+.|||+++.|+.+
T Consensus      1313 NPrL~vLt~TLrrAapDLa~F~IIF~IVF~AFAqLG~LLFGt~v-------------e~FSTf~sSL~TLFqMLLGDfd 1378 (1634)
T PLN03223       1313 QPRLGVITRTLWLAGADLMHFFVIFGMVFVGYAFIGHVIFGNAS-------------VHFSDMTDSINSLFENLLGDIT 1378 (1634)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-------------hhhcCHHHHHHHHHHHHHcCch
Confidence            47899999999999999999999999999999999999998632             3799999999999999999755

>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys

Probab=96.70  E-value=0.0076  Score=53.51  Aligned_cols=64  Identities=28%  Similarity=0.508  Sum_probs=57.7

Q ss_pred             chhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcCCCCCCCCcccHHHHHHHHHHHhhcC
Q psy6930           2 AKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDELPCQGLGEHAHFSNFGMAFLTLFRVDMDM   78 (162)
Q Consensus         2 ~~gLr~lv~tl~~Slp~l~nv~lLllL~~fIFAIlGmqLF~~~~c~~~~~C~~i~~~~NFdnf~~AmlTLF~i~T~e   78 (162)
                      .|.+..+..++-++.+.+..++++++++++-||.+|.-+||...             .+|.++..|+.|+|+++-++
T Consensus       318 ~~~~~~~~~tl~~a~~~l~~f~~~~~i~~~~fa~~g~l~fG~~~-------------~~f~s~~~s~~tl~~~l~g~  381 (425)
T PF08016_consen  318 NRRLSLLSRTLRRAAKDLLGFFVIFLIIFLAFAQAGYLLFGSYS-------------EDFSSFSSSLVTLFRMLLGD  381 (425)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc-------------cccCCHHHHHHHHHHHhcCC
Confidence            46788999999999999999999999999999999999998632             37999999999999988776

Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].

>KOG3599|consensus

Probab=95.84  E-value=0.035  Score=53.99  Aligned_cols=63  Identities=30%  Similarity=0.558  Sum_probs=55.1

Q ss_pred             chhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcCCCCCCCCcccHHHHHHHHHHHhhc
Q psy6930           2 AKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDELPCQGLGEHAHFSNFGMAFLTLFRVDMD   77 (162)
Q Consensus         2 ~~gLr~lv~tl~~Slp~l~nv~lLllL~~fIFAIlGmqLF~~~~c~~~~~C~~i~~~~NFdnf~~AmlTLF~i~T~   77 (162)
                      .+.++..-.|+-++.|.|..+.+..+++++-||.+|..+||...             .+|.+|..+++|++...-|
T Consensus       575 ~~t~~~~s~TL~ra~~~I~gf~l~~~I~~~aya~l~~llfG~~v-------------~~f~~f~~s~~t~~~~~~G  637 (798)
T KOG3599|consen  575 NKTMSQFSSTLSRAWKEIVGFALMFLILFFAYAQLGYLLFGNQV-------------SDFRTFVASIVTLLRYILG  637 (798)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc-------------CChHHHHHHHHHHHHHHhc
Confidence            46788899999999999999999999999999999999999632             3688888888888877766

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=83.27  E-value=6.5  Score=37.31  Aligned_cols=71  Identities=13%  Similarity=0.133  Sum_probs=50.0

Q ss_pred             HHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcCC------CCCCCCcccHHHHHHHHHHHhhcC
Q psy6930           8 LLDTVMQALP-QVGNLGLLFFLLFFIFAALGVELFGRLECSDELPCQG------LGEHAHFSNFGMAFLTLFRVDMDM   78 (162)
Q Consensus         8 lv~tl~~Slp-~l~nv~lLllL~~fIFAIlGmqLF~~~~c~~~~~C~~------i~~~~NFdnf~~AmlTLF~i~T~e   78 (162)
                      ++.++.+.+. .+..++++++++++-||+-..++|..........|..      ......|.++..++.+||...-|+
T Consensus       496 ~~i~l~~mi~~dl~~F~~i~~v~l~aF~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~s~~~lf~~~~G~  573 (743)
T TIGR00870       496 LQIMIGRMILGDILRFLFIYAVVLFGFACGLNQLYQYYDELKLNECSNPHARSCEKQGNAYSTLFETSQELFWAIIGL  573 (743)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccccccccCHHHHHHHHHHHHcCC
Confidence            4556677888 9999999999999999999999996432111111110      022467889999999999766554

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	162
4dxw_A	229	Navrh, ION transport protein; tetrameric, voltage-	4e-18
3rvy_A	285	ION transport protein; tetrameric ION channel, vol	8e-17

>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114} Length = 229

 Score = 77.0 bits (190), Expect = 4e-18
 Identities = 15/74 (20%), Positives = 41/74 (55%), Gaps = 12/74 (16%)

Query: 1   MAKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDELPCQGLGEHAH 60
           +   ++ +++ +++++ +V  + LL F++ +I+A +G  LFG              + + 
Sbjct: 115 VIPELKQIIEAILESVRRVFFVSLLLFIILYIYATMGAILFGN------------DDPSR 162

Query: 61  FSNFGMAFLTLFRV 74
           + + G++ +TLF+V
Sbjct: 163 WGDLGISLITLFQV 176

>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 3rw0_A* Length = 285

 Score = 74.4 bits (183), Expect = 8e-17
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 12/74 (16%)

Query: 1   MAKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDELPCQGLGEHAH 60
               +R ++  ++  +P + ++  L  L F+IFA +  +LFG                  
Sbjct: 130 AVPQMRKIVSALISVIPGMLSVIALMTLFFYIFAIMATQLFGER------------FPEW 177

Query: 61  FSNFGMAFLTLFRV 74
           F   G +F TLF+V
Sbjct: 178 FGTLGESFYTLFQV 191

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	162
4dxw_A	229	Navrh, ION transport protein; tetrameric, voltage-	99.57
4f4l_A	112	ION transport protein; alpha helical membrane prot	99.55
3rvy_A	285	ION transport protein; tetrameric ION channel, vol	99.18
2r9r_B	514	Paddle chimera voltage gated potassium channel KV;	97.53
3beh_A	355	MLL3241 protein; transmembrane protein, membrane p	96.82

>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}

Probab=99.57  E-value=1.2e-14  Score=116.43  Aligned_cols=76  Identities=21%  Similarity=0.498  Sum_probs=70.4

Q ss_pred             chhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcCCCCCCCCcccHHHHHHHHHHHhhcCCHH
Q psy6930           2 AKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDELPCQGLGEHAHFSNFGMAFLTLFRVDMDMDKS   81 (162)
Q Consensus         2 ~~gLr~lv~tl~~Slp~l~nv~lLllL~~fIFAIlGmqLF~~~~c~~~~~C~~i~~~~NFdnf~~AmlTLF~i~T~e~W~   81 (162)
                      .|++|.++.++.+++|+++++.+++++++++||++|+++|++..            +.||++++.|++++|+++|+|||.
T Consensus       116 ~~~l~~l~~~l~~s~~~l~~~~~~l~~~~~ifa~~g~~lf~~~~------------~~~F~~~~~a~~~lf~~~t~~~w~  183 (229)
T 4dxw_A          116 IPELKQIIEAILESVRRVFFVSLLLFIILYIYATMGAILFGNDD------------PSRWGDLGISLITLFQVLTLSSWE  183 (229)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTS------------CTTTSSHHHHHHHHHHHHTTSSTH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC------------cccccCHHHHHHHHHHHHccCCHH
Confidence            47899999999999999999999999999999999999998743            358999999999999999999999


Q ss_pred             HHHHhhcc
Q psy6930          82 SHMDKSSH   89 (162)
Q Consensus        82 ~Im~d~~~   89 (162)
                      ++|++++.
T Consensus       184 ~i~~~~~~  191 (229)
T 4dxw_A          184 TVMLPMQE  191 (229)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHH
Confidence            99999654

>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}

Probab=99.55  E-value=5.4e-16  Score=114.46  Aligned_cols=60  Identities=23%  Similarity=0.362  Sum_probs=48.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcCCCCCCCCcccHHHHHHHHHHHhhcCCHHHHHHh
Q psy6930          15 ALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDELPCQGLGEHAHFSNFGMAFLTLFRVDMDMDKSSHMDK   86 (162)
Q Consensus        15 Slp~l~nv~lLllL~~fIFAIlGmqLF~~~~c~~~~~C~~i~~~~NFdnf~~AmlTLF~i~T~e~W~~Im~d   86 (162)
                      ++++++|+++++++++||||++|+++|++..            +.||+|+++|++|||+++|+|+|.++|++
T Consensus         2 s~~g~~nv~~ll~l~~~ifAi~G~~lFg~~~------------~~~F~~~~~s~ltLF~i~T~e~W~~~~~~   61 (112)
T 4f4l_A            2 SHMGVGSVAALLTVVFYIAAVMATNLYGATF------------PEWFGDLSKSLYTLFQVMTLESWSMGIVR   61 (112)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHHTTTC------------HHHHSSHHHHHHHHHHHHTTTTCCCCCHH
T ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHCCCc------------cccccCHHHHHHHHHHHHHccccHHHHHH
Confidence            6789999999999999999999999998643            34799999999999999999999876655

>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*

Probab=99.18  E-value=1.6e-11  Score=101.18  Aligned_cols=75  Identities=25%  Similarity=0.420  Sum_probs=68.8

Q ss_pred             chhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcCCCCCCCCcccHHHHHHHHHHHhhcCCHH
Q psy6930           2 AKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDELPCQGLGEHAHFSNFGMAFLTLFRVDMDMDKS   81 (162)
Q Consensus         2 ~~gLr~lv~tl~~Slp~l~nv~lLllL~~fIFAIlGmqLF~~~~c~~~~~C~~i~~~~NFdnf~~AmlTLF~i~T~e~W~   81 (162)
                      .+++|.++.++.+++|.++++++++++++++||++|+++|++..            +.||++++.|+.++|+++|++||.
T Consensus       131 ~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~fa~~g~~~f~~~~------------~~~F~s~~~a~~~~~~~~T~~g~~  198 (285)
T 3rvy_A          131 VPQMRKIVSALISVIPGMLSVIALMTLFFYIFAIMATQLFGERF------------PEWFGTLGESFYTLFQVMTLESWS  198 (285)
T ss_dssp             STTHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHTTTC------------HHHHSSHHHHHHHHHHHHTTTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc------------ccccCCHHHHHHHHHHHHHhCCCc
Confidence            47899999999999999999999999999999999999998532            347999999999999999999999


Q ss_pred             -HHHHhhc
Q psy6930          82 -SHMDKSS   88 (162)
Q Consensus        82 -~Im~d~~   88 (162)
                       ++|++++
T Consensus       199 ~di~~p~~  206 (285)
T 3rvy_A          199 MGIVRPLM  206 (285)
T ss_dssp             CCCHHHHH
T ss_pred             HHHHHHHH
Confidence             9998853

>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*

Probab=97.53  E-value=0.00015  Score=65.00  Aligned_cols=69  Identities=16%  Similarity=0.206  Sum_probs=56.2

Q ss_pred             chhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcCCCCCCCCcccHHHHHHHHHHHhhcCCHH
Q psy6930           2 AKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDELPCQGLGEHAHFSNFGMAFLTLFRVDMDMDKS   81 (162)
Q Consensus         2 ~~gLr~lv~tl~~Slp~l~nv~lLllL~~fIFAIlGmqLF~~~~c~~~~~C~~i~~~~NFdnf~~AmlTLF~i~T~e~W~   81 (162)
                      .+++|.+..++..+++.++.+++++++++++||.++....+.            ....+|++++.|++..+..+|..||.
T Consensus       326 ~~~l~~l~~tl~~s~~~l~~ll~~l~i~~~if~~~~~~~e~~------------~~~~~F~s~~~a~y~~~vT~TTvGYG  393 (514)
T 2r9r_B          326 SKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEAD------------ERDSQFPSIPDAFWWAVVSMTTVGYG  393 (514)
T ss_dssp             CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTT------------CTTCSCSSHHHHHHHHHHHHTTCCCS
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecc------------CCCccccchhhhhheeeeEEEecccC
Confidence            467899999999999999998888888888898887754322            23568999999999999999988864


Q ss_pred             H
Q psy6930          82 S   82 (162)
Q Consensus        82 ~   82 (162)
                      +
T Consensus       394 D  394 (514)
T 2r9r_B          394 D  394 (514)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*

Probab=96.82  E-value=0.0012  Score=55.23  Aligned_cols=69  Identities=10%  Similarity=0.032  Sum_probs=56.0

Q ss_pred             chhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcCCCCCCCCcccHHHHHHHHHHHhhcCCHH
Q psy6930           2 AKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDELPCQGLGEHAHFSNFGMAFLTLFRVDMDMDKS   81 (162)
Q Consensus         2 ~~gLr~lv~tl~~Slp~l~nv~lLllL~~fIFAIlGmqLF~~~~c~~~~~C~~i~~~~NFdnf~~AmlTLF~i~T~e~W~   81 (162)
                      .+++|.+..++.++.+.+..+++++++++++||+++..+++...            +.+|.+++.|+...+..+|..||.
T Consensus       112 ~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~a~~~~~~e~~~~------------~~~f~~~~~s~y~~~~t~ttvGyg  179 (355)
T 3beh_A          112 STFFPVLGRVLANEARNLIGVTTLFGVVLFAVALAAYVIERDIQ------------PEKFGSIPQAMWWAVVTLSTTGYG  179 (355)
T ss_dssp             CSSHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC------------HHHHSSHHHHHHHHHHHHTTCCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC------------CcccccHHHHHHHHHhheeecCCC
Confidence            35788889999999999999999999999999999998876432            235778888888888888877764


Q ss_pred             H
Q psy6930          82 S   82 (162)
Q Consensus        82 ~   82 (162)
                      +
T Consensus       180 d  180 (355)
T 3beh_A          180 D  180 (355)
T ss_dssp             S
T ss_pred             C
Confidence            3

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00