Psyllid ID: psy700

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90---
Protein Sequence
MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEEEKEEEGEEEDNEKEEKEKKEEEEEEEEEEKN
Secondary Structure (PSIPRED)
ccccccccccccccccccEEEEccccEEEcccccccccccccccccccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccHHcccEEEcccccccEEEEcccEEEEEcccHEEHHHHHccccccccccccccccccHHHcccccccHHcccHHHHHccHHHHHHHccccc
Coil and Loop (DISEMBL)
mgylhargilhkdlksknifieknnkvvITDFGLFNFSKLynsytsnekpssplgegkeeeeekeeegeeednekEEKEKKEEEEEEEEEEKN
Flexible Loop (DISEMBL)
mgylhargilhkdlksknifiekNNKVVITDFGLFNFSKLYNsytsnekpssplgegkeeeeekeeegeeednekeekekkeeeeeeeeeekn
Low Complexity Region (SEG)
MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLgegkeeeeekeeegeeednekeekekkeeeeeeeeeekN
Disordered region (IsUnstruct)
***LHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSY*************************************************
Disordered Region (DISOPRED)
MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS*******************************************************
Disordered Region (DISEMBL)
MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSY*************************************************
Disordered Region (DISPRO)
*GYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYN***************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	93	2.2.26 [Sep-21-2011]
Q6VAB6	950	Kinase suppressor of Ras	yes	N/A	0.451	0.044	0.697	8e-12
Q3UVC0	959	Kinase suppressor of Ras	yes	N/A	0.451	0.043	0.697	9e-12
Q61097	873	Kinase suppressor of Ras	no	N/A	0.397	0.042	0.763	3e-11
Q8IVT5	921	Kinase suppressor of Ras	no	N/A	0.397	0.040	0.763	3e-11
Q21017	822	Serine/threonine-protein	no	N/A	0.569	0.064	0.392	3e-07
A8WRV1	813	Serine/threonine-protein	N/A	N/A	0.569	0.065	0.375	2e-06
Q9HFF4	1023	Serine/threonine-protein	yes	N/A	0.365	0.033	0.5	3e-06
P10398	606	Serine/threonine-protein	no	N/A	0.548	0.084	0.450	8e-06
O19004	606	Serine/threonine-protein	no	N/A	0.548	0.084	0.450	8e-06
Q03002	865	Fatty acyl-CoA synthetase	yes	N/A	0.365	0.039	0.5	8e-06

>sp|Q6VAB6|KSR2_HUMAN Kinase suppressor of Ras 2 OS=Homo sapiens GN=KSR2 PE=1 SV=2

 Score = 68.9 bits (167), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 36/43 (83%), Gaps = 1/43 (2%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNS 43
           MGYLHA+GILHKDLKSKN+F + N KVVITDFGLF+ S +  +
Sbjct: 774 MGYLHAKGILHKDLKSKNVFYD-NGKVVITDFGLFSISGVLQA 815

Location-regulated scaffold connecting MEK to RAF. Blocks MAP3K8 kinase activity and MAP3K8-mediated signaling. Acts as a negative regulator of MAP3K3-mediated activation of ERK, JNK and NF-kappa-B pathways, inhibiting MAP3K3-mediated interleukin-8 production.
Homo sapiens (taxid: 9606)

>sp|Q3UVC0|KSR2_MOUSE Kinase suppressor of Ras 2 OS=Mus musculus GN=Ksr2 PE=2 SV=2

 Score = 68.9 bits (167), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 36/43 (83%), Gaps = 1/43 (2%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNS 43
           MGYLHA+GILHKDLKSKN+F + N KVVITDFGLF+ S +  +
Sbjct: 784 MGYLHAKGILHKDLKSKNVFYD-NGKVVITDFGLFSISGVLQA 825

Location-regulated scaffold connecting MEK to RAF. Blocks MAP3K8 kinase activity and MAP3K8-mediated signaling. Acts as a negative regulator of MAP3K3-mediated activation of ERK, JNK and NF-kappa-B pathways, inhibiting MAP3K3-mediated interleukin-8 production.

Mus musculus (taxid: 10090)

>sp|Q61097|KSR1_MOUSE Kinase suppressor of Ras 1 OS=Mus musculus GN=Ksr1 PE=1 SV=1

 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 29/38 (76%), Positives = 33/38 (86%), Gaps = 1/38 (2%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS 38
           MGYLHA+GI+HKDLKSKN+F + N KVVITDFGLF  S
Sbjct: 671 MGYLHAKGIVHKDLKSKNVFYD-NGKVVITDFGLFGIS 707

Location-regulated scaffolding protein connecting MEK to RAF. Promotes MEK and RAF phosphorylation and activity through assembly of an activated signaling complex. By itself, it has no demonstrated kinase activity.

Mus musculus (taxid: 10090)

>sp|Q8IVT5|KSR1_HUMAN Kinase suppressor of Ras 1 OS=Homo sapiens GN=KSR1 PE=1 SV=2

 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 29/38 (76%), Positives = 33/38 (86%), Gaps = 1/38 (2%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS 38
           MGYLHA+GI+HKDLKSKN+F + N KVVITDFGLF  S
Sbjct: 719 MGYLHAKGIVHKDLKSKNVFYD-NGKVVITDFGLFGIS 755

Location-regulated scaffolding protein connecting MEK to RAF. Promotes MEK and RAF phosphorylation and activity through assembly of an activated signaling complex. By itself, it has no demonstrated kinase activity.

Homo sapiens (taxid: 9606)

>sp|Q21017|KIN29_CAEEL Serine/threonine-protein kinase kin-29 OS=Caenorhabditis elegans GN=kin-29 PE=1 SV=2

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 38/56 (67%), Gaps = 3/56 (5%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS---KLYNSYTSNEKPSSP 53
           + YLH++GI+H+DLK++NI + KN+ + I DFG  NF    +L N++  +   ++P
Sbjct: 126 VAYLHSQGIVHRDLKAENILLGKNSNIKIIDFGFSNFQTGDQLLNTWCGSPPYAAP 181

Regulates chemoreceptor expression by phosphorylating the hda-4 class II histone deacetylase (HDAC) and inhibiting the gene repression functions of hda-4 and the mef-2 transcription factor, enabling the correct sensing and transduction of food signals. Role in determining body size, the dauer decision and serotonin-mediated egg laying. May modulate the Sma/Mab pathway and regulates development in the later larval stages.

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|A8WRV1|KIN29_CAEBR Serine/threonine-protein kinase kin-29 OS=Caenorhabditis briggsae GN=kin-29 PE=3 SV=2

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 38/56 (67%), Gaps = 3/56 (5%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS---KLYNSYTSNEKPSSP 53
           + YLH +GI+H+DLK++NI + K++K+ + DFG  NF    +L N++  +   ++P
Sbjct: 128 VSYLHNKGIVHRDLKTENILLGKDSKIKLIDFGFSNFQTPDQLLNTWCGSPPYAAP 183

Regulates chemoreceptor expression by phosphorylating the hda-4 class II histone deacetylase (HDAC) and inhibiting the gene repression functions of hda-4 and the mef-2 transcription factor, enabling the correct sensing and transduction of food signals. Role in determining body size, the dauer decision and serotonin-mediated egg laying. May modulate the Sma/Mab pathway and regulates development in the later larval stages.

Caenorhabditis briggsae (taxid: 6238)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9HFF4|PPK1_SCHPO Serine/threonine-protein kinase ppk1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ppk1 PE=1 SV=2

 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 26/34 (76%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           + YLH+RG++H+DLK +NI ++ N  +VI DFG 
Sbjct: 611 VAYLHSRGVVHRDLKLENILLDTNRNIVIADFGF 644

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P10398|ARAF_HUMAN Serine/threonine-protein kinase A-Raf OS=Homo sapiens GN=ARAF PE=1 SV=2

 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 31/51 (60%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPS 51
           M YLHA+ I+H+DLKS NIF+ +   V I DFGL      ++     E+PS
Sbjct: 417 MDYLHAKNIIHRDLKSNNIFLHEGLTVKIGDFGLATVKTRWSGAQPLEQPS 467

Involved in the transduction of mitogenic signals from the cell membrane to the nucleus.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O19004|ARAF_PIG Serine/threonine-protein kinase A-Raf OS=Sus scrofa GN=ARAF PE=2 SV=1

 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 31/51 (60%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPS 51
           M YLHA+ I+H+DLKS NIF+ +   V I DFGL      ++     E+PS
Sbjct: 417 MDYLHAKNIIHRDLKSNNIFLHEGLTVKIGDFGLATVKTRWSGAQPLEQPS 467

Involved in the transduction of mitogenic signals from the cell membrane to the nucleus.

Sus scrofa (taxid: 9823)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q03002|FRK1_YEAST Fatty acyl-CoA synthetase and RNA processing-associated kinase 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FRK1 PE=1 SV=1

 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 28/34 (82%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGLFN 36
           Y+H++G++H+DLK +N+ ++KN  +VITDFG  N
Sbjct: 165 YIHSKGLVHRDLKLENLLLDKNENLVITDFGFVN 198

Putative serine/threonine-protein kinase that may be involved in rRNA transcription and ribosome biogenesis.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	93
383861184	900	PREDICTED: kinase suppressor of Ras 1-li	0.559	0.057	0.685	2e-12
443714848	536	hypothetical protein CAPTEDRAFT_228240 [	0.580	0.100	0.690	2e-12
156548452	897	PREDICTED: kinase suppressor of Ras 1-li	0.494	0.051	0.75	3e-12
189239951	874	PREDICTED: similar to kinase suppressor	0.580	0.061	0.672	3e-12
345485975	920	PREDICTED: kinase suppressor of Ras 1-li	0.494	0.05	0.75	3e-12
321458366	927	hypothetical protein DAPPUDRAFT_329047 [	0.419	0.042	0.825	4e-12
340711827	913	PREDICTED: kinase suppressor of Ras 2-li	0.419	0.042	0.825	5e-12
350402744	913	PREDICTED: kinase suppressor of Ras 2-li	0.419	0.042	0.825	5e-12
307169064	901	Kinase suppressor of Ras 2 [Camponotus f	0.419	0.043	0.825	5e-12
391340414	813	PREDICTED: kinase suppressor of Ras 1-li	0.419	0.047	0.825	2e-11

>gi|383861184|ref|XP_003706066.1| PREDICTED: kinase suppressor of Ras 1-like [Megachile rotundata]

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/54 (68%), Positives = 42/54 (77%), Gaps = 2/54 (3%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKL-YNSYTSNEKPSSP 53
           MGYLHARGI+HKDLKSKNIF+E N KVVITDFGLF+ +KL Y + T N     P
Sbjct: 718 MGYLHARGIIHKDLKSKNIFLE-NGKVVITDFGLFSVTKLCYGNRTGNALSIPP 770

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443714848|gb|ELU07085.1| hypothetical protein CAPTEDRAFT_228240 [Capitella teleta]

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/55 (69%), Positives = 42/55 (76%), Gaps = 1/55 (1%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLG 55
           MGYLHA+GI+HKDLKSKNIFIE N KVVITDFGLFN +KL +     E  S P G
Sbjct: 357 MGYLHAKGIVHKDLKSKNIFIE-NGKVVITDFGLFNVTKLCHGNRKGEWLSIPPG 410

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|156548452|ref|XP_001605076.1| PREDICTED: kinase suppressor of Ras 1-like isoform 1 [Nasonia vitripennis]

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/48 (75%), Positives = 41/48 (85%), Gaps = 2/48 (4%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKL-YNSYTSN 47
           MGYLHARGI+HKDLKSKNIF+E N KVVITDFGLF+ +KL Y + T N
Sbjct: 715 MGYLHARGIVHKDLKSKNIFLE-NGKVVITDFGLFSVTKLCYGNRTGN 761

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189239951|ref|XP_001812757.1| PREDICTED: similar to kinase suppressor of ras CG2899-PA [Tribolium castaneum] gi|270011828|gb|EFA08276.1| hypothetical protein TcasGA2_TC005910 [Tribolium castaneum]

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 37/55 (67%), Positives = 42/55 (76%), Gaps = 1/55 (1%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLG 55
           MGYLHARGI+HKDLKSKNIF+E N KVVITDFGLF+ +KL      N+  S P G
Sbjct: 693 MGYLHARGIVHKDLKSKNIFLE-NGKVVITDFGLFSVTKLCFGNRQNDGLSIPPG 746

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345485975|ref|XP_003425378.1| PREDICTED: kinase suppressor of Ras 1-like isoform 2 [Nasonia vitripennis]

 Score = 75.5 bits (184), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/48 (75%), Positives = 41/48 (85%), Gaps = 2/48 (4%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKL-YNSYTSN 47
           MGYLHARGI+HKDLKSKNIF+E N KVVITDFGLF+ +KL Y + T N
Sbjct: 738 MGYLHARGIVHKDLKSKNIFLE-NGKVVITDFGLFSVTKLCYGNRTGN 784

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321458366|gb|EFX69435.1| hypothetical protein DAPPUDRAFT_329047 [Daphnia pulex]

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 33/40 (82%), Positives = 37/40 (92%), Gaps = 1/40 (2%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKL 40
           MGYLHARGI+HKDLKSKNIF+E N KV+ITDFGLF+ SKL
Sbjct: 773 MGYLHARGIIHKDLKSKNIFLE-NGKVIITDFGLFSVSKL 811

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340711827|ref|XP_003394470.1| PREDICTED: kinase suppressor of Ras 2-like [Bombus terrestris]

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 33/40 (82%), Positives = 37/40 (92%), Gaps = 1/40 (2%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKL 40
           MGYLHARGI+HKDLKSKNIF+E N KVVITDFGLF+ +KL
Sbjct: 717 MGYLHARGIIHKDLKSKNIFLE-NGKVVITDFGLFSVTKL 755

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350402744|ref|XP_003486588.1| PREDICTED: kinase suppressor of Ras 2-like [Bombus impatiens]

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 33/40 (82%), Positives = 37/40 (92%), Gaps = 1/40 (2%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKL 40
           MGYLHARGI+HKDLKSKNIF+E N KVVITDFGLF+ +KL
Sbjct: 717 MGYLHARGIIHKDLKSKNIFLE-NGKVVITDFGLFSVTKL 755

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307169064|gb|EFN61908.1| Kinase suppressor of Ras 2 [Camponotus floridanus]

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 33/40 (82%), Positives = 37/40 (92%), Gaps = 1/40 (2%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKL 40
           MGYLHARGI+HKDLKSKNIF+E N KVVITDFGLF+ +KL
Sbjct: 719 MGYLHARGIVHKDLKSKNIFLE-NGKVVITDFGLFSVTKL 757

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|391340414|ref|XP_003744536.1| PREDICTED: kinase suppressor of Ras 1-like [Metaseiulus occidentalis]

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/40 (82%), Positives = 36/40 (90%), Gaps = 1/40 (2%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKL 40
           MGYLHARGILHKDLK+KNIF E N KVVITDFGLF+ +KL
Sbjct: 633 MGYLHARGILHKDLKTKNIFYE-NGKVVITDFGLFSVAKL 671

Source: Metaseiulus occidentalis

Species: Metaseiulus occidentalis

Genus: Metaseiulus

Family: Phytoseiidae

Order: Mesostigmata

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	93
UNIPROTKB|F1RKG1	804	KSR2 "Uncharacterized protein"	0.516	0.059	0.632	3e-10
RGD|1562674	899	Ksr2 "kinase suppressor of ras	0.516	0.053	0.632	3.5e-10
UNIPROTKB|F1MF36	949	KSR2 "Uncharacterized protein"	0.516	0.050	0.632	3.8e-10
MGI|MGI:3610315	959	Ksr2 "kinase suppressor of ras	0.516	0.050	0.632	3.8e-10
UNIPROTKB|F1NCU3	754	F1NCU3 "Uncharacterized protei	0.397	0.049	0.789	4.5e-10
UNIPROTKB|E9PB13	921	KSR2 "Kinase suppressor of Ras	0.516	0.052	0.632	4.6e-10
UNIPROTKB|F1P721	949	KSR2 "Uncharacterized protein"	0.516	0.050	0.632	4.8e-10
UNIPROTKB|Q6VAB6	950	KSR2 "Kinase suppressor of Ras	0.516	0.050	0.632	4.8e-10
UNIPROTKB|E1BFS2	848	Bt.26557 "Uncharacterized prot	0.397	0.043	0.763	5.7e-10
UNIPROTKB|F1RJ53	849	KSR1 "Uncharacterized protein"	0.397	0.043	0.763	5.7e-10

UNIPROTKB|F1RKG1 KSR2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 157 (60.3 bits), Expect = 3.0e-10, P = 3.0e-10
 Identities = 31/49 (63%), Positives = 39/49 (79%)

Query:     1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEK 49
             MGYLHA+GILHKDLKSKN+F + N KVVITDFGLF+ S +  +   ++K
Sbjct:   628 MGYLHAKGILHKDLKSKNVFYD-NGKVVITDFGLFSISGVLQAGRRDDK 675

GO:0043410 "positive regulation of MAPK cascade" evidence=IEA

GO:0031434 "mitogen-activated protein kinase kinase binding" evidence=IEA

GO:0019722 "calcium-mediated signaling" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005078 "MAP-kinase scaffold activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

RGD|1562674 Ksr2 "kinase suppressor of ras 2" [Rattus norvegicus (taxid:10116)]

 Score = 157 (60.3 bits), Expect = 3.5e-10, P = 3.5e-10
 Identities = 31/49 (63%), Positives = 39/49 (79%)

Query:     1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEK 49
             MGYLHA+GILHKDLKSKN+F + N KVVITDFGLF+ S +  +   ++K
Sbjct:   724 MGYLHAKGILHKDLKSKNVFYD-NGKVVITDFGLFSISGVLQAGRRDDK 771

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005078 "MAP-kinase scaffold activity" evidence=ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0005622 "intracellular" evidence=ISO

GO:0005829 "cytosol" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0019722 "calcium-mediated signaling" evidence=ISO

GO:0031434 "mitogen-activated protein kinase kinase binding" evidence=ISO

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0043410 "positive regulation of MAPK cascade" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1MF36 KSR2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 157 (60.3 bits), Expect = 3.8e-10, P = 3.8e-10
 Identities = 31/49 (63%), Positives = 39/49 (79%)

Query:     1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEK 49
             MGYLHA+GILHKDLKSKN+F + N KVVITDFGLF+ S +  +   ++K
Sbjct:   774 MGYLHAKGILHKDLKSKNVFYD-NGKVVITDFGLFSISGVLQAGRRDDK 821

GO:0043410 "positive regulation of MAPK cascade" evidence=IEA

GO:0031434 "mitogen-activated protein kinase kinase binding" evidence=IEA

GO:0019722 "calcium-mediated signaling" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005078 "MAP-kinase scaffold activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

MGI|MGI:3610315 Ksr2 "kinase suppressor of ras 2" [Mus musculus (taxid:10090)]

 Score = 157 (60.3 bits), Expect = 3.8e-10, P = 3.8e-10
 Identities = 31/49 (63%), Positives = 39/49 (79%)

Query:     1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEK 49
             MGYLHA+GILHKDLKSKN+F + N KVVITDFGLF+ S +  +   ++K
Sbjct:   784 MGYLHAKGILHKDLKSKNVFYD-NGKVVITDFGLFSISGVLQAGRRDDK 831

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005078 "MAP-kinase scaffold activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA

GO:0005622 "intracellular" evidence=IGI

GO:0005737 "cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0019722 "calcium-mediated signaling" evidence=IGI

GO:0031434 "mitogen-activated protein kinase kinase binding" evidence=IDA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0043410 "positive regulation of MAPK cascade" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1NCU3 F1NCU3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 155 (59.6 bits), Expect = 4.5e-10, P = 4.5e-10
 Identities = 30/38 (78%), Positives = 34/38 (89%)

Query:     1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS 38
             MGYLHA+GILHKDLKSKN+F + N KVVITDFGLF+ S
Sbjct:   579 MGYLHAKGILHKDLKSKNVFYD-NGKVVITDFGLFSIS 615

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005078 "MAP-kinase scaffold activity" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0019722 "calcium-mediated signaling" evidence=IEA

GO:0031434 "mitogen-activated protein kinase kinase binding" evidence=IEA

GO:0043410 "positive regulation of MAPK cascade" evidence=IEA

UNIPROTKB|E9PB13 KSR2 "Kinase suppressor of Ras 2" [Homo sapiens (taxid:9606)]

 Score = 156 (60.0 bits), Expect = 4.6e-10, P = 4.6e-10
 Identities = 31/49 (63%), Positives = 38/49 (77%)

Query:     1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEK 49
             MGYLHA+GILHKDLKSKN+F + N KVVITDFGLF+ S +  +    +K
Sbjct:   745 MGYLHAKGILHKDLKSKNVFYD-NGKVVITDFGLFSISGVLQAGRREDK 792

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005078 "MAP-kinase scaffold activity" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0019722 "calcium-mediated signaling" evidence=IEA

GO:0031434 "mitogen-activated protein kinase kinase binding" evidence=IEA

GO:0043410 "positive regulation of MAPK cascade" evidence=IEA

UNIPROTKB|F1P721 KSR2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 156 (60.0 bits), Expect = 4.8e-10, P = 4.8e-10
 Identities = 31/49 (63%), Positives = 38/49 (77%)

Query:     1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEK 49
             MGYLHA+GILHKDLKSKN+F + N KVVITDFGLF+ S +  +    +K
Sbjct:   774 MGYLHAKGILHKDLKSKNVFYD-NGKVVITDFGLFSISGVLQAGRREDK 821

GO:0043410 "positive regulation of MAPK cascade" evidence=IEA

GO:0031434 "mitogen-activated protein kinase kinase binding" evidence=IEA

GO:0019722 "calcium-mediated signaling" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005078 "MAP-kinase scaffold activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

UNIPROTKB|Q6VAB6 KSR2 "Kinase suppressor of Ras 2" [Homo sapiens (taxid:9606)]

 Score = 156 (60.0 bits), Expect = 4.8e-10, P = 4.8e-10
 Identities = 31/49 (63%), Positives = 38/49 (77%)

Query:     1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEK 49
             MGYLHA+GILHKDLKSKN+F + N KVVITDFGLF+ S +  +    +K
Sbjct:   774 MGYLHAKGILHKDLKSKNVFYD-NGKVVITDFGLFSISGVLQAGRREDK 821

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005078 "MAP-kinase scaffold activity" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0019722 "calcium-mediated signaling" evidence=IEA

GO:0031434 "mitogen-activated protein kinase kinase binding" evidence=IEA

GO:0043410 "positive regulation of MAPK cascade" evidence=IEA

UNIPROTKB|E1BFS2 Bt.26557 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 151 (58.2 bits), Expect = 5.7e-10, Sum P(2) = 5.7e-10
 Identities = 29/38 (76%), Positives = 33/38 (86%)

Query:     1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS 38
             MGYLHA+GI+HKDLKSKN+F + N KVVITDFGLF  S
Sbjct:   646 MGYLHAKGIVHKDLKSKNVFYD-NGKVVITDFGLFGIS 682

GO:0043410 "positive regulation of MAPK cascade" evidence=IEA

GO:0005078 "MAP-kinase scaffold activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

UNIPROTKB|F1RJ53 KSR1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 151 (58.2 bits), Expect = 5.7e-10, Sum P(2) = 5.7e-10
 Identities = 29/38 (76%), Positives = 33/38 (86%)

Query:     1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS 38
             MGYLHA+GI+HKDLKSKN+F + N KVVITDFGLF  S
Sbjct:   647 MGYLHAKGIVHKDLKSKNVFYD-NGKVVITDFGLFGIS 683

GO:0043410 "positive regulation of MAPK cascade" evidence=IEA

GO:0005078 "MAP-kinase scaffold activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3UVC0	KSR2_MOUSE	No assigned EC number	0.6976	0.4516	0.0437	yes	N/A
Q6VAB6	KSR2_HUMAN	No assigned EC number	0.6976	0.4516	0.0442	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	93
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	4e-11
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	9e-11
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	6e-10
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	1e-09
cd07829	282	cd07829, STKc_CDK_like, Catalytic domain of Cyclin	7e-09
cd05038	284	cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai	9e-09
cd07841	298	cd07841, STKc_CDK7, Catalytic domain of the Serine	1e-08
cd07866	311	cd07866, STKc_BUR1, Catalytic domain of the Serine	1e-08
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	1e-08
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	2e-08
cd05581	280	cd05581, STKc_PDK1, Catalytic domain of the Protei	2e-08
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	2e-08
cd07834	330	cd07834, STKc_MAPK, Catalytic domain of the Serine	2e-08
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	2e-08
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	7e-08
PHA03207	392	PHA03207, PHA03207, serine/threonine kinase US3; P	9e-08
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	2e-07
cd05579	265	cd05579, STKc_MAST_like, Catalytic domain of Micro	2e-07
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	3e-07
PLN00034	353	PLN00034, PLN00034, mitogen-activated protein kina	5e-07
cd05040	257	cd05040, PTKc_Ack_like, Catalytic domain of the Pr	6e-07
cd07838	287	cd07838, STKc_CDK4_6_like, Catalytic domain of Cyc	9e-07
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	1e-06
cd08221	256	cd08221, STKc_Nek9, Catalytic domain of the Protei	1e-06
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	1e-06
cd07853	372	cd07853, STKc_NLK, Catalytic domain of the Serine/	1e-06
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	2e-06
cd05611	260	cd05611, STKc_Rim15_like, Catalytic domain of fung	2e-06
cd08222	260	cd08222, STKc_Nek11, Catalytic domain of the Prote	2e-06
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	2e-06
PHA03209	357	PHA03209, PHA03209, serine/threonine kinase US3; P	2e-06
cd07835	283	cd07835, STKc_CDK1_like, Catalytic domain of Cycli	2e-06
cd07832	286	cd07832, STKc_CCRK, Catalytic domain of the Serine	2e-06
cd05603	321	cd05603, STKc_SGK2, Catalytic domain of the Protei	2e-06
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	3e-06
cd05118	283	cd05118, STKc_CMGC, Catalytic domain of CMGC famil	3e-06
cd06648	285	cd06648, STKc_PAK_II, Catalytic domain of the Prot	3e-06
cd05057	279	cd05057, PTKc_EGFR_like, Catalytic domain of Epide	3e-06
cd05580	290	cd05580, STKc_PKA, Catalytic domain of the Protein	3e-06
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	4e-06
cd06628	267	cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain o	4e-06
cd06629	272	cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain o	4e-06
cd07852	337	cd07852, STKc_MAPK15, Catalytic domain of the Seri	4e-06
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	4e-06
cd05123	250	cd05123, STKc_AGC, Catalytic domain of AGC family	4e-06
cd07856	328	cd07856, STKc_Sty1_Hog1, Catalytic domain of the S	6e-06
cd05584	323	cd05584, STKc_p70S6K, Catalytic domain of the Prot	6e-06
cd08219	255	cd08219, STKc_Nek3, Catalytic domain of the Protei	7e-06
cd07837	295	cd07837, STKc_CdkB_plant, Catalytic domain of the	7e-06
cd07839	284	cd07839, STKc_CDK5, Catalytic domain of the Serine	8e-06
cd05575	323	cd05575, STKc_SGK, Catalytic domain of the Protein	8e-06
cd08529	256	cd08529, STKc_FA2-like, Catalytic domain of the Pr	9e-06
PHA03211	461	PHA03211, PHA03211, serine/threonine kinase US3; P	1e-05
cd07859	338	cd07859, STKc_TDY_MAPK_plant, Catalytic domain of	1e-05
cd05583	288	cd05583, STKc_MSK_N, N-terminal catalytic domain o	1e-05
PHA03212	391	PHA03212, PHA03212, serine/threonine kinase US3; P	1e-05
PRK13184	932	PRK13184, pknD, serine/threonine-protein kinase; R	2e-05
cd05602	325	cd05602, STKc_SGK1, Catalytic domain of the Protei	2e-05
cd05574	316	cd05574, STKc_phototropin_like, Catalytic domain o	2e-05
cd07865	310	cd07865, STKc_CDK9, Catalytic domain of the Serine	2e-05
cd06917	277	cd06917, STKc_NAK1_like, Catalytic domain of Funga	2e-05
cd05604	325	cd05604, STKc_SGK3, Catalytic domain of the Protei	3e-05
cd05043	280	cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Rece	3e-05
cd05578	258	cd05578, STKc_Yank1, Catalytic domain of the Prote	3e-05
cd07850	353	cd07850, STKc_JNK, Catalytic domain of the Serine/	3e-05
cd07855	334	cd07855, STKc_ERK5, Catalytic domain of the Serine	3e-05
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	4e-05
cd07851	343	cd07851, STKc_p38, Catalytic domain of the Serine/	4e-05
cd08530	256	cd08530, STKc_CNK2-like, Catalytic domain of the P	4e-05
cd08528	269	cd08528, STKc_Nek10, Catalytic domain of the Prote	4e-05
cd06646	267	cd06646, STKc_MAP4K5, Catalytic domain of the Prot	4e-05
pfam03344	715	pfam03344, Daxx, Daxx Family	4e-05
cd05572	262	cd05572, STKc_cGK_PKG, Catalytic domain of the Pro	4e-05
cd05609	305	cd05609, STKc_MAST, Catalytic domain of the Protei	4e-05
cd07858	337	cd07858, STKc_TEY_MAPK_plant, Catalytic domain of	4e-05
cd07863	288	cd07863, STKc_CDK4, Catalytic domain of the Serine	5e-05
cd06659	297	cd06659, STKc_PAK6, Catalytic domain of the Protei	5e-05
cd05571	323	cd05571, STKc_PKB, Catalytic domain of the Protein	5e-05
cd05610	669	cd05610, STKc_MASTL, Catalytic domain of the Prote	5e-05
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	5e-05
cd07842	316	cd07842, STKc_CDK8_like, Catalytic domain of Cycli	5e-05
cd05108	316	cd05108, PTKc_EGFR, Catalytic domain of the Protei	6e-05
cd05035	273	cd05035, PTKc_Axl_like, Catalytic Domain of Axl-li	6e-05
cd08225	257	cd08225, STKc_Nek5, Catalytic domain of the Protei	6e-05
cd05612	291	cd05612, STKc_PRKX_like, Catalytic domain of PRKX-	6e-05
PTZ00024	335	PTZ00024, PTZ00024, cyclin-dependent protein kinas	7e-05
cd07861	285	cd07861, STKc_CDK1_euk, Catalytic domain of the Se	7e-05
cd07849	336	cd07849, STKc_ERK1_2_like, Catalytic domain of Ext	7e-05
PRK01723	239	PRK01723, PRK01723, 3-deoxy-D-manno-octulosonic-ac	7e-05
cd05048	283	cd05048, PTKc_Ror, Catalytic Domain of the Protein	8e-05
cd05081	284	cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2)	8e-05
PLN03224	507	PLN03224, PLN03224, probable serine/threonine prot	8e-05
PTZ00283	496	PTZ00283, PTZ00283, serine/threonine protein kinas	9e-05
cd07833	288	cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dep	9e-05
TIGR03903	1266	TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclas	9e-05
cd05598	376	cd05598, STKc_LATS, Catalytic domain of the Protei	9e-05
cd08218	256	cd08218, STKc_Nek1, Catalytic domain of the Protei	1e-04
cd05080	283	cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) doma	1e-04
cd07869	303	cd07869, STKc_PFTAIRE1, Catalytic domain of the Se	1e-04
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	1e-04
cd06658	292	cd06658, STKc_PAK5, Catalytic domain of the Protei	1e-04
cd05068	261	cd05068, PTKc_Frk_like, Catalytic domain of Fyn-re	1e-04
cd05102	338	cd05102, PTKc_VEGFR3, Catalytic domain of the Prot	1e-04
cd07860	284	cd07860, STKc_CDK2_3, Catalytic domain of the Seri	1e-04
cd07871	288	cd07871, STKc_PCTAIRE3, Catalytic domain of the Se	1e-04
cd05034	261	cd05034, PTKc_Src_like, Catalytic domain of Src ki	1e-04
cd07870	291	cd07870, STKc_PFTAIRE2, Catalytic domain of the Se	1e-04
cd05582	318	cd05582, STKc_RSK_N, N-terminal catalytic domain o	2e-04
cd08223	257	cd08223, STKc_Nek4, Catalytic domain of the Protei	2e-04
cd07864	302	cd07864, STKc_CDK12, Catalytic domain of the Serin	2e-04
cd06621	287	cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of	2e-04
cd05110	303	cd05110, PTKc_HER4, Catalytic domain of the Protei	2e-04
cd06610	267	cd06610, STKc_OSR1_SPAK, Catalytic domain of the P	2e-04
cd07854	342	cd07854, STKc_MAPK4_6, Catalytic domain of the Ser	2e-04
cd05613	290	cd05613, STKc_MSK1_N, N-terminal catalytic domain	2e-04
PTZ00263	329	PTZ00263, PTZ00263, protein kinase A catalytic sub	2e-04
cd05109	279	cd05109, PTKc_HER2, Catalytic domain of the Protei	3e-04
cd05050	288	cd05050, PTKc_Musk, Catalytic domain of the Protei	3e-04
cd06657	292	cd06657, STKc_PAK4, Catalytic domain of the Protei	3e-04
cd06613	262	cd06613, STKc_MAP4K3_like, Catalytic domain of Mit	3e-04
cd05595	323	cd05595, STKc_PKB_beta, Catalytic domain of the Pr	3e-04
cd07843	293	cd07843, STKc_CDC2L1, Catalytic domain of the Seri	3e-04
cd05059	256	cd05059, PTKc_Tec_like, Catalytic domain of Tec-li	3e-04
cd05570	318	cd05570, STKc_PKC, Catalytic domain of the Protein	4e-04
cd07844	291	cd07844, STKc_PCTAIRE_like, Catalytic domain of PC	4e-04
cd08217	265	cd08217, STKc_Nek2, Catalytic domain of the Protei	4e-04
cd05587	324	cd05587, STKc_cPKC, Catalytic domain of the Protei	4e-04
cd05054	337	cd05054, PTKc_VEGFR, Catalytic domain of the Prote	4e-04
cd07836	284	cd07836, STKc_Pho85, Catalytic domain of the Serin	5e-04
cd06645	267	cd06645, STKc_MAP4K3, Catalytic domain of the Prot	5e-04
cd06647	293	cd06647, STKc_PAK_I, Catalytic domain of the Prote	5e-04
cd05103	343	cd05103, PTKc_VEGFR2, Catalytic domain of the Prot	5e-04
PLN00009	294	PLN00009, PLN00009, cyclin-dependent kinase A; Pro	5e-04
cd05052	263	cd05052, PTKc_Abl, Catalytic domain of the Protein	5e-04
cd06608	275	cd06608, STKc_myosinIII_like, Catalytic domain of	5e-04
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	5e-04
cd05629	377	cd05629, STKc_NDR_like_fungal, Catalytic domain of	5e-04
pfam03344	715	pfam03344, Daxx, Daxx Family	6e-04
cd05041	251	cd05041, PTKc_Fes_like, Catalytic domain of Fes-li	6e-04
cd05074	273	cd05074, PTKc_Tyro3, Catalytic domain of the Prote	6e-04
cd05625	382	cd05625, STKc_LATS1, Catalytic domain of the Prote	6e-04
cd07857	332	cd07857, STKc_MPK1, Catalytic domain of the Serine	6e-04
cd08220	256	cd08220, STKc_Nek8, Catalytic domain of the Protei	6e-04
cd05075	272	cd05075, PTKc_Axl, Catalytic domain of the Protein	6e-04
cd05032	277	cd05032, PTKc_InsR_like, Catalytic domain of Insul	6e-04
PTZ00267	478	PTZ00267, PTZ00267, NIMA-related protein kinase; P	6e-04
cd07845	309	cd07845, STKc_CDK10, Catalytic domain of the Serin	7e-04
cd06609	274	cd06609, STKc_MST3_like, Catalytic domain of Mamma	7e-04
cd07872	309	cd07872, STKc_PCTAIRE2, Catalytic domain of the Se	8e-04
cd05619	316	cd05619, STKc_nPKC_theta, Catalytic domain of the	8e-04
cd06612	256	cd06612, STKc_MST1_2, Catalytic domain of the Prot	8e-04
cd07880	343	cd07880, STKc_p38gamma_MAPK12, Catalytic domain of	8e-04
cd07830	283	cd07830, STKc_MAK_like, Catalytic domain of Male g	9e-04
cd05606	278	cd05606, STKc_beta_ARK, Catalytic domain of the Pr	9e-04
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	9e-04
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	0.001
cd07876	359	cd07876, STKc_JNK2, Catalytic domain of the Serine	0.001
cd05614	332	cd05614, STKc_MSK2_N, N-terminal catalytic domain	0.001
cd07847	286	cd07847, STKc_CDKL1_4, Catalytic domain of the Ser	0.001
cd06630	268	cd06630, STKc_MEKK1, Catalytic domain of the Prote	0.001
cd05079	284	cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) doma	0.001
cd05600	333	cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fun	0.001
cd05083	254	cd05083, PTKc_Chk, Catalytic domain of the Protein	0.001
cd07873	301	cd07873, STKc_PCTAIRE1, Catalytic domain of the Se	0.001
cd07862	290	cd07862, STKc_CDK6, Catalytic domain of the Serine	0.001
cd07874	355	cd07874, STKc_JNK3, Catalytic domain of the Serine	0.001
cd08224	267	cd08224, STKc_Nek6_Nek7, Catalytic domain of the P	0.001
PHA03210	501	PHA03210, PHA03210, serine/threonine kinase US3; P	0.001
cd07877	345	cd07877, STKc_p38alpha_MAPK14, Catalytic domain of	0.001
cd06636	282	cd06636, STKc_MAP4K4_6, Catalytic domain of the Pr	0.001
cd05082	256	cd05082, PTKc_Csk, Catalytic domain of the Protein	0.002
cd05099	314	cd05099, PTKc_FGFR4, Catalytic domain of the Prote	0.002
PRK09605	535	PRK09605, PRK09605, bifunctional UGMP family prote	0.002
cd05618	329	cd05618, STKc_aPKC_iota, Catalytic domain of the P	0.002
cd05113	256	cd05113, PTKc_Btk_Bmx, Catalytic domain of the Pro	0.002
cd05592	316	cd05592, STKc_nPKC_theta_delta, Catalytic domain o	0.002
cd07879	342	cd07879, STKc_p38delta_MAPK13, Catalytic domain of	0.002
cd05088	303	cd05088, PTKc_Tie2, Catalytic domain of the Protei	0.002
cd05112	256	cd05112, PTKc_Itk, Catalytic domain of the Protein	0.002
cd05626	381	cd05626, STKc_LATS2, Catalytic domain of the Prote	0.002
cd05033	266	cd05033, PTKc_EphR, Catalytic domain of Ephrin Rec	0.002
cd05051	296	cd05051, PTKc_DDR, Catalytic domain of the Protein	0.002
cd07875	364	cd07875, STKc_JNK1, Catalytic domain of the Serine	0.002
cd05053	293	cd05053, PTKc_FGFR, Catalytic domain of the Protei	0.002
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	0.003
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	0.003
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	0.003
cd07868	317	cd07868, STKc_CDK8, Catalytic domain of the Serine	0.003
cd07878	343	cd07878, STKc_p38beta_MAPK11, Catalytic domain of	0.003
cd05065	269	cd05065, PTKc_EphR_B, Catalytic domain of the Prot	0.003
cd06625	263	cd06625, STKc_MEKK3_like, Catalytic domain of MAP/	0.003
cd05620	316	cd05620, STKc_nPKC_delta, Catalytic domain of the	0.003
cd05588	329	cd05588, STKc_aPKC, Catalytic domain of the Protei	0.003
PHA02882	294	PHA02882, PHA02882, putative serine/threonine kina	0.003
cd07867	317	cd07867, STKc_CDC2L6, Catalytic domain of Serine/T	0.003
cd07846	286	cd07846, STKc_CDKL2_3, Catalytic domain of the Ser	0.003
cd05100	334	cd05100, PTKc_FGFR3, Catalytic domain of the Prote	0.003
cd06617	283	cd06617, PKc_MKK3_6, Catalytic domain of the dual-	0.003
cd05617	327	cd05617, STKc_aPKC_zeta, Catalytic domain of the P	0.003
cd05039	256	cd05039, PTKc_Csk_like, Catalytic domain of C-term	0.003
PRK05299	258	PRK05299, rpsB, 30S ribosomal protein S2; Provisio	0.003
cd06633	313	cd06633, STKc_TAO3, Catalytic domain of the Protei	0.003
cd05066	267	cd05066, PTKc_EphR_A, Catalytic domain of the Prot	0.003
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	0.004
cd05593	328	cd05593, STKc_PKB_gamma, Catalytic domain of the P	0.004
cd05148	261	cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro	0.004
cd05060	257	cd05060, PTKc_Syk_like, Catalytic domain of Spleen	0.004
cd06611	280	cd06611, STKc_SLK_like, Catalytic domain of Ste20-	0.004
cd08228	267	cd08228, STKc_Nek6, Catalytic domain of the Protei	0.004
cd05589	324	cd05589, STKc_PKN, Catalytic domain of the Protein	0.004
cd05061	288	cd05061, PTKc_InsR, Catalytic domain of the Protei	0.004

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 56.5 bits (137), Expect = 4e-11
 Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 5/53 (9%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLG 55
           YLH+ GI+H+DLK +NI +++N  V I DFGL   +K      S+   ++ +G
Sbjct: 113 YLHSNGIIHRDLKPENILLDENGVVKIADFGL---AKKL--LKSSSSLTTFVG 160

Length = 260

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 55.6 bits (135), Expect = 9e-11
 Identities = 20/41 (48%), Positives = 28/41 (68%), Gaps = 3/41 (7%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNS 43
           YLH+R ILH+D+K +NIF+  N  V + DFG    SK+ +S
Sbjct: 118 YLHSRKILHRDIKPQNIFLTSNGLVKLGDFG---ISKVLSS 155

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score = 53.3 bits (129), Expect = 6e-10
 Identities = 16/45 (35%), Positives = 30/45 (66%), Gaps = 3/45 (6%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGL---FNFSKLYNSY 44
           YLH++GI+H+DLK +NI ++++  V + DFGL    +  +   ++
Sbjct: 112 YLHSKGIVHRDLKPENILLDEDGHVKLADFGLARQLDPGEKLTTF 156

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score = 52.5 bits (127), Expect = 1e-09
 Identities = 14/34 (41%), Positives = 23/34 (67%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           M YL ++  +H+DL ++N  + +N  V I+DFGL
Sbjct: 115 MEYLESKNFVHRDLAARNCLVTENLVVKISDFGL 148

Length = 258

>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

 Score = 50.6 bits (122), Expect = 7e-09
 Identities = 15/32 (46%), Positives = 22/32 (68%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           Y H+  ILH+DLK +NI I ++  + + DFGL
Sbjct: 113 YCHSHRILHRDLKPQNILINRDGVLKLADFGL 144

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282

>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 50.1 bits (120), Expect = 9e-09
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL---FNFSKLYNSYTSNEKPSSP 53
           M YL ++  +H+DL ++NI +E  + V I+DFGL       K Y  Y   E   SP
Sbjct: 122 MDYLGSQRYIHRDLAARNILVESEDLVKISDFGLAKVLPEDKDY--YYVKEPGESP 175

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284

>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

 Score = 49.9 bits (120), Expect = 1e-08
 Identities = 15/32 (46%), Positives = 21/32 (65%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           YLH+  ILH+DLK  N+ I  +  + + DFGL
Sbjct: 117 YLHSNWILHRDLKPNNLLIASDGVLKLADFGL 148

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is also a component of the general transcription factor TFIIH, which phosphorylates the C-terminal domain (CTD) of RNA polymerase II when it is bound with unphosphorylated DNA, as present in the pre-initiation complex. Following phosphorylation, the CTD dissociates from the DNA which allows transcription initiation. Length = 298

>gnl|CDD|143371 cd07866, STKc_BUR1, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

 Score = 50.0 bits (120), Expect = 1e-08
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 5/60 (8%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEE 60
           + YLH   ILH+D+K+ NI I+    + I DFGL   ++ Y        P    G G  +
Sbjct: 128 INYLHENHILHRDIKAANILIDNQGILKIADFGL---ARPY--DGPPPNPKGGGGGGTRK 182

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic screen as factors involved in general transcription. The BUR1/BUR2 complex phosphorylates the C-terminal domain of RNA polymerase II. In addition, this complex regulates histone modification by phosporylating Rad6 and mediating the association of the Paf1 complex with chromatin. Length = 311

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 49.5 bits (119), Expect = 1e-08
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLG 55
           YLH+ GI+H+D+K  NI ++ +  V + DFG    +K      + E   S  G
Sbjct: 116 YLHSNGIVHRDIKGANILVDSDGVVKLADFGC---AKRLGDIETGEGTGSVRG 165

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 49.5 bits (119), Expect = 2e-08
 Identities = 14/34 (41%), Positives = 23/34 (67%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           M YL ++  +H+DL ++N  + +N  V I+DFGL
Sbjct: 115 MEYLESKNFIHRDLAARNCLVGENLVVKISDFGL 148

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

 Score = 49.5 bits (119), Expect = 2e-08
 Identities = 20/46 (43%), Positives = 33/46 (71%), Gaps = 3/46 (6%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNE 48
           YLH++GI+H+DLK +NI ++K+  + ITDFG    +K+ +  +S E
Sbjct: 117 YLHSKGIIHRDLKPENILLDKDMHIKITDFGT---AKVLDPNSSPE 159

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 49.1 bits (118), Expect = 2e-08
 Identities = 14/34 (41%), Positives = 23/34 (67%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           M YL ++  +H+DL ++N  + +N  V I+DFGL
Sbjct: 116 MEYLESKNFIHRDLAARNCLVGENLVVKISDFGL 149

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

 Score = 49.1 bits (118), Expect = 2e-08
 Identities = 15/32 (46%), Positives = 21/32 (65%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           YLH+  ++H+DLK  NI +  N  + I DFGL
Sbjct: 118 YLHSANVIHRDLKPSNILVNSNCDLKICDFGL 149

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPK kinase (MAP2K or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAP3K or MKKK). Each cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. There are three main typical MAPK subfamilies: Extracellular signal-Regulated Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38. Some MAPKs are atypical in that they are not regulated by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7. Length = 330

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score = 48.8 bits (117), Expect = 2e-08
 Identities = 18/33 (54%), Positives = 24/33 (72%), Gaps = 1/33 (3%)

Query: 3   YLHARGILHKDLKSKNIFI-EKNNKVVITDFGL 34
           YLH+ GI+H+DLK +NI +   N KV + DFGL
Sbjct: 107 YLHSNGIIHRDLKPENILLDSDNGKVKLADFGL 139

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score = 47.5 bits (114), Expect = 7e-08
 Identities = 16/32 (50%), Positives = 22/32 (68%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           YLH+ GILH+D+K  NI I  +  + + DFGL
Sbjct: 115 YLHSNGILHRDIKGSNILINNDGVLKLADFGL 146

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

>gnl|CDD|165473 PHA03207, PHA03207, serine/threonine kinase US3; Provisional

 Score = 47.5 bits (113), Expect = 9e-08
 Identities = 16/33 (48%), Positives = 26/33 (78%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFG 33
           + YLH RGI+H+D+K++NIF+++    V+ DFG
Sbjct: 198 LAYLHGRGIIHRDVKTENIFLDEPENAVLGDFG 230

Length = 392

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 46.9 bits (111), Expect = 2e-07
 Identities = 21/35 (60%), Positives = 29/35 (82%)

Query: 55  GEGKEEEEEKEEEGEEEDNEKEEKEKKEEEEEEEE 89
            +G + EEE+EEE EEE+ E+EE+E++EEEEE EE
Sbjct: 858 SDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENEE 892

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

 Score = 46.1 bits (110), Expect = 2e-07
 Identities = 18/32 (56%), Positives = 24/32 (75%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           YLH+ GI+H+DLK  NI I+ N  + +TDFGL
Sbjct: 108 YLHSNGIIHRDLKPDNILIDSNGHLKLTDFGL 139

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert relative to other kinases. The fungal kinases in this subfamily harbor other domains in addition to a central catalytic domain, which also contains an insert relative to MAST kinases like MASTL. Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. The fungal proteins Rim15 and cek1 are involved in the regulation of meiosis and mitosis, respectively. Length = 265

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score = 45.6 bits (109), Expect = 3e-07
 Identities = 15/54 (27%), Positives = 27/54 (50%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPL 54
           M YL ++  +H+DL ++N  + ++  V I+DFGL       + Y        P+
Sbjct: 118 MEYLASKKFVHRDLAARNCLVGEDLVVKISDFGLSRDVYDDDYYRKKTGGKLPI 171

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|215036 PLN00034, PLN00034, mitogen-activated protein kinase kinase; Provisional

 Score = 45.2 bits (107), Expect = 5e-07
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 16/71 (22%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYN-------------SYTSN 47
           + YLH R I+H+D+K  N+ I     V I DFG+   S++               +Y S 
Sbjct: 181 IAYLHRRHIVHRDIKPSNLLINSAKNVKIADFGV---SRILAQTMDPCNSSVGTIAYMSP 237

Query: 48  EKPSSPLGEGK 58
           E+ ++ L  G 
Sbjct: 238 ERINTDLNHGA 248

Length = 353

>gnl|CDD|133172 cd05040, PTKc_Ack_like, Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

 Score = 45.1 bits (107), Expect = 6e-07
 Identities = 15/34 (44%), Positives = 24/34 (70%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           M YL ++  +H+DL ++NI +  ++KV I DFGL
Sbjct: 110 MRYLESKRFIHRDLAARNILLASDDKVKIGDFGL 143

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with androgen-independent prostate cancer progression. Tnk1 regulates TNFalpha signaling and may play an important role in cell death. Length = 257

>gnl|CDD|173739 cd07838, STKc_CDK4_6_like, Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

 Score = 44.6 bits (106), Expect = 9e-07
 Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 3/44 (6%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTS 46
           +LH+  I+H+DLK +NI +  + +V I DFGL   +++Y+   +
Sbjct: 122 FLHSHRIVHRDLKPQNILVTSDGQVKIADFGL---ARIYSFEMA 162

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both expressed ubiquitously, associate with all three D cyclins (D1, D2 and D3), and phosphorylate the retinoblastoma (pRb) protein. They are also regulated by the INK4 family of inhibitors which associate with either the CDK alone or the CDK/cyclin complex. CDK4 and CDK6 show differences in subcellular localization, sensitivity to some inhibitors, timing in activation, tumor selectivity, and possibly substrate profiles. Although CDK4 and CDK6 seem to show some redundancy, they also have discrete, nonoverlapping functions. CDK6 plays an important role in cell differentiation. Length = 287

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score = 44.5 bits (106), Expect = 1e-06
 Identities = 14/31 (45%), Positives = 23/31 (74%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFG 33
           YLH++ ++H+D+KS NI + K+  V + DFG
Sbjct: 131 YLHSQNVIHRDIKSDNILLSKDGSVKLADFG 161

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|173761 cd08221, STKc_Nek9, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

 Score = 44.4 bits (105), Expect = 1e-06
 Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 3/44 (6%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTS 46
           Y+H  GILH+D+K+ NIF+ K   + + DFG+   SK+  S  S
Sbjct: 116 YIHKAGILHRDIKTLNIFLTKAGLIKLGDFGI---SKILGSEYS 156

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associates with FACT (FAcilitates Chromatin Transcription) and modulates interphase progression. It also interacts with Nek6, and Nek7, during mitosis, resulting in their activation. Length = 256

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 43.8 bits (104), Expect = 1e-06
 Identities = 14/32 (43%), Positives = 23/32 (71%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           YLH +G++H+D+K+ NI   K+  V + DFG+
Sbjct: 114 YLHEQGVIHRDIKAANILTTKDGVVKLADFGV 145

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|173748 cd07853, STKc_NLK, Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

 Score = 44.0 bits (104), Expect = 1e-06
 Identities = 16/32 (50%), Positives = 22/32 (68%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           YLH+ GILH+D+K  N+ +  N  + I DFGL
Sbjct: 118 YLHSAGILHRDIKPGNLLVNSNCVLKICDFGL 149

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription factors from the TCF/LEF family, inhibiting their ability to activate the transcription of target genes. In prostate cancer cells, NLK is involved in regulating androgen receptor-mediated transcription and its expression is altered during cancer progression. Length = 372

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 43.8 bits (103), Expect = 2e-06
 Identities = 21/38 (55%), Positives = 29/38 (76%)

Query: 55  GEGKEEEEEKEEEGEEEDNEKEEKEKKEEEEEEEEEEK 92
           G G  +  + EEE EEE+ E+EE+E++EEEEEEEEE +
Sbjct: 854 GGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENE 891

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|173702 cd05611, STKc_Rim15_like, Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

 Score = 44.0 bits (104), Expect = 2e-06
 Identities = 15/34 (44%), Positives = 25/34 (73%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           +  LH RGI+H+D+K +N+ I++   + +TDFGL
Sbjct: 110 VEDLHQRGIIHRDIKPENLLIDQTGHLKLTDFGL 143

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a downstream effector of PKA and regulates entry into stationary phase (G0). Thus, it plays a crucial role in regulating yeast proliferation, differentiation, and aging. Cek1 may facilitate progression of mitotic anaphase. Length = 260

>gnl|CDD|173762 cd08222, STKc_Nek11, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

 Score = 43.8 bits (103), Expect = 2e-06
 Identities = 20/35 (57%), Positives = 26/35 (74%), Gaps = 1/35 (2%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNF 37
           Y+H R ILH+DLK+KNIF+ KNN + I DFG+   
Sbjct: 121 YMHQRRILHRDLKAKNIFL-KNNLLKIGDFGVSRL 154

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M checkpoint. Nek11 may also play a role in the S-phase checkpoint as well as in DNA replication and genotoxic stress responses. Length = 260

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 43.6 bits (103), Expect = 2e-06
 Identities = 14/32 (43%), Positives = 21/32 (65%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           YLH R  +H+D+K  NI ++ N  V + DFG+
Sbjct: 117 YLHDRNTVHRDIKGANILVDTNGVVKLADFGM 148

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|177557 PHA03209, PHA03209, serine/threonine kinase US3; Provisional

 Score = 43.7 bits (103), Expect = 2e-06
 Identities = 17/37 (45%), Positives = 26/37 (70%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNF 37
           + YLHA+ I+H+D+K++NIFI   ++V I D G   F
Sbjct: 170 LRYLHAQRIIHRDVKTENIFINDVDQVCIGDLGAAQF 206

Length = 357

>gnl|CDD|173738 cd07835, STKc_CDK1_like, Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

 Score = 43.5 bits (103), Expect = 2e-06
 Identities = 13/34 (38%), Positives = 23/34 (67%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           + Y H+  +LH+DLK +N+ I++   + + DFGL
Sbjct: 112 IAYCHSHRVLHRDLKPQNLLIDREGALKLADFGL 145

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression while the CDK1/cyclin B complex is critical for G2 to M phase transition. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. Studies in knockout mice revealed that CDK1 can compensate for the loss of the cdk2 gene as it can also bind cyclin E and drive G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 283

>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

 Score = 43.4 bits (103), Expect = 2e-06
 Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 3/41 (7%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNS 43
           Y+HA GI+H+DLK  N+ I  +  + I DFGL   ++L++ 
Sbjct: 114 YMHANGIMHRDLKPANLLISADGVLKIADFGL---ARLFSE 151

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of heart failure. Length = 286

>gnl|CDD|173694 cd05603, STKc_SGK2, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

 Score = 43.4 bits (102), Expect = 2e-06
 Identities = 17/34 (50%), Positives = 26/34 (76%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           +GYLH+  I+++DLK +NI ++    VV+TDFGL
Sbjct: 109 IGYLHSLNIIYRDLKPENILLDSQGHVVLTDFGL 142

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1. Length = 321

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score = 43.1 bits (102), Expect = 3e-06
 Identities = 15/31 (48%), Positives = 23/31 (74%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFG 33
           YLH+ GI+H+D+K  NIF++ N  + + DFG
Sbjct: 114 YLHSHGIVHRDIKPANIFLDHNGVIKLGDFG 144

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family Serine/Threonine Kinases

 Score = 43.1 bits (102), Expect = 3e-06
 Identities = 14/32 (43%), Positives = 21/32 (65%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           + H+ GILH+DLK +N+ I     + + DFGL
Sbjct: 113 FCHSHGILHRDLKPENLLINTEGVLKLADFGL 144

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Length = 283

>gnl|CDD|132979 cd06648, STKc_PAK_II, Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

 Score = 42.8 bits (101), Expect = 3e-06
 Identities = 13/31 (41%), Positives = 25/31 (80%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFG 33
           +LHA+G++H+D+KS +I +  + +V ++DFG
Sbjct: 130 FLHAQGVIHRDIKSDSILLTSDGRVKLSDFG 160

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs found in group I PAKs, such as an AID (autoinhibitory domain) and SH3 binding sites. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. While group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX, no such binding has been demonstrated for group II PAKs. Some known substrates of group II PAKs are also substrates of group I PAKs such as Raf, BAD, LIMK and GEFH1. Unique group II substrates include MARK/Par-1 and PDZ-RhoGEF. Group II PAKs play important roles in filopodia formation, neuron extension, cytoskeletal organization, and cell survival. Length = 285

>gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

 Score = 42.8 bits (101), Expect = 3e-06
 Identities = 14/34 (41%), Positives = 23/34 (67%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           M YL  + ++H+DL ++N+ ++    V ITDFGL
Sbjct: 122 MSYLEEKRLVHRDLAARNVLVKTPQHVKITDFGL 155

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, resulting in the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Collectively, they can recognize a variety of ligands including EGF, TGFalpha, and neuregulins, among others. All four subfamily members can form homo- or heterodimers. HER3 contains an impaired kinase domain and depends on its heterodimerization partner for activation. EGFR subfamily members are involved in signaling pathways leading to a broad range of cellular responses including cell proliferation, differentiation, migration, growth inhibition, and apoptosis. Gain of function alterations, through their overexpression, deletions, or point mutations in their kinase domains, have been implicated in various cancers. These receptors are targets of many small molecule inhibitors and monoclonal antibodies used in cancer therapy. Length = 279

>gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

 Score = 42.9 bits (102), Expect = 3e-06
 Identities = 15/37 (40%), Positives = 26/37 (70%), Gaps = 3/37 (8%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK 39
           YLH+  I+++DLK +N+ ++ +  + ITDFG   F+K
Sbjct: 116 YLHSLDIVYRDLKPENLLLDSDGYIKITDFG---FAK 149

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubiquitously in cells and interacts with many different downstream targets. It plays a role in the regulation of diverse processes such as growth, development, memory, metabolism, gene expression, immunity, and lipolysis. Length = 290

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 42.7 bits (100), Expect = 4e-06
 Identities = 20/38 (52%), Positives = 29/38 (76%)

Query: 56  EGKEEEEEKEEEGEEEDNEKEEKEKKEEEEEEEEEEKN 93
           +G    +  + E EEE+ E+EE+E++EEEEEEEEEE+N
Sbjct: 853 DGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEEN 890

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

 Score = 42.9 bits (101), Expect = 4e-06
 Identities = 15/34 (44%), Positives = 24/34 (70%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           + YLH RGI+H+D+K  NI ++    + I+DFG+
Sbjct: 119 LNYLHNRGIIHRDIKGANILVDNKGGIKISDFGI 152

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Byr2 is regulated by Ras1. It responds to pheromone signaling and controls mating through the MAPK pathway. Budding yeast Ste11 functions in MAPK cascades that regulate mating, high osmolarity glycerol, and filamentous growth responses. Length = 267

>gnl|CDD|132960 cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

 Score = 42.9 bits (101), Expect = 4e-06
 Identities = 18/51 (35%), Positives = 33/51 (64%), Gaps = 2/51 (3%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPS 51
           + YLH++GILH+DLK+ N+ ++ +    I+DFG+   S   + Y +++  S
Sbjct: 121 LAYLHSKGILHRDLKADNLLVDADGICKISDFGISKKSD--DIYDNDQNMS 169

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell integrity MAPK pathway, which is activated by stresses and aggressions to the cell wall. The MAPKKK Bck1, MAPKKs Mkk1 and Mkk2, and the MAPK Slt2 make up the cascade that is important in the maintenance of cell wall homeostasis. Fission yeast Mkh1 is involved in MAPK cascades regulating cell morphology, cell wall integrity, salt resistance, and filamentous growth in response to stress. Length = 272

>gnl|CDD|173747 cd07852, STKc_MAPK15, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

 Score = 42.6 bits (101), Expect = 4e-06
 Identities = 13/32 (40%), Positives = 22/32 (68%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           Y+H+  ++H+DLK  NI +  + +V + DFGL
Sbjct: 122 YIHSGNVIHRDLKPSNILLNSDCRVKLADFGL 153

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimuli whereas ERK8 shows low basal activity and is activated by DNA-damaging agents. ERK7 and ERK8 also have different substrate profiles. Genome analysis shows that they are orthologs with similar gene structures. ERK7 and ERK 8 may be involved in the signaling of some nuclear receptor transcription factors. ERK7 regulates hormone-dependent degradation of estrogen receptor alpha while ERK8 down-regulates the transcriptional co-activation androgen and glucocorticoid receptors. Length = 337

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 42.6 bits (101), Expect = 4e-06
 Identities = 15/32 (46%), Positives = 24/32 (75%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           YLH+ GI+H+D+K+ NI +  + +V + DFGL
Sbjct: 113 YLHSNGIIHRDIKAANILLTSDGEVKLIDFGL 144

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases

 Score = 42.5 bits (101), Expect = 4e-06
 Identities = 15/33 (45%), Positives = 25/33 (75%)

Query: 2   GYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
            YLH+ GI+++DLK +NI ++ +  + +TDFGL
Sbjct: 107 EYLHSLGIIYRDLKPENILLDADGHIKLTDFGL 139

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250

>gnl|CDD|143361 cd07856, STKc_Sty1_Hog1, Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

 Score = 42.1 bits (99), Expect = 6e-06
 Identities = 16/32 (50%), Positives = 23/32 (71%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           Y+H+ G++H+DLK  NI I +N  + I DFGL
Sbjct: 123 YVHSAGVVHRDLKPSNILINENCDLKICDFGL 154

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and UV radiation. Sty1 is regulated by the MAP2K Wis1, which is activated by the MAP3Ks Wis4 and Win1, which receive signals of the stress condition from membrane-spanning histidine kinases Mak1-3. Activated Sty1 stabilizes the Atf1 transcription factor and induces transcription of Atf1-dependent genes of the core environmetal stress response (CESR). Hog1 is the key element in the high osmolarity glycerol (HOG) pathway and is activated upon hyperosmotic stress. Activated Hog1 accumulates in the nucleus and regulates stress-induced transcription. The HOG pathway is mediated by two transmembrane osmosensors, Sln1 and Sho1. Length = 328

>gnl|CDD|173675 cd05584, STKc_p70S6K, Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

 Score = 42.1 bits (99), Expect = 6e-06
 Identities = 15/34 (44%), Positives = 25/34 (73%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           + +LH +GI+++DLK +NI ++    V +TDFGL
Sbjct: 113 LEHLHQQGIIYRDLKPENILLDAQGHVKLTDFGL 146

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the insulin receptor substrate IRS-1, among others. Mammals contain two isoforms of p70S6K, named S6K1 and S6K2 (or S6K-beta). Length = 323

>gnl|CDD|173759 cd08219, STKc_Nek3, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

 Score = 41.9 bits (98), Expect = 7e-06
 Identities = 16/31 (51%), Positives = 25/31 (80%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFG 33
           ++H + +LH+D+KSKNIF+ +N KV + DFG
Sbjct: 115 HIHEKRVLHRDIKSKNIFLTQNGKVKLGDFG 145

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activation of Vav2 and contributes to prolactin-mediated motility of breast cancer cells. Length = 255

>gnl|CDD|143342 cd07837, STKc_CdkB_plant, Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

 Score = 42.1 bits (99), Expect = 7e-06
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 2/47 (4%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKN-NKVVITDFGL-FNFSKLYNSYT 45
           + + H  G++H+DLK +N+ ++K    + I D GL   FS    SYT
Sbjct: 123 VAHCHKHGVMHRDLKPQNLLVDKQKGLLKIADLGLGRAFSIPVKSYT 169

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developmental pathways, such as stomata and leaf development. CdkB has been shown to associate with both cyclin B, which controls G2/M transition, and cyclin D, which acts as a mediator in linking extracellular signals to the cell cycle. Length = 295

>gnl|CDD|143344 cd07839, STKc_CDK5, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

 Score = 42.0 bits (99), Expect = 8e-06
 Identities = 14/34 (41%), Positives = 24/34 (70%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           + + H+  +LH+DLK +N+ I KN ++ + DFGL
Sbjct: 112 LAFCHSHNVLHRDLKPQNLLINKNGELKLADFGL 145

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also important in synaptic plasticity and learning. CDK5 also participates in protecting against cell death and promoting angiogenesis. Impaired CDK5 activity is implicated in Alzheimer's disease, amyotrophic lateral sclerosis, Parkinson's disease, Huntington's disease and acute neuronal injury. Length = 284

>gnl|CDD|173666 cd05575, STKc_SGK, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

 Score = 41.7 bits (98), Expect = 8e-06
 Identities = 17/34 (50%), Positives = 26/34 (76%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           +GYLH+  I+++DLK +NI ++    VV+TDFGL
Sbjct: 109 LGYLHSLNIIYRDLKPENILLDSQGHVVLTDFGL 142

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell proliferation, and apoptosis. Length = 323

>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

 Score = 41.7 bits (98), Expect = 9e-06
 Identities = 14/34 (41%), Positives = 25/34 (73%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           + +LH++ ILH+D+KS N+F++  + V I D G+
Sbjct: 114 LAHLHSKKILHRDIKSLNLFLDAYDNVKIGDLGV 147

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cycle progression. No cellular function has yet been ascribed to CNK4. Length = 256

>gnl|CDD|223009 PHA03211, PHA03211, serine/threonine kinase US3; Provisional

 Score = 41.8 bits (98), Expect = 1e-05
 Identities = 12/37 (32%), Positives = 24/37 (64%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK 39
           Y+H  GI+H+D+K++N+ +     + + DFG   F++
Sbjct: 275 YIHGEGIIHRDIKTENVLVNGPEDICLGDFGAACFAR 311

Length = 461

>gnl|CDD|143364 cd07859, STKc_TDY_MAPK_plant, Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

 Score = 41.3 bits (97), Expect = 1e-05
 Identities = 15/32 (46%), Positives = 20/32 (62%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           Y+H   + H+DLK KNI    + K+ I DFGL
Sbjct: 118 YIHTANVFHRDLKPKNILANADCKLKICDFGL 149

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activation loop, TEY and TDY. Arabidopsis thaliana contains more TEY-type MAPKs than TDY-type, whereas the reverse is true for Oryza sativa. This subfamily represents the TDY subtype and is composed of Group D plant MAPKs including Arabidopsis thaliana MPK18 (AtMPK18), Oryza sativa Blast- and Wound-induced MAPK1 (OsBWMK1), OsWJUMK1 (Wound- and JA-Uninducible MAPK1), Zea mays MPK6, and the Medicago sativa TDY1 gene product. OsBWMK1 enhances resistance to pathogenic infections. It mediates stress-activated defense responses by activating a transcription factor that affects the expression of stress-related genes. AtMPK18 is involved in microtubule-related functions. Length = 338

>gnl|CDD|173674 cd05583, STKc_MSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

 Score = 41.3 bits (97), Expect = 1e-05
 Identities = 15/31 (48%), Positives = 23/31 (74%)

Query: 4   LHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           LH  GI+++D+K +NI ++    VV+TDFGL
Sbjct: 121 LHQLGIIYRDIKLENILLDSEGHVVLTDFGL 151

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines. This triggers phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) in the C-terminal extension of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSKs are predominantly nuclear proteins. They are widely expressed in many tissues including heart, brain, lung, liver, kidney, and pancreas. There are two isoforms of MSK, called MSK1 and MSK2. Length = 288

>gnl|CDD|165478 PHA03212, PHA03212, serine/threonine kinase US3; Provisional

 Score = 41.1 bits (96), Expect = 1e-05
 Identities = 15/31 (48%), Positives = 21/31 (67%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFG 33
           YLH   I+H+D+K++NIFI     V + DFG
Sbjct: 197 YLHENRIIHRDIKAENIFINHPGDVCLGDFG 227

Length = 391

>gnl|CDD|183880 PRK13184, pknD, serine/threonine-protein kinase; Reviewed

 Score = 41.3 bits (97), Expect = 2e-05
 Identities = 15/32 (46%), Positives = 23/32 (71%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           Y+H++G+LH+DLK  NI +    +VVI D+G 
Sbjct: 128 YVHSKGVLHRDLKPDNILLGLFGEVVILDWGA 159

Length = 932

>gnl|CDD|173693 cd05602, STKc_SGK1, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

 Score = 40.8 bits (95), Expect = 2e-05
 Identities = 19/46 (41%), Positives = 31/46 (67%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTS 46
           +GYLH+  I+++DLK +NI ++    +V+TDFGL   +  +N  TS
Sbjct: 109 LGYLHSLNIVYRDLKPENILLDSQGHIVLTDFGLCKENIEHNGTTS 154

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt sensitivity, memory consolidation, and cardiac repolarization. A common SGK1 variant is associated with increased blood pressure and body weight. SGK1 may also contribute to tumor growth, neurodegeneration, fibrosing disease, and ischemia. Length = 325

>gnl|CDD|173665 cd05574, STKc_phototropin_like, Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

 Score = 40.7 bits (96), Expect = 2e-05
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 8/51 (15%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSP 53
           YLH  GI+++DLK +NI + ++  ++++DF L        S  S+ +P   
Sbjct: 118 YLHLLGIVYRDLKPENILLHESGHIMLSDFDL--------SKQSDVEPPPV 160

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-terminal photosensory domain and a C-terminal catalytic domain. The N-terminal domain contains two LOV (Light, Oxygen or Voltage) domains that binds FMN. Photoexcitation of the LOV domains results in autophosphorylation at multiple sites and activation of the catalytic domain. Neurospora crassa nrc-2 plays a role in growth and development by controlling entry into the conidiation program. Length = 316

>gnl|CDD|173754 cd07865, STKc_CDK9, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

 Score = 40.8 bits (96), Expect = 2e-05
 Identities = 15/32 (46%), Positives = 22/32 (68%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           Y+H   ILH+D+K+ NI I K+  + + DFGL
Sbjct: 134 YIHRNKILHRDMKAANILITKDGILKLADFGL 165

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multiple steps of gene expression including transcription elongation, mRNA synthesis, processing, export, and translation. It also plays a role in mediating cytokine induced transcription networks such as IL6-induced STAT3 signaling. In addition, the CDK9/cyclin T2a complex promotes muscle differentiation and enhances the function of some myogenic regulatory factors. Length = 310

>gnl|CDD|132991 cd06917, STKc_NAK1_like, Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

 Score = 40.5 bits (95), Expect = 2e-05
 Identities = 12/32 (37%), Positives = 21/32 (65%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           Y+H  G++H+D+K+ NI +     V + DFG+
Sbjct: 116 YIHKVGVIHRDIKAANILVTNTGNVKLCDFGV 147

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of centrin, and phosphorylates substrates in a Cdc31p-dependent manner. Length = 277

>gnl|CDD|173695 cd05604, STKc_SGK3, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

 Score = 40.4 bits (94), Expect = 3e-05
 Identities = 17/34 (50%), Positives = 26/34 (76%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           +GYLH+  I+++DLK +NI ++    VV+TDFGL
Sbjct: 109 LGYLHSINIVYRDLKPENILLDSQGHVVLTDFGL 142

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels, and receptors. It plays a critical role in hair follicle morphogenesis and hair cycling. Length = 325

>gnl|CDD|133175 cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

 Score = 40.5 bits (95), Expect = 3e-05
 Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 2/50 (4%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFN--FSKLYNSYTSNE 48
           M YLH RG++HKD+ ++N  I++  +V ITD  L    F   Y+    NE
Sbjct: 130 MSYLHKRGVIHKDIAARNCVIDEELQVKITDNALSRDLFPMDYHCLGDNE 179

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It acts as a chemorepulsive axon guidance receptor of Wnt glycoproteins and is responsible for the establishment of axon tracts during the development of the central nervous system. In addition, studies in mice reveal that Ryk is essential in skeletal, craniofacial, and cardiac development. Thus, it appears Ryk is involved in signal transduction despite its lack of kinase activity. Ryk may function as an accessory protein that modulates the signals coming from catalytically active partner RTKs such as the Eph receptors. Length = 280

>gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

 Score = 40.4 bits (95), Expect = 3e-05
 Identities = 15/32 (46%), Positives = 24/32 (75%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           YLH++GI+H+D+K  NI +++   V ITDF +
Sbjct: 115 YLHSKGIIHRDIKPDNILLDEQGHVHITDFNI 146

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. Length = 258

>gnl|CDD|173746 cd07850, STKc_JNK, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

 Score = 40.5 bits (95), Expect = 3e-05
 Identities = 15/32 (46%), Positives = 23/32 (71%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           +LH+ GI+H+DLK  NI ++ +  + I DFGL
Sbjct: 133 HLHSAGIIHRDLKPSNIVVKSDCTLKILDFGL 164

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3) that are alternatively spliced to produce at least 10 isoforms. JNKs are specifically activated by the MAPK kinases MKK4 and MKK7, which are in turn activated by upstream MAPK kinase kinases as a result of different stimuli including stresses such as ultraviolet (UV) irradiation, hyperosmolarity, heat shock, or cytokines. JNKs activate a large number of different substrates based on specific stimulus, cell type, and cellular condition, and may be implicated in seemingly contradictory functions. Length = 353

>gnl|CDD|173749 cd07855, STKc_ERK5, Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

 Score = 40.4 bits (95), Expect = 3e-05
 Identities = 11/32 (34%), Positives = 23/32 (71%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           Y+H+  ++H+DLK  N+ + ++ ++ I DFG+
Sbjct: 122 YIHSANVIHRDLKPSNLLVNEDCELRIGDFGM 153

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the MAP2K MEK5, which in turn is regulated by the MAP3Ks MEKK2 and MEKK3. Activated ERK5 phosphorylates its targets including myocyte enhancer factor 2 (MEF2), Sap1a, c-Myc, and RSK. It plays a role in EGF-induced cell proliferation during the G1/S phase transition. Studies on knockout mice revealed that ERK5 is essential for cardiovascular development and plays an important role in angiogenesis. It is also critical for neural differentiation and survival. The ERK5 pathway has been implicated in the pathogenesis of many diseases including cancer, cardiac hypertrophy, and atherosclerosis. Length = 334

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 40.0 bits (93), Expect = 4e-05
 Identities = 20/43 (46%), Positives = 31/43 (72%), Gaps = 5/43 (11%)

Query: 55  GEGKEEEEEKEEE-----GEEEDNEKEEKEKKEEEEEEEEEEK 92
           GE K++E+  +       G+ E+ E+EE+E++EEEEEEEEEE+
Sbjct: 843 GEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEE 885

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|143356 cd07851, STKc_p38, Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

 Score = 40.0 bits (94), Expect = 4e-05
 Identities = 15/32 (46%), Positives = 24/32 (75%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           Y+H+ GI+H+DLK  NI + ++ ++ I DFGL
Sbjct: 133 YIHSAGIIHRDLKPSNIAVNEDCELKILDFGL 164

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. p38 substrates include other protein kinases and factors that regulate transcription, nuclear export, mRNA stability and translation. p38 kinases are drug targets for the inflammatory diseases psoriasis, rheumatoid arthritis, and chronic pulmonary disease. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta, which show varying substrate specificity and expression patterns. p38alpha and p38beta are ubiquitously expressed, p38gamma is predominantly found in skeletal muscle, and p38delta is found in the heart, lung, testis, pancreas, and small intestine. Length = 343

>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

 Score = 40.1 bits (94), Expect = 4e-05
 Identities = 16/31 (51%), Positives = 21/31 (67%)

Query: 4   LHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           LH + ILH+DLKS NI +  N+ V I D G+
Sbjct: 119 LHEQKILHRDLKSANILLVANDLVKIGDLGI 149

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, and it regulates cell size, through influencing the size threshold at which cells commit to mitosis. Length = 256

>gnl|CDD|173770 cd08528, STKc_Nek10, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

 Score = 39.8 bits (93), Expect = 4e-05
 Identities = 17/33 (51%), Positives = 24/33 (72%), Gaps = 1/33 (3%)

Query: 3   YLHA-RGILHKDLKSKNIFIEKNNKVVITDFGL 34
           YLH  + I+H+DL   NI + +++KV ITDFGL
Sbjct: 128 YLHKEKRIVHRDLTPNNIMLGEDDKVTITDFGL 160

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24. Length = 269

>gnl|CDD|132977 cd06646, STKc_MAP4K5, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

 Score = 40.0 bits (93), Expect = 4e-05
 Identities = 14/34 (41%), Positives = 23/34 (67%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           + YLH++G +H+D+K  NI +  N  V + DFG+
Sbjct: 119 LAYLHSKGKMHRDIKGANILLTDNGDVKLADFGV 152

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). MAP4K5 also facilitates Wnt signaling in B cells, and may therefore be implicated in the control of cell fate, proliferation, and polarity. Length = 267

>gnl|CDD|217503 pfam03344, Daxx, Daxx Family

 Score = 39.9 bits (93), Expect = 4e-05
 Identities = 28/49 (57%), Positives = 35/49 (71%)

Query: 43  SYTSNEKPSSPLGEGKEEEEEKEEEGEEEDNEKEEKEKKEEEEEEEEEE 91
           S TS E PS    E +EEE  +EEE EEE+ E+EE+E +EEE E+EEEE
Sbjct: 425 SSTSGESPSMASQESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEE 473

The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis, but precise role played by Daxx remains to be determined. Daxx forms a complex with Axin. Length = 715

>gnl|CDD|173663 cd05572, STKc_cGK_PKG, Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

 Score = 39.9 bits (94), Expect = 4e-05
 Identities = 17/37 (45%), Positives = 26/37 (70%), Gaps = 3/37 (8%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK 39
           YLH RGI+++DLK +N+ ++ N  V + DFG   F+K
Sbjct: 108 YLHNRGIIYRDLKPENLLLDSNGYVKLVDFG---FAK 141

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowing autophosphorylation and activation of the kinase. cGKI is a soluble protein expressed in all smooth muscles, platelets, cerebellum, and kidney. It is also expressed at lower concentrations in other tissues. cGKII is a membrane-bound protein that is most abundantly expressed in the intestine. It is also present in the brain nuclei, adrenal cortex, kidney, lung, and prostate. cGKI is involved in the regulation of smooth muscle tone, smooth cell proliferation, and platelet activation. cGKII plays a role in the regulation of secretion, such as renin secretion by the kidney and aldosterone secretion by the adrenal. It also regulates bone growth and the circadian rhythm. Length = 262

>gnl|CDD|173700 cd05609, STKc_MAST, Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

 Score = 39.8 bits (93), Expect = 4e-05
 Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 10/64 (15%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKL-YNSYTSNEKPSSPLGEGKEEE 61
           YLH  GI+H+DLK  N+ I     + +TDFGL   SK+   S T+N      L EG  E+
Sbjct: 116 YLHNYGIVHRDLKPDNLLITSMGHIKLTDFGL---SKIGLMSLTTN------LYEGHIEK 166

Query: 62  EEKE 65
           + +E
Sbjct: 167 DTRE 170

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. MAST1, MAST2, and MAST3 bind and phosphorylate the tumor suppressor PTEN, and may contribute to the regulation and stabilization of PTEN. MAST2 is involved in the regulation of the Fc-gamma receptor of the innate immune response in macrophages, and may also be involved in the regulation of the Na+/H+ exchanger NHE3. Length = 305

>gnl|CDD|143363 cd07858, STKc_TEY_MAPK_plant, Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

 Score = 39.7 bits (93), Expect = 4e-05
 Identities = 14/32 (43%), Positives = 21/32 (65%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           Y+H+  +LH+DLK  N+ +  N  + I DFGL
Sbjct: 123 YIHSANVLHRDLKPSNLLLNANCDLKICDFGL 154

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activation loop, TEY and TDY. This subfamily represents the TEY subtype and is further subdivided into three groups (A, B, and C). Group A is represented by AtMPK3, AtMPK6, Nicotiana tabacum BTF4 (NtNTF4), among others. They are mostly involved in environmental and hormonal responses. AtMPK3 and AtMPK6 are also key regulators for stomatal development and patterning. Group B is represented by AtMPK4, AtMPK13, and NtNTF6, among others. They may be involved in both cell division and environmental stress response. AtMPK4 also participates in regulating innate immunity. Group C is represented by AtMPK1, AtMPK2, NtNTF3, Oryza sativa MAPK4 (OsMAPK4), among others. They may also be involved in stress responses. AtMPK1 and AtMPK2 are activated following mechanical injury and in the presence of stress chemicals such as jasmonic acid, hydrogen peroxide and abscisic acid. OsMAPK4 is also called OsMSRMK3 for Multiple Stress-Responsive MAPK3. Length = 337

>gnl|CDD|143368 cd07863, STKc_CDK4, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

 Score = 39.6 bits (92), Expect = 5e-05
 Identities = 15/34 (44%), Positives = 23/34 (67%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           + +LHA  I+H+DLK +NI +    +V + DFGL
Sbjct: 121 LDFLHANCIVHRDLKPENILVTSGGQVKLADFGL 154

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the nucleus. CDK4 also shows kinase activity towards Smad3, a signal transducer of transforming growth factor (TGF)-beta signaling which modulates transcription and plays a role in cell proliferation and apoptosis. CDK4 is inhibited by the p21 inhibitor and is specifically mutated in human melanoma. Length = 288

>gnl|CDD|132990 cd06659, STKc_PAK6, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

 Score = 39.6 bits (92), Expect = 5e-05
 Identities = 13/34 (38%), Positives = 26/34 (76%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           + YLH++G++H+D+KS +I +  + +V ++DFG 
Sbjct: 130 LCYLHSQGVIHRDIKSDSILLTLDGRVKLSDFGF 163

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role in stress responses through its activation by the mitogen-activated protein kinase (MAPK) p38 and MAPK kinase 6 (MKK6) pathway. PAK6 is highly expressed in the brain. It is not required for viability, but together with PAK5, it is required for normal levels of locomotion and activity, and for learning and memory. Increased expression of PAK6 is found in primary and metastatic prostate cancer. PAK6 may play a role in the regulation of motility. Length = 297

>gnl|CDD|173662 cd05571, STKc_PKB, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

 Score = 39.8 bits (93), Expect = 5e-05
 Identities = 15/34 (44%), Positives = 27/34 (79%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           +GYLH+  ++++DLK +N+ ++K+  + ITDFGL
Sbjct: 108 LGYLHSCDVVYRDLKLENLMLDKDGHIKITDFGL 141

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having been implicated in tumor initiation, progression, and metastasis. Length = 323

>gnl|CDD|173701 cd05610, STKc_MASTL, Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

 Score = 39.9 bits (93), Expect = 5e-05
 Identities = 16/32 (50%), Positives = 21/32 (65%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           YLH  GI+H+DLK  N+ I     + +TDFGL
Sbjct: 119 YLHRHGIIHRDLKPDNMLISNEGHIKLTDFGL 150

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ14813 is associated with autosomal dominant thrombocytopenia. To date, the function of MASTL is unknown. Length = 669

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 39.7 bits (91), Expect = 5e-05
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 3   YLHARGILHKDLKSKNIFIEKN-NKVVITDFGLFNFSKLYNSYTSNEKPSSPL 54
           YLH++GI+H+D+K +NI ++++   V + DFGL        S +S     S  
Sbjct: 116 YLHSKGIIHRDIKPENILLDRDGRVVKLIDFGLAKLLPDPGSTSSIPALPSTS 168

Length = 384

>gnl|CDD|173740 cd07842, STKc_CDK8_like, Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

 Score = 39.6 bits (93), Expect = 5e-05
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 13/59 (22%)

Query: 3   YLHARGILHKDLKSKNIFI----EKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEG 57
           YLH+  +LH+DLK  NI +     +   V I D G    ++L+N+      P  PL + 
Sbjct: 123 YLHSNWVLHRDLKPANILVMGEGPERGVVKIGDLG---LARLFNA------PLKPLADL 172

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA polymerase II (RNAP II)-dependent transcription. CDC2L6 also associates with Mediator in complexes lacking CDK8. In VP16-dependent transcriptional activation, CDK8 and CDC2L6 exerts opposing effects by positive and negative regulation, respectively, in similar conditions. Length = 316

>gnl|CDD|173654 cd05108, PTKc_EGFR, Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

 Score = 39.6 bits (92), Expect = 6e-05
 Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 3/43 (6%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNS 43
           M YL  R ++H+DL ++N+ ++    V ITDFGL   +KL  +
Sbjct: 122 MNYLEERRLVHRDLAARNVLVKTPQHVKITDFGL---AKLLGA 161

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands for EGFR include EGF, heparin binding EGF-like growth factor (HBEGF), epiregulin, amphiregulin, TGFalpha, and betacellulin. Upon ligand binding, EGFR can form homo- or heterodimers with other EGFR subfamily members. The EGFR signaling pathway is one of the most important pathways regulating cell proliferation, differentiation, survival, and growth. Overexpression and mutation in the kinase domain of EGFR have been implicated in the development and progression of a variety of cancers. A number of monoclonal antibodies and small molecule inhibitors have been developed that target EGFR, including the antibodies Cetuximab and Panitumumab, which are used in combination with other therapies for the treatment of colorectal cancer and non-small cell lung carcinoma (NSCLC). The small molecule inhibitors Gefitinib (Iressa) and Erlotinib (Tarceva), already used for NSCLC, are undergoing clinical trials for other types of cancer including gastrointestinal, breast, head and neck, and bladder. Length = 316

>gnl|CDD|133167 cd05035, PTKc_Axl_like, Catalytic Domain of Axl-like Protein Tyrosine Kinases

 Score = 39.4 bits (92), Expect = 6e-05
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 2/42 (4%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYN 42
           M YL  R  +H+DL ++N  + ++  V + DFGL    K+Y+
Sbjct: 126 MEYLSNRNFIHRDLAARNCMLREDMTVCVADFGLSK--KIYS 165

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellular effects including survival, proliferation, migration, and phagocytosis. They are also associated with several types of cancer as well as inflammatory, autoimmune, vascular, and kidney diseases. Mer is named after its original reported expression pattern (monocytes, epithelial, and reproductive tissues). It is required for the ingestion of apoptotic cells by phagocytes such as macrophages, retinal pigment epithelial cells, and dendritic cells. Mer is also important in maintaining immune homeostasis. Length = 273

>gnl|CDD|173765 cd08225, STKc_Nek5, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

 Score = 39.2 bits (91), Expect = 6e-05
 Identities = 17/33 (51%), Positives = 25/33 (75%), Gaps = 1/33 (3%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVV-ITDFGL 34
           ++H R ILH+D+KS+NIF+ KN  V  + DFG+
Sbjct: 116 HIHDRKILHRDIKSQNIFLSKNGMVAKLGDFGI 148

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown. Length = 257

>gnl|CDD|173703 cd05612, STKc_PRKX_like, Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

 Score = 39.3 bits (92), Expect = 6e-05
 Identities = 14/33 (42%), Positives = 25/33 (75%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFG 33
           + YLH++ I+++DLK +NI ++K   + +TDFG
Sbjct: 114 LEYLHSKEIVYRDLKPENILLDKEGHIKLTDFG 146

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyte/macrophage lineage differentiation, renal cell epithelial migration, and tubular morphogenesis in the developing kidney. Length = 291

>gnl|CDD|240233 PTZ00024, PTZ00024, cyclin-dependent protein kinase; Provisional

 Score = 39.4 bits (92), Expect = 7e-05
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 4   LHARGILHKDLKSKNIFIEKNNKVVITDFGL---FNFSKLYNSYTSNEKPSS 52
           LH    +H+DL   NIFI       I DFGL   + +    ++ + +E    
Sbjct: 135 LHKWYFMHRDLSPANIFINSKGICKIADFGLARRYGYPPYSDTLSKDETMQR 186

Length = 335

>gnl|CDD|173752 cd07861, STKc_CDK1_euk, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

 Score = 39.3 bits (92), Expect = 7e-05
 Identities = 13/32 (40%), Positives = 22/32 (68%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           + H+R +LH+DLK +N+ I+    + + DFGL
Sbjct: 116 FCHSRRVLHRDLKPQNLLIDNKGVIKLADFGL 147

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression. CDK1/cyclin A2 has also been implicated as an important regulator of S phase events. The CDK1/cyclin B complex is critical for G2 to M phase transition. It induces mitosis by activating nuclear enzymes that regulate chromatin condensation, nuclear membrane degradation, mitosis-specific microtubule and cytoskeletal reorganization. CDK1 also associates with cyclin E and plays a role in the entry into S phase. CDK1 transcription is stable throughout the cell cycle but is modulated in some pathological conditions. It may play a role in regulating apoptosis under these conditions. In breast cancer cells, HER2 can mediate apoptosis by inactivating CDK1. Activation of CDK1 may contribute to HIV-1 induced apoptosis and neuronal apoptosis in neurodegenerative diseases. Length = 285

>gnl|CDD|143354 cd07849, STKc_ERK1_2_like, Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

 Score = 39.2 bits (92), Expect = 7e-05
 Identities = 14/32 (43%), Positives = 21/32 (65%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           Y+H+  +LH+DLK  N+ +  N  + I DFGL
Sbjct: 121 YIHSANVLHRDLKPSNLLLNTNCDLKICDFGL 152

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase kinase from the Raf family. ERK1/2 have numerous substrates, many of which are nuclear and participate in transcriptional regulation of many cellular processes. They regulate cell growth, cell proliferation, and cell cycle progression from G1 to S phase. Although the distinct roles of ERK1 and ERK2 have not been fully determined, it is known that ERK2 can maintain most functions in the absence of ERK1, and that the deletion of ERK2 is embryonically lethal. The MAPK, Fus3, regulates yeast mating processes including mating-specific gene expression, G1 arrest, mating projection, and cell fusion. Length = 336

>gnl|CDD|234975 PRK01723, PRK01723, 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

 Score = 39.1 bits (92), Expect = 7e-05
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 4   LHARGILHKDLKSKNIFIEKNNKVVITDF 32
            H  G+ H DL + NI ++ + K  + DF
Sbjct: 158 FHDAGVYHADLNAHNILLDPDGKFWLIDF 186

Length = 239

>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

 Score = 39.0 bits (91), Expect = 8e-05
 Identities = 13/35 (37%), Positives = 21/35 (60%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLF 35
           M YL +   +H+DL ++N  + +   V I+DFGL 
Sbjct: 137 MEYLSSHHFVHRDLAARNCLVGEGLTVKISDFGLS 171

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. They play important roles in bone and heart formation. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Drosophila Ror is expressed only in the developing nervous system during neurite outgrowth and neuronal differentiation, suggesting a role for Drosophila Ror in neural development. More recently, mouse Ror1 and Ror2 have also been found to play an important role in regulating neurite growth in central neurons. Ror1 and Ror2 are believed to have some overlapping and redundant functions. Length = 283

>gnl|CDD|133212 cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

 Score = 39.0 bits (91), Expect = 8e-05
 Identities = 16/34 (47%), Positives = 24/34 (70%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           M YL ++  +H+DL ++NI +E  N+V I DFGL
Sbjct: 121 MEYLGSKRYVHRDLATRNILVESENRVKIGDFGL 154

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak2 is widely expressed in many tissues while Jak3 is expressed only in hematopoietic cells. Jak2 is essential for the signaling of hormone-like cytokines such as growth hormone, erythropoietin, thrombopoietin, and prolactin, as well as some IFNs and cytokines that signal through the IL-3 and gp130 receptors. Jak3 binds the shared receptor subunit common gamma chain and thus, is essential in the signaling of cytokines that use it such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice results in an embryonic lethal phenotype with multiple defects including erythropoietic and cardiac abnormalities. It is the only Jak gene that results in a lethal phenotype when disrupted in mice. A mutation in the pseudokinase domain of Jak2, V617F, is present in many myeloproliferative diseases, including almost all patients with polycythemia vera, and 50% of patients with essential thrombocytosis and myelofibrosis. Jak3 is important in lymphoid development and myeloid cell differentiation. Inactivating mutations in Jak3 have been reported in humans with severe combined immunodeficiency (SCID). Length = 284

>gnl|CDD|178763 PLN03224, PLN03224, probable serine/threonine protein kinase; Provisional

 Score = 38.9 bits (90), Expect = 8e-05
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 7/58 (12%)

Query: 4   LHARGILHKDLKSKNIFIEKNNKVVITDFGL-------FNFSKLYNSYTSNEKPSSPL 54
           LH  GI+H+D+K +N+ +  + +V I DFG         NF+ LY        P   L
Sbjct: 325 LHRIGIVHRDIKPENLLVTVDGQVKIIDFGAAVDMCTGINFNPLYGMLDPRYSPPEEL 382

Length = 507

>gnl|CDD|240344 PTZ00283, PTZ00283, serine/threonine protein kinase; Provisional

 Score = 39.1 bits (91), Expect = 9e-05
 Identities = 17/46 (36%), Positives = 31/46 (67%), Gaps = 3/46 (6%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNE 48
           ++H++ ++H+D+KS NI +  N  V + DFG   FSK+Y +  S++
Sbjct: 158 HVHSKHMIHRDIKSANILLCSNGLVKLGDFG---FSKMYAATVSDD 200

Length = 496

>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

 Score = 38.8 bits (91), Expect = 9e-05
 Identities = 11/32 (34%), Positives = 21/32 (65%)

Query: 2   GYLHARGILHKDLKSKNIFIEKNNKVVITDFG 33
            Y H+  I+H+D+K +NI + ++  + + DFG
Sbjct: 114 AYCHSHNIIHRDIKPENILVSESGVLKLCDFG 145

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning and memory. Length = 288

>gnl|CDD|234389 TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclase fusion protein

 Score = 39.1 bits (91), Expect = 9e-05
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 7/39 (17%)

Query: 1   MGYLHARGILHKDLKSKNIFI-----EKNNKVVITDFGL 34
           +   H +GI+H+DLK +NI +       + KV+  DFG+
Sbjct: 92  LACAHNQGIVHRDLKPQNIMVSQTGVRPHAKVL--DFGI 128

This model represents proteins of 1350 in length, in multiple species of Burkholderia, in Acidovorax avenae subsp. citrulli AAC00-1 and Delftia acidovorans SPH-1, and in multiple copies in Sorangium cellulosum, in genomic neighborhoods that include a cyclodehydratase/docking scaffold fusion protein (TIGR03882) and a member of the thiazole/oxazole modified metabolite (TOMM) precursor family TIGR03795. It has a kinase domain in the N-terminal 300 amino acids, followed by a cyclase homology domain, followed by regions without named domain definitions. It is a probable bacteriocin-like metabolite biosynthesis protein [Cellular processes, Toxin production and resistance]. Length = 1266

>gnl|CDD|173689 cd05598, STKc_LATS, Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

 Score = 39.0 bits (91), Expect = 9e-05
 Identities = 13/32 (40%), Positives = 22/32 (68%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
            +H  G +H+D+K  NI I+++  + +TDFGL
Sbjct: 116 SVHKMGFIHRDIKPDNILIDRDGHIKLTDFGL 147

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Length = 376

>gnl|CDD|173758 cd08218, STKc_Nek1, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

 Score = 38.7 bits (90), Expect = 1e-04
 Identities = 15/34 (44%), Positives = 26/34 (76%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           + ++H R ILH+D+KS+NIF+ K+  + + DFG+
Sbjct: 114 LKHVHDRKILHRDIKSQNIFLTKDGTIKLGDFGI 147

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycystic kidney disease, which is characterized by benign polycystic tumors formed by abnormal overgrowth of renal epithelial cells. It appears also to be involved in DNA damage response, and may be important for both correct DNA damage checkpoint activation and DNA repair. Length = 256

>gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

 Score = 38.7 bits (90), Expect = 1e-04
 Identities = 14/34 (41%), Positives = 24/34 (70%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           M YLH++  +H+DL ++N+ ++ +  V I DFGL
Sbjct: 120 MAYLHSQHYIHRDLAARNVLLDNDRLVKIGDFGL 153

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Tyk2 is widely expressed in many tissues. It is involved in signaling via the cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell surface urokinase receptor (uPAR) signaling and plays a role in modulating vascular smooth muscle cell (VSMC) functional behavior in response to injury. Tyk2 is also important in dendritic cell function and T helper (Th)1 cell differentiation. A homozygous mutation of Tyk2 was found in a patient with hyper-IgE syndrome (HIES), a primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and elevated serum IgE. This suggests that Tyk2 may play important roles in multiple cytokine signaling involved in innate and adaptive immunity. Length = 283

>gnl|CDD|143374 cd07869, STKc_PFTAIRE1, Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

 Score = 38.5 bits (89), Expect = 1e-04
 Identities = 18/48 (37%), Positives = 28/48 (58%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNE 48
           + Y+H R ILH+DLK +N+ I    ++ + DFGL     + +   SNE
Sbjct: 116 LSYIHQRYILHRDLKPQNLLISDTGELKLADFGLARAKSVPSHTYSNE 163

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 and is inhibited by the p21 cell cycle inhibitor. It has also been shown to interact with the membrane-associated cyclin Y, which recruits the protein to the plasma membrane. Length = 303

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score = 38.7 bits (91), Expect = 1e-04
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 3   YLHA-RGILHKDLKSKNIFIEKNNKVVITDFG 33
           YLH  R I+H+D+K  N+ I    +V I DFG
Sbjct: 114 YLHTKRHIIHRDIKPSNLLINSKGEVKIADFG 145

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|132989 cd06658, STKc_PAK5, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

 Score = 38.5 bits (89), Expect = 1e-04
 Identities = 12/34 (35%), Positives = 25/34 (73%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           + YLH +G++H+D+KS +I +  + ++ ++DFG 
Sbjct: 131 LSYLHNQGVIHRDIKSDSILLTSDGRIKLSDFGF 164

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly expressed in the brain. It is not required for viability, but together with PAK6, it is required for normal levels of locomotion and activity, and for learning and memory. PAK5 cooperates with Inca (induced in neural crest by AP2) in the regulation of cell adhesion and cytoskeletal organization in the embryo and in neural crest cells during craniofacial development. PAK5 may also play a role in controlling the signaling of Raf-1, an effector of Ras, at the mitochondria. Length = 292

>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

 Score = 38.6 bits (90), Expect = 1e-04
 Identities = 14/34 (41%), Positives = 23/34 (67%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           M YL A+  +H+DL ++N+ + +NN   + DFGL
Sbjct: 116 MAYLEAQNYIHRDLAARNVLVGENNICKVADFGL 149

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Frk, also known as Rak, is specifically expressed in liver, lung, kidney, intestine, mammary glands, and the islets of Langerhans. Rodent homologs were previously referred to as GTK (gastrointestinal tyr kinase), BSK (beta-cell Src-like kinase), or IYK (intestinal tyr kinase). Studies in mice reveal that Frk is not essential for viability. It plays a role in the signaling that leads to cytokine-induced beta-cell death in Type I diabetes. It also regulates beta-cell number during embryogenesis and early in life. Length = 261

>gnl|CDD|133233 cd05102, PTKc_VEGFR3, Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

 Score = 38.4 bits (89), Expect = 1e-04
 Identities = 16/34 (47%), Positives = 24/34 (70%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           M +L +R  +H+DL ++NI + +NN V I DFGL
Sbjct: 187 MEFLASRKCIHRDLAARNILLSENNVVKICDFGL 220

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. VEGFR3 preferentially binds the ligands VEGFC and VEGFD. VEGFR3 is essential for lymphatic endothelial cell (EC) development and function. It has been shown to regulate adaptive immunity during corneal transplantation. VEGFR3 is upregulated on blood vascular ECs in pathological conditions such as vascular tumors and the periphery of solid tumors. It plays a role in cancer progression and lymph node metastasis. Missense mutations in the VEGFR3 gene are associated with primary human lymphedema. Length = 338

>gnl|CDD|173751 cd07860, STKc_CDK2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

 Score = 38.6 bits (90), Expect = 1e-04
 Identities = 12/34 (35%), Positives = 21/34 (61%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           + + H+  +LH+DLK +N+ I     + + DFGL
Sbjct: 113 LAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGL 146

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. CDK2, together with CDK4, also regulates embryonic cell proliferation. Despite these important roles, mice deleted for the cdk2 gene are viable and normal except for being sterile. This may be due to compensation provided by CDK1 (also called Cdc2), which can also bind cyclin E and drive the G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 284

>gnl|CDD|143376 cd07871, STKc_PCTAIRE3, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

 Score = 38.5 bits (89), Expect = 1e-04
 Identities = 18/48 (37%), Positives = 27/48 (56%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNE 48
           + Y H R ILH+DLK +N+ I +  ++ + DFGL     +     SNE
Sbjct: 116 LSYCHKRKILHRDLKPQNLLINEKGELKLADFGLARAKSVPTKTYSNE 163

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filaments (PHFs) and stimulate Tau phosphorylation. As AD progresses, phosphorylated Tau aggregates and forms PHFs, which leads to the formation of neurofibrillary tangles (NFTs). In human glioma cells, PCTAIRE-3 induces cell cycle arrest and cell death. Length = 288

>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein Tyrosine Kinases

 Score = 38.5 bits (90), Expect = 1e-04
 Identities = 15/34 (44%), Positives = 22/34 (64%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           M YL +R  +H+DL ++NI + +N    I DFGL
Sbjct: 116 MAYLESRNYIHRDLAARNILVGENLVCKIADFGL 149

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. Length = 261

>gnl|CDD|143375 cd07870, STKc_PFTAIRE2, Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

 Score = 38.4 bits (89), Expect = 1e-04
 Identities = 14/34 (41%), Positives = 23/34 (67%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           + Y+H + ILH+DLK +N+ I    ++ + DFGL
Sbjct: 116 LAYIHGQHILHRDLKPQNLLISYLGELKLADFGL 149

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recessive form of juvenile ALS. The function of PFTAIRE-2 is not yet known. Length = 291

>gnl|CDD|173673 cd05582, STKc_RSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

 Score = 38.2 bits (89), Expect = 2e-04
 Identities = 14/34 (41%), Positives = 26/34 (76%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           + +LH+ GI+++DLK +NI +++   + +TDFGL
Sbjct: 111 LDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGL 144

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylates all known RSK substrates. RSKs act as downstream effectors of mitogen-activated protein kinase (MAPK) and play key roles in mitogen-activated cell growth, differentiation, and survival. Mammals possess four RSK isoforms (RSK1-4) from distinct genes. RSK proteins are also referred to as MAP kinase-activated protein kinases (MAPKAPKs), p90-RSKs, or p90S6Ks. Length = 318

>gnl|CDD|173763 cd08223, STKc_Nek4, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

 Score = 38.0 bits (88), Expect = 2e-04
 Identities = 14/32 (43%), Positives = 24/32 (75%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           YLH + ILH+DLK++N+F+ + N + + D G+
Sbjct: 117 YLHEKHILHRDLKTQNVFLTRTNIIKVGDLGI 148

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown. Length = 257

>gnl|CDD|173753 cd07864, STKc_CDK12, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

 Score = 38.2 bits (89), Expect = 2e-04
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 3/43 (6%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNS 43
           + Y H +  LH+D+K  NI +    ++ + DFGL   ++LYNS
Sbjct: 129 LNYCHKKNFLHRDIKCSNILLNNKGQIKLADFGL---ARLYNS 168

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely expressed in tissues. It interacts with cyclins L1 and L2, and plays roles in regulating transcription and alternative splicing. Length = 302

>gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

 Score = 38.2 bits (89), Expect = 2e-04
 Identities = 14/31 (45%), Positives = 22/31 (70%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFG 33
           YLH+R I+H+D+K  NI + +  +V + DFG
Sbjct: 120 YLHSRKIIHRDIKPSNILLTRKGQVKLCDFG 150

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Pek1/Skh1 from Schizosaccharomyces pombe and MKK2 from Saccharomyces cerevisiae, and related proteins. Both fission yeast Pek1 and baker's yeast MKK2 are components of the cell integrity MAPK pathway. In fission yeast, Pek1 phosphorylates and activates the MAPK Pmk1/Spm1 and is regulated by the MAPKKK Mkh1. In baker's yeast, the pathway involves the MAPK Slt2, the MAPKKs MKK1 and MKK2, and the MAPKKK Bck1. The cell integrity MAPK cascade is activated by multiple stress conditions, and is essential in cell wall construction, morphogenesis, cytokinesis, and ion homeostasis. Length = 287

>gnl|CDD|173655 cd05110, PTKc_HER4, Catalytic domain of the Protein Tyrosine Kinase, HER4

 Score = 38.1 bits (88), Expect = 2e-04
 Identities = 16/34 (47%), Positives = 24/34 (70%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           M YL  R ++H+DL ++N+ ++  N V ITDFGL
Sbjct: 122 MMYLEERRLVHRDLAARNVLVKSPNHVKITDFGL 155

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands that bind HER4 fall into two groups, the neuregulins (or heregulins) and some EGFR (HER1) ligands including betacellulin, HBEGF, and epiregulin. All four neuregulins (NRG1-4) interact with HER4. Upon ligand binding, HER4 forms homo- or heterodimers with other HER proteins. HER4 is essential in embryonic development. It is implicated in mammary gland, cardiac, and neural development. As a postsynaptic receptor of NRG1, HER4 plays an important role in synaptic plasticity and maturation. The impairment of NRG1/HER4 signaling may contribute to schizophrenia. Length = 303

>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 14/31 (45%), Positives = 22/31 (70%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFG 33
           YLH+ G +H+D+K+ NI + ++  V I DFG
Sbjct: 117 YLHSNGQIHRDIKAGNILLGEDGSVKIADFG 147

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 and SPAK contain a conserved C-terminal (CCT) domain, which recognizes a unique motif ([RK]FX[VI]) present in their activating kinases (WNK1/WNK4) and their substrates. Length = 267

>gnl|CDD|143359 cd07854, STKc_MAPK4_6, Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

 Score = 37.8 bits (88), Expect = 2e-04
 Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 1/33 (3%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVV-ITDFGL 34
           Y+H+  +LH+DLK  N+FI   + V+ I DFGL
Sbjct: 129 YIHSANVLHRDLKPANVFINTEDLVLKIGDFGL 161

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progression in certain conditions. It may also play a role in glucose-induced insulin secretion. MAPK6 and MAPK4 cooperate to regulate the activity of MAPK-activated protein kinase 5 (MK5), leading to its relocation to the cytoplasm and exclusion from the nucleus. The MAPK6/MK5 and MAPK4/MK5 pathways may play critical roles in embryonic and post-natal development. Length = 342

>gnl|CDD|173704 cd05613, STKc_MSK1_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

 Score = 37.7 bits (87), Expect = 2e-04
 Identities = 16/32 (50%), Positives = 25/32 (78%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           +LH  GI+++D+K +NI ++ N  VV+TDFGL
Sbjct: 120 HLHKLGIIYRDIKLENILLDSNGHVVLTDFGL 151

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSK1 plays a role in the regulation of translational control and transcriptional activation. It phosphorylates the transcription factors, CREB and NFkappaB. It also phosphorylates the nucleosomal proteins H3 and HMG-14. Increased phosphorylation of MEK1 is associated with the development of cerebral ischemic/hypoxic preconditioning. Length = 290

>gnl|CDD|140289 PTZ00263, PTZ00263, protein kinase A catalytic subunit; Provisional

 Score = 37.9 bits (88), Expect = 2e-04
 Identities = 13/31 (41%), Positives = 23/31 (74%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFG 33
           YLH++ I+++DLK +N+ ++    V +TDFG
Sbjct: 133 YLHSKDIIYRDLKPENLLLDNKGHVKVTDFG 163

Length = 329

>gnl|CDD|133240 cd05109, PTKc_HER2, Catalytic domain of the Protein Tyrosine Kinase, HER2

 Score = 37.7 bits (87), Expect = 3e-04
 Identities = 15/34 (44%), Positives = 23/34 (67%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           M YL    ++H+DL ++N+ ++  N V ITDFGL
Sbjct: 122 MSYLEEVRLVHRDLAARNVLVKSPNHVKITDFGL 155

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER2 does not bind to any known EGFR subfamily ligands, but contributes to the kinase activity of all possible heterodimers. It acts as the preferred partner with other ligand-bound EGFR proteins and functions as a signal amplifier, with the HER2-HER3 heterodimer being the most potent pair in mitogenic signaling. HER2 plays an important role in cell development, proliferation, survival and motility. Overexpression of HER2 results in its activation and downstream signaling, even in the absence of ligand. HER2 overexpression, mainly due to gene amplification, has been shown in a variety of human cancers. Its role in breast cancer is especially well-documented. HER2 is up-regulated in about 25% of breast tumors and is associated with increases in tumor aggressiveness, recurrence and mortality. HER2 is a target for monoclonal antibodies and small molecule inhibitors, which are being developed as treatments for cancer. The first humanized antibody approved for clinical use is Trastuzumab (Herceptin), which is being used in combination with other therapies to improve the survival rates of patients with HER2-overexpressing breast cancer. Length = 279

>gnl|CDD|133181 cd05050, PTKc_Musk, Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

 Score = 37.5 bits (87), Expect = 3e-04
 Identities = 18/54 (33%), Positives = 29/54 (53%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPL 54
           M YL  R  +H+DL ++N  + +N  V I DFGL       + Y ++E  + P+
Sbjct: 143 MAYLSERKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKASENDAIPI 196

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates Musk autophosphorylation and activation, leading to the clustering of acetylcholine receptors (AChRs). To date, there is no evidence to suggest that agrin binds directly to Musk. Mutations in AChR, Musk and other partners are responsible for diseases of the NMJ, such as the autoimmune syndrome myasthenia gravis. Length = 288

>gnl|CDD|132988 cd06657, STKc_PAK4, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

 Score = 37.7 bits (87), Expect = 3e-04
 Identities = 13/34 (38%), Positives = 25/34 (73%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           +  LHA+G++H+D+KS +I +  + +V ++DFG 
Sbjct: 129 LSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGF 162

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell morphology and cytoskeletal organization. It is essential for embryonic viability and proper neural development. Mice lacking PAK4 die due to defects in the fetal heart. In addition, their spinal cord motor neurons showed failure to differentiate and migrate. PAK4 also plays a role in cell survival and tumorigenesis. It is overexpressed in many primary tumors including colon, esophageal, and mammary tumors. PAK4 has also been implicated in viral and bacterial infection pathways. Length = 292

>gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

 Score = 37.3 bits (87), Expect = 3e-04
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFG 33
           YLH  G +H+D+K  NI + ++  V + DFG
Sbjct: 116 YLHETGKIHRDIKGANILLTEDGDVKLADFG 146

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K1, also called haematopoietic progenitor kinase 1 (HPK1), is a hematopoietic-specific STK involved in many cellular signaling cascades including MAPK, antigen receptor, apoptosis, growth factor, and cytokine signaling. It participates in the regulation of T cell receptor signaling and T cell-mediated immune responses. MAP4K2 was referred to as germinal center (GC) kinase because of its preferred location in GC B cells. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. It is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). Length = 262

>gnl|CDD|173686 cd05595, STKc_PKB_beta, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

 Score = 37.3 bits (86), Expect = 3e-04
 Identities = 14/32 (43%), Positives = 26/32 (81%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           YLH+R ++++D+K +N+ ++K+  + ITDFGL
Sbjct: 110 YLHSRDVVYRDIKLENLMLDKDGHIKITDFGL 141

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in PKB-beta display normal growth weights but exhibit severe insulin resistance and diabetes, accompanied by lipoatrophy and B-cell failure. Length = 323

>gnl|CDD|173741 cd07843, STKc_CDC2L1, Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

 Score = 37.2 bits (87), Expect = 3e-04
 Identities = 14/34 (41%), Positives = 21/34 (61%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           + +LH   ILH+DLK+ N+ +     + I DFGL
Sbjct: 119 VAHLHDNWILHRDLKTSNLLLNNRGILKICDFGL 152

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the major isoform, associates with cyclin L and is expressed throughout the cell cycle. It is involved in RNA processing and the regulation of transcription. CDK11(p58) associates with cyclin D3 and is expressed during the G2/M phase of the cell cycle. It plays roles in spindle morphogenesis, centrosome maturation, sister chromatid cohesion, and the completion of mitosis. CDK11(p46) is formed from the larger isoforms by caspases during TNFalpha- and Fas-induced apoptosis. It functions as a downstream effector kinase in apoptotic signaling pathways and interacts with eukaryotic initiation factor 3f (eIF3f), p21-activated kinase (PAK1), and Ran-binding protein (RanBPM). Length = 293

>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein Tyrosine Kinases

 Score = 37.0 bits (86), Expect = 3e-04
 Identities = 18/48 (37%), Positives = 32/48 (66%), Gaps = 1/48 (2%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNE 48
           M YL + G +H+DL ++N  + ++N V ++DFGL  +  L + YTS++
Sbjct: 113 MEYLESNGFIHRDLAARNCLVGEDNVVKVSDFGLARYV-LDDQYTSSQ 159

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases form the second largest subfamily of nRTKs and are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. Mutations in Btk cause the severe B-cell immunodeficiency, X-linked agammaglobulinaemia (XLA). Length = 256

>gnl|CDD|173661 cd05570, STKc_PKC, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

 Score = 37.0 bits (86), Expect = 4e-04
 Identities = 13/32 (40%), Positives = 22/32 (68%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           +LH RGI+++DLK  N+ ++    + I DFG+
Sbjct: 111 FLHERGIIYRDLKLDNVLLDSEGHIKIADFGM 142

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only require PS. PKCs phosphorylate and modify the activities of a wide variety of cellular proteins including receptors, enzymes, cytoskeletal proteins, transcription factors, and other kinases. They play a central role in signal transduction pathways that regulate cell migration and polarity, proliferation, differentiation, and apoptosis. Also included in this subfamily are the PKC-like proteins, called PKNs. Length = 318

>gnl|CDD|143349 cd07844, STKc_PCTAIRE_like, Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

 Score = 37.0 bits (86), Expect = 4e-04
 Identities = 14/32 (43%), Positives = 22/32 (68%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           Y H R +LH+DLK +N+ I +  ++ + DFGL
Sbjct: 118 YCHQRRVLHRDLKPQNLLISERGELKLADFGL 149

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the membrane-associated cyclin Y. PCTAIRE-like proteins show unusual expression patterns with high levels in post-mitotic tissues, suggesting that they may be involved in regulating post-mitotic cellular events. Length = 291

>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

 Score = 36.8 bits (86), Expect = 4e-04
 Identities = 15/26 (57%), Positives = 20/26 (76%)

Query: 9   ILHKDLKSKNIFIEKNNKVVITDFGL 34
           +LH+DLK  NIF++ NN V + DFGL
Sbjct: 131 VLHRDLKPANIFLDANNNVKLGDFGL 156

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exit. NIMA is involved in nuclear membrane fission. Vertebrate Nek2 is a cell cycle-regulated STK, localized in centrosomes and kinetochores, that regulates centrosome splitting at the G2/M phase. It also interacts with other mitotic kinases such as Polo-like kinase 1 and may play a role in spindle checkpoint. An increase in the expression of the human NEK2 gene is strongly associated with the progression of non-Hodgkin lymphoma. Length = 265

>gnl|CDD|173678 cd05587, STKc_cPKC, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

 Score = 37.1 bits (86), Expect = 4e-04
 Identities = 12/32 (37%), Positives = 23/32 (71%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           +LH++GI+++DLK  N+ ++    + I DFG+
Sbjct: 116 FLHSKGIIYRDLKLDNVMLDAEGHIKIADFGM 147

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory domain. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. cPKCs are potent kinases for histones, myelin basic protein, and protamine. PKC-gamma is mainly expressed in neuronal tissues. It plays a role in protection from ischemia. Length = 324

>gnl|CDD|173635 cd05054, PTKc_VEGFR, Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

 Score = 37.1 bits (86), Expect = 4e-04
 Identities = 16/34 (47%), Positives = 24/34 (70%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           M +L +R  +H+DL ++NI + +NN V I DFGL
Sbjct: 186 MEFLASRKCIHRDLAARNILLSENNVVKICDFGL 219

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. There are five VEGF ligands in mammals, which bind, in an overlapping pattern to the three VEGFRs, which can form homo or heterodimers. VEGFRs regulate the cardiovascular system. They are critical for vascular development during embryogenesis and blood vessel formation in adults. They induce cellular functions common to other growth factor receptors such as cell migration, survival, and proliferation. VEGFR1 binds VEGFA, VEGFB, and placenta growth factor (PLGF). It regulates monocyte and macrophage migration, vascular permeability, haematopoiesis, and the recruitment of haematopietic progenitor cells from the bone marrow. Length = 337

>gnl|CDD|143341 cd07836, STKc_Pho85, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

 Score = 36.7 bits (85), Expect = 5e-04
 Identities = 13/32 (40%), Positives = 21/32 (65%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           + H   +LH+DLK +N+ I K  ++ + DFGL
Sbjct: 115 FCHENRVLHRDLKPQNLLINKRGELKLADFGL 146

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment. It is not essential for yeast viability and is the functional homolog of mammalian CDK5, which plays a role in central nervous system development. Length = 284

>gnl|CDD|132976 cd06645, STKc_MAP4K3, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

 Score = 37.0 bits (85), Expect = 5e-04
 Identities = 14/32 (43%), Positives = 22/32 (68%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           YLH++G +H+D+K  NI +  N  V + DFG+
Sbjct: 121 YLHSKGKMHRDIKGANILLTDNGHVKLADFGV 152

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. MAP4K3 is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. mTOR regulates ribosome biogenesis and protein translation, and is frequently deregulated in cancer. Length = 267

>gnl|CDD|132978 cd06647, STKc_PAK_I, Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

 Score = 36.8 bits (85), Expect = 5e-04
 Identities = 13/32 (40%), Positives = 22/32 (68%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           +LH+  ++H+D+KS NI +  +  V +TDFG 
Sbjct: 130 FLHSNQVIHRDIKSDNILLGMDGSVKLTDFGF 161

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs, also called conventional PAKs, include PAK1, PAK2, and PAK3. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). They interact with the SH3 domain containing proteins Nck, Grb2 and PIX. Binding of group I PAKs to activated GTPases leads to conformational changes that destabilize the AID, allowing autophosphorylation and full activation of the kinase domain. Known group I PAK substrates include MLCK, Bad, Raf, MEK1, LIMK, Merlin, Vimentin, Myc, Stat5a, and Aurora A, among others. Length = 293

>gnl|CDD|133234 cd05103, PTKc_VEGFR2, Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

 Score = 36.9 bits (85), Expect = 5e-04
 Identities = 16/34 (47%), Positives = 24/34 (70%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           M +L +R  +H+DL ++NI + +NN V I DFGL
Sbjct: 192 MEFLASRKCIHRDLAARNILLSENNVVKICDFGL 225

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosphorylation and activation. VEGFR2 binds the ligands VEGFA, VEGFC, VEGFD and VEGFE. VEGFR2 signaling is implicated in all aspects of normal and pathological vascular endothelial cell biology. It induces a variety of cellular effects including migration, survival, and proliferation. It is critical in regulating embryonic vascular development and angiogenesis. VEGFR2 is the major signal transducer in pathological angiogenesis including cancer and diabetic retinopathy, and is a target for inhibition in cancer therapy. Length = 343

>gnl|CDD|177649 PLN00009, PLN00009, cyclin-dependent kinase A; Provisional

 Score = 36.7 bits (85), Expect = 5e-04
 Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 1/35 (2%)

Query: 1   MGYLHARGILHKDLKSKNIFIEK-NNKVVITDFGL 34
           + Y H+  +LH+DLK +N+ I++  N + + DFGL
Sbjct: 115 IAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGL 149

Length = 294

>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

 Score = 36.8 bits (85), Expect = 5e-04
 Identities = 13/39 (33%), Positives = 22/39 (56%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK 39
           M YL  +  +H+DL ++N  + +N+ V + DFGL     
Sbjct: 117 MEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMT 155

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively active and associates into tetramers, resulting in a hyperactive kinase sending a continuous signal. This leads to uncontrolled proliferation, morphological transformation and anti-apoptotic effects. BCR-Abl is the target of selective inhibitors, such as imatinib (Gleevec), used in the treatment of CML. Abl2, also known as ARG (Abelson-related gene), is thought to play a cooperative role with Abl in the proper development of the nervous system. The Tel-ARG fusion protein, resulting from reciprocal translocation between chromosomes 1 and 12, is associated with acute myeloid leukemia (AML). The TEL gene is a frequent fusion partner of other tyr kinase oncogenes, including Tel/Abl, Tel/PDGFRbeta, and Tel/Jak2, found in patients with leukemia and myeloproliferative disorders. Length = 263

>gnl|CDD|173725 cd06608, STKc_myosinIII_like, Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

 Score = 36.5 bits (85), Expect = 5e-04
 Identities = 14/32 (43%), Positives = 23/32 (71%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           YLH   ++H+D+K +NI + KN +V + DFG+
Sbjct: 128 YLHENKVIHRDIKGQNILLTKNAEVKLVDFGV 159

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin III may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. It may also function as a cargo carrier during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. The Drosophila class III myosin, called NinaC (Neither inactivation nor afterpotential protein C), is critical in normal adaptation and termination of photoresponse. Vertebrates contain two isoforms of class III myosin, IIIA and IIIB. This subfamily also includes mammalian NIK-like embryo-specific kinase (NESK), Traf2- and Nck-interacting kinase (TNIK), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6). MAP4Ks are involved in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Length = 275

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 36.8 bits (86), Expect = 5e-04
 Identities = 19/45 (42%), Positives = 30/45 (66%)

Query: 48  EKPSSPLGEGKEEEEEKEEEGEEEDNEKEEKEKKEEEEEEEEEEK 92
           E+      +     ++KEEE EEE  +KEE++++EEEE EEE+E+
Sbjct: 424 EEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEE 468

Length = 482

>gnl|CDD|173718 cd05629, STKc_NDR_like_fungal, Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

 Score = 36.8 bits (85), Expect = 5e-04
 Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 1/41 (2%)

Query: 4   LHARGILHKDLKSKNIFIEKNNKVVITDFGL-FNFSKLYNS 43
           +H  G +H+D+K  NI I++   + ++DFGL   F K ++S
Sbjct: 117 VHKLGFIHRDIKPDNILIDRGGHIKLSDFGLSTGFHKQHDS 157

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of Ace2p activity and cellular morphogenesis) network. CBK1 and Orb6 play similar roles in coordinating cell morphology with cell cycle progression. Ukc1 is involved in morphogenesis, pathogenicity, and pigment formation. Cot1 plays a role in polar tip extension. Length = 377

>gnl|CDD|217503 pfam03344, Daxx, Daxx Family

 Score = 36.8 bits (85), Expect = 6e-04
 Identities = 23/50 (46%), Positives = 32/50 (64%)

Query: 42  NSYTSNEKPSSPLGEGKEEEEEKEEEGEEEDNEKEEKEKKEEEEEEEEEE 91
            S  S+    SP    +E EEE+  E EEE+ E+EE+E++E EEEE E+E
Sbjct: 421 PSKASSTSGESPSMASQESEEEESVEEEEEEEEEEEEEEQESEEEEGEDE 470

The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis, but precise role played by Daxx remains to be determined. Daxx forms a complex with Axin. Length = 715

>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases

 Score = 36.7 bits (85), Expect = 6e-04
 Identities = 13/34 (38%), Positives = 24/34 (70%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           M YL ++  +H+DL ++N  + +NN + I+DFG+
Sbjct: 106 MEYLESKNCIHRDLAARNCLVGENNVLKISDFGM 139

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251

>gnl|CDD|133205 cd05074, PTKc_Tyro3, Catalytic domain of the Protein Tyrosine Kinase, Tyro3

 Score = 36.4 bits (84), Expect = 6e-04
 Identities = 13/34 (38%), Positives = 22/34 (64%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           M YL ++  +H+DL ++N  + +N  V + DFGL
Sbjct: 126 MEYLSSKNFIHRDLAARNCMLNENMTVCVADFGL 159

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic factor. It is also expressed in osteoclasts and has a role in bone resorption. Length = 273

>gnl|CDD|173714 cd05625, STKc_LATS1, Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

 Score = 36.5 bits (84), Expect = 6e-04
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 3/50 (6%)

Query: 4   LHARGILHKDLKSKNIFIEKNNKVVITDFGL---FNFSKLYNSYTSNEKP 50
           +H  G +H+D+K  NI I+++  + +TDFGL   F ++     Y S +  
Sbjct: 117 VHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQSGDHV 166

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype and poor prognosis. LATS1 induces G2 arrest and promotes cytokinesis. It may be a component of the mitotic exit network in higher eukaryotes. Length = 382

>gnl|CDD|173750 cd07857, STKc_MPK1, Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

 Score = 36.6 bits (85), Expect = 6e-04
 Identities = 13/34 (38%), Positives = 23/34 (67%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           + Y+H+  +LH+DLK  N+ +  + ++ I DFGL
Sbjct: 118 LKYIHSANVLHRDLKPGNLLVNADCELKICDFGL 151

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall construction, morphogenesis, and ion homeostasis. MPK1 is activated in response to cell wall stress including heat stimulation, osmotic shock, UV irradiation, and any agents that interfere with cell wall biogenesis such as chitin antagonists, caffeine, or zymolase. MPK1 is regulated by the MAP2Ks Mkk1/2, which are regulated by the MAP3K Bck1. Pmk1 is also activated by multiple stresses including elevated temperatures, hyper- or hypotonic stress, glucose deprivation, exposure to cell-wall damaging compounds, and oxidative stress. It is regulated by the MAP2K Pek1, which is regulated by the MAP3K Mkh1. Length = 332

>gnl|CDD|173760 cd08220, STKc_Nek8, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

 Score = 36.4 bits (84), Expect = 6e-04
 Identities = 16/33 (48%), Positives = 26/33 (78%), Gaps = 1/33 (3%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVV-ITDFGL 34
           ++H + ILH+DLK++NI ++K+  VV I DFG+
Sbjct: 116 HVHTKLILHRDLKTQNILLDKHKMVVKIGDFGI 148

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with a rare form of juvenile renal cystic disease, nephronophthisis type 9. It has been suggested that a defect in the ciliary localization of Nek8 contributes to the development of cysts manifested by these diseases. Length = 256

>gnl|CDD|173642 cd05075, PTKc_Axl, Catalytic domain of the Protein Tyrosine Kinase, Axl

 Score = 36.5 bits (84), Expect = 6e-04
 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 2/42 (4%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYN 42
           M YL ++  +H+DL ++N  + +N  V + DFGL    K+YN
Sbjct: 125 MEYLSSKSFIHRDLAARNCMLNENMNVCVADFGLSK--KIYN 164

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transformed cells. Axl signaling is important in many cellular functions such as survival, anti-apoptosis, proliferation, migration, and adhesion. Axl was originally isolated from patients with chronic myelogenous leukemia and a chronic myeloproliferative disorder. Axl is overexpressed in many human cancers including colon, squamous cell, thyroid, breast, and lung carcinomas. Length = 272

>gnl|CDD|173625 cd05032, PTKc_InsR_like, Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

 Score = 36.6 bits (85), Expect = 6e-04
 Identities = 13/34 (38%), Positives = 22/34 (64%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           M YL A+  +H+DL ++N  + ++  V I DFG+
Sbjct: 132 MAYLAAKKFVHRDLAARNCMVAEDLTVKIGDFGM 165

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR and IGF-1R, which share 84% sequence identity in their kinase domains, display physiologically distinct yet overlapping functions in cell growth, differentiation, and metabolism. InsR activation leads primarily to metabolic effects while IGF-1R activation stimulates mitogenic pathways. In cells expressing both receptors, InsR/IGF-1R hybrids are found together with classical receptors. Both receptors can interact with common adaptor molecules such as IRS-1 and IRS-2. Length = 277

>gnl|CDD|140293 PTZ00267, PTZ00267, NIMA-related protein kinase; Provisional

 Score = 36.5 bits (84), Expect = 6e-04
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 3/52 (5%)

Query: 4   LHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLG 55
           +H+R ++H+DLKS NIF+     + + DFG   FSK Y+   S +  SS  G
Sbjct: 185 VHSRKMMHRDLKSANIFLMPTGIIKLGDFG---FSKQYSDSVSLDVASSFCG 233

Length = 478

>gnl|CDD|173742 cd07845, STKc_CDK10, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

 Score = 36.2 bits (84), Expect = 7e-04
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGLF-NFSKLYNSYTSN 47
           YLH   I+H+DLK  N+ +     + I DFGL   +       T  
Sbjct: 123 YLHENFIIHRDLKVSNLLLTDKGCLKIADFGLARTYGLPAKPMTPK 168

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing increases the transcription of c-RAF and the activation of the p42/p44 MAPK pathway, which leads to antiestrogen resistance. Patients who express low levels of CDK10 relapse early on tamoxifen. Length = 309

>gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

 Score = 36.4 bits (85), Expect = 7e-04
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFG 33
           YLH  G +H+D+K+ NI + +   V + DFG
Sbjct: 113 YLHEEGKIHRDIKAANILLSEEGDVKLADFG 143

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) signaling pathway, and plays a role in cytokinesis. SPS1 plays a role in regulating proteins required for spore wall formation. MST4 plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. STK25 may play a role in the regulation of cell migration and polarization. Length = 274

>gnl|CDD|143377 cd07872, STKc_PCTAIRE2, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

 Score = 36.1 bits (83), Expect = 8e-04
 Identities = 17/48 (35%), Positives = 27/48 (56%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNE 48
           + Y H R +LH+DLK +N+ I +  ++ + DFGL     +     SNE
Sbjct: 117 LAYCHRRKVLHRDLKPQNLLINERGELKLADFGLARAKSVPTKTYSNE 164

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play a role in regulating mitochondrial function in neurons. Length = 309

>gnl|CDD|173709 cd05619, STKc_nPKC_theta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

 Score = 36.1 bits (83), Expect = 8e-04
 Identities = 15/44 (34%), Positives = 29/44 (65%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTS 46
           +LH++GI+++DLK  NI ++ +  + I DFG+   + L ++ T 
Sbjct: 111 FLHSKGIVYRDLKLDNILLDTDGHIKIADFGMCKENMLGDAKTC 154

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. Although T-cells also express other PKC isoforms, PKC-theta is unique in that upon antigen stimulation, it is translocated to the plasma membrane at the immunological synapse, where it mediates signals essential for T-cell activation. It is essential for TCR-induced proliferation, cytokine production, T-cell survival, and the differentiation and effector function of T-helper (Th) cells, particularly Th2 and Th17. PKC-theta is being developed as a therapeutic target for Th2-mediated allergic inflammation and Th17-mediated autoimmune diseases. Length = 316

>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

 Score = 36.1 bits (84), Expect = 8e-04
 Identities = 11/33 (33%), Positives = 21/33 (63%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFG 33
           + YLH+   +H+D+K+ NI + +  +  + DFG
Sbjct: 112 LEYLHSNKKIHRDIKAGNILLNEEGQAKLADFG 144

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256

>gnl|CDD|143385 cd07880, STKc_p38gamma_MAPK12, Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

 Score = 36.1 bits (83), Expect = 8e-04
 Identities = 15/32 (46%), Positives = 24/32 (75%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           Y+HA GI+H+DLK  N+ + ++ ++ I DFGL
Sbjct: 133 YIHAAGIIHRDLKPGNLAVNEDCELKILDFGL 164

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12, is predominantly expressed in skeletal muscle. Unlike p38alpha and p38beta, p38gamma is insensitive to pyridinylimidazoles. It displays an antagonizing function compared to p38alpha. p38gamma inhibits, while p38alpha stimulates, c-Jun phosphorylation and AP-1 mediated transcription. p38gamma also plays a role in the signaling between Ras and the estrogen receptor and has been implicated to increase cell invasion and breast cancer progression. In Xenopus, p38gamma is critical in the meiotic maturation of oocytes. Length = 343

>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

 Score = 36.0 bits (84), Expect = 9e-04
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           ++H  G  H+DLK +N+ +     V I DFGL
Sbjct: 114 HIHKHGFFHRDLKPENLLVSGPEVVKIADFGL 145

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertility. It functions as a coactivator of the androgen receptor in prostate cells. MRK, also called Intestinal Cell Kinase (ICK), is expressed ubiquitously, with highest expression in the ovary and uterus. A missense mutation in MRK causes endocrine-cerebro-osteodysplasia (ECO), suggesting that this protein plays an important role in the development of many organs. MAK and MRK may be involved in regulating cell cycle and cell fate. Ime2p is a meiosis-specific kinase that is important during meiotic initiation and during the later stages of meiosis. Mde3 functions downstream of the transcription factor Mei-4 which is essential for meiotic prophase I. Length = 283

>gnl|CDD|173697 cd05606, STKc_beta_ARK, Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

 Score = 36.1 bits (83), Expect = 9e-04
 Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 9/54 (16%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGLF-NFSKLYNSYTSNEKPSSPLG 55
           ++H R ++++DLK  NI ++++  V I+D GL  +FSK        +KP + +G
Sbjct: 112 HMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSK--------KKPHASVG 157

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is composed of GRK2, GRK3, and similar proteins. GRK2 and GRK3 are both widely expressed in many tissues, although GRK2 is present at higher levels. They contain an N-terminal RGS homology (RH) domain, a central catalytic domain, and C-terminal pleckstrin homology (PH) domain that mediates PIP2 and G protein betagamma-subunit translocation to the membrane. GRK2 (also called beta-ARK or beta-ARK1) is important in regulating several cardiac receptor responses. It plays a role in cardiac development and in hypertension. Deletion of GRK2 in mice results in embryonic lethality, caused by hypoplasia of the ventricular myocardium. GRK2 also plays important roles in the liver (as a regulator of portal blood pressure), in immune cells, and in the nervous system. Altered GRK2 expression has been reported in several disorders including major depression, schizophrenia, bipolar disorder, and Parkinsonism. Length = 278

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 36.2 bits (83), Expect = 9e-04
 Identities = 18/43 (41%), Positives = 29/43 (67%), Gaps = 1/43 (2%)

Query: 51  SSPLGEGKEEEEEK-EEEGEEEDNEKEEKEKKEEEEEEEEEEK 92
           SS L + +EE  EK + E E++  E+ E+EK++E+E E E E+
Sbjct: 574 SSKLAKKREEAVEKAKREAEQKAREEREREKEKEKERERERER 616

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 35.7 bits (83), Expect = 0.001
 Identities = 20/38 (52%), Positives = 29/38 (76%)

Query: 56  EGKEEEEEKEEEGEEEDNEKEEKEKKEEEEEEEEEEKN 93
           + K    +K+EE EEE+ EK+E+EK+EEEEE EEE++ 
Sbjct: 431 KKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEE 468

Length = 482

>gnl|CDD|143381 cd07876, STKc_JNK2, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

 Score = 36.2 bits (83), Expect = 0.001
 Identities = 15/32 (46%), Positives = 23/32 (71%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           +LH+ GI+H+DLK  NI ++ +  + I DFGL
Sbjct: 138 HLHSAGIIHRDLKPSNIVVKSDCTLKILDFGL 169

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jnk1 or Jnk2) could survive but disruption of both genes resulted in lethality. However, recent studies have shown that JNK1 and JNK2 perform distinct functions through specific binding partners and substrates. JNK2 is specifically translocated to the mitochondria during dopaminergic cell death. Specific substrates include the microtubule-associated proteins DCX and Tau, as well as TIF-IA which is involved in ribosomal RNA synthesis regulation. Mice deficient in Jnk2 show protection against arthritis, type 1 diabetes, atherosclerosis, abdominal aortic aneurysm, cardiac cell death, TNF-induced liver damage, and tumor growth, indicating that JNK2 may play roles in the pathogenesis of these diseases. Length = 359

>gnl|CDD|173705 cd05614, STKc_MSK2_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

 Score = 36.1 bits (83), Expect = 0.001
 Identities = 15/32 (46%), Positives = 24/32 (75%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           +LH  GI+++D+K +NI ++    VV+TDFGL
Sbjct: 120 HLHKLGIVYRDIKLENILLDSEGHVVLTDFGL 151

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSK2 and MSK1 play nonredundant roles in activating histone H3 kinases, which play pivotal roles in compaction of the chromatin fiber. MSK2 is the required H3 kinase in response to stress stimuli and activation of the p38 MAPK pathway. MSK2 also plays a role in the pathogenesis of psoriasis. Length = 332

>gnl|CDD|173744 cd07847, STKc_CDKL1_4, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

 Score = 35.8 bits (83), Expect = 0.001
 Identities = 11/31 (35%), Positives = 19/31 (61%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFG 33
           + H    +H+D+K +NI I K  ++ + DFG
Sbjct: 115 FCHKHNCIHRDVKPENILITKQGQIKLCDFG 145

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The function of CDKL4 is unknown. Length = 286

>gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

 Score = 36.0 bits (83), Expect = 0.001
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVV-ITDFG 33
           + YLH   I+H+D+K  N+ I+   + + I DFG
Sbjct: 116 LSYLHENQIIHRDVKGANLLIDSTGQRLRIADFG 149

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively. MEKK1 is important in regulating cell survival and apoptosis. MEKK1 also plays a role in cell migration, tissue maintenance and homeostasis, and wound healing. Length = 268

>gnl|CDD|173644 cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

 Score = 35.7 bits (82), Expect = 0.001
 Identities = 15/34 (44%), Positives = 24/34 (70%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           M YL +R  +H+DL ++N+ +E  ++V I DFGL
Sbjct: 122 MDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGL 155

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak1 is widely expressed in many tissues. Many cytokines are dependent on Jak1 for signaling, including those that use the shared receptor subunits common gamma chain (IL-2, IL-4, IL-7, IL-9, IL-15, IL-21) and gp130 (IL-6, IL-11, oncostatin M, G-CSF, and IFNs, among others). The many varied interactions of Jak1 and its ubiquitous expression suggest many biological roles. Jak1 is important in neurological development, as well as in lymphoid development and function. It also plays a role in the pathophysiology of cardiac hypertrophy and heart failure. A mutation in the ATP-binding site of Jak1 was identified in a human uterine leiomyosarcoma cell line, resulting in defective cytokine induction and antigen presentation, thus allowing the tumor to evade the immune system. Length = 284

>gnl|CDD|173691 cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

 Score = 35.8 bits (83), Expect = 0.001
 Identities = 14/31 (45%), Positives = 21/31 (67%)

Query: 4   LHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           LH  G +H+DLK +N  I+ +  + +TDFGL
Sbjct: 117 LHELGYIHRDLKPENFLIDASGHIKLTDFGL 147

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis. Dbf2p is important in regulating the mitotic exit network (MEN) and in cytokinesis. Length = 333

>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

 Score = 35.7 bits (82), Expect = 0.001
 Identities = 12/34 (35%), Positives = 24/34 (70%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           M YL ++ ++H+DL ++NI + ++    ++DFGL
Sbjct: 113 MEYLESKKLVHRDLAARNILVSEDGVAKVSDFGL 146

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As a negative regulator of Src kinases, Chk may play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Chk is expressed in brain and hematopoietic cells. Studies in mice reveal that Chk is not functionally redundant with Csk and that it plays an important role as a regulator of immune responses. Chk also plays a role in neural differentiation in a manner independent of Src by enhancing Mapk activation via Ras-mediated signaling. Length = 254

>gnl|CDD|143378 cd07873, STKc_PCTAIRE1, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

 Score = 35.8 bits (82), Expect = 0.001
 Identities = 17/48 (35%), Positives = 27/48 (56%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNE 48
           + Y H R +LH+DLK +N+ I +  ++ + DFGL     +     SNE
Sbjct: 117 LNYCHRRKVLHRDLKPQNLLINERGELKLADFGLARAKSIPTKTYSNE 164

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may play a role in regulating neurite outgrowth. It can also associate with Trap (Tudor repeat associator with PCTAIRE-2), a physiological partner of PCTAIRE-2; with p11, a small dimeric protein with similarity to S100; and with 14-3-3 proteins, mediators of phosphorylation-dependent interactions in many different proteins. Length = 301

>gnl|CDD|143367 cd07862, STKc_CDK6, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

 Score = 35.8 bits (82), Expect = 0.001
 Identities = 12/34 (35%), Positives = 24/34 (70%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           + +LH+  ++H+DLK +NI +  + ++ + DFGL
Sbjct: 123 LDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGL 156

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytoplasm. It is also present in the ruffling edge of spreading fibroblasts and may play a role in cell spreading. It binds to the p21 inhibitor without any effect on its own activity and it is overexpressed in squamous cell carcinomas and neuroblastomas. CDK6 has also been shown to inhibit cell differentiation in many cell types. Length = 290

>gnl|CDD|143379 cd07874, STKc_JNK3, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

 Score = 35.4 bits (81), Expect = 0.001
 Identities = 15/32 (46%), Positives = 23/32 (71%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           +LH+ GI+H+DLK  NI ++ +  + I DFGL
Sbjct: 134 HLHSAGIIHRDLKPSNIVVKSDCTLKILDFGL 165

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, stroke, sciatic axotomy neural death, and neuronal death due to NGF deprivation, oxidative stress, or exposure to beta-amyloid peptide. This suggests that JNK3 may play roles in the pathogenesis of these diseases. Length = 355

>gnl|CDD|173764 cd08224, STKc_Nek6_Nek7, Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

 Score = 35.5 bits (82), Expect = 0.001
 Identities = 13/35 (37%), Positives = 22/35 (62%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNF 37
           ++H++ I+H+D+K  N+FI     V + D GL  F
Sbjct: 121 HMHSKRIMHRDIKPANVFITATGVVKLGDLGLGRF 155

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may also be regulators of the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|165476 PHA03210, PHA03210, serine/threonine kinase US3; Provisional

 Score = 35.4 bits (81), Expect = 0.001
 Identities = 13/31 (41%), Positives = 24/31 (77%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFG 33
           Y+H + ++H+D+K +NIF+  + K+V+ DFG
Sbjct: 282 YIHDKKLIHRDIKLENIFLNCDGKIVLGDFG 312

Length = 501

>gnl|CDD|143382 cd07877, STKc_p38alpha_MAPK14, Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

 Score = 35.4 bits (81), Expect = 0.001
 Identities = 13/34 (38%), Positives = 24/34 (70%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           + Y+H+  I+H+DLK  N+ + ++ ++ I DFGL
Sbjct: 133 LKYIHSADIIHRDLKPSNLAVNEDCELKILDFGL 166

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14, is expressed in most tissues and is the major isoform involved in the immune and inflammatory response. It is the central p38 MAPK involved in myogenesis. It plays a role in regulating cell cycle check-point transition and promoting cell differentiation. p38alpha also regulates cell proliferation and death through crosstalk with the JNK pathway. Its substrates include MAPK activated protein kinase 2 (MK2), MK5, and the transcription factors ATF2 and Mitf. Length = 345

>gnl|CDD|132967 cd06636, STKc_MAP4K4_6, Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

 Score = 35.4 bits (81), Expect = 0.001
 Identities = 12/34 (35%), Positives = 25/34 (73%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           + +LHA  ++H+D+K +N+ + +N +V + DFG+
Sbjct: 134 LAHLHAHKVIHRDIKGQNVLLTENAEVKLVDFGV 167

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K4 is also called Nck Interacting kinase (NIK). It facilitates the activation of the MAPKs, extracellular signal-regulated kinase (ERK) 1, ERK2, and c-Jun N-terminal kinase (JNK), by phosphorylating and activating MEKK1. MAP4K4 plays a role in tumor necrosis factor (TNF) alpha-induced insulin resistance. MAP4K4 silencing in skeletal muscle cells from type II diabetic patients restores insulin-mediated glucose uptake. MAP4K4, through JNK, also plays a broad role in cell motility, which impacts inflammation, homeostasis, as well as the invasion and spread of cancer. MAP4K4 is found to be highly expressed in most tumor cell lines relative to normal tissue. MAP4K6 (also called MINK for Misshapen/NIKs-related kinase) is activated after Ras induction and mediates activation of p38 MAPK. MAP4K6 plays a role in cell cycle arrest, cytoskeleton organization, cell adhesion, and cell motility. Length = 282

>gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

 Score = 35.3 bits (81), Expect = 0.002
 Identities = 13/34 (38%), Positives = 23/34 (67%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           M YL A   +H+DL ++N+ + ++N   ++DFGL
Sbjct: 115 MEYLEANNFVHRDLAARNVLVSEDNVAKVSDFGL 148

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Csk is expressed in a wide variety of tissues. As a negative regulator of Src, Csk plays a role in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, Csk also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. Length = 256

>gnl|CDD|133230 cd05099, PTKc_FGFR4, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

 Score = 35.3 bits (81), Expect = 0.002
 Identities = 14/34 (41%), Positives = 24/34 (70%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           M YL +R  +H+DL ++N+ + ++N + I DFGL
Sbjct: 147 MEYLESRRCIHRDLAARNVLVTEDNVMKIADFGL 180

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Unlike other FGFRs, there is only one splice form of FGFR4. It binds FGF1, FGF2, FGF6, FGF19, and FGF23. FGF19 is a selective ligand for FGFR4. Although disruption of FGFR4 in mice causes no obvious phenotype, in vivo inhibition of FGFR4 in cultured skeletal muscle cells resulted in an arrest of muscle progenitor differentiation. FGF6 and FGFR4 are uniquely expressed in myofibers and satellite cells. FGF6/FGFR4 signaling appears to play a key role in the regulation of muscle regeneration. A polymorphism in FGFR4 is found in head and neck squamous cell carcinoma. Length = 314

>gnl|CDD|236586 PRK09605, PRK09605, bifunctional UGMP family protein/serine/threonine protein kinase; Validated

 Score = 35.2 bits (82), Expect = 0.002
 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 2   GYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKL 40
             LH  GI+H DL + N FI +++++ + DFGL  +S L
Sbjct: 442 AKLHKAGIVHGDLTTSN-FIVRDDRLYLIDFGLGKYSDL 479

Length = 535

>gnl|CDD|88519 cd05618, STKc_aPKC_iota, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

 Score = 35.4 bits (81), Expect = 0.002
 Identities = 13/34 (38%), Positives = 24/34 (70%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           + YLH RGI+++DLK  N+ ++    + +TD+G+
Sbjct: 109 LNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGM 142

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target of tumor-specific gene amplification in many human cancers, and has been identified as a human oncogene. In addition to its role in transformed growth, PKC-iota also promotes invasion, chemoresistance, and tumor cell survival. Expression profiling of PKC-iota is a prognostic marker of poor clinical outcome in several human cancers. PKC-iota also plays a role in establishing cell polarity, and has critical embryonic functions. Length = 329

>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

 Score = 35.2 bits (81), Expect = 0.002
 Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSN 47
           M YL ++  +H+DL ++N  ++    V ++DFGL  +  L + YTS+
Sbjct: 113 MAYLESKQFIHRDLAARNCLVDDQGCVKVSDFGLSRYV-LDDEYTSS 158

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Btk contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. Bmx is primarily expressed in bone marrow and the arterial endothelium, and plays an important role in ischemia-induced angiogenesis. It facilitates arterial growth, capillary formation, vessel maturation, and bone marrow-derived endothelial progenitor cell mobilization. Length = 256

>gnl|CDD|173683 cd05592, STKc_nPKC_theta_delta, Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

 Score = 35.2 bits (81), Expect = 0.002
 Identities = 13/32 (40%), Positives = 24/32 (75%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           +LH +GI+++DLK  N+ ++K+  + I DFG+
Sbjct: 111 FLHKKGIIYRDLKLDNVLLDKDGHIKIADFGM 142

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. Length = 316

>gnl|CDD|143384 cd07879, STKc_p38delta_MAPK13, Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

 Score = 34.9 bits (80), Expect = 0.002
 Identities = 14/32 (43%), Positives = 24/32 (75%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           Y+H+ GI+H+DLK  N+ + ++ ++ I DFGL
Sbjct: 132 YIHSAGIIHRDLKPGNLAVNEDCELKILDFGL 163

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13, is found in skeletal muscle, heart, lung, testis, pancreas, and small intestine. It regulates microtubule function by phosphorylating Tau. It activates the c-jun promoter and plays a role in G2 cell cycle arrest. It also controls the degration of c-Myb, which is associated with myeloid leukemia and poor prognosis in colorectal cancer. p38delta is the main isoform involved in regulating the differentiation and apoptosis of keratinocytes. Length = 342

>gnl|CDD|133219 cd05088, PTKc_Tie2, Catalytic domain of the Protein Tyrosine Kinase, Tie2

 Score = 35.0 bits (80), Expect = 0.002
 Identities = 17/50 (34%), Positives = 26/50 (52%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKP 50
           M YL  +  +H+DL ++NI + +N    I DFGL    ++Y   T    P
Sbjct: 137 MDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKTMGRLP 186

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. Tie2 signaling plays key regulatory roles in vascular integrity and quiescence, and in inflammation. Length = 303

>gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

 Score = 34.9 bits (80), Expect = 0.002
 Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPL 54
           M YL +  ++H+DL ++N  + +N  V ++DFG+  F  L + YTS+     P+
Sbjct: 113 MAYLESSNVIHRDLAARNCLVGENQVVKVSDFGMTRFV-LDDQYTSSTGTKFPV 165

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Itk contains the Tec homology (TH) domain containing one proline-rich region and a zinc-binding region. Tec kinases are expressed mainly by haematopoietic cells. Itk is expressed in T-cells and mast cells, and is important in their development and differentiation. Of the three Tec kinases expressed in T-cells, Itk plays the predominant role in T-cell receptor (TCR) signaling. It is activated by phosphorylation upon TCR crosslinking and is involved in the pathway resulting in phospholipase C-gamma1 activation and actin polymerization. It also plays a role in the downstream signaling of the T-cell costimulatory receptor CD28, the T-cell surface receptor CD2, and the chemokine receptor CXCR4. In addition, Itk is crucial for the development of T-helper(Th)2 effector responses. Length = 256

>gnl|CDD|173715 cd05626, STKc_LATS2, Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

 Score = 35.0 bits (80), Expect = 0.002
 Identities = 13/31 (41%), Positives = 21/31 (67%)

Query: 4   LHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           +H  G +H+D+K  NI I+ +  + +TDFGL
Sbjct: 117 VHKMGFIHRDIKPDNILIDLDGHIKLTDFGL 147

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with poor prognosis in acute lymphoblastic leukemia and breast cancer. Length = 381

>gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

 Score = 35.0 bits (81), Expect = 0.002
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           M YL     +H+DL ++NI +  N    ++DFGL
Sbjct: 119 MKYLSEMNYVHRDLAARNILVNSNLVCKVSDFGL 152

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. This allows ephrin/EphR dimers to form, leading to the activation of the intracellular tyr kinase domain. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). The main effect of ephrin/EphR interaction is cell-cell repulsion or adhesion. Ephrin/EphR signaling is important in neural development and plasticity, cell morphogenesis and proliferation, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|173632 cd05051, PTKc_DDR, Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

 Score = 34.6 bits (80), Expect = 0.002
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 5/47 (10%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSN 47
           M YL +   +H+DL ++N  + KN  + I DFG+       N Y+S+
Sbjct: 143 MRYLESLNFVHRDLATRNCLVGKNYTIKIADFGMSR-----NLYSSD 184

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 296

>gnl|CDD|143380 cd07875, STKc_JNK1, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

 Score = 35.0 bits (80), Expect = 0.002
 Identities = 15/32 (46%), Positives = 23/32 (71%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           +LH+ GI+H+DLK  NI ++ +  + I DFGL
Sbjct: 141 HLHSAGIIHRDLKPSNIVVKSDCTLKILDFGL 172

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jnk1 or Jnk2) could survive but disruption of both genes resulted in lethality. However, recent studies have shown that JNK1 and JNK2 perform distinct functions through specific binding partners and substrates. JNK1 specifically binds with JAMP (JNK1-associated membrane protein), which regulates the duration of JNK1 activity in response to stimuli. Specific JNK1 substrates include Itch and SG10, which are implicated in Th2 responses and airway inflammation, and microtubule dynamics and axodendritic length, respectively. Mice deficient in Jnk1 are protected against arthritis, obesity, type 2 diabetes, cardiac cell death, and non-alcoholic liver disease, suggesting that JNK1 may play roles in the pathogenesis of these diseases. Length = 364

>gnl|CDD|173634 cd05053, PTKc_FGFR, Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

 Score = 34.7 bits (80), Expect = 0.002
 Identities = 11/34 (32%), Positives = 24/34 (70%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           M +L ++  +H+DL ++N+ + +++ + I DFGL
Sbjct: 145 MEFLASKKCIHRDLAARNVLVTEDHVMKIADFGL 178

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation, and intracellular signaling. There are at least 23 FGFs and four types of FGFRs. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. FGF/FGFR signaling is important in the regulation of embryonic development, homeostasis, and regenerative processes. Depending on the cell type and stage, FGFR signaling produces diverse cellular responses including proliferation, growth arrest, differentiation, and apoptosis. Aberrant signaling leads to many human diseases such as skeletal, olfactory, and metabolic disorders, as well as cancer. Length = 293

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 34.9 bits (81), Expect = 0.003
 Identities = 20/49 (40%), Positives = 32/49 (65%)

Query: 45  TSNEKPSSPLGEGKEEEEEKEEEGEEEDNEKEEKEKKEEEEEEEEEEKN 93
           T ++K +  + +  E+ E+K EE ++E  +K    KK+EEEEEEE+EK 
Sbjct: 403 TGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKK 451

Length = 482

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 34.5 bits (80), Expect = 0.003
 Identities = 17/39 (43%), Positives = 32/39 (82%)

Query: 54  LGEGKEEEEEKEEEGEEEDNEKEEKEKKEEEEEEEEEEK 92
             E K+E+++K   G++++ E+EE+++K+EEE+EEEEE+
Sbjct: 423 REEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEE 461

Length = 482

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 34.5 bits (80), Expect = 0.003
 Identities = 20/37 (54%), Positives = 32/37 (86%)

Query: 56  EGKEEEEEKEEEGEEEDNEKEEKEKKEEEEEEEEEEK 92
             K+EEEE+EE+ ++E+ ++EE+E+ EEE+EEEEE+K
Sbjct: 437 GKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKK 473

Length = 482

>gnl|CDD|143373 cd07868, STKc_CDK8, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

 Score = 34.6 bits (79), Expect = 0.003
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 13/58 (22%)

Query: 3   YLHARGILHKDLKSKNIFI----EKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGE 56
           YLHA  +LH+DLK  NI +     +  +V I D G   F++L+NS      P  PL +
Sbjct: 123 YLHANWVLHRDLKPANILVMGEGPERGRVKIADMG---FARLFNS------PLKPLAD 171

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA polymerase II (RNAP II)-dependent transcription. CDK8 phosphorylates cyclin H, a subunit of the general transcription factor TFIIH, which results in the inhibition of TFIIH-dependent phosphorylation of the C-terminal domain (CTD) of RNAP II, facilitating the inhibition of transcription. It has also been shown to promote transcription by a mechanism that is likely to involve RNAP II phosphorylation. CDK8 also functions as a stimulus-specific positive coregulator of p53 transcriptional responses. Length = 317

>gnl|CDD|143383 cd07878, STKc_p38beta_MAPK11, Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

 Score = 34.6 bits (79), Expect = 0.003
 Identities = 14/34 (41%), Positives = 25/34 (73%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           + Y+H+ GI+H+DLK  N+ + ++ ++ I DFGL
Sbjct: 131 LKYIHSAGIIHRDLKPSNVAVNEDCELRILDFGL 164

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is widely expressed in tissues and shows more similarity with p38alpha than with the other isoforms. Both are sensitive to pyridinylimidazoles and share some common substrates such as MAPK activated protein kinase 2 (MK2) and the transcription factors ATF2, c-Fos and, ELK-1. p38beta is involved in regulating the activation of the cyclooxygenase-2 promoter and the expression of TGFbeta-induced alpha-smooth muscle cell actin. Length = 343

>gnl|CDD|173638 cd05065, PTKc_EphR_B, Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

 Score = 34.5 bits (79), Expect = 0.003
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLG 55
           M YL     +H+DL ++NI +  N    ++DFGL   S+     TS+   +S LG
Sbjct: 119 MKYLSEMNYVHRDLAARNILVNSNLVCKVSDFGL---SRFLEDDTSDPTYTSSLG 170

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion. EphBRs play important roles in synapse formation and plasticity, spine morphogenesis, axon guidance, and angiogenesis. In the intestinal epithelium, EphBRs are Wnt signaling target genes that control cell compartmentalization. They function as suppressors of color cancer progression. Length = 269

>gnl|CDD|132956 cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 34.8 bits (80), Expect = 0.003
 Identities = 13/33 (39%), Positives = 20/33 (60%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFG 33
           + YLH+  I+H+D+K  NI  +    V + DFG
Sbjct: 117 VEYLHSNMIVHRDIKGANILRDSAGNVKLGDFG 149

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 263

>gnl|CDD|173710 cd05620, STKc_nPKC_delta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

 Score = 34.5 bits (79), Expect = 0.003
 Identities = 12/32 (37%), Positives = 25/32 (78%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           +LH++GI+++DLK  N+ ++++  + I DFG+
Sbjct: 111 FLHSKGIIYRDLKLDNVMLDRDGHIKIADFGM 142

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. It slows down cell proliferation, inducing cell cycle arrest and enhancing cell differentiation. PKC-delta is also involved in the regulation of transcription as well as immune and inflammatory responses. It plays a central role in the genotoxic stress response that leads to DNA damaged-induced apoptosis. Length = 316

>gnl|CDD|173679 cd05588, STKc_aPKC, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

 Score = 34.8 bits (80), Expect = 0.003
 Identities = 12/34 (35%), Positives = 24/34 (70%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           + +LH RGI+++DLK  N+ ++    + +TD+G+
Sbjct: 109 LNFLHERGIIYRDLKLDNVLLDAEGHIKLTDYGM 142

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions including proliferation, migration, apoptosis, polarity maintenance and cytoskeletal regulation. They also play a critical role in the regulation of glucose metabolism and in the pathogenesis of type 2 diabetes. Length = 329

>gnl|CDD|165211 PHA02882, PHA02882, putative serine/threonine kinase; Provisional

 Score = 34.5 bits (79), Expect = 0.003
 Identities = 17/55 (30%), Positives = 29/55 (52%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEG 57
           Y+H  GI H D+K +NI ++ NN+  I D+G+ +   ++  +    K    L  G
Sbjct: 141 YIHEHGISHGDIKPENIMVDGNNRGYIIDYGIASHFIIHGKHIEYSKEQKDLHRG 195

Length = 294

>gnl|CDD|143372 cd07867, STKc_CDC2L6, Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

 Score = 34.7 bits (79), Expect = 0.003
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 13/58 (22%)

Query: 3   YLHARGILHKDLKSKNIFI----EKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGE 56
           YLHA  +LH+DLK  NI +     +  +V I D G   F++L+NS      P  PL +
Sbjct: 123 YLHANWVLHRDLKPANILVMGEGPERGRVKIADMG---FARLFNS------PLKPLAD 171

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as the caspase-processed CDK11(p46). CDK11(p110), CDK11(p58), and CDK11(p46)do not belong to this subfamily. CDC2L6 is an associated protein of Mediator, a multiprotein complex that provides a platform to connect transcriptional and chromatin regulators and cofactors, in order to activate and mediate RNA polymerase II transcription. CDC2L6 is localized mainly in the nucleus amd exerts an opposing effect to CDK8 in VP16-dependent transcriptional activation by being a negative regulator. Length = 317

>gnl|CDD|173743 cd07846, STKc_CDKL2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

 Score = 34.3 bits (79), Expect = 0.003
 Identities = 11/33 (33%), Positives = 22/33 (66%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFG 33
           + + H+  I+H+D+K +NI + ++  V + DFG
Sbjct: 113 IEFCHSHNIIHRDIKPENILVSQSGVVKLCDFG 145

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKIAMRE (NKIATRE in rat), by translocation is associated with mild mental retardation. It has been reported that CDKL3 is lost in leukemic cells having a chromosome arm 5q deletion, and may contribute to the transformed phenotype. Length = 286

>gnl|CDD|173652 cd05100, PTKc_FGFR3, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

 Score = 34.6 bits (79), Expect = 0.003
 Identities = 13/34 (38%), Positives = 24/34 (70%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           M YL ++  +H+DL ++N+ + ++N + I DFGL
Sbjct: 147 MEYLASQKCIHRDLAARNVLVTEDNVMKIADFGL 180

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Many FGFR3 splice variants have been reported with the IIIb and IIIc isoforms being the predominant forms. FGFR3 IIIc is the isoform expressed in chondrocytes, the cells affected in dwarfism, while IIIb is expressed in epithelial cells. FGFR3 ligands include FGF1, FGF2, FGF4, FGF8, FGF9, and FGF23. It is a negative regulator of long bone growth. In the cochlear duct and in the lens, FGFR3 is involved in differentiation while it appears to have a role in cell proliferation in epithelial cells. Germline mutations in FGFR3 are associated with skeletal disorders including several forms of dwarfism. Some missense mutations are associated with multiple myeloma and carcinomas of the bladder and cervix. Overexpression of FGFR3 is found in thyroid carcinoma. Length = 334

>gnl|CDD|173729 cd06617, PKc_MKK3_6, Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

 Score = 34.3 bits (79), Expect = 0.003
 Identities = 13/33 (39%), Positives = 24/33 (72%), Gaps = 1/33 (3%)

Query: 3   YLHAR-GILHKDLKSKNIFIEKNNKVVITDFGL 34
           YLH++  ++H+D+K  N+ I +N +V + DFG+
Sbjct: 118 YLHSKLSVIHRDVKPSNVLINRNGQVKLCDFGI 150

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs that phosphorylate and activate their downstream target, p38 MAPK, on specific threonine and tyrosine residues. MKK3/6 plays roles in the regulation of cell cycle progression, cytokine- and stress-induced apoptosis, oncogenic transformation, and adult tissue regeneration. In addition, MKK6 plays a critical role in osteoclast survival in inflammatory disease while MKK3 is associated with tumor invasion, progression, and poor patient survival in glioma. Length = 283

>gnl|CDD|173708 cd05617, STKc_aPKC_zeta, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

 Score = 34.6 bits (79), Expect = 0.003
 Identities = 12/34 (35%), Positives = 25/34 (73%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           + +LH RGI+++DLK  N+ ++ +  + +TD+G+
Sbjct: 109 LNFLHERGIIYRDLKLDNVLLDADGHIKLTDYGM 142

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways. PKC-zeta also plays a central role in maintaining cell polarity in yeast and mammalian cells. In addition, it affects actin remodeling in muscle cells. Length = 327

>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

 Score = 34.3 bits (79), Expect = 0.003
 Identities = 11/34 (32%), Positives = 22/34 (64%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           M YL  +  +H+DL ++N+ + ++    ++DFGL
Sbjct: 115 MEYLEEKNFVHRDLAARNVLVSEDLVAKVSDFGL 148

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256

>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional

 Score = 34.4 bits (80), Expect = 0.003
 Identities = 17/36 (47%), Positives = 25/36 (69%)

Query: 56  EGKEEEEEKEEEGEEEDNEKEEKEKKEEEEEEEEEE 91
           EG++    +  E EEE+ E+EE+E++EEE EE E E
Sbjct: 223 EGRQGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258

Length = 258

>gnl|CDD|132964 cd06633, STKc_TAO3, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

 Score = 34.6 bits (79), Expect = 0.003
 Identities = 15/44 (34%), Positives = 28/44 (63%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSY 44
           + YLH+  ++H+D+K+ NI + +  +V + DFG  + S   NS+
Sbjct: 134 LAYLHSHNMIHRDIKAGNILLTEPGQVKLADFGSASKSSPANSF 177

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a component of the RAM (regulation of Ace2p activity and cellular morphogenesis) signaling pathway. TAO3 is upregulated in retinal ganglion cells after axotomy, and may play a role in apoptosis. Length = 313

>gnl|CDD|173639 cd05066, PTKc_EphR_A, Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

 Score = 34.5 bits (79), Expect = 0.003
 Identities = 14/34 (41%), Positives = 21/34 (61%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           M YL   G +H+DL ++NI +  N    ++DFGL
Sbjct: 119 MKYLSDMGYVHRDLAARNILVNSNLVCKVSDFGL 152

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. EphARs and ephrin-A ligands are expressed in multiple areas of the developing brain, especially in the retina and tectum. They are part of a system controlling retinotectal mapping. Length = 267

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 34.1 bits (79), Expect = 0.004
 Identities = 23/37 (62%), Positives = 33/37 (89%)

Query: 56  EGKEEEEEKEEEGEEEDNEKEEKEKKEEEEEEEEEEK 92
            GK++EEE+EEE E+++ EKEE+E++ EEE+EEEEEK
Sbjct: 436 AGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEK 472

Length = 482

>gnl|CDD|173684 cd05593, STKc_PKB_gamma, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

 Score = 34.3 bits (78), Expect = 0.004
 Identities = 15/34 (44%), Positives = 26/34 (76%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           + YLH+  I+++DLK +N+ ++K+  + ITDFGL
Sbjct: 108 LDYLHSGKIVYRDLKLENLMLDKDGHIKITDFGL 141

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulated in estrogen-deficient breast cancer cells, androgen-independent prostate cancer cells, and primary ovarian tumors. It acts as a key mediator in the genesis of ovarian cancer. Length = 328

>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

 Score = 34.3 bits (79), Expect = 0.004
 Identities = 12/34 (35%), Positives = 21/34 (61%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           M YL  +  +H+DL ++NI + ++    + DFGL
Sbjct: 117 MAYLEEQNSIHRDLAARNILVGEDLVCKVADFGL 150

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261

>gnl|CDD|133191 cd05060, PTKc_Syk_like, Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

 Score = 34.2 bits (79), Expect = 0.004
 Identities = 11/34 (32%), Positives = 23/34 (67%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           M YL ++  +H+DL ++N+ +   ++  I+DFG+
Sbjct: 108 MAYLESKHFVHRDLAARNVLLVNRHQAKISDFGM 141

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. Syk is important in B-cell receptor (BCR) signaling, while Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Syk also plays a central role in Fc receptor-mediated phagocytosis in the adaptive immune system. Shark is exclusively expressed in ectodermally derived epithelia, and is localized preferentially to the apical surface of the epithelial cells, it may play a role in a signaling pathway for epithelial cell polarity. Length = 257

>gnl|CDD|132942 cd06611, STKc_SLK_like, Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

 Score = 34.3 bits (79), Expect = 0.004
 Identities = 12/31 (38%), Positives = 21/31 (67%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFG 33
           +LH+  ++H+DLK+ NI +  +  V + DFG
Sbjct: 118 FLHSHKVIHRDLKAGNILLTLDGDVKLADFG 148

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. SmSLK is capable of activating the MAPK Jun N-terminal kinase (JNK) pathway in human embryonic kidney (HEK) cells as well as in Xenopus oocytes. It may participate in regulating MAPK cascades during host-parasite interactions. Length = 280

>gnl|CDD|173768 cd08228, STKc_Nek6, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

 Score = 34.2 bits (78), Expect = 0.004
 Identities = 13/35 (37%), Positives = 22/35 (62%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNF 37
           ++H+R ++H+D+K  N+FI     V + D GL  F
Sbjct: 121 HMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRF 155

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase and anaphase, and to the midbody during cytokinesis. Length = 267

>gnl|CDD|173680 cd05589, STKc_PKN, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

 Score = 34.3 bits (79), Expect = 0.004
 Identities = 14/32 (43%), Positives = 20/32 (62%)

Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           YLH   I+++DLK  N+ ++    V I DFGL
Sbjct: 116 YLHENKIVYRDLKLDNLLLDTEGFVKIADFGL 147

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved in many biological processes including cytokeletal regulation, cell adhesion, vesicle transport, glucose transport, regulation of meiotic maturation and embryonic cell cycles, signaling to the nucleus, and tumorigenesis. Length = 324

>gnl|CDD|133192 cd05061, PTKc_InsR, Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

 Score = 34.2 bits (78), Expect = 0.004
 Identities = 13/34 (38%), Positives = 22/34 (64%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           M YL+A+  +H+DL ++N  +  +  V I DFG+
Sbjct: 132 MAYLNAKKFVHRDLAARNCMVAHDFTVKIGDFGM 165

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein metabolism, ion and amino acid transport, cell cycle and proliferation, cell differentiation, gene transcription, and nitric oxide synthesis. Insulin resistance, caused by abnormalities in InsR signaling, has been described in diabetes, hypertension, cardiovascular disease, metabolic syndrome, heart failure, and female infertility. Length = 288

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	93
KOG0600|consensus	560		99.18
KOG0594|consensus	323		99.15
KOG0593|consensus	396		99.08
KOG0595|consensus	429		99.07
KOG0598|consensus	357		99.06
KOG0581|consensus	364		99.05
KOG0583|consensus	370		99.05
KOG0615|consensus	475		99.05
KOG0659|consensus	318		99.03
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	99.02
KOG0198|consensus	313		99.01
KOG0192|consensus	362		99.0
KOG0660|consensus	359		99.0
KOG0193|consensus	678		98.97
KOG0585|consensus	576		98.96
KOG0578|consensus	550		98.95
KOG0592|consensus	604		98.94
PTZ00283	496	serine/threonine protein kinase; Provisional	98.91
KOG0197|consensus	468		98.9
KOG0661|consensus	538		98.9
KOG0663|consensus	419		98.89
PHA02882	294	putative serine/threonine kinase; Provisional	98.89
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	98.89
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	98.89
KOG0575|consensus	592		98.89
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	98.88
PTZ00267	478	NIMA-related protein kinase; Provisional	98.88
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	98.88
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	98.87
KOG0599|consensus	411		98.87
PHA03212	391	serine/threonine kinase US3; Provisional	98.87
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	98.86
KOG0591|consensus	375		98.85
PHA03210	501	serine/threonine kinase US3; Provisional	98.85
KOG0662|consensus	292		98.85
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	98.85
PHA03207	392	serine/threonine kinase US3; Provisional	98.85
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	98.85
PHA03211	461	serine/threonine kinase US3; Provisional	98.85
KOG0658|consensus	364		98.84
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	98.84
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	98.83
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	98.83
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	98.83
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	98.82
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	98.82
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	98.82
KOG1187|consensus	361		98.81
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	98.81
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	98.81
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	98.8
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	98.8
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	98.79
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	98.79
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	98.79
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	98.78
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	98.78
KOG0616|consensus	355		98.78
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	98.78
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	98.78
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	98.78
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	98.77
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	98.77
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	98.77
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	98.76
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	98.76
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	98.76
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	98.75
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	98.75
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	98.75
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	98.75
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	98.75
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	98.75
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	98.75
KOG0614|consensus	732		98.75
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	98.74
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	98.74
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	98.74
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	98.74
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	98.74
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	98.74
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	98.73
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	98.73
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	98.73
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	98.73
KOG0669|consensus	376		98.73
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	98.73
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	98.73
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	98.73
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	98.72
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	98.72
KOG0694|consensus	694		98.72
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	98.72
KOG0582|consensus	516		98.72
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	98.72
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	98.71
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	98.71
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	98.71
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	98.71
KOG0597|consensus	808		98.71
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	98.71
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	98.71
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	98.7
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	98.7
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	98.7
PRK09188	365	serine/threonine protein kinase; Provisional	98.7
KOG0577|consensus	948		98.7
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	98.7
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	98.7
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	98.7
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	98.69
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	98.69
KOG0596|consensus	677		98.69
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	98.69
PTZ00263	329	protein kinase A catalytic subunit; Provisional	98.69
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	98.68
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	98.68
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	98.68
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	98.68
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	98.68
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	98.68
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	98.67
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	98.67
PLN00034	353	mitogen-activated protein kinase kinase; Provision	98.67
KOG1035|consensus	1351		98.67
KOG0984|consensus	282		98.67
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	98.66
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	98.66
PHA03209	357	serine/threonine kinase US3; Provisional	98.66
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	98.66
KOG0201|consensus	467		98.66
KOG0611|consensus	668		98.66
KOG0983|consensus	391		98.66
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	98.66
PTZ00036	440	glycogen synthase kinase; Provisional	98.65
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	98.65
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	98.65
KOG0033|consensus	355		98.65
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	98.65
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	98.65
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	98.65
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	98.64
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	98.63
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	98.63
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	98.63
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	98.63
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	98.63
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	98.62
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	98.62
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	98.62
KOG0664|consensus	449		98.62
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	98.62
KOG0579|consensus	1187		98.62
KOG0587|consensus	953		98.62
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	98.61
KOG0666|consensus	438		98.61
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	98.61
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	98.6
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	98.59
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	98.59
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	98.58
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	98.58
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	98.57
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	98.57
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	98.57
KOG0612|consensus	1317		98.57
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	98.56
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	98.56
PLN03224	507	probable serine/threonine protein kinase; Provisio	98.56
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	98.56
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	98.55
KOG0588|consensus	786		98.55
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	98.55
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	98.55
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	98.54
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	98.54
KOG1026|consensus	774		98.54
KOG0194|consensus	474		98.54
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	98.54
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	98.54
KOG0986|consensus	591		98.54
KOG4721|consensus	904		98.53
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	98.53
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	98.53
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	98.53
KOG0604|consensus	400		98.53
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	98.53
KOG0584|consensus	632		98.53
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	98.53
KOG0589|consensus	426		98.52
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	98.52
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	98.52
KOG1095|consensus	1025		98.52
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	98.52
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	98.52
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	98.51
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	98.51
KOG0586|consensus	596		98.5
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	98.5
KOG0580|consensus	281		98.5
KOG0032|consensus	382		98.5
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	98.5
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	98.5
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	98.5
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	98.49
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	98.49
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	98.49
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	98.49
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	98.49
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	98.49
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	98.49
KOG0605|consensus	550		98.49
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	98.48
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	98.48
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	98.48
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	98.48
PTZ00284	467	protein kinase; Provisional	98.48
KOG4257|consensus	974		98.48
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	98.48
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	98.48
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	98.48
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	98.48
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	98.48
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	98.48
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	98.47
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	98.47
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	98.47
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	98.47
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	98.47
KOG1027|consensus	903		98.47
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	98.46
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	98.45
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	98.45
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	98.45
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	98.45
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	98.45
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	98.45
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	98.45
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	98.45
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	98.45
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	98.44
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	98.44
PLN00181	793	protein SPA1-RELATED; Provisional	98.44
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	98.43
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	98.43
KOG1152|consensus	772		98.43
KOG0665|consensus	369		98.43
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	98.42
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	98.42
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	98.42
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	98.42
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	98.41
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	98.41
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	98.41
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	98.41
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	98.4
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	98.4
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	98.4
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	98.4
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	98.4
KOG0603|consensus	612		98.4
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	98.4
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	98.4
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	98.39
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	98.39
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	98.39
KOG4645|consensus	1509		98.39
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	98.39
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	98.39
KOG0667|consensus	586		98.39
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	98.38
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	98.38
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	98.38
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	98.38
KOG4236|consensus	888		98.38
PRK12274	218	serine/threonine protein kinase; Provisional	98.38
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	98.37
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	98.37
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	98.37
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	98.37
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	98.37
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	98.37
KOG0690|consensus	516		98.37
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	98.36
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	98.36
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	98.36
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	98.35
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	98.35
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	98.35
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	98.35
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	98.35
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	98.35
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	98.35
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	98.35
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	98.35
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	98.35
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	98.34
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	98.34
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	98.34
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	98.34
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	98.34
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	98.33
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	98.33
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	98.33
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	98.33
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	98.33
KOG1006|consensus	361		98.33
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	98.33
PLN00009	294	cyclin-dependent kinase A; Provisional	98.32
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	98.32
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	98.32
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	98.32
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	98.32
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	98.32
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	98.32
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	98.32
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	98.31
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	98.31
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	98.31
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	98.3
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	98.3
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	98.3
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	98.3
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	98.29
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	98.29
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	98.29
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	98.29
KOG0696|consensus	683		98.28
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	98.28
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	98.28
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	98.28
KOG0574|consensus	502		98.27
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	98.27
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	98.27
KOG1094|consensus	807		98.26
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	98.26
KOG0200|consensus	609		98.26
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	98.26
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	98.26
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	98.26
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	98.25
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	98.25
KOG3653|consensus	534		98.25
KOG4250|consensus	732		98.25
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	98.24
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	98.24
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	98.24
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	98.24
KOG0668|consensus	338		98.23
PTZ00024	335	cyclin-dependent protein kinase; Provisional	98.23
KOG1164|consensus	322		98.23
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	98.23
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	98.22
PHA02988	283	hypothetical protein; Provisional	98.22
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	98.22
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	98.22
KOG0196|consensus	996		98.22
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	98.22
KOG0608|consensus	1034		98.21
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	98.21
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	98.21
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	98.21
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	98.21
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	98.2
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	98.2
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	98.2
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	98.19
KOG1989|consensus	738		98.18
KOG1345|consensus	378		98.18
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	98.18
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	98.18
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	98.18
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	98.18
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	98.17
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	98.17
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	98.16
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	98.13
KOG4278|consensus	1157		98.12
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	98.11
KOG0695|consensus	593		98.11
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	98.11
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	98.1
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	98.09
KOG4717|consensus	864		98.09
KOG4279|consensus	1226		98.08
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	98.07
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	98.05
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	98.05
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	98.04
smart00090	237	RIO RIO-like kinase.	98.02
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	98.0
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	97.99
COG0515	384	SPS1 Serine/threonine protein kinase [General func	97.99
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	97.98
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	97.98
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	97.98
PTZ00266	1021	NIMA-related protein kinase; Provisional	97.97
PRK14879	211	serine/threonine protein kinase; Provisional	97.92
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	97.9
KOG0576|consensus	829		97.89
PRK10345	210	hypothetical protein; Provisional	97.89
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	97.88
KOG0590|consensus	601		97.87
PRK09605	535	bifunctional UGMP family protein/serine/threonine	97.85
KOG1163|consensus	341		97.85
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	97.84
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	97.84
KOG1151|consensus	775		97.83
KOG1167|consensus	418		97.8
KOG0610|consensus	459		97.8
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	97.77
KOG0607|consensus	463		97.76
KOG0199|consensus	1039		97.75
KOG2052|consensus	513		97.66
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	97.64
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	97.58
KOG0670|consensus	752		97.58
KOG0671|consensus	415		97.49
KOG1165|consensus	449		97.49
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	97.42
KOG2345|consensus	302		97.37
KOG1025|consensus	1177		97.28
KOG1024|consensus	563		97.24
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	97.23
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	97.21
KOG0606|consensus	1205		97.03
KOG1166|consensus	974		97.02
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	96.9
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	96.88
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	96.8
KOG3087|consensus	229		96.77
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	96.65
KOG4158|consensus	598		96.61
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	96.56
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	96.48
KOG1033|consensus	516		96.47
KOG0590|consensus	601		96.25
KOG1240|consensus	1431		96.05
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	95.99
KOG0603|consensus	612		95.56
KOG1023|consensus	484		94.85
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	93.92
PF06176	229	WaaY: Lipopolysaccharide core biosynthesis protein	93.59
PRK05231	319	homoserine kinase; Provisional	93.34
PRK09902	216	hypothetical protein; Provisional	93.21
cd05155	235	APH_ChoK_like_1 Uncharacterized bacterial proteins	93.13
PF01636	239	APH: Phosphotransferase enzyme family This family	92.99
cd05150	244	APH Aminoglycoside 3'-phosphotransferase (APH). Th	92.59
KOG1290|consensus	590		92.05
KOG0601|consensus	524		91.66
cd05157	235	ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes.	91.32
cd05153	296	HomoserineK_II Homoserine Kinase, type II. Homoser	91.26
TIGR02172	226	Fb_sc_TIGR02172 Fibrobacter succinogenes paralogou	91.01
cd05156	302	ChoK_euk Choline Kinase (ChoK) in eukaryotes. The	90.98
TIGR00938	307	thrB_alt homoserine kinase, Neisseria type. Homose	90.74
COG3173	321	Predicted aminoglycoside phosphotransferase [Gener	89.71
smart00587	196	CHK ZnF_C4 abd HLH domain containing kinases domai	89.64
cd05152	276	MPH2' Macrolide 2'-Phosphotransferase (MPH2'). MPH	89.21
TIGR02906	313	spore_CotS spore coat protein, CotS family. Member	88.84
TIGR02721	256	ycfN_thiK thiamine kinase. Members of this family	88.83
COG0478	304	RIO-like serine/threonine protein kinase fused to	88.74
PRK10271	188	thiK thiamine kinase; Provisional	87.64
PF01633	211	Choline_kinase: Choline/ethanolamine kinase; Inter	85.73
KOG2137|consensus	700		85.28
PLN02236	344	choline kinase	85.14
COG0661	517	AarF Predicted unusual protein kinase [General fun	84.63
TIGR02904	309	spore_ysxE spore coat protein YsxE. Members of thi	83.41
COG2334	331	Putative homoserine kinase type II (protein kinase	83.03
KOG0601|consensus	524		82.75

>KOG0600|consensus

Probab=99.18  E-value=8.9e-12  Score=93.42  Aligned_cols=63  Identities=33%  Similarity=0.452  Sum_probs=49.7

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEEEK   64 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~~~   64 (93)
                      |.|||.++|+||||+..|||++.++.+||+|||||++........-+. ...+.||.|||-...
T Consensus       231 l~~cH~~gvlHRDIK~SNiLidn~G~LKiaDFGLAr~y~~~~~~~~T~-rVvTLWYRpPELLLG  293 (560)
T KOG0600|consen  231 LEYCHSRGVLHRDIKGSNILIDNNGVLKIADFGLARFYTPSGSAPYTS-RVVTLWYRPPELLLG  293 (560)
T ss_pred             HHHHhhcCeeeccccccceEEcCCCCEEeccccceeeccCCCCccccc-ceEEeeccChHHhcC
Confidence            579999999999999999999999999999999998766444332222 234678888886544

>KOG0594|consensus

Probab=99.15  E-value=1.2e-11  Score=88.68  Aligned_cols=63  Identities=27%  Similarity=0.376  Sum_probs=47.8

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEEEKE   65 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~~~~   65 (93)
                      |.|||+++|+||||+|.||+++..+.+|++|||+|+...........  .-.+.||-||+.-..+
T Consensus       133 l~~~H~~~IlHRDLKPQNlLi~~~G~lKlaDFGlAra~~ip~~~yt~--evvTlWYRaPEvLlGs  195 (323)
T KOG0594|consen  133 LAFLHSHGILHRDLKPQNLLISSSGVLKLADFGLARAFSIPMRTYTP--EVVTLWYRAPEVLLGS  195 (323)
T ss_pred             HHHHHhCCeecccCCcceEEECCCCcEeeeccchHHHhcCCcccccc--cEEEeeccCHHHhcCC
Confidence            47999999999999999999999999999999999865533332222  1234567777765443

>KOG0593|consensus

Probab=99.08  E-value=3.5e-11  Score=86.30  Aligned_cols=39  Identities=31%  Similarity=0.594  Sum_probs=36.7

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      +.|||++++||||++|.||+++.++.+||+|||+|+...
T Consensus       114 i~~cHk~n~IHRDIKPENILit~~gvvKLCDFGFAR~L~  152 (396)
T KOG0593|consen  114 IHFCHKNNCIHRDIKPENILITQNGVVKLCDFGFARTLS  152 (396)
T ss_pred             hhhhhhcCeecccCChhheEEecCCcEEeccchhhHhhc
Confidence            468999999999999999999999999999999998766

>KOG0595|consensus

Probab=99.07  E-value=4.1e-11  Score=87.92  Aligned_cols=59  Identities=31%  Similarity=0.480  Sum_probs=44.2

Q ss_pred             CccchhCCccccCCCCCceEEecC------CcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKN------NKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~------~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.+||.++||||||||.|||++..      ..+|++|||+|+......  ......++|+|+||+--
T Consensus       122 lq~L~~~~IiHRDLKPQNiLLs~~~~~~~~~~LKIADFGfAR~L~~~~--~a~tlcGSplYMAPEV~  186 (429)
T KOG0595|consen  122 LQFLHENNIIHRDLKPQNILLSTTARNDTSPVLKIADFGFARFLQPGS--MAETLCGSPLYMAPEVI  186 (429)
T ss_pred             HHHHHHCCeeeccCCcceEEeccCCCCCCCceEEecccchhhhCCchh--HHHHhhCCccccCHHHH
Confidence            468999999999999999999764      468999999998765322  22333456667776654

>KOG0598|consensus

Probab=99.06  E-value=6.8e-11  Score=85.55  Aligned_cols=62  Identities=27%  Similarity=0.400  Sum_probs=48.6

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEEEK   64 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~~~   64 (93)
                      |.|||+.+||||||+|.|||++..+.++|+|||+++.....  .....+++++.-|++||.-..
T Consensus       138 L~~LH~~gIiyRDlKPENILLd~~GHi~LtDFgL~k~~~~~--~~~t~tfcGT~eYmAPEil~~  199 (357)
T KOG0598|consen  138 LGYLHSKGIIYRDLKPENILLDEQGHIKLTDFGLCKEDLKD--GDATRTFCGTPEYMAPEILLG  199 (357)
T ss_pred             HHHHHhCCeeeccCCHHHeeecCCCcEEEeccccchhcccC--CCccccccCCccccChHHHhc
Confidence            46999999999999999999999999999999998754322  223444677777777765543

>KOG0581|consensus

Probab=99.05  E-value=5.7e-11  Score=86.07  Aligned_cols=61  Identities=26%  Similarity=0.395  Sum_probs=46.8

Q ss_pred             Cccchh-CCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhhhhh
Q psy700            1 MGYLHA-RGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEEEKE   65 (93)
Q Consensus         1 l~~lhs-~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~~~~   65 (93)
                      |.|||. ++|||||+||.|+|++..+.+||+|||.+...-..    ...++-++..|++||+-...
T Consensus       191 L~YLh~~~~IIHRDIKPsNlLvNskGeVKicDFGVS~~lvnS----~a~tfvGT~~YMsPERi~g~  252 (364)
T KOG0581|consen  191 LSYLHEERKIIHRDIKPSNLLVNSKGEVKICDFGVSGILVNS----IANTFVGTSAYMSPERISGE  252 (364)
T ss_pred             HHHHhhccCeeeccCCHHHeeeccCCCEEeccccccHHhhhh----hcccccccccccChhhhcCC
Confidence            469995 89999999999999999999999999998765433    22334456677777765443

>KOG0583|consensus

Probab=99.05  E-value=1.1e-10  Score=85.34  Aligned_cols=39  Identities=44%  Similarity=0.856  Sum_probs=35.9

Q ss_pred             CccchhCCccccCCCCCceEEecC-CcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKN-NKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~-~~~kl~dfgla~~~~   39 (93)
                      +.|||+++|+|||||+.|++++.+ ..+||+|||++....
T Consensus       133 v~y~H~~gi~HRDLK~ENilld~~~~~~Kl~DFG~s~~~~  172 (370)
T KOG0583|consen  133 VAYCHSRGIVHRDLKPENILLDGNEGNLKLSDFGLSAISP  172 (370)
T ss_pred             HHHHHhCCEeeCCCCHHHEEecCCCCCEEEeccccccccC
Confidence            469999999999999999999988 999999999987663

>KOG0615|consensus

Probab=99.05  E-value=8.3e-11  Score=86.71  Aligned_cols=58  Identities=31%  Similarity=0.446  Sum_probs=43.7

Q ss_pred             CccchhCCccccCCCCCceEEecC---CcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKN---NKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~---~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      +.|||++||+||||+|.|||+..+   ..+|+.|||+|++.....   ...+++++..|-+||-
T Consensus       289 vkYLH~~GI~HRDiKPeNILl~~~~e~~llKItDFGlAK~~g~~s---fm~TlCGTpsYvAPEV  349 (475)
T KOG0615|consen  289 VKYLHSQGIIHRDIKPENILLSNDAEDCLLKITDFGLAKVSGEGS---FMKTLCGTPSYVAPEV  349 (475)
T ss_pred             HHHHHHcCcccccCCcceEEeccCCcceEEEecccchhhccccce---ehhhhcCCccccChhh
Confidence            469999999999999999999876   678999999998775222   3344455555555543

>KOG0659|consensus

Probab=99.03  E-value=1.1e-10  Score=82.33  Aligned_cols=59  Identities=31%  Similarity=0.456  Sum_probs=45.9

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      +.|||++.|+|||++|.|++++.++.+|++|||+|+.+..........  -.+.||.+||-
T Consensus       114 l~y~H~~~IlHRDlKPnNLLis~~g~lKiADFGLAr~f~~p~~~~~~~--V~TRWYRAPEL  172 (318)
T KOG0659|consen  114 LAYCHSKWILHRDLKPNNLLISSDGQLKIADFGLARFFGSPNRIQTHQ--VVTRWYRAPEL  172 (318)
T ss_pred             HHHHHhhhhhcccCCccceEEcCCCcEEeecccchhccCCCCcccccc--eeeeeccChHH
Confidence            479999999999999999999999999999999999876444333322  33456666653

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=99.02  E-value=2.1e-10  Score=80.99  Aligned_cols=61  Identities=33%  Similarity=0.449  Sum_probs=44.5

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||+++++|+||+|.||+++.+..++|+|||+++................+..|++||.
T Consensus       187 L~~LH~~~ivHrDiKp~Nil~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~  247 (338)
T cd05102         187 MEFLASRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGSARLPLKWMAPES  247 (338)
T ss_pred             HHHHHHCCEECCCCccceEEEcCCCcEEEeecccccccccCcchhcccCCCCCccccCcHH
Confidence            4689999999999999999999889999999999875443332222233334455655554

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>KOG0198|consensus

Probab=99.01  E-value=2.4e-10  Score=82.04  Aligned_cols=62  Identities=31%  Similarity=0.460  Sum_probs=44.7

Q ss_pred             CccchhCCccccCCCCCceEEec-CCcEEEeeccccccccc--cCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEK-NNKVVITDFGLFNFSKL--YNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~-~~~~kl~dfgla~~~~~--~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||++.|||++. ++.+||+|||++.....  ..........++|.+++|+...
T Consensus       130 L~ylHs~g~vH~DiK~~NiLl~~~~~~~KlaDFG~a~~~~~~~~~~~~~~~~~Gtp~~maPEvi~  194 (313)
T KOG0198|consen  130 LAYLHSKGIVHCDIKPANILLDPSNGDVKLADFGLAKKLESKGTKSDSELSVQGTPNYMAPEVIR  194 (313)
T ss_pred             HHHHHhCCEeccCcccceEEEeCCCCeEEeccCccccccccccccccccccccCCccccCchhhc
Confidence            47999999999999999999998 68999999999875542  1111223334455566665443

>KOG0192|consensus

Probab=99.00  E-value=2.5e-10  Score=83.27  Aligned_cols=61  Identities=31%  Similarity=0.451  Sum_probs=44.1

Q ss_pred             CccchhCC-ccccCCCCCceEEecCC-cEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARG-ILHKDLKSKNIFIEKNN-KVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~-iihrdlk~~nill~~~~-~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+.+ |||+||++.|||++... .+||+|||+++...... .......+++.|+||+-..
T Consensus       155 m~YLH~~~~iIHrDLK~~NiLv~~~~~~~KI~DFGlsr~~~~~~-~~~~~~~GT~~wMAPEv~~  217 (362)
T KOG0192|consen  155 MEYLHSEGPIIHRDLKSDNILVDLKGKTLKIADFGLSREKVISK-TSMTSVAGTYRWMAPEVLR  217 (362)
T ss_pred             HHHHhcCCCeeecccChhhEEEcCCCCEEEECCCccceeecccc-ccccCCCCCccccChhhhc
Confidence            56999999 99999999999999886 99999999997655322 1122233444555555443

>KOG0660|consensus

Probab=99.00  E-value=2e-10  Score=83.06  Aligned_cols=62  Identities=21%  Similarity=0.340  Sum_probs=45.9

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|+|+.+|+||||+|.|++++.+..+|++|||+|+..............-.+.||-+|+--
T Consensus       138 LKyiHSAnViHRDLKPsNll~n~~c~lKI~DFGLAR~~~~~~~~~~mTeYVaTRWYRAPEll  199 (359)
T KOG0660|consen  138 LKYIHSANVIHRDLKPSNLLLNADCDLKICDFGLARYLDKFFEDGFMTEYVATRWYRAPELL  199 (359)
T ss_pred             cchhhcccccccccchhheeeccCCCEEeccccceeeccccCcccchhcceeeeeecCHHHH
Confidence            57999999999999999999999999999999999876543112221222345566666544

>KOG0193|consensus

Probab=98.97  E-value=3.1e-10  Score=86.75  Aligned_cols=64  Identities=39%  Similarity=0.589  Sum_probs=48.3

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCC-CCChhhhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPL-GEGKEEEEEK   64 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~-~~~p~e~~~~   64 (93)
                      |.|||+++|||+||++.||++..+..++|.||||+................+.+ |+||+-..+.
T Consensus       501 M~YLHAK~IIHrDLKSnNIFl~~~~kVkIgDFGLatvk~~w~g~~q~~qp~gsilwmAPEvIRmq  565 (678)
T KOG0193|consen  501 MDYLHAKNIIHRDLKSNNIFLHEDLKVKIGDFGLATVKTRWSGEQQLEQPHGSLLWMAPEVIRMQ  565 (678)
T ss_pred             hhhhhhhhhhhhhccccceEEccCCcEEEecccceeeeeeeccccccCCCccchhhhcHHHHhhc
Confidence            579999999999999999999998999999999987666554444444444445 5555544433

>KOG0585|consensus

Probab=98.96  E-value=2.1e-10  Score=85.93  Aligned_cols=61  Identities=28%  Similarity=0.413  Sum_probs=46.8

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCC----CCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSY----TSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~----~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||.++||||||+|.|+|++..+.+||+|||.+..+......    ....+.++|..+||+.-
T Consensus       223 LEYLH~QgiiHRDIKPsNLLl~~~g~VKIsDFGVs~~~~~~~~~~~d~~L~~tvGTPAF~APE~c  287 (576)
T KOG0585|consen  223 LEYLHYQGIIHRDIKPSNLLLSSDGTVKISDFGVSNEFPQGSDEGSDDQLSRTVGTPAFFAPELC  287 (576)
T ss_pred             HHHHHhcCeeccccchhheEEcCCCcEEeeccceeeecccCCccccHHHHhhcCCCccccchHhh
Confidence            57999999999999999999999999999999998765322111    12236677777777643

>KOG0578|consensus

Probab=98.95  E-value=5.5e-10  Score=84.42  Aligned_cols=60  Identities=33%  Similarity=0.519  Sum_probs=45.1

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||.++|+||||+..||++..++.+||.|||++........ ....-.+.|.|++|+-.
T Consensus       382 L~fLH~~gIiHrDIKSDnILL~~~g~vKltDFGFcaqi~~~~~-KR~TmVGTPYWMAPEVv  441 (550)
T KOG0578|consen  382 LKFLHARGIIHRDIKSDNILLTMDGSVKLTDFGFCAQISEEQS-KRSTMVGTPYWMAPEVV  441 (550)
T ss_pred             HHHHHhcceeeeccccceeEeccCCcEEEeeeeeeeccccccC-ccccccCCCCccchhhh
Confidence            5799999999999999999999999999999998765543332 23333455556555543

>KOG0592|consensus

Probab=98.94  E-value=3.8e-10  Score=85.41  Aligned_cols=43  Identities=40%  Similarity=0.750  Sum_probs=38.5

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCC
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNS   43 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~   43 (93)
                      |.|||++|||||||+|.|||++.++.++|.|||.|+.+.....
T Consensus       187 leylH~~GIIHRDlKPENILLd~dmhikITDFGsAK~l~~~~~  229 (604)
T KOG0592|consen  187 LEYLHSNGIIHRDLKPENILLDKDGHIKITDFGSAKILSPSQK  229 (604)
T ss_pred             HHHHHhcCceeccCChhheeEcCCCcEEEeeccccccCChhhc
Confidence            4699999999999999999999999999999999987764443

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=98.91  E-value=7.1e-10  Score=83.27  Aligned_cols=62  Identities=23%  Similarity=0.226  Sum_probs=45.3

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|+|+.+++|+||+|.||+++.++.++|+|||+++...............++.+|++||.-
T Consensus       156 L~~lH~~~IiHrDLKP~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~Gt~~Y~aPE~~  217 (496)
T PTZ00283        156 VHHVHSKHMIHRDIKSANILLCSNGLVKLGDFGFSKMYAATVSDDVGRTFCGTPYYVAPEIW  217 (496)
T ss_pred             HHHHHhCCEecCCCCHHHEEEeCCCCEEEEecccCeeccccccccccccccCCcceeCHHHh
Confidence            46899999999999999999999999999999998764432222222233445566666643

>KOG0197|consensus

Probab=98.90  E-value=5.9e-10  Score=83.35  Aligned_cols=60  Identities=32%  Similarity=0.566  Sum_probs=48.6

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.||.++++|||||..+|||++.+..+|++|||+|+... ...+.......+|+-+.+||.
T Consensus       316 M~YLes~~~IHRDLAARNiLV~~~~~vKIsDFGLAr~~~-d~~Y~~~~~~kfPIkWtAPEa  375 (468)
T KOG0197|consen  316 MAYLESKNYIHRDLAARNILVDEDLVVKISDFGLARLIG-DDEYTASEGGKFPIKWTAPEA  375 (468)
T ss_pred             HHHHHhCCccchhhhhhheeeccCceEEEcccccccccC-CCceeecCCCCCCceecCHHH
Confidence            579999999999999999999999999999999999433 445556666778885554443

>KOG0661|consensus

Probab=98.90  E-value=7.2e-10  Score=82.93  Aligned_cols=60  Identities=32%  Similarity=0.413  Sum_probs=44.3

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEEE   63 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~~   63 (93)
                      |.|+|.+|++|||++|.|||+.....+||+|||+|+-......+  +...+ +.||.+||-..
T Consensus       123 L~hiHk~GfFHRDlKPENiLi~~~~~iKiaDFGLARev~SkpPY--TeYVS-TRWYRAPEvLL  182 (538)
T KOG0661|consen  123 LAHIHKHGFFHRDLKPENILISGNDVIKIADFGLAREVRSKPPY--TEYVS-TRWYRAPEVLL  182 (538)
T ss_pred             HHHHHhcCcccccCChhheEecccceeEecccccccccccCCCc--chhhh-cccccchHHhh
Confidence            57899999999999999999998888999999999765432222  23333 45555555443

>KOG0663|consensus

Probab=98.89  E-value=4.7e-10  Score=81.33  Aligned_cols=60  Identities=27%  Similarity=0.249  Sum_probs=46.6

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      +.|||.+.|+||||+++|++++..+.+|++|||+|+.......  .......+.||.||+-.
T Consensus       190 lk~lH~~wilHRDLK~SNLLm~~~G~lKiaDFGLAR~ygsp~k--~~T~lVVTLWYRaPELL  249 (419)
T KOG0663|consen  190 LKHLHDNWILHRDLKTSNLLLSHKGILKIADFGLAREYGSPLK--PYTPLVVTLWYRAPELL  249 (419)
T ss_pred             HHHHhhceeEecccchhheeeccCCcEEecccchhhhhcCCcc--cCcceEEEeeecCHHHh
Confidence            4699999999999999999999999999999999986543321  22223446778777754

>PHA02882 putative serine/threonine kinase; Provisional

Probab=98.89  E-value=1.2e-09  Score=76.12  Aligned_cols=39  Identities=36%  Similarity=0.693  Sum_probs=35.2

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||+.+++||||+|.||+++....++|+|||+|+...
T Consensus       139 l~~lH~~~iiHrDiKp~Nill~~~~~~~l~DFGla~~~~  177 (294)
T PHA02882        139 LEYIHEHGISHGDIKPENIMVDGNNRGYIIDYGIASHFI  177 (294)
T ss_pred             HHHHHhCCeecCCCCHHHEEEcCCCcEEEEEcCCceeec
Confidence            468999999999999999999988899999999987653

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=98.89  E-value=9.4e-10  Score=76.58  Aligned_cols=61  Identities=25%  Similarity=0.344  Sum_probs=43.8

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||+.+++|++|+|.||+++..+.++|+|||+++................+..|++|+.
T Consensus       151 l~~lH~~~ivH~dlkp~Nill~~~~~~kl~DfG~~~~~~~~~~~~~~~~~~~~~~y~aPE~  211 (304)
T cd05096         151 MKYLSSLNFVHRDLATRNCLVGENLTIKIADFGMSRNLYAGDYYRIQGRAVLPIRWMAWEC  211 (304)
T ss_pred             HHHHHHCCccccCcchhheEEcCCccEEECCCccceecccCceeEecCcCCCCccccCHHH
Confidence            4689999999999999999999999999999999865432222222223333555566653

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=98.89  E-value=9.5e-10  Score=79.49  Aligned_cols=61  Identities=18%  Similarity=0.306  Sum_probs=44.2

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||+|.||+++..+.++|+|||++.......... .....++.+|++||.-
T Consensus       155 L~~LH~~~IvHrDLKp~NILl~~~~~~kL~DFG~a~~~~~~~~~~-~~~~~gt~~Y~aPE~~  215 (370)
T cd05621         155 LDAIHSMGLIHRDVKPDNMLLDKHGHLKLADFGTCMKMDETGMVR-CDTAVGTPDYISPEVL  215 (370)
T ss_pred             HHHHHHCCeEecCCCHHHEEECCCCCEEEEecccceecccCCcee-cccCCCCcccCCHHHH
Confidence            468999999999999999999999999999999987543222211 1223345556666643

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>KOG0575|consensus

Probab=98.89  E-value=8.4e-10  Score=84.04  Aligned_cols=60  Identities=32%  Similarity=0.438  Sum_probs=45.9

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++||||||+..|++++.+..+|++|||+|...-...-  ...+.+++..|.+||..
T Consensus       131 lkYLH~~~IiHRDLKLGNlfL~~~~~VKIgDFGLAt~le~~~E--rk~TlCGTPNYIAPEVl  190 (592)
T KOG0575|consen  131 LKYLHSLGIIHRDLKLGNLFLNENMNVKIGDFGLATQLEYDGE--RKKTLCGTPNYIAPEVL  190 (592)
T ss_pred             HHHHHhcCceecccchhheeecCcCcEEecccceeeeecCccc--ccceecCCCcccChhHh
Confidence            4699999999999999999999999999999999976653322  23334555656555543

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=98.88  E-value=1.2e-09  Score=74.98  Aligned_cols=62  Identities=27%  Similarity=0.436  Sum_probs=44.9

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|++|+|.||++.....++|+|||+++................+..|++|+.-
T Consensus       122 L~~lH~~~iiH~dlkp~Nil~~~~~~~kL~dfG~~~~~~~~~~~~~~~~~~~~~~y~~PE~~  183 (279)
T cd05109         122 MSYLEEVRLVHRDLAARNVLVKSPNHVKITDFGLARLLDIDETEYHADGGKVPIKWMALESI  183 (279)
T ss_pred             HHHHHHCCeeccccccceEEEcCCCcEEECCCCceeecccccceeecCCCccchhhCCHHHh
Confidence            46899999999999999999998888999999998765433322222222234556666654

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=98.88  E-value=1.1e-09  Score=81.62  Aligned_cols=62  Identities=24%  Similarity=0.235  Sum_probs=45.4

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||+|.||+++..+.++|+|||++................++.+|++||..
T Consensus       182 L~~lH~~~ivHrDlkp~NIll~~~~~~kL~DFgla~~~~~~~~~~~~~~~~gt~~y~aPE~~  243 (478)
T PTZ00267        182 LDEVHSRKMMHRDLKSANIFLMPTGIIKLGDFGFSKQYSDSVSLDVASSFCGTPYYLAPELW  243 (478)
T ss_pred             HHHHHhCCEEECCcCHHhEEECCCCcEEEEeCcCceecCCccccccccccCCCccccCHhHh
Confidence            46899999999999999999999999999999998765432222222333445666666643

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=98.88  E-value=1.1e-09  Score=77.36  Aligned_cols=61  Identities=26%  Similarity=0.291  Sum_probs=43.9

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||..+++|+||++.||+++.++.++|+|||++........... ....++.+|++||.-
T Consensus       118 l~~lH~~~ivHrDlkp~Nili~~~~~~kl~DfG~~~~~~~~~~~~~-~~~~gt~~y~aPE~~  178 (332)
T cd05614         118 LEHLHKLGIVYRDIKLENILLDSEGHVVLTDFGLSKEFLSEEKERT-YSFCGTIEYMAPEII  178 (332)
T ss_pred             HHHHHHCCcEecCCCHHHeEECCCCCEEEeeCcCCccccccCCCcc-ccccCCccccCHHHh
Confidence            4689999999999999999999999999999999865432222111 122345556666543

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=98.87  E-value=1.2e-09  Score=76.63  Aligned_cols=61  Identities=30%  Similarity=0.446  Sum_probs=43.9

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||+++++|++|++.||+++.+..++|+|||+++................+..|++|+.
T Consensus       122 L~~LH~~~iiH~dlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~apE~  182 (316)
T cd05108         122 MNYLEERRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGADEKEYHAEGGKVPIKWMALES  182 (316)
T ss_pred             HHHHHhcCeeccccchhheEecCCCcEEEccccccccccCCCcceeccCCccceeecChHH
Confidence            4689999999999999999999989999999999876543332222222233445555554

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>KOG0599|consensus

Probab=98.87  E-value=6e-10  Score=79.46  Aligned_cols=57  Identities=33%  Similarity=0.497  Sum_probs=44.8

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEE   60 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e   60 (93)
                      +.|||.++|+||||+|.||+++.+.++++.|||+|+...+......   .+++.||.+|+
T Consensus       136 VeylHa~~IVHRDLKpENILlddn~~i~isDFGFa~~l~~GekLre---lCGTPgYLAPE  192 (411)
T KOG0599|consen  136 VEYLHARNIVHRDLKPENILLDDNMNIKISDFGFACQLEPGEKLRE---LCGTPGYLAPE  192 (411)
T ss_pred             HHHHHHhhhhhcccChhheeeccccceEEeccceeeccCCchhHHH---hcCCCcccChh
Confidence            3689999999999999999999999999999999987665554332   34455555554

>PHA03212 serine/threonine kinase US3; Provisional

Probab=98.87  E-value=1.6e-09  Score=78.99  Aligned_cols=38  Identities=42%  Similarity=0.815  Sum_probs=34.7

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|||+.+++|+||+|.||+++..+.++|+|||++...
T Consensus       195 L~ylH~~~IvHrDiKP~NIll~~~~~vkL~DFG~a~~~  232 (391)
T PHA03212        195 IQYLHENRIIHRDIKAENIFINHPGDVCLGDFGAACFP  232 (391)
T ss_pred             HHHHHhCCcccCCCChHhEEEcCCCCEEEEeCCccccc
Confidence            46899999999999999999999899999999998643

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=98.86  E-value=1.4e-09  Score=78.52  Aligned_cols=61  Identities=18%  Similarity=0.296  Sum_probs=44.3

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|++|+|.||+++..+.++|+|||++.......... .....++..|++||.-
T Consensus       155 L~~LH~~~ivHrDLkp~NIll~~~~~ikL~DfG~a~~~~~~~~~~-~~~~~gt~~y~aPE~l  215 (371)
T cd05622         155 LDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMVR-CDTAVGTPDYISPEVL  215 (371)
T ss_pred             HHHHHHCCEEeCCCCHHHEEECCCCCEEEEeCCceeEcCcCCccc-ccCcccCccccCHHHH
Confidence            468999999999999999999999999999999987543222111 1223345556666643

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>KOG0591|consensus

Probab=98.85  E-value=7.3e-10  Score=79.04  Aligned_cols=58  Identities=28%  Similarity=0.357  Sum_probs=42.3

Q ss_pred             ccchh--CC--ccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            2 GYLHA--RG--ILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         2 ~~lhs--~~--iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      .+||.  .+  |+||||+|.||+++.++.+||.|||+++++.... +......++| +|+.|+.
T Consensus       138 ~~cH~~~~r~~VmHRDIKPaNIFl~~~gvvKLGDfGL~r~l~s~~-tfA~S~VGTP-yYMSPE~  199 (375)
T KOG0591|consen  138 YHCHSKIPRGTVMHRDIKPANIFLTANGVVKLGDFGLGRFLSSKT-TFAHSLVGTP-YYMSPER  199 (375)
T ss_pred             HHHhccccccceeeccCcchheEEcCCCceeeccchhHhHhcchh-HHHHhhcCCC-cccCHHH
Confidence            45776  33  9999999999999999999999999998776333 3334444544 5555544

>PHA03210 serine/threonine kinase US3; Provisional

Probab=98.85  E-value=1.6e-09  Score=81.43  Aligned_cols=60  Identities=23%  Similarity=0.371  Sum_probs=43.4

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||+++++|+||+|.||+++..+.++|+|||++............ ...++..|++||.
T Consensus       280 L~yLH~~gIiHrDLKP~NILl~~~~~vkL~DFGla~~~~~~~~~~~~-~~~gt~~y~aPE~  339 (501)
T PHA03210        280 VEYIHDKKLIHRDIKLENIFLNCDGKIVLGDFGTAMPFEKEREAFDY-GWVGTVATNSPEI  339 (501)
T ss_pred             HHHHHhCCeecCCCCHHHEEECCCCCEEEEeCCCceecCcccccccc-cccCCcCCCCchh
Confidence            46899999999999999999999999999999998765432222221 2233455555554

>KOG0662|consensus

Probab=98.85  E-value=9.8e-10  Score=74.64  Aligned_cols=58  Identities=29%  Similarity=0.497  Sum_probs=45.7

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEE   60 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e   60 (93)
                      +.|+|+++++||+++|.|++++.++.++++|||+++.++....+....  -.+.||.||.
T Consensus       114 l~fchshnvlhrdlkpqnllin~ngelkladfglarafgipvrcysae--vvtlwyrppd  171 (292)
T KOG0662|consen  114 LGFCHSHNVLHRDLKPQNLLINRNGELKLADFGLARAFGIPVRCYSAE--VVTLWYRPPD  171 (292)
T ss_pred             hhhhhhhhhhhccCCcceEEeccCCcEEecccchhhhcCCceEeeece--eeeeeccCcc
Confidence            578999999999999999999999999999999998776444333222  2346666665

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=98.85  E-value=1.2e-09  Score=75.20  Aligned_cols=58  Identities=24%  Similarity=0.436  Sum_probs=43.0

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||+++++|++|+|.||+++.++.++|+|||++.......   ......++..|++||.
T Consensus       123 L~~lH~~~iiH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~---~~~~~~~~~~y~aPE~  180 (290)
T cd07862         123 LDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQM---ALTSVVVTLWYRAPEV  180 (290)
T ss_pred             HHHHHHCCeeeCCCCHHHEEEcCCCCEEEccccceEeccCCc---ccccccccccccChHH
Confidence            468999999999999999999999999999999986543221   1222234555666654

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>PHA03207 serine/threonine kinase US3; Provisional

Probab=98.85  E-value=1.5e-09  Score=78.77  Aligned_cols=61  Identities=31%  Similarity=0.476  Sum_probs=44.3

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||.++++|+||++.||+++..+.++|+|||++................++..|++|+.
T Consensus       198 L~~LH~~givHrDlkp~Nill~~~~~~~l~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~  258 (392)
T PHA03207        198 LAYLHGRGIIHRDVKTENIFLDEPENAVLGDFGAACKLDAHPDTPQCYGWSGTLETNSPEL  258 (392)
T ss_pred             HHHHHHCCccccCCCHHHEEEcCCCCEEEccCccccccCcccccccccccccccCccCHhH
Confidence            4689999999999999999999999999999999865543332222222334555555553

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=98.85  E-value=2.1e-09  Score=76.61  Aligned_cols=60  Identities=33%  Similarity=0.458  Sum_probs=44.4

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEE   60 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e   60 (93)
                      |.|||.++++|++++|.||+++.+..++|+|||++................++..|++|+
T Consensus       186 L~~lH~~~ivHrDikp~Nill~~~~~vkL~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE  245 (337)
T cd05054         186 MEFLASRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPE  245 (337)
T ss_pred             HHHHHhCCeecCCCCcceEEEeCCCcEEEeccccchhcccCcchhhccCCCCCccccCcH
Confidence            468999999999999999999988899999999987654333222233333455565665

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>PHA03211 serine/threonine kinase US3; Provisional

Probab=98.85  E-value=1.5e-09  Score=81.23  Aligned_cols=62  Identities=23%  Similarity=0.435  Sum_probs=45.0

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||.++++|+||++.||+++....++|+|||+++...............++..|++|+.-
T Consensus       273 L~yLH~~gIvHrDLKP~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~~GT~~Y~APE~~  334 (461)
T PHA03211        273 IDYIHGEGIIHRDIKTENVLVNGPEDICLGDFGAACFARGSWSTPFHYGIAGTVDTNAPEVL  334 (461)
T ss_pred             HHHHHHCCEEECcCCHHHEEECCCCCEEEcccCCceecccccccccccccCCCcCCcCHHHH
Confidence            46899999999999999999999899999999998765332222222233345666666643

>KOG0658|consensus

Probab=98.84  E-value=1.3e-09  Score=78.98  Aligned_cols=39  Identities=33%  Similarity=0.705  Sum_probs=34.8

Q ss_pred             CccchhCCccccCCCCCceEEecC-CcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKN-NKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~-~~~kl~dfgla~~~~   39 (93)
                      |.|||..+|+||||||.|+|++.. +.+||+|||.|+..-
T Consensus       138 l~yLh~~~IcHRDIKPqNlLvD~~tg~LKicDFGSAK~L~  177 (364)
T KOG0658|consen  138 LAYLHSHGICHRDIKPQNLLVDPDTGVLKICDFGSAKVLV  177 (364)
T ss_pred             HHHHHhcCcccCCCChheEEEcCCCCeEEeccCCcceeec
Confidence            479999999999999999999855 789999999997654

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=98.84  E-value=2.5e-09  Score=73.74  Aligned_cols=62  Identities=23%  Similarity=0.347  Sum_probs=45.7

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||.++++|+++++.||+++.+..++|+|||+++...............+++.|++|+.-
T Consensus       122 l~~lH~~~iiH~dlkp~nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~pE~~  183 (279)
T cd05111         122 MYYLEEHRMVHRNLAARNILLKSDSIVQIADFGVADLLYPDDKKYFYSEHKTPIKWMALESI  183 (279)
T ss_pred             HHHHHHCCEeccccCcceEEEcCCCcEEEcCCccceeccCCCcccccCCCCCcccccCHHHh
Confidence            46899999999999999999999999999999998765433222222333455666666643

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=98.83  E-value=2.1e-09  Score=77.75  Aligned_cols=61  Identities=21%  Similarity=0.372  Sum_probs=43.5

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||+++++|++|+|.||+++.+..++|+|||+++................+..|++||.
T Consensus       225 L~yLH~~giiHrDLkp~Nil~~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~  285 (374)
T cd05106         225 MDFLASKNCIHRDVAARNVLLTDGRVAKICDFGLARDIMNDSNYVVKGNARLPVKWMAPES  285 (374)
T ss_pred             HHHHHHCCEEeccCchheEEEeCCCeEEEeeceeeeeccCCcceeeccCCCCccceeCHHH
Confidence            4689999999999999999999888999999999865432222222222233455666654

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=98.83  E-value=1.7e-09  Score=73.80  Aligned_cols=61  Identities=25%  Similarity=0.284  Sum_probs=43.2

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||+++++|++++|.||+++.++.++++|||++.................+..|.+|+.
T Consensus       113 l~~lH~~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~  173 (269)
T cd05042         113 LLWLHQADFIHSDLALRNCQLTADLSVKIGDYGLALEQYPEDYYITKDCHAVPLRWLAPEL  173 (269)
T ss_pred             HHHHHhcCEecccccHhheEecCCCcEEEeccccccccccchheeccCCCCCcccccCHHH
Confidence            4689999999999999999999999999999999764332221112222233455566654

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=98.83  E-value=1.8e-09  Score=74.19  Aligned_cols=62  Identities=26%  Similarity=0.378  Sum_probs=43.7

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|+|..+++|++++|.||++..+..++|+|||+++................+..|++|+.-
T Consensus       137 L~~lH~~gi~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  198 (283)
T cd05091         137 MEFLSSHHVVHKDLATRNVLVFDKLNVKISDLGLFREVYAADYYKLMGNSLLPIRWMSPEAI  198 (283)
T ss_pred             HHHHHHcCccccccchhheEecCCCceEecccccccccccchheeeccCccCCccccCHHHH
Confidence            46899999999999999999998889999999997754332222222222334456666543

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=98.82  E-value=2.8e-09  Score=77.04  Aligned_cols=61  Identities=25%  Similarity=0.410  Sum_probs=44.5

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||+.+++|++|+|.||+++....++|+|||++.................+..|++||.
T Consensus       227 l~~lH~~~ivH~Dlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~  287 (375)
T cd05104         227 MSFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIRNDSNYVVKGNARLPVKWMAPES  287 (375)
T ss_pred             HHHHHHCCeeccCCchhhEEEECCCcEEEecCccceeccCcccccccCCCCCCcceeChhH
Confidence            4689999999999999999999888899999999875543332222222334555666664

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=98.82  E-value=2e-09  Score=75.91  Aligned_cols=59  Identities=24%  Similarity=0.381  Sum_probs=43.2

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||..+++|++|++.||+++.++.++|+|||++.......  .......++.+|++||.
T Consensus       109 l~~LH~~~ivH~dlkp~Nill~~~~~~kL~Dfg~a~~~~~~~--~~~~~~~gt~~y~aPE~  167 (316)
T cd05592         109 LQFLHKKGIIYRDLKLDNVLLDKDGHIKIADFGMCKENMNGE--GKASTFCGTPDYIAPEI  167 (316)
T ss_pred             HHHHHHCCEEeCCCCHHHeEECCCCCEEEccCcCCeECCCCC--CccccccCCccccCHHH
Confidence            468999999999999999999999999999999986532222  11222334556666654

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=98.82  E-value=2.4e-09  Score=77.29  Aligned_cols=60  Identities=18%  Similarity=0.327  Sum_probs=43.0

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||+.+++|++|+|.||+++.++.++|+|||++.......... .....++..|++||.
T Consensus       155 L~~LH~~~ivHrDLkp~NILl~~~~~~kL~DfG~~~~~~~~~~~~-~~~~~gt~~y~aPE~  214 (370)
T cd05596         155 LDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMDANGMVR-CDTAVGTPDYISPEV  214 (370)
T ss_pred             HHHHHHCCeeccCCCHHHEEEcCCCCEEEEeccceeeccCCCccc-CCCCCCCcCeECHHH
Confidence            468999999999999999999999999999999986543222111 122234455555554

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>KOG1187|consensus

Probab=98.81  E-value=1.6e-09  Score=78.87  Aligned_cols=61  Identities=28%  Similarity=0.477  Sum_probs=46.0

Q ss_pred             CccchhC---CccccCCCCCceEEecCCcEEEeeccccccccc-cCCCCCCCCCCCCCCCChhhhhh
Q psy700            1 MGYLHAR---GILHKDLKSKNIFIEKNNKVVITDFGLFNFSKL-YNSYTSNEKPSSPLGEGKEEEEE   63 (93)
Q Consensus         1 l~~lhs~---~iihrdlk~~nill~~~~~~kl~dfgla~~~~~-~~~~~~~~~~~~~~~~~p~e~~~   63 (93)
                      |.|||..   .|||||+++.|||++.+...|++|||+|+..+. ........  .+++||.+|+...
T Consensus       187 L~yLH~~~~~~iiHrDiKssNILLD~~~~aKlsDFGLa~~~~~~~~~~~~~~--~gt~gY~~PEy~~  251 (361)
T KOG1187|consen  187 LAYLHEGCPPPIIHRDIKSSNILLDEDFNAKLSDFGLAKLGPEGDTSVSTTV--MGTFGYLAPEYAS  251 (361)
T ss_pred             HHHHccCCCCCEecCCCCHHHeeECCCCCEEccCccCcccCCccccceeeec--CCCCccCChhhhc
Confidence            4689974   499999999999999999999999999966553 22111111  6678888888664

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=98.81  E-value=2.8e-09  Score=81.47  Aligned_cols=59  Identities=27%  Similarity=0.398  Sum_probs=41.5

Q ss_pred             CccchhCCccccCCCCCceEEec-CCcEEEeeccccccccccCCCCCCCCCCCCCCCChhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEK-NNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEE   60 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~-~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e   60 (93)
                      |.|||+++++||||+|.||+++. ...++|+|||+|+.......+......+.+ .|++||
T Consensus       268 L~yLH~~gIiHRDLKP~NILl~~~~~~~KL~DFGlA~~l~~~~~~~~~~~~~t~-~Y~APE  327 (566)
T PLN03225        268 LDGLHSTGIVHRDVKPQNIIFSEGSGSFKIIDLGAAADLRVGINYIPKEFLLDP-RYAAPE  327 (566)
T ss_pred             HHHHHHCCEEeCcCCHHHEEEeCCCCcEEEEeCCCccccccccccCCcccccCC-CccChH
Confidence            46899999999999999999985 578999999998754333222222223333 455555

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=98.81  E-value=2.4e-09  Score=75.61  Aligned_cols=37  Identities=41%  Similarity=0.802  Sum_probs=34.3

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNF   37 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~   37 (93)
                      |.|||+.+++|+||+|.||+++.++.++|+|||+++.
T Consensus       108 L~~lH~~~ivHrDlkp~NIll~~~~~~kl~DfG~a~~  144 (323)
T cd05571         108 LGYLHSCDVVYRDLKLENLMLDKDGHIKITDFGLCKE  144 (323)
T ss_pred             HHHHHhCCeEeCCCCHHHEEECCCCCEEEeeCCCCcc
Confidence            4689999999999999999999999999999999864

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=98.80  E-value=2.6e-09  Score=75.43  Aligned_cols=60  Identities=23%  Similarity=0.305  Sum_probs=43.2

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||+|.||+++.++.++|+|||++........  ......++..|++||.-
T Consensus       109 l~~LH~~~ivHrDlkp~Nili~~~~~~kl~Dfg~a~~~~~~~~--~~~~~~gt~~y~aPE~~  168 (330)
T cd05586         109 LEHLHKYDIVYRDLKPENILLDATGHIALCDFGLSKANLTDNK--TTNTFCGTTEYLAPEVL  168 (330)
T ss_pred             HHHHHHCCeEeccCCHHHeEECCCCCEEEecCCcCcCCCCCCC--CccCccCCccccCHHHH
Confidence            4689999999999999999999999999999999864322211  12223345556666543

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=98.80  E-value=2.8e-09  Score=74.86  Aligned_cols=38  Identities=39%  Similarity=0.756  Sum_probs=34.9

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|||+++++|++|+|.||+++.++.++|+|||+++..
T Consensus       116 L~~LH~~~ivH~dlkp~NIll~~~~~~kL~Dfg~~~~~  153 (338)
T cd07859         116 LKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVA  153 (338)
T ss_pred             HHHHHHCCeecCCCCHHHeEECCCCcEEEccCcccccc
Confidence            46899999999999999999999999999999998654

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=98.79  E-value=3e-09  Score=74.34  Aligned_cols=61  Identities=26%  Similarity=0.326  Sum_probs=41.6

Q ss_pred             CccchhCCccccCCCCCceEEe----cCCcEEEeeccccccccccCCC-CCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIE----KNNKVVITDFGLFNFSKLYNSY-TSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~----~~~~~kl~dfgla~~~~~~~~~-~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||+.+++|+||+|.||++.    ..+.++|+|||+++........ .......++.+|+|||.
T Consensus       121 l~~LH~~~ivHrDlkp~Nil~~~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~t~~y~aPE~  186 (317)
T cd07868         121 IHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPEL  186 (317)
T ss_pred             HHHHHhCCEEcCCCCHHHEEEecCCCCcCcEEEeecCceeccCCCCccccccCCccccccccCCHH
Confidence            4689999999999999999994    4567999999998764322111 11222333455666654

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=98.79  E-value=2.5e-09  Score=74.17  Aligned_cols=39  Identities=38%  Similarity=0.752  Sum_probs=35.2

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||+++++|++|+|.||+++.++.++|+|||+++...
T Consensus       116 L~~LH~~~ivH~dlkp~Nil~~~~~~~kl~DfG~~~~~~  154 (288)
T cd07871         116 LSYCHKRKILHRDLKPQNLLINEKGELKLADFGLARAKS  154 (288)
T ss_pred             HHHHHhCCcccCCCCHHHEEECCCCCEEECcCcceeecc
Confidence            468999999999999999999999999999999986543

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=98.79  E-value=3e-09  Score=75.02  Aligned_cols=60  Identities=22%  Similarity=0.350  Sum_probs=43.3

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||+.+++|++|++.||+++..+.++|+|||++........... ....++..|++||.
T Consensus       115 L~~lH~~~i~H~Dlkp~NIll~~~~~~kL~Dfg~a~~~~~~~~~~~-~~~~gt~~y~aPE~  174 (330)
T cd05601         115 IHSVHQMGYVHRDIKPENVLIDRTGHIKLADFGSAARLTANKMVNS-KLPVGTPDYIAPEV  174 (330)
T ss_pred             HHHHHHCCeEcccCchHheEECCCCCEEeccCCCCeECCCCCceee-ecccCCccccCHHH
Confidence            4689999999999999999999999999999999875443222211 11233455666654

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=98.78  E-value=4.5e-09  Score=75.48  Aligned_cols=60  Identities=30%  Similarity=0.435  Sum_probs=43.1

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||+.+++|++|+|.||+++.++.++|+|||+++............. ..+.+|.+||.
T Consensus       116 L~~LH~~~ivH~dlkp~Nili~~~~~~kL~Dfg~a~~~~~~~~~~~~~~-~~~~~y~aPE~  175 (372)
T cd07853         116 LKYLHSAGILHRDIKPGNLLVNSNCVLKICDFGLARVEEPDESKHMTQE-VVTQYYRAPEI  175 (372)
T ss_pred             HHHHHhCCeeCCCCChHHEEECCCCCEEeccccceeecccCccccCCCC-CcCCCcCCHHH
Confidence            4689999999999999999999999999999999876443222222222 23445555554

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=98.78  E-value=3.5e-09  Score=72.11  Aligned_cols=39  Identities=33%  Similarity=0.647  Sum_probs=35.3

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||.++++|++++|.||+++.+..++++|||++....
T Consensus       125 l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~  163 (272)
T cd05075         125 MEYLSSKSFIHRDLAARNCMLNENMNVCVADFGLSKKIY  163 (272)
T ss_pred             HHHHHHCCeeccccchhheEEcCCCCEEECCCCcccccC
Confidence            468999999999999999999988999999999987654

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>KOG0616|consensus

Probab=98.78  E-value=2.3e-09  Score=76.65  Aligned_cols=39  Identities=36%  Similarity=0.706  Sum_probs=36.1

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      +.|||+.++++|||+|.||++++++.+|+.|||+|+...
T Consensus       157 leylH~~~iiYRDLKPENiLlD~~G~iKitDFGFAK~v~  195 (355)
T KOG0616|consen  157 LEYLHSLDIIYRDLKPENLLLDQNGHIKITDFGFAKRVS  195 (355)
T ss_pred             HHHHHhcCeeeccCChHHeeeccCCcEEEEeccceEEec
Confidence            469999999999999999999999999999999997654

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=98.78  E-value=4.2e-09  Score=72.20  Aligned_cols=62  Identities=27%  Similarity=0.359  Sum_probs=44.0

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||.++++|++++|.||+++.+..++|+|||++.................+..|.|||..
T Consensus       137 l~~lH~~~i~H~dlkp~Nil~~~~~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  198 (283)
T cd05048         137 MEYLSSHHFVHRDLAARNCLVGEGLTVKISDFGLSRDIYSADYYRVQSKSLLPVRWMPPEAI  198 (283)
T ss_pred             HHHHHhCCeeccccccceEEEcCCCcEEECCCcceeeccccccccccCCCcccccccCHHHh
Confidence            46899999999999999999999999999999998654322222222222234556666643

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=98.78  E-value=4.9e-09  Score=72.31  Aligned_cols=62  Identities=23%  Similarity=0.399  Sum_probs=45.3

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||..+++|++|+|.||+++.++.++|+|||+++................++.|+||+.-
T Consensus       145 l~~LH~~~ivH~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  206 (293)
T cd05053         145 MEFLASKKCIHRDLAARNVLVTEDHVMKIADFGLARDIHHIDYYRKTTNGRLPVKWMAPEAL  206 (293)
T ss_pred             HHHHHHCCccccccceeeEEEcCCCeEEeCccccccccccccceeccCCCCCCccccCHHHh
Confidence            46899999999999999999999999999999998765432222222222345667777753

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=98.78  E-value=3.5e-09  Score=74.85  Aligned_cols=39  Identities=36%  Similarity=0.612  Sum_probs=35.1

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||+.+++|++|++.||+++..+.++|+|||++....
T Consensus       114 l~~lH~~~ivH~dlkp~Nil~~~~~~~kL~Dfg~a~~~~  152 (333)
T cd05600         114 VDALHELGYIHRDLKPENFLIDASGHIKLTDFGLSKGIV  152 (333)
T ss_pred             HHHHHHCCccccCCCHHHEEECCCCCEEEEeCcCCcccc
Confidence            468999999999999999999999999999999986543

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=98.77  E-value=3.8e-09  Score=74.90  Aligned_cols=59  Identities=27%  Similarity=0.376  Sum_probs=42.4

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||+++++|++|+|.||+++..+.++|+|||+++.......  ......++..|++||.
T Consensus       108 L~~LH~~~ivHrDikp~NIll~~~~~~kL~DfG~~~~~~~~~~--~~~~~~gt~~y~aPE~  166 (328)
T cd05593         108 LDYLHSGKIVYRDLKLENLMLDKDGHIKITDFGLCKEGITDAA--TMKTFCGTPEYLAPEV  166 (328)
T ss_pred             HHHHHhCCeEecccCHHHeEECCCCcEEEecCcCCccCCCccc--ccccccCCcCccChhh
Confidence            4689999999999999999999999999999999864321111  1122334455555554

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=98.77  E-value=4.4e-09  Score=74.91  Aligned_cols=58  Identities=28%  Similarity=0.307  Sum_probs=42.6

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||.++++|++|+|.||+++.++.++|+|||+++.......   .....++..|++||.
T Consensus       132 L~~LH~~givHrDikp~Nill~~~~~~kl~Dfg~~~~~~~~~~---~~~~~~t~~y~aPE~  189 (355)
T cd07874         132 IKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFM---MTPYVVTRYYRAPEV  189 (355)
T ss_pred             HHHHHhCCcccCCCChHHEEECCCCCEEEeeCcccccCCCccc---cCCccccCCccCHHH
Confidence            4689999999999999999999999999999999865432211   112233455666654

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=98.77  E-value=3.7e-09  Score=74.58  Aligned_cols=59  Identities=31%  Similarity=0.460  Sum_probs=42.5

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||+.+++|+||++.||+++.++.++|+|||+++.......  ......++..|++||.
T Consensus       109 L~~lH~~giiHrDlkp~Nili~~~~~~kl~DfG~a~~~~~~~~--~~~~~~gt~~y~aPE~  167 (325)
T cd05602         109 LGYLHSLNIVYRDLKPENILLDSQGHIVLTDFGLCKENIEHNG--TTSTFCGTPEYLAPEV  167 (325)
T ss_pred             HHHHHHCCeEecCCCHHHeEECCCCCEEEccCCCCcccccCCC--CcccccCCccccCHHH
Confidence            4689999999999999999999999999999999864322111  1222234455566654

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=98.76  E-value=4.9e-09  Score=72.32  Aligned_cols=62  Identities=26%  Similarity=0.387  Sum_probs=45.2

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+.+++|++++|.||+++....++++|||++.................+..|+||+..
T Consensus       143 l~~LH~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  204 (296)
T cd05051         143 MRYLESLNFVHRDLATRNCLVGKNYTIKIADFGMSRNLYSSDYYRVQGRAPLPIRWMAWESV  204 (296)
T ss_pred             HHHHHHcCccccccchhceeecCCCceEEccccceeecccCcceeecCcCCCCceecCHHHh
Confidence            46899999999999999999999999999999998654333222223333345566666643

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=98.76  E-value=4.8e-09  Score=73.65  Aligned_cols=60  Identities=20%  Similarity=0.305  Sum_probs=43.3

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||+|.||+++.++.++|+|||+++.......  ......++..|++||.-
T Consensus       106 l~~lH~~~i~HrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~  165 (312)
T cd05585         106 LENLHKFNVIYRDLKPENILLDYQGHIALCDFGLCKLNMKDDD--KTNTFCGTPEYLAPELL  165 (312)
T ss_pred             HHHHHhCCeEeCCCCHHHeEECCCCcEEEEECcccccCccCCC--ccccccCCcccCCHHHH
Confidence            4689999999999999999999999999999999865322221  11222344556666643

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=98.76  E-value=4.5e-09  Score=74.50  Aligned_cols=60  Identities=17%  Similarity=0.241  Sum_probs=43.4

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||.++++|++|++.||+++.++.++|+|||++.......... .....++..|++|+.
T Consensus       115 L~~lH~~~iiHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~-~~~~~gt~~y~aPE~  174 (331)
T cd05624         115 IHSIHQLHYVHRDIKPDNVLLDMNGHIRLADFGSCLKMNQDGTVQ-SSVAVGTPDYISPEI  174 (331)
T ss_pred             HHHHHHCCeeeccCchHHEEEcCCCCEEEEeccceeeccCCCcee-eccccCCcccCCHHH
Confidence            468999999999999999999999999999999986543222211 122334556666664

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=98.75  E-value=4.7e-09  Score=72.19  Aligned_cols=62  Identities=31%  Similarity=0.356  Sum_probs=44.4

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||.++++|++++|.||+++.+..++++|||++.................+..|++|+.-
T Consensus       137 l~~lH~~~i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  198 (283)
T cd05090         137 MEYLSSHFFVHKDLAARNILIGEQLHVKISDLGLSREIYSADYYRVQPKSLLPIRWMPPEAI  198 (283)
T ss_pred             HHHHHhcCeehhccccceEEEcCCCcEEeccccccccccCCcceecccCCCccceecChHHh
Confidence            46899999999999999999999889999999998654322222222222335556666643

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=98.75  E-value=5.4e-09  Score=74.79  Aligned_cols=58  Identities=28%  Similarity=0.307  Sum_probs=42.9

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||+++++|++|+|.||+++.++.++|+|||+++.......   .....++.+|++||.
T Consensus       139 L~~LH~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~---~~~~~~t~~y~aPE~  196 (364)
T cd07875         139 IKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFM---MTPYVVTRYYRAPEV  196 (364)
T ss_pred             HHHHhhCCeecCCCCHHHEEECCCCcEEEEeCCCccccCCCCc---ccCCcccCCcCCHHH
Confidence            4689999999999999999999999999999999875432211   112233455666664

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=98.75  E-value=4.2e-09  Score=74.34  Aligned_cols=60  Identities=30%  Similarity=0.430  Sum_probs=43.0

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+.+++|++|++.||+++.++.++|+|||++........  ......++..|++||.-
T Consensus       109 l~~lH~~givH~Dlkp~NIll~~~~~~kL~DfG~~~~~~~~~~--~~~~~~gt~~y~aPE~~  168 (325)
T cd05604         109 LGYLHSINIVYRDLKPENILLDSQGHVVLTDFGLCKEGIAQSD--TTTTFCGTPEYLAPEVI  168 (325)
T ss_pred             HHHHHHCCeeecCCCHHHeEECCCCCEEEeecCCcccCCCCCC--CcccccCChhhCCHHHH
Confidence            4689999999999999999999999999999999864321111  11222345555666543

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=98.75  E-value=4.8e-09  Score=72.63  Aligned_cols=58  Identities=22%  Similarity=0.282  Sum_probs=42.2

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||+.+++|++|+|.||+++.++.++|+|||++........   .....++.+|++||.
T Consensus       115 l~~lH~~~iiH~dikp~Nill~~~~~~kl~Dfg~~~~~~~~~~---~~~~~g~~~y~aPE~  172 (285)
T cd05631         115 LEDLQRERIVYRDLKPENILLDDRGHIRISDLGLAVQIPEGET---VRGRVGTVGYMAPEV  172 (285)
T ss_pred             HHHHHhCCEEeCCCCHHHEEECCCCCEEEeeCCCcEEcCCCCe---ecCCCCCCCccCHhh
Confidence            4689999999999999999999889999999999865432211   112234555555554

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=98.75  E-value=5.1e-09  Score=72.97  Aligned_cols=59  Identities=27%  Similarity=0.445  Sum_probs=42.7

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||+.+++|++|+|.||+++..+.++|+|||++.........  .....++..|+|||.
T Consensus       116 l~~lH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~--~~~~~~~~~y~aPE~  174 (303)
T cd07869         116 LSYIHQRYILHRDLKPQNLLISDTGELKLADFGLARAKSVPSHT--YSNEVVTLWYRPPDV  174 (303)
T ss_pred             HHHHHHCCeecCCCCHHHEEECCCCCEEECCCCcceeccCCCcc--CCCCcccCCCCChHH
Confidence            46899999999999999999999999999999998654322211  112233455666664

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=98.75  E-value=5.7e-09  Score=72.65  Aligned_cols=61  Identities=28%  Similarity=0.453  Sum_probs=43.0

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||.++++|++|++.||+++.++.++++|||+++................+..|++|+.
T Consensus       150 l~~LH~~givH~dlkp~Nili~~~~~~kl~D~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~  210 (304)
T cd05101         150 MEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDVNNIDYYKKTTNGRLPVKWMAPEA  210 (304)
T ss_pred             HHHHHHCCeeecccccceEEEcCCCcEEECCCccceecccccccccccCCCCCceeeCchh
Confidence            4689999999999999999999889999999999875543222222222223344555553

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=98.75  E-value=6.5e-09  Score=72.54  Aligned_cols=61  Identities=30%  Similarity=0.416  Sum_probs=43.5

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||.++++|++|+|.||++..+..++|+|||+++................+..|.+|+.
T Consensus       122 L~~LH~~~ivH~dikp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~PE~  182 (303)
T cd05110         122 MMYLEERRLVHRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGKMPIKWMALEC  182 (303)
T ss_pred             HHHHhhcCeeccccccceeeecCCCceEEccccccccccCcccccccCCCccccccCCHHH
Confidence            4689999999999999999999888899999999876543322222222233445555553

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>KOG0614|consensus

Probab=98.75  E-value=3.4e-09  Score=80.45  Aligned_cols=57  Identities=25%  Similarity=0.360  Sum_probs=45.1

Q ss_pred             ccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhh
Q psy700            2 GYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEE   60 (93)
Q Consensus         2 ~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e   60 (93)
                      .|||+++||+|||+|.|++++..+++||.|||+|+.......+.+.  .++|-|.+|+-
T Consensus       534 eYLH~k~iIYRDLKPENllLd~~Gy~KLVDFGFAKki~~g~KTwTF--cGTpEYVAPEI  590 (732)
T KOG0614|consen  534 EYLHRKGIIYRDLKPENLLLDNRGYLKLVDFGFAKKIGSGRKTWTF--CGTPEYVAPEI  590 (732)
T ss_pred             HHHHhcCceeccCChhheeeccCCceEEeehhhHHHhccCCceeee--cCCcccccchh
Confidence            6999999999999999999999999999999999876655543332  24455666653

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=98.74  E-value=4.5e-09  Score=74.08  Aligned_cols=59  Identities=22%  Similarity=0.374  Sum_probs=42.8

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||..+++|++|+|.||+++.++.++|+|||++........  ......++..|+|||.
T Consensus       114 L~~LH~~~ivHrDlkp~Nill~~~~~~kL~DfG~~~~~~~~~~--~~~~~~gt~~y~aPE~  172 (323)
T cd05616         114 LFFLHSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENMWDGV--TTKTFCGTPDYIAPEI  172 (323)
T ss_pred             HHHHHHCCEEecCCCHHHeEECCCCcEEEccCCCceecCCCCC--ccccCCCChhhcCHHH
Confidence            4689999999999999999999999999999999864322111  1122334555666664

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=98.74  E-value=4.6e-09  Score=74.04  Aligned_cols=59  Identities=31%  Similarity=0.447  Sum_probs=42.5

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||.++++|++|++.||+++.++.++|+|||++........  ......++..|++||.
T Consensus       109 l~~lH~~givH~dikp~NIll~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~  167 (323)
T cd05575         109 LGYLHSLNIIYRDLKPENILLDSQGHVVLTDFGLCKEGIEHSK--TTSTFCGTPEYLAPEV  167 (323)
T ss_pred             HHHHHHCCeEeCCCCHHHeEECCCCcEEEeccCCCcccccCCC--ccccccCChhhcChhh
Confidence            4689999999999999999999999999999999864322211  1122234455566654

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=98.74  E-value=5.6e-09  Score=74.03  Aligned_cols=61  Identities=21%  Similarity=0.287  Sum_probs=43.0

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||.++++|++|++.||+++.++.++|+|||++........... ....++..|++||.-
T Consensus       115 l~~lH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~-~~~~gt~~y~aPE~~  175 (331)
T cd05597         115 IDSVHQLGYVHRDIKPDNVLLDKNGHIRLADFGSCLRLLADGTVQS-NVAVGTPDYISPEIL  175 (331)
T ss_pred             HHHHHhCCeEECCCCHHHEEECCCCCEEEEECCceeecCCCCCccc-cceeccccccCHHHH
Confidence            4689999999999999999999999999999999765432221111 112344555555543

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=98.74  E-value=8.3e-09  Score=72.81  Aligned_cols=38  Identities=37%  Similarity=0.773  Sum_probs=34.1

Q ss_pred             Cccchh-CCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHA-RGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs-~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|||+ .+++|+||+|.||+++.++.++|+|||+++..
T Consensus       108 L~~lH~~~~ivHrDikp~NIll~~~~~~kL~Dfg~~~~~  146 (325)
T cd05594         108 LDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEG  146 (325)
T ss_pred             HHHHHhcCCEEecCCCCCeEEECCCCCEEEecCCCCeec
Confidence            468997 79999999999999999999999999998643

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=98.74  E-value=5.5e-09  Score=71.67  Aligned_cols=61  Identities=28%  Similarity=0.387  Sum_probs=43.0

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||..+++|++|+|.||+++.++.++++|||++.................+..|++|+.
T Consensus       132 l~~lH~~~~vH~dlkp~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~  192 (277)
T cd05062         132 MAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPES  192 (277)
T ss_pred             HHHHHHCCcccCCcchheEEEcCCCCEEECCCCCccccCCcceeecCCCCccCHhhcChhH
Confidence            4689999999999999999999999999999999864432222211222223455666654

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=98.74  E-value=6.3e-09  Score=73.44  Aligned_cols=59  Identities=29%  Similarity=0.399  Sum_probs=42.4

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||+.+++|++|++.||+++.++.++|+|||+++.......  ......++.+|++||.
T Consensus       113 l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~  171 (323)
T cd05584         113 LEHLHQQGIIYRDLKPENILLDAQGHVKLTDFGLCKESIHEGT--VTHTFCGTIEYMAPEI  171 (323)
T ss_pred             HHHHHHCCeecCCCCHHHeEECCCCCEEEeeCcCCeecccCCC--cccccCCCccccChhh
Confidence            4689999999999999999999999999999999864322221  1122234455555554

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=98.73  E-value=6e-09  Score=74.42  Aligned_cols=38  Identities=39%  Similarity=0.693  Sum_probs=34.8

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|||+.+++|++|+|.||+++.++.++|+|||+++..
T Consensus       136 L~~LH~~~ivHrDlkp~NIl~~~~~~~kl~Dfg~a~~~  173 (359)
T cd07876         136 IKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTA  173 (359)
T ss_pred             HHHHHhCCcccCCCCHHHEEECCCCCEEEecCCCcccc
Confidence            46899999999999999999999999999999998653

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=98.73  E-value=5.9e-09  Score=73.83  Aligned_cols=60  Identities=18%  Similarity=0.226  Sum_probs=42.6

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||+.+++|++|++.||+++.++.++|+|||++......... ......++..|++||.
T Consensus       115 l~~lH~~~iiHrDlkp~Nili~~~~~~kL~DfG~a~~~~~~~~~-~~~~~~gt~~y~aPE~  174 (332)
T cd05623         115 IDSVHQLHYVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGTV-QSSVAVGTPDYISPEI  174 (332)
T ss_pred             HHHHHHCCeEecCCCHHHEEECCCCCEEEeecchheecccCCcc-eecccccCccccCHHH
Confidence            46899999999999999999998899999999998643322211 1122234455666654

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=98.73  E-value=5.6e-09  Score=73.73  Aligned_cols=60  Identities=20%  Similarity=0.352  Sum_probs=43.3

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||..+++|++|+|.||+++.++.++|+|||++........  ......++..|+|||.-
T Consensus       109 L~~lH~~~ivH~dlkp~NIli~~~~~~kL~DfG~~~~~~~~~~--~~~~~~gt~~y~aPE~~  168 (320)
T cd05590         109 LMFLHDKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGIFNGK--TTSTFCGTPDYIAPEIL  168 (320)
T ss_pred             HHHHHHCCeEeCCCCHHHeEECCCCcEEEeeCCCCeecCcCCC--cccccccCccccCHHHH
Confidence            4689999999999999999999999999999999764322111  12223345556666643

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=98.73  E-value=5.1e-09  Score=73.86  Aligned_cols=60  Identities=22%  Similarity=0.356  Sum_probs=42.5

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||.++++|++|+|.||+++.++.++|+|||++........  ......++..|+|||.-
T Consensus       114 l~~lH~~~ivH~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~  173 (324)
T cd05587         114 LFFLHSKGIIYRDLKLDNVMLDAEGHIKIADFGMCKENIFGGK--TTRTFCGTPDYIAPEII  173 (324)
T ss_pred             HHHHHHCCeEecCCCHHHeEEcCCCCEEEeecCcceecCCCCC--ceeeecCCccccChhhh
Confidence            4689999999999999999999999999999998754321111  11122344556666543

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>KOG0669|consensus

Probab=98.73  E-value=4.6e-09  Score=74.32  Aligned_cols=63  Identities=25%  Similarity=0.334  Sum_probs=47.1

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCC--CCCCCChhhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPS--SPLGEGKEEEEE   63 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~--~~~~~~p~e~~~   63 (93)
                      |.|+|+..++|||+++.|++++.++.++|+|||+++.+.............  .+.+|.||+--.
T Consensus       137 L~~iHr~kilHRDmKaaNvLIt~dgilklADFGlar~fs~~~n~~kprytnrvvTLwYrppEllL  201 (376)
T KOG0669|consen  137 LYYIHRNKILHRDMKAANVLITKDGILKLADFGLARAFSTSKNVVKPRYTNRVVTLWYRPPELLL  201 (376)
T ss_pred             HHHHHHhhHHhhcccHhhEEEcCCceEEeeccccccceecccccCCCCcccceeeeecCCHHHhh
Confidence            468999999999999999999999999999999997655333332222111  366888887543

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=98.73  E-value=7.7e-09  Score=70.25  Aligned_cols=39  Identities=33%  Similarity=0.629  Sum_probs=35.3

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||..+++|++++|.||++..+..++|+|||+++...
T Consensus       126 L~~lH~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~  164 (273)
T cd05035         126 MEYLSNRNFIHRDLAARNCMLREDMTVCVADFGLSKKIY  164 (273)
T ss_pred             HHHHHhCCeeccccchheEEECCCCeEEECCccceeecc
Confidence            468999999999999999999998899999999987654

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=98.73  E-value=5.7e-09  Score=74.80  Aligned_cols=38  Identities=29%  Similarity=0.654  Sum_probs=34.6

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|||+.+++|+||+|.||+++.++.++|+|||+++..
T Consensus       114 L~~lH~~givHrDlKp~NILi~~~~~vkL~DFGla~~~  151 (363)
T cd05628         114 IDSIHQLGFIHRDIKPDNLLLDSKGHVKLSDFGLCTGL  151 (363)
T ss_pred             HHHHHhCCeEecCCCHHHeEECCCCCEEEeeccCcccc
Confidence            46899999999999999999999999999999998643

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=98.73  E-value=5.9e-09  Score=73.37  Aligned_cols=37  Identities=46%  Similarity=0.852  Sum_probs=34.3

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNF   37 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~   37 (93)
                      |.|||..+++|+||++.||+++.++.++|+|||+++.
T Consensus       109 L~~lH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~  145 (321)
T cd05603         109 IGYLHSLNIIYRDLKPENILLDSQGHVVLTDFGLCKE  145 (321)
T ss_pred             HHHHHHCCeEeccCCHHHeEECCCCCEEEccCCCCcc
Confidence            4689999999999999999999999999999999764

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=98.72  E-value=6.6e-09  Score=73.22  Aligned_cols=60  Identities=22%  Similarity=0.336  Sum_probs=43.1

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+.+++|+||+|.||+++.++.++|+|||++........  ......++..|++||.-
T Consensus       109 L~~LH~~~ivHrDikp~Nill~~~~~~kL~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~  168 (321)
T cd05591         109 LMFLHRHGVIYRDLKLDNILLDAEGHCKLADFGMCKEGILNGV--TTTTFCGTPDYIAPEIL  168 (321)
T ss_pred             HHHHHHCCeeccCCCHHHeEECCCCCEEEeecccceecccCCc--cccccccCccccCHHHH
Confidence            4689999999999999999999999999999999864322111  11222345556666643

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=98.72  E-value=6.9e-09  Score=71.37  Aligned_cols=60  Identities=22%  Similarity=0.295  Sum_probs=42.8

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||..+++|++|++.||+++.++.++|+|||++............. ..++.+|.+||.
T Consensus       113 L~~lH~~~i~H~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~-~~~~~~y~aPE~  172 (287)
T cd07848         113 IHWCHKNDIVHRDIKPENLLISHNDVLKLCDFGFARNLSEGSNANYTE-YVATRWYRSPEL  172 (287)
T ss_pred             HHHHHHCCeecCCCCHHHEEEcCCCcEEEeeccCcccccccccccccc-cccccccCCcHH
Confidence            468999999999999999999999999999999987643222211111 223445555553

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>KOG0694|consensus

Probab=98.72  E-value=6.2e-09  Score=80.39  Aligned_cols=59  Identities=25%  Similarity=0.356  Sum_probs=44.7

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||.++||+||||..|||++..+.+||+|||+++-......  .+.+++++.-|++|+.
T Consensus       481 L~fLH~~~IIYRDlKLdNiLLD~eGh~kiADFGlcKe~m~~g~--~TsTfCGTpey~aPEi  539 (694)
T KOG0694|consen  481 LQFLHENGIIYRDLKLDNLLLDTEGHVKIADFGLCKEGMGQGD--RTSTFCGTPEFLAPEV  539 (694)
T ss_pred             HHHHHhcCceeeecchhheEEcccCcEEecccccccccCCCCC--ccccccCChhhcChhh
Confidence            5799999999999999999999999999999999875442222  3444555554444443

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=98.72  E-value=5.9e-09  Score=73.68  Aligned_cols=37  Identities=38%  Similarity=0.786  Sum_probs=34.2

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNF   37 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~   37 (93)
                      |.|||+++++|+||++.||+++.++.++|+|||++..
T Consensus       108 L~~LH~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~  144 (323)
T cd05595         108 LEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKE  144 (323)
T ss_pred             HHHHHHCCeEecCCCHHHEEEcCCCCEEecccHHhcc
Confidence            4689999999999999999999999999999998764

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>KOG0582|consensus

Probab=98.72  E-value=7.3e-09  Score=77.23  Aligned_cols=38  Identities=37%  Similarity=0.727  Sum_probs=34.6

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|||.+|.|||++|+.|||++.++.++|+|||.+...
T Consensus       139 L~YLH~~G~IHRdvKAgnILi~~dG~VkLadFgvsa~l  176 (516)
T KOG0582|consen  139 LDYLHQNGHIHRDVKAGNILIDSDGTVKLADFGVSASL  176 (516)
T ss_pred             HHHHHhcCceecccccccEEEcCCCcEEEcCceeeeee
Confidence            46999999999999999999999999999999976443

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=98.72  E-value=7.2e-09  Score=73.50  Aligned_cols=60  Identities=23%  Similarity=0.387  Sum_probs=42.8

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|++|+|.||+++.++.++|+|||+++.......  ......++.+|++||.-
T Consensus       109 l~~lH~~~ivH~Dikp~Nili~~~~~~kL~DfG~~~~~~~~~~--~~~~~~gt~~y~aPE~~  168 (329)
T cd05618         109 LNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGD--TTSTFCGTPNYIAPEIL  168 (329)
T ss_pred             HHHHHHCCeeeCCCCHHHEEECCCCCEEEeeCCccccccCCCC--ccccccCCccccCHHHH
Confidence            4689999999999999999999999999999999864321111  11222345555555543

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=98.71  E-value=8.1e-09  Score=71.35  Aligned_cols=61  Identities=30%  Similarity=0.437  Sum_probs=44.3

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||..+++|++++|.||+++....++|+|||+++................+..|++|+.
T Consensus       140 l~~LH~~~ivH~dikp~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~apE~  200 (290)
T cd05045         140 MQYLAEMKLVHRDLAARNVLVAEGRKMKISDFGLSRDVYEEDSYVKRSKGRIPVKWMAIES  200 (290)
T ss_pred             HHHHHHCCeehhhhhhheEEEcCCCcEEeccccccccccCccchhcccCCCCCccccCHHH
Confidence            4689999999999999999999889999999999865433322222223334555666664

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=98.71  E-value=7.9e-09  Score=71.67  Aligned_cols=61  Identities=23%  Similarity=0.346  Sum_probs=43.7

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||+.+++|++++|.||+++.+..++|+|||++.................+..|.+|+.
T Consensus       142 l~~lH~~~i~H~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~  202 (295)
T cd05097         142 MKYLASLNFVHRDLATRNCLVGNHYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMAWES  202 (295)
T ss_pred             HHHHHhcCeeccccChhhEEEcCCCcEEecccccccccccCcceeccCcCcCceeecChhh
Confidence            4689999999999999999999888999999999865433222222222333555555554

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=98.71  E-value=9.9e-09  Score=70.05  Aligned_cols=62  Identities=27%  Similarity=0.365  Sum_probs=44.7

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||..+++|++++|.||+++.++.++|+|||+++................+..|.+|+.-
T Consensus       132 l~~lH~~~i~H~di~p~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  193 (277)
T cd05032         132 MAYLAAKKFVHRDLAARNCMVAEDLTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESL  193 (277)
T ss_pred             HHHHHhCCccccccChheEEEcCCCCEEECCcccchhhccCcccccCCCCCccccccCHHHH
Confidence            46899999999999999999999999999999998654433222222222335566666643

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=98.71  E-value=1.1e-08  Score=72.77  Aligned_cols=61  Identities=33%  Similarity=0.450  Sum_probs=43.8

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||+++++|++|+|.||+++.+..++++|||++.................+..|.+|+.
T Consensus       192 l~~lH~~~i~H~dikp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~  252 (343)
T cd05103         192 MEFLASRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPET  252 (343)
T ss_pred             HHHHHhCCeecCCCccCeEEEcCCCcEEEEecccccccccCcchhhcCCCCCCcceECcHH
Confidence            4689999999999999999999889999999999875433322222222334455656654

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>KOG0597|consensus

Probab=98.71  E-value=5.8e-09  Score=80.01  Aligned_cols=60  Identities=33%  Similarity=0.489  Sum_probs=46.9

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||+.+++|+|++|.||++...+.+|++|||+|+....... ......++|.|++|+--
T Consensus       113 L~yLhs~rilhrd~kPqniLl~~~~~~KlcdFg~Ar~m~~~t~-vltsikGtPlYmAPElv  172 (808)
T KOG0597|consen  113 LYYLHSNRILHRDMKPQNILLEKGGTLKLCDFGLARAMSTNTS-VLTSIKGTPLYMAPELV  172 (808)
T ss_pred             HHHHHhcCcccccCCcceeeecCCCceeechhhhhhhcccCce-eeeeccCcccccCHHHH
Confidence            4689999999999999999999999999999999986654322 23344566777776643

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=98.71  E-value=1e-08  Score=70.19  Aligned_cols=37  Identities=27%  Similarity=0.483  Sum_probs=33.8

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNF   37 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~   37 (93)
                      |.|||+.+++|+++++.||+++.++.++++|||++..
T Consensus       112 l~~lH~~~i~H~dikp~nil~~~~~~~~l~Dfg~~~~  148 (268)
T cd05086         112 VTHMHKHNFLHSDLALRNCFLTSDLTVKVGDYGIGPS  148 (268)
T ss_pred             HHHHHHCCeeccCCccceEEEcCCccEEecccccccc
Confidence            4689999999999999999999889999999998754

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=98.71  E-value=1.3e-08  Score=68.22  Aligned_cols=61  Identities=26%  Similarity=0.371  Sum_probs=44.7

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||.++++|+++++.||+++.++.++|+|||++.................+..|.+|+.
T Consensus       118 l~~lH~~~i~H~di~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~  178 (262)
T cd00192         118 MEYLASKKFVHRDLAARNCLVGEDLVVKISDFGLSRDVYDDDYYRKKTGGKLPIRWMAPES  178 (262)
T ss_pred             HHHHHcCCcccCccCcceEEECCCCcEEEcccccccccccccccccccCCCcCccccCHHH
Confidence            4689999999999999999999999999999999876654332222222333455556654

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=98.70  E-value=6.8e-09  Score=73.18  Aligned_cols=60  Identities=22%  Similarity=0.405  Sum_probs=42.7

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||.++++|+||+|.||+++.++.++|+|||+++.......  ......++.+|++||.-
T Consensus       109 l~~lH~~~ivHrDlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~  168 (316)
T cd05620         109 LQFLHSKGIIYRDLKLDNVMLDRDGHIKIADFGMCKENVFGDN--RASTFCGTPDYIAPEIL  168 (316)
T ss_pred             HHHHHHCCeEecCCCHHHeEECCCCCEEeCccCCCeecccCCC--ceeccCCCcCccCHHHH
Confidence            4689999999999999999999999999999998764321111  11223345556666643

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=98.70  E-value=8.2e-09  Score=73.08  Aligned_cols=60  Identities=22%  Similarity=0.364  Sum_probs=42.7

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|++|+|.||+++.++.++|+|||++........  ......++..|++||.-
T Consensus       109 l~~lH~~~ivHrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~  168 (327)
T cd05617         109 LNFLHERGIIYRDLKLDNVLLDADGHIKLTDYGMCKEGLGPGD--TTSTFCGTPNYIAPEIL  168 (327)
T ss_pred             HHHHHHCCeeccCCCHHHEEEeCCCCEEEeccccceeccCCCC--ceecccCCcccCCHHHH
Confidence            4689999999999999999999999999999999864321111  11222344556666543

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=98.70  E-value=1.2e-08  Score=70.56  Aligned_cols=38  Identities=34%  Similarity=0.615  Sum_probs=34.6

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|||+++++|++++|.||+++.+..++|+|||+++..
T Consensus       132 l~~lH~~~i~H~dikp~nili~~~~~~~L~Dfg~~~~~  169 (288)
T cd05061         132 MAYLNAKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDI  169 (288)
T ss_pred             HHHHHhCCCcCCCCChheEEEcCCCcEEECcCCccccc
Confidence            46899999999999999999999999999999998654

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>PRK09188 serine/threonine protein kinase; Provisional

Probab=98.70  E-value=9.7e-09  Score=75.10  Aligned_cols=39  Identities=31%  Similarity=0.536  Sum_probs=35.1

Q ss_pred             CccchhCCccccCC-CCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDL-KSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdl-k~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||+.+++|+|| +|.||+++.++.++|+|||+|+...
T Consensus       124 L~~lH~~gIiHrDL~KP~NILv~~~~~ikLiDFGlA~~~~  163 (365)
T PRK09188        124 LRDLHRAGITHNDLAKPQNWLMGPDGEAAVIDFQLASVFR  163 (365)
T ss_pred             HHHHHHCCCeeCCCCCcceEEEcCCCCEEEEECccceecc
Confidence            46899999999999 8999999888889999999987654

>KOG0577|consensus

Probab=98.70  E-value=5.2e-09  Score=80.72  Aligned_cols=56  Identities=27%  Similarity=0.420  Sum_probs=45.6

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||+.+.|||||+..||+++..+.+||+|||.|.+..+.     ....++|+|++|+..
T Consensus       139 LaYLHS~~~IHRDiKAGNILLse~g~VKLaDFGSAsi~~PA-----nsFvGTPywMAPEVI  194 (948)
T KOG0577|consen  139 LAYLHSHNRIHRDIKAGNILLSEPGLVKLADFGSASIMAPA-----NSFVGTPYWMAPEVI  194 (948)
T ss_pred             HHHHHHhhHHhhhccccceEecCCCeeeeccccchhhcCch-----hcccCCccccchhHh
Confidence            57999999999999999999999999999999998665433     333566777777654

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=98.70  E-value=9.2e-09  Score=72.89  Aligned_cols=39  Identities=36%  Similarity=0.739  Sum_probs=35.3

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||..+++|++|+|.||+++.++.++|+|||++....
T Consensus       131 L~~LH~~~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~  169 (343)
T cd07878         131 LKYIHSAGIIHRDLKPSNVAVNEDCELRILDFGLARQAD  169 (343)
T ss_pred             HHHHHHCCeecccCChhhEEECCCCCEEEcCCccceecC
Confidence            468999999999999999999999999999999987543

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=98.70  E-value=8.2e-09  Score=73.01  Aligned_cols=39  Identities=31%  Similarity=0.679  Sum_probs=35.3

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||..+++|++|+|.||+++.++.++|+|||++....
T Consensus       114 L~~LH~~giiH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~  152 (350)
T cd05573         114 LDSVHKLGFIHRDIKPDNILIDADGHIKLADFGLCKKMN  152 (350)
T ss_pred             HHHHHHCCeeccCCCHHHeEECCCCCEEeecCCCCccCc
Confidence            468999999999999999999999999999999986544

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=98.70  E-value=7.8e-09  Score=72.02  Aligned_cols=61  Identities=26%  Similarity=0.335  Sum_probs=41.5

Q ss_pred             CccchhCCccccCCCCCceEE----ecCCcEEEeeccccccccccCCC-CCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFI----EKNNKVVITDFGLFNFSKLYNSY-TSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill----~~~~~~kl~dfgla~~~~~~~~~-~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||+.+++|+||+|.||++    ...+.++|+|||+++........ .......++.+|.+||.
T Consensus       121 L~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~t~~y~aPE~  186 (317)
T cd07867         121 IHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPEL  186 (317)
T ss_pred             HHHHHhCCEEcCCCCHHHEEEccCCCCCCcEEEeeccceeccCCCcccccccCcceecccccCcHH
Confidence            468999999999999999999    34567999999998754322211 11122233455666654

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=98.69  E-value=9.4e-09  Score=74.05  Aligned_cols=36  Identities=36%  Similarity=0.800  Sum_probs=33.5

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFN   36 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~   36 (93)
                      |.|||+.+++|+||+|.||+++.++.++|+|||++.
T Consensus       114 l~~lH~~~ivHrDlKp~NILl~~~g~~kL~DFGla~  149 (382)
T cd05625         114 VESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCT  149 (382)
T ss_pred             HHHHHhCCeecCCCCHHHEEECCCCCEEEeECCCCc
Confidence            468999999999999999999999999999999874

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=98.69  E-value=1.2e-08  Score=69.76  Aligned_cols=61  Identities=25%  Similarity=0.292  Sum_probs=42.7

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||+.+++|+++++.||+++....++|+|||++.................+..|.+|+.
T Consensus       113 l~~lH~~~i~H~dlkp~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~  173 (269)
T cd05087         113 LLHLHKNNFIHSDLALRNCLLTADLTVKIGDYGLSHNKYKEDYYVTPDQLWVPLRWIAPEL  173 (269)
T ss_pred             HHHHHHCCEeccccCcceEEEcCCCcEEECCccccccccCcceeecCCCcCCcccccCHhH
Confidence            4689999999999999999999999999999999864332222112222233444555554

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>KOG0596|consensus

Probab=98.69  E-value=9.3e-09  Score=78.38  Aligned_cols=66  Identities=20%  Similarity=0.317  Sum_probs=50.5

Q ss_pred             ccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhhhhhhcc
Q psy700            2 GYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEEEKEEEG   68 (93)
Q Consensus         2 ~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~~~~~~~   68 (93)
                      .++|..||||.||+|.|+++. .+.+||+|||+|..............-.+++.|++||+-..-+.+
T Consensus       474 ~~IH~~gIVHSDLKPANFLlV-kG~LKLIDFGIA~aI~~DTTsI~kdsQvGT~NYMsPEAl~~~~s~  539 (677)
T KOG0596|consen  474 KTIHQHGIVHSDLKPANFLLV-KGRLKLIDFGIANAIQPDTTSIVKDSQVGTVNYMSPEALTDMSSS  539 (677)
T ss_pred             HHHHHhceeecCCCcccEEEE-eeeEEeeeechhcccCccccceeeccccCcccccCHHHHhhcccc
Confidence            578999999999999999885 678999999999876655544444444568888888876554444

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=98.69  E-value=6.3e-09  Score=74.40  Aligned_cols=38  Identities=32%  Similarity=0.648  Sum_probs=34.8

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|||+.+++|++|+|.||+++.++.++|+|||++...
T Consensus       144 L~~LH~~~ivHrDLkp~NILl~~~~~ikL~DFG~a~~~  181 (340)
T PTZ00426        144 FEYLQSLNIVYRDLKPENLLLDKDGFIKMTDFGFAKVV  181 (340)
T ss_pred             HHHHHHCCeEccCCCHHHEEECCCCCEEEecCCCCeec
Confidence            46899999999999999999999999999999998654

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=98.69  E-value=6.7e-09  Score=73.56  Aligned_cols=38  Identities=34%  Similarity=0.718  Sum_probs=34.9

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|||+++++|++|+|.||+++.++.++|+|||++...
T Consensus       131 L~~LH~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~  168 (329)
T PTZ00263        131 FEYLHSKDIIYRDLKPENLLLDNKGHVKVTDFGFAKKV  168 (329)
T ss_pred             HHHHHHCCeeecCCCHHHEEECCCCCEEEeeccCceEc
Confidence            46899999999999999999999999999999998654

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=98.68  E-value=1.3e-08  Score=70.32  Aligned_cols=61  Identities=26%  Similarity=0.349  Sum_probs=42.7

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||..+++|++++|.||+++..+.++|+|||++.................+..|.+|+.
T Consensus       133 L~~lH~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~  193 (288)
T cd05093         133 MVYLASQHFVHRDLATRNCLVGENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPES  193 (288)
T ss_pred             HHHHHhCCeeecccCcceEEEccCCcEEeccCCccccccCCceeecCCCCCccccccCHHH
Confidence            4689999999999999999999999999999999865432221112222223445555553

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=98.68  E-value=8.7e-09  Score=71.60  Aligned_cols=38  Identities=37%  Similarity=0.729  Sum_probs=34.8

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|||+++++|++|+|.||+++.++.++|+|||++...
T Consensus       114 l~~lH~~~i~H~dlkp~NIli~~~~~~kl~Dfg~~~~~  151 (291)
T cd05612         114 LEYLHSKEIVYRDLKPENILLDKEGHIKLTDFGFAKKL  151 (291)
T ss_pred             HHHHHHCCeeecCCCHHHeEECCCCCEEEEecCcchhc
Confidence            46899999999999999999999999999999998654

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=98.68  E-value=9.9e-09  Score=72.38  Aligned_cols=37  Identities=38%  Similarity=0.652  Sum_probs=34.2

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNF   37 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~   37 (93)
                      |.|||+.+++|++|++.||+++.++.++|+|||++..
T Consensus       114 l~~lH~~~ivHrdlkp~Nill~~~~~~kL~Dfg~~~~  150 (324)
T cd05589         114 LQYLHENKIVYRDLKLDNLLLDTEGFVKIADFGLCKE  150 (324)
T ss_pred             HHHHHhCCeEecCCCHHHeEECCCCcEEeCcccCCcc
Confidence            4689999999999999999999999999999998764

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=98.68  E-value=1.1e-08  Score=70.39  Aligned_cols=39  Identities=38%  Similarity=0.739  Sum_probs=35.2

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|+|+.+++|++++|.||+++.++.++|+|||++....
T Consensus       121 l~~lH~~~ivH~dikp~Nili~~~~~~kl~dfg~~~~~~  159 (288)
T cd07863         121 LDFLHANCIVHRDLKPENILVTSGGQVKLADFGLARIYS  159 (288)
T ss_pred             HHHHHhCCeecCCCCHHHEEECCCCCEEECccCcccccc
Confidence            468999999999999999999999999999999987543

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=98.68  E-value=1.3e-08  Score=70.45  Aligned_cols=61  Identities=26%  Similarity=0.341  Sum_probs=43.2

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      +.|||.++++|++|+|.||+++.++.++|+|||++.................+..|.+|+.
T Consensus       136 l~~lH~~~i~H~dlkp~Nil~~~~~~~~l~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~  196 (291)
T cd05094         136 MVYLASQHFVHRDLATRNCLVGANLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPES  196 (291)
T ss_pred             HHHHHhCCeeecccCcceEEEccCCcEEECCCCcccccCCCceeecCCCCCcceeecChHH
Confidence            4689999999999999999999999999999999865432221111222223455666664

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=98.68  E-value=1.2e-08  Score=72.16  Aligned_cols=38  Identities=34%  Similarity=0.702  Sum_probs=34.6

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|||+++++|++|++.||+++.++.++|+|||++...
T Consensus       114 l~~lH~~~ivHrDikp~Nill~~~~~ikL~Dfg~~~~~  151 (323)
T cd05615         114 LFFLHRRGIIYRDLKLDNVMLDSEGHIKIADFGMCKEH  151 (323)
T ss_pred             HHHHHHCCeeccCCCHHHeEECCCCCEEEecccccccc
Confidence            46899999999999999999999999999999998643

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=98.67  E-value=1.6e-08  Score=70.86  Aligned_cols=39  Identities=36%  Similarity=0.681  Sum_probs=35.1

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|+|.++++|+++++.||+++.++.++|+|||+++...
T Consensus       147 L~~lH~~gi~H~dlkp~Nill~~~~~~kL~Dfg~~~~~~  185 (314)
T cd05099         147 MEYLESRRCIHRDLAARNVLVTEDNVMKIADFGLARGVH  185 (314)
T ss_pred             HHHHHHCCeeeccccceeEEEcCCCcEEEcccccccccc
Confidence            468999999999999999999999999999999986543

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=98.67  E-value=1.2e-08  Score=73.02  Aligned_cols=38  Identities=29%  Similarity=0.647  Sum_probs=34.5

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|||+.+++|+||+|.||+++..+.++|+|||++...
T Consensus       114 L~~lH~~givHrDLkp~NIli~~~~~vkL~DfG~~~~~  151 (360)
T cd05627         114 IDAIHQLGFIHRDIKPDNLLLDAKGHVKLSDFGLCTGL  151 (360)
T ss_pred             HHHHHHCCeEccCCCHHHEEECCCCCEEEeeccCCccc
Confidence            46899999999999999999999999999999997643

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=98.67  E-value=9.9e-09  Score=73.25  Aligned_cols=39  Identities=38%  Similarity=0.739  Sum_probs=35.3

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||.++++|+||++.||+++.++.++|+|||++....
T Consensus       181 L~~LH~~~ivHrDlkp~NIll~~~~~~kL~DfG~~~~~~  219 (353)
T PLN00034        181 IAYLHRRHIVHRDIKPSNLLINSAKNVKIADFGVSRILA  219 (353)
T ss_pred             HHHHHHCCEeecCCCHHHEEEcCCCCEEEcccccceecc
Confidence            468999999999999999999999999999999987543

>KOG1035|consensus

Probab=98.67  E-value=1e-08  Score=83.23  Aligned_cols=37  Identities=49%  Similarity=0.931  Sum_probs=35.0

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNF   37 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~   37 (93)
                      |.|+|..|+|||||+|.||+++....+||.|||+|..
T Consensus       710 LaYIH~~giIHRDLKP~NIFLd~~~~VKIGDFGLAt~  746 (1351)
T KOG1035|consen  710 LAYIHDQGIIHRDLKPRNIFLDSRNSVKIGDFGLATD  746 (1351)
T ss_pred             HHHHHhCceeeccCCcceeEEcCCCCeeecccccchh
Confidence            4799999999999999999999999999999999976

>KOG0984|consensus

Probab=98.67  E-value=6.9e-09  Score=71.53  Aligned_cols=39  Identities=33%  Similarity=0.752  Sum_probs=34.0

Q ss_pred             CccchhC-CccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHAR-GILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~-~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||++ .+||||++|.|||++..+.+|++|||++...-
T Consensus       161 l~~L~~kL~vIHRDvKPsNiLIn~~GqVKiCDFGIsG~L~  200 (282)
T KOG0984|consen  161 LEFLHSKLSVIHRDVKPSNILINYDGQVKICDFGISGYLV  200 (282)
T ss_pred             HHHHHHHhhhhhccCCcceEEEccCCcEEEcccccceeeh
Confidence            3578875 79999999999999999999999999986543

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=98.66  E-value=1.7e-08  Score=70.02  Aligned_cols=38  Identities=34%  Similarity=0.616  Sum_probs=34.5

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|||+.+++|++++|.||+++.+..++|+|||++...
T Consensus       143 l~~lH~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~  180 (296)
T cd05095         143 MKYLSSLNFVHRDLATRNCLVGKNYTIKIADFGMSRNL  180 (296)
T ss_pred             HHHHHHCCeecccCChheEEEcCCCCEEeccCcccccc
Confidence            46899999999999999999998899999999998654

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=98.66  E-value=1.1e-08  Score=71.53  Aligned_cols=38  Identities=37%  Similarity=0.758  Sum_probs=34.7

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|||+++++|++|+|.||+++..+.++|+|||++...
T Consensus       117 L~~lH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~  154 (309)
T cd07872         117 LAYCHRRKVLHRDLKPQNLLINERGELKLADFGLARAK  154 (309)
T ss_pred             HHHHHHCCeecCCCCHHHEEECCCCCEEECccccceec
Confidence            46899999999999999999999999999999998654

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>PHA03209 serine/threonine kinase US3; Provisional

Probab=98.66  E-value=1e-08  Score=73.55  Aligned_cols=38  Identities=45%  Similarity=0.844  Sum_probs=34.7

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|||.++++|++|++.||++.....++|+|||++++.
T Consensus       170 L~~LH~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~  207 (357)
T PHA03209        170 LRYLHAQRIIHRDVKTENIFINDVDQVCIGDLGAAQFP  207 (357)
T ss_pred             HHHHHHCCeecCCCCHHHEEECCCCCEEEecCcccccc
Confidence            46899999999999999999999999999999998653

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=98.66  E-value=1.6e-08  Score=68.21  Aligned_cols=38  Identities=32%  Similarity=0.640  Sum_probs=34.4

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|||.++++|+++++.||+++.++.++|+|||++...
T Consensus       107 L~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~  144 (252)
T cd05084         107 MEYLESKHCIHRDLAARNCLVTEKNVLKISDFGMSREE  144 (252)
T ss_pred             HHHHHhCCccccccchheEEEcCCCcEEECccccCccc
Confidence            46899999999999999999998889999999997643

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>KOG0201|consensus

Probab=98.66  E-value=1.7e-08  Score=74.91  Aligned_cols=62  Identities=23%  Similarity=0.379  Sum_probs=51.0

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEEE   63 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~~   63 (93)
                      +.|+|..+.+||+++..||++...+.++|+|||++.+....... .....++|+|++|+-...
T Consensus       124 l~ylH~~~kiHrDIKaanil~s~~g~vkl~DfgVa~ql~~~~~r-r~tfvGTPfwMAPEVI~~  185 (467)
T KOG0201|consen  124 LDYLHSEKKIHRDIKAANILLSESGDVKLADFGVAGQLTNTVKR-RKTFVGTPFWMAPEVIKQ  185 (467)
T ss_pred             hhhhhhcceecccccccceeEeccCcEEEEecceeeeeechhhc-cccccccccccchhhhcc
Confidence            46999999999999999999998899999999998776644433 356677888888887653

>KOG0611|consensus

Probab=98.66  E-value=5.9e-09  Score=77.72  Aligned_cols=38  Identities=42%  Similarity=0.794  Sum_probs=34.7

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      +.|||.++++||||+..|||++.+.++|++|||++.+.
T Consensus       166 VhYCHknrVvHRDLKLENILLD~N~NiKIADFGLSNly  203 (668)
T KOG0611|consen  166 VHYCHKNRVVHRDLKLENILLDQNNNIKIADFGLSNLY  203 (668)
T ss_pred             HHHHhhccceecccchhheeecCCCCeeeeccchhhhh
Confidence            35899999999999999999999999999999997543

>KOG0983|consensus

Probab=98.66  E-value=1.7e-08  Score=72.07  Aligned_cols=55  Identities=22%  Similarity=0.437  Sum_probs=38.9

Q ss_pred             cchh-CCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChh
Q psy700            3 YLHA-RGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKE   59 (93)
Q Consensus         3 ~lhs-~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~   59 (93)
                      ||-. ++|||||++|.|||++..+.+||+|||++.+.-....  ....++-+.|++|+
T Consensus       206 YLKeKH~viHRDvKPSNILlDe~GniKlCDFGIsGrlvdSkA--htrsAGC~~YMaPE  261 (391)
T KOG0983|consen  206 YLKEKHGVIHRDVKPSNILLDERGNIKLCDFGISGRLVDSKA--HTRSAGCAAYMAPE  261 (391)
T ss_pred             HHHHhcceeecccCccceEEccCCCEEeecccccceeecccc--cccccCCccccCcc
Confidence            4443 5899999999999999999999999999865543332  23333434455544

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=98.66  E-value=1.3e-08  Score=73.17  Aligned_cols=36  Identities=33%  Similarity=0.756  Sum_probs=33.7

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFN   36 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~   36 (93)
                      |.|||+.+++|+||+|.||+++.++.++|+|||+++
T Consensus       114 L~~LH~~givHrDlkp~NIll~~~~~~kl~DfGla~  149 (377)
T cd05629         114 IEAVHKLGFIHRDIKPDNILIDRGGHIKLSDFGLST  149 (377)
T ss_pred             HHHHHhCCeeccCCCHHHEEECCCCCEEEeeccccc
Confidence            468999999999999999999999999999999985

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>PTZ00036 glycogen synthase kinase; Provisional

Probab=98.65  E-value=1.5e-08  Score=74.93  Aligned_cols=39  Identities=33%  Similarity=0.619  Sum_probs=33.8

Q ss_pred             CccchhCCccccCCCCCceEEecCC-cEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNN-KVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~-~~kl~dfgla~~~~   39 (93)
                      |.|||+.+++||||+|.||+++... .++|+|||+|+...
T Consensus       183 L~yLH~~~IiHrDLKp~NILl~~~~~~vkL~DFGla~~~~  222 (440)
T PTZ00036        183 LAYIHSKFICHRDLKPQNLLIDPNTHTLKLCDFGSAKNLL  222 (440)
T ss_pred             HHHHHHCCEecCCcCHHHEEEcCCCCceeeeccccchhcc
Confidence            4689999999999999999998554 69999999987543

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=98.65  E-value=1.9e-08  Score=69.03  Aligned_cols=61  Identities=28%  Similarity=0.461  Sum_probs=43.4

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||.++++|+++++.||++.....++|+|||+++................+..|.+|+.
T Consensus       122 l~~LH~~~i~H~di~p~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~~PE~  182 (279)
T cd05057         122 MSYLEEKRLVHRDLAARNVLVKTPQHVKITDFGLAKLLDVDEKEYHAEGGKVPIKWMALES  182 (279)
T ss_pred             HHHHHhCCEEecccCcceEEEcCCCeEEECCCcccccccCcccceecCCCcccccccCHHH
Confidence            4689999999999999999999888999999999876543332222222223445555553

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=98.65  E-value=1.3e-08  Score=72.16  Aligned_cols=37  Identities=32%  Similarity=0.767  Sum_probs=34.1

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNF   37 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~   37 (93)
                      |.|||+++++|++|++.||+++..+.++|+|||++..
T Consensus       109 l~~lH~~~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~  145 (329)
T cd05588         109 LNFLHERGIIYRDLKLDNVLLDAEGHIKLTDYGMCKE  145 (329)
T ss_pred             HHHHHHCCeEecCCCHHHeEECCCCCEEECcCccccc
Confidence            4689999999999999999999999999999999864

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>KOG0033|consensus

Probab=98.65  E-value=1.7e-08  Score=71.13  Aligned_cols=57  Identities=28%  Similarity=0.453  Sum_probs=41.0

Q ss_pred             CccchhCCccccCCCCCceEEec---CCcEEEeeccccccccccCCCCCCCCCCCCCCCChh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEK---NNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKE   59 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~---~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~   59 (93)
                      |.|||.++|+|||++|.|+++..   ...+||++||+|....  ......+..+.|-+++|+
T Consensus       123 l~yCH~n~IvHRDvkP~nllLASK~~~A~vKL~~FGvAi~l~--~g~~~~G~~GtP~fmaPE  182 (355)
T KOG0033|consen  123 LAYCHSNGIVHRDLKPENLLLASKAKGAAVKLADFGLAIEVN--DGEAWHGFAGTPGYLSPE  182 (355)
T ss_pred             HHHHHhcCceeccCChhheeeeeccCCCceeecccceEEEeC--CccccccccCCCcccCHH
Confidence            46999999999999999999964   3568999999987665  223333444444444443

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=98.65  E-value=1.4e-08  Score=73.29  Aligned_cols=37  Identities=35%  Similarity=0.697  Sum_probs=33.8

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNF   37 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~   37 (93)
                      |.|||..+++|+||+|.||+++..+.++|+|||++..
T Consensus       114 L~~LH~~givHrDlKp~Nili~~~~~~kL~DFGl~~~  150 (381)
T cd05626         114 IESVHKMGFIHRDIKPDNILIDLDGHIKLTDFGLCTG  150 (381)
T ss_pred             HHHHHhCCeeecCCcHHHEEECCCCCEEEeeCcCCcc
Confidence            4689999999999999999999889999999998753

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=98.65  E-value=1.3e-08  Score=71.89  Aligned_cols=60  Identities=25%  Similarity=0.394  Sum_probs=42.8

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+.+++|++|++.||+++.++.++|+|||++........  ......++..|+|||.-
T Consensus       109 l~~LH~~~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~  168 (316)
T cd05619         109 LQFLHSKGIVYRDLKLDNILLDTDGHIKIADFGMCKENMLGDA--KTCTFCGTPDYIAPEIL  168 (316)
T ss_pred             HHHHHhCCeEeCCCCHHHEEECCCCCEEEccCCcceECCCCCC--ceeeecCCccccCHHHH
Confidence            4689999999999999999999999999999999764321111  11222345556666643

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=98.65  E-value=1.9e-08  Score=71.09  Aligned_cols=62  Identities=26%  Similarity=0.421  Sum_probs=43.3

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||.++++|++|+|.||+++....++|+|||+++................+..|++|+.-
T Consensus       147 l~~LH~~givH~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  208 (334)
T cd05100         147 MEYLASQKCIHRDLAARNVLVTEDNVMKIADFGLARDVHNIDYYKKTTNGRLPVKWMAPEAL  208 (334)
T ss_pred             HHHHHHCCeeccccccceEEEcCCCcEEECCcccceecccccccccccCCCcCceEcCHHHh
Confidence            46899999999999999999998999999999998654322222112222223456666543

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=98.64  E-value=2e-08  Score=69.39  Aligned_cols=59  Identities=29%  Similarity=0.343  Sum_probs=42.3

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||+.+++|++|++.||+++..+.++|+|||++........  ......++..|.+|+.
T Consensus       110 l~~lH~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~--~~~~~~g~~~y~aPE~  168 (280)
T cd05608         110 LEHLHQRRIIYRDLKPENVLLDNDGNVRISDLGLAVELKDGQS--KTKGYAGTPGFMAPEL  168 (280)
T ss_pred             HHHHHHCCcccCCCCHHHEEECCCCCEEEeeCccceecCCCCc--cccccCCCcCccCHHH
Confidence            4689999999999999999999888999999999865432221  1112233445555554

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=98.63  E-value=2.1e-08  Score=68.52  Aligned_cols=61  Identities=25%  Similarity=0.329  Sum_probs=43.3

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      +.|+|.++++|+++++.||+++.++.++|+|||++.................+..|.+|+.
T Consensus       135 l~~lH~~~i~h~dlkp~nili~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~  195 (280)
T cd05049         135 MVYLASQHFVHRDLATRNCLVGYDLVVKIGDFGMSRDVYTTDYYRVGGHTMLPIRWMPPES  195 (280)
T ss_pred             HHHHhhCCeeccccccceEEEcCCCeEEECCcccceecccCcceecCCCCcccceecChhh
Confidence            3689999999999999999999999999999999865432222222222233455666664

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=98.63  E-value=1.7e-08  Score=72.46  Aligned_cols=36  Identities=36%  Similarity=0.808  Sum_probs=33.4

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFN   36 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~   36 (93)
                      |.|||..+++|+||+|.||+++..+.++|+|||++.
T Consensus       114 l~~lH~~~ivHrDlkp~Nill~~~~~ikL~DFG~a~  149 (376)
T cd05598         114 IESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCT  149 (376)
T ss_pred             HHHHHHCCeEeCCCCHHHEEECCCCCEEEEeCCCCc
Confidence            468999999999999999999999999999999874

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=98.63  E-value=1.8e-08  Score=69.41  Aligned_cols=61  Identities=25%  Similarity=0.322  Sum_probs=42.8

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      +.|||..+++|++++|.||++.....++|+|||++.................+..|.+|+.
T Consensus       135 l~~LH~~~i~H~dlkp~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~  195 (280)
T cd05092         135 MVYLASLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPES  195 (280)
T ss_pred             HHHHHHCCeecccccHhhEEEcCCCCEEECCCCceeEcCCCceeecCCCccccccccCHHH
Confidence            4689999999999999999999889999999999865432222122222223455666653

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=98.63  E-value=1.7e-08  Score=72.02  Aligned_cols=38  Identities=26%  Similarity=0.630  Sum_probs=34.6

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|||..+++|++|+|.||+++.++.++|+|||++...
T Consensus       114 L~~lH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~  151 (364)
T cd05599         114 IDSIHKLGYIHRDIKPDNLLLDAKGHIKLSDFGLCTGL  151 (364)
T ss_pred             HHHHHHCCeEeccCCHHHeEECCCCCEEEeecccceec
Confidence            46899999999999999999999999999999997643

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=98.63  E-value=1.9e-08  Score=68.54  Aligned_cols=39  Identities=33%  Similarity=0.641  Sum_probs=35.2

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||+.+++|++++|.||+++.+..++++|||+++...
T Consensus       126 l~~lH~~~i~H~dikp~nili~~~~~~kl~dfg~~~~~~  164 (273)
T cd05074         126 MEYLSSKNFIHRDLAARNCMLNENMTVCVADFGLSKKIY  164 (273)
T ss_pred             HHHHHhCCEeecccchhhEEEcCCCCEEECccccccccc
Confidence            468999999999999999999988999999999987553

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=98.62  E-value=2.5e-08  Score=67.14  Aligned_cols=61  Identities=26%  Similarity=0.379  Sum_probs=42.7

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      +.|||.++++|+++++.||+++.+..++++|||++.................+..|.||+.
T Consensus       106 l~~lH~~~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~y~~PE~  166 (251)
T cd05041         106 MEYLESKNCIHRDLAARNCLVGENNVLKISDFGMSREEEGGIYTVSDGLKQIPIKWTAPEA  166 (251)
T ss_pred             HHHHHhCCEehhhcCcceEEEcCCCcEEEeeccccccccCCcceeccccCcceeccCChHh
Confidence            4689999999999999999999999999999999865432111111122223455666654

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=98.62  E-value=1.9e-08  Score=70.21  Aligned_cols=39  Identities=33%  Similarity=0.652  Sum_probs=35.0

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||..+++|++++|.||+++.++.++|+|||++....
T Consensus       153 L~~lH~~gi~H~dlkp~Nill~~~~~~kL~dfg~a~~~~  191 (307)
T cd05098         153 MEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIH  191 (307)
T ss_pred             HHHHHHCCcccccccHHheEEcCCCcEEECCCccccccc
Confidence            468999999999999999999988999999999986543

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=98.62  E-value=2.7e-08  Score=67.73  Aligned_cols=39  Identities=33%  Similarity=0.573  Sum_probs=35.3

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      +.|||.++++|+++++.||+++.+..++++|||++....
T Consensus       119 l~~Lh~~~i~H~di~p~nili~~~~~~~l~dfg~~~~~~  157 (266)
T cd05033         119 MKYLSEMNYVHRDLAARNILVNSNLVCKVSDFGLSRRLE  157 (266)
T ss_pred             HHHHHhCCcccCCCCcceEEEcCCCCEEECccchhhccc
Confidence            368999999999999999999999999999999987654

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>KOG0664|consensus

Probab=98.62  E-value=5e-09  Score=74.94  Aligned_cols=39  Identities=38%  Similarity=0.668  Sum_probs=36.1

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||+.+|+||||+|.|++++.+..+|++|||+++...
T Consensus       169 LKYLHsA~ILHRDIKPGNLLVNSNCvLKICDFGLARvee  207 (449)
T KOG0664|consen  169 LKYLHTANILHRDIKPGNLLVNSNCILKICDFGLARTWD  207 (449)
T ss_pred             hHHHhhcchhhccCCCccEEeccCceEEecccccccccc
Confidence            579999999999999999999999999999999998654

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=98.62  E-value=1.8e-08  Score=70.87  Aligned_cols=59  Identities=27%  Similarity=0.357  Sum_probs=42.5

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||+.+++|++|++.||+++.++.++|+|||++........  ......++..|++|+.
T Consensus       111 l~~lH~~~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~--~~~~~~g~~~y~aPE~  169 (318)
T cd05582         111 LDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEK--KAYSFCGTVEYMAPEV  169 (318)
T ss_pred             HHHHHHCCEecCCCCHHHeEECCCCcEEEeeccCCcccCCCCC--ceecccCChhhcCHHH
Confidence            4689999999999999999999999999999999865432211  1112234455565654

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>KOG0579|consensus

Probab=98.62  E-value=1.7e-08  Score=78.69  Aligned_cols=72  Identities=22%  Similarity=0.348  Sum_probs=51.3

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhhhhhhccchhhc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEEEKEEEGEEEDN   73 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~~~~~~~~~~~~   73 (93)
                      |.|||+++||||||+..|||++.++.++|+|||++.-...... ......+.|+|++|+.-.+.-..|--+|+
T Consensus       143 Ln~LHs~~iIHRDLKAGNiL~TldGdirLADFGVSAKn~~t~q-kRDsFIGTPYWMAPEVvmCET~KD~PYDy  214 (1187)
T KOG0579|consen  143 LNWLHSQNIIHRDLKAGNILLTLDGDIRLADFGVSAKNKSTRQ-KRDSFIGTPYWMAPEVVMCETFKDQPYDY  214 (1187)
T ss_pred             HHHHhhcchhhhhccccceEEEecCcEeeecccccccchhHHh-hhccccCCcccccchheeeccccCCCchh
Confidence            5799999999999999999999999999999998643221111 12333456777777766555555555544

>KOG0587|consensus

Probab=98.62  E-value=2.4e-08  Score=78.97  Aligned_cols=71  Identities=23%  Similarity=0.304  Sum_probs=59.3

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhhhhhhccchhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEEEKEEEGEEED   72 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~~~~~~~~~~~   72 (93)
                      +.+||...++|||++-.||+++..+.+||+|||++....... .......++|+|++|+..++.++.+...|
T Consensus       136 l~HLH~nkviHRDikG~NiLLT~e~~VKLvDFGvSaQldsT~-grRnT~iGtP~WMAPEViac~e~~d~tyd  206 (953)
T KOG0587|consen  136 LAHLHNNKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDSTV-GRRNTFIGTPYWMAPEVIACDESPDATYD  206 (953)
T ss_pred             HHHHhhcceeeecccCceEEEeccCcEEEeeeeeeeeeeccc-ccccCcCCCcccccceeeecccCCCCCcc
Confidence            357889999999999999999999999999999987665333 34455677899999999999888887766

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=98.61  E-value=2.7e-08  Score=73.00  Aligned_cols=61  Identities=26%  Similarity=0.402  Sum_probs=43.6

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||..+++|++|++.||+++.+..++|+|||++.................+..|++|+.
T Consensus       250 L~~LH~~~ivH~dikp~Nill~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~  310 (400)
T cd05105         250 MEFLASKNCVHRDLAARNVLLAQGKIVKICDFGLARDIMHDSNYVSKGSTFLPVKWMAPES  310 (400)
T ss_pred             HHHHHhCCeeCCCCChHhEEEeCCCEEEEEeCCcceeccccccccccCCcCCCcceEChhh
Confidence            4689999999999999999999989999999999875433222222222233445555554

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>KOG0666|consensus

Probab=98.61  E-value=1.3e-08  Score=73.71  Aligned_cols=62  Identities=27%  Similarity=0.314  Sum_probs=47.8

Q ss_pred             CccchhCCccccCCCCCceEEecC----CcEEEeeccccccccccCCC-CCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKN----NKVVITDFGLFNFSKLYNSY-TSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~----~~~kl~dfgla~~~~~~~~~-~~~~~~~~~~~~~p~e~~   62 (93)
                      +.|||++=|+||||+|.||++..+    +.+|++|||+++.....-.. ......--++||.+||-.
T Consensus       145 v~YLH~NWvlHRDLKPaNIlvmgdgperG~VKIaDlGlaR~~~~plkpl~s~d~VVVTiWYRAPELL  211 (438)
T KOG0666|consen  145 VHYLHSNWVLHRDLKPANILVMGDGPERGRVKIADLGLARLFNNPLKPLASLDPVVVTIWYRAPELL  211 (438)
T ss_pred             hHHHhhhheeeccCCcceEEEeccCCccCeeEeecccHHHHhhccccccccCCceEEEEEecChHHh
Confidence            479999999999999999999877    89999999999876533322 244445567788777653

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=98.61  E-value=3.1e-08  Score=67.30  Aligned_cols=60  Identities=32%  Similarity=0.519  Sum_probs=43.2

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      +.|||..+++|+++++.||+++.++.++|+|||++....... .........+..|.+|+.
T Consensus       116 l~~lH~~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~~y~aPE~  175 (261)
T cd05068         116 MAYLEAQNYIHRDLAARNVLVGENNICKVADFGLARVIKEDI-YEAREGAKFPIKWTAPEA  175 (261)
T ss_pred             HHHHHhCCeeeccCCcceEEEcCCCCEEECCcceEEEccCCc-ccccCCCcCceeccCccc
Confidence            368999999999999999999999999999999987654221 111222223455666663

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=98.60  E-value=3.5e-08  Score=66.67  Aligned_cols=62  Identities=29%  Similarity=0.472  Sum_probs=45.3

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCC-CCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSY-TSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~-~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||..+++|+++++.||+++.++.++++|||++......... ........+.+|.||+.-
T Consensus       110 L~~lH~~~i~H~di~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~pE~~  172 (257)
T cd05040         110 MRYLESKRFIHRDLAARNILLASDDKVKIGDFGLMRALPQNEDHYVMEEHLKVPFAWCAPESL  172 (257)
T ss_pred             HHHHHhCCccccccCcccEEEecCCEEEeccccccccccccccceecccCCCCCceecCHHHh
Confidence            46899999999999999999999999999999998765432211 112223345667777743

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=98.59  E-value=3.3e-08  Score=68.14  Aligned_cols=39  Identities=38%  Similarity=0.713  Sum_probs=35.1

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|+|+++++|++++|.||+++.++.++|+|||+++...
T Consensus       122 L~~lH~~gi~H~dlkp~Nil~~~~~~~~l~dfg~~~~~~  160 (284)
T cd05079         122 MDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIE  160 (284)
T ss_pred             HHHHHHCCeeecccchheEEEcCCCCEEECCCccccccc
Confidence            468999999999999999999988999999999987543

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=98.59  E-value=2.5e-08  Score=69.23  Aligned_cols=61  Identities=26%  Similarity=0.308  Sum_probs=43.4

Q ss_pred             CccchhCCccccCCCCCceEEec----CCcEEEeeccccccccccCC-CCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEK----NNKVVITDFGLFNFSKLYNS-YTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~----~~~~kl~dfgla~~~~~~~~-~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||+.+++|++|++.||+++.    .+.++++|||++........ .........+.+|.+|+.
T Consensus       121 l~~lH~~~i~h~dlkp~Nil~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~  186 (316)
T cd07842         121 VHYLHSNWVLHRDLKPANILVMGEGPERGVVKIGDLGLARLFNAPLKPLADLDPVVVTIWYRAPEL  186 (316)
T ss_pred             HHHHHhCCEeeCCCCHHHEEEcCCCCccceEEECCCccccccCCCcccccccCCccccccccCHHH
Confidence            46899999999999999999998    88899999999876543322 111222233455566664

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=98.58  E-value=3.7e-08  Score=67.17  Aligned_cols=39  Identities=31%  Similarity=0.613  Sum_probs=35.0

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||.++++|++|+|.||+++.+..++|+|||++....
T Consensus       108 l~~lH~~~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~  146 (257)
T cd05115         108 MKYLEGKNFVHRDLAARNVLLVNQHYAKISDFGLSKALG  146 (257)
T ss_pred             HHHHHhcCeeecccchheEEEcCCCcEEeccCCcccccc
Confidence            468999999999999999999999999999999986543

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=98.58  E-value=2.5e-08  Score=70.23  Aligned_cols=59  Identities=25%  Similarity=0.393  Sum_probs=42.3

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||+.+++|++|++.||+++.++.++|+|||+++........  .....++..|++|+.
T Consensus       109 l~~LH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~--~~~~~g~~~y~aPE~  167 (318)
T cd05570         109 LQFLHERGIIYRDLKLDNVLLDSEGHIKIADFGMCKEGILGGVT--TSTFCGTPDYIAPEI  167 (318)
T ss_pred             HHHHHhCCeEccCCCHHHeEECCCCcEEecccCCCeecCcCCCc--ccceecCccccCHHH
Confidence            46899999999999999999999999999999997643222211  112234455566654

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=98.57  E-value=3.6e-08  Score=68.90  Aligned_cols=61  Identities=25%  Similarity=0.405  Sum_probs=43.0

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||+++++|++++|.||+++.+..++++|||++.................+..|++|+.
T Consensus       154 l~~lH~~~ivH~dlkp~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~  214 (302)
T cd05055         154 MAFLASKNCIHRDLAARNVLLTHGKIVKICDFGLARDIMNDSNYVVKGNARLPVKWMAPES  214 (302)
T ss_pred             HHHHHHCCeehhhhccceEEEcCCCeEEECCCcccccccCCCceeecCCCCcccccCCHhh
Confidence            4689999999999999999999888999999999865433222111222233455666663

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=98.57  E-value=3.3e-08  Score=67.01  Aligned_cols=57  Identities=26%  Similarity=0.469  Sum_probs=42.7

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|+|+++++|++|+|.||+++.++.++++|||++.......     .....+..|+||+.-
T Consensus       115 l~~lH~~~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~-----~~~~~~~~y~aPE~~  171 (256)
T cd05082         115 MEYLEANNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQ-----DTGKLPVKWTAPEAL  171 (256)
T ss_pred             HHHHHhCCEeccccchheEEEcCCCcEEecCCccceeccccC-----CCCccceeecCHHHH
Confidence            468999999999999999999999999999999876433211     122334566777643

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=98.57  E-value=4e-08  Score=66.50  Aligned_cols=62  Identities=24%  Similarity=0.261  Sum_probs=43.4

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCC-CCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTS-NEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~-~~~~~~~~~~~p~e~~   62 (93)
                      |.|||..+++|+++++.||+++.++.++|+|||++........... .....++.+|.||+..
T Consensus       117 l~~lH~~~i~H~dl~p~nilv~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  179 (263)
T cd06625         117 VEYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKRLQTICSSGTGMKSVTGTPYWMSPEVI  179 (263)
T ss_pred             HHHHHhCCeecCCCCHHHEEEcCCCCEEEeecccceeccccccccccccCCCcCccccCccee
Confidence            4689999999999999999999889999999999865432221111 1222344556666543

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>KOG0612|consensus

Probab=98.57  E-value=3.3e-08  Score=80.00  Aligned_cols=59  Identities=24%  Similarity=0.363  Sum_probs=45.6

Q ss_pred             ccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhh
Q psy700            2 GYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEE   60 (93)
Q Consensus         2 ~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e   60 (93)
                      .-+|+.|+||||++|.|||++..+.++|+|||.+-..............++|-|.+|+-
T Consensus       189 dslH~mgyVHRDiKPDNvLld~~GHikLADFGsClkm~~dG~V~s~~aVGTPDYISPEv  247 (1317)
T KOG0612|consen  189 DSLHSMGYVHRDIKPDNVLLDKSGHIKLADFGSCLKMDADGTVRSSVAVGTPDYISPEV  247 (1317)
T ss_pred             HHHHhccceeccCCcceeEecccCcEeeccchhHHhcCCCCcEEeccccCCCCccCHHH
Confidence            34899999999999999999999999999999765555445455555566666655554

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=98.56  E-value=3.1e-08  Score=67.91  Aligned_cols=62  Identities=29%  Similarity=0.360  Sum_probs=43.9

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||..+++|+++++.||++.....++++|||+++................+..|.||+.-
T Consensus       130 l~~LH~~~i~H~di~p~nil~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~apE~~  191 (280)
T cd05043         130 MSYLHKRGVIHKDIAARNCVIDEELQVKITDNALSRDLFPMDYHCLGDNENRPVKWMALESL  191 (280)
T ss_pred             HHHHHHCCEeecccCHhhEEEcCCCcEEECCCCCcccccCCceEEeCCCCCcchhccCHHHH
Confidence            46899999999999999999998899999999998654322221122223345556666643

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=98.56  E-value=4.4e-08  Score=67.35  Aligned_cols=39  Identities=36%  Similarity=0.716  Sum_probs=35.1

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||.++++|++|+|.||+++.+..++|+|||++....
T Consensus       120 l~~lH~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~  158 (283)
T cd05080         120 MAYLHSQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVP  158 (283)
T ss_pred             HHHHHHCCeeccccChheEEEcCCCcEEEeecccccccC
Confidence            468999999999999999999988999999999987544

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=98.56  E-value=5.3e-08  Score=73.89  Aligned_cols=39  Identities=33%  Similarity=0.540  Sum_probs=34.8

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||..+++|+|+++.||+++.+..++++|||++....
T Consensus       322 L~~lH~~~ivHrDLKp~NILl~~~~~~kL~DFGla~~~~  360 (507)
T PLN03224        322 LRKLHRIGIVHRDIKPENLLVTVDGQVKIIDFGAAVDMC  360 (507)
T ss_pred             HHHHHHCCeecCCCchHhEEECCCCcEEEEeCcCccccc
Confidence            468999999999999999999988999999999986543

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=98.56  E-value=3.1e-08  Score=66.69  Aligned_cols=38  Identities=39%  Similarity=0.788  Sum_probs=34.4

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.+||+.+++|++|+|.||+++.++.++|+|||++...
T Consensus       111 L~~Lh~~~i~H~dikp~NIl~~~~~~~~l~Dfg~~~~~  148 (260)
T PF00069_consen  111 LAYLHSKGIVHRDIKPENILLDENGEVKLIDFGSSVKL  148 (260)
T ss_dssp             HHHHHHTTEEESSBSGGGEEESTTSEEEESSGTTTEES
T ss_pred             cccccccccccccccccccccccccccccccccccccc
Confidence            46899999999999999999999999999999997643

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=98.55  E-value=3.9e-08  Score=67.76  Aligned_cols=61  Identities=31%  Similarity=0.462  Sum_probs=42.8

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|+|.++++|+++++.||++..++.++++|||++.................+..|.+|+.
T Consensus       143 L~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~  203 (288)
T cd05050         143 MAYLSERKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKASENDAIPIRWMPPES  203 (288)
T ss_pred             HHHHHhCCeecccccHhheEecCCCceEECccccceecccCccccccCCCccChhhcCHHH
Confidence            4689999999999999999999999999999999765432222222222223444665653

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>KOG0588|consensus

Probab=98.55  E-value=3e-08  Score=76.89  Aligned_cols=58  Identities=28%  Similarity=0.410  Sum_probs=43.6

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      +.|||..+++|||+++.|++++....+|++|||+|.+-....   -..+.++...|+.||.
T Consensus       125 v~yCH~~~icHRDLKpENlLLd~~~nIKIADFGMAsLe~~gk---lLeTSCGSPHYA~PEI  182 (786)
T KOG0588|consen  125 VSYCHAFNICHRDLKPENLLLDVKNNIKIADFGMASLEVPGK---LLETSCGSPHYAAPEI  182 (786)
T ss_pred             HHHHhhhcceeccCCchhhhhhcccCEeeeccceeecccCCc---cccccCCCcccCCchh
Confidence            469999999999999999999988889999999986544333   2333455555555553

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=98.55  E-value=5.6e-08  Score=66.17  Aligned_cols=39  Identities=33%  Similarity=0.684  Sum_probs=35.1

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||.++++|++++|.||++..++.++++|||++....
T Consensus       117 l~~lH~~~i~H~dlkp~nil~~~~~~~kl~df~~~~~~~  155 (263)
T cd05052         117 MEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMT  155 (263)
T ss_pred             HHHHHhCCEeecccCcceEEEcCCCcEEeCCCccccccc
Confidence            468999999999999999999999999999999986543

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=98.55  E-value=6.3e-08  Score=66.09  Aligned_cols=61  Identities=23%  Similarity=0.377  Sum_probs=44.0

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|+|+.+++|++++|.||+++.++.++|+|||++......... .......+..|.+|+..
T Consensus       115 L~~lH~~~i~H~dl~p~Nill~~~~~~~L~dfg~~~~~~~~~~~-~~~~~~~~~~y~~PE~~  175 (262)
T cd05071         115 MAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYT-ARQGAKFPIKWTAPEAA  175 (262)
T ss_pred             HHHHHHCCccccccCcccEEEcCCCcEEeccCCceeeccccccc-cccCCcccceecCHhHh
Confidence            46899999999999999999999999999999998654432221 12223345556666643

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=98.54  E-value=6.5e-08  Score=64.94  Aligned_cols=61  Identities=28%  Similarity=0.380  Sum_probs=44.1

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      +.|||+.+++|+++++.||+++..+.++++|||++............ ....+..|.+|+..
T Consensus       116 l~~lh~~~~~h~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~-~~~~~~~y~~Pe~~  176 (258)
T smart00219      116 MEYLESKNFIHRDLAARNCLVGENLVVKISDFGLSRDLYDDDYYKKK-GGKLPIRWMAPESL  176 (258)
T ss_pred             HHHHhcCCeeecccccceEEEccCCeEEEcccCCceecccccccccc-cCCCcccccChHHh
Confidence            46899999999999999999999999999999998765543222221 11234556666543

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=98.54  E-value=4.9e-08  Score=67.29  Aligned_cols=39  Identities=26%  Similarity=0.455  Sum_probs=34.9

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||..+++|++|+|.||+++.+..++|+|||++....
T Consensus       108 l~~lH~~~ivH~dikp~Nili~~~~~~~l~Dfg~~~~~~  146 (277)
T cd05607         108 ILHLHSMDIVYRDMKPENVLLDDQGNCRLSDLGLAVELK  146 (277)
T ss_pred             HHHHHHCCEEEccCChHhEEEcCCCCEEEeeceeeeecC
Confidence            468999999999999999999999999999999976543

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>KOG1026|consensus

Probab=98.54  E-value=2.3e-08  Score=78.48  Aligned_cols=62  Identities=27%  Similarity=0.358  Sum_probs=55.6

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.||.++.++||||-.+|||++.+..+||+|||+++-......+........|+.++|||.=
T Consensus       616 M~YLs~~~FVHRDLATRNCLVge~l~VKIsDfGLsRdiYssDYYk~~~~t~lPIRWMppEsI  677 (774)
T KOG1026|consen  616 MEYLSSHHFVHRDLATRNCLVGENLVVKISDFGLSRDIYSSDYYKVRGNTLLPIRWMPPESI  677 (774)
T ss_pred             HHHHHhCcccccchhhhhceeccceEEEecccccchhhhhhhhhcccCCceeeeecCCHHHh
Confidence            46888999999999999999999999999999999988877777788788889999999864

>KOG0194|consensus

Probab=98.54  E-value=2.2e-08  Score=75.38  Aligned_cols=59  Identities=27%  Similarity=0.416  Sum_probs=45.0

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||+.++|||||-.+|||++.+..+|++|||+++....+...  ......|+-|.+||-
T Consensus       275 l~YLh~k~~IHRDIAARNcL~~~~~~vKISDFGLs~~~~~~~~~--~~~~klPirWLAPEt  333 (474)
T KOG0194|consen  275 LEYLHSKNCIHRDIAARNCLYSKKGVVKISDFGLSRAGSQYVMK--KFLKKLPIRWLAPET  333 (474)
T ss_pred             HHHHHHCCCcchhHhHHHheecCCCeEEeCccccccCCcceeec--cccccCcceecChhh
Confidence            57999999999999999999998888999999998766522221  112356776666654

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=98.54  E-value=4.4e-08  Score=67.26  Aligned_cols=39  Identities=41%  Similarity=0.734  Sum_probs=35.3

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||.++++|+++++.||+++.++.++|+|||++....
T Consensus       121 L~~LH~~~i~H~dlkp~nili~~~~~~~l~dfg~~~~~~  159 (284)
T cd05081         121 MEYLGSKRYVHRDLATRNILVESENRVKIGDFGLTKVLP  159 (284)
T ss_pred             HHHHHHCCceeccCCHhhEEECCCCeEEECCCccccccc
Confidence            468999999999999999999988999999999987654

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=98.54  E-value=5.8e-08  Score=65.44  Aligned_cols=39  Identities=21%  Similarity=0.382  Sum_probs=33.9

Q ss_pred             CccchhCCccccCCCCCceEEecCC-------cEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNN-------KVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~-------~~kl~dfgla~~~~   39 (93)
                      |.|||.++++|++|+|.||+++...       .++++|||++....
T Consensus       114 l~~LH~~~i~H~dlkp~Nill~~~~~~~~~~~~~kl~Dfg~a~~~~  159 (259)
T cd05037         114 LHYLEDKKLVHGNVCGKNILVARYGLNEGYVPFIKLSDPGIPITVL  159 (259)
T ss_pred             HHHHhhCCeecccCccceEEEecCccccCCceeEEeCCCCcccccc
Confidence            4689999999999999999998766       68999999986543

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>KOG0986|consensus

Probab=98.54  E-value=5.3e-08  Score=73.14  Aligned_cols=60  Identities=27%  Similarity=0.342  Sum_probs=46.2

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEEE   63 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~~   63 (93)
                      |.+||..+|++||++|.|||++..+.++|+|+|+|.-.+.....  .++ -++.||++|+.-.
T Consensus       300 LehlH~~~iVYRDLKPeNILLDd~GhvRISDLGLAvei~~g~~~--~~r-vGT~GYMAPEvl~  359 (591)
T KOG0986|consen  300 LEHLHRRRIVYRDLKPENILLDDHGHVRISDLGLAVEIPEGKPI--RGR-VGTVGYMAPEVLQ  359 (591)
T ss_pred             HHHHHhcceeeccCChhheeeccCCCeEeeccceEEecCCCCcc--ccc-cCcccccCHHHHc
Confidence            46799999999999999999999999999999998655433322  222 3567777777543

>KOG4721|consensus

Probab=98.53  E-value=1.9e-08  Score=77.41  Aligned_cols=58  Identities=33%  Similarity=0.398  Sum_probs=44.5

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCC-CCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPL-GEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~-~~~p~e~   61 (93)
                      |.|||.+.||||||++.|||+..+..+||+|||.++.....   ++...+.++. |++|+..
T Consensus       225 M~YLH~hKIIHRDLKSPNiLIs~~d~VKIsDFGTS~e~~~~---STkMSFaGTVaWMAPEvI  283 (904)
T KOG4721|consen  225 MNYLHLHKIIHRDLKSPNILISYDDVVKISDFGTSKELSDK---STKMSFAGTVAWMAPEVI  283 (904)
T ss_pred             hHHHHHhhHhhhccCCCceEeeccceEEeccccchHhhhhh---hhhhhhhhhHhhhCHHHh
Confidence            57999999999999999999999999999999998765433   2333344455 5555544

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=98.53  E-value=7.7e-08  Score=70.66  Aligned_cols=38  Identities=34%  Similarity=0.587  Sum_probs=34.5

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|||..+++|+++++.||+++....++|+|||+++..
T Consensus       252 L~~LH~~~ivHrdlkp~NiLl~~~~~~kL~DfGla~~~  289 (401)
T cd05107         252 MEFLASKNCVHRDLAARNVLICEGKLVKICDFGLARDI  289 (401)
T ss_pred             HHHHhcCCcCcccCCcceEEEeCCCEEEEEecCcceec
Confidence            46899999999999999999998889999999998654

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=98.53  E-value=6.5e-08  Score=65.76  Aligned_cols=60  Identities=25%  Similarity=0.396  Sum_probs=43.0

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||..+++|+++++.||+++.+..++|+|||++......... .......+..|.+|+.
T Consensus       115 l~~lH~~~i~H~dl~~~Nill~~~~~~~l~dfg~~~~~~~~~~~-~~~~~~~~~~y~~Pe~  174 (260)
T cd05069         115 MAYIERMNYIHRDLRAANILVGDNLVCKIADFGLARLIEDNEYT-ARQGAKFPIKWTAPEA  174 (260)
T ss_pred             HHHHHhCCEeecccCcceEEEcCCCeEEECCCccceEccCCccc-ccCCCccchhhCCHHH
Confidence            46899999999999999999999999999999998654322211 1112223455666664

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=98.53  E-value=7.3e-08  Score=65.29  Aligned_cols=38  Identities=32%  Similarity=0.607  Sum_probs=34.4

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|||..+++|+++++.||+++..+.++|+|||+++..
T Consensus       111 l~~lH~~~i~H~dlk~~nili~~~~~~kl~dfg~~~~~  148 (262)
T cd05058         111 MEYLASKKFVHRDLAARNCMLDESFTVKVADFGLARDI  148 (262)
T ss_pred             HHHHHhCCccccccCcceEEEcCCCcEEECCccccccc
Confidence            46899999999999999999999999999999998643

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>KOG0604|consensus

Probab=98.53  E-value=5.3e-08  Score=70.15  Aligned_cols=61  Identities=26%  Similarity=0.311  Sum_probs=44.8

Q ss_pred             CccchhCCccccCCCCCceEEec---CCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEK---NNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEEEK   64 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~---~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~~~   64 (93)
                      +.|||+.+|.|||++|.|+|...   +..+||+|||+|+......   ...+.+.+.||.+|+...-
T Consensus       174 v~~lH~~nIAHRDlKpENLLyt~t~~na~lKLtDfGFAK~t~~~~---~L~TPc~TPyYvaPevlg~  237 (400)
T KOG0604|consen  174 VRYLHSMNIAHRDLKPENLLYTTTSPNAPLKLTDFGFAKETQEPG---DLMTPCFTPYYVAPEVLGP  237 (400)
T ss_pred             HHHHHhcchhhccCChhheeeecCCCCcceEecccccccccCCCc---cccCCcccccccCHHHhCc
Confidence            46899999999999999999964   4568999999997654322   3444565666666665443

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=98.53  E-value=8.1e-08  Score=65.19  Aligned_cols=61  Identities=25%  Similarity=0.377  Sum_probs=43.8

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+.+++|+++++.||+++.++.++++|||++......... .......+..|.+|+..
T Consensus       115 l~~lH~~~i~H~di~p~Nili~~~~~~~l~dfg~~~~~~~~~~~-~~~~~~~~~~y~aPE~~  175 (260)
T cd05070         115 MAYIERMNYIHRDLRSANILVGDGLVCKIADFGLARLIEDNEYT-ARQGAKFPIKWTAPEAA  175 (260)
T ss_pred             HHHHHHCCcccCCCccceEEEeCCceEEeCCceeeeeccCcccc-cccCCCCCccccChHHH
Confidence            46899999999999999999999889999999998654432211 11222335556666643

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>KOG0584|consensus

Probab=98.53  E-value=5e-08  Score=74.85  Aligned_cols=59  Identities=32%  Similarity=0.467  Sum_probs=46.7

Q ss_pred             CccchhC--CccccCCCCCceEEe-cCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHAR--GILHKDLKSKNIFIE-KNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~--~iihrdlk~~nill~-~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||++  .||||||++.||+++ ..+.+||.|+|||..........   ..++|-.+||+...
T Consensus       156 L~yLHs~~PPIIHRDLKCDNIFinG~~G~VKIGDLGLAtl~r~s~aks---vIGTPEFMAPEmYE  217 (632)
T KOG0584|consen  156 LVYLHSQDPPIIHRDLKCDNIFVNGNLGEVKIGDLGLATLLRKSHAKS---VIGTPEFMAPEMYE  217 (632)
T ss_pred             hhhhhcCCCCccccccccceEEEcCCcCceeecchhHHHHhhccccce---eccCccccChHHHh
Confidence            5799987  699999999999997 55789999999998766544332   45677778877665

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=98.53  E-value=7.7e-08  Score=65.39  Aligned_cols=61  Identities=25%  Similarity=0.316  Sum_probs=42.1

Q ss_pred             CccchhCCccccCCCCCceEEecCC-----cEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNN-----KVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~-----~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||..+++|+++++.||+++...     .++++|||++.................+..|++|+.
T Consensus       119 l~~lH~~~i~H~dl~p~nil~~~~~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~  184 (269)
T cd05044         119 CVYLEQMHFIHRDLAARNCLVSEKGYDADRVVKIGDFGLARDIYKSDYYRKEGEGLLPVRWMAPES  184 (269)
T ss_pred             HHHHHhCCcccCCCChheEEEecCCCCCCcceEECCcccccccccccccccCcccCCCccccCHHH
Confidence            4689999999999999999998766     789999999865432222222222223455666653

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>KOG0589|consensus

Probab=98.52  E-value=1.9e-08  Score=74.71  Aligned_cols=59  Identities=34%  Similarity=0.461  Sum_probs=44.6

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      +.|||.+.|+||||++.||+++.+..++|.|||+|+........ ... ..++.+|+.|+-
T Consensus       119 v~ylH~~~iLHRDlK~~Nifltk~~~VkLgDfGlaK~l~~~~~~-a~t-vvGTp~YmcPEi  177 (426)
T KOG0589|consen  119 VNYLHENRVLHRDLKCANIFLTKDKKVKLGDFGLAKILNPEDSL-AST-VVGTPYYMCPEI  177 (426)
T ss_pred             HHHHHhhhhhcccchhhhhhccccCceeecchhhhhhcCCchhh-hhe-ecCCCcccCHHH
Confidence            46899999999999999999999999999999999877644422 223 334445555543

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=98.52  E-value=5.9e-08  Score=65.85  Aligned_cols=39  Identities=31%  Similarity=0.578  Sum_probs=35.0

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|+|.++++|++++|.||++..+..++|+|||++....
T Consensus       108 l~~lH~~~i~H~dlkp~nill~~~~~~kl~Dfg~~~~~~  146 (257)
T cd05116         108 MKYLEETNFVHRDLAARNVLLVTQHYAKISDFGLSKALG  146 (257)
T ss_pred             HHHHHHCCEeecccchhhEEEcCCCeEEECCCccccccC
Confidence            468999999999999999999998899999999987544

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=98.52  E-value=6.7e-08  Score=65.55  Aligned_cols=60  Identities=30%  Similarity=0.501  Sum_probs=42.8

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      +.|||..+++|+++++.||+++.++.++++|||+++....... ........+..|.||+.
T Consensus       113 l~~lH~~~i~H~dl~p~ni~i~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~~~~~y~~Pe~  172 (256)
T cd05059         113 MEYLESNGFIHRDLAARNCLVGEDNVVKVSDFGLARYVLDDQY-TSSQGTKFPVKWAPPEV  172 (256)
T ss_pred             HHHHHHCCcccccccHhhEEECCCCcEEECCcccceecccccc-cccCCCCCCccccCHHH
Confidence            4689999999999999999999999999999999865432221 11122223445666664

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>KOG1095|consensus

Probab=98.52  E-value=4.1e-08  Score=79.08  Aligned_cols=63  Identities=25%  Similarity=0.389  Sum_probs=53.9

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEEE   63 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~~   63 (93)
                      +.||+++++|||||..+|||++....+|++|||+|+-......++.....+-|+-|+|||.-+
T Consensus       815 ~~YLe~~~fvHRDLAaRNCLL~~~r~VKIaDFGlArDiy~~~yyr~~~~a~lPvkWm~PEsl~  877 (1025)
T KOG1095|consen  815 MNYLESKHFVHRDLAARNCLLDERRVVKIADFGLARDIYDKDYYRKHGEAMLPVKWMPPESLK  877 (1025)
T ss_pred             hHHHHhCCCcCcchhhhheeecccCcEEEcccchhHhhhhchheeccCccccceecCCHHHHh
Confidence            469999999999999999999988999999999999655566666666678899999998754

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=98.52  E-value=5.8e-08  Score=65.73  Aligned_cols=59  Identities=25%  Similarity=0.400  Sum_probs=42.8

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      +.|||.++++|+++++.||+++.+..++++|||++.........  ......+..|.||+.
T Consensus       117 l~~lH~~~i~h~dl~~~nilv~~~~~~kl~d~g~~~~~~~~~~~--~~~~~~~~~~~~PE~  175 (261)
T cd05148         117 MAYLEEQNSIHRDLAARNILVGEDLVCKVADFGLARLIKEDVYL--SSDKKIPYKWTAPEA  175 (261)
T ss_pred             HHHHHHCCeeccccCcceEEEcCCceEEEccccchhhcCCcccc--ccCCCCceEecCHHH
Confidence            46899999999999999999999999999999998654322211  112233455666654

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=98.52  E-value=5.3e-08  Score=68.84  Aligned_cols=39  Identities=33%  Similarity=0.710  Sum_probs=35.4

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||..+++|+++++.||+++.++.++|+|||++....
T Consensus       120 L~~LH~~~i~H~dl~p~nill~~~~~~kl~d~g~~~~~~  158 (337)
T cd07852         120 LKYIHSGNVIHRDLKPSNILLNSDCRVKLADFGLARSLS  158 (337)
T ss_pred             HHHHHHCCeecCCCCHHHEEEcCCCcEEEeeccchhccc
Confidence            468999999999999999999999999999999987554

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=98.51  E-value=6.5e-08  Score=66.97  Aligned_cols=38  Identities=29%  Similarity=0.477  Sum_probs=34.3

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|||..+++|+++++.||+++....++++|||++...
T Consensus       115 l~~lH~~~iiH~dikp~Nili~~~~~~kl~Dfg~~~~~  152 (285)
T cd05632         115 LEDLHRENTVYRDLKPENILLDDYGHIRISDLGLAVKI  152 (285)
T ss_pred             HHHHHhCCeeecCCCHHHEEECCCCCEEEecCCcceec
Confidence            46899999999999999999998889999999988643

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=98.51  E-value=1e-07  Score=64.23  Aligned_cols=60  Identities=25%  Similarity=0.355  Sum_probs=42.6

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      +.++|..+++|+++++.||+++....++|+|||++........  ......+...|+|||..
T Consensus       115 l~~lH~~~i~H~di~p~nil~~~~~~~~l~df~~~~~~~~~~~--~~~~~~~~~~y~aPE~~  174 (257)
T cd08223         115 LQYLHEKHILHRDLKTQNVFLTRTNIIKVGDLGIARVLENQCD--MASTLIGTPYYMSPELF  174 (257)
T ss_pred             HHHHHhCCeeccCCCchhEEEecCCcEEEecccceEEecccCC--ccccccCCcCccChhHh
Confidence            3689999999999999999999999999999999865432211  11222334455666543

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>KOG0586|consensus

Probab=98.50  E-value=4.7e-08  Score=74.73  Aligned_cols=58  Identities=28%  Similarity=0.432  Sum_probs=44.2

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      +.|||++.++||+|+..|++++.+..++|+|||++.++....   ..+.+++..-|++|+-
T Consensus       168 veYcH~k~ivHrdLk~eNilL~~~mnikIaDfgfS~~~~~~~---~lqt~cgsppyAaPEl  225 (596)
T KOG0586|consen  168 VEYCHSKNIVHRDLKAENILLDENMNIKIADFGFSTFFDYGL---MLQTFCGSPPYAAPEL  225 (596)
T ss_pred             HHHHhhcceeccccchhhcccccccceeeeccccceeecccc---cccccCCCCCccChHh
Confidence            469999999999999999999999999999999998776333   2333444444444443

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=98.50  E-value=9.8e-08  Score=64.25  Aligned_cols=60  Identities=27%  Similarity=0.410  Sum_probs=42.6

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|+|.++++|+++++.||+++.++.++++|||++........ ........+..|.+|+.
T Consensus       106 l~~lH~~~~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~-~~~~~~~~~~~y~aPE~  165 (250)
T cd05085         106 MAYLESKNCIHRDLAARNCLVGENNVLKISDFGMSRQEDDGIY-SSSGLKQIPIKWTAPEA  165 (250)
T ss_pred             HHHHHhCCeeecccChheEEEcCCCeEEECCCccceecccccc-ccCCCCCCcccccCHHH
Confidence            4689999999999999999999999999999999865332221 11122233455666664

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>KOG0580|consensus

Probab=98.50  E-value=3.2e-08  Score=69.06  Aligned_cols=57  Identities=21%  Similarity=0.375  Sum_probs=46.2

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      +.|||..+||||+++|.|++++..+.++++|||.+-..+    .....+.++++-|.|||-
T Consensus       137 l~y~h~k~VIhRdiKpenlLlg~~~~lkiAdfGwsV~~p----~~kR~tlcgt~dyl~pEm  193 (281)
T KOG0580|consen  137 LLYCHLKRVIHRDIKPENLLLGSAGELKIADFGWSVHAP----SNKRKTLCGTLDYLPPEM  193 (281)
T ss_pred             HHHhccCCcccCCCCHHHhccCCCCCeeccCCCceeecC----CCCceeeecccccCCHhh
Confidence            358999999999999999999999999999999876544    334555677887776653

>KOG0032|consensus

Probab=98.50  E-value=4.6e-08  Score=71.92  Aligned_cols=57  Identities=30%  Similarity=0.549  Sum_probs=41.0

Q ss_pred             CccchhCCccccCCCCCceEEecC----CcEEEeeccccccccccCCCCCCCCCCCCCCCChh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKN----NKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKE   59 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~----~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~   59 (93)
                      +.|||+.+++|+|++|.|+++...    ..++++|||+|.+...  ........++|.+.+|+
T Consensus       148 v~~lH~~gvvHrDlKpEN~L~~~~~~~~~~ik~~DFGla~~~~~--~~~~~~~~Gtp~y~APE  208 (382)
T KOG0032|consen  148 VKYLHSLGVVHRDLKPENLLLASKDEGSGRIKLIDFGLAKFIKP--GERLHTIVGTPEYVAPE  208 (382)
T ss_pred             HHHHHhCCceeccCCHHHeeeccccCCCCcEEEeeCCCceEccC--CceEeeecCCccccCch
Confidence            468999999999999999999643    3699999999987765  22223333444444444

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=98.50  E-value=7.1e-08  Score=66.15  Aligned_cols=38  Identities=37%  Similarity=0.749  Sum_probs=34.6

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|||..+++|+++++.||+++..+.++|+|||++...
T Consensus       112 l~~LH~~~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~  149 (284)
T cd07839         112 LAFCHSHNVLHRDLKPQNLLINKNGELKLADFGLARAF  149 (284)
T ss_pred             HHHHHHCCEecCCCCHHHEEEcCCCcEEECccchhhcc
Confidence            46899999999999999999999999999999998654

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=98.50  E-value=6.9e-08  Score=66.82  Aligned_cols=38  Identities=32%  Similarity=0.500  Sum_probs=34.6

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|||+.+++|++|++.||+++..+.++++|||++...
T Consensus       115 l~~lH~~~ivH~dlkp~Nil~~~~~~~~l~Dfg~~~~~  152 (285)
T cd05605         115 LEDLHRERIVYRDLKPENILLDDYGHIRISDLGLAVEI  152 (285)
T ss_pred             HHHHHHCCcEecCCCHHHEEECCCCCEEEeeCCCceec
Confidence            46899999999999999999998899999999998654

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=98.50  E-value=8.9e-08  Score=66.07  Aligned_cols=38  Identities=37%  Similarity=0.718  Sum_probs=34.5

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|||..+++|++|++.||+++.++.++|+|||+++..
T Consensus       116 L~~lH~~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~  153 (291)
T cd07870         116 LAYIHGQHILHRDLKPQNLLISYLGELKLADFGLARAK  153 (291)
T ss_pred             HHHHHhCCcccCCCChHHEEEcCCCcEEEecccccccc
Confidence            46899999999999999999999999999999988653

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=98.49  E-value=6.9e-08  Score=66.89  Aligned_cols=38  Identities=32%  Similarity=0.566  Sum_probs=34.4

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|||..+++|+++++.||+++.++.++++|||++...
T Consensus       115 l~~lH~~~iiH~dikp~Nil~~~~~~~~l~Dfg~~~~~  152 (285)
T cd05630         115 LEDLHQERIVYRDLKPENILLDDHGHIRISDLGLAVHV  152 (285)
T ss_pred             HHHHHhCCEEeCCCCHHHEEECCCCCEEEeeccceeec
Confidence            46899999999999999999998899999999998654

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=98.49  E-value=6.9e-08  Score=65.73  Aligned_cols=59  Identities=20%  Similarity=0.271  Sum_probs=43.0

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||+.+++|+++++.||+++.+..++++|||++.......  .......+...|.||+.
T Consensus       124 l~~LH~~~ivh~dl~~~nili~~~~~~~l~Dfg~~~~~~~~~--~~~~~~~g~~~y~aPE~  182 (272)
T cd06637         124 LSHLHQHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTV--GRRNTFIGTPYWMAPEV  182 (272)
T ss_pred             HHHHHHCCCccCCCCHHHEEECCCCCEEEccCCCceeccccc--ccCCcccccccccCHhH
Confidence            468999999999999999999999999999999986543221  11222334455666664

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=98.49  E-value=7.3e-08  Score=66.17  Aligned_cols=62  Identities=19%  Similarity=0.280  Sum_probs=41.3

Q ss_pred             CccchhCCccccCCCCCceEEecCC---cEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNN---KVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~---~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||.++++|++|++.||++...+   .++|+|||+++................+..|++|+.-
T Consensus       129 l~~LH~~~ivH~dlkp~nil~~~~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  193 (277)
T cd05036         129 CKYLEENHFIHRDIAARNCLLTCKGPGRVAKIADFGMARDIYRASYYRKGGRAMLPIKWMPPEAF  193 (277)
T ss_pred             HHHHHHCCEeecccchheEEEeccCCCcceEeccCccccccCCccceecCCCCCccHhhCCHHHH
Confidence            4689999999999999999997543   5899999998754322211112122224456666643

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=98.49  E-value=7.9e-08  Score=65.19  Aligned_cols=60  Identities=23%  Similarity=0.410  Sum_probs=43.3

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||..+++|++++|.||+++..+.+++.|||++......... .......+..|.||+.
T Consensus       116 l~~LH~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~~-~~~~~~~~~~y~aPE~  175 (261)
T cd05072         116 MAYIERKNYIHRDLRAANVLVSESLMCKIADFGLARVIEDNEYT-AREGAKFPIKWTAPEA  175 (261)
T ss_pred             HHHHHHCCeeccccchhhEEecCCCcEEECCCccceecCCCcee-ccCCCccceecCCHHH
Confidence            46899999999999999999999999999999998754322211 1122223455666654

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=98.49  E-value=6.8e-08  Score=66.17  Aligned_cols=38  Identities=34%  Similarity=0.682  Sum_probs=34.7

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|||..+++|+++++.||+++.++.++|+|||++...
T Consensus       114 L~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~  151 (285)
T cd07861         114 ILFCHSRRVLHRDLKPQNLLIDNKGVIKLADFGLARAF  151 (285)
T ss_pred             HHHHHhCCeeecCCCHHHEEEcCCCcEEECcccceeec
Confidence            46899999999999999999999999999999998654

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=98.49  E-value=6.9e-08  Score=68.83  Aligned_cols=39  Identities=38%  Similarity=0.666  Sum_probs=35.1

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||..+++|++|+|.||+++.++.++|+|||++....
T Consensus       131 L~~LH~~gi~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~  169 (353)
T cd07850         131 IKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAG  169 (353)
T ss_pred             HHHHHhCCeeeCCCCHHHEEECCCCCEEEccCccceeCC
Confidence            468999999999999999999999999999999986543

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=98.49  E-value=1.1e-07  Score=66.14  Aligned_cols=37  Identities=35%  Similarity=0.635  Sum_probs=33.7

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNF   37 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~   37 (93)
                      |.|||.++++|++|+|.||+++.+..++|+|||++..
T Consensus       132 l~~lH~~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~  168 (297)
T cd05089         132 MQYLSEKQFIHRDLAARNVLVGENLASKIADFGLSRG  168 (297)
T ss_pred             HHHHHHCCcccCcCCcceEEECCCCeEEECCcCCCcc
Confidence            4689999999999999999999888999999999753

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>KOG0605|consensus

Probab=98.49  E-value=4.5e-08  Score=74.05  Aligned_cols=36  Identities=31%  Similarity=0.648  Sum_probs=33.2

Q ss_pred             ccchhCCccccCCCCCceEEecCCcEEEeecccccc
Q psy700            2 GYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNF   37 (93)
Q Consensus         2 ~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~   37 (93)
                      ..||..|+|||||+|.|+|++..+.+||.||||+..
T Consensus       255 ~~iH~~gyIHRDIKPdNlLiD~~GHiKLSDFGLs~g  290 (550)
T KOG0605|consen  255 ESIHQLGYIHRDIKPDNLLIDAKGHIKLSDFGLSTG  290 (550)
T ss_pred             HHHHHcCcccccCChhheeecCCCCEeeccccccch
Confidence            458999999999999999999999999999999843

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=98.48  E-value=7.5e-08  Score=65.84  Aligned_cols=38  Identities=24%  Similarity=0.439  Sum_probs=34.1

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|||.++++|++++|.||+++.+..++++|||++...
T Consensus       120 l~~lH~~~iiH~dikp~nili~~~~~~~l~dfg~~~~~  157 (266)
T cd05064         120 MKYLSEMGYVHKGLAAHKVLVNSDLVCKISGFRRLQED  157 (266)
T ss_pred             HHHHHHCCEeeccccHhhEEEcCCCcEEECCCcccccc
Confidence            46899999999999999999999999999999986543

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=98.48  E-value=8e-08  Score=67.90  Aligned_cols=39  Identities=33%  Similarity=0.650  Sum_probs=35.1

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||..+++|++++|.||+++.++.++|+|||++....
T Consensus       118 L~~LH~~givH~dlkp~Nili~~~~~~kl~Dfg~a~~~~  156 (332)
T cd07857         118 LKYIHSANVLHRDLKPGNLLVNADCELKICDFGLARGFS  156 (332)
T ss_pred             HHHHHhCCcccCCCCHHHeEEcCCCCEEeCcCCCceecc
Confidence            468999999999999999999999999999999987543

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=98.48  E-value=1.2e-07  Score=76.16  Aligned_cols=38  Identities=42%  Similarity=0.787  Sum_probs=34.9

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|||+++++|+||+|.||+++..+.++++|||++...
T Consensus       126 L~yLHs~GIIHRDLKPeNILLd~dg~vKLiDFGLAk~i  163 (932)
T PRK13184        126 IEYVHSKGVLHRDLKPDNILLGLFGEVVILDWGAAIFK  163 (932)
T ss_pred             HHHHHHCCccccCCchheEEEcCCCCEEEEecCcceec
Confidence            46899999999999999999999999999999998765

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=98.48  E-value=8e-08  Score=66.43  Aligned_cols=61  Identities=30%  Similarity=0.398  Sum_probs=43.4

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCC--CCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYT--SNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~--~~~~~~~~~~~~p~e~   61 (93)
                      |.|||.++++|+++++.||+++..+.++|+|||++..........  .......+..|+|||.
T Consensus       132 l~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~  194 (310)
T cd07865         132 LYYIHRNKILHRDMKAANILITKDGILKLADFGLARAFSLSKNSKPNRYTNRVVTLWYRPPEL  194 (310)
T ss_pred             HHHHHHCCeeccCCCHHHEEECCCCcEEECcCCCcccccCCcccCCCCccCcccCccccCcHH
Confidence            468999999999999999999999999999999986543222111  1112223455666664

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>PTZ00284 protein kinase; Provisional

Probab=98.48  E-value=8.2e-08  Score=71.20  Aligned_cols=56  Identities=27%  Similarity=0.364  Sum_probs=38.6

Q ss_pred             Cccchh-CCccccCCCCCceEEecCC----------------cEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHA-RGILHKDLKSKNIFIEKNN----------------KVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs-~~iihrdlk~~nill~~~~----------------~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||. .+|+|+||+|.||++...+                .++|+|||++......     .....++.+|++||.
T Consensus       244 L~yLH~~~gIiHrDlKP~NILl~~~~~~~~~~~~~~~~~~~~~vkl~DfG~~~~~~~~-----~~~~~gt~~Y~APE~  316 (467)
T PTZ00284        244 LDYFHTELHLMHTDLKPENILMETSDTVVDPVTNRALPPDPCRVRICDLGGCCDERHS-----RTAIVSTRHYRSPEV  316 (467)
T ss_pred             HHHHHhcCCeecCCCCHHHEEEecCCcccccccccccCCCCceEEECCCCccccCccc-----cccccCCccccCcHH
Confidence            468998 5999999999999997544                4899999987532211     112234555666654

>KOG4257|consensus

Probab=98.48  E-value=3.6e-08  Score=76.52  Aligned_cols=60  Identities=23%  Similarity=0.470  Sum_probs=49.7

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||+.+++||||-.+||++.....+||+|||++++......+... ....|+-|++|++
T Consensus       504 laYLeSkrfVHRDIAaRNiLVsSp~CVKLaDFGLSR~~ed~~yYkaS-~~kLPIKWmaPES  563 (974)
T KOG4257|consen  504 LAYLESKRFVHRDIAARNILVSSPQCVKLADFGLSRYLEDDAYYKAS-RGKLPIKWMAPES  563 (974)
T ss_pred             HHHHHhhchhhhhhhhhheeecCcceeeecccchhhhccccchhhcc-ccccceeecCccc
Confidence            47999999999999999999999999999999999988766655544 5566886666653

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=98.48  E-value=1.1e-07  Score=64.39  Aligned_cols=39  Identities=28%  Similarity=0.629  Sum_probs=35.2

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||..+++|++|++.||+++.++.++|+|||++....
T Consensus       108 l~~lh~~~i~H~di~p~nili~~~~~~kl~df~~~~~~~  146 (257)
T cd05060         108 MAYLESKHFVHRDLAARNVLLVNRHQAKISDFGMSRALG  146 (257)
T ss_pred             HHHHhhcCeeccCcccceEEEcCCCcEEeccccccceee
Confidence            468999999999999999999999999999999987554

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=98.48  E-value=1.1e-07  Score=64.46  Aligned_cols=60  Identities=23%  Similarity=0.392  Sum_probs=42.5

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||..+++|+++++.||+++.+..++++|||+++........ .......+..|.+|+.
T Consensus       113 l~~lH~~~i~H~dl~p~ni~i~~~~~~kl~d~g~~~~~~~~~~~-~~~~~~~~~~y~aPE~  172 (256)
T cd05114         113 MEYLERNSFIHRDLAARNCLVSSTGVVKVSDFGMTRYVLDDEYT-SSSGAKFPVKWSPPEV  172 (256)
T ss_pred             HHHHHHCCccccccCcceEEEcCCCeEEECCCCCccccCCCcee-ccCCCCCchhhCChhh
Confidence            46899999999999999999998899999999988654322211 1112223455666654

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=98.48  E-value=1e-07  Score=64.51  Aligned_cols=56  Identities=23%  Similarity=0.430  Sum_probs=42.1

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      +.|||.++++|++|++.||+++.++.++++|||++........     ....+..|++|+.
T Consensus       115 l~~lh~~~i~H~di~p~Nili~~~~~~~l~d~g~~~~~~~~~~-----~~~~~~~~~ape~  170 (256)
T cd05039         115 MEYLEEKNFVHRDLAARNVLVSEDLVAKVSDFGLAKEASQGQD-----SGKLPVKWTAPEA  170 (256)
T ss_pred             HHHHHhCCccchhcccceEEEeCCCCEEEcccccccccccccc-----cCCCcccccCchh
Confidence            4689999999999999999999999999999999865532211     2233455666664

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=98.48  E-value=8.5e-08  Score=66.13  Aligned_cols=39  Identities=41%  Similarity=0.662  Sum_probs=35.0

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||..+++|++|++.||+++.++.++|+|||++....
T Consensus       118 l~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~  156 (290)
T cd05613         118 LEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFH  156 (290)
T ss_pred             HHHHHhCCeeccCCCHHHeEECCCCCEEEeeCccceecc
Confidence            468999999999999999999999999999999986543

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=98.48  E-value=8.1e-08  Score=67.98  Aligned_cols=39  Identities=36%  Similarity=0.759  Sum_probs=35.1

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||+.+++|++|++.||+++..+.++++|||++....
T Consensus       119 L~~LH~~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~  157 (336)
T cd07849         119 LKYIHSANVLHRDLKPSNLLLNTNCDLKICDFGLARIAD  157 (336)
T ss_pred             HHHHHhCCeeccCCCHHHEEECCCCCEEECcccceeecc
Confidence            468999999999999999999999999999999986543

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=98.48  E-value=7.2e-08  Score=67.02  Aligned_cols=38  Identities=37%  Similarity=0.757  Sum_probs=34.6

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|||+.+++|++|++.||+++.++.++++|||++...
T Consensus       117 L~~lH~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~  154 (301)
T cd07873         117 LNYCHRRKVLHRDLKPQNLLINERGELKLADFGLARAK  154 (301)
T ss_pred             HHHHHhCCeeCCCCCHHHEEECCCCcEEECcCcchhcc
Confidence            46899999999999999999999999999999998654

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=98.47  E-value=8.6e-08  Score=66.95  Aligned_cols=37  Identities=38%  Similarity=0.664  Sum_probs=33.8

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNF   37 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~   37 (93)
                      |.|||+++++|++|+|.||+++....++|+|||++..
T Consensus       137 l~~LH~~gi~H~dlkp~Nili~~~~~~kl~dfg~~~~  173 (303)
T cd05088         137 MDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSRG  173 (303)
T ss_pred             HHHHHhCCccccccchheEEecCCCcEEeCccccCcc
Confidence            4689999999999999999999989999999999753

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=98.47  E-value=9.2e-08  Score=66.09  Aligned_cols=38  Identities=32%  Similarity=0.497  Sum_probs=34.3

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|||+.+++|+++++.||+++.++.++++|||++...
T Consensus       110 l~~lH~~~ivH~dikp~Nil~~~~~~~~l~dfg~~~~~  147 (279)
T cd05633         110 LEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDF  147 (279)
T ss_pred             HHHHHHCCcCCCCCCHHHEEECCCCCEEEccCCcceec
Confidence            46899999999999999999998899999999997543

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=98.47  E-value=1.3e-07  Score=64.99  Aligned_cols=38  Identities=34%  Similarity=0.691  Sum_probs=34.5

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|||+.+++|++|++.||+++.++.++++|||++...
T Consensus       116 L~~LH~~~i~H~dlkp~nili~~~~~~kl~dfg~~~~~  153 (282)
T cd06643         116 LNYLHENKIIHRDLKAGNILFTLDGDIKLADFGVSAKN  153 (282)
T ss_pred             HHHHHHCCeeecCCCcccEEEccCCCEEEccccccccc
Confidence            46899999999999999999999999999999997654

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=98.47  E-value=9.4e-08  Score=65.40  Aligned_cols=36  Identities=39%  Similarity=0.731  Sum_probs=33.4

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFN   36 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~   36 (93)
                      |.|||+.+++|++++|.||+++.+..++++|||++.
T Consensus       125 l~~lH~~~i~H~dikp~nili~~~~~~kl~dfgl~~  160 (270)
T cd05047         125 MDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSR  160 (270)
T ss_pred             HHHHHHCCEeecccccceEEEcCCCeEEECCCCCcc
Confidence            468999999999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=98.47  E-value=1.2e-07  Score=64.64  Aligned_cols=60  Identities=23%  Similarity=0.474  Sum_probs=42.8

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|+|..+++|+++++.||+++..+.+++.|||++............ ....+..|.+|+.
T Consensus       120 l~~lH~~~~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~-~~~~~~~y~aPE~  179 (270)
T cd05056         120 LAYLESKRFVHRDIAARNVLVSSPDCVKLGDFGLSRYLEDESYYKAS-KGKLPIKWMAPES  179 (270)
T ss_pred             HHHHHhCCeeccccChheEEEecCCCeEEccCceeeecccccceecC-CCCccccccChhh
Confidence            46899999999999999999999899999999998654433222111 2223445555553

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>KOG1027|consensus

Probab=98.47  E-value=1.3e-07  Score=74.67  Aligned_cols=63  Identities=30%  Similarity=0.331  Sum_probs=47.3

Q ss_pred             CccchhCCccccCCCCCceEEec---C--CcEEEeeccccccccccCCC-CCCCCCCCCCCCChhhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEK---N--NKVVITDFGLFNFSKLYNSY-TSNEKPSSPLGEGKEEEEE   63 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~---~--~~~kl~dfgla~~~~~~~~~-~~~~~~~~~~~~~p~e~~~   63 (93)
                      |++||+.+++||||+|.||++..   .  .+++|+|||+++........ +...+..++-||.+||.-.
T Consensus       619 laHLHsl~iVHRDLkPQNILI~~~~~~~~~ra~iSDfglsKkl~~~~sS~~r~s~~sGt~GW~APE~L~  687 (903)
T KOG1027|consen  619 LAHLHSLKIVHRDLKPQNILISVPSADGTLRAKISDFGLSKKLAGGKSSFSRLSGGSGTSGWQAPEQLR  687 (903)
T ss_pred             HHHHHhcccccccCCCceEEEEccCCCcceeEEecccccccccCCCcchhhcccCCCCcccccCHHHHh
Confidence            46899999999999999999975   2  46789999999766544433 3345556677777776653

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=98.46  E-value=1e-07  Score=64.84  Aligned_cols=59  Identities=25%  Similarity=0.371  Sum_probs=42.6

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||..+++|+++++.||+++.++.++++|||++........  ......++..|.||+.
T Consensus       119 l~~lH~~~i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~y~~PE~  177 (267)
T cd06646         119 LAYLHSKGKMHRDIKGANILLTDNGDVKLADFGVAAKITATIA--KRKSFIGTPYWMAPEV  177 (267)
T ss_pred             HHHHHHCCccccCCCHHHEEECCCCCEEECcCccceeeccccc--ccCccccCccccCHhH
Confidence            4689999999999999999999888999999999865432211  1122234455666664

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=98.45  E-value=1.1e-07  Score=65.79  Aligned_cols=56  Identities=27%  Similarity=0.351  Sum_probs=41.9

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||..+++|++|++.||++..++.++|+|||++......     .....++.+|.+|+.
T Consensus       114 l~~lH~~~i~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~-----~~~~~~~~~y~aPE~  169 (290)
T cd05580         114 LEYLHSLDIVYRDLKPENLLLDSDGYIKITDFGFAKRVKGR-----TYTLCGTPEYLAPEI  169 (290)
T ss_pred             HHHHHHCCEecCCCCHHHEEECCCCCEEEeeCCCccccCCC-----CCCCCCCccccChhh
Confidence            46899999999999999999999999999999997654322     112233455555554

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=98.45  E-value=1.5e-07  Score=64.18  Aligned_cols=61  Identities=30%  Similarity=0.448  Sum_probs=42.9

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||+.+++|+++++.||++..++.++++|||++................++..|.+|+.
T Consensus       121 l~~lH~~~i~H~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~  181 (272)
T cd06629         121 LAYLHSKGILHRDLKADNLLVDADGICKISDFGISKKSDDIYDNDQNMSMQGSVFWMAPEV  181 (272)
T ss_pred             HHHHhhCCeeecCCChhhEEEcCCCeEEEeeccccccccccccccccccccCCccccCHHH
Confidence            4689999999999999999999999999999999865432211111222334555666654

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=98.45  E-value=9.1e-08  Score=65.84  Aligned_cols=38  Identities=32%  Similarity=0.607  Sum_probs=34.6

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|||+.+++|++|++.||+++.++.++|+|||++...
T Consensus       108 l~~lH~~~i~H~dlkp~Nill~~~~~~~l~dfg~~~~~  145 (279)
T cd06619         108 LTYLWSLKILHRDVKPSNMLVNTRGQVKLCDFGVSTQL  145 (279)
T ss_pred             HHHHHHCCEeeCCCCHHHEEECCCCCEEEeeCCcceec
Confidence            46899999999999999999999999999999998643

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=98.45  E-value=1.5e-07  Score=63.27  Aligned_cols=59  Identities=25%  Similarity=0.371  Sum_probs=42.5

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||..+++|+++++.||+++....++++|||++.........  .....++.+|.||+.
T Consensus       114 l~~lH~~~i~h~dl~~~nili~~~~~~~l~df~~~~~~~~~~~~--~~~~~~~~~y~aPE~  172 (256)
T cd08529         114 LAHLHSKKILHRDIKSLNLFLDAYDNVKIGDLGVAKLLSDNTNF--ANTIVGTPYYLSPEL  172 (256)
T ss_pred             HHHHHHCCcccCCCCcceEEEeCCCCEEEcccccceeccCccch--hhccccCccccCHHH
Confidence            46899999999999999999999899999999987654432221  112233445556653

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=98.45  E-value=1e-07  Score=65.71  Aligned_cols=58  Identities=24%  Similarity=0.282  Sum_probs=42.0

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+.+++|+++++.||+++.++.++++|||++.......    .....++..|++|+.-
T Consensus       110 l~~lH~~~i~H~di~p~nili~~~~~~kl~dfg~~~~~~~~~----~~~~~~~~~y~aPE~~  167 (278)
T cd05606         110 LEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKK----PHASVGTHGYMAPEVL  167 (278)
T ss_pred             HHHHHHCCEEcCCCCHHHEEECCCCCEEEccCcCccccCccC----CcCcCCCcCCcCcHHh
Confidence            468999999999999999999988999999999876432111    1112344556666543

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=98.45  E-value=1.1e-07  Score=64.64  Aligned_cols=62  Identities=24%  Similarity=0.247  Sum_probs=43.4

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCC-CCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSY-TSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~-~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+.+++|+++++.||+++.++.++|+|||++......... .......++..|.+|+..
T Consensus       119 l~~lH~~~i~H~dl~p~nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  181 (265)
T cd06652         119 VSYLHSNMIVHRDIKGANILRDSVGNVKLGDFGASKRLQTICLSGTGMKSVTGTPYWMSPEVI  181 (265)
T ss_pred             HHHHHhCCEecCCCCHHHEEecCCCCEEECcCccccccccccccccccccCCCCccccChhhh
Confidence            46899999999999999999999999999999988654321111 111122344566666654

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=98.45  E-value=1.3e-07  Score=64.06  Aligned_cols=38  Identities=32%  Similarity=0.726  Sum_probs=34.3

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      +.|+|..+++|+++++.||+++.++.++|+|||++...
T Consensus       113 l~~lH~~~~~H~dl~p~nili~~~~~~kl~Dfg~~~~~  150 (254)
T cd05083         113 MEYLESKKLVHRDLAARNILVSEDGVAKVSDFGLARVG  150 (254)
T ss_pred             HHHHHhCCeeccccCcceEEEcCCCcEEECCCccceec
Confidence            46899999999999999999998899999999987653

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=98.45  E-value=1e-07  Score=64.80  Aligned_cols=39  Identities=36%  Similarity=0.707  Sum_probs=34.8

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      +.|||..+++|+++++.||++...+.++++|||++....
T Consensus       119 l~~lH~~~i~H~dlkp~nili~~~~~~~l~dfg~~~~~~  157 (267)
T cd06645         119 LYYLHSKGKMHRDIKGANILLTDNGHVKLADFGVSAQIT  157 (267)
T ss_pred             HHHHHHCCeecCCCCHHHEEECCCCCEEECcceeeeEcc
Confidence            468999999999999999999988999999999976543

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=98.45  E-value=1.1e-07  Score=67.20  Aligned_cols=61  Identities=20%  Similarity=0.291  Sum_probs=43.7

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCC--CCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYT--SNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~--~~~~~~~~~~~~p~e~   61 (93)
                      |.|||..+++|+++++.||+++.++.++|+|||++..........  ......++.+|.||+.
T Consensus       120 L~~LH~~~ivH~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~  182 (334)
T cd07855         120 LKYIHSANVIHRDLKPSNLLVNEDCELRIGDFGMARGLSSSPTEHKYFMTEYVATRWYRAPEL  182 (334)
T ss_pred             HHHHHHCCeecCCCCHHHEEEcCCCcEEecccccceeecccCcCCCcccccccccccccChHH
Confidence            468999999999999999999999999999999986543322111  1112234555666664

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=98.44  E-value=1.5e-07  Score=64.27  Aligned_cols=39  Identities=38%  Similarity=0.704  Sum_probs=35.4

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||..+++|+++++.||+++.+..++++|||++....
T Consensus       122 L~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~  160 (284)
T cd05038         122 MDYLGSQRYIHRDLAARNILVESEDLVKISDFGLAKVLP  160 (284)
T ss_pred             HHHHHhCCeecCCCCHHhEEEcCCCCEEEcccccccccc
Confidence            468999999999999999999999999999999987654

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=98.44  E-value=1.5e-07  Score=63.48  Aligned_cols=61  Identities=30%  Similarity=0.497  Sum_probs=43.3

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      +.|||..+++|+++++.||+++.+..++++|||++....... .........+.+|.+|+..
T Consensus       113 l~~lH~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~-~~~~~~~~~~~~~~aPe~~  173 (256)
T cd05112         113 MAYLESSNVIHRDLAARNCLVGENQVVKVSDFGMTRFVLDDQ-YTSSTGTKFPVKWSSPEVF  173 (256)
T ss_pred             HHHHHHCCccccccccceEEEcCCCeEEECCCcceeecccCc-ccccCCCccchhhcCHhHh
Confidence            368999999999999999999988899999999876443221 1112222334566666643

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>PLN00181 protein SPA1-RELATED; Provisional

Probab=98.44  E-value=8.9e-08  Score=75.31  Aligned_cols=25  Identities=16%  Similarity=0.377  Sum_probs=21.7

Q ss_pred             CccchhCCccccCCCCCceEEecCC
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNN   25 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~   25 (93)
                      |.|||+++|+||||+|.|||+...+
T Consensus        93 l~~lH~~gIvHrDlKP~NiLl~~~~  117 (793)
T PLN00181         93 VNAAHSQGIVVHNVRPSCFVMSSFN  117 (793)
T ss_pred             HHHHHhCCeeeccCCchhEEEcccC
Confidence            4699999999999999999996433

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=98.43  E-value=1.1e-07  Score=65.50  Aligned_cols=38  Identities=37%  Similarity=0.756  Sum_probs=34.6

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|||..+++|++|++.||+++.++.++|+|||+++..
T Consensus       116 l~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~  153 (291)
T cd07844         116 LAYCHQRRVLHRDLKPQNLLISERGELKLADFGLARAK  153 (291)
T ss_pred             HHHHHhCCeecccCCHHHEEEcCCCCEEECcccccccc
Confidence            46899999999999999999999999999999997654

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=98.43  E-value=1.5e-07  Score=64.02  Aligned_cols=61  Identities=25%  Similarity=0.396  Sum_probs=43.7

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||..+++|+++++.||+++.++.++++|||+++........ .......+..|.+|+.-
T Consensus       113 l~~lH~~~i~H~dl~p~nili~~~~~~kl~d~g~~~~~~~~~~~-~~~~~~~~~~y~~pe~~  173 (256)
T cd05113         113 MAYLESKQFIHRDLAARNCLVDDQGCVKVSDFGLSRYVLDDEYT-SSVGSKFPVRWSPPEVL  173 (256)
T ss_pred             HHHHHhCCeeccccCcceEEEcCCCCEEECCCccceecCCCcee-ecCCCccChhhCCHHHH
Confidence            46899999999999999999998899999999987654322211 11122334566666654

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>KOG1152|consensus

Probab=98.43  E-value=1.7e-07  Score=72.12  Aligned_cols=59  Identities=25%  Similarity=0.418  Sum_probs=47.7

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEEE   63 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~~   63 (93)
                      +.+||+++|+||+++-.|+.+..++.++|+|||.|....    ..+...+.++++|++|+-..
T Consensus       683 i~hlh~~~ivhrdikdenvivd~~g~~klidfgsaa~~k----sgpfd~f~gtv~~aapevl~  741 (772)
T KOG1152|consen  683 IKHLHDQGIVHRDIKDENVIVDSNGFVKLIDFGSAAYTK----SGPFDVFVGTVDYAAPEVLG  741 (772)
T ss_pred             cccccccCceecccccccEEEecCCeEEEeeccchhhhc----CCCcceeeeeccccchhhhC
Confidence            468999999999999999999999999999999875332    33455566788888887643

>KOG0665|consensus

Probab=98.43  E-value=9.7e-08  Score=68.92  Aligned_cols=41  Identities=37%  Similarity=0.604  Sum_probs=36.4

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLY   41 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~   41 (93)
                      +.|+|+.+|+||||+|.||++.....+|+.|||+|+.....
T Consensus       131 ik~lhs~~IihRdLkPsnivv~~~~~lKi~dfg~ar~e~~~  171 (369)
T KOG0665|consen  131 IKHLHSAGIIHRDLKPSNIVVNSDCTLKILDFGLARTEDTD  171 (369)
T ss_pred             HHHHHhcceeecccCcccceecchhheeeccchhhcccCcc
Confidence            36899999999999999999999999999999998765433

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=98.42  E-value=1.5e-07  Score=64.09  Aligned_cols=39  Identities=33%  Similarity=0.623  Sum_probs=34.9

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      +.|||..+++|+++++.||+++.+..++++|||++....
T Consensus       120 l~~lH~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~  158 (268)
T cd05063         120 MKYLSDMNYVHRDLAARNILVNSNLECKVSDFGLSRVLE  158 (268)
T ss_pred             HHHHHHCCeeccccchhhEEEcCCCcEEECCCccceecc
Confidence            468999999999999999999998999999999986543

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=98.42  E-value=1.9e-07  Score=66.08  Aligned_cols=38  Identities=29%  Similarity=0.663  Sum_probs=33.5

Q ss_pred             CccchhC-CccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHAR-GILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~-~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|||+. +++|++|++.||+++.++.++|+|||++...
T Consensus       116 l~~lH~~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~  154 (331)
T cd06649         116 LAYLREKHQIMHRDVKPSNILVNSRGEIKLCDFGVSGQL  154 (331)
T ss_pred             HHHHhhcCCEEcCCCChhhEEEcCCCcEEEccCcccccc
Confidence            4689986 6999999999999999999999999998654

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=98.42  E-value=1.4e-07  Score=62.58  Aligned_cols=38  Identities=29%  Similarity=0.308  Sum_probs=33.3

Q ss_pred             Cccchh-CCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHA-RGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs-~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      +.++|. .+++|+|++|.||+++ ++.++++|||++....
T Consensus       130 l~~lH~~~givHrDlkP~NIll~-~~~~~liDFG~a~~~~  168 (190)
T cd05145         130 MRRLYQEAGLVHGDLSEYNILYH-DGKPYIIDVSQAVELD  168 (190)
T ss_pred             HHHHHHhCCEecCCCChhhEEEE-CCCEEEEEcccceecC
Confidence            357899 9999999999999998 7889999999986544

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=98.42  E-value=1.6e-07  Score=63.79  Aligned_cols=39  Identities=38%  Similarity=0.825  Sum_probs=35.0

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||..+++|++++|.||+++.+..++++|||+++...
T Consensus       119 l~~lH~~~ivH~di~p~nil~~~~~~~~l~dfg~~~~~~  157 (267)
T cd06628         119 LNYLHNRGIIHRDIKGANILVDNKGGIKISDFGISKKLE  157 (267)
T ss_pred             HHHHHhcCcccccCCHHHEEEcCCCCEEecccCCCcccc
Confidence            468999999999999999999999999999999886554

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=98.41  E-value=1.4e-07  Score=73.22  Aligned_cols=39  Identities=41%  Similarity=0.831  Sum_probs=35.5

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||..+|+|++|+|.||++...+.++|+|||+++...
T Consensus       117 L~yLH~~gIiHrDLKP~NILl~~~g~vkL~DFGls~~~~  155 (669)
T cd05610         117 LDYLHRHGIIHRDLKPDNMLISNEGHIKLTDFGLSKVTL  155 (669)
T ss_pred             HHHHHhCCEEeCCccHHHEEEcCCCCEEEEeCCCCcccc
Confidence            468999999999999999999988999999999987543

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=98.41  E-value=2.5e-07  Score=62.90  Aligned_cols=39  Identities=31%  Similarity=0.620  Sum_probs=34.9

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|+|..+++|++|++.||+++....++++|||++....
T Consensus       115 L~~lH~~~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~  153 (260)
T cd05073         115 MAFIEQRNYIHRDLRAANILVSASLVCKIADFGLARVIE  153 (260)
T ss_pred             HHHHHhCCccccccCcceEEEcCCCcEEECCCcceeecc
Confidence            468999999999999999999999999999999886543

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=98.41  E-value=1.6e-07  Score=64.09  Aligned_cols=61  Identities=26%  Similarity=0.287  Sum_probs=42.8

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCC-CCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSY-TSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~-~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||..+++|+++++.||+++.+..++|+|||++......... .......++.+|.+|+.
T Consensus       119 l~~LH~~~i~H~~l~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~  180 (266)
T cd06651         119 MSYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKRLQTICMSGTGIRSVTGTPYWMSPEV  180 (266)
T ss_pred             HHHHHhCCeeeCCCCHHHEEECCCCCEEEccCCCccccccccccCCccccCCccccccCHHH
Confidence            46899999999999999999998889999999998654321111 11122234555666654

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=98.41  E-value=1.7e-07  Score=64.15  Aligned_cols=39  Identities=41%  Similarity=0.795  Sum_probs=35.0

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||+.+++|+++++.||+++..+.++++|||++....
T Consensus       112 l~~lH~~~i~H~dl~p~ni~~~~~~~~~l~dfg~~~~~~  150 (286)
T cd07832         112 VAYMHANGIMHRDLKPANLLISADGVLKIADFGLARLFS  150 (286)
T ss_pred             HHHHHHCCeecCCcCHHHEEEcCCCcEEEeeeeeccccc
Confidence            468999999999999999999998999999999886554

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=98.40  E-value=1.6e-07  Score=63.49  Aligned_cols=62  Identities=26%  Similarity=0.316  Sum_probs=44.6

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCC--CCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYT--SNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~--~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||..+++|+++++.||+++.+..++|+|||++..........  ......++.+|.+|+..
T Consensus       115 l~~lh~~~i~h~~l~p~ni~~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~y~~Pe~~  178 (267)
T cd06610         115 LEYLHSNGQIHRDIKAGNILLGEDGSVKIADFGVSASLADGGDRTRKVRKTFVGTPCWMAPEVM  178 (267)
T ss_pred             HHHHHhCCeecCCCCHHhEEEcCCCCEEEcccchHHHhccCccccccccccccCChhhcChHHH
Confidence            468999999999999999999988999999999886554333221  12223345566666643

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=98.40  E-value=1.5e-07  Score=65.65  Aligned_cols=39  Identities=36%  Similarity=0.609  Sum_probs=35.3

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||+.+++|++|++.||+++..+.++|+|||++....
T Consensus       121 l~~lH~~~i~H~dl~p~nil~~~~~~~kL~dfg~~~~~~  159 (309)
T cd07845         121 LQYLHENFIIHRDLKVSNLLLTDKGCLKIADFGLARTYG  159 (309)
T ss_pred             HHHHHhCCeecCCCCHHHEEECCCCCEEECccceeeecC
Confidence            468999999999999999999999999999999987554

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=98.40  E-value=2.4e-07  Score=63.86  Aligned_cols=38  Identities=32%  Similarity=0.600  Sum_probs=34.1

Q ss_pred             CccchhCCccccCCCCCceEEec-CCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEK-NNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~-~~~~kl~dfgla~~~   38 (93)
                      |.|||..+++|+++++.||+++. ++.++|+|||++...
T Consensus       123 L~~LH~~~i~H~dl~~~nil~~~~~~~~kl~dfg~~~~~  161 (295)
T cd07837         123 VAHCHKHGVMHRDLKPQNLLVDKQKGLLKIADLGLGRAF  161 (295)
T ss_pred             HHHHHHCCeeecCCChHHEEEecCCCeEEEeecccceec
Confidence            46899999999999999999997 788999999998644

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=98.40  E-value=1.9e-07  Score=63.43  Aligned_cols=59  Identities=24%  Similarity=0.338  Sum_probs=42.6

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||.++++|++|++.||+++.++.++++|||++.........  .....+..+|.+|+.
T Consensus       119 l~~LH~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~~--~~~~~~~~~~~ape~  177 (267)
T cd08229         119 LEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTA--AHSLVGTPYYMSPER  177 (267)
T ss_pred             HHHHHHCCeecCCCCHHHEEEcCCCCEEECcchhhhccccCCcc--cccccCCcCccCHHH
Confidence            46899999999999999999999999999999987654322211  112234455655554

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=98.40  E-value=1.6e-07  Score=64.86  Aligned_cols=39  Identities=36%  Similarity=0.554  Sum_probs=35.3

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||..+++|++|++.||+++..+.++|+|||++....
T Consensus       119 L~~LH~~~i~H~dl~p~nili~~~~~~~l~d~g~~~~~~  157 (293)
T cd07843         119 VAHLHDNWILHRDLKTSNLLLNNRGILKICDFGLAREYG  157 (293)
T ss_pred             HHHHHHCCeeeccCCHHHEEECCCCcEEEeecCceeecc
Confidence            468999999999999999999999999999999886544

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>KOG0603|consensus

Probab=98.40  E-value=1.3e-07  Score=72.54  Aligned_cols=56  Identities=29%  Similarity=0.501  Sum_probs=42.1

Q ss_pred             CccchhCCccccCCCCCceEE-ecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFI-EKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill-~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      +.|||.+|++||||+|.||++ +..+.++|++||+++.....     ....+.+..|.+|+.
T Consensus       428 v~~LH~~gvvhRDLkp~NIL~~~~~g~lrltyFG~a~~~~~~-----~~tp~~t~~y~APEv  484 (612)
T KOG0603|consen  428 VDYLHEQGVVHRDLKPGNILLDGSAGHLRLTYFGFWSELERS-----CDTPALTLQYVAPEV  484 (612)
T ss_pred             HHHHHhcCeeecCCChhheeecCCCCcEEEEEechhhhCchh-----hcccchhhcccChhh
Confidence            468999999999999999999 57788999999998765543     223344455555554

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=98.40  E-value=2.4e-07  Score=63.36  Aligned_cols=39  Identities=28%  Similarity=0.636  Sum_probs=35.1

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||..+++|+++++.||+++..+.++|+|||++....
T Consensus       113 l~~LH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~  151 (286)
T cd07847         113 VNFCHKHNCIHRDVKPENILITKQGQIKLCDFGFARILT  151 (286)
T ss_pred             HHHHHHCCceecCCChhhEEEcCCCcEEECccccceecC
Confidence            468999999999999999999998999999999986543

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=98.40  E-value=2.1e-07  Score=63.72  Aligned_cols=61  Identities=20%  Similarity=0.308  Sum_probs=43.7

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||..+++|+++++.||+++.++.++|+|||++........... ....+..+|.||+..
T Consensus       113 l~~LH~~~i~H~dl~~~ni~~~~~~~~kl~d~g~~~~~~~~~~~~~-~~~~~~~~~~~PE~~  173 (288)
T cd07833         113 IAYCHSHNIIHRDIKPENILVSESGVLKLCDFGFARALRARPASPL-TDYVATRWYRAPELL  173 (288)
T ss_pred             HHHHHHCCeecCCCCHHHeEECCCCCEEEEeeecccccCCCccccc-cCcccccCCcCCchh
Confidence            4689999999999999999999999999999999866543332111 112334456666543

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=98.39  E-value=1.4e-07  Score=65.73  Aligned_cols=59  Identities=22%  Similarity=0.409  Sum_probs=42.3

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||+.+++|+++++.||+++.+..++|+|||++........  ......++..|.||+.
T Consensus       131 l~~LH~~~ivH~dlkp~Nill~~~~~~kL~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~  189 (292)
T cd06658         131 LSYLHNQGVIHRDIKSDSILLTSDGRIKLSDFGFCAQVSKEVP--KRKSLVGTPYWMAPEV  189 (292)
T ss_pred             HHHHHHCCEeecCCCHHHEEEcCCCCEEEccCcchhhcccccc--cCceeecCccccCHHH
Confidence            4689999999999999999999889999999998764332211  1112233455666664

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=98.39  E-value=1.8e-07  Score=63.86  Aligned_cols=38  Identities=21%  Similarity=0.345  Sum_probs=34.3

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|||+.+++|++++|.||+++..+.+++.+||++...
T Consensus       130 l~~LH~~~i~H~dlkp~Nili~~~~~~~l~~~~~~~~~  167 (275)
T cd05046         130 MDHLSNARFVHRDLAARNCLVSSQREVKVSLLSLSKDV  167 (275)
T ss_pred             HHHhhhcCcccCcCccceEEEeCCCcEEEccccccccc
Confidence            46899999999999999999999999999999987644

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=98.39  E-value=1.2e-07  Score=64.86  Aligned_cols=62  Identities=29%  Similarity=0.482  Sum_probs=43.5

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|++|.+.||+++.+..+||++||++.................+..|.|||.-
T Consensus       116 l~~Lh~~~iiH~~l~~~nill~~~~~~Kl~~f~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~  177 (259)
T PF07714_consen  116 LSYLHSNNIIHGNLSPSNILLDSNGQVKLSDFGLSRPISEKSKYKNDSSQQLPLRYLAPEVL  177 (259)
T ss_dssp             HHHHHHTTEEEST-SGGGEEEETTTEEEEESTTTGEETTTSSSEEESTTSESGGGGS-HHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            46899999999999999999999999999999998665322222222333345566666654

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>KOG4645|consensus

Probab=98.39  E-value=1.4e-07  Score=77.30  Aligned_cols=62  Identities=27%  Similarity=0.378  Sum_probs=46.4

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCC---CCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYT---SNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~---~~~~~~~~~~~~p~e~~   62 (93)
                      +.|||..||+|||+++.||+++.++.+|+.|||.|..........   .....++|.|+||+-.-
T Consensus      1347 la~LH~~gIVHRDIK~aNI~Ld~~g~iK~~DFGsa~ki~~~~~~~~~el~~~~GT~~YMAPEvit 1411 (1509)
T KOG4645|consen 1347 LAYLHEHGIVHRDIKPANILLDFNGLIKYGDFGSAVKIKNNAQTMPGELQSMMGTPMYMAPEVIT 1411 (1509)
T ss_pred             HHHHHhcCceecCCCccceeeecCCcEEeecccceeEecCchhcCCHHHHhhcCCchhcCchhhc
Confidence            468999999999999999999999999999999986554332221   23445566676666543

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=98.39  E-value=1.8e-07  Score=64.63  Aligned_cols=39  Identities=31%  Similarity=0.733  Sum_probs=35.3

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||..+++|+++++.||+++..+.++|+|||++....
T Consensus       129 L~~LH~~~i~H~dl~p~nili~~~~~~kl~dfg~~~~~~  167 (302)
T cd07864         129 LNYCHKKNFLHRDIKCSNILLNNKGQIKLADFGLARLYN  167 (302)
T ss_pred             HHHHHhCCeecCCCCHHHEEECCCCcEEeCccccccccc
Confidence            468999999999999999999999999999999986554

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=98.39  E-value=2.6e-07  Score=63.26  Aligned_cols=38  Identities=21%  Similarity=0.475  Sum_probs=31.9

Q ss_pred             CccchhCCccccCCCCCceEEecCCc-------EEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNK-------VVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~-------~kl~dfgla~~~   38 (93)
                      |.|||+++++|++++|.||++...+.       +++.|||++...
T Consensus       118 l~~lH~~~ivH~dlkp~Nill~~~~~~~~~~~~~~l~d~g~~~~~  162 (262)
T cd05077         118 LSYLEDKDLVHGNVCTKNILLAREGIDGECGPFIKLSDPGIPITV  162 (262)
T ss_pred             HHHhhhCCeECCCCCcccEEEecCCccCCCCceeEeCCCCCCccc
Confidence            46899999999999999999975543       789999987543

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>KOG0667|consensus

Probab=98.39  E-value=1.4e-07  Score=72.34  Aligned_cols=42  Identities=33%  Similarity=0.610  Sum_probs=34.6

Q ss_pred             CccchhCCccccCCCCCceEEec--CCcEEEeeccccccccccC
Q psy700            1 MGYLHARGILHKDLKSKNIFIEK--NNKVVITDFGLFNFSKLYN   42 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~--~~~~kl~dfgla~~~~~~~   42 (93)
                      |.+||..+|||.||||.|||+..  ...+||+|||.|++.....
T Consensus       302 L~~L~~l~IIHcDLKPENILL~~~~r~~vKVIDFGSSc~~~q~v  345 (586)
T KOG0667|consen  302 LLFLHELGIIHCDLKPENILLKDPKRSRIKVIDFGSSCFESQRV  345 (586)
T ss_pred             HHHHHhCCeeeccCChhheeeccCCcCceeEEecccccccCCcc
Confidence            45799999999999999999963  3468999999998765433

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=98.38  E-value=2.1e-07  Score=61.81  Aligned_cols=58  Identities=28%  Similarity=0.408  Sum_probs=43.2

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.+||..+++|+++++.||+++..+.++|.|||++........   .....+...|.||+.
T Consensus       111 l~~lh~~~i~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~---~~~~~~~~~~~~PE~  168 (253)
T cd05122         111 LEYLHSNGIIHRDIKAANILLTSDGEVKLIDFGLSAQLSDTKA---RNTMVGTPYWMAPEV  168 (253)
T ss_pred             HHHhhcCCEecCCCCHHHEEEccCCeEEEeecccccccccccc---ccceecCCcccCHHH
Confidence            4689999999999999999999999999999998765543321   222334555666664

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=98.38  E-value=2.4e-07  Score=62.85  Aligned_cols=60  Identities=23%  Similarity=0.401  Sum_probs=43.0

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||..+++|+++++.||+++.+..++++|||++......... .......+..|.+|+.
T Consensus       115 l~~LH~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~-~~~~~~~~~~y~~pe~  174 (260)
T cd05067         115 MAFIERKNYIHRDLRAANILVSETLCCKIADFGLARLIEDNEYT-AREGAKFPIKWTAPEA  174 (260)
T ss_pred             HHHHhcCCeecccccHHhEEEcCCCCEEEccCcceeecCCCCcc-cccCCcccccccCHHH
Confidence            46899999999999999999999999999999998654422211 1122233455666653

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=98.38  E-value=2.3e-07  Score=63.28  Aligned_cols=39  Identities=36%  Similarity=0.660  Sum_probs=34.7

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      +.|||.++++|+++++.||+++.+..++++|||++....
T Consensus       119 l~~lH~~g~~H~dl~p~nili~~~~~~kl~dfg~~~~~~  157 (269)
T cd05065         119 MKYLSEMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLE  157 (269)
T ss_pred             HHHHHHCCEeecccChheEEEcCCCcEEECCCccccccc
Confidence            468999999999999999999988899999999876543

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=98.38  E-value=2e-07  Score=63.14  Aligned_cols=39  Identities=38%  Similarity=0.710  Sum_probs=35.0

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      +.|||.++++|+++++.||+++.+..++++|||++....
T Consensus       116 l~~lh~~~i~h~di~p~nili~~~~~~~l~d~g~~~~~~  154 (261)
T cd05034         116 MAYLESRNYIHRDLAARNILVGENLVCKIADFGLARLIE  154 (261)
T ss_pred             HHHHHhCCcccCCcchheEEEcCCCCEEECccccceecc
Confidence            468999999999999999999999999999999986543

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>KOG4236|consensus

Probab=98.38  E-value=1.7e-07  Score=71.92  Aligned_cols=59  Identities=25%  Similarity=0.360  Sum_probs=45.1

Q ss_pred             CccchhCCccccCCCCCceEEecC---CcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKN---NKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~---~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||-++|+|.||+|.|++++..   -.+||+|||+|++.+..  .......+.|.|.+|+.-
T Consensus       677 Lr~LH~knIvHCDLKPENVLLas~~~FPQvKlCDFGfARiIgEk--sFRrsVVGTPAYLaPEVL  738 (888)
T KOG4236|consen  677 LRYLHFKNIVHCDLKPENVLLASASPFPQVKLCDFGFARIIGEK--SFRRSVVGTPAYLAPEVL  738 (888)
T ss_pred             HHHhhhcceeeccCCchheeeccCCCCCceeeccccceeecchh--hhhhhhcCCccccCHHHH
Confidence            468999999999999999999743   36899999999876532  233455667777777653

>PRK12274 serine/threonine protein kinase; Provisional

Probab=98.38  E-value=2.3e-07  Score=63.76  Aligned_cols=39  Identities=28%  Similarity=0.480  Sum_probs=34.1

Q ss_pred             CccchhCCccccCC-CCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDL-KSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdl-k~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.++|.+|++|+|| ++.||+++.++.++|+|||++....
T Consensus       104 L~~lH~~GIvHrDL~kp~NILv~~~g~i~LIDFG~A~~~~  143 (218)
T PRK12274        104 LQQLHRCGVAHNDLAKEANWLVQEDGSPAVIDFQLAVRGN  143 (218)
T ss_pred             HHHHHHCcCccCCCCCcceEEEcCCCCEEEEECCCceecC
Confidence            35799999999999 6899999988889999999987443

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=98.37  E-value=1.9e-07  Score=63.74  Aligned_cols=39  Identities=36%  Similarity=0.652  Sum_probs=34.9

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      +.|||..+++|+++++.||+++.+..++++|||++....
T Consensus       119 l~~lH~~~i~h~dlkp~nili~~~~~~~l~dfg~~~~~~  157 (267)
T cd05066         119 MKYLSDMGYVHRDLAARNILVNSNLVCKVSDFGLSRVLE  157 (267)
T ss_pred             HHHHHHCCEeehhhchhcEEECCCCeEEeCCCCcccccc
Confidence            368999999999999999999988999999999987544

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=98.37  E-value=2.4e-07  Score=63.86  Aligned_cols=60  Identities=27%  Similarity=0.330  Sum_probs=42.5

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||..+++|+++++.||+++.++.++++|||++........... ....++..|.+|+.
T Consensus       118 l~~lH~~~~~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~-~~~~~~~~y~aPE~  177 (288)
T cd05583         118 LDHLHQLGIIYRDIKLENILLDSEGHVVLTDFGLSKEFLAEEEERA-YSFCGTIEYMAPEV  177 (288)
T ss_pred             HHHHHHCCeeccCCCHHHeEECCCCCEEEEECcccccccccccccc-ccccCCccccCHHH
Confidence            4689999999999999999999888999999999865443322111 12233445555554

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=98.37  E-value=2.2e-07  Score=62.44  Aligned_cols=39  Identities=46%  Similarity=0.868  Sum_probs=34.9

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||..+++|+++++.||+++.++.++++|||++....
T Consensus       106 L~~lH~~~i~H~di~~~nil~~~~~~~~l~dfg~~~~~~  144 (265)
T cd05579         106 LEYLHSNGIIHRDLKPDNILIDSNGHLKLTDFGLSKVGL  144 (265)
T ss_pred             HHHHHHcCeecCCCCHHHeEEcCCCCEEEEecccchhcc
Confidence            468999999999999999999999999999999876543

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=98.37  E-value=1.8e-07  Score=65.23  Aligned_cols=60  Identities=23%  Similarity=0.366  Sum_probs=43.3

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||..+++|+++++.||+++.++.++|+|||++........  ......++.+|.||+.-
T Consensus       130 L~~LH~~~ivH~dl~p~Nill~~~~~~kL~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~  189 (297)
T cd06659         130 LCYLHSQGVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVP--KRKSLVGTPYWMAPEVI  189 (297)
T ss_pred             HHHHHhCCeecCCCCHHHeEEccCCcEEEeechhHhhcccccc--cccceecCccccCHHHH
Confidence            4689999999999999999999999999999998754332111  11223345566666643

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=98.37  E-value=2e-07  Score=64.94  Aligned_cols=38  Identities=34%  Similarity=0.705  Sum_probs=34.4

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|||..+++|++|++.||+++.++.++++|||++...
T Consensus       129 L~~LH~~gi~H~dLkp~Nill~~~~~~kl~dfg~~~~~  166 (296)
T cd06654         129 LEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQI  166 (296)
T ss_pred             HHHHHHCCcccCCCCHHHEEEcCCCCEEECccccchhc
Confidence            46899999999999999999999899999999987653

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=98.37  E-value=2.3e-07  Score=64.67  Aligned_cols=38  Identities=34%  Similarity=0.713  Sum_probs=34.4

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|||+.+++|++|++.||+++.++.++++|||++...
T Consensus       128 L~~LH~~~i~H~dL~p~Nili~~~~~~~l~Dfg~~~~~  165 (297)
T cd06656         128 LDFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQI  165 (297)
T ss_pred             HHHHHHCCcccCCCCHHHEEECCCCCEEECcCccceEc
Confidence            46899999999999999999999999999999987654

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>KOG0690|consensus

Probab=98.37  E-value=1.8e-07  Score=68.39  Aligned_cols=58  Identities=33%  Similarity=0.543  Sum_probs=44.1

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEE   60 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e   60 (93)
                      |.|||+++|++|+++..|++++.++.+|+.|||+++-...+.  .....++++.-|.+|+
T Consensus       281 L~YLHs~~ivYRDlKLENLlLDkDGHIKitDFGLCKE~I~~g--~t~kTFCGTPEYLAPE  338 (516)
T KOG0690|consen  281 LGYLHSRNIVYRDLKLENLLLDKDGHIKITDFGLCKEEIKYG--DTTKTFCGTPEYLAPE  338 (516)
T ss_pred             hhhhhhCCeeeeechhhhheeccCCceEeeecccchhccccc--ceeccccCChhhcCch
Confidence            579999999999999999999999999999999986543222  2344455555444444

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=98.36  E-value=2.2e-07  Score=65.91  Aligned_cols=39  Identities=36%  Similarity=0.727  Sum_probs=35.1

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||+.+++|++|++.||+++..+.++|+|||++....
T Consensus       121 L~~LH~~~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~  159 (337)
T cd07858         121 LKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARTTS  159 (337)
T ss_pred             HHHHHhCCEecCCCCHHHEEEcCCCCEEECcCccccccC
Confidence            468999999999999999999988999999999986543

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=98.36  E-value=2.6e-07  Score=62.33  Aligned_cols=38  Identities=34%  Similarity=0.718  Sum_probs=34.4

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|||.++++|+++++.||+++..+.++++|||++...
T Consensus       114 l~~lh~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~  151 (262)
T cd06613         114 LAYLHETGKIHRDIKGANILLTEDGDVKLADFGVSAQL  151 (262)
T ss_pred             HHHHHhCCceecCCChhhEEECCCCCEEECccccchhh
Confidence            46899999999999999999999999999999987654

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=98.36  E-value=3.7e-07  Score=61.67  Aligned_cols=39  Identities=41%  Similarity=0.725  Sum_probs=35.0

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||.++++|+++++.||+++..+.++++|||++....
T Consensus       113 l~~lH~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~  151 (255)
T cd08219         113 VQHIHEKRVLHRDIKSKNIFLTQNGKVKLGDFGSARLLT  151 (255)
T ss_pred             HHHHhhCCcccCCCCcceEEECCCCcEEEcccCcceeec
Confidence            468999999999999999999989999999999986553

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=98.35  E-value=2.8e-07  Score=65.49  Aligned_cols=38  Identities=29%  Similarity=0.649  Sum_probs=33.3

Q ss_pred             CccchhC-CccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHAR-GILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~-~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|||.. +++|++|++.||+++..+.++|+|||++...
T Consensus       116 l~~lH~~~~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~  154 (333)
T cd06650         116 LTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQL  154 (333)
T ss_pred             HHHHHhcCCEEecCCChhhEEEcCCCCEEEeeCCcchhh
Confidence            4689975 7999999999999998889999999998644

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=98.35  E-value=3e-07  Score=63.53  Aligned_cols=37  Identities=32%  Similarity=0.688  Sum_probs=33.6

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNF   37 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~   37 (93)
                      +.|||..+++|+++++.||+++.++.++|+|||++..
T Consensus       123 l~~lH~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~  159 (292)
T cd06644         123 LQYLHSMKIIHRDLKAGNVLLTLDGDIKLADFGVSAK  159 (292)
T ss_pred             HHHHhcCCeeecCCCcceEEEcCCCCEEEccCcccee
Confidence            4689999999999999999999888999999998754

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=98.35  E-value=3.3e-07  Score=61.85  Aligned_cols=39  Identities=38%  Similarity=0.767  Sum_probs=35.1

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||+.+++|+++++.||+++....++++|||++....
T Consensus       114 l~~lh~~~i~h~dl~p~ni~~~~~~~~kl~d~~~~~~~~  152 (256)
T cd08221         114 VSYIHKAGILHRDIKTLNIFLTKAGLIKLGDFGISKILG  152 (256)
T ss_pred             HHHHHhCCccccCCChHhEEEeCCCCEEECcCcceEEcc
Confidence            468999999999999999999999999999999986553

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=98.35  E-value=2.7e-07  Score=62.95  Aligned_cols=40  Identities=40%  Similarity=0.733  Sum_probs=35.6

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKL   40 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~   40 (93)
                      |.|||..+++|+++++.||+++.++.++++|||++.....
T Consensus       113 l~~LH~~~~~h~dl~p~nil~~~~~~~~l~d~g~~~~~~~  152 (287)
T cd07840         113 LQYLHSNGILHRDIKGSNILINNDGVLKLADFGLARPYTK  152 (287)
T ss_pred             HHHHHHCCceeccCcHHHeEEcCCCCEEEccccceeeccC
Confidence            4689999999999999999999999999999999865543

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=98.35  E-value=2.6e-07  Score=63.46  Aligned_cols=39  Identities=36%  Similarity=0.576  Sum_probs=34.9

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||..+++|++|++.||+++.++.++|+|||++....
T Consensus       108 l~~lH~~~i~H~di~p~Nil~~~~~~~~l~dfg~~~~~~  146 (277)
T cd05577         108 LEHLHQRRIVYRDLKPENVLLDDHGNVRISDLGLAVELK  146 (277)
T ss_pred             HHHHHhCCcccCCCCHHHEEECCCCCEEEccCcchhhhc
Confidence            468999999999999999999999999999999876543

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=98.35  E-value=2.8e-07  Score=63.11  Aligned_cols=59  Identities=20%  Similarity=0.308  Sum_probs=42.3

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||+.+++|+++++.||+++.++.++++|||++.........  ......+.+|.+|+.
T Consensus       113 l~~LH~~~i~h~~l~p~ni~~~~~~~~~l~dfg~~~~~~~~~~~--~~~~~~~~~y~aPE~  171 (286)
T cd07846         113 IEFCHSHNIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGEV--YTDYVATRWYRAPEL  171 (286)
T ss_pred             HHHHHHCCccccCCCHHHEEECCCCcEEEEeeeeeeeccCCccc--cCcccceeeccCcHH
Confidence            46899999999999999999999999999999997654322211  111223455555654

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=98.35  E-value=3.4e-07  Score=62.79  Aligned_cols=39  Identities=28%  Similarity=0.517  Sum_probs=34.8

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||+.+++|+++++.||+++..+.++++|||++....
T Consensus       137 l~~lH~~~i~H~dlkp~nili~~~~~~kl~dfg~~~~~~  175 (286)
T cd06638         137 LQHLHVNKTIHRDVKGNNILLTTEGGVKLVDFGVSAQLT  175 (286)
T ss_pred             HHHHHhCCccccCCCHHhEEECCCCCEEEccCCceeecc
Confidence            468999999999999999999988899999999986543

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=98.35  E-value=3.2e-07  Score=63.96  Aligned_cols=37  Identities=43%  Similarity=0.820  Sum_probs=34.0

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNF   37 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~   37 (93)
                      |.|||+.+++|++++|.||+++..+.++++|||+++.
T Consensus       114 l~~lH~~~i~H~dl~p~NIll~~~~~~~l~dfg~~~~  150 (305)
T cd05609         114 LEYLHNYGIVHRDLKPDNLLITSMGHIKLTDFGLSKI  150 (305)
T ss_pred             HHHHHHCCccccCCchHHEEECCCCCEEEeeCCCccc
Confidence            4689999999999999999999999999999998764

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=98.35  E-value=3.4e-07  Score=63.91  Aligned_cols=38  Identities=37%  Similarity=0.713  Sum_probs=34.4

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|||..+++|++|++.||+++.++.++|.|||++...
T Consensus       116 l~~lH~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~  153 (316)
T cd05574         116 LEYLHLLGIVYRDLKPENILLHESGHIMLSDFDLSKQS  153 (316)
T ss_pred             HHHHHHCCeeccCCChHHeEEcCCCCEEEeecchhhcc
Confidence            46899999999999999999999999999999987644

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=98.35  E-value=4.6e-07  Score=60.85  Aligned_cols=39  Identities=44%  Similarity=0.637  Sum_probs=35.1

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||+.+++|+++++.||+++....++|+|||++....
T Consensus       116 l~~lh~~~i~h~~l~~~ni~~~~~~~~kl~d~g~~~~~~  154 (256)
T cd08530         116 LQALHEQKILHRDLKSANILLVANDLVKIGDLGISKVLK  154 (256)
T ss_pred             HHHHhhCCcccCCCCcceEEEecCCcEEEeeccchhhhc
Confidence            468999999999999999999998899999999986654

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=98.34  E-value=3e-07  Score=64.13  Aligned_cols=38  Identities=34%  Similarity=0.709  Sum_probs=34.3

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|||+.+++|++|++.||+++.++.++++|||++...
T Consensus       128 l~~LH~~~i~H~dL~p~Nili~~~~~~kl~dfg~~~~~  165 (296)
T cd06655         128 LEFLHANQVIHRDIKSDNVLLGMDGSVKLTDFGFCAQI  165 (296)
T ss_pred             HHHHHHCCcccCCCCHHHEEECCCCCEEEccCccchhc
Confidence            46899999999999999999999999999999987654

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=98.34  E-value=3e-07  Score=63.41  Aligned_cols=39  Identities=31%  Similarity=0.554  Sum_probs=34.7

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||..+++|+++++.||+++..+.++++|||++....
T Consensus       141 l~~lH~~~ivH~dlkp~nili~~~~~~kl~dfg~~~~~~  179 (291)
T cd06639         141 LQHLHNNRIIHRDVKGNNILLTTEGGVKLVDFGVSAQLT  179 (291)
T ss_pred             HHHHHhCCeeccCCCHHHEEEcCCCCEEEeecccchhcc
Confidence            468999999999999999999988899999999876543

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=98.34  E-value=2.2e-07  Score=63.05  Aligned_cols=39  Identities=33%  Similarity=0.635  Sum_probs=35.0

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||.++++|++|++.||+++.++.++++|||++....
T Consensus       119 l~~LH~~~i~H~dl~~~nil~~~~~~~~l~d~g~~~~~~  157 (267)
T cd08228         119 VEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFS  157 (267)
T ss_pred             HHHHhhCCeeCCCCCHHHEEEcCCCCEEECccccceecc
Confidence            468999999999999999999998999999999876543

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=98.34  E-value=3.5e-07  Score=61.89  Aligned_cols=39  Identities=33%  Similarity=0.635  Sum_probs=34.8

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||..+++|+++++.||+++.++.++++|||++....
T Consensus       119 l~~lh~~~i~h~dl~p~nil~~~~~~~~l~d~~~~~~~~  157 (267)
T cd08224         119 LEHMHSKRIMHRDIKPANVFITATGVVKLGDLGLGRFFS  157 (267)
T ss_pred             HHHHHhCCEecCCcChhhEEECCCCcEEEeccceeeecc
Confidence            468999999999999999999999999999999976543

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=98.34  E-value=5.3e-07  Score=61.43  Aligned_cols=39  Identities=38%  Similarity=0.707  Sum_probs=35.1

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||.++++|+++++.||++..++.++++|||++....
T Consensus       111 l~~LH~~~i~H~~l~~~ni~~~~~~~~~l~d~g~~~~~~  149 (282)
T cd07829         111 LAYCHSHRILHRDLKPQNILINRDGVLKLADFGLARAFG  149 (282)
T ss_pred             HHHHHHCCcccCCCChheEEEcCCCCEEEecCCcccccC
Confidence            468999999999999999999999999999999886554

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=98.33  E-value=2.7e-07  Score=63.29  Aligned_cols=38  Identities=32%  Similarity=0.654  Sum_probs=34.5

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|||+.+++|+++++.||++...+.++++|||++...
T Consensus       134 l~~LH~~~ivH~dl~~~nili~~~~~~~l~dfg~~~~~  171 (282)
T cd06636         134 LAHLHAHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQL  171 (282)
T ss_pred             HHHHHHCCcccCCCCHHHEEECCCCCEEEeeCcchhhh
Confidence            46899999999999999999999999999999987644

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=98.33  E-value=3.7e-07  Score=65.08  Aligned_cols=38  Identities=34%  Similarity=0.723  Sum_probs=34.6

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|||+.+++|+++++.||+++.++.++++|||++...
T Consensus       133 L~~LH~~~ivH~dlkp~NIll~~~~~~kl~dfg~~~~~  170 (345)
T cd07877         133 LKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHT  170 (345)
T ss_pred             HHHHHHCCeeecCCChHHEEEcCCCCEEEecccccccc
Confidence            46899999999999999999999999999999998654

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=98.33  E-value=2.6e-07  Score=62.94  Aligned_cols=38  Identities=34%  Similarity=0.593  Sum_probs=34.4

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|||+.+++|+++++.||+++.++.+++.|||+++..
T Consensus       119 l~~LH~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~  156 (264)
T cd06653         119 VSYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKRI  156 (264)
T ss_pred             HHHHHhCCEecCCCCHHHEEEcCCCCEEECcccccccc
Confidence            46899999999999999999998889999999998654

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=98.33  E-value=3.5e-07  Score=62.05  Aligned_cols=39  Identities=41%  Similarity=0.750  Sum_probs=35.1

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|+|+.+++|+++++.||+++.++.++|+|||++....
T Consensus       106 l~~lH~~~~~h~dl~~~nilv~~~~~~~l~df~~~~~~~  144 (262)
T cd05572         106 FEYLHNRGIIYRDLKPENLLLDSNGYVKLVDFGFAKKLK  144 (262)
T ss_pred             HHHHhhCCcccCCCCHHHEEEcCCCCEEEeeCCcccccC
Confidence            468999999999999999999999999999999986553

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=98.33  E-value=2.9e-07  Score=63.64  Aligned_cols=39  Identities=41%  Similarity=0.716  Sum_probs=35.1

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||+.+++|+++++.||++..++.++++|||++....
T Consensus       128 l~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~  166 (311)
T cd07866         128 INYLHENHILHRDIKAANILIDNQGILKIADFGLARPYD  166 (311)
T ss_pred             HHHHHhCCeecCCCCHHHEEECCCCCEEECcCccchhcc
Confidence            468999999999999999999999999999999986543

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>KOG1006|consensus

Probab=98.33  E-value=1.5e-07  Score=66.96  Aligned_cols=32  Identities=31%  Similarity=0.651  Sum_probs=29.0

Q ss_pred             CCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            7 RGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         7 ~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      ..+||||++|+|||++..+.+||+|||++...
T Consensus       187 lkiIHRDvKPSNILldr~G~vKLCDFGIcGqL  218 (361)
T KOG1006|consen  187 LKIIHRDVKPSNILLDRHGDVKLCDFGICGQL  218 (361)
T ss_pred             hhhhhccCChhheEEecCCCEeeecccchHhH
Confidence            47999999999999999999999999997543

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=98.33  E-value=3.5e-07  Score=61.23  Aligned_cols=59  Identities=25%  Similarity=0.380  Sum_probs=42.6

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      +.|||+.+++|+++++.||+++..+.++++|||++.........  .....+...|.+|+.
T Consensus       112 l~~lH~~~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~--~~~~~~~~~y~~pe~  170 (254)
T cd06627         112 LAYLHEQGVIHRDIKAANILTTKDGVVKLADFGVATKLNDVSKD--DASVVGTPYWMAPEV  170 (254)
T ss_pred             HHHHhhCCcccCCCCHHHEEECCCCCEEEeccccceecCCCccc--ccccccchhhcCHhh
Confidence            36899999999999999999998889999999988655433221  122233445555554

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=98.32  E-value=5.1e-07  Score=62.38  Aligned_cols=39  Identities=36%  Similarity=0.727  Sum_probs=33.3

Q ss_pred             CccchhCCccccCCCCCceEEec-CCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEK-NNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~-~~~~kl~dfgla~~~~   39 (93)
                      |.|||.++++|++|++.||+++. +..++++|||++....
T Consensus       115 L~~LH~~~i~H~dl~p~nill~~~~~~~kl~dfg~~~~~~  154 (294)
T PLN00009        115 IAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFG  154 (294)
T ss_pred             HHHHHhCCeeCCCCCcceEEEECCCCEEEEcccccccccC
Confidence            46899999999999999999984 5578999999986543

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=98.32  E-value=2.3e-07  Score=62.00  Aligned_cols=35  Identities=23%  Similarity=0.287  Sum_probs=30.6

Q ss_pred             ccc-hhCCccccCCCCCceEEecCCcEEEeecccccc
Q psy700            2 GYL-HARGILHKDLKSKNIFIEKNNKVVITDFGLFNF   37 (93)
Q Consensus         2 ~~l-hs~~iihrdlk~~nill~~~~~~kl~dfgla~~   37 (93)
                      .++ |..+++|+|++|.||+++ .+.++|+|||+|..
T Consensus       131 ~~l~H~~giiHrDlkP~NIli~-~~~v~LiDFG~a~~  166 (190)
T cd05147         131 RILYQDCRLVHADLSEYNLLYH-DGKLYIIDVSQSVE  166 (190)
T ss_pred             HHHHHhCCcccCCCCHHHEEEE-CCcEEEEEcccccc
Confidence            567 689999999999999998 46799999999854

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=98.32  E-value=3.3e-07  Score=62.48  Aligned_cols=40  Identities=35%  Similarity=0.664  Sum_probs=35.5

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKL   40 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~   40 (93)
                      |.|||..+++|+++++.||+++.++.++++|||++.....
T Consensus       111 l~~LH~~~i~H~dl~p~nili~~~~~~~l~df~~~~~~~~  150 (283)
T cd05118         111 LAFCHSHGILHRDLKPENLLINTEGVLKLADFGLARSFGS  150 (283)
T ss_pred             HHHHHHCCeeecCcCHHHEEECCCCcEEEeeeeeeEecCC
Confidence            4689999999999999999999889999999998865543

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=98.32  E-value=3.1e-07  Score=62.93  Aligned_cols=38  Identities=32%  Similarity=0.682  Sum_probs=34.6

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|||..+++|+++++.||+++.++.++++|||++...
T Consensus       113 l~~lh~~~i~H~~l~p~nill~~~~~~~l~dfg~~~~~  150 (284)
T cd07860         113 LAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAF  150 (284)
T ss_pred             HHHHHHCCeecCCCCHHHEEECCCCCEEEeeccchhhc
Confidence            46899999999999999999999999999999997654

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=98.32  E-value=3.4e-07  Score=62.64  Aligned_cols=38  Identities=34%  Similarity=0.848  Sum_probs=34.2

Q ss_pred             CccchhC-CccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHAR-GILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~-~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|||++ +++|+++++.||+++.++.++++|||++...
T Consensus       116 l~~lH~~~~i~h~dlkp~nil~~~~~~~kl~dfg~~~~~  154 (283)
T cd06617         116 LEYLHSKLSVIHRDVKPSNVLINRNGQVKLCDFGISGYL  154 (283)
T ss_pred             HHHHhhcCCeecCCCCHHHEEECCCCCEEEeeccccccc
Confidence            4689987 9999999999999999999999999998654

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=98.32  E-value=3.1e-07  Score=64.50  Aligned_cols=41  Identities=37%  Similarity=0.626  Sum_probs=36.2

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLY   41 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~   41 (93)
                      |.|||+.+++|++|++.||+++.++.++|+|||++......
T Consensus       116 l~~LH~~gi~H~dlkp~nili~~~~~~~L~dfg~~~~~~~~  156 (330)
T cd07834         116 LKYLHSANVIHRDLKPSNILVNSNCDLKICDFGLARGVDPD  156 (330)
T ss_pred             HHHHHhCCeecCCCCHHHEEEcCCCCEEEcccCceEeeccc
Confidence            46899999999999999999999999999999998765433

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=98.32  E-value=4.2e-07  Score=62.04  Aligned_cols=37  Identities=32%  Similarity=0.636  Sum_probs=33.6

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|||..+++|+++++.||+++. +.++|+|||++...
T Consensus       113 L~~LH~~~i~H~dl~p~ni~l~~-~~~kl~dfg~~~~~  149 (282)
T cd07831         113 LDHMHRNGIFHRDIKPENILIKD-DILKLADFGSCRGI  149 (282)
T ss_pred             HHHHHHCCceecccCHHHEEEcC-CCeEEEeccccccc
Confidence            46899999999999999999998 89999999998654

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=98.32  E-value=3.4e-07  Score=62.03  Aligned_cols=38  Identities=39%  Similarity=0.769  Sum_probs=34.4

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|||+.+++|++|++.||++.....++++|||++...
T Consensus       110 L~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~  147 (260)
T cd05611         110 VEDLHQRGIIHRDIKPENLLIDQTGHLKLTDFGLSRNG  147 (260)
T ss_pred             HHHHHHCCeecCCCCHHHeEECCCCcEEEeecccceec
Confidence            46899999999999999999999899999999987653

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=98.31  E-value=3.6e-07  Score=62.44  Aligned_cols=39  Identities=31%  Similarity=0.735  Sum_probs=35.1

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||..+++|+++++.||+++..+.++++|||++....
T Consensus       114 l~~lh~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~  152 (277)
T cd06917         114 LKYIHKVGVIHRDIKAANILVTNTGNVKLCDFGVAALLN  152 (277)
T ss_pred             HHHHHhCCcccCCcCHHHEEEcCCCCEEEccCCceeecC
Confidence            468999999999999999999999999999999886554

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=98.31  E-value=3e-07  Score=65.40  Aligned_cols=38  Identities=37%  Similarity=0.766  Sum_probs=34.5

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|||..+++|++|++.||+++.++.++|+|||+++..
T Consensus       130 L~~LH~~~i~H~dlkp~NIll~~~~~~kL~dfg~~~~~  167 (342)
T cd07879         130 LKYIHSAGIIHRDLKPGNLAVNEDCELKILDFGLARHA  167 (342)
T ss_pred             HHHHHHCCcccCCCCHHHEEECCCCCEEEeeCCCCcCC
Confidence            46899999999999999999999999999999997643

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=98.31  E-value=3.5e-07  Score=61.46  Aligned_cols=39  Identities=36%  Similarity=0.708  Sum_probs=34.8

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      +.|||+.+++|+++++.||+++.++.++++|||++....
T Consensus       115 l~~lH~~~i~H~dl~~~ni~~~~~~~~kl~d~~~~~~~~  153 (258)
T cd06632         115 LEYLHDRNTVHRDIKGANILVDTNGVVKLADFGMAKQVV  153 (258)
T ss_pred             HHHHHHCCcccCCCCHHHEEECCCCCEEEccCccceecc
Confidence            468999999999999999999999999999999876543

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=98.30  E-value=5e-07  Score=61.02  Aligned_cols=62  Identities=27%  Similarity=0.408  Sum_probs=44.3

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCC--CCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTS--NEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~--~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+.+++|++|++.||+++..+.++|+|||++...........  ......+..|.||+..
T Consensus       112 l~~lh~~~i~H~dl~~~nil~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~  175 (264)
T cd06626         112 LAYLHSHGIVHRDIKPANIFLDHNGVIKLGDFGCAVKLKNNTTTMGEEVQSLAGTPAYMAPEVI  175 (264)
T ss_pred             HHHHHHCCcccCCCCHHHEEECCCCCEEEcccccccccCCCCCcccccccCCcCCcCccChhhc
Confidence            4689999999999999999999999999999999766543322211  1123345566666643

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=98.30  E-value=4.3e-07  Score=60.57  Aligned_cols=61  Identities=25%  Similarity=0.351  Sum_probs=43.3

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||+.+++|+++++.||++...+.++|+|||++....................|.||+.
T Consensus       114 l~~lh~~~~~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~y~~pE~  174 (260)
T cd06606         114 LAYLHSNGIVHRDIKGANILVDSDGVVKLADFGCAKRLGDIETGEGTGSVRGTPYWMAPEV  174 (260)
T ss_pred             HHHHHHCCccccCCCHHHEEEcCCCCEEEcccccEEecccccccccccCCCCCccccCHhh
Confidence            4689999999999999999999989999999999866543332111222233445555554

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=98.30  E-value=5.9e-07  Score=60.43  Aligned_cols=59  Identities=20%  Similarity=0.281  Sum_probs=42.4

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||..+++|+++++.||+++.++.+++.|||++........  ......+...|.||+.
T Consensus       112 l~~lh~~~i~H~dl~~~ni~~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~y~~PE~  170 (256)
T cd06612         112 LEYLHSNKKIHRDIKAGNILLNEEGQAKLADFGVSGQLTDTMA--KRNTVIGTPFWMAPEV  170 (256)
T ss_pred             HHHHHHCCcccCCCCcceEEECCCCcEEEcccccchhcccCcc--ccccccCCccccCHHH
Confidence            4689999999999999999999999999999999765432221  1111223445666664

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=98.30  E-value=3.5e-07  Score=61.89  Aligned_cols=38  Identities=37%  Similarity=0.743  Sum_probs=34.4

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|||+.+++|+++++.||+++.++.++|+|||++...
T Consensus       126 l~~lH~~~i~H~~l~p~ni~~~~~~~~~l~d~~~~~~~  163 (275)
T cd06608         126 LAYLHENKVIHRDIKGQNILLTKNAEVKLVDFGVSAQL  163 (275)
T ss_pred             HHHHhcCCcccCCCCHHHEEEccCCeEEECCCccceec
Confidence            46899999999999999999998999999999987654

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=98.29  E-value=4.2e-07  Score=64.72  Aligned_cols=38  Identities=39%  Similarity=0.759  Sum_probs=34.4

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|||..+++|+++++.||+++..+.++++|||++...
T Consensus       131 l~~LH~~gi~H~dlkp~Nill~~~~~~kl~dfg~~~~~  168 (343)
T cd07880         131 LKYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLARQT  168 (343)
T ss_pred             HHHHHhCCeecCCCCHHHEEEcCCCCEEEeeccccccc
Confidence            46899999999999999999998999999999998643

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=98.29  E-value=6.5e-07  Score=61.24  Aligned_cols=39  Identities=33%  Similarity=0.638  Sum_probs=35.0

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||+++++|+++++.||+++..+.++|+|||++....
T Consensus       112 l~~Lh~~~i~H~dl~~~ni~i~~~~~~~l~d~~~~~~~~  150 (283)
T cd07830         112 LAHIHKHGFFHRDLKPENLLVSGPEVVKIADFGLAREIR  150 (283)
T ss_pred             HHHHHHCCcccCCCChhhEEEcCCCCEEEeecccceecc
Confidence            468999999999999999999999999999999986543

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=98.29  E-value=5e-07  Score=62.43  Aligned_cols=39  Identities=38%  Similarity=0.664  Sum_probs=35.2

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||..+++|++|++.||+++.++.++|+|||++....
T Consensus       115 l~~lH~~~i~H~dl~p~nill~~~~~~~l~dfg~~~~~~  153 (298)
T cd07841         115 LEYLHSNWILHRDLKPNNLLIASDGVLKLADFGLARSFG  153 (298)
T ss_pred             HHHHHhCCeeecCCChhhEEEcCCCCEEEccceeeeecc
Confidence            468999999999999999999999999999999986543

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=98.29  E-value=4.3e-07  Score=61.69  Aligned_cols=38  Identities=29%  Similarity=0.591  Sum_probs=34.4

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|+|..+++|++|++.||++...+.++++|||++...
T Consensus       115 l~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~  152 (265)
T cd06631         115 VAYLHNNCVVHRDIKGNNVMLMPNGIIKLIDFGCARRL  152 (265)
T ss_pred             HHHHHhCCcccCCcCHHhEEECCCCeEEeccchhhHhh
Confidence            46899999999999999999998999999999987654

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>KOG0696|consensus

Probab=98.28  E-value=5.9e-07  Score=67.37  Aligned_cols=58  Identities=22%  Similarity=0.407  Sum_probs=42.8

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEE   60 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e   60 (93)
                      |.|||+++||+|+|+..||+++..+.+|++|||+++-.-....  ++.+++++.-|.+|+
T Consensus       463 LFFLh~kgIiYRDLKLDNvmLd~eGHiKi~DFGmcKEni~~~~--TTkTFCGTPdYiAPE  520 (683)
T KOG0696|consen  463 LFFLHSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIFDGV--TTKTFCGTPDYIAPE  520 (683)
T ss_pred             hhhhhcCCeeeeeccccceEeccCCceEeeecccccccccCCc--ceeeecCCCcccccc
Confidence            4689999999999999999999999999999999864432222  233444444444443

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=98.28  E-value=4.2e-07  Score=62.53  Aligned_cols=38  Identities=32%  Similarity=0.691  Sum_probs=33.4

Q ss_pred             Cccchh-CCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHA-RGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs-~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|||+ .+++|++|++.||+++..+.++++|||++...
T Consensus       120 l~~lh~~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~  158 (288)
T cd06616         120 LNYLKEELKIIHRDVKPSNILLDRNGNIKLCDFGISGQL  158 (288)
T ss_pred             HHHHhhcCCeeccCCCHHHEEEccCCcEEEeecchhHHh
Confidence            358887 49999999999999998899999999998654

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=98.28  E-value=5.4e-07  Score=61.74  Aligned_cols=59  Identities=20%  Similarity=0.290  Sum_probs=42.4

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      +.|||.++++|+++++.||++..++.+++.|||++........  ......++.+|.+|+.
T Consensus       114 l~~lH~~~ivH~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~  172 (277)
T cd06642         114 LDYLHSERKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQI--KRNTFVGTPFWMAPEV  172 (277)
T ss_pred             HHHHhcCCeeccCCChheEEEeCCCCEEEccccccccccCcch--hhhcccCcccccCHHH
Confidence            4689999999999999999999889999999999865432211  1112233455666654

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=98.28  E-value=5.2e-07  Score=62.42  Aligned_cols=38  Identities=34%  Similarity=0.819  Sum_probs=34.2

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|+|+.+++|++|++.||+++.++.++++|||++...
T Consensus       128 l~~lH~~~i~H~dl~p~Nil~~~~~~~~l~d~g~~~~~  165 (285)
T cd06648         128 LSFLHAQGVIHRDIKSDSILLTSDGRVKLSDFGFCAQV  165 (285)
T ss_pred             HHHHHhCCeecCCCChhhEEEcCCCcEEEcccccchhh
Confidence            46899999999999999999999999999999987644

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>KOG0574|consensus

Probab=98.27  E-value=1.1e-07  Score=68.88  Aligned_cols=62  Identities=26%  Similarity=0.375  Sum_probs=50.7

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEEE   63 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~~   63 (93)
                      |.|||...-|||+++..||+++..+..||+|||.|........ ......+.|+|++|+..++
T Consensus       142 L~YLH~~~KIHRDIKAGNILLNT~G~AKLADFGVAGQLTDTMA-KRNTVIGTPFWMAPEVI~E  203 (502)
T KOG0574|consen  142 LQYLHDLKKIHRDIKAGNILLNTDGIAKLADFGVAGQLTDTMA-KRNTVIGTPFWMAPEVIEE  203 (502)
T ss_pred             HHHHHHHHHHHhhcccccEEEcccchhhhhhccccchhhhhHH-hhCccccCcccccHHHHHH
Confidence            4689999999999999999999999999999999876654433 3455567899999987654

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=98.27  E-value=5.3e-07  Score=62.26  Aligned_cols=38  Identities=26%  Similarity=0.545  Sum_probs=33.9

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.+||..|++|+|++|.||+++.+..++|+|||.+.+.
T Consensus       155 l~~lH~~GI~HrDlkp~NILv~~~~~v~LIDfg~~~~~  192 (239)
T PRK01723        155 IARFHDAGVYHADLNAHNILLDPDGKFWLIDFDRGELR  192 (239)
T ss_pred             HHHHHHCCCCCCCCCchhEEEcCCCCEEEEECCCcccC
Confidence            35799999999999999999988888999999987654

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=98.27  E-value=4.6e-07  Score=62.08  Aligned_cols=38  Identities=32%  Similarity=0.690  Sum_probs=34.3

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|||..+++|+++++.||+++.++.++++|||++...
T Consensus       116 l~~lh~~~i~h~dl~p~nili~~~~~~~l~d~g~~~~~  153 (280)
T cd06611         116 LNFLHSHKVIHRDLKAGNILLTLDGDVKLADFGVSAKN  153 (280)
T ss_pred             HHHHHHCCcccCCCChhhEEECCCCCEEEccCccchhh
Confidence            46899999999999999999999999999999987554

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>KOG1094|consensus

Probab=98.26  E-value=3.3e-07  Score=70.74  Aligned_cols=61  Identities=23%  Similarity=0.363  Sum_probs=54.4

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |+||.+.+++||++.+.|||++....+|++|||+++-......+...+.+-.|+.|+++|.
T Consensus       650 maYLes~nfVHrd~a~rNcLv~~e~~iKiadfgmsR~lysg~yy~vqgr~vlpiRwmawEs  710 (807)
T KOG1094|consen  650 MAYLESLNFVHRDLATRNCLVDGEFTIKIADFGMSRNLYSGDYYRVQGRAVLPIRWMAWES  710 (807)
T ss_pred             HHHHHhhchhhccccccceeecCcccEEecCcccccccccCCceeeecceeeeeeehhHHH
Confidence            5789999999999999999999999999999999998877777778888888998887765

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=98.26  E-value=5e-07  Score=61.81  Aligned_cols=39  Identities=33%  Similarity=0.664  Sum_probs=34.8

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||+.+++|+++++.||++..++.++++|||++....
T Consensus       113 l~~lH~~~i~h~dl~p~ni~~~~~~~~~l~d~g~~~~~~  151 (284)
T cd07836         113 IAFCHENRVLHRDLKPQNLLINKRGELKLADFGLARAFG  151 (284)
T ss_pred             HHHHHHCCeeeCCCCHHHEEECCCCcEEEeecchhhhhc
Confidence            468999999999999999999998999999999886543

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>KOG0200|consensus

Probab=98.26  E-value=4.4e-07  Score=70.02  Aligned_cols=61  Identities=30%  Similarity=0.440  Sum_probs=46.5

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCC-CCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKP-SSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~-~~~~~~~p~e~   61 (93)
                      |.||++.+++||||-.+||++..+..++++|||+|+.......+...... ..|+.+++||.
T Consensus       431 Me~L~~~~~vHRDLAaRNVLi~~~~~~kIaDFGlar~~~~~~~y~~~~~~~~LP~kWmApEs  492 (609)
T KOG0200|consen  431 MEYLASVPCVHRDLAARNVLITKNKVIKIADFGLARDHYNKDYYRTKSSAGTLPVKWMAPES  492 (609)
T ss_pred             HHHHhhCCccchhhhhhhEEecCCCEEEEccccceeccCCCCceEecCCCCccceeecCHHH
Confidence            46899999999999999999999999999999999865544444322222 16776777754

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=98.26  E-value=7e-07  Score=60.82  Aligned_cols=38  Identities=34%  Similarity=0.650  Sum_probs=33.0

Q ss_pred             CccchhCCccccCCCCCceEEec-CCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEK-NNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~-~~~~kl~dfgla~~~   38 (93)
                      |.|||..+++|+++++.||+++. ...++|+|||++...
T Consensus       121 l~~lH~~~i~h~dl~p~nil~~~~~~~~~l~dfg~~~~~  159 (268)
T cd06624         121 LKYLHDNQIVHRDIKGDNVLVNTYSGVVKISDFGTSKRL  159 (268)
T ss_pred             HHHHHHCCEeecCCCHHHEEEcCCCCeEEEecchhheec
Confidence            46899999999999999999975 568999999987643

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=98.26  E-value=6.1e-07  Score=61.46  Aligned_cols=38  Identities=34%  Similarity=0.730  Sum_probs=34.5

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|||..+++|+++++.||+++.++.++|+|||++...
T Consensus       112 L~~lH~~~~~H~dl~p~nil~~~~~~~~l~df~~~~~~  149 (283)
T cd07835         112 IAYCHSHRVLHRDLKPQNLLIDREGALKLADFGLARAF  149 (283)
T ss_pred             HHHHHHCCeeCCCCCHHHEEEcCCCcEEEeeccccccc
Confidence            46899999999999999999999999999999998644

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=98.26  E-value=9.2e-07  Score=61.60  Aligned_cols=38  Identities=24%  Similarity=0.588  Sum_probs=34.1

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|||..+++|++|++.||+++.++.+++.||+.+...
T Consensus       114 L~~LH~~~ivH~dlk~~Nili~~~~~~kl~d~~~~~~~  151 (314)
T cd08216         114 LDYIHSKGFIHRSVKASHILLSGDGKVVLSGLRYSVSM  151 (314)
T ss_pred             HHHHHHCCeecCCCCcceEEEecCCceEEecCccceee
Confidence            46899999999999999999998899999999987543

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=98.25  E-value=5.1e-07  Score=64.23  Aligned_cols=38  Identities=39%  Similarity=0.790  Sum_probs=34.6

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|||+.+++|+++++.||+++.++.++|+|||++...
T Consensus       131 L~~LH~~gi~H~dlkp~Nill~~~~~~kL~dfg~~~~~  168 (343)
T cd07851         131 LKYIHSAGIIHRDLKPSNIAVNEDCELKILDFGLARHT  168 (343)
T ss_pred             HHHHHHCCeecCCCCHHHeEECCCCCEEEccccccccc
Confidence            46899999999999999999999999999999998654

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=98.25  E-value=5.7e-07  Score=61.21  Aligned_cols=59  Identities=31%  Similarity=0.441  Sum_probs=42.1

Q ss_pred             Cccchh-CCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHA-RGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs-~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||. .+++|+++++.||++...+.++|+|||++.......   ......++..|.+|+.-
T Consensus       126 l~~lh~~~~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~---~~~~~~~~~~~~~Pe~~  185 (269)
T cd08528         126 LRYLHKEKRIVHRDLTPNNIMLGEDDKVTITDFGLAKQKQPES---KLTSVVGTILYSCPEIV  185 (269)
T ss_pred             HHHhccCCceeecCCCHHHEEECCCCcEEEecccceeeccccc---ccccccCcccCcChhhh
Confidence            368896 689999999999999999999999999986544322   11222345556666543

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>KOG3653|consensus

Probab=98.25  E-value=8.6e-07  Score=66.70  Aligned_cols=57  Identities=26%  Similarity=0.240  Sum_probs=41.5

Q ss_pred             CccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhhhh
Q psy700            8 GILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEEEK   64 (93)
Q Consensus         8 ~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~~~   64 (93)
                      .|+|||+++.|||+..+..+.|+|||+|..+.........-.--++..|++||-.+.
T Consensus       336 ~IaHRDlkSkNVLvK~DlTccIaDFGLAl~~~p~~~~~d~~~qVGT~RYMAPEvLEg  392 (534)
T KOG3653|consen  336 PIAHRDLKSKNVLVKNDLTCCIADFGLALRLEPGKPQGDTHGQVGTRRYMAPEVLEG  392 (534)
T ss_pred             ccccccccccceEEccCCcEEeeccceeEEecCCCCCcchhhhhhhhhhcCHHHHhh
Confidence            599999999999999999999999999977654443332222335666666665543

>KOG4250|consensus

Probab=98.25  E-value=5.1e-07  Score=70.27  Aligned_cols=59  Identities=24%  Similarity=0.197  Sum_probs=42.8

Q ss_pred             CccchhCCccccCCCCCceEEecC----CcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKN----NKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~----~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||.++|+||||||.||++-..    ...||+|||.|+-.....  ...+.+++.-|++|+..
T Consensus       133 l~~LrEn~IvHRDlKP~NIvl~~Gedgq~IyKLtDfG~Arel~d~s--~~~S~vGT~~YLhPel~  195 (732)
T KOG4250|consen  133 LRHLRENGIVHRDLKPGNIVLQIGEDGQSIYKLTDFGAARELDDNS--LFTSLVGTEEYLHPELY  195 (732)
T ss_pred             HHHHHHcCceeccCCCCcEEEeecCCCceEEeeecccccccCCCCC--eeeeecCchhhcChHHH
Confidence            468999999999999999998532    246999999998765444  33444555556666543

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=98.24  E-value=6.3e-07  Score=61.22  Aligned_cols=39  Identities=33%  Similarity=0.698  Sum_probs=35.1

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      +.|||..+++|+++++.||+++.++.++++|||+++...
T Consensus       111 l~~lh~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~  149 (274)
T cd06609         111 LEYLHEEGKIHRDIKAANILLSEEGDVKLADFGVSGQLT  149 (274)
T ss_pred             HHHHHhCCcccCCCCHHHEEECCCCCEEEcccccceeec
Confidence            368999999999999999999999999999999986654

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=98.24  E-value=2.8e-07  Score=62.36  Aligned_cols=38  Identities=32%  Similarity=0.680  Sum_probs=34.2

Q ss_pred             Cccchh-CCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHA-RGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs-~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|+|+ .+++|+++++.||+++..+.++|+|||++...
T Consensus       113 l~~lH~~~~i~H~dl~~~ni~~~~~~~~~l~d~g~~~~~  151 (265)
T cd06605         113 LTYLHEKHKIIHRDVKPSNILVNSRGQIKLCDFGVSGQL  151 (265)
T ss_pred             HHHHcCCCCeecCCCCHHHEEECCCCCEEEeecccchhh
Confidence            468999 99999999999999999999999999987544

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=98.24  E-value=6.5e-07  Score=60.84  Aligned_cols=39  Identities=44%  Similarity=0.856  Sum_probs=34.9

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||..+++|+++++.||+++.++.++++|||++....
T Consensus       115 l~~Lh~~~~~H~dl~~~ni~i~~~~~~~l~df~~~~~~~  153 (280)
T cd05581         115 LEYLHSKGIIHRDLKPENILLDKDMHIKITDFGTAKVLD  153 (280)
T ss_pred             HHHHHHCCeeecCCCHHHeEECCCCCEEecCCccccccC
Confidence            468999999999999999999999999999999876543

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=98.24  E-value=8.7e-07  Score=60.51  Aligned_cols=39  Identities=38%  Similarity=0.757  Sum_probs=35.0

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||..+++|+++++.||+++.++.++|+|||++....
T Consensus       120 l~~LH~~~i~h~~l~~~nili~~~~~~~l~dfg~~~~~~  158 (287)
T cd07838         120 VDFLHSHRIVHRDLKPQNILVTSDGQVKIADFGLARIYS  158 (287)
T ss_pred             HHHHHHCCeeeccCChhhEEEccCCCEEEeccCcceecc
Confidence            468999999999999999999999999999999876543

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>KOG0668|consensus

Probab=98.23  E-value=5.6e-07  Score=63.17  Aligned_cols=41  Identities=34%  Similarity=0.703  Sum_probs=34.7

Q ss_pred             CccchhCCccccCCCCCceEEecC-CcEEEeecccccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKN-NKVVITDFGLFNFSKLY   41 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~-~~~kl~dfgla~~~~~~   41 (93)
                      |.|||+.||+||+++|.|++++.. ..++|+|||+|-+--+.
T Consensus       145 LdyCHS~GImHRDVKPhNvmIdh~~rkLrlIDWGLAEFYHp~  186 (338)
T KOG0668|consen  145 LDYCHSMGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPG  186 (338)
T ss_pred             HhHHHhcCcccccCCcceeeechhhceeeeeecchHhhcCCC
Confidence            469999999999999999999854 56899999999765433

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=98.23  E-value=6.5e-07  Score=63.16  Aligned_cols=39  Identities=36%  Similarity=0.542  Sum_probs=34.9

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||..+++|++|++.||++...+.++++|||++....
T Consensus       132 L~~LH~~~i~H~dl~~~nill~~~~~~kl~dfg~~~~~~  170 (335)
T PTZ00024        132 LNVLHKWYFMHRDLSPANIFINSKGICKIADFGLARRYG  170 (335)
T ss_pred             HHHHHhCCeecccccHHHeEECCCCCEEECCccceeecc
Confidence            468999999999999999999999999999999886543

>KOG1164|consensus

Probab=98.23  E-value=8.7e-07  Score=63.15  Aligned_cols=72  Identities=22%  Similarity=0.356  Sum_probs=46.5

Q ss_pred             CccchhCCccccCCCCCceEEecC-----CcEEEeeccccccccc--cCC---C--CC-CCCCCCCCCCChhhhhhhhhc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKN-----NKVVITDFGLFNFSKL--YNS---Y--TS-NEKPSSPLGEGKEEEEEKEEE   67 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~-----~~~kl~dfgla~~~~~--~~~---~--~~-~~~~~~~~~~~p~e~~~~~~~   67 (93)
                      |.++|+.|++|||++|.|+++...     ..+.+.|||+++....  ...   .  .. ...+.++..|++...-....-
T Consensus       135 l~~lH~~G~iHRDiKp~N~~~g~~~~~~~~~~~llDfGlar~~~~~~~~~~~~~~~r~~~~~~rGT~ry~S~~~H~~~e~  214 (322)
T KOG1164|consen  135 LEDLHSKGFIHRDIKPENFVVGQSSRSEVRTLYLLDFGLARRFKYVGDSGGNLRPPRPQKGLFRGTLRYASINVHLGIEQ  214 (322)
T ss_pred             HHHHHhcCcccCCcCHHHeeecCCCCcccceEEEEecCCCccccccCCCCcccccCCCCccCCCCccccccHHHhCCCcc
Confidence            357999999999999999999854     3588999999983221  110   0  11 123335667777665544444


Q ss_pred             cchhh
Q psy700           68 GEEED   72 (93)
Q Consensus        68 ~~~~~   72 (93)
                      +-++|
T Consensus       215 ~r~DD  219 (322)
T KOG1164|consen  215 GRRDD  219 (322)
T ss_pred             CCchh
Confidence            44444

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=98.23  E-value=5.8e-07  Score=60.60  Aligned_cols=59  Identities=27%  Similarity=0.437  Sum_probs=42.9

Q ss_pred             Cccchh-CCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHA-RGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs-~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      +.|+|. .+++|+++++.||+++.++.++|+|||++..........  ........|.||+.
T Consensus       112 l~~lh~~~~~~H~~l~~~ni~~~~~~~~~l~df~~~~~~~~~~~~~--~~~~~~~~y~~pE~  171 (264)
T cd06623         112 LDYLHTKRHIIHRDIKPSNLLINSKGEVKIADFGISKVLENTLDQC--NTFVGTVTYMSPER  171 (264)
T ss_pred             HHHHhccCCCccCCCCHHHEEECCCCCEEEccCccceecccCCCcc--cceeecccccCHhh
Confidence            468999 999999999999999999999999999876553222211  12234455666654

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=98.22  E-value=6.8e-07  Score=60.33  Aligned_cols=38  Identities=26%  Similarity=0.536  Sum_probs=33.9

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|+|..+++|++++|.||+++..+.+++.|||++...
T Consensus        98 l~~lH~~~i~H~dlkp~Nil~~~~~~~~l~df~~~~~~  135 (237)
T cd05576          98 LDALHREGIVCRDLNPNNILLDDRGHIQLTYFSRWSEV  135 (237)
T ss_pred             HHHHHhCCeeccCCCHHHEEEcCCCCEEEecccchhcc
Confidence            46899999999999999999999999999999976543

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>PHA02988 hypothetical protein; Provisional

Probab=98.22  E-value=8.3e-07  Score=61.67  Aligned_cols=38  Identities=24%  Similarity=0.201  Sum_probs=33.5

Q ss_pred             Cccchh-CCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHA-RGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs-~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|+|. .+++|+++++.||+++.++.++++|||+++..
T Consensus       135 l~~lH~~~~~~Hrdlkp~nill~~~~~~kl~dfg~~~~~  173 (283)
T PHA02988        135 LYNLYKYTNKPYKNLTSVSFLVTENYKLKIICHGLEKIL  173 (283)
T ss_pred             HHHHHhcCCCCCCcCChhhEEECCCCcEEEcccchHhhh
Confidence            468897 48999999999999999999999999998754

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=98.22  E-value=7.7e-07  Score=62.27  Aligned_cols=38  Identities=32%  Similarity=0.668  Sum_probs=34.3

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|||..+++|++|++.||+++..+.++++|||++...
T Consensus       128 l~~LH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~  165 (308)
T cd06634         128 LAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSASIM  165 (308)
T ss_pred             HHHHHhCCcccCCCCHHhEEECCCCcEEECCcccceee
Confidence            46899999999999999999998899999999987654

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=98.22  E-value=9.2e-07  Score=60.75  Aligned_cols=39  Identities=26%  Similarity=0.633  Sum_probs=34.4

Q ss_pred             CccchhCCccccCCCCCceEEecCC-cEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNN-KVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~-~~kl~dfgla~~~~   39 (93)
                      |.|||..+++|+++++.||++...+ .++++|||++....
T Consensus       122 l~~lH~~~i~H~dl~p~nil~~~~~~~~~l~dfg~~~~~~  161 (267)
T PHA03390        122 LNDLHKHNIIHNDIKLENVLYDRAKDRIYLCDYGLCKIIG  161 (267)
T ss_pred             HHHHHhCCeeeCCCCHHHEEEeCCCCeEEEecCccceecC
Confidence            4689999999999999999999887 89999999876543

>KOG0196|consensus

Probab=98.22  E-value=5.5e-07  Score=71.20  Aligned_cols=62  Identities=24%  Similarity=0.330  Sum_probs=46.6

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccC-CCCCCCCCCCCC-CCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYN-SYTSNEKPSSPL-GEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~-~~~~~~~~~~~~-~~~p~e~~   62 (93)
                      |.||...+++||||..+|||++.+..||++|||+++..-... ......+...|+ |.+|+..+
T Consensus       744 MkYLsdm~YVHRDLAARNILVNsnLvCKVsDFGLSRvledd~~~~ytt~GGKIPiRWTAPEAIa  807 (996)
T KOG0196|consen  744 MKYLSDMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEAAYTTLGGKIPIRWTAPEAIA  807 (996)
T ss_pred             hHHHhhcCchhhhhhhhheeeccceEEEeccccceeecccCCCccccccCCccceeecChhHhh
Confidence            578889999999999999999999999999999998764333 333344445677 45555443

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=98.22  E-value=5.6e-07  Score=60.17  Aligned_cols=39  Identities=44%  Similarity=0.802  Sum_probs=34.9

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||..+++|+++++.||+++....++++|||++....
T Consensus       116 l~~lh~~~~~H~dl~~~nil~~~~~~~~l~d~~~~~~~~  154 (258)
T cd08215         116 LKYLHSRKILHRDIKPQNIFLTSNGLVKLGDFGISKVLS  154 (258)
T ss_pred             HHHHHhCCEecccCChHHeEEcCCCcEEECCccceeecc
Confidence            468999999999999999999998999999999886544

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>KOG0608|consensus

Probab=98.21  E-value=6e-07  Score=70.09  Aligned_cols=35  Identities=37%  Similarity=0.807  Sum_probs=32.4

Q ss_pred             ccchhCCccccCCCCCceEEecCCcEEEeeccccc
Q psy700            2 GYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFN   36 (93)
Q Consensus         2 ~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~   36 (93)
                      .++|.-|+|||||+|.|||++.++.+||.||||+.
T Consensus       743 esVHkmGFIHRDiKPDNILIDrdGHIKLTDFGLCT  777 (1034)
T KOG0608|consen  743 ESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCT  777 (1034)
T ss_pred             HHHHhccceecccCccceEEccCCceeeeeccccc
Confidence            46788999999999999999999999999999864

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=98.21  E-value=1.1e-06  Score=60.32  Aligned_cols=59  Identities=20%  Similarity=0.289  Sum_probs=42.4

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|+|+.+++|+++++.||+++..+.++++|||++........  ......+..+|.||+.
T Consensus       114 l~~lh~~~ivH~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~y~apE~  172 (277)
T cd06640         114 LDYLHSEKKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQI--KRNTFVGTPFWMAPEV  172 (277)
T ss_pred             HHHHHhCCccCcCCChhhEEEcCCCCEEEcccccceeccCCcc--ccccccCcccccCHhH
Confidence            3689999999999999999999989999999999865432221  1112233455556654

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=98.21  E-value=7.8e-07  Score=61.67  Aligned_cols=38  Identities=32%  Similarity=0.704  Sum_probs=33.7

Q ss_pred             Cccchh-CCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHA-RGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs-~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|||+ .+++|++|++.||+++.++.++|+|||++...
T Consensus       127 l~~lH~~~~i~H~dl~p~nill~~~~~~kL~dfg~~~~~  165 (296)
T cd06618         127 LHYLKEKHGVIHRDVKPSNILLDASGNVKLCDFGISGRL  165 (296)
T ss_pred             HHHHHhhCCEecCCCcHHHEEEcCCCCEEECccccchhc
Confidence            468997 59999999999999998899999999997644

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=98.21  E-value=7.6e-07  Score=60.25  Aligned_cols=39  Identities=38%  Similarity=0.789  Sum_probs=34.9

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||..+++|+++++.||+++..+.++++|||++....
T Consensus       113 l~~lh~~~i~h~dl~~~nil~~~~~~~~l~d~~~~~~~~  151 (258)
T cd05578         113 LEYLHSKGIIHRDIKPDNILLDEQGHVHITDFNIATKVT  151 (258)
T ss_pred             HHHHHhCCeeccCCCHHHeEEcCCCCEEEeecccccccC
Confidence            468999999999999999999999999999999876543

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=98.21  E-value=7.8e-07  Score=60.29  Aligned_cols=39  Identities=33%  Similarity=0.664  Sum_probs=33.4

Q ss_pred             CccchhCCccccCCCCCceEEecCC-cEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNN-KVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~-~~kl~dfgla~~~~   39 (93)
                      |.|||.++++|++|++.||+++..+ .++|+|||++....
T Consensus       116 l~~LH~~~i~H~~i~~~nil~~~~~~~~~l~dfg~~~~~~  155 (268)
T cd06630         116 LSYLHENQIIHRDVKGANLLIDSTGQRLRIADFGAAARLA  155 (268)
T ss_pred             HHHHHhCCeecCCCCHHHEEEcCCCCEEEEcccccccccc
Confidence            4689999999999999999997654 58999999986554

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=98.20  E-value=1.4e-06  Score=61.17  Aligned_cols=38  Identities=32%  Similarity=0.742  Sum_probs=34.1

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|||..+++|+++++.||+++..+.++++|||++...
T Consensus       138 l~~lH~~~i~H~dL~p~Nil~~~~~~~kl~dfg~~~~~  175 (317)
T cd06635         138 LAYLHSHNMIHRDIKAGNILLTEPGQVKLADFGSASIA  175 (317)
T ss_pred             HHHHHHCCcccCCCCcccEEECCCCCEEEecCCCcccc
Confidence            46899999999999999999998899999999987543

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=98.20  E-value=8.9e-07  Score=60.85  Aligned_cols=38  Identities=29%  Similarity=0.633  Sum_probs=33.3

Q ss_pred             Cccchh-CCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHA-RGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs-~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|||. .+++|++|++.||+++.++.++++|||++...
T Consensus       115 l~~LH~~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~  153 (286)
T cd06622         115 LKFLKEEHNIIHRDVKPTNVLVNGNGQVKLCDFGVSGNL  153 (286)
T ss_pred             HHHHHhcCCEeeCCCCHHHEEECCCCCEEEeecCCcccc
Confidence            358996 59999999999999999899999999987644

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=98.20  E-value=7.8e-07  Score=61.98  Aligned_cols=59  Identities=24%  Similarity=0.372  Sum_probs=42.0

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||..+++|+++++.||+++.++.++++|||++........  ......++.+|.+|+.
T Consensus       129 l~~lH~~givH~dl~p~Nilv~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~y~~pE~  187 (292)
T cd06657         129 LSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVP--RRKSLVGTPYWMAPEL  187 (292)
T ss_pred             HHHHHHCCeecCCCCHHHEEECCCCCEEEcccccceecccccc--cccccccCccccCHHH
Confidence            4689999999999999999999888999999998754432111  1112233455666664

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=98.19  E-value=1.7e-06  Score=57.96  Aligned_cols=59  Identities=29%  Similarity=0.410  Sum_probs=42.2

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      +.|+|..+++|+++++.||+++..+.++++|||++........  ..........|.+|+.
T Consensus       106 l~~lh~~~~~H~~l~p~ni~~~~~~~~~l~d~~~~~~~~~~~~--~~~~~~~~~~~~~Pe~  164 (250)
T cd05123         106 LEYLHSLGIIYRDLKPENILLDADGHIKLTDFGLAKELSSEGS--RTNTFCGTPEYLAPEV  164 (250)
T ss_pred             HHHHHHCCceecCCCcceEEEcCCCcEEEeecCcceecccCCC--cccCCcCCccccChHH
Confidence            3689999999999999999999999999999998765432211  1122233445555554

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>KOG1989|consensus

Probab=98.18  E-value=7.2e-07  Score=70.12  Aligned_cols=65  Identities=23%  Similarity=0.305  Sum_probs=47.4

Q ss_pred             CccchhCC--ccccCCCCCceEEecCCcEEEeeccccccccccCCCC--------CCCCCCCCCCCChhhhhhhh
Q psy700            1 MGYLHARG--ILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYT--------SNEKPSSPLGEGKEEEEEKE   65 (93)
Q Consensus         1 l~~lhs~~--iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~--------~~~~~~~~~~~~p~e~~~~~   65 (93)
                      +.+||...  +||||||..|||++.++.+||||||.+..........        ......++.|.+|++.+...
T Consensus       157 Va~mH~~~pPiIHRDLKiENvLls~~g~~KLCDFGSatt~~~~~~~~~e~~~ve~eI~k~TTp~YRsPEMIDlys  231 (738)
T KOG1989|consen  157 VAAMHYLKPPIIHRDLKIENVLLSADGNYKLCDFGSATTKILSPTSAQEVNYVEEEIEKYTTPQYRSPEMIDLYS  231 (738)
T ss_pred             HHHHhcCCCccchhhhhhhheEEcCCCCEEeCcccccccccCCCccHHHHHHHHHHHHhhCCccccChHHHhhhc
Confidence            35789875  9999999999999999999999999876433332110        12344567788888877544

>KOG1345|consensus

Probab=98.18  E-value=1.1e-06  Score=62.92  Aligned_cols=38  Identities=34%  Similarity=0.667  Sum_probs=32.6

Q ss_pred             CccchhCCccccCCCCCceEEe--cCCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIE--KNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~--~~~~~kl~dfgla~~~   38 (93)
                      +.|||+.+++||||+..|||+.  ...++||+|||+++..
T Consensus       134 i~fMHsknlVHRdlK~eNiLif~~df~rvKlcDFG~t~k~  173 (378)
T KOG1345|consen  134 IEFMHSKNLVHRDLKAENILIFDADFYRVKLCDFGLTRKV  173 (378)
T ss_pred             HHHhhccchhhcccccceEEEecCCccEEEeeeccccccc
Confidence            4699999999999999999985  3458999999987543

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=98.18  E-value=1e-06  Score=60.63  Aligned_cols=38  Identities=37%  Similarity=0.768  Sum_probs=34.1

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|||..+++|+++++.||+++.++.++++|||++...
T Consensus       129 L~~lH~~gi~H~dl~p~ni~i~~~~~~~l~d~~~~~~~  166 (286)
T cd06614         129 LEYLHSQNVIHRDIKSDNILLSKDGSVKLADFGFAAQL  166 (286)
T ss_pred             HHHHHhCCeeeCCCChhhEEEcCCCCEEECccchhhhh
Confidence            46899999999999999999998899999999987543

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=98.18  E-value=9.1e-07  Score=61.51  Aligned_cols=39  Identities=33%  Similarity=0.688  Sum_probs=34.6

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||+++++|+++++.||++...+.++|+|||++....
T Consensus       128 l~~LH~~gi~H~dL~p~Nili~~~~~~kL~dfg~~~~~~  166 (293)
T cd06647         128 LEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQIT  166 (293)
T ss_pred             HHHHHhCCEeeccCCHHHEEEcCCCCEEEccCcceeccc
Confidence            468999999999999999999988999999999875443

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=98.18  E-value=1.5e-06  Score=61.00  Aligned_cols=37  Identities=32%  Similarity=0.714  Sum_probs=33.6

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNF   37 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~   37 (93)
                      +.|||..+++|+++++.||++...+.++|+|||++..
T Consensus       134 l~~LH~~gi~H~dl~p~nili~~~~~~kL~dfg~~~~  170 (313)
T cd06633         134 LAYLHSHNMIHRDIKAGNILLTEPGQVKLADFGSASK  170 (313)
T ss_pred             HHHHHHCCeecCCCChhhEEECCCCCEEEeecCCCcc
Confidence            4689999999999999999999888999999998754

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=98.18  E-value=1.3e-06  Score=59.44  Aligned_cols=37  Identities=19%  Similarity=0.487  Sum_probs=31.1

Q ss_pred             CccchhCCccccCCCCCceEEecCCc--------EEEeecccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNK--------VVITDFGLFNF   37 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~--------~kl~dfgla~~   37 (93)
                      |.|||..+++|+++++.||+++.+..        ++++|||++..
T Consensus       113 l~~lH~~~iiH~dlkp~nili~~~~~~~~~~~~~~~l~d~g~~~~  157 (258)
T cd05078         113 LHFLEDKGLTHGNVCAKNVLLIREEDRKTGNPPFIKLSDPGISIT  157 (258)
T ss_pred             HHHHHHCCeecCCCccceEEEecccccccCCCceEEecccccccc
Confidence            46899999999999999999976543        58999998754

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=98.17  E-value=1.8e-06  Score=60.23  Aligned_cols=38  Identities=32%  Similarity=0.667  Sum_probs=34.5

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|||+.+++|+++++.||+++.++.++++|||++...
T Consensus       128 L~~LH~~~i~H~dl~p~nIl~~~~~~~kL~dfg~~~~~  165 (307)
T cd06607         128 LAYLHSHERIHRDIKAGNILLTEPGTVKLADFGSASLV  165 (307)
T ss_pred             HHHHHHCCceecCCCcccEEECCCCCEEEeecCcceec
Confidence            46899999999999999999999999999999987654

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=98.17  E-value=1.3e-06  Score=61.07  Aligned_cols=38  Identities=29%  Similarity=0.630  Sum_probs=33.5

Q ss_pred             Cccchh-CCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHA-RGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs-~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|||+ .+++|+++++.||+++.++.++++|||++...
T Consensus       112 l~~lH~~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~  150 (308)
T cd06615         112 LTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQL  150 (308)
T ss_pred             HHHHHhhCCEEECCCChHHEEEecCCcEEEccCCCcccc
Confidence            468997 58999999999999999899999999987543

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=98.16  E-value=1.4e-06  Score=60.08  Aligned_cols=38  Identities=37%  Similarity=0.754  Sum_probs=34.2

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|||..+++|+++++.||+++....++++|||++...
T Consensus       118 L~~lH~~~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~  155 (287)
T cd06621         118 LSYLHSRKIIHRDIKPSNILLTRKGQVKLCDFGVSGEL  155 (287)
T ss_pred             HHHHHHCCcccCCCCHHHEEEecCCeEEEeeccccccc
Confidence            46899999999999999999998889999999997543

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=98.13  E-value=1.6e-06  Score=59.51  Aligned_cols=59  Identities=20%  Similarity=0.296  Sum_probs=42.2

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      +.|||..+++|+++++.||+++..+.++++|||++........  ......+..+|.||+.
T Consensus       114 l~~lh~~~i~h~dl~p~Ni~i~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~y~~PE~  172 (277)
T cd06641         114 LDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQI--KRNTFVGTPFWMAPEV  172 (277)
T ss_pred             HHHHccCCeecCCCCHHhEEECCCCCEEEeecccceecccchh--hhccccCCccccChhh
Confidence            3589999999999999999999889999999998765432211  1111233455666654

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>KOG4278|consensus

Probab=98.12  E-value=7.1e-07  Score=69.75  Aligned_cols=60  Identities=28%  Similarity=0.530  Sum_probs=48.7

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.||..+++|||||-.+|||+..+..+|++|||++++..- ..+..-.+..+||-|.+|+.
T Consensus       378 MeYLEkknFIHRDLAARNCLVgEnhiVKvADFGLsRlMtg-DTYTAHAGAKFPIKWTAPEs  437 (1157)
T KOG4278|consen  378 MEYLEKKNFIHRDLAARNCLVGENHIVKVADFGLSRLMTG-DTYTAHAGAKFPIKWTAPES  437 (1157)
T ss_pred             HHHHHHhhhhhhhhhhhhccccccceEEeeccchhhhhcC-CceecccCccCcccccCccc
Confidence            4688889999999999999999999999999999998774 44555666778885555543

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=98.11  E-value=1.7e-06  Score=61.54  Aligned_cols=38  Identities=39%  Similarity=0.760  Sum_probs=32.7

Q ss_pred             CccchhCCccccCCCCCceEEec-CCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEK-NNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~-~~~~kl~dfgla~~~   38 (93)
                      |.|||..+++|+++++.||+++. +..++++|||++...
T Consensus       127 L~~LH~~givH~dikp~Nili~~~~~~~kl~dfg~~~~~  165 (342)
T cd07854         127 LKYIHSANVLHRDLKPANVFINTEDLVLKIGDFGLARIV  165 (342)
T ss_pred             HHHHHhCCcccCCCCHHHEEEcCCCceEEECCcccceec
Confidence            46899999999999999999974 456899999998654

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>KOG0695|consensus

Probab=98.11  E-value=2.1e-06  Score=63.17  Aligned_cols=60  Identities=22%  Similarity=0.357  Sum_probs=46.3

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||.+|||+|+|+..|++++..+.+||.|+|+.+-......  .+.+++++..|.+|+..
T Consensus       364 l~flh~rgiiyrdlkldnvlldaeghikltdygmcke~l~~gd--~tstfcgtpnyiapeil  423 (593)
T KOG0695|consen  364 LNFLHERGIIYRDLKLDNVLLDAEGHIKLTDYGMCKEGLGPGD--TTSTFCGTPNYIAPEIL  423 (593)
T ss_pred             HHHHhhcCeeeeeccccceEEccCCceeecccchhhcCCCCCc--ccccccCCCcccchhhh
Confidence            4689999999999999999999999999999999865443332  34455666666666543

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=98.11  E-value=1.9e-06  Score=57.87  Aligned_cols=39  Identities=41%  Similarity=0.669  Sum_probs=34.6

Q ss_pred             Cccch-----hCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLH-----ARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lh-----s~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|+|     ..+++|+++++.||+++..+.++++|||++....
T Consensus       118 l~~lH~~~~~~~~i~h~dl~p~nili~~~~~~kl~d~g~~~~~~  161 (265)
T cd08217         118 LYECHNRSDPGNTVLHRDLKPANIFLDANNNVKLGDFGLAKILG  161 (265)
T ss_pred             HHHHhcCccccCcceecCCCHHHEEEecCCCEEEeccccccccc
Confidence            35788     8899999999999999999999999999987654

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=98.10  E-value=1.8e-06  Score=61.21  Aligned_cols=37  Identities=43%  Similarity=0.844  Sum_probs=33.9

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNF   37 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~   37 (93)
                      |.|||..+++|+++++.||+++.++.++++|||++..
T Consensus       121 L~~LH~~~iiH~dl~p~Nili~~~~~~~l~dfg~~~~  157 (328)
T cd07856         121 LKYVHSAGVVHRDLKPSNILINENCDLKICDFGLARI  157 (328)
T ss_pred             HHHHHhCCcccCCCCHHHEeECCCCCEEeCccccccc
Confidence            4689999999999999999999889999999998764

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=98.09  E-value=1.4e-06  Score=58.74  Aligned_cols=38  Identities=39%  Similarity=0.748  Sum_probs=34.3

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|||+++++|+++++.||+++.+..+++.|||++...
T Consensus       114 l~~lh~~~i~h~~l~~~nil~~~~~~~~l~d~~~~~~~  151 (256)
T cd08218         114 LKHVHDRKILHRDIKSQNIFLTKDGTIKLGDFGIARVL  151 (256)
T ss_pred             HHHHHhCCEecCCCCHHHEEEcCCCCEEEeeccceeec
Confidence            46899999999999999999998899999999988654

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>KOG4717|consensus

Probab=98.09  E-value=1.8e-06  Score=66.28  Aligned_cols=62  Identities=26%  Similarity=0.302  Sum_probs=45.7

Q ss_pred             CccchhCCccccCCCCCceEEe-cCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIE-KNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEEEKE   65 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~-~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~~~~   65 (93)
                      +.|||...++||+|+|.|+++. .-+.+||.|||++.-+.+..   ...+.++...|.+|+....+
T Consensus       131 I~YCHqLHVVHRDLKPENVVFFEKlGlVKLTDFGFSNkf~PG~---kL~TsCGSLAYSAPEILLGD  193 (864)
T KOG4717|consen  131 ISYCHQLHVVHRDLKPENVVFFEKLGLVKLTDFGFSNKFQPGK---KLTTSCGSLAYSAPEILLGD  193 (864)
T ss_pred             HHHHhhhhhhcccCCcceeEEeeecCceEeeeccccccCCCcc---hhhcccchhhccCchhhhcC
Confidence            3689999999999999999776 56789999999975544333   23444666777777665443

>KOG4279|consensus

Probab=98.08  E-value=2.4e-06  Score=67.53  Aligned_cols=42  Identities=31%  Similarity=0.547  Sum_probs=35.4

Q ss_pred             CccchhCCccccCCCCCceEEe-cCCcEEEeeccccccccccC
Q psy700            1 MGYLHARGILHKDLKSKNIFIE-KNNKVVITDFGLFNFSKLYN   42 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~-~~~~~kl~dfgla~~~~~~~   42 (93)
                      |.|||.+.|+||||+-.|++++ ..+-+|+.|||.++......
T Consensus       688 LkYLHen~IVHRDIKGDNVLvNTySGvlKISDFGTsKRLAgin  730 (1226)
T KOG4279|consen  688 LKYLHENKIVHRDIKGDNVLVNTYSGVLKISDFGTSKRLAGIN  730 (1226)
T ss_pred             hhhhhhcceeeccccCCcEEEeeccceEEecccccchhhccCC
Confidence            5799999999999999999997 46778999999887654333

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=98.07  E-value=2.5e-06  Score=56.65  Aligned_cols=37  Identities=27%  Similarity=0.419  Sum_probs=32.9

Q ss_pred             ccchhCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            2 GYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         2 ~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      .++|..+++|+|++|.||+++.+..++++|||++...
T Consensus       139 ~~lh~~gi~H~Dl~p~Nill~~~~~~~liDfg~~~~~  175 (198)
T cd05144         139 VKAYKHGIIHGDLSEFNILVDDDEKIYIIDWPQMVST  175 (198)
T ss_pred             HHHHHCCCCcCCCCcccEEEcCCCcEEEEECCccccC
Confidence            4689999999999999999998889999999997433

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=98.05  E-value=3.1e-06  Score=59.65  Aligned_cols=35  Identities=26%  Similarity=0.554  Sum_probs=31.6

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLF   35 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla   35 (93)
                      |.|||..+++|++|++.||+++.++.+++.+|+..
T Consensus       114 L~~LH~~~iiH~dlkp~Nil~~~~~~~~l~~~~~~  148 (327)
T cd08227         114 LDYIHHMGYVHRSVKASHILISVDGKVYLSGLRSN  148 (327)
T ss_pred             HHHHHHCCEecCCCChhhEEEecCCcEEEcccchh
Confidence            46899999999999999999998888999998754

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=98.05  E-value=3.7e-06  Score=57.91  Aligned_cols=37  Identities=22%  Similarity=0.447  Sum_probs=30.8

Q ss_pred             CccchhCCccccCCCCCceEEecCC-------cEEEeecccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNN-------KVVITDFGLFNF   37 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~-------~~kl~dfgla~~   37 (93)
                      |.|||.++++|++|++.||+++..+       .+++.|||++..
T Consensus       130 l~~lH~~~iiH~dlkp~Nill~~~~~~~~~~~~~kl~d~g~~~~  173 (274)
T cd05076         130 LSYLEDKNLVHGNVCAKNILLARLGLAEGTSPFIKLSDPGVSFT  173 (274)
T ss_pred             HHHHHcCCccCCCCCcccEEEeccCcccCccceeeecCCccccc
Confidence            4689999999999999999997532       378999998653

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=98.04  E-value=2.8e-06  Score=55.87  Aligned_cols=40  Identities=40%  Similarity=0.795  Sum_probs=35.3

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKL   40 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~   40 (93)
                      +.+||..+++|+++++.||+++..+.++++|||++.....
T Consensus       100 l~~lh~~~i~h~~i~~~ni~~~~~~~~~l~d~~~~~~~~~  139 (244)
T smart00220      100 LEYLHSNGIIHRDLKPENILLDEDGHVKLADFGLARQLDP  139 (244)
T ss_pred             HHHHHHcCeecCCcCHHHeEECCCCcEEEccccceeeecc
Confidence            3589999999999999999999889999999999866543

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>smart00090 RIO RIO-like kinase

Probab=98.02  E-value=2.8e-06  Score=58.66  Aligned_cols=38  Identities=34%  Similarity=0.426  Sum_probs=33.1

Q ss_pred             CccchhCC-ccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARG-ILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~-iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      +.+||..+ ++|+|++|.||+++ ...++++|||++....
T Consensus       161 l~~LH~~g~iiH~Dikp~NIli~-~~~i~LiDFg~a~~~~  199 (237)
T smart00090      161 MRKLYKEGELVHGDLSEYNILVH-DGKVVIIDVSQSVELD  199 (237)
T ss_pred             HHHHHhcCCEEeCCCChhhEEEE-CCCEEEEEChhhhccC
Confidence            35799999 99999999999998 7789999999976543

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=98.00  E-value=3.4e-06  Score=59.52  Aligned_cols=35  Identities=26%  Similarity=0.648  Sum_probs=31.7

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLF   35 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla   35 (93)
                      |.|||+.+++|++|+|.||++...+.+++.+|+.+
T Consensus       114 L~~lH~~~ivHrDlkp~Nill~~~~~~~~~~~~~~  148 (328)
T cd08226         114 LNYLHQNGYIHRNIKASHILISGDGLVSLSGLSHL  148 (328)
T ss_pred             HHHHHhCCeecCCCCHHHEEEeCCCcEEEechHHH
Confidence            46899999999999999999998899999998754

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=97.99  E-value=3e-06  Score=58.31  Aligned_cols=57  Identities=21%  Similarity=0.308  Sum_probs=40.3

Q ss_pred             Cccchh-CCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHA-RGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs-~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||. .+++|+++++.||++..++.++++|||++......    ......++..|.+|+.
T Consensus       116 l~~LH~~~~i~H~dl~p~nil~~~~~~~~l~d~gl~~~~~~~----~~~~~~~~~~~~aPE~  173 (284)
T cd06620         116 LTYLYNVHRIMHRDIKPSNILVNSRGQIKLCDFGVSGELINS----IADTFVGTSTYMSPER  173 (284)
T ss_pred             HHHHHHhcCeeccCCCHHHEEECCCCcEEEccCCcccchhhh----ccCccccCcccCCHHH
Confidence            358886 58999999999999999899999999987543211    1112234555556654

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=97.99  E-value=4.4e-06  Score=55.64  Aligned_cols=61  Identities=30%  Similarity=0.474  Sum_probs=42.7

Q ss_pred             ccchhCCccccCCCCCceEEecCC-cEEEeeccccccccccCCCC----CCCCCCCCCCCChhhhh
Q psy700            2 GYLHARGILHKDLKSKNIFIEKNN-KVVITDFGLFNFSKLYNSYT----SNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         2 ~~lhs~~iihrdlk~~nill~~~~-~~kl~dfgla~~~~~~~~~~----~~~~~~~~~~~~p~e~~   62 (93)
                      .|+|..+++||+++|.|+++.... .+++.|||+++.........    ......+..+|.+|+.-
T Consensus       115 ~~~H~~~~~hrd~kp~nil~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~t~~~~~pe~~  180 (384)
T COG0515         115 EYLHSKGIIHRDIKPENILLDRDGRVVKLIDFGLAKLLPDPGSTSSIPALPSTSVGTPGYMAPEVL  180 (384)
T ss_pred             HHHHhCCeeccCCCHHHeeecCCCCeEEEeccCcceecCCCCccccccccccccccccccCCHHHh
Confidence            479999999999999999999877 69999999987544333221    12333344555555543

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=97.98  E-value=4.4e-06  Score=56.14  Aligned_cols=39  Identities=38%  Similarity=0.650  Sum_probs=32.8

Q ss_pred             CccchhCCccccCCCCCceEEecC-CcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKN-NKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~-~~~kl~dfgla~~~~   39 (93)
                      |.|+|+++++|+++++.||+++.. ..++++|||++....
T Consensus       114 l~~lh~~~i~h~dl~~~nil~~~~~~~~~l~d~~~~~~~~  153 (256)
T cd08220         114 LHHVHTKLILHRDLKTQNILLDKHKMVVKIGDFGISKILS  153 (256)
T ss_pred             HHHHHhCCeecCCCCHHHEEEcCCCCEEEEccCCCceecC
Confidence            468999999999999999999754 457999999986543

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=97.98  E-value=3.9e-06  Score=56.42  Aligned_cols=39  Identities=41%  Similarity=0.697  Sum_probs=33.0

Q ss_pred             CccchhCCccccCCCCCceEEecCC-cEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNN-KVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~-~~kl~dfgla~~~~   39 (93)
                      |.|||+.+++|+++++.||+++.+. .++++|||++....
T Consensus       114 l~~lh~~~i~H~dl~~~nil~~~~~~~~~l~d~~~~~~~~  153 (257)
T cd08225         114 LKHIHDRKILHRDIKSQNIFLSKNGMVAKLGDFGIARQLN  153 (257)
T ss_pred             HHHHHHCCcccccCCHHHEEEcCCCCeEEecccccchhcc
Confidence            4689999999999999999998764 46999999876543

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=97.98  E-value=5.8e-06  Score=52.80  Aligned_cols=39  Identities=46%  Similarity=0.897  Sum_probs=34.5

Q ss_pred             CccchhCCccccCCCCCceEEec-CCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEK-NNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~-~~~~kl~dfgla~~~~   39 (93)
                      +.+||..+++|+++++.||++.. ...++++||+++....
T Consensus       105 l~~lh~~~~~H~dl~~~ni~~~~~~~~~~l~d~~~~~~~~  144 (215)
T cd00180         105 LEYLHSNGIIHRDLKPENILLDSDNGKVKLADFGLSKLLT  144 (215)
T ss_pred             HHHHHhCCeeccCCCHhhEEEeCCCCcEEEecCCceEEcc
Confidence            36899999999999999999998 7889999999886554

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=97.97  E-value=4.4e-06  Score=67.81  Aligned_cols=39  Identities=38%  Similarity=0.621  Sum_probs=30.8

Q ss_pred             CccchhC-------CccccCCCCCceEEecC-----------------CcEEEeecccccccc
Q psy700            1 MGYLHAR-------GILHKDLKSKNIFIEKN-----------------NKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~-------~iihrdlk~~nill~~~-----------------~~~kl~dfgla~~~~   39 (93)
                      |.|||..       +|+|+||+|.|||+...                 ..++|+|||++....
T Consensus       131 LaYLHs~g~~~~~k~IVHRDLKPeNILL~s~~~~lg~i~~~~~n~ng~~iVKLsDFGlAr~l~  193 (1021)
T PTZ00266        131 LAYCHNLKDGPNGERVLHRDLKPQNIFLSTGIRHIGKITAQANNLNGRPIAKIGDFGLSKNIG  193 (1021)
T ss_pred             HHHHHhcccccccCCceeccCcHHHeEeecCccccccccccccccCCCCceEEccCCcccccc
Confidence            4688974       49999999999999642                 247999999986543

>PRK14879 serine/threonine protein kinase; Provisional

Probab=97.92  E-value=7.5e-06  Score=54.32  Aligned_cols=38  Identities=45%  Similarity=0.851  Sum_probs=33.1

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.++|..+++|+|+++.||+++ ...++++|||++.+..
T Consensus       108 l~~lH~~~i~H~Dl~p~Nil~~-~~~~~liDf~~a~~~~  145 (211)
T PRK14879        108 VGKLHSAGIIHGDLTTSNMILS-GGKIYLIDFGLAEFSK  145 (211)
T ss_pred             HHHHHhCCcccCCCCcccEEEE-CCCEEEEECCcccCCC
Confidence            3578999999999999999998 6778999999987643

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=97.90  E-value=8.1e-06  Score=53.76  Aligned_cols=38  Identities=42%  Similarity=0.801  Sum_probs=33.3

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.++|..+++|+|+++.|++++ ...++++|||++....
T Consensus       103 l~~lH~~gi~H~Dl~~~Nil~~-~~~~~liDfg~a~~~~  140 (199)
T TIGR03724       103 VGKLHKAGIVHGDLTTSNIIVR-DDKLYLIDFGLGKYSD  140 (199)
T ss_pred             HHHHHHCCeecCCCCcceEEEE-CCcEEEEECCCCcCCC
Confidence            3579999999999999999998 7889999999986643

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>KOG0576|consensus

Probab=97.89  E-value=1e-05  Score=63.25  Aligned_cols=72  Identities=22%  Similarity=0.360  Sum_probs=54.5

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhhhhhhccchhhc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEEEKEEEGEEEDN   73 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~~~~~~~~~~~~   73 (93)
                      +.|+|+.+-+||+++-.||+++..+.++++|||.+........ ......+.|.|++|+...+.-+-+-+.-|
T Consensus       125 l~ylhs~gk~hRdiKGanilltd~gDvklaDfgvsaqitati~-KrksfiGtpywmapEvaaverkggynqlc  196 (829)
T KOG0576|consen  125 LKYLHSQGKIHRDIKGANILLTDEGDVKLADFGVSAQITATIA-KRKSFIGTPYWMAPEVAAVERKGGYNQLC  196 (829)
T ss_pred             chhhhcCCcccccccccceeecccCceeecccCchhhhhhhhh-hhhcccCCccccchhHHHHHhcccccccc
Confidence            5799999999999999999999999999999998754332221 23444567888888888877665555444

>PRK10345 hypothetical protein; Provisional

Probab=97.89  E-value=5.4e-06  Score=56.51  Aligned_cols=36  Identities=31%  Similarity=0.447  Sum_probs=29.5

Q ss_pred             ccchhCCccccCCCCCceEEecC----CcEEEee-cccccc
Q psy700            2 GYLHARGILHKDLKSKNIFIEKN----NKVVITD-FGLFNF   37 (93)
Q Consensus         2 ~~lhs~~iihrdlk~~nill~~~----~~~kl~d-fgla~~   37 (93)
                      .|||+.+|+|+||+|.||++...    ..++|+| ||...+
T Consensus       119 ~yLh~~~IvhrDlKp~NILl~~~~~~~~~~~LiDg~G~~~~  159 (210)
T PRK10345        119 RYLLDNRIVTMELKPQNILCQRISESEVIPVVCDNIGESTF  159 (210)
T ss_pred             HHHHHCCEeecCCCHHHEEEeccCCCCCcEEEEECCCCcce
Confidence            68999999999999999999743    3699999 555443

>cd05119 RIO RIO kinase family, catalytic domain

Probab=97.88  E-value=9e-06  Score=52.99  Aligned_cols=36  Identities=31%  Similarity=0.362  Sum_probs=31.7

Q ss_pred             ccchh-CCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            2 GYLHA-RGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         2 ~~lhs-~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      .++|. .+++|+|++|.||+++ +..++++|||.+...
T Consensus       128 ~~lh~~~~ivH~Dl~p~Nili~-~~~~~liDfg~a~~~  164 (187)
T cd05119         128 RKLYREAGLVHGDLSEYNILVD-DGKVYIIDVPQAVEI  164 (187)
T ss_pred             HHHhhccCcCcCCCChhhEEEE-CCcEEEEECcccccc
Confidence            46888 9999999999999999 888999999997543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>KOG0590|consensus

Probab=97.87  E-value=1.3e-05  Score=62.06  Aligned_cols=39  Identities=36%  Similarity=0.681  Sum_probs=35.3

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      +.|+|..|+.||++++.|+++...+.++++|||.+..+.
T Consensus       433 v~y~h~~GiahrdlK~enll~~~~g~lki~Dfg~~~vf~  471 (601)
T KOG0590|consen  433 VKYLHSMGLAHRDLKLENLLVTENGILKIIDFGAASVFR  471 (601)
T ss_pred             HHHHHhcCceeccCccccEEEecCCceEEeecCcceeec
Confidence            479999999999999999999999999999999876544

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=97.85  E-value=7.2e-06  Score=62.24  Aligned_cols=38  Identities=34%  Similarity=0.737  Sum_probs=33.4

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.+||..+++|+|++|.||++ ....++++|||+++...
T Consensus       441 L~~lH~~giiHrDlkp~NILl-~~~~~~liDFGla~~~~  478 (535)
T PRK09605        441 VAKLHKAGIVHGDLTTSNFIV-RDDRLYLIDFGLGKYSD  478 (535)
T ss_pred             HHHHHhCCCccCCCChHHEEE-ECCcEEEEeCcccccCC
Confidence            468999999999999999999 56778999999987654

>KOG1163|consensus

Probab=97.85  E-value=1.1e-05  Score=57.14  Aligned_cols=39  Identities=33%  Similarity=0.668  Sum_probs=32.0

Q ss_pred             CccchhCCccccCCCCCceEEec---CCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEK---NNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~---~~~~kl~dfgla~~~~   39 (93)
                      +.|+|.+++|||||+|.|.+..-   ...+.++|||+|+...
T Consensus       124 iEyvH~r~fiHRDIKPdNFLMGlgrh~~kl~LIDFGLaKky~  165 (341)
T KOG1163|consen  124 IEYVHLRNFIHRDIKPDNFLMGLGRHCNKLYLIDFGLAKKYR  165 (341)
T ss_pred             HHHHHhhccccccCCccceeeccccccceEEEEeccchhhhc
Confidence            46899999999999999998863   3457799999997543

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=97.84  E-value=1.5e-05  Score=53.91  Aligned_cols=37  Identities=49%  Similarity=0.855  Sum_probs=32.0

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      +.|||..+++|+++++.||++.. ..++++|||++...
T Consensus       119 l~~lH~~~i~h~~l~~~nili~~-~~~~l~d~g~~~~~  155 (260)
T cd08222         119 VHYMHQRRILHRDLKAKNIFLKN-NLLKIGDFGVSRLL  155 (260)
T ss_pred             HHHHHHcCccccCCChhheEeec-CCEeecccCceeec
Confidence            46899999999999999999975 45899999987654

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=97.84  E-value=1.1e-05  Score=52.78  Aligned_cols=39  Identities=44%  Similarity=0.815  Sum_probs=34.8

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      +.++|..+++|+++++.|++++....++++|||++....
T Consensus       111 l~~lh~~~i~h~di~~~ni~v~~~~~~~l~d~g~~~~~~  149 (225)
T smart00221      111 LEYLHSLGIVHRDLKPENILLGMDGLVKLADFGLARFIH  149 (225)
T ss_pred             HHHHHhCCeecCCCCHHHEEEcCCCCEEEeeCceeeEec
Confidence            357999999999999999999988999999999886654

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>KOG1151|consensus

Probab=97.83  E-value=1.1e-05  Score=61.17  Aligned_cols=60  Identities=27%  Similarity=0.289  Sum_probs=42.5

Q ss_pred             ccchh--CCccccCCCCCceEEec---CCcEEEeeccccccccccCCCC-----CCCCCCCCCCCChhhh
Q psy700            2 GYLHA--RGILHKDLKSKNIFIEK---NNKVVITDFGLFNFSKLYNSYT-----SNEKPSSPLGEGKEEE   61 (93)
Q Consensus         2 ~~lhs--~~iihrdlk~~nill~~---~~~~kl~dfgla~~~~~~~~~~-----~~~~~~~~~~~~p~e~   61 (93)
                      .||..  ..|||-||+|.|||+..   .+.+|+.|||++++........     .+....++.||.||+-
T Consensus       582 ~YLNEikpPIIHYDLKPgNILLv~GtacGeIKITDFGLSKIMdddSy~~vdGmeLTSQgAGTYWYLPPEc  651 (775)
T KOG1151|consen  582 KYLNEIKPPIIHYDLKPGNILLVNGTACGEIKITDFGLSKIMDDDSYNSVDGMELTSQGAGTYWYLPPEC  651 (775)
T ss_pred             HHHhccCCCeeeeccCCccEEEecCcccceeEeeecchhhhccCCccCcccceeeecccCceeeecCcce
Confidence            35553  36999999999999953   4668999999999876444331     2334456778888863

>KOG1167|consensus

Probab=97.80  E-value=8.8e-06  Score=60.25  Aligned_cols=37  Identities=35%  Similarity=0.696  Sum_probs=31.9

Q ss_pred             CccchhCCccccCCCCCceEEec-CCcEEEeecccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEK-NNKVVITDFGLFNF   37 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~-~~~~kl~dfgla~~   37 (93)
                      |.++|.+||+|||++|.|++++. .+.-.|+|||+|.+
T Consensus       145 l~~~h~~GIvHRDiKpsNFL~n~~t~rg~LvDFgLA~~  182 (418)
T KOG1167|consen  145 LAHLHKNGIVHRDIKPSNFLYNRRTQRGVLVDFGLAQR  182 (418)
T ss_pred             hhhhhccCccccCCCccccccccccCCceEEechhHHH
Confidence            56899999999999999999984 45567999999974

>KOG0610|consensus

Probab=97.80  E-value=1.7e-05  Score=59.08  Aligned_cols=38  Identities=34%  Similarity=0.675  Sum_probs=35.0

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|||-.|||+|||||.|||+..++.+-|.||.++...
T Consensus       192 LEYLHmlGivYRDLKPENILvredGHIMLsDFDLS~~~  229 (459)
T KOG0610|consen  192 LEYLHMLGIVYRDLKPENILVREDGHIMLSDFDLSLRC  229 (459)
T ss_pred             HHHHHhhceeeccCCcceeEEecCCcEEeeeccccccC
Confidence            47999999999999999999999999999999997544

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=97.77  E-value=1.3e-05  Score=55.54  Aligned_cols=37  Identities=24%  Similarity=0.379  Sum_probs=32.0

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |..+|..+++|+|++|.|++++.++ ++++|||.....
T Consensus       148 l~~lH~~gi~H~Dikp~Nili~~~g-i~liDfg~~~~~  184 (232)
T PRK10359        148 IESLHQHGMVSGDPHKGNFIVSKNG-LRIIDLSGKRCT  184 (232)
T ss_pred             HHHHHHcCCccCCCChHHEEEeCCC-EEEEECCCcccc
Confidence            3568999999999999999998877 999999976543

>KOG0607|consensus

Probab=97.76  E-value=2.5e-05  Score=57.12  Aligned_cols=37  Identities=43%  Similarity=0.687  Sum_probs=30.8

Q ss_pred             CccchhCCccccCCCCCceEEecC---CcEEEeecccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKN---NKVVITDFGLFNF   37 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~---~~~kl~dfgla~~   37 (93)
                      |.|||.+||.|||++|.||+-...   ..+||+||.++..
T Consensus       189 LdFlH~kgIAHRDlKPENiLC~~pn~vsPvKiCDfDLgSg  228 (463)
T KOG0607|consen  189 LDFLHTKGIAHRDLKPENILCESPNKVSPVKICDFDLGSG  228 (463)
T ss_pred             HHHHhhcCcccccCCccceeecCCCCcCceeeeccccccc
Confidence            468999999999999999988533   3579999988654

>KOG0199|consensus

Probab=97.75  E-value=1.2e-05  Score=63.57  Aligned_cols=61  Identities=25%  Similarity=0.427  Sum_probs=45.8

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCC-CCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYT-SNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~-~~~~~~~~~~~~p~e~   61 (93)
                      |.||.++++|||||-.+|+++.....+||+||||.+..+....+. .......|+-|-+||.
T Consensus       225 M~YLeskrlvHRDLAARNlllasprtVKI~DFGLmRaLg~ned~Yvm~p~rkvPfAWCaPEs  286 (1039)
T KOG0199|consen  225 MQYLESKRLVHRDLAARNLLLASPRTVKICDFGLMRALGENEDMYVMAPQRKVPFAWCAPES  286 (1039)
T ss_pred             HHHHhhhhhhhhhhhhhhheecccceeeeecccceeccCCCCcceEecCCCcCcccccCHhH
Confidence            578999999999999999999998999999999988766444433 2333345665555543

>KOG2052|consensus

Probab=97.66  E-value=4.3e-05  Score=57.47  Aligned_cols=56  Identities=32%  Similarity=0.380  Sum_probs=39.3

Q ss_pred             CccccCCCCCceEEecCCcEEEeeccccccccccC---CCCCCCCCCCCCCCChhhhhh
Q psy700            8 GILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYN---SYTSNEKPSSPLGEGKEEEEE   63 (93)
Q Consensus         8 ~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~---~~~~~~~~~~~~~~~p~e~~~   63 (93)
                      .+.|||||+.||++..++.+.++|+|+|-......   ........++-.|++|+--++
T Consensus       336 aIAHRDlKSKNILVKkn~~C~IADLGLAv~h~~~t~~idi~~N~rVGTKRYMAPEvLde  394 (513)
T KOG2052|consen  336 AIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSDTDTIDIPPNPRVGTKRYMAPEVLDE  394 (513)
T ss_pred             hhhccccccccEEEccCCcEEEeeceeeEEecccCCcccCCCCCccceeeccChHHhhh
Confidence            48999999999999999999999999986543222   122344455555555554443

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=97.64  E-value=2.1e-05  Score=56.17  Aligned_cols=56  Identities=23%  Similarity=0.379  Sum_probs=36.0

Q ss_pred             ccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            2 GYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         2 ~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      +++|..|++|.++++.|++++.++.+.|.||+.....+....   .  ...+.++.||+..
T Consensus       159 A~Lh~~GlVHgdi~~~nfll~~~G~v~Lg~F~~~~r~g~~~~---~--~~~~~~~~PPe~~  214 (288)
T PF14531_consen  159 ANLHSYGLVHGDIKPENFLLDQDGGVFLGDFSSLVRAGTRYR---C--SEFPVAFTPPELE  214 (288)
T ss_dssp             HHHHHTTEEEST-SGGGEEE-TTS-EEE--GGGEEETTEEEE---G--GGS-TTTS-HHHH
T ss_pred             HHHhhcceEecccceeeEEEcCCCCEEEcChHHHeecCceee---c--cCCCcccCChhhh
Confidence            579999999999999999999999999999986543332111   1  2344777788754

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=97.58  E-value=4.9e-05  Score=51.59  Aligned_cols=37  Identities=43%  Similarity=0.745  Sum_probs=31.5

Q ss_pred             ccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            2 GYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         2 ~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      .-||..+++|.||.++|+++.... +.++|||++.+..
T Consensus       106 g~lH~~givHGDLTtsNiIl~~~~-i~~IDfGLg~~s~  142 (204)
T COG3642         106 GKLHKAGIVHGDLTTSNIILSGGR-IYFIDFGLGEFSD  142 (204)
T ss_pred             HHHHhcCeecCCCccceEEEeCCc-EEEEECCcccccc
Confidence            458999999999999999997554 7899999987644

>KOG0670|consensus

Probab=97.58  E-value=2.2e-05  Score=60.33  Aligned_cols=37  Identities=35%  Similarity=0.683  Sum_probs=30.0

Q ss_pred             cchhCCccccCCCCCceEEec-CCcEEEeecccccccc
Q psy700            3 YLHARGILHKDLKSKNIFIEK-NNKVVITDFGLFNFSK   39 (93)
Q Consensus         3 ~lhs~~iihrdlk~~nill~~-~~~~kl~dfgla~~~~   39 (93)
                      +|-..+|+|.+|+|.|||++. ...+||||||.|.+..
T Consensus       551 lLK~c~vlHaDIKPDNiLVNE~k~iLKLCDfGSA~~~~  588 (752)
T KOG0670|consen  551 LLKKCGVLHADIKPDNILVNESKNILKLCDFGSASFAS  588 (752)
T ss_pred             HHHhcCeeecccCccceEeccCcceeeeccCccccccc
Confidence            344579999999999999984 4568999999986544

>KOG0671|consensus

Probab=97.49  E-value=7.1e-05  Score=55.26  Aligned_cols=42  Identities=29%  Similarity=0.535  Sum_probs=33.1

Q ss_pred             CccchhCCccccCCCCCceEEecC--------------------CcEEEeeccccccccccC
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKN--------------------NKVVITDFGLFNFSKLYN   42 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~--------------------~~~kl~dfgla~~~~~~~   42 (93)
                      |.|||+.+++|.||+|.||++...                    ..++++|||.|.+-..+.
T Consensus       205 v~fLh~~kl~HTDLKPENILfvss~~~~~~~~k~~~~~~r~~ks~~I~vIDFGsAtf~~e~h  266 (415)
T KOG0671|consen  205 VAFLHDLKLTHTDLKPENILFVSSEYFKTYNPKKKVCFIRPLKSTAIKVIDFGSATFDHEHH  266 (415)
T ss_pred             HHHHHhcceeecCCChheEEEeccceEEEeccCCccceeccCCCcceEEEecCCcceeccCc
Confidence            468999999999999999987321                    236899999987765444

>KOG1165|consensus

Probab=97.49  E-value=7.8e-05  Score=54.75  Aligned_cols=38  Identities=26%  Similarity=0.585  Sum_probs=32.0

Q ss_pred             CccchhCCccccCCCCCceEEecCC-----cEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNN-----KVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~-----~~kl~dfgla~~~   38 (93)
                      |.++|.+.+|.|||+|.|.|+.+.+     .+.++|||+|+.-
T Consensus       137 ie~vH~k~LIYRDIKPdNFLIGrp~~k~~n~IhiiDFGmAK~Y  179 (449)
T KOG1165|consen  137 IEYVHEKDLIYRDIKPDNFLIGRPGTKDANVIHIIDFGMAKEY  179 (449)
T ss_pred             HHHHHhcceeecccCccceeecCCCCCCCceEEEEeccchhhh
Confidence            4689999999999999999997543     3679999999754

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=97.42  E-value=8.9e-05  Score=45.39  Aligned_cols=38  Identities=24%  Similarity=0.397  Sum_probs=31.5

Q ss_pred             ccchh---CCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            2 GYLHA---RGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         2 ~~lhs---~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      .++|.   .+++|+|+++.|+++.....+++.||+++....
T Consensus       100 ~~lh~~~~~~i~H~Dl~~~Nil~~~~~~~~l~Df~~~~~~~  140 (155)
T cd05120         100 AKLHQLPLLVLCHGDLHPGNILVDDGKILGIIDWEYAGYGP  140 (155)
T ss_pred             HHHhCCCceEEEecCCCcceEEEECCcEEEEEecccccCCC
Confidence            35665   369999999999999987889999999876543

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>KOG2345|consensus

Probab=97.37  E-value=0.00011  Score=51.92  Aligned_cols=39  Identities=26%  Similarity=0.452  Sum_probs=34.0

Q ss_pred             CccchhCC--ccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARG--ILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~--iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.+||...  +.|+|++|.||+++..+...+.|||.+...+
T Consensus       140 L~~lH~~~~~yAH~DiKP~NILls~~~~~vl~D~GS~~~a~  180 (302)
T KOG2345|consen  140 LEALHEKEPPYAHRDIKPANILLSDSGLPVLMDLGSATQAP  180 (302)
T ss_pred             HHHHhccCCcccccCCCcceeEecCCCceEEEeccCccccc
Confidence            35788887  9999999999999998999999999876554

>KOG1025|consensus

Probab=97.28  E-value=0.00011  Score=58.97  Aligned_cols=42  Identities=36%  Similarity=0.654  Sum_probs=37.4

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccC
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYN   42 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~   42 (93)
                      |.|||.++++||+|-.+|+|+..-..+|+.|||+++......
T Consensus       811 M~YLe~qrlVHrdLaaRNVLVksP~hvkitdfgla~ll~~d~  852 (1177)
T KOG1025|consen  811 MKYLEEQRLVHRDLAARNVLVKSPNHVKITDFGLAKLLAPDE  852 (1177)
T ss_pred             HHHHHhcchhhhhhhhhheeecCCCeEEEEecchhhccCccc
Confidence            579999999999999999999988899999999998765444

>KOG1024|consensus

Probab=97.24  E-value=0.00019  Score=53.74  Aligned_cols=63  Identities=24%  Similarity=0.256  Sum_probs=48.8

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEEE   63 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~~   63 (93)
                      |.|||.+++||.||-.+|++++....+|++|-++++-..+....--+..-..|+-|+.++.-.
T Consensus       409 m~hlh~~~ViHkDiAaRNCvIdd~LqVkltDsaLSRDLFP~DYhcLGDnEnRPvkWMslEal~  471 (563)
T KOG1024|consen  409 MEHLHNHGVIHKDIAARNCVIDDQLQVKLTDSALSRDLFPGDYHCLGDNENRPVKWMSLEALQ  471 (563)
T ss_pred             HHHHHhcCcccchhhhhcceehhheeEEeccchhccccCcccccccCCCCCCcccccCHHHHh
Confidence            468999999999999999999999999999999987655444444444455677677666543

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=97.23  E-value=0.00021  Score=53.43  Aligned_cols=37  Identities=32%  Similarity=0.592  Sum_probs=32.6

Q ss_pred             cchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            3 YLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         3 ~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      .+|..|++|+|++|.||++..++.++++|||++....
T Consensus       272 ql~~~g~~H~D~hPgNilv~~~g~i~liDfG~~~~l~  308 (437)
T TIGR01982       272 QVLRDGFFHADLHPGNIFVLKDGKIIALDFGIVGRLS  308 (437)
T ss_pred             HHHhCCceeCCCCcccEEECCCCcEEEEeCCCeeECC
Confidence            4678899999999999999988899999999976543

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>cd05151 ChoK Choline Kinase (ChoK)

Probab=97.21  E-value=0.00029  Score=44.93  Aligned_cols=37  Identities=19%  Similarity=0.382  Sum_probs=30.1

Q ss_pred             ccchhCC-----ccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            2 GYLHARG-----ILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         2 ~~lhs~~-----iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      ..||..+     ++|+|+++.||+++ ...++++||+.+....
T Consensus        97 ~~LH~~~~~~~~~~HgD~~~~Nil~~-~~~~~liDf~~a~~~~  138 (170)
T cd05151          97 KKLHSSPLPDLVPCHNDLLPGNFLLD-DGRLWLIDWEYAGMND  138 (170)
T ss_pred             HHHhCCCCCCceeecCCCCcCcEEEE-CCeEEEEecccccCCC
Confidence            4577766     49999999999998 5678999999876543

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>KOG0606|consensus

Probab=97.03  E-value=0.00025  Score=58.01  Aligned_cols=40  Identities=40%  Similarity=0.733  Sum_probs=36.3

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKL   40 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~   40 (93)
                      +.|+|..+++|+++++.|+++...+.+|+.|||+++...+
T Consensus       156 ~Eylh~ygivhrdlkpdnllIT~mGhiKlTDfgLsk~GLm  195 (1205)
T KOG0606|consen  156 VEYLHSYGIVHRDLKPDNLLITSMGHIKLTDFGLSKKGLM  195 (1205)
T ss_pred             hHhhccCCeecCCCCCCcceeeecccccccchhhhhhhhh
Confidence            4799999999999999999999999999999999876543

>KOG1166|consensus

Probab=97.02  E-value=0.00034  Score=56.88  Aligned_cols=35  Identities=34%  Similarity=0.613  Sum_probs=29.6

Q ss_pred             ccchhCCccccCCCCCceEEecC-------CcEEEeeccccc
Q psy700            2 GYLHARGILHKDLKSKNIFIEKN-------NKVVITDFGLFN   36 (93)
Q Consensus         2 ~~lhs~~iihrdlk~~nill~~~-------~~~kl~dfgla~   36 (93)
                      ..||..+|||+||+|.|+++...       ..++|+|||.|-
T Consensus       808 e~lH~~~IIHgDiKPDNfll~~~~~~~~~~~~l~lIDfG~si  849 (974)
T KOG1166|consen  808 EHLHAMGIIHGDIKPDNFLLRREICADSDSKGLYLIDFGRSI  849 (974)
T ss_pred             HHHHhcceecccCCcceeEeecccCCCCcccceEEEecccce
Confidence            57899999999999999999532       357999999874

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=96.90  E-value=0.00074  Score=43.23  Aligned_cols=30  Identities=27%  Similarity=0.350  Sum_probs=23.6

Q ss_pred             ccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            2 GYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         2 ~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      .|||..+      ++.||+++.++.+++  ||++.+..
T Consensus        31 ~~lH~~~------kp~Nil~~~~~~~~~--fG~~~~~~   60 (176)
T smart00750       31 RELHRQA------KSGNILLTWDGLLKL--DGSVAFKT   60 (176)
T ss_pred             HHHHhcC------CcccEeEcCccceee--ccceEeec
Confidence            4566665      999999998888888  99886654

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=96.88  E-value=0.00071  Score=45.53  Aligned_cols=38  Identities=29%  Similarity=0.606  Sum_probs=32.2

Q ss_pred             ccchhCCccccCCCCCceEEecCC---cEEEeecccccccc
Q psy700            2 GYLHARGILHKDLKSKNIFIEKNN---KVVITDFGLFNFSK   39 (93)
Q Consensus         2 ~~lhs~~iihrdlk~~nill~~~~---~~kl~dfgla~~~~   39 (93)
                      .-||..|++|+|+.+.||++....   .+.++||..+++..
T Consensus       132 ~~lH~~gi~H~Dl~~~NILv~~~~~~~~~~lIDld~~~~~~  172 (206)
T PF06293_consen  132 AKLHDAGIYHGDLNPSNILVDPDDGQYRFYLIDLDRMRFRP  172 (206)
T ss_pred             HHHHHCcCCCCCCCcccEEEeCCCCceeEEEEcchhceeCC
Confidence            458999999999999999998776   78899999876543

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=96.80  E-value=0.00059  Score=46.27  Aligned_cols=31  Identities=23%  Similarity=0.307  Sum_probs=27.1

Q ss_pred             hhCCccccCCCCCceEEecCCcEEEeeccccc
Q psy700            5 HARGILHKDLKSKNIFIEKNNKVVITDFGLFN   36 (93)
Q Consensus         5 hs~~iihrdlk~~nill~~~~~~kl~dfgla~   36 (93)
                      |..+++|+||++.||++. .+.+.++|||-+-
T Consensus       142 H~~glVHGDLs~~NIL~~-~~~v~iIDF~qav  172 (197)
T cd05146         142 KECNLVHADLSEYNMLWH-DGKVWFIDVSQSV  172 (197)
T ss_pred             HhCCeecCCCCHHHEEEE-CCcEEEEECCCce
Confidence            789999999999999996 4568899999764

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>KOG3087|consensus

Probab=96.77  E-value=0.00098  Score=45.65  Aligned_cols=37  Identities=38%  Similarity=0.709  Sum_probs=30.5

Q ss_pred             ccchhCCccccCCCCCceEEecCC---cEEEeeccccccc
Q psy700            2 GYLHARGILHKDLKSKNIFIEKNN---KVVITDFGLFNFS   38 (93)
Q Consensus         2 ~~lhs~~iihrdlk~~nill~~~~---~~kl~dfgla~~~   38 (93)
                      .-||..+++|.||.++||++..++   .+.++|||++...
T Consensus       127 gklH~ndiiHGDLTTSNill~~~~~~~~~~lIdfgls~~s  166 (229)
T KOG3087|consen  127 GKLHDNDIIHGDLTTSNILLRSDGNQITPILIDFGLSSVS  166 (229)
T ss_pred             HHhhhCCeecccccccceEEecCCCcCceEEEeecchhcc
Confidence            468999999999999999997543   3479999998654

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=96.65  E-value=0.0012  Score=46.50  Aligned_cols=36  Identities=22%  Similarity=0.308  Sum_probs=30.4

Q ss_pred             ccchhCCccccCCCCCceEEec-------CCcEEEeecccccc
Q psy700            2 GYLHARGILHKDLKSKNIFIEK-------NNKVVITDFGLFNF   37 (93)
Q Consensus         2 ~~lhs~~iihrdlk~~nill~~-------~~~~kl~dfgla~~   37 (93)
                      .-||..|++|+|+.+.||++..       ...+.++||+.+..
T Consensus       152 ~~LH~~Gi~HgDL~~~NiLl~~~~~~~~~~~~~~LIDl~r~~~  194 (268)
T PRK15123        152 RDMHAAGINHRDCYICHFLLHLPFPGREEDLKLSVIDLHRAQI  194 (268)
T ss_pred             HHHHHCcCccCCCChhhEEEeccccCCCCCceEEEEECCcccc
Confidence            4589999999999999999975       35688999998753

>KOG4158|consensus

Probab=96.61  E-value=0.0011  Score=49.98  Aligned_cols=34  Identities=44%  Similarity=0.814  Sum_probs=28.3

Q ss_pred             ccchhCCccccCCCCCceEEe--cC--CcEEEeecccc
Q psy700            2 GYLHARGILHKDLKSKNIFIE--KN--NKVVITDFGLF   35 (93)
Q Consensus         2 ~~lhs~~iihrdlk~~nill~--~~--~~~kl~dfgla   35 (93)
                      .|||.+||.|||+++.||++-  .+  -.+.++|||++
T Consensus       355 ~hL~~hgvAhRDlKSDNiL~ElddD~~P~LVvaDFGCc  392 (598)
T KOG4158|consen  355 THLHKHGVAHRDLKSDNILLELDDDEIPQLVVADFGCC  392 (598)
T ss_pred             HHHHHccchhhcccccceEEEecCCCCcEEEEccccee
Confidence            579999999999999999984  22  24679999986

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=96.56  E-value=0.0015  Score=52.41  Aligned_cols=34  Identities=18%  Similarity=0.435  Sum_probs=26.6

Q ss_pred             Cccch---hCCccccCCCCCceEEecCCcEEEeecccc
Q psy700            1 MGYLH---ARGILHKDLKSKNIFIEKNNKVVITDFGLF   35 (93)
Q Consensus         1 l~~lh---s~~iihrdlk~~nill~~~~~~kl~dfgla   35 (93)
                      |.|+|   ..+++|+++++.||+++.....++. |+.+
T Consensus       793 L~yLH~~~~~~iiH~dlkp~Nil~~~~~~~~~~-~~~~  829 (968)
T PLN00113        793 LRFLHCRCSPAVVVGNLSPEKIIIDGKDEPHLR-LSLP  829 (968)
T ss_pred             HHHhccCCCCCeecCCCCHHhEEECCCCceEEE-eccc
Confidence            46899   6699999999999999877766554 5543

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=96.48  E-value=0.0025  Score=42.86  Aligned_cols=33  Identities=45%  Similarity=0.670  Sum_probs=25.8

Q ss_pred             chhCCccccCCCCCceEEecCCcEEEeecccccc
Q psy700            4 LHARGILHKDLKSKNIFIEKNNKVVITDFGLFNF   37 (93)
Q Consensus         4 lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~   37 (93)
                      +|..|++|+|+.+.||++... .+.++|||.+..
T Consensus       123 ~~~~givHGDLs~~NIlv~~~-~~~iIDf~qav~  155 (188)
T PF01163_consen  123 LHKAGIVHGDLSEYNILVDDG-KVYIIDFGQAVD  155 (188)
T ss_dssp             HHCTTEEESS-STTSEEEETT-CEEE--GTTEEE
T ss_pred             HHhcCceecCCChhhEEeecc-eEEEEecCccee
Confidence            578999999999999999876 789999997643

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>KOG1033|consensus

Probab=96.47  E-value=0.00075  Score=51.45  Aligned_cols=56  Identities=27%  Similarity=0.481  Sum_probs=40.6

Q ss_pred             CCccccCCCCCceEEecCCcEEEeeccccccccccC-----CCCCCCCCCCCCCCChhhhh
Q psy700            7 RGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYN-----SYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         7 ~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~-----~~~~~~~~~~~~~~~p~e~~   62 (93)
                      ++.+|+++++.||+...+..+++.|||+........     ....+...+..+|+.|+|..
T Consensus       375 k~~ihrdlkp~nif~~~d~q~kIgDFgl~ts~~~~~~~~~~~a~~t~~~gt~~YmsPEQi~  435 (516)
T KOG1033|consen  375 KGLIHRDLKPSNIFFSDDDQLKIGDFGLVTSQDKDETVAPAAASHTQQVGTLLYMSPEQIR  435 (516)
T ss_pred             ccchhhhccccccccccchhhhhhhhhheeecccCCcccchhhhhhhcccccccCCHHHHh
Confidence            678999999999999988889999999865444333     22344555666666666654

>KOG0590|consensus

Probab=96.25  E-value=0.0026  Score=49.52  Aligned_cols=40  Identities=33%  Similarity=0.683  Sum_probs=35.2

Q ss_pred             Cccch-hCCccccCCCCCceEEecCC-cEEEeeccccccccc
Q psy700            1 MGYLH-ARGILHKDLKSKNIFIEKNN-KVVITDFGLFNFSKL   40 (93)
Q Consensus         1 l~~lh-s~~iihrdlk~~nill~~~~-~~kl~dfgla~~~~~   40 (93)
                      +.|+| ..++.|++++|.|.+++..+ .+++.|||+|.....
T Consensus       136 l~~~H~~~~~~h~~ikP~n~~l~~s~~~l~~~df~~At~~~~  177 (601)
T KOG0590|consen  136 LSYLHPENGVTHRDIKPSNSLLDESGSALKIADFGLATAYRN  177 (601)
T ss_pred             ccccCcccccccCCCCCccchhccCCCcccCCCchhhccccc
Confidence            46899 88999999999999998888 899999999876654

>KOG1240|consensus

Probab=96.05  E-value=0.0019  Score=53.49  Aligned_cols=62  Identities=26%  Similarity=0.213  Sum_probs=41.5

Q ss_pred             ccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCC-----CCCCCCCCCCCCChhhhhh
Q psy700            2 GYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSY-----TSNEKPSSPLGEGKEEEEE   63 (93)
Q Consensus         2 ~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~-----~~~~~~~~~~~~~p~e~~~   63 (93)
                      .-||..+|+|+|||+.||+++.-.++-|.||+..+.......-     ....+-+-..+|.+||+=.
T Consensus       134 ~qcH~~gVcHGDIKsENILiTSWNW~~LtDFAsFKPtYLPeDNPadf~fFFDTSrRRtCYiAPERFv  200 (1431)
T KOG1240|consen  134 SQCHKLGVCHGDIKSENILITSWNWLYLTDFASFKPTYLPEDNPADFTFFFDTSRRRTCYIAPERFV  200 (1431)
T ss_pred             HHHHHcCccccccccceEEEeeechhhhhcccccCCccCCCCCcccceEEEecCCceeeecChHhhh
Confidence            3589999999999999999998788889999876543211111     1112223345677777643

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=95.99  E-value=0.0051  Score=47.43  Aligned_cols=36  Identities=25%  Similarity=0.564  Sum_probs=30.3

Q ss_pred             chhCCccccCCCCCceEEecCC----cEEEeecccccccc
Q psy700            4 LHARGILHKDLKSKNIFIEKNN----KVVITDFGLFNFSK   39 (93)
Q Consensus         4 lhs~~iihrdlk~~nill~~~~----~~kl~dfgla~~~~   39 (93)
                      ++..|++|+|++|.||++..++    .+.++|||+.....
T Consensus       276 if~~GffHaDpHPGNIlv~~~g~~~~~i~llDFGivg~l~  315 (537)
T PRK04750        276 VFRDGFFHADMHPGNIFVSYDPPENPRYIALDFGIVGSLN  315 (537)
T ss_pred             HHhCCeeeCCCChHHeEEecCCCCCCeEEEEecceEEECC
Confidence            3467999999999999998777    89999999876543

>KOG0603|consensus

Probab=95.56  E-value=0.0029  Score=49.20  Aligned_cols=38  Identities=32%  Similarity=0.469  Sum_probs=34.4

Q ss_pred             ccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            2 GYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         2 ~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      .++|..+++++++++.||++...+.+++.|||+++..-
T Consensus       111 d~lh~l~iiyrd~k~enilld~~Ghi~~tdfglske~v  148 (612)
T KOG0603|consen  111 DHLHKLGIAYRDYKLENVLLLLEGHIKLTDFGLSKEAV  148 (612)
T ss_pred             hhcchhHHHHhcccccceeecccCccccCCchhhhHhH
Confidence            57889999999999999999999999999999987654

>KOG1023|consensus

Probab=94.85  E-value=0.0083  Score=45.77  Aligned_cols=39  Identities=36%  Similarity=0.593  Sum_probs=33.6

Q ss_pred             CccchhCCc-cccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGI-LHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~i-ihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|+|...+ .|..+++.|++++..+.+|+.|||+..+..
T Consensus        61 l~ylh~s~i~~hg~l~s~nClvd~~w~lklt~~Gl~~~~~  100 (484)
T KOG1023|consen   61 LAYLHNSPIGYHGALKSSNCLVDSRWVLKLTDFGLNSLLE  100 (484)
T ss_pred             HHHHhcCcceeeeeeccccceeeeeEEEEechhhhccccc
Confidence            468897654 999999999999999999999999976653

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=93.92  E-value=0.051  Score=35.63  Aligned_cols=33  Identities=21%  Similarity=0.452  Sum_probs=27.3

Q ss_pred             CCccccCCCCCceEEec--CCcEEEeecccccccc
Q psy700            7 RGILHKDLKSKNIFIEK--NNKVVITDFGLFNFSK   39 (93)
Q Consensus         7 ~~iihrdlk~~nill~~--~~~~kl~dfgla~~~~   39 (93)
                      ..++|+|+.+.||+++.  ...+.++||+.+....
T Consensus       174 ~~l~HgD~~~~Nil~~~~~~~~~~iID~e~~~~g~  208 (223)
T cd05154         174 PGLVHGDYRLGNVLFHPDEPRVVAVLDWELATLGD  208 (223)
T ss_pred             cEEEECCCCcccEEEcCCCCcEEEEEeccccccCC
Confidence            46899999999999987  4557899999876544

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY)

Probab=93.59  E-value=0.092  Score=36.55  Aligned_cols=34  Identities=26%  Similarity=0.339  Sum_probs=28.4

Q ss_pred             ccchhCCccccCCCCCceEEecCCcEEEeeccccc
Q psy700            2 GYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFN   36 (93)
Q Consensus         2 ~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~   36 (93)
                      .-+|..|++|.|..|.|++++.+ .+.++||+..+
T Consensus       149 kqlH~~G~~HGD~hpgNFlv~~~-~i~iID~~~k~  182 (229)
T PF06176_consen  149 KQLHKHGFYHGDPHPGNFLVSNN-GIRIIDTQGKR  182 (229)
T ss_pred             HHHHHcCCccCCCCcCcEEEECC-cEEEEECcccc
Confidence            34799999999999999998754 48899998754

The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process

>PRK05231 homoserine kinase; Provisional

Probab=93.34  E-value=0.097  Score=36.96  Aligned_cols=33  Identities=27%  Similarity=0.412  Sum_probs=27.0

Q ss_pred             hCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            6 ARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         6 s~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      ..+++|+|+.+.||++..+....++||+.+...
T Consensus       186 p~~liHgD~~~~Nil~~~~~~~~iIDf~~~~~~  218 (319)
T PRK05231        186 PRGVIHADLFRDNVLFEGDRLSGFIDFYFACND  218 (319)
T ss_pred             CcccCCCCCCCCcEEEECCceEEEEecccccCC
Confidence            357999999999999986655689999987544

>PRK09902 hypothetical protein; Provisional

Probab=93.21  E-value=0.055  Score=37.34  Aligned_cols=37  Identities=14%  Similarity=0.133  Sum_probs=30.2

Q ss_pred             ccchhCCccccCCCCCceEEecCCc--EEEeeccccccc
Q psy700            2 GYLHARGILHKDLKSKNIFIEKNNK--VVITDFGLFNFS   38 (93)
Q Consensus         2 ~~lhs~~iihrdlk~~nill~~~~~--~kl~dfgla~~~   38 (93)
                      .-||..|+.|+++-+.||++...+.  +.++||--++..
T Consensus       142 a~LH~~Gv~Hgdly~khIll~~~g~~~v~lIDlEk~r~~  180 (216)
T PRK09902        142 KKMHSVNRQHGCCYVRHIYVKTEGKAEAGFLDLEKSRRR  180 (216)
T ss_pred             HHHHHCCCcCCCCCHhheeecCCCCeeEEEEEhhccchh
Confidence            4589999999999999999975555  889999766543

>cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members

Probab=93.13  E-value=0.098  Score=35.48  Aligned_cols=33  Identities=21%  Similarity=0.433  Sum_probs=27.0

Q ss_pred             CCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            7 RGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         7 ~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      .+++|.|+.+.|+++.......++||+.+....
T Consensus       164 ~~l~HGD~~~~Nvlv~~~~i~giIDw~~a~~gD  196 (235)
T cd05155         164 PVWFHGDLAPGNLLVQDGRLSAVIDFGCLGVGD  196 (235)
T ss_pred             ceEEeCCCCCCcEEEECCCEEEEEeCcccCcCC
Confidence            358999999999999866656799999876554

The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista

>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily

Probab=92.99  E-value=0.072  Score=34.93  Aligned_cols=33  Identities=24%  Similarity=0.492  Sum_probs=22.3

Q ss_pred             CCccccCCCCCceEEe-cCCcEEEeecccccccc
Q psy700            7 RGILHKDLKSKNIFIE-KNNKVVITDFGLFNFSK   39 (93)
Q Consensus         7 ~~iihrdlk~~nill~-~~~~~kl~dfgla~~~~   39 (93)
                      ..++|.|+.+.||+++ .++.+.++||+.+.+..
T Consensus       166 ~~~~HgD~~~~Nil~~~~~~~i~iID~e~a~~~~  199 (239)
T PF01636_consen  166 PVLIHGDLHPGNILVDPSDGRIGIIDFEDAGWGD  199 (239)
T ss_dssp             EEEE-SS-SGGGEEEESSTTEEEE--GTT-EEEE
T ss_pred             cEEEEeccccccceeeeccceeEEEecccceECC
Confidence            4689999999999999 55556899999876654

; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....

>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH)

Probab=92.59  E-value=0.12  Score=34.98  Aligned_cols=33  Identities=18%  Similarity=0.228  Sum_probs=27.7

Q ss_pred             CCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            7 RGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         7 ~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      ..++|+|+.+.|++++....+.|+||+.+.+..
T Consensus       163 ~~l~HgD~~~~Nil~~~~~~~~iIDwe~a~~gd  195 (244)
T cd05150         163 LVVTHGDACLPNIIVDPGKFSGFIDLGRLGVAD  195 (244)
T ss_pred             eEEECCCCCCccEEEeCCcEEEEEEcccccccc
Confidence            358999999999999887667899999886544

The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio

>KOG1290|consensus

Probab=92.05  E-value=0.074  Score=41.02  Aligned_cols=24  Identities=42%  Similarity=0.836  Sum_probs=20.9

Q ss_pred             Cccchh-CCccccCCCCCceEEecC
Q psy700            1 MGYLHA-RGILHKDLKSKNIFIEKN   24 (93)
Q Consensus         1 l~~lhs-~~iihrdlk~~nill~~~   24 (93)
                      |.|||. .+|||.||+|.|||+..+
T Consensus       200 LdYLH~ecgIIHTDlKPENvLl~~~  224 (590)
T KOG1290|consen  200 LDYLHRECGIIHTDLKPENVLLCST  224 (590)
T ss_pred             HHHHHHhcCccccCCCcceeeeecc
Confidence            579997 599999999999999754

>KOG0601|consensus

Probab=91.66  E-value=0.14  Score=39.52  Aligned_cols=38  Identities=39%  Similarity=0.665  Sum_probs=32.7

Q ss_pred             CccchhCCccccCCCCCceEEecC-CcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKN-NKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~-~~~kl~dfgla~~~   38 (93)
                      +.++|+..++|.++++.|+++..+ ..+++.|||+....
T Consensus       235 l~~~hs~~~~~~~~kp~~i~~~~~~~s~~~~df~~v~~i  273 (524)
T KOG0601|consen  235 LSHLHSNNIVHDDLKPANIFTTSDWTSCKLTDFGLVSKI  273 (524)
T ss_pred             ccccCCCcccccccchhheecccccceeecCCcceeEEc
Confidence            467899999999999999999888 78899999976443

>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes

Probab=91.32  E-value=0.21  Score=33.56  Aligned_cols=34  Identities=26%  Similarity=0.336  Sum_probs=27.9

Q ss_pred             CCccccCCCCCceEEec-CCcEEEeeccccccccc
Q psy700            7 RGILHKDLKSKNIFIEK-NNKVVITDFGLFNFSKL   40 (93)
Q Consensus         7 ~~iihrdlk~~nill~~-~~~~kl~dfgla~~~~~   40 (93)
                      .+++|.|+.+.||+++. +..+.++||-.|.+..+
T Consensus       170 ~~l~H~Dl~~~Nil~~~~~~~~~lIDwe~a~~~~~  204 (235)
T cd05157         170 IVFCHNDLLSGNIIYNEEKNSVKFIDYEYAGYNYR  204 (235)
T ss_pred             EEEEcCCCCcCcEEEeCCCCCEEEEEcccCCcCch
Confidence            35899999999999987 46789999998765443

ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo

>cd05153 HomoserineK_II Homoserine Kinase, type II

Probab=91.26  E-value=0.2  Score=34.88  Aligned_cols=32  Identities=25%  Similarity=0.450  Sum_probs=26.8

Q ss_pred             CCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            7 RGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         7 ~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      .+++|.|+.+.|++++....+.++||..+...
T Consensus       175 ~~l~HgD~~~~Nil~~~~~~~~iIDfe~a~~g  206 (296)
T cd05153         175 RGVIHADLFRDNVLFDGDELSGVIDFYFACTD  206 (296)
T ss_pred             CcCCccCcCcccEEEeCCceEEEeehhhhcCc
Confidence            46999999999999987766789999876544

Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a PK fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine.

>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172

Probab=91.01  E-value=0.2  Score=34.25  Aligned_cols=31  Identities=23%  Similarity=0.418  Sum_probs=26.4

Q ss_pred             CccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            8 GILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         8 ~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      .++|.|+.+.||+++..+ +.++||+.+....
T Consensus       154 ~~~HgD~~~~Nii~~~~~-~~iIDwe~a~~Gd  184 (226)
T TIGR02172       154 TCLHGDFQIGNLITSGKG-TYWIDLGDFGYGN  184 (226)
T ss_pred             ceEecCCCCCcEEEcCCC-cEEEechhcCcCC
Confidence            468999999999998777 8899999876554

This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.

>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes

Probab=90.98  E-value=0.22  Score=34.86  Aligned_cols=33  Identities=27%  Similarity=0.453  Sum_probs=27.4

Q ss_pred             CCccccCCCCCceEEecC----CcEEEeecccccccc
Q psy700            7 RGILHKDLKSKNIFIEKN----NKVVITDFGLFNFSK   39 (93)
Q Consensus         7 ~~iihrdlk~~nill~~~----~~~kl~dfgla~~~~   39 (93)
                      .+++|.|+.+.||+++..    ..+.++||..|....
T Consensus       179 ~~lcH~Dl~~~Nil~~~~~~~~~~i~lIDwEya~~~~  215 (302)
T cd05156         179 VVFCHNDLQEGNILLLNPSSETKKLVLIDFEYASYNY  215 (302)
T ss_pred             ceEEecCCCcCeEEecCCCCCCCcEEEEeeCCCCCCC
Confidence            368999999999999874    778999999876543

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer

>TIGR00938 thrB_alt homoserine kinase, Neisseria type

Probab=90.74  E-value=0.28  Score=34.57  Aligned_cols=32  Identities=25%  Similarity=0.453  Sum_probs=27.0

Q ss_pred             CCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            7 RGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         7 ~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      .+++|.|+.+.|++++.+..+.++||+.+...
T Consensus       187 ~~l~HgD~~~~Nvl~~~~~~~~vIDfd~~~~~  218 (307)
T TIGR00938       187 RGVIHADLFPDNVLFDGDSVKGVIDFYFACTD  218 (307)
T ss_pred             CccCCCCCCcCcEEEECCceEEEeecccccCc
Confidence            57999999999999987776689999987543

Homoserine kinase is required in the biosynthesis of threonine from aspartate.The member of this family from Pseudomonas aeruginosa was shown by direct assay and complementation to act specifically as a homoserine kinase.

>COG3173 Predicted aminoglycoside phosphotransferase [General function prediction only]

Probab=89.71  E-value=0.36  Score=35.18  Aligned_cols=33  Identities=18%  Similarity=0.374  Sum_probs=28.7

Q ss_pred             CCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            7 RGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         7 ~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      ..++|.|+.+.|+++.....+.++||+++....
T Consensus       198 ~~lvHGD~~~gNlii~~~~~~gVlDwe~~~lGD  230 (321)
T COG3173         198 PVLVHGDYRPGNLIIDPGRPTGVLDWELATLGD  230 (321)
T ss_pred             ceeeeCCcccCCEEEeCCCeeEEEeccccccCC
Confidence            358999999999999988889999999886554

>smart00587 CHK ZnF_C4 abd HLH domain containing kinases domain

Probab=89.64  E-value=0.31  Score=32.42  Aligned_cols=34  Identities=26%  Similarity=0.445  Sum_probs=27.1

Q ss_pred             CCccccCCCCCceEEecCC-----cEEEeeccccccccc
Q psy700            7 RGILHKDLKSKNIFIEKNN-----KVVITDFGLFNFSKL   40 (93)
Q Consensus         7 ~~iihrdlk~~nill~~~~-----~~kl~dfgla~~~~~   40 (93)
                      ..++|+|+.+.|+++..+.     .+.++||..+.+..+
T Consensus       120 ~vl~HgD~~~~N~~~~~~~~~~~~~~~liDfq~~~~g~p  158 (196)
T smart00587      120 NVLNHGDLWANNIMFKYDDEGKPEDVALIDFQLSHYGSP  158 (196)
T ss_pred             eEEeeCCCCccceeeccCCCCCccceEEEecccCCcCCh
Confidence            4689999999999997443     578999998876553

subfamily of choline kinases

>cd05152 MPH2' Macrolide 2'-Phosphotransferase (MPH2')

Probab=89.21  E-value=0.36  Score=34.02  Aligned_cols=35  Identities=17%  Similarity=0.270  Sum_probs=27.4

Q ss_pred             CCccccCCCCCceEEecCC-cEEEeecccccccccc
Q psy700            7 RGILHKDLKSKNIFIEKNN-KVVITDFGLFNFSKLY   41 (93)
Q Consensus         7 ~~iihrdlk~~nill~~~~-~~kl~dfgla~~~~~~   41 (93)
                      ..++|.|+.+.|++++..+ .+.++||+.+....+.
T Consensus       185 ~~lvHGD~~~~Nilv~~~~~~~gviDWe~a~iGDPa  220 (276)
T cd05152         185 TVLVHGDLHPGHILIDEDARVTGLIDWTEAKVGDPA  220 (276)
T ss_pred             CeeEeCCCCCCcEEEeCCCCEEEEECcHhcccCCHH
Confidence            3589999999999998644 4579999988765433

MPH2' is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). MPH2' catalyzes the transfer of the gamma-phosphoryl group from ATP to the 2'-hydroxyl of macrolide antibiotics such as erythromycin, clarithromycin, and azithromycin, among others. Macrolides penetrate the bacterial cell and bind to ribosomes, where it interrupts protein elongation, leading ultimately to the demise of the bacterium. Phosphorylation of macrolides leads to their inactivation. Based on substrate specificity and amino acid sequence, MPH2' is divided into types I and II, encoded by mphA and mphB genes, respectively. MPH2'I inactivates 14-membered ring macrolides while MPH2'II inactivates both 14- and 16-membered ring macrolides. Enzymatic inactivation of macrolides has been reported

>TIGR02906 spore_CotS spore coat protein, CotS family

Probab=88.84  E-value=0.48  Score=33.08  Aligned_cols=30  Identities=33%  Similarity=0.644  Sum_probs=24.8

Q ss_pred             CCccccCCCCCceEEecCCcEEEeecccccc
Q psy700            7 RGILHKDLKSKNIFIEKNNKVVITDFGLFNF   37 (93)
Q Consensus         7 ~~iihrdlk~~nill~~~~~~kl~dfgla~~   37 (93)
                      .+++|+|+.+.|++++. ..+.++||..+..
T Consensus       187 ~~liHgD~~~~Nil~~~-~~i~lIDfd~~~~  216 (313)
T TIGR02906       187 RGFCHQDYAYHNILLKD-NEVYVIDFDYCTI  216 (313)
T ss_pred             CceEcCCCCcccEEEeC-CcEEEEECccccc
Confidence            47899999999999986 5678999996543

Members of this family include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologs that are more closely related to these two than to the spore coat proteins YutH and YsxE. The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers.

>TIGR02721 ycfN_thiK thiamine kinase

Probab=88.83  E-value=0.41  Score=32.77  Aligned_cols=31  Identities=16%  Similarity=0.298  Sum_probs=25.9

Q ss_pred             CccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            8 GILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         8 ~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      .++|.|+.+.|++++.++ +.++||..+....
T Consensus       147 ~l~H~Dl~~~Nil~~~~~-~~lIDwE~a~~gd  177 (256)
T TIGR02721       147 APLHMDVHAYNLVVTPQG-LKLIDWEYASDGD  177 (256)
T ss_pred             eeecCCCCcCcEEEeCCC-CEEEeccccCcCC
Confidence            589999999999998765 7899998876544

Members of this family are the ycfN gene product of Escherichia coli, now identified as the salvage enzyme thiamine kinase (thiK), and additional proteobacterial homologs taken to be orthologs with equivalent function.

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=88.74  E-value=0.31  Score=35.23  Aligned_cols=30  Identities=33%  Similarity=0.623  Sum_probs=26.8

Q ss_pred             hCCccccCCCCCceEEecCCcEEEeecccc
Q psy700            6 ARGILHKDLKSKNIFIEKNNKVVITDFGLF   35 (93)
Q Consensus         6 s~~iihrdlk~~nill~~~~~~kl~dfgla   35 (93)
                      ..|++|.|++.-||+++.++.+.++||.=+
T Consensus       220 ~~GiVHGDlSefNIlV~~dg~~~vIDwPQ~  249 (304)
T COG0478         220 RRGIVHGDLSEFNILVTEDGDIVVIDWPQA  249 (304)
T ss_pred             HcCccccCCchheEEEecCCCEEEEeCccc
Confidence            679999999999999999989999998643

>PRK10271 thiK thiamine kinase; Provisional

Probab=87.64  E-value=0.65  Score=31.35  Aligned_cols=31  Identities=16%  Similarity=0.251  Sum_probs=25.4

Q ss_pred             CccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            8 GILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         8 ~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      ..+|.|+.+.|+++..++ ++++||+.+....
T Consensus        78 ~p~H~D~~~~N~~~~~~~-~~lIDwe~a~~gD  108 (188)
T PRK10271         78 APLHMDVHAGNLVHSASG-LRLIDWEYAGDGD  108 (188)
T ss_pred             eeecCCCCCccEEEECCC-EEEEeCCcccCCC
Confidence            469999999999987666 8899999875443

>PF01633 Choline_kinase: Choline/ethanolamine kinase; InterPro: IPR002573 Choline kinase, (ATP:choline phosphotransferase, 2

Probab=85.73  E-value=0.47  Score=31.61  Aligned_cols=32  Identities=31%  Similarity=0.524  Sum_probs=21.5

Q ss_pred             CCccccCCCCCceEE-ecCCcEEEeeccccccc
Q psy700            7 RGILHKDLKSKNIFI-EKNNKVVITDFGLFNFS   38 (93)
Q Consensus         7 ~~iihrdlk~~nill-~~~~~~kl~dfgla~~~   38 (93)
                      ..+.|.|+.+.||++ .....++++||-.|...
T Consensus       143 ~v~cHnDl~~~Nil~~~~~~~~~lIDfEya~~n  175 (211)
T PF01633_consen  143 LVFCHNDLNPGNILINNKDGEVKLIDFEYAGYN  175 (211)
T ss_dssp             EEEE-S--SGGGEEETSSSSCEEE--GTT-EEE
T ss_pred             ceEeeccCccccEEeccCCCeEEEecHHHHhhc
Confidence            357999999999999 77888999999877543

7.1.32 from EC) belongs to the choline/ethanolamine kinase family. Ethanolamine and choline are major membrane phospholipids, in the form of glycerophosphoethanolamine and glycerophosphocholine. Ethanolamine is also a component of the glycosylphosphatidylinositol (GPI) anchor, which is necessary for cell-surface protein attachment []. The de novo synthesis of these phospholipids begins with the creation of phosphoethanolamine and phosphocholine by ethanolamine and choline kinases in the first step of the CDP-ethanolamine pathway [, ]. There are two putative choline/ethanolamine kinases (C/EKs) in the Trypanosoma brucei genome. Ethanolamine kinase has no choline kinase activity [] and its activity is inhibited by ADP []. Inositol supplementation represses ethanolamine kinase, decreasing the incorporation of ethanolamine into the CDP-ethanolamine pathway and into phosphatidylethanolamine and phosphatidylcholine []. ; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 3C5I_A 2IG7_A 3LQ3_A 3FEG_A 2QG7_E 3FI8_A 1NW1_A 3MES_A 3G15_A 2CKP_B ....

>KOG2137|consensus

Probab=85.28  E-value=0.5  Score=37.71  Aligned_cols=36  Identities=17%  Similarity=0.480  Sum_probs=31.1

Q ss_pred             Cccchh-CCccccCCCCCceEEecCCcEEEeeccccc
Q psy700            1 MGYLHA-RGILHKDLKSKNIFIEKNNKVVITDFGLFN   36 (93)
Q Consensus         1 l~~lhs-~~iihrdlk~~nill~~~~~~kl~dfgla~   36 (93)
                      +.|+|. .+++|+++.|.+|.++.++.+|+..|+++.
T Consensus       112 l~flh~sAk~VH~ni~p~~i~~na~~~wkl~Gf~f~v  148 (700)
T KOG2137|consen  112 LAFLHRSAKVVHGNIQPEAIVVNANGDWKLAGFSFCV  148 (700)
T ss_pred             hhhhccCcceeecccchhheeeccCcceeeccchhhh
Confidence            357885 589999999999999999999999998754

>PLN02236 choline kinase

Probab=85.14  E-value=0.85  Score=33.08  Aligned_cols=33  Identities=27%  Similarity=0.555  Sum_probs=27.0

Q ss_pred             CCccccCCCCCceEEec-CCcEEEeecccccccc
Q psy700            7 RGILHKDLKSKNIFIEK-NNKVVITDFGLFNFSK   39 (93)
Q Consensus         7 ~~iihrdlk~~nill~~-~~~~kl~dfgla~~~~   39 (93)
                      ..++|.|+.+.||+++. +..+.++||..+....
T Consensus       200 ~~~cH~Dl~~~Nil~~~~~~~~~lID~Eya~~~~  233 (344)
T PLN02236        200 IGFCHNDLQYGNIMIDEETRAITIIDYEYASYNP  233 (344)
T ss_pred             ceEEeCCCCcCcEEEeCCCCcEEEEeehhccccc
Confidence            36899999999999975 4578999998876544

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=84.63  E-value=0.81  Score=35.40  Aligned_cols=32  Identities=28%  Similarity=0.643  Sum_probs=28.6

Q ss_pred             hCCccccCCCCCceEEecCCcEEEeecccccc
Q psy700            6 ARGILHKDLKSKNIFIEKNNKVVITDFGLFNF   37 (93)
Q Consensus         6 s~~iihrdlk~~nill~~~~~~kl~dfgla~~   37 (93)
                      ..|++|.|..|.|+++...+.+.+.|||+...
T Consensus       283 ~dgffHaDpHpGNi~v~~~g~i~~lDfGi~g~  314 (517)
T COG0661         283 RDGFFHADPHPGNILVRSDGRIVLLDFGIVGR  314 (517)
T ss_pred             hcCccccCCCccceEEecCCcEEEEcCcceec
Confidence            46899999999999999999999999998643

>TIGR02904 spore_ysxE spore coat protein YsxE

Probab=83.41  E-value=0.85  Score=32.27  Aligned_cols=33  Identities=12%  Similarity=0.252  Sum_probs=27.6

Q ss_pred             CCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            7 RGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         7 ~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      .+++|+|+.+.|++++.++.+.++||-.+.+..
T Consensus       196 ~~lcHgD~~~~Nvl~~~~~~~~iIDfd~~~~d~  228 (309)
T TIGR02904       196 TVLVHGKLSLSHFLYDETRGGYFINFEKASFAS  228 (309)
T ss_pred             eeeeCCCCcHHhEEEcCCCCEEEEEhhhcccCC
Confidence            379999999999999887778899998775543

Members of this family are homologs of the Bacillus subtilis spore coat protein CotS. Members of this family, designated YsxE, are found only in the family Bacillaceae, from among the endospore-forming members of the Firmicutes branch of the Bacteria. As a rule, the ysxE gene is found immediately downstream of spoVID, a gene necessary for spore coat assembly. The protein has been shown to be part of the spore coat.

>COG2334 Putative homoserine kinase type II (protein kinase fold) [General function prediction only]

Probab=83.03  E-value=1.1  Score=32.69  Aligned_cols=30  Identities=23%  Similarity=0.509  Sum_probs=25.5

Q ss_pred             ccccCCCCCceEEecCCc-EEEeeccccccc
Q psy700            9 ILHKDLKSKNIFIEKNNK-VVITDFGLFNFS   38 (93)
Q Consensus         9 iihrdlk~~nill~~~~~-~kl~dfgla~~~   38 (93)
                      +||.|+.+.||+++.... +.++||+-+...
T Consensus       199 iIH~D~~~~NVl~d~~~~~~g~iDFdDa~~~  229 (331)
T COG2334         199 IIHGDLHPDNVLFDDDTDVSGFIDFDDAGYG  229 (331)
T ss_pred             eeecCCCccceeEcCCCCeeeEEEccccccc
Confidence            899999999999987764 789999976543

>KOG0601|consensus

Probab=82.75  E-value=0.68  Score=35.91  Aligned_cols=37  Identities=27%  Similarity=0.492  Sum_probs=30.4

Q ss_pred             CccchhCCccccCCCCCceEEecC-CcEEEeecccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKN-NKVVITDFGLFNF   37 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~-~~~kl~dfgla~~   37 (93)
                      +.++|+..++|.|+++.||++.++ ...++.+|+++..
T Consensus       379 l~~i~s~~~~~~d~~psni~i~~~~~~~~~~~~~~~t~  416 (524)
T KOG0601|consen  379 LNVIHSKLFVHLDVKPSNILISNDGFFSKLGDFGCWTR  416 (524)
T ss_pred             cccccchhhhcccccccceeeccchhhhhccccccccc
Confidence            357888899999999999999875 6677888887643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	93
2y4i_B	319	Ksr2-Mek1 Heterodimer Length = 319		1e-11
3og7_A	289	B-Raf Kinase V600e Oncogenic Mutant In Complex With		3e-07
3c4c_A	280	B-Raf Kinase In Complex With Plx4720 Length = 280		3e-07
4fk3_A	292	B-Raf Kinase V600e Oncogenic Mutant In Complex With		4e-07
3omv_A	307	Crystal Structure Of C-Raf (Raf-1) Length = 307		3e-06
3d4q_A	307	Pyrazole-Based Inhibitors Of B-Raf Kinase Length =		4e-06
4dbn_A	284	Crystal Structure Of The Kinase Domain Of Human B-R		4e-06
4g9r_A	307	B-Raf V600e Kinase Domain Bound To A Type Ii Dihydr		4e-06
3ii5_A	306	The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimi		4e-06
2fb8_A	281	Structure Of The B-Raf Kinase Domain Bound To Sb-59		4e-06
3q96_A	282	B-Raf Kinase Domain In Complex With A Tetrahydronap		4e-06
3idp_A	300	B-Raf V600e Kinase Domain In Complex With An Aminoi		5e-06
1uwh_A	276	The Complex Of Wild Type B-Raf And Bay439006 Length		1e-05
4h58_A	275	Braf In Complex With Compound 3 Length = 275		1e-05
1uwj_A	276	The Complex Of Mutant V599e B-raf And Bay439006 Len		1e-05
2r5t_A	373	Crystal Structure Of Inactive Serum And Glucocortic		1e-05
1zyc_A	303	Crystal Structure Of Eif2alpha Protein Kinase Gcn2:		1e-05
1zy4_A	303	Crystal Structure Of Eif2alpha Protein Kinase Gcn2:		1e-05
3s95_A	310	Crystal Structure Of The Human Limk1 Kinase Domain		2e-05
1h4l_A	292	Structure And Regulation Of The Cdk5-P25(Nck5a) Com		4e-05
1zxe_A	303	Crystal Structure Of Eif2alpha Protein Kinase Gcn2:		6e-05
3orx_A	316	Pdk1 Mutant Bound To Allosteric Disulfide Fragment		6e-05
3qc4_A	314	Pdk1 In Complex With Dfg-Out Inhibitor Xxx Length =		7e-05
3hrc_A	311	Crystal Structure Of A Mutant Of Human Pdk1 Kinase		7e-05
2jam_A	304	Crystal Structure Of Human Calmodulin-Dependent Pro		7e-05
2biy_A	310	Structure Of Pdk1-S241a Mutant Kinase Domain Length		7e-05
3iop_A	312	Pdk-1 In Complex With The Inhibitor Compound-8i Len		7e-05
3sc1_A	311	Novel Isoquinolone Pdk1 Inhibitors Discovered Throu		7e-05
2r7b_A	312	Crystal Structure Of The Phosphoinositide-Dependent		7e-05
1uu3_A	310	Structure Of Human Pdk1 Kinase Domain In Complex Wi		7e-05
4a07_A	311	Human Pdk1 Kinase Domain In Complex With Allosteric		7e-05
3rwp_A	311	Discovery Of A Novel, Potent And Selective Inhibito		7e-05
3h9o_A	311	Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1)		7e-05
2xck_A	309	Crystal Structure Of Pdk1 In Complex With A Pyrazol		8e-05
2xch_A	309	Crystal Structure Of Pdk1 In Complex With A Pyrazol		8e-05
3pwy_A	311	Crystal Structure Of An Extender (Spd28345)-Modifie		8e-05
1h1w_A	289	High Resolution Crystal Structure Of The Human Pdk1		9e-05
1uu9_A	286	Structure Of Human Pdk1 Kinase Domain In Complex Wi		9e-05
3nun_A	292	Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lea		1e-04
3nus_A	286	Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fra		1e-04
1z5m_A	286	Crystal Structure Of N1-[3-[[5-bromo-2-[[3-[(1-pyrr		1e-04
3nay_A	311	Pdk1 In Complex With Inhibitor Mp6 Length = 311		1e-04
3nax_A	311	Pdk1 In Complex With Inhibitor Mp7 Length = 311		1e-04
1fot_A	318	Structure Of The Unliganded Camp-Dependent Protein		1e-04
2c30_A	321	Crystal Structure Of The Human P21-Activated Kinase		1e-04
1ung_A	292	Structural Mechanism For The Inhibition Of Cdk5-P25		1e-04
3a60_A	327	Crystal Structure Of Unphosphorylated P70s6k1 (Form		1e-04
3a62_A	327	Crystal Structure Of Phosphorylated P70s6k1 Length		1e-04
4apc_A	350	Crystal Structure Of Human Nima-Related Kinase 1 (N		2e-04
1vzo_A	355	The Structure Of The N-Terminal Kinase Domain Of Ms		2e-04
3qd2_B	332	Crsytal Structure Of Mouse Perk Kinase Domain Lengt		2e-04
4g31_A	299	Crystal Structure Of Gsk6414 Bound To Perk (R587-R1		2e-04
2jdo_A	342	Structure Of Pkb-Beta (Akt2) Complexed With Isoquin		2e-04
3miy_A	266	X-Ray Crystal Structure Of Itk Complexed With Sunit		2e-04
2r4b_A	321	Erbb4 Kinase Domain Complexed With A Thienopyrimidi		2e-04
3bbt_B	328	Crystal Structure Of The Erbb4 Kinase In Complex Wi		2e-04
1o6l_A	337	Crystal Structure Of An Activated Akt/protein Kinas		3e-04
4hct_A	269	Crystal Structure Of Itk In Complex With Compound 5		3e-04
3v5j_A	266	Crystal Structure Of Interleukin-2 Inducible T-Cell		3e-04
3t9t_A	267	Crystal Structure Of Btk Mutant (F435t,K596r) Compl		3e-04
1sm2_A	264	Crystal Structure Of The Phosphorylated Interleukin		3e-04
3cok_A	278	Crystal Structure Of Plk4 Kinase Length = 278		3e-04
3hgk_A	327	Crystal Structure Of Effect Protein Avrptob Complex		3e-04
2qkw_B	321	Structural Basis For Activation Of Plant Immunity B		3e-04
1mrv_A	339	Crystal Structure Of An Inactive Akt2 Kinase Domain		3e-04
1gzk_A	315	Molecular Mechanism For The Regulation Of Protein K		3e-04
1o6k_A	336	Structure Of Activated Form Of Pkb Kinase Domain S4		3e-04
3e87_A	335	Crystal Structures Of The Kinase Domain Of Akt2 In		3e-04
1gzn_A	335	Structure Of Pkb Kinase Domain Length = 335		3e-04
2y7j_A	365	Structure Of Human Phosphorylase Kinase, Gamma 2 Le		3e-04
2hw6_A	307	Crystal Structure Of Mnk1 Catalytic Domain Length =		4e-04
4hvd_A	314	Jak3 Kinase Domain In Complex With 2-cyclopropyl-5h		4e-04
3pjc_A	315	Crystal Structure Of Jak3 Complexed With A Potent A		4e-04
3lxk_A	327	Structural And Thermodynamic Characterization Of Th		4e-04
3gc9_A	370	The Structure Of P38beta C119s, C162s In Complex Wi		4e-04
3gc8_A	370	The Structure Of P38beta C162s In Complex With A Di		4e-04
3lxn_A	318	Structural And Thermodynamic Characterization Of Th		4e-04
3ppz_A	309	Crystal Structure Of Ctr1 Kinase Domain In Complex		5e-04
1v0b_A	288	Crystal Structure Of The T198a Mutant Of Pfpk5 Leng		5e-04
1v0o_A	288	Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulpho		5e-04
1ob3_A	288	Structure Of P. Falciparum Pfpk5 Length = 288		5e-04
4fg9_A	320	Crystal Structure Of Human Calcium/calmodulin-depen		5e-04
4fg8_A	315	Crystal Structure Of Human Calcium/calmodulin-depen		5e-04
4fg7_A	293	Crystal Structure Of Human Calcium/calmodulin-depen		5e-04
1a06_A	332	Calmodulin-Dependent Protein Kinase From Rat Length		5e-04
2jed_A	352	The Crystal Structure Of The Kinase Domain Of The P		5e-04
3hng_A	360	Crystal Structure Of Vegfr1 In Complex With N-(4-ch		5e-04
2f57_A	317	Crystal Structure Of The Human P21-activated Kinase		5e-04
2br1_A	297	Structure-Based Design Of Novel Chk1 Inhibitors: In		6e-04
1ia8_A	289	The 1.7 A Crystal Structure Of Human Cell Cycle Che		6e-04
1zlt_A	295	Crystal Structure Of Chk1 Complexed With A Hymenald		6e-04
3lpb_A	295	Crystal Structure Of Jak2 Complexed With A Potent 2		8e-04
3ugc_A	295	Structural Basis Of Jak2 Inhibition By The Type Ii		8e-04
1xjd_A	345	Crystal Structure Of Pkc-Theta Complexed With Staur		8e-04
4e4l_A	302	Jak1 Kinase (Jh1 Domain) In Complex With Compound 3		8e-04
3eyg_A	290	Crystal Structures Of Jak1 And Jak2 Inhibitor Compl		8e-04
3jy9_A	311	Janus Kinase 2 Inhibitors Length = 311		8e-04
2bva_A	292	Crystal Structure Of The Human P21-Activated Kinase		8e-04
4fif_A	346	Catalytic Domain Of Human Pak4 With Rpkplvdp Peptid		8e-04
4fie_A	423	Full-Length Human Pak4 Length = 423		8e-04
2x4z_A	296	Crystal Structure Of The Human P21-Activated Kinase		8e-04
2q0n_A	301	Structure Of Human P21 Activating Kinase 4 (Pak4) I		8e-04
2cdz_A	303	Crystal Structure Of The Human P21-Activated Kinase		8e-04
2r0u_A	323	Crystal Structure Of Chek1 In Complex With Inhibito		8e-04
2hog_A	322	Crystal Structure Of Chek1 In Complex With Inhibito		8e-04

>pdb|2Y4I|B Chain B, Ksr2-Mek1 Heterodimer Length = 319

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/49 (63%), Positives = 38/49 (77%), Gaps = 1/49 (2%)
Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEK 49
           MGYLHA+GILHKDLKSKN+F + N KVVITDFGLF+ S +  +    +K
Sbjct: 143 MGYLHAKGILHKDLKSKNVFYD-NGKVVITDFGLFSISGVLQAGRREDK 190

>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx4032 Length = 289

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/34 (61%), Positives = 27/34 (79%)
Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           M YLHA+ I+H+DLKS NIF+ ++N V I DFGL
Sbjct: 133 MDYLHAKSIIHRDLKSNNIFLHEDNTVKIGDFGL 166

>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720 Length = 280

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/34 (61%), Positives = 27/34 (79%)
Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           M YLHA+ I+H+DLKS NIF+ ++N V I DFGL
Sbjct: 121 MDYLHAKSIIHRDLKSNNIFLHEDNTVKIGDFGL 154

>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx3203 Length = 292

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/34 (61%), Positives = 27/34 (79%)
Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           M YLHA+ I+H+DLKS NIF+ ++N V I DFGL
Sbjct: 133 MDYLHAKSIIHRDLKSNNIFLHEDNTVKIGDFGL 166

>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1) Length = 307

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 31/51 (60%)
Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPS 51
           M YLHA+ I+H+D+KS NIF+ +   V I DFGL      ++     E+P+
Sbjct: 145 MDYLHAKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGSQQVEQPT 195

>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase Length = 307

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/34 (58%), Positives = 26/34 (76%)
Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           M YLHA+ I+H+DLKS NIF+ ++  V I DFGL
Sbjct: 145 MDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGL 178

>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With A [1, 3]thiazolo[5,4-B]pyridine Derivative Length = 284

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/34 (58%), Positives = 26/34 (76%)
Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           M YLHA+ I+H+DLKS NIF+ ++  V I DFGL
Sbjct: 122 MDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGL 155

>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii Dihydroquinazoline Inhibitor Length = 307

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/34 (58%), Positives = 26/34 (76%)
Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           M YLHA+ I+H+DLKS NIF+ ++  V I DFGL
Sbjct: 145 MDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGL 178

>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine Inhibitor Length = 306

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/34 (58%), Positives = 26/34 (76%)
Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           M YLHA+ I+H+DLKS NIF+ ++  V I DFGL
Sbjct: 144 MDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGL 177

>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885 Length = 281

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/34 (58%), Positives = 26/34 (76%)
Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           M YLHA+ I+H+DLKS NIF+ ++  V I DFGL
Sbjct: 122 MDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGL 155

>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A Tetrahydronaphthalene Inhibitor Length = 282

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/34 (58%), Positives = 26/34 (76%)
Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           M YLHA+ I+H+DLKS NIF+ ++  V I DFGL
Sbjct: 119 MDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGL 152

>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An Aminoisoquinoline Inhibitor Length = 300

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/34 (58%), Positives = 26/34 (76%)
Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           M YLHA+ I+H+DLKS NIF+ ++  V I DFGL
Sbjct: 137 MDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGL 170

>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006 Length = 276

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 20/34 (58%), Positives = 26/34 (76%)
Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           M YLHA+ I+H+DLKS NIF+ ++  V I DFGL
Sbjct: 117 MDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGL 150

>pdb|4H58|A Chain A, Braf In Complex With Compound 3 Length = 275

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 20/34 (58%), Positives = 26/34 (76%)
Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           M YLHA+ I+H+DLKS NIF+ ++  V I DFGL
Sbjct: 117 MDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGL 150

>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006 Length = 276

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 20/34 (58%), Positives = 26/34 (76%)
Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           M YLHA+ I+H+DLKS NIF+ ++  V I DFGL
Sbjct: 117 MDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGL 150

>pdb|2R5T|A Chain A, Crystal Structure Of Inactive Serum And Glucocorticoid- Regulated Kinase 1 In Complex With Amp-Pnp Length = 373

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 32/47 (68%)
Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSN 47
           +GYLH+  I+++DLK +NI ++    +V+TDFGL   +  +NS TS 
Sbjct: 152 LGYLHSLNIVYRDLKPENILLDSQGHIVLTDFGLCKENIEHNSTTST 198

>pdb|1ZYC|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild- Type In Apo Form. Length = 303

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 27/34 (79%)
Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           + Y+H++GI+H+DLK  NIFI+++  V I DFGL
Sbjct: 129 LSYIHSQGIIHRDLKPMNIFIDESRNVKIGDFGL 162

>pdb|1ZY4|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g Hyperactivating Mutant In Apo Form. Length = 303

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 27/34 (79%)
Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           + Y+H++GI+H+DLK  NIFI+++  V I DFGL
Sbjct: 129 LSYIHSQGIIHRDLKPMNIFIDESRNVKIGDFGL 162

>pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In Complex With Staurosporine Length = 310

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           M YLH+  I+H+DL S N  + +N  VV+ DFGL
Sbjct: 121 MAYLHSMNIIHRDLNSHNCLVRENKNVVVADFGL 154

>pdb|1H4L|A Chain A, Structure And Regulation Of The Cdk5-P25(Nck5a) Complex Length = 292

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 26/34 (76%)
Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           +G+ H+R +LH+DLK +N+ I +N ++ + DFGL
Sbjct: 114 LGFCHSRNVLHRDLKPQNLLINRNGELKLADFGL 147

>pdb|1ZXE|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n Inactivating Mutant In Apo Form Length = 303

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 27/34 (79%)
Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           + Y+H++GI+H++LK  NIFI+++  V I DFGL
Sbjct: 129 LSYIHSQGIIHRNLKPXNIFIDESRNVKIGDFGL 162

>pdb|3ORX|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment Inhibitor 1f8 Length = 316

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFG 33
           YLH +GI+H+DLK +NI + ++  + ITDFG
Sbjct: 152 YLHGKGIIHRDLKPENILLNEDMHIQITDFG 182

>pdb|3QC4|A Chain A, Pdk1 In Complex With Dfg-Out Inhibitor Xxx Length = 314

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFG 33
           YLH +GI+H+DLK +NI + ++  + ITDFG
Sbjct: 150 YLHGKGIIHRDLKPENILLNEDMHIQITDFG 180

>pdb|3HRC|A Chain A, Crystal Structure Of A Mutant Of Human Pdk1 Kinase Domain In Complex With Atp Length = 311

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFG 33
           YLH +GI+H+DLK +NI + ++  + ITDFG
Sbjct: 147 YLHGKGIIHRDLKPENILLNEDMHIQITDFG 177

>pdb|2JAM|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein Kinase I G Length = 304

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 19/35 (54%), Positives = 27/35 (77%), Gaps = 3/35 (8%)
Query: 3   YLHARGILHKDLKSKNIFI---EKNNKVVITDFGL 34
           YLH  GI+H+DLK +N+     E+N+K++ITDFGL
Sbjct: 121 YLHENGIVHRDLKPENLLYLTPEENSKIMITDFGL 155

>pdb|2BIY|A Chain A, Structure Of Pdk1-S241a Mutant Kinase Domain Length = 310

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFG 33
           YLH +GI+H+DLK +NI + ++  + ITDFG
Sbjct: 145 YLHGKGIIHRDLKPENILLNEDMHIQITDFG 175

>pdb|3IOP|A Chain A, Pdk-1 In Complex With The Inhibitor Compound-8i Length = 312

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFG 33
           YLH +GI+H+DLK +NI + ++  + ITDFG
Sbjct: 148 YLHGKGIIHRDLKPENILLNEDMHIQITDFG 178

>pdb|3SC1|A Chain A, Novel Isoquinolone Pdk1 Inhibitors Discovered Through Fragment-Based Lead Discovery Length = 311

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFG 33
           YLH +GI+H+DLK +NI + ++  + ITDFG
Sbjct: 147 YLHGKGIIHRDLKPENILLNEDMHIQITDFG 177

>pdb|2R7B|A Chain A, Crystal Structure Of The Phosphoinositide-Dependent Kinase- 1 (Pdk-1)catalytic Domain Bound To A Dibenzonaphthyridine Inhibitor Length = 312

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFG 33
           YLH +GI+H+DLK +NI + ++  + ITDFG
Sbjct: 148 YLHGKGIIHRDLKPENILLNEDMHIQITDFG 178

>pdb|1UU3|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With Ly333531 Length = 310

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFG 33
           YLH +GI+H+DLK +NI + ++  + ITDFG
Sbjct: 145 YLHGKGIIHRDLKPENILLNEDMHIQITDFG 175

>pdb|4A07|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric Activator Ps171 Bound To The Pif-Pocket Length = 311

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFG 33
           YLH +GI+H+DLK +NI + ++  + ITDFG
Sbjct: 147 YLHGKGIIHRDLKPENILLNEDMHIQITDFG 177

>pdb|3RWP|A Chain A, Discovery Of A Novel, Potent And Selective Inhibitor Of 3- Phosphoinositide Dependent Kinase (Pdk1) Length = 311

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFG 33
           YLH +GI+H+DLK +NI + ++  + ITDFG
Sbjct: 147 YLHGKGIIHRDLKPENILLNEDMHIQITDFG 177

>pdb|3H9O|A Chain A, Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1) In Complex With Compound 9 Length = 311

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFG 33
           YLH +GI+H+DLK +NI + ++  + ITDFG
Sbjct: 147 YLHGKGIIHRDLKPENILLNEDMHIQITDFG 177

>pdb|2XCK|A Chain A, Crystal Structure Of Pdk1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 309

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFG 33
           YLH +GI+H+DLK +NI + ++  + ITDFG
Sbjct: 145 YLHGKGIIHRDLKPENILLNEDMHIQITDFG 175

>pdb|2XCH|A Chain A, Crystal Structure Of Pdk1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 309

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFG 33
           YLH +GI+H+DLK +NI + ++  + ITDFG
Sbjct: 145 YLHGKGIIHRDLKPENILLNEDMHIQITDFG 175

>pdb|3PWY|A Chain A, Crystal Structure Of An Extender (Spd28345)-Modified Human Pdk1 Complex 2 Length = 311

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFG 33
           YLH +GI+H+DLK +NI + ++  + ITDFG
Sbjct: 147 YLHGKGIIHRDLKPENILLNEDMHIQITDFG 177

>pdb|1H1W|A Chain A, High Resolution Crystal Structure Of The Human Pdk1 Catalytic Domain Length = 289

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFG 33
           YLH +GI+H+DLK +NI + ++  + ITDFG
Sbjct: 125 YLHGKGIIHRDLKPENILLNEDMHIQITDFG 155

>pdb|1UU9|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With Bim-3 Length = 286

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFG 33
           YLH +GI+H+DLK +NI + ++  + ITDFG
Sbjct: 124 YLHGKGIIHRDLKPENILLNEDMHIQITDFG 154

>pdb|3NUN|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lead Compound Length = 292

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFG 33
           YLH +GI+H+DLK +NI + ++  + ITDFG
Sbjct: 129 YLHGKGIIHRDLKPENILLNEDMHIQITDFG 159

>pdb|3NUS|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment8 Length = 286

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFG 33
           YLH +GI+H+DLK +NI + ++  + ITDFG
Sbjct: 123 YLHGKGIIHRDLKPENILLNEDMHIQITDFG 153

>pdb|1Z5M|A Chain A, Crystal Structure Of N1-[3-[[5-bromo-2-[[3-[(1-pyrrolidinylcarbonyl) Amino]phenyl]amino]-4-pyrimidinyl]amino]propyl]-2,2- Dimethylpropanediamide Complexed With Human Pdk1 Length = 286

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFG 33
           YLH +GI+H+DLK +NI + ++  + ITDFG
Sbjct: 122 YLHGKGIIHRDLKPENILLNEDMHIQITDFG 152

>pdb|3NAY|A Chain A, Pdk1 In Complex With Inhibitor Mp6 Length = 311

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFG 33
           YLH +GI+H+DLK +NI + ++  + ITDFG
Sbjct: 144 YLHGKGIIHRDLKPENILLNEDMHIQITDFG 174

>pdb|3NAX|A Chain A, Pdk1 In Complex With Inhibitor Mp7 Length = 311

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFG 33
           YLH +GI+H+DLK +NI + ++  + ITDFG
Sbjct: 144 YLHGKGIIHRDLKPENILLNEDMHIQITDFG 174

>pdb|1FOT|A Chain A, Structure Of The Unliganded Camp-Dependent Protein Kinase Catalytic Subunit From Saccharomyces Cerevisiae Length = 318

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 26/34 (76%)
Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           + YLH++ I+++DLK +NI ++KN  + ITDFG 
Sbjct: 119 LEYLHSKDIIYRDLKPENILLDKNGHIKITDFGF 152

>pdb|2C30|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 6 Length = 321

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 26/34 (76%)
Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           + YLHA+G++H+D+KS +I +  + +V ++DFG 
Sbjct: 154 LAYLHAQGVIHRDIKSDSILLTLDGRVKLSDFGF 187

>pdb|1UNG|A Chain A, Structural Mechanism For The Inhibition Of Cdk5-P25 By Roscovitine, Aloisine And Indirubin. Length = 292

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 26/34 (76%)
Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           +G+ H+R +LH+DLK +N+ I +N ++ + +FGL
Sbjct: 114 LGFCHSRNVLHRDLKPQNLLINRNGELKLANFGL 147

>pdb|3A60|A Chain A, Crystal Structure Of Unphosphorylated P70s6k1 (Form I) Length = 327

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           +G+LH +GI+++DLK +NI +     V +TDFGL
Sbjct: 134 LGHLHQKGIIYRDLKPENIMLNHQGHVKLTDFGL 167

>pdb|3A62|A Chain A, Crystal Structure Of Phosphorylated P70s6k1 Length = 327

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           +G+LH +GI+++DLK +NI +     V +TDFGL
Sbjct: 134 LGHLHQKGIIYRDLKPENIMLNHQGHVKLTDFGL 167

>pdb|4APC|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1) Length = 350

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 26/34 (76%)
Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           + ++H R ILH+D+KS+NIF+ K+  V + DFG+
Sbjct: 138 LKHVHDRKILHRDIKSQNIFLTKDGTVQLGDFGI 171

>pdb|1VZO|A Chain A, The Structure Of The N-Terminal Kinase Domain Of Msk1 Reveals A Novel Autoinhibitory Conformation For A Dual Kinase Protein Length = 355

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 25/32 (78%)
Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           +LH  GI+++D+K +NI ++ N  VV+TDFGL
Sbjct: 174 HLHKLGIIYRDIKLENILLDSNGHVVLTDFGL 205

>pdb|3QD2|B Chain B, Crsytal Structure Of Mouse Perk Kinase Domain Length = 332

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 24/32 (75%)
Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           +LH++G++H+DLK  NIF   ++ V + DFGL
Sbjct: 179 FLHSKGLMHRDLKPSNIFFTMDDVVKVGDFGL 210

>pdb|4G31|A Chain A, Crystal Structure Of Gsk6414 Bound To Perk (R587-R1092, Delete A660- T867) At 2.28 A Resolution Length = 299

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 24/32 (75%)
Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           +LH++G++H+DLK  NIF   ++ V + DFGL
Sbjct: 133 FLHSKGLMHRDLKPSNIFFTMDDVVKVGDFGL 164

>pdb|2JDO|A Chain A, Structure Of Pkb-Beta (Akt2) Complexed With Isoquinoline-5- Sulfonic Acid (2-(2-(4-Chlorobenzyloxy) Ethylamino)ethyl) Amide Length = 342

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 26/32 (81%)
Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           YLH+R ++++D+K +N+ ++K+  + ITDFGL
Sbjct: 125 YLHSRDVVYRDIKLENLMLDKDGHIKITDFGL 156

>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib Length = 266

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPL 54
           M YL    ++H+DL ++N  + +N  + ++DFG+  F  L + YTS+     P+
Sbjct: 116 MAYLEEASVIHRDLAARNCLVGENQVIKVSDFGMTRFV-LDDQYTSSTGTKFPV 168

>pdb|2R4B|A Chain A, Erbb4 Kinase Domain Complexed With A Thienopyrimidine Inhibitor Length = 321

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           M YL  R ++H+DL ++N+ ++  N V ITDFGL
Sbjct: 153 MMYLEERRLVHRDLAARNVLVKSPNHVKITDFGL 186

>pdb|3BBT|B Chain B, Crystal Structure Of The Erbb4 Kinase In Complex With Lapatinib Length = 328

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           M YL  R ++H+DL ++N+ ++  N V ITDFGL
Sbjct: 130 MMYLEERRLVHRDLAARNVLVKSPNHVKITDFGL 163

>pdb|1O6L|A Chain A, Crystal Structure Of An Activated Akt/protein Kinase B (pkb-pif Chimera) Ternary Complex With Amp-pnp And Gsk3 Peptide Length = 337

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 26/32 (81%)
Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           YLH+R ++++D+K +N+ ++K+  + ITDFGL
Sbjct: 120 YLHSRDVVYRDIKLENLMLDKDGHIKITDFGL 151

>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52 Length = 269

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPL 54
           M YL    ++H+DL ++N  + +N  + ++DFG+  F  L + YTS+     P+
Sbjct: 119 MAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFV-LDDQYTSSTGTKFPV 171

>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase Itk Catalytic Domain With Thienopyrazolylindole Inhibitor 090 Length = 266

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPL 54
           M YL    ++H+DL ++N  + +N  + ++DFG+  F  L + YTS+     P+
Sbjct: 116 MAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFV-LDDQYTSSTGTKFPV 168

>pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed With Imidazo[1,5-A]quinoxaline Length = 267

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPL 54
           M YL    ++H+DL ++N  + +N  + ++DFG+  F  L + YTS+     P+
Sbjct: 117 MAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFV-LDDQYTSSTGTKFPV 169

>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2 Tyrosine Kinase Catalytic Domain Length = 264

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPL 54
           M YL    ++H+DL ++N  + +N  + ++DFG+  F  L + YTS+     P+
Sbjct: 114 MAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFV-LDDQYTSSTGTKFPV 166

>pdb|3COK|A Chain A, Crystal Structure Of Plk4 Kinase Length = 278

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           M YLH+ GILH+DL   N+ + +N  + I DFGL
Sbjct: 125 MLYLHSHGILHRDLTLSNLLLTRNMNIKIADFGL 158

>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With Kinase Pto Length = 327

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           YLH R I+H+D+KS NI +++N    ITDFG+
Sbjct: 154 YLHTRAIIHRDVKSINILLDENFVPKITDFGI 185

>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By Bacterial Effector Protein Avrpto Length = 321

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           YLH R I+H+D+KS NI +++N    ITDFG+
Sbjct: 154 YLHTRAIIHRDVKSINILLDENFVPKITDFGI 185

>pdb|1MRV|A Chain A, Crystal Structure Of An Inactive Akt2 Kinase Domain Length = 339

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 26/32 (81%)
Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           YLH+R ++++D+K +N+ ++K+  + ITDFGL
Sbjct: 123 YLHSRDVVYRDIKLENLMLDKDGHIKITDFGL 154

>pdb|1GZK|A Chain A, Molecular Mechanism For The Regulation Of Protein Kinase B Akt By Hydrophobic Motif Phosphorylation Length = 315

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 26/32 (81%)
Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           YLH+R ++++D+K +N+ ++K+  + ITDFGL
Sbjct: 120 YLHSRDVVYRDIKLENLMLDKDGHIKITDFGL 151

>pdb|1O6K|A Chain A, Structure Of Activated Form Of Pkb Kinase Domain S474d With Gsk3 Peptide And Amp-Pnp Length = 336

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 26/32 (81%)
Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           YLH+R ++++D+K +N+ ++K+  + ITDFGL
Sbjct: 120 YLHSRDVVYRDIKLENLMLDKDGHIKITDFGL 151

>pdb|3E87|A Chain A, Crystal Structures Of The Kinase Domain Of Akt2 In Complex With Atp- Competitive Inhibitors Length = 335

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 26/32 (81%)
Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           YLH+R ++++D+K +N+ ++K+  + ITDFGL
Sbjct: 120 YLHSRDVVYRDIKLENLMLDKDGHIKITDFGL 151

>pdb|1GZN|A Chain A, Structure Of Pkb Kinase Domain Length = 335

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 26/32 (81%)
Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           YLH+R ++++D+K +N+ ++K+  + ITDFGL
Sbjct: 120 YLHSRDVVYRDIKLENLMLDKDGHIKITDFGL 151

>pdb|2Y7J|A Chain A, Structure Of Human Phosphorylase Kinase, Gamma 2 Length = 365

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 25/34 (73%)
Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           + +LHA  I+H+DLK +NI ++ N ++ ++DFG 
Sbjct: 213 VSFLHANNIVHRDLKPENILLDDNMQIRLSDFGF 246

>pdb|2HW6|A Chain A, Crystal Structure Of Mnk1 Catalytic Domain Length = 307

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVV---ITDFGLFNFSKLYNSYTSNEKP 50
           + +LH +GI H+DLK +NI  E   KV    I DF L +  KL NS T    P
Sbjct: 124 LDFLHTKGIAHRDLKPENILCESPEKVSPVKICDFDLGSGMKLNNSCTPITTP 176

>pdb|4HVD|A Chain A, Jak3 Kinase Domain In Complex With 2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic Acid ((s)-1,2,2-trimethyl-propyl)-amide Length = 314

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKP-SSPL 54
           M YL +R  +H+DL ++NI +E    V I DFGL     L   Y    +P  SP+
Sbjct: 127 MEYLGSRRCVHRDLAARNILVESEAHVKIADFGLAKLLPLDKDYYVVREPGQSPI 181

>pdb|3PJC|A Chain A, Crystal Structure Of Jak3 Complexed With A Potent Atp Site Inhibitor Showing High Selectivity Within The Janus Kinase Family Length = 315

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKP-SSPL 54
           M YL +R  +H+DL ++NI +E    V I DFGL     L   Y    +P  SP+
Sbjct: 128 MEYLGSRRCVHRDLAARNILVESEAHVKIADFGLAKLLPLDKDYYVVREPGQSPI 182

>pdb|3LXK|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2 And Jak3 Kinase Domains In Complex With Cp-690550 And Cmp-6 Length = 327

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKP-SSPL 54
           M YL +R  +H+DL ++NI +E    V I DFGL     L   Y    +P  SP+
Sbjct: 140 MEYLGSRRCVHRDLAARNILVESEAHVKIADFGLAKLLPLDKDYYVVREPGQSPI 194

>pdb|3GC9|A Chain A, The Structure Of P38beta C119s, C162s In Complex With A Dihydroquinazolinone Inhibitor Length = 370

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 26/34 (76%)
Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           + Y+H+ GI+H+DLK  N+ + +++++ I DFGL
Sbjct: 144 LKYIHSAGIIHRDLKPSNVAVNEDSELRILDFGL 177

>pdb|3GC8|A Chain A, The Structure Of P38beta C162s In Complex With A Dihydroquinazolinone Length = 370

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 26/34 (76%)
Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           + Y+H+ GI+H+DLK  N+ + +++++ I DFGL
Sbjct: 144 LKYIHSAGIIHRDLKPSNVAVNEDSELRILDFGL 177

>pdb|3LXN|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2 And Jak3 Kinase Domains In Complex With Cp-690550 And Cmp-6 Length = 318

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFN-FSKLYNSYTSNEKPSSPL 54
           M YLHA+  +H+DL ++N+ ++ +  V I DFGL     + +  Y   E   SP+
Sbjct: 147 MAYLHAQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEXYRVREDGDSPV 201

>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/36 (50%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 1   MGYLHARG--ILHKDLKSKNIFIEKNNKVVITDFGL 34
           M YLH R   I+H+DLKS N+ ++K   V + DFGL
Sbjct: 150 MNYLHNRNPPIVHRDLKSPNLLVDKKYTVKVCDFGL 185

>pdb|1V0B|A Chain A, Crystal Structure Of The T198a Mutant Of Pfpk5 Length = 288

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           + Y H R +LH+DLK +N+ I +  ++ I DFGL
Sbjct: 113 IAYCHDRRVLHRDLKPQNLLINREGELKIADFGL 146

>pdb|1V0O|A Chain A, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate Ligand Complex Length = 288

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           + Y H R +LH+DLK +N+ I +  ++ I DFGL
Sbjct: 113 IAYCHDRRVLHRDLKPQNLLINREGELKIADFGL 146

>pdb|1OB3|A Chain A, Structure Of P. Falciparum Pfpk5 Length = 288

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           + Y H R +LH+DLK +N+ I +  ++ I DFGL
Sbjct: 113 IAYCHDRRVLHRDLKPQNLLINREGELKIADFGL 146

>pdb|4FG9|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-320 In Complex With Atp Length = 320

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/35 (45%), Positives = 28/35 (80%), Gaps = 3/35 (8%)
Query: 3   YLHARGILHKDLKSKNIF---IEKNNKVVITDFGL 34
           YLH  GI+H+DLK +N+    +++++K++I+DFGL
Sbjct: 131 YLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGL 165

>pdb|4FG8|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-315 In Complex With Atp Length = 315

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/35 (45%), Positives = 28/35 (80%), Gaps = 3/35 (8%)
Query: 3   YLHARGILHKDLKSKNIF---IEKNNKVVITDFGL 34
           YLH  GI+H+DLK +N+    +++++K++I+DFGL
Sbjct: 131 YLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGL 165

>pdb|4FG7|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-293 In Complex With Atp Length = 293

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/35 (45%), Positives = 28/35 (80%), Gaps = 3/35 (8%)
Query: 3   YLHARGILHKDLKSKNIF---IEKNNKVVITDFGL 34
           YLH  GI+H+DLK +N+    +++++K++I+DFGL
Sbjct: 131 YLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGL 165

>pdb|1A06|A Chain A, Calmodulin-Dependent Protein Kinase From Rat Length = 332

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/35 (45%), Positives = 28/35 (80%), Gaps = 3/35 (8%)
Query: 3   YLHARGILHKDLKSKNIF---IEKNNKVVITDFGL 34
           YLH  GI+H+DLK +N+    +++++K++I+DFGL
Sbjct: 131 YLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGL 165

>pdb|2JED|A Chain A, The Crystal Structure Of The Kinase Domain Of The Protein Kinase C Theta In Complex With Nvp-Xaa228 At 2.32a Resolution. Length = 352

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSP 53
           + +LH++GI+++DLK  NI ++K+  + I DFG+   + L ++ T NE   +P
Sbjct: 132 LQFLHSKGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKT-NEFCGTP 183

>pdb|3HNG|A Chain A, Crystal Structure Of Vegfr1 In Complex With N-(4-chlorophenyl)-2- ((pyridin-4-ylmethyl)amino)benzamide Length = 360

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           M +L +R  +H+DL ++NI + +NN V I DFGL
Sbjct: 212 MEFLSSRKCIHRDLAARNILLSENNVVKICDFGL 245

>pdb|2F57|A Chain A, Crystal Structure Of The Human P21-activated Kinase 5 Length = 317

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 25/34 (73%)
Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           + YLH +G++H+D+KS +I +  + ++ ++DFG 
Sbjct: 154 LSYLHNQGVIHRDIKSDSILLTSDGRIKLSDFGF 187

>pdb|2BR1|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights Into Hydrogen Bonding And Protein-Ligand Affinity Length = 297

Iteration: 1
 Score = 38.9 bits (89), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 24/32 (75%)
Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           YLH  GI H+D+K +N+ +++ + + I+DFGL
Sbjct: 120 YLHGIGITHRDIKPENLLLDERDNLKISDFGL 151

>pdb|1IA8|A Chain A, The 1.7 A Crystal Structure Of Human Cell Cycle Checkpoint Kinase Chk1 Length = 289

Iteration: 1
 Score = 38.9 bits (89), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 24/32 (75%)
Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           YLH  GI H+D+K +N+ +++ + + I+DFGL
Sbjct: 120 YLHGIGITHRDIKPENLLLDERDNLKISDFGL 151

>pdb|1ZLT|A Chain A, Crystal Structure Of Chk1 Complexed With A Hymenaldisine Analog Length = 295

Iteration: 1
 Score = 38.9 bits (89), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 24/32 (75%)
Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           YLH  GI H+D+K +N+ +++ + + I+DFGL
Sbjct: 120 YLHGIGITHRDIKPENLLLDERDNLKISDFGL 151

>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent 2,8-Diaryl Quinoxaline Inhibitor Length = 295

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           M YL  +  +H+DL ++NI +E  N+V I DFGL
Sbjct: 127 MEYLGTKRYIHRDLATRNILVENENRVKIGDFGL 160

>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii Inhibtor Nvp-Bbt594 Length = 295

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           M YL  +  +H+DL ++NI +E  N+V I DFGL
Sbjct: 127 MEYLGTKRYIHRDLATRNILVENENRVKIGDFGL 160

>pdb|1XJD|A Chain A, Crystal Structure Of Pkc-Theta Complexed With Staurosporine At 2a Resolution Length = 345

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 14/34 (41%), Positives = 26/34 (76%)
Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           + +LH++GI+++DLK  NI ++K+  + I DFG+
Sbjct: 131 LQFLHSKGIVYRDLKLDNILLDKDGHIKIADFGM 164

>pdb|4E4L|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           M YL +R  +H+DL ++N+ +E  ++V I DFGL
Sbjct: 139 MDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGL 172

>pdb|3EYG|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes Length = 290

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           M YL +R  +H+DL ++N+ +E  ++V I DFGL
Sbjct: 127 MDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGL 160

>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors Length = 311

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           M YL  +  +H+DL ++NI +E  N+V I DFGL
Sbjct: 145 MEYLGTKRYIHRDLATRNILVENENRVKIGDFGL 178

>pdb|2BVA|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 Length = 292

Iteration: 1
 Score = 38.5 bits (88), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 25/34 (73%)
Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           +  LHA+G++H+D+KS +I +  + +V ++DFG 
Sbjct: 129 LSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGF 162

>pdb|4FIF|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide Length = 346

Iteration: 1
 Score = 38.5 bits (88), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 25/34 (73%)
Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           +  LHA+G++H+D+KS +I +  + +V ++DFG 
Sbjct: 183 LSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGF 216

>pdb|4FIE|A Chain A, Full-Length Human Pak4 Length = 423

Iteration: 1
 Score = 38.5 bits (88), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 25/34 (73%)
Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           +  LHA+G++H+D+KS +I +  + +V ++DFG 
Sbjct: 260 LSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGF 293

>pdb|2X4Z|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In Complex With Pf-03758309 Length = 296

Iteration: 1
 Score = 38.5 bits (88), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 25/34 (73%)
Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           +  LHA+G++H+D+KS +I +  + +V ++DFG 
Sbjct: 133 LSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGF 166

>pdb|2Q0N|A Chain A, Structure Of Human P21 Activating Kinase 4 (Pak4) In Complex With A Consensus Peptide Length = 301

Iteration: 1
 Score = 38.5 bits (88), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 25/34 (73%)
Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           +  LHA+G++H+D+KS +I +  + +V ++DFG 
Sbjct: 138 LSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGF 171

>pdb|2CDZ|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In Complex With Cgp74514a Length = 303

Iteration: 1
 Score = 38.5 bits (88), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 25/34 (73%)
Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           +  LHA+G++H+D+KS +I +  + +V ++DFG 
Sbjct: 140 LSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGF 173

>pdb|2R0U|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 54 Length = 323

Iteration: 1
 Score = 38.5 bits (88), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 24/32 (75%)
Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           YLH  GI H+D+K +N+ +++ + + I+DFGL
Sbjct: 120 YLHGIGITHRDIKPENLLLDERDNLKISDFGL 151

>pdb|2HOG|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 20 Length = 322

Iteration: 1
 Score = 38.5 bits (88), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 24/32 (75%)
Query: 3   YLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           YLH  GI H+D+K +N+ +++ + + I+DFGL
Sbjct: 119 YLHGIGITHRDIKPENLLLDERDNLKISDFGL 150

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	93
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.43
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	99.4
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	99.36
4aoj_A	329	High affinity nerve growth factor receptor; transf	99.36
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	99.34
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	99.34
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	99.32
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	99.3
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	99.3
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	99.29
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	99.29
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	99.27
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.26
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.24
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	99.22
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	99.22
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	99.15
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	99.14
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	99.12
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	99.12
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.11
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	99.04
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.03
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	99.03
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	99.0
3rp9_A	458	Mitogen-activated protein kinase; structural genom	99.0
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	98.99
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	98.99
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	98.98
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	98.97
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	98.97
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	98.97
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	98.96
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	98.96
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	98.95
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	98.95
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	98.95
3soc_A	322	Activin receptor type-2A; structural genomics cons	98.95
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	98.95
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	98.95
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	98.95
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	98.95
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	98.94
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	98.94
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	98.94
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	98.94
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	98.93
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	98.92
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	98.92
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	98.92
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	98.92
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	98.91
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	98.91
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	98.91
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	98.91
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	98.9
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	98.9
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	98.9
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	98.9
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	98.9
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	98.9
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	98.9
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	98.89
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	98.89
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	98.89
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	98.89
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	98.89
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	98.89
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	98.89
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	98.89
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	98.89
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	98.89
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	98.89
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	98.88
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	98.88
3o0g_A	292	Cell division protein kinase 5; kinase activator c	98.88
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	98.88
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	98.88
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	98.87
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	98.87
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	98.87
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	98.87
3niz_A	311	Rhodanese family protein; structural genomics, str	98.86
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	98.86
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	98.86
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	98.86
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	98.86
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	98.85
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	98.85
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	98.85
3q4u_A	301	Activin receptor type-1; structural genomics conso	98.85
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	98.85
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	98.85
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	98.85
3pls_A	298	Macrophage-stimulating protein receptor; protein k	98.85
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	98.84
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	98.84
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	98.84
3ork_A	311	Serine/threonine protein kinase; structural genomi	98.84
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	98.83
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	98.83
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	98.83
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	98.83
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	98.83
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	98.83
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	98.83
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	98.82
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	98.82
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	98.82
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	98.82
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	98.82
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	98.82
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	98.82
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	98.81
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	98.81
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	98.8
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	98.8
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	98.8
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	98.79
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	98.79
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	98.79
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	98.79
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	98.79
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	98.79
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	98.79
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	98.78
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	98.78
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	98.78
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	98.78
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	98.78
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	98.78
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	98.77
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	98.77
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	98.77
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	98.77
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	98.77
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	98.77
2a19_B	284	Interferon-induced, double-stranded RNA-activated	98.77
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	98.77
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	98.76
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	98.76
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	98.76
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	98.76
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	98.75
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	98.75
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	98.75
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	98.75
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	98.75
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	98.75
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	98.74
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	98.74
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	98.74
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	98.74
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	98.73
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	98.73
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	98.73
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	98.73
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	98.73
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	98.73
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	98.73
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	98.73
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	98.73
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	98.73
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	98.73
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	98.72
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	98.72
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	98.72
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	98.72
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	98.72
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	98.72
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	98.72
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	98.72
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	98.71
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	98.71
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	98.71
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	98.71
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	98.71
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	98.71
3fme_A	290	Dual specificity mitogen-activated protein kinase;	98.71
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	98.71
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	98.71
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	98.7
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	98.7
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	98.7
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	98.7
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	98.69
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	98.69
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	98.69
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	98.69
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	98.69
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	98.69
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	98.69
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	98.69
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	98.69
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	98.69
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	98.68
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	98.68
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	98.68
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	98.67
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	98.67
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	98.67
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.67
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	98.67
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	98.66
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	98.66
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	98.66
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	98.65
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	98.65
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	98.65
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	98.64
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	98.64
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	98.64
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	98.64
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	98.64
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	98.64
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	98.63
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	98.63
3an0_A	340	Dual specificity mitogen-activated protein kinase;	98.63
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	98.63
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	98.62
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	98.62
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	98.62
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	98.62
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	98.62
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	98.62
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	98.61
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	98.61
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	98.61
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	98.6
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	98.6
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	98.59
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	98.59
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	98.58
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	98.57
3aln_A	327	Dual specificity mitogen-activated protein kinase;	98.57
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	98.57
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	98.57
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	98.56
2dyl_A	318	Dual specificity mitogen-activated protein kinase	98.55
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	98.54
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	98.54
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	98.53
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	98.53
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	98.52
3bhy_A	283	Death-associated protein kinase 3; death associate	98.52
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	98.45
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	98.39
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	98.39
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	98.37
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	98.34
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	98.33
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	98.33
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	98.26
3uqc_A	286	Probable conserved transmembrane protein; structur	97.82
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	97.37
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	96.0
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	94.61
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	93.82
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	93.25
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	93.1
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	92.46
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	91.86
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	91.19
2ppq_A	322	HSK, HK, homoserine kinase; structural genomics, M	91.14
3csv_A	333	Aminoglycoside phosphotransferase; YP_614837.1, ph	90.37
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	90.32
3ats_A	357	Putative uncharacterized protein; hypothetical pro	90.3
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	90.21
3i1a_A	339	Spectinomycin phosphotransferase; protein kinase,	87.78
1zyl_A	328	Hypothetical protein YIHE; putative protein kinase	86.4
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	84.54
3dxq_A	301	Choline/ethanolamine kinase family protein; NP_106	83.88
3c5i_A	369	Choline kinase; choline, kinase, malaria, transfer	82.96
1nw1_A	429	Choline kinase (49.2 KD); phospholipid synthesis,	81.17

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=99.43  E-value=4.6e-14  Score=99.49  Aligned_cols=62  Identities=35%  Similarity=0.544  Sum_probs=42.0

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++|+||||+|.|||++.++.+||+|||+|+...............++.+|++||.-
T Consensus       145 L~yLH~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~GT~~ymAPE~l  206 (307)
T 3omv_A          145 MDYLHAKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGSQQVEQPTGSVLWMAPEVI  206 (307)
T ss_dssp             HHHHHHTTCBCSCCCSSSEEEETTEEEEECCCSSCBC------------CCCCTTSCCHHHH
T ss_pred             HHHHHHCCccCCccCHHHEEECCCCcEEEeeccCceecccCCcceeecccccCCCccCHHHh
Confidence            47999999999999999999999999999999999876544333333334455556555543

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=99.40  E-value=7.9e-14  Score=98.60  Aligned_cols=62  Identities=27%  Similarity=0.410  Sum_probs=46.8

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++|+||||||.|||++.++.+||+|||+|+...............++.+|++||.-
T Consensus       145 l~ylH~~~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~~~~~~~~~~~GTp~YmAPEvl  206 (311)
T 4aw0_A          145 LEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELL  206 (311)
T ss_dssp             HHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECCTTTTCCCBCCCCSCGGGCCHHHH
T ss_pred             HHHHHHCCCccCCCCHHHeEEcCCCCEEEEEcCCceecCCCCCcccccCcccCcccCCHHHH
Confidence            46999999999999999999999999999999999876543333333344455555555543

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=99.36  E-value=1.8e-13  Score=96.31  Aligned_cols=62  Identities=27%  Similarity=0.392  Sum_probs=48.6

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++||||++.|||++.++.+||+|||+|+...............+++.|++||.-
T Consensus       158 l~yLH~~~iiHRDLK~~NILl~~~~~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l  219 (308)
T 4gt4_A          158 MEYLSSHHVVHKDLATRNVLVYDKLNVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAI  219 (308)
T ss_dssp             HHHHHHTTCCCSCCSGGGEEECGGGCEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHH
T ss_pred             HHHHHhCCCCCCCccccceEECCCCCEEECCcccceeccCCCceeEecccccCCcccCHHHH
Confidence            46999999999999999999999999999999999876544434334444566667766654

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=99.36  E-value=1.6e-13  Score=97.30  Aligned_cols=62  Identities=24%  Similarity=0.299  Sum_probs=39.8

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++|+||||++.||+++.+..+||+|||+|+...............++++|++||.-
T Consensus       171 l~yLH~~~iiHRDLKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~  232 (329)
T 4aoj_A          171 MVYLAGLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESI  232 (329)
T ss_dssp             HHHHHHTTCCCSCCCGGGEEEETTTEEEECCCC----------------CCCCGGGCCHHHH
T ss_pred             HHHHhcCCeecccccHhhEEECCCCcEEEcccccceeccCCCcceecCcccccccccChhhh
Confidence            46999999999999999999999999999999999866544433334444566767777654

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=99.34  E-value=1.1e-13  Score=98.95  Aligned_cols=62  Identities=31%  Similarity=0.412  Sum_probs=48.5

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||++++|||||++.||+++.++.+||+|||+|+...............+|..|++||.-
T Consensus       198 l~yLH~~~iiHRDLK~~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l  259 (353)
T 4ase_A          198 MEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETI  259 (353)
T ss_dssp             HHHHHHTTCCCSCCSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHH
T ss_pred             HHhHhhCCeecCccCccceeeCCCCCEEECcchhhhhcccCCCceeeccccccccccCHHHH
Confidence            46999999999999999999999999999999999866544443334444566766666654

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=99.34  E-value=8.4e-14  Score=97.59  Aligned_cols=62  Identities=26%  Similarity=0.329  Sum_probs=48.5

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++||||++.||+++.+..+||+|||+|+...............++++|++||.-
T Consensus       141 l~yLH~~~iiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~  202 (299)
T 4asz_A          141 MVYLASQHFVHRDLATRNCLVGENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESI  202 (299)
T ss_dssp             HHHHHHTTCCCSCCSGGGEEECGGGCEEECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHH
T ss_pred             HHHHHhCCcccCccCHhhEEECCCCcEEECCcccceecCCCCceeecCceecChhhcCHHHH
Confidence            46999999999999999999999999999999999865544433334444566767777654

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=99.32  E-value=4.5e-13  Score=93.77  Aligned_cols=39  Identities=38%  Similarity=0.798  Sum_probs=33.5

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||+++|+||||||.||+++.++.+||+|||+|+...
T Consensus       131 l~ylH~~~IiHRDlKp~NILl~~~~~vKl~DFGla~~~~  169 (299)
T 4g31_A          131 VEFLHSKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMD  169 (299)
T ss_dssp             HHHHHHTTCCCCCCCGGGEEECTTCCEEECCCCCC----
T ss_pred             HHHHHHCcCccccCcHHHeEECCCCcEEEccCccceecC
Confidence            469999999999999999999999999999999997654

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=99.30  E-value=6.6e-13  Score=95.04  Aligned_cols=59  Identities=24%  Similarity=0.372  Sum_probs=43.9

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||+++|+||||||.|||++.++.+||+|||+|+.......  ......++.+|++||.
T Consensus       183 L~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~--~~~~~~GTp~YmAPEv  241 (346)
T 4fih_A          183 LSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVP--RRKSLVGTPYWMAPEL  241 (346)
T ss_dssp             HHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSSSC--CBCCCCSCGGGCCHHH
T ss_pred             HHHHHHCCcccccCCHHHEEECCCCCEEEecCcCceecCCCCC--cccccccCcCcCCHHH
Confidence            4699999999999999999999999999999999876543222  1222344555555554

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=99.30  E-value=7.3e-13  Score=93.26  Aligned_cols=60  Identities=27%  Similarity=0.341  Sum_probs=42.4

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++|+||||||.|||++.++.+||+|||+|+.......  ......++..|++||.-
T Consensus       139 L~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~--~~~~~~GT~~YmAPE~~  198 (304)
T 3ubd_A          139 LDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEK--KAYSFCGTVEYMAPEVV  198 (304)
T ss_dssp             HHHHHHTTCCCSSCCGGGEEECTTSCEEEESSEEEEC-----C--CCCSCCCCGGGCCHHHH
T ss_pred             HHHHHHCCCcCCCCCHHHeEEcCCCCEEecccccceeccCCCc--cccccccCcccCCHHHh
Confidence            4699999999999999999999999999999999975432221  12223345555555543

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=99.29  E-value=8.9e-13  Score=91.65  Aligned_cols=39  Identities=38%  Similarity=0.715  Sum_probs=33.5

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||+++|+||||||.||+++.++.+||+|||+|+...
T Consensus       125 l~ylH~~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~  163 (275)
T 3hyh_A          125 VEYCHRHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMT  163 (275)
T ss_dssp             HHHHHHTTCCCCCCCTTTEEECTTCCEEECCSSCC----
T ss_pred             HHHHHHCCcccccCChHHeEECCCCCEEEeecCCCeecC
Confidence            469999999999999999999999999999999997654

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=99.29  E-value=1.1e-12  Score=96.06  Aligned_cols=59  Identities=24%  Similarity=0.372  Sum_probs=43.8

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||+++|+|||||+.|||++.++.+||+|||+|+.......  ......++.+|++||.
T Consensus       260 L~ylH~~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~~--~~~~~~GTp~YmAPEv  318 (423)
T 4fie_A          260 LSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVP--RRKSLVGTPYWMAPEL  318 (423)
T ss_dssp             HHHHHHTTEECCCCSTTTEEECTTCCEEECCCTTCEECCSSCC--CBCCCEECTTTCCHHH
T ss_pred             HHHHHHCCeecccCCHHHEEEcCCCCEEEecCccceECCCCCc--cccccccCcCcCCHHH
Confidence            4799999999999999999999999999999999876543221  1222334455555554

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=99.27  E-value=9.8e-13  Score=93.79  Aligned_cols=62  Identities=23%  Similarity=0.315  Sum_probs=41.7

Q ss_pred             CccchhCCccccCCCCCceEEecCC-cEEEeeccccccccccCCC---CCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNN-KVVITDFGLFNFSKLYNSY---TSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~-~~kl~dfgla~~~~~~~~~---~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++|+||||||.|||++.++ .+||+|||+|+........   .......++.+|++||.-
T Consensus       163 L~ylH~~~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~  228 (336)
T 4g3f_A          163 LEYLHTRRILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLGKSLLTGDYIPGTETHMAPEVV  228 (336)
T ss_dssp             HHHHHTTTEECSCCCGGGEEECTTSCCEEECCCTTCEEC------------CCCCCCGGGCCHHHH
T ss_pred             HHHHHHCCceecccCHHHEEEeCCCCEEEEeeCCCCeEccCCCcccceecCCccccCccccCHHHH
Confidence            4799999999999999999999876 5999999999865433211   122233345555555543

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=99.26  E-value=1.8e-12  Score=90.62  Aligned_cols=38  Identities=45%  Similarity=0.788  Sum_probs=33.8

Q ss_pred             CccchhCC--ccccCCCCCceEEec-CCcEEEeeccccccc
Q psy700            1 MGYLHARG--ILHKDLKSKNIFIEK-NNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~--iihrdlk~~nill~~-~~~~kl~dfgla~~~   38 (93)
                      |.|||+++  |+||||||.|||++. ++.+||+|||+|+..
T Consensus       142 L~ylH~~~~~IiHRDlKp~NILl~~~~g~vKl~DFGla~~~  182 (290)
T 3fpq_A          142 LQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLK  182 (290)
T ss_dssp             HHHHHTSSSCCCCCCCCGGGEEESSTTSCEEECCTTGGGGC
T ss_pred             HHHHHHCCCCEEecccChhheeEECCCCCEEEEeCcCCEeC
Confidence            46999988  999999999999974 688999999999754

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=99.24  E-value=1.6e-12  Score=90.72  Aligned_cols=62  Identities=29%  Similarity=0.321  Sum_probs=43.0

Q ss_pred             CccchhC--------CccccCCCCCceEEecCCcEEEeeccccccccccCCCC--CCCCCCCCCCCChhhhh
Q psy700            1 MGYLHAR--------GILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYT--SNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~--------~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~--~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||++        +|+||||+|.|||++.++.+||+|||+|+.........  ......++.+|++||.-
T Consensus       113 l~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~~~GT~~ymAPE~l  184 (303)
T 3hmm_A          113 LAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVL  184 (303)
T ss_dssp             HHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEEEETTTTEESCC-----CCGGGCCHHHH
T ss_pred             HHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeCCCCccccCCCCceeeecccccccccccCHHHh
Confidence            3578866        89999999999999999999999999997655333221  22223455666666643

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=99.22  E-value=5.5e-12  Score=91.39  Aligned_cols=61  Identities=21%  Similarity=0.277  Sum_probs=43.3

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCC--CCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNS--YTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~--~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||+++|+||||||.||+++.++.+|++|||+|+.......  ........++.+|++||.
T Consensus       171 l~ylH~~~iiHRDlKP~NIl~~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~~~GT~~Y~APEv  233 (398)
T 4b99_A          171 LKYMHSAQVIHRDLKPSNLLVNENCELKIGDFGMARGLCTSPAEHQYFMTEYVATRWYRAPEL  233 (398)
T ss_dssp             HHHHHHTTCBCCCCCGGGEEECTTCCEEECCCTTCBCC-------CCCCCSSCCCCTTCCHHH
T ss_pred             HHHHHHCcCcCCCcCccccccCCCCCEEEeecceeeecccCccccccccccceeChHhcCHHH
Confidence            4699999999999999999999999999999999976532221  112223344555555554

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=99.22  E-value=5.4e-13  Score=95.64  Aligned_cols=39  Identities=41%  Similarity=0.740  Sum_probs=35.9

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||+++|+||||||.|||++.++.+||+|||+|+...
T Consensus       138 L~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~  176 (350)
T 4b9d_A          138 LKHVHDRKILHRDIKSQNIFLTKDGTVQLGDFGIARVLN  176 (350)
T ss_dssp             HHHHHHTTCEETTCCGGGEEECTTCCEEECSTTEESCCC
T ss_pred             HHHHHHCCeeeccCCHHHEEECCCCCEEEcccccceeec
Confidence            469999999999999999999999999999999997654

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=99.15  E-value=8.9e-12  Score=89.12  Aligned_cols=38  Identities=32%  Similarity=0.609  Sum_probs=34.1

Q ss_pred             CccchhCCccccCCCCCceEEecC-CcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKN-NKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~-~~~kl~dfgla~~~   38 (93)
                      |.|||+++|+||||||.||+++.+ +.++|+|||+|+..
T Consensus       130 l~ylH~~gIiHRDiKPeNiLl~~~~~~~kl~DFGla~~~  168 (361)
T 4f9c_A          130 LKRIHQFGIVHRDVKPSNFLYNRRLKKYALVDFGLAQGT  168 (361)
T ss_dssp             HHHHHHTTEECSCCSGGGEEEETTTTEEEECCCTTCEEC
T ss_pred             HHHHHHCCeEeCcCCHHHeEEeCCCCeEEECcCCCCccc
Confidence            469999999999999999999866 78999999999754

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=99.14  E-value=1.3e-11  Score=95.06  Aligned_cols=57  Identities=25%  Similarity=0.318  Sum_probs=43.0

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||+++|+||||||.|||++.++.+||+|||+|+......   ... ..++.+|++||.
T Consensus       305 L~yLH~~gIiHRDLKPeNILld~~G~vKL~DFGlA~~~~~~~---~~t-~~GTp~YmAPEv  361 (689)
T 3v5w_A          305 LEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKK---PHA-SVGTHGYMAPEV  361 (689)
T ss_dssp             HHHHHTTTEECCCCSGGGEEECTTSCEEECCCTTCEECSSCC---CCS-CCSCGGGCCHHH
T ss_pred             HHHHHHCCccccCCchHHeEEeCCCCEEecccceeeecCCCC---CCC-ccCCcCccCHHH
Confidence            469999999999999999999999999999999997654222   122 334445555553

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=99.12  E-value=1.9e-11  Score=85.99  Aligned_cols=62  Identities=21%  Similarity=0.208  Sum_probs=45.9

Q ss_pred             CccchhCCccccCCCCCceEEec-----------CCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEK-----------NNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~-----------~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||+|.||+++.           .+.++|+|||+|+...............++.+|++||.-
T Consensus       185 L~~lH~~~ivHrDiKp~NIll~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~  257 (365)
T 3e7e_A          185 IEQVHDCEIIHGDIKPDNFILGNGFLEQDDEDDLSAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEML  257 (365)
T ss_dssp             HHHHHTTTEECCCCSGGGEEECGGGTCC------CTTEEECCCTTCEEGGGSCTTEEECCSSCTTSCCCHHHH
T ss_pred             HHHHhhCCeecCCCCHHHEEecccccCccccccccCCEEEeeCchhhhhhccCCCceeeeecCCCCCCChHHh
Confidence            46899999999999999999988           789999999999754433322223334456666666654

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=99.12  E-value=3.7e-11  Score=83.35  Aligned_cols=62  Identities=21%  Similarity=0.405  Sum_probs=46.1

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||+|.||+++..+.++|+|||+++...............++.+|++|+.-
T Consensus       128 l~~lH~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~  189 (325)
T 3kex_A          128 MYYLEEHGMVHRNLAARNVLLKSPSQVQVADFGVADLLPPDDKQLLYSEAKTPIKWMALESI  189 (325)
T ss_dssp             HHHHHHTTCCCSCCSSTTEEESSSSCEEECSCSGGGGSCCCTTCCC-----CCTTTSCHHHH
T ss_pred             HHHHHhCCCCCCccchheEEECCCCeEEECCCCcccccCcccccccccCCCCcccccChHHh
Confidence            46899999999999999999999999999999999876544433334445566667777654

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.11  E-value=1.6e-12  Score=97.63  Aligned_cols=39  Identities=21%  Similarity=0.476  Sum_probs=35.8

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|+|++|||||||||.|||++.++.+||+|||+|+...
T Consensus       352 L~ylH~~GIIHRDIKPeNILL~~dg~vKL~DFGlAr~~~  390 (569)
T 4azs_A          352 LAALEKQGFWHDDVRPWNVMVDARQHARLIDFGSIVTTP  390 (569)
T ss_dssp             HHHHHHTTCEESCCCGGGEEECTTSCEEECCCTTEESCC
T ss_pred             HHHHHHCCceeccCchHhEEECCCCCEEEeecccCeeCC
Confidence            469999999999999999999999999999999987554

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=99.04  E-value=4.2e-11  Score=83.24  Aligned_cols=62  Identities=29%  Similarity=0.424  Sum_probs=44.6

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||+|.||+++.++.++|+|||+++...............++.+|++|+..
T Consensus       130 l~~LH~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aPE~~  191 (327)
T 3poz_A          130 MNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESI  191 (327)
T ss_dssp             HHHHHHTTCCCSCCCGGGEEEEETTEEEECCTTHHHHHTTTCC-------CCCGGGSCHHHH
T ss_pred             HHHHhhCCeeCCCCChheEEECCCCCEEEccCcceeEccCCcccccccCCCccccccChHHh
Confidence            46899999999999999999999999999999999766544333333333445566666654

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=99.03  E-value=9.5e-11  Score=83.16  Aligned_cols=62  Identities=27%  Similarity=0.426  Sum_probs=46.0

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||++.||+++.++.++|+|||+++................+..|++||.-
T Consensus       216 L~~LH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~  277 (370)
T 2psq_A          216 MEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEAL  277 (370)
T ss_dssp             HHHHHHTTEECSCCCGGGEEECTTCCEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHHH
T ss_pred             HHHHHhCCeeccccchhhEEECCCCCEEEccccCCcccCcccceecccCCCcccceECHhHh
Confidence            46899999999999999999999999999999998765433333223333345566666644

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=99.00  E-value=6.5e-11  Score=82.50  Aligned_cols=62  Identities=31%  Similarity=0.412  Sum_probs=45.9

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||+|.||+++.++.++|+|||++................++.+|++||..
T Consensus       206 L~~LH~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aPE~~  267 (359)
T 3vhe_A          206 MEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETI  267 (359)
T ss_dssp             HHHHHHTTCCCSCCSGGGEEECGGGCEEECCCGGGSCTTSCTTCEEC--CEECGGGCCHHHH
T ss_pred             HHHHHHCCcccCCCChhhEEEcCCCcEEEEeccceeeecccccchhccccCCCceeEChhhh
Confidence            46899999999999999999999999999999998765433333333333445667777654

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=99.00  E-value=1.7e-10  Score=83.51  Aligned_cols=39  Identities=38%  Similarity=0.721  Sum_probs=35.8

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||+.+|+|+||+|.||+++.++.++|+|||+++...
T Consensus       169 L~~LH~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~  207 (458)
T 3rp9_A          169 VKYVHSAGILHRDLKPANCLVNQDCSVKVCDFGLARTVD  207 (458)
T ss_dssp             HHHHHHTTCBCCCCCGGGEEECTTCCEEECCCTTCBCTT
T ss_pred             HHHHHhCCcCCCCCChhhEEECCCCCEeecccccchhcc
Confidence            468999999999999999999999999999999997654

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=98.99  E-value=9.5e-11  Score=81.64  Aligned_cols=62  Identities=29%  Similarity=0.424  Sum_probs=39.1

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||+|.||+++..+.++|+|||++................++..|++|+.-
T Consensus       130 L~~LH~~~ivH~Dikp~NIl~~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~  191 (327)
T 3lzb_A          130 MNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESI  191 (327)
T ss_dssp             HHHHHHTTCCCSCCCGGGEEEEETTEEEECCTTC----------------CCCGGGSCHHHH
T ss_pred             HHHHhhCCCcCCCCCHHHEEEcCCCCEEEccCcceeEccCccccccccCCCccccccCHHHH
Confidence            46899999999999999999999999999999998765433333333333345556666654

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=98.99  E-value=2.4e-10  Score=80.42  Aligned_cols=62  Identities=16%  Similarity=0.295  Sum_probs=44.7

Q ss_pred             CccchhCCccccCCCCCceEEe--cCCcEEEeeccccccccccCCCC-----CCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIE--KNNKVVITDFGLFNFSKLYNSYT-----SNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~--~~~~~kl~dfgla~~~~~~~~~~-----~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||+|.||+++  ..+.++|+|||+++.........     ......++..|++|+.-
T Consensus       165 l~~lH~~~iiHrDlkp~Nill~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  233 (364)
T 3op5_A          165 LEYIHEHEYVHGDIKASNLLLNYKNPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAH  233 (364)
T ss_dssp             HHHHHHTTEECCCCCGGGEEEESSCTTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHH
T ss_pred             HHHHHHCCeEEecCCHHHEEEecCCCCeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHh
Confidence            4689999999999999999998  77899999999997654322211     11223356666666654

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=98.98  E-value=1.9e-10  Score=80.37  Aligned_cols=61  Identities=23%  Similarity=0.346  Sum_probs=40.4

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||.++++|+||+|.||+++ ++.++|+|||++................++.+|++||.-
T Consensus       121 l~~lH~~~iiHrDikp~NIll~-~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~  181 (343)
T 3dbq_A          121 VHTIHQHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAI  181 (343)
T ss_dssp             HHHHHHTTCCCCCCCGGGEEEE-TTEEEECCCSSSCCC------------CCCCSSCCHHHH
T ss_pred             HHHHHhCCeecCCCCcceEEEE-CCcEEEeecccccccCcccccccCCCCcCCcCcCCHHHH
Confidence            4689999999999999999996 567999999998765433332222333455666666654

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=98.97  E-value=1.6e-10  Score=84.39  Aligned_cols=61  Identities=20%  Similarity=0.217  Sum_probs=44.8

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+.+++||||+|.||+++.++.++|+|||+++........... ...++.+|++||.-
T Consensus       188 L~~LH~~giiHrDLKp~NILl~~~g~vkL~DFGla~~~~~~~~~~~~-~~~GT~~Y~APE~l  248 (437)
T 4aw2_A          188 IDSVHQLHYVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGTVQSS-VAVGTPDYISPEIL  248 (437)
T ss_dssp             HHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECCTTSCEECC-SCCSCGGGCCHHHH
T ss_pred             HHHHHhCCeEecccCHHHeeEcCCCCEEEcchhhhhhcccCCCcccc-cccCCcCeeChHHH
Confidence            46899999999999999999999999999999998655433322222 23345566666544

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=98.97  E-value=1.9e-10  Score=78.53  Aligned_cols=62  Identities=29%  Similarity=0.410  Sum_probs=46.0

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||+|.||+++.++.++|+|||++................++..|.+|+..
T Consensus       163 l~~lH~~~ivH~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  224 (314)
T 2ivs_A          163 MQYLAEMKLVHRDLAARNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESL  224 (314)
T ss_dssp             HHHHHHTTEECCCCSGGGEEEETTTEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHHH
T ss_pred             HHHHHHCCCcccccchheEEEcCCCCEEEccccccccccccccceeccCCCCcccccChhhh
Confidence            46899999999999999999999999999999998765433333233333345556666654

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=98.97  E-value=1.3e-10  Score=80.00  Aligned_cols=62  Identities=26%  Similarity=0.371  Sum_probs=38.5

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||+|.||+++.++.++|+|||++................++..|.+|+.-
T Consensus       150 l~~LH~~~ivH~Dikp~NIli~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~  211 (323)
T 3qup_A          150 MEYLSSRNFIHRDLAARNCMLAEDMTVCVADFGLSRKIYSGDYYRQGCASKLPVKWLALESL  211 (323)
T ss_dssp             HHHHHHTTCCCSCCSGGGEEECTTSCEEECCCCC-----------------CCGGGCCHHHH
T ss_pred             HHHHHcCCcccCCCCcceEEEcCCCCEEEeeccccccccccccccccccccCcccccCchhh
Confidence            46899999999999999999999999999999998765433333333333345556666653

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=98.96  E-value=2.1e-10  Score=78.11  Aligned_cols=62  Identities=39%  Similarity=0.524  Sum_probs=37.7

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+.+++|+||++.||+++.++.++|+|||++................++..|.+|+.-
T Consensus       133 L~~lH~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  194 (289)
T 3og7_A          133 MDYLHAKSIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVI  194 (289)
T ss_dssp             HHHHHHTTCCCSCCCGGGEEEETTTEEEECCCC------------------CCCTTCCHHHH
T ss_pred             HHHHHhCCcccccCccceEEECCCCCEEEccceeccccccccccccccccCCCccccCchhh
Confidence            46899999999999999999999999999999998755433322222333445566666643

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=98.96  E-value=2.4e-10  Score=81.11  Aligned_cols=62  Identities=26%  Similarity=0.429  Sum_probs=45.9

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+.+++|+||+|.||+++.++.++|+|||+++...............++..|.+||.-
T Consensus       204 L~~LH~~~ivH~Dlkp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~  265 (382)
T 3tt0_A          204 MEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEAL  265 (382)
T ss_dssp             HHHHHHTTCCCSCCCGGGEEECTTCCEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHHH
T ss_pred             HHHHHhCCEecCCCCcceEEEcCCCcEEEcccCcccccccccccccccCCCCCcceeCHHHh
Confidence            46899999999999999999999999999999998765433332333333344556666643

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=98.95  E-value=1.8e-10  Score=83.43  Aligned_cols=61  Identities=18%  Similarity=0.304  Sum_probs=44.8

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||+|.||+++..+.++|+|||+++........... ...++..|++||.-
T Consensus       181 L~~LH~~givHrDLKp~NILl~~~g~ikL~DFG~a~~~~~~~~~~~~-~~~gt~~Y~APE~l  241 (410)
T 3v8s_A          181 LDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMVRCD-TAVGTPDYISPEVL  241 (410)
T ss_dssp             HHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECCTTSEEECC-SCCSCGGGCCHHHH
T ss_pred             HHHHHHCCeEeccCCHHHeeECCCCCEEEeccceeEeeccCCccccc-CCcCCccccCHHHh
Confidence            46899999999999999999999999999999998765433222222 23345556666544

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=98.95  E-value=1.6e-10  Score=81.95  Aligned_cols=38  Identities=39%  Similarity=0.746  Sum_probs=35.1

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|||+.+++|+||+|.||+++.++.++|+|||+|+..
T Consensus       122 L~~LH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~  159 (388)
T 3oz6_A          122 IKYLHSGGLLHRDMKPSNILLNAECHVKVADFGLSRSF  159 (388)
T ss_dssp             HHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEES
T ss_pred             HHHHHhCCEEeCCCCHHHeEEcCCCCEEecCCcccccc
Confidence            46899999999999999999999999999999998754

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=98.95  E-value=2.4e-10  Score=82.52  Aligned_cols=39  Identities=33%  Similarity=0.666  Sum_probs=35.4

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||+.+++|+||+|.||+++.++.++|+|||+++...
T Consensus       142 L~~LH~~givHrDlkp~NILl~~~~~~kL~DFGla~~~~  180 (432)
T 3n9x_A          142 ENFIHESGIIHRDLKPANCLLNQDCSVKVCDFGLARTIN  180 (432)
T ss_dssp             HHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEEC-
T ss_pred             HHHHHHCCCCCCCCCHHHeEECCCCCEEEccCCCccccc
Confidence            468999999999999999999999999999999997654

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=98.95  E-value=2.3e-10  Score=79.35  Aligned_cols=61  Identities=30%  Similarity=0.325  Sum_probs=44.7

Q ss_pred             ccchhC----------CccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            2 GYLHAR----------GILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         2 ~~lhs~----------~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      .|||+.          +++|+||+|.||+++..+.++|+|||+++...............++..|.+||.-
T Consensus       135 ~~LH~~~~~l~~~~~~~ivH~Dlkp~Nill~~~~~~kL~DFg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~  205 (322)
T 3soc_A          135 AYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALKFEAGKSAGDTHGQVGTRRYMAPEVL  205 (322)
T ss_dssp             HHHTCCEEEETTEEECEEECSCCSGGGEEECTTCCEEECCCTTCEEECTTSCCCCCTTCCCCGGGCCHHHH
T ss_pred             HHHHhhccccccccCCCEEeCCCChHhEEECCCCeEEEccCCcccccccccCccccccCccCccccCHhhc
Confidence            567777          9999999999999999999999999999765543333333333445666666643

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=98.95  E-value=2e-10  Score=79.95  Aligned_cols=62  Identities=29%  Similarity=0.427  Sum_probs=45.7

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||++.||+++..+.++|+|||++................++.+|.+||.-
T Consensus       118 L~~LH~~givH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~  179 (323)
T 3tki_A          118 VVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELL  179 (323)
T ss_dssp             HHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECEETTEECCBCSCCSCGGGSCHHHH
T ss_pred             HHHHHHCCccccccchHHEEEeCCCCEEEEEeeccceeccCCcccccCCCccCcCccCcHHh
Confidence            46899999999999999999999999999999998765433322222333445556666544

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=98.95  E-value=2.3e-10  Score=82.29  Aligned_cols=39  Identities=23%  Similarity=0.435  Sum_probs=35.5

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||+++++|+||+|.||+++.++.++|+|||+++...
T Consensus       224 L~~LH~~~iiHrDiKp~NILl~~~~~~kL~DFG~a~~~~  262 (413)
T 3dzo_A          224 LASLHHYGLVHTYLRPVDIVLDQRGGVFLTGFEHLVRDG  262 (413)
T ss_dssp             HHHHHHTTEECSCCCGGGEEECTTCCEEECCGGGCEETT
T ss_pred             HHHHHhCCcccCCcccceEEEecCCeEEEEeccceeecC
Confidence            468999999999999999999999999999999987544

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=98.95  E-value=2.7e-10  Score=78.09  Aligned_cols=61  Identities=25%  Similarity=0.324  Sum_probs=40.6

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||+|.||+++.++.++|+|||++............ ...++..|++||.-
T Consensus       124 l~~lH~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~-~~~gt~~y~aPE~~  184 (294)
T 4eqm_A          124 IKHAHDMRIVHRDIKPQNILIDSNKTLKIFDFGIAKALSETSLTQTN-HVLGTVQYFSPEQA  184 (294)
T ss_dssp             HHHHHHTTCCCCCCCGGGEEECTTSCEEECCCSSSTTC--------------CCSSCCHHHH
T ss_pred             HHHHHHCCcccCCCCHHHEEECCCCCEEEEeCCCccccccccccccC-ccccCccccCHhHh
Confidence            46899999999999999999999999999999998765433222222 22345555666543

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=98.95  E-value=1.3e-10  Score=80.60  Aligned_cols=62  Identities=24%  Similarity=0.365  Sum_probs=46.2

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||+|.||+++.++.++|+|||++................++.+|.+||..
T Consensus       185 L~~LH~~~ivH~Dikp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~  246 (344)
T 1rjb_A          185 MEFLEFKSCVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESL  246 (344)
T ss_dssp             HHHHHHTTEEETTCSGGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHH
T ss_pred             HHHHHhCCcccCCCChhhEEEcCCCcEEeCCCccCcccccCccceeccCccCccCccCHHHh
Confidence            46899999999999999999999999999999998765433332223333445566666644

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=98.94  E-value=2.3e-10  Score=82.91  Aligned_cols=61  Identities=20%  Similarity=0.262  Sum_probs=44.8

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||+|.||+++.++.++|+|||+++.......... ....++..|++||.-
T Consensus       175 L~~LH~~giiHrDLKp~NILld~~g~vkL~DFGla~~~~~~~~~~~-~~~~Gt~~Y~APE~l  235 (412)
T 2vd5_A          175 IDSVHRLGYVHRDIKPDNILLDRCGHIRLADFGSCLKLRADGTVRS-LVAVGTPDYLSPEIL  235 (412)
T ss_dssp             HHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECCTTSCEEC-SSCCSCGGGCCHHHH
T ss_pred             HHHHHHCCeeecccCHHHeeecCCCCEEEeechhheeccCCCcccc-ceeccccCcCCHHHH
Confidence            4689999999999999999999999999999999876543322222 223345556666644

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=98.94  E-value=4e-10  Score=77.77  Aligned_cols=62  Identities=32%  Similarity=0.424  Sum_probs=45.3

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||.++++|+||+|.||+++.++.++|+|||++................++.+|.+||.-
T Consensus       152 l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  213 (321)
T 2qkw_B          152 LHYLHTRAIIHRDVKSINILLDENFVPKITDFGISKKGTELDQTHLSTVVKGTLGYIDPEYF  213 (321)
T ss_dssp             HHHHHHTTEECSCCCSTTEEECTTCCEEECCCTTCEECSSSSCCCCBCCCEEETTTCCHHHH
T ss_pred             HHHhcCCCeecCCCCHHHEEECCCCCEEEeecccccccccccccccccccCCCccccCHHHh
Confidence            46899999999999999999999999999999998764433322222333345566666643

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=98.94  E-value=1.6e-10  Score=79.89  Aligned_cols=62  Identities=29%  Similarity=0.424  Sum_probs=44.7

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||++.||+++.++.++|+|||++................++..|++||.-
T Consensus       187 l~~LH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~  248 (343)
T 1luf_A          187 MAYLSERKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESI  248 (343)
T ss_dssp             HHHHHHTTCCCSCCSGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHH
T ss_pred             HHHHHhCCeecCCCCcceEEECCCCeEEEeecCCCcccccCccccccCCCcccceecChhhh
Confidence            46899999999999999999999999999999998765433322233333445666666643

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=98.94  E-value=2.4e-10  Score=78.07  Aligned_cols=62  Identities=26%  Similarity=0.393  Sum_probs=46.2

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|++|+|.||+++.++.++|+|||++................++..|.+||.-
T Consensus       158 l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  219 (313)
T 1t46_A          158 MAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESI  219 (313)
T ss_dssp             HHHHHHTTCCCSCCSGGGEEEETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHH
T ss_pred             HHHHHHCCeecCCCccceEEEcCCCCEEEccccccccccccccceeccCCCCcceeeChHHh
Confidence            46899999999999999999999999999999998765543332223333345566666644

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=98.93  E-value=3e-10  Score=81.15  Aligned_cols=61  Identities=23%  Similarity=0.347  Sum_probs=41.0

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+.+++|+||+|.||++. ++.++|+|||+++...............++.+|++||.-
T Consensus       168 L~~lH~~~ivHrDlkp~NIll~-~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~  228 (390)
T 2zmd_A          168 VHTIHQHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTTSVVKDSQVGAVNYMPPEAI  228 (390)
T ss_dssp             HHHHHTTTCCCCCCCGGGEEES-SSCEEECCCSSSCCC---------CCSCCCGGGCCHHHH
T ss_pred             HHHHHHCCeeecCCCHHHEEEE-CCeEEEEecCccccccCCCccccCCCCCcCCCccChHHh
Confidence            4689999999999999999995 578999999998765433322222333445566666654

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=98.92  E-value=1.5e-10  Score=80.09  Aligned_cols=62  Identities=21%  Similarity=0.354  Sum_probs=45.8

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||+|.||+++.++.++|+|||++................++..|++||..
T Consensus       177 l~~lH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  238 (333)
T 2i1m_A          177 MAFLASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESI  238 (333)
T ss_dssp             HHHHHHTTEECSCCSGGGCEEEGGGEEEBCCCGGGCCGGGCTTSEECSSCEECGGGSCHHHH
T ss_pred             HHHHhcCCcccCCcccceEEECCCCeEEECccccccccccccceeecCCCCCCccccCHHHh
Confidence            46899999999999999999999999999999998765433332223333345566666644

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=98.92  E-value=3.3e-10  Score=77.64  Aligned_cols=40  Identities=38%  Similarity=0.765  Sum_probs=36.0

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKL   40 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~   40 (93)
                      |.|||+++++|+||+|.||+++.++.++|+|||++.....
T Consensus       177 L~~LH~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~  216 (332)
T 3qd2_B          177 VEFLHSKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQ  216 (332)
T ss_dssp             HHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECSC
T ss_pred             HHHHHhCCeeecCCCcccEEEeCCCCEEEeecCccccccc
Confidence            4689999999999999999999999999999999876543

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=98.92  E-value=3.2e-10  Score=80.33  Aligned_cols=60  Identities=20%  Similarity=0.325  Sum_probs=41.7

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||+|.||+++.++.++|+|||+++.......  ......++..|++||.-
T Consensus       137 L~~LH~~givHrDlkp~NILl~~~g~ikL~DFG~a~~~~~~~~--~~~~~~gt~~y~aPE~~  196 (353)
T 3txo_A          137 LMFLHDKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGICNGV--TTATFCGTPDYIAPEIL  196 (353)
T ss_dssp             HHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCC-----------CCGGGCCHHHH
T ss_pred             HHHHHHCCCcccCCCHHHEEECCCCCEEEccccceeecccCCc--cccccCCCcCeEChhhc
Confidence            4689999999999999999999999999999999875332211  22223445566666643

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=98.92  E-value=1.8e-10  Score=81.67  Aligned_cols=62  Identities=24%  Similarity=0.319  Sum_probs=44.6

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||+|.||+++.++.++|+|||+++................+..|.+||.-
T Consensus       226 l~~LH~~~ivHrDlkp~Nil~~~~~~~kl~DfG~s~~~~~~~~~~~~~~~~~~~~y~aPE~~  287 (377)
T 3cbl_A          226 MEYLESKCCIHRDLAARNCLVTEKNVLKISDFGMSREEADGVYAASGGLRQVPVKWTAPEAL  287 (377)
T ss_dssp             HHHHHHTTEECSCCSGGGEEECTTCCEEECCGGGCEECTTSEEECCSSCCEEEGGGSCHHHH
T ss_pred             HHHHHHCCcCCcccCHHHEEEcCCCcEEECcCCCceecCCCceeecCCCCCCCcCcCCHhHh
Confidence            46899999999999999999999999999999998754322222222222345556666643

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=98.91  E-value=3.3e-10  Score=78.70  Aligned_cols=39  Identities=23%  Similarity=0.437  Sum_probs=34.8

Q ss_pred             Cccch-hCCccccCCCCCceEEecCC--------------------cEEEeecccccccc
Q psy700            1 MGYLH-ARGILHKDLKSKNIFIEKNN--------------------KVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lh-s~~iihrdlk~~nill~~~~--------------------~~kl~dfgla~~~~   39 (93)
                      |.||| +++++||||+|.||+++..+                    .++|+|||+|+...
T Consensus       174 L~~lH~~~~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~  233 (336)
T 2vuw_A          174 LAVAEASLRFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLER  233 (336)
T ss_dssp             HHHHHHHHCCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEE
T ss_pred             HHHHHHhCCEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecC
Confidence            46899 89999999999999999776                    89999999997654

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=98.91  E-value=6.8e-10  Score=76.08  Aligned_cols=59  Identities=29%  Similarity=0.392  Sum_probs=43.5

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||+|.||+++.++.++|+|||++........   .....++.+|++||.-
T Consensus       133 l~~lH~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~---~~~~~gt~~y~aPE~~  191 (308)
T 3g33_A          133 LDFLHANCIVHRDLKPENILVTSGGTVKLADFGLARIYSYQMA---LTPVVVTLWYRAPEVL  191 (308)
T ss_dssp             HHHHHHTTCCCSCCCTTTEEECTTSCEEECSCSCTTTSTTCCC---SGGGGCCCSSCCHHHH
T ss_pred             HHHHHHCCcccCCCCHHHEEEcCCCCEEEeeCccccccCCCcc---cCCccccccccCchHH
Confidence            4689999999999999999999999999999999875432221   1222345556666543

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=98.91  E-value=5.5e-10  Score=80.63  Aligned_cols=60  Identities=23%  Similarity=0.387  Sum_probs=44.4

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||+|.||+++.++.++|+|||+++.......  ......++..|++||.-
T Consensus       166 L~~LH~~givHrDLKp~NILl~~~g~ikL~DFGla~~~~~~~~--~~~~~~gt~~Y~aPE~l  225 (396)
T 4dc2_A          166 LNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGD--TTSTFCGTPNYIAPEIL  225 (396)
T ss_dssp             HHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTC--CBCCCCBCGGGCCHHHH
T ss_pred             HHHHHHCCEEeccCCHHHEEECCCCCEEEeecceeeecccCCC--ccccccCCcccCCchhh
Confidence            4689999999999999999999999999999999875322221  22233445566666654

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=98.91  E-value=2.2e-10  Score=80.75  Aligned_cols=57  Identities=14%  Similarity=0.248  Sum_probs=42.9

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||+|.||+++.++.++|+|||+++.......    ...++ .+|+|||.-
T Consensus       207 L~~LH~~~ivHrDikp~NIll~~~~~~kL~DFG~a~~~~~~~~----~~~~t-~~y~aPE~~  263 (371)
T 3q60_A          207 AANLQSKGLVHGHFTPDNLFIMPDGRLMLGDVSALWKVGTRGP----ASSVP-VTYAPREFL  263 (371)
T ss_dssp             HHHHHHTTEEETTCSGGGEEECTTSCEEECCGGGEEETTCEEE----GGGSC-GGGCCHHHH
T ss_pred             HHHHHHCCCccCcCCHHHEEECCCCCEEEEecceeeecCCCcc----CccCC-cCCcChhhc
Confidence            4689999999999999999999999999999999875532221    12233 556666554

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=98.90  E-value=4e-10  Score=79.35  Aligned_cols=61  Identities=26%  Similarity=0.325  Sum_probs=44.6

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||+|.||+++.++.++|+|||+++.......... ....++.+|++||.-
T Consensus       172 L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~DfG~a~~~~~~~~~~~-~~~~gt~~y~aPE~~  232 (355)
T 1vzo_A          172 LEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETERA-YDFCGTIEYMAPDIV  232 (355)
T ss_dssp             HHHHHHTTCCCCCCCGGGEEECTTSCEEESCSSEEEECCGGGGGGG-CGGGSCCTTCCHHHH
T ss_pred             HHHHHHCCcccCCCCHHHEEECCCCcEEEeeCCCCeecccCCCCcc-cCcccCcCccChhhh
Confidence            4689999999999999999999999999999999875432222221 222345566666654

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=98.90  E-value=8.2e-10  Score=74.89  Aligned_cols=62  Identities=18%  Similarity=0.331  Sum_probs=44.1

Q ss_pred             CccchhCCccccCCCCCceEEecCCc-----EEEeeccccccccccCCC-----CCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNK-----VVITDFGLFNFSKLYNSY-----TSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~-----~kl~dfgla~~~~~~~~~-----~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||+|.||+++..+.     ++|+|||++.........     .......++..|++||.-
T Consensus       119 l~~lH~~~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  190 (298)
T 1csn_A          119 VQSIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTH  190 (298)
T ss_dssp             HHHHHTTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHH
T ss_pred             HHHHHhCCEecCCCCHHHEEeccCCCCCCCeEEEEECccccccccccccccccccCccCCCCCcccCCchhh
Confidence            46899999999999999999976654     999999998765433221     112333455666666654

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=98.90  E-value=3.1e-10  Score=77.85  Aligned_cols=62  Identities=27%  Similarity=0.384  Sum_probs=39.3

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|++|+|.||+++.++.++|+|||++................++..|.+|+..
T Consensus       160 L~~LH~~~ivH~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  221 (313)
T 3brb_A          160 MEYLSNRNFLHRDLAARNCMLRDDMTVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESL  221 (313)
T ss_dssp             HHHHHTTTCCCCCCSGGGEEECTTSCEEECSCSCC----------------CCGGGSCHHHH
T ss_pred             HHHHHhCCcccCCCCcceEEEcCCCcEEEeecCcceecccccccCcccccCCCccccCchhh
Confidence            46899999999999999999999999999999998765433322233333445556666654

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=98.90  E-value=2.1e-10  Score=81.23  Aligned_cols=62  Identities=19%  Similarity=0.224  Sum_probs=44.5

Q ss_pred             CccchhCCccccCCCCCceEEecC---CcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKN---NKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~---~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||++.||+++..   ..++|+|||+++...............++..|++||.-
T Consensus       194 L~~LH~~~ivHrDlkp~NIll~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~  258 (367)
T 3l9p_A          194 CQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRAGYYRKGGCAMLPVKWMPPEAF  258 (367)
T ss_dssp             HHHHHHTTCCCSCCCGGGEEESCSSTTCCEEECCCHHHHHHHHHSSCTTCCGGGSCGGGCCHHHH
T ss_pred             HHHHHhCCeeCCCCChhhEEEecCCCCceEEECCCccccccccccccccCCCcCCcccEECHHHh
Confidence            468999999999999999999844   35999999998765433333333333445666666644

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=98.90  E-value=6.8e-10  Score=78.72  Aligned_cols=60  Identities=20%  Similarity=0.323  Sum_probs=43.8

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||+|.||+++.++.++|+|||+++.......  ......++..|++||.-
T Consensus       134 L~~LH~~givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~--~~~~~~gt~~y~aPE~~  193 (353)
T 2i0e_A          134 LFFLQSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDGV--TTKTFCGTPDYIAPEII  193 (353)
T ss_dssp             HHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTC--CBCCCCSCGGGCCHHHH
T ss_pred             HHHHHHCCEEeccCCHHHEEEcCCCcEEEEeCCcccccccCCc--ccccccCCccccChhhh
Confidence            4689999999999999999999999999999999875322111  22233445556666543

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=98.90  E-value=2.2e-10  Score=78.27  Aligned_cols=62  Identities=31%  Similarity=0.412  Sum_probs=45.5

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|++|+|.||+++..+.++|+|||++................++.+|.+||..
T Consensus       161 l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~  222 (316)
T 2xir_A          161 MEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETI  222 (316)
T ss_dssp             HHHHHHTTCCCSCCSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHH
T ss_pred             HHHHHhCCcccccCccceEEECCCCCEEECCCccccccccCccceeccCCCcceeecCchhh
Confidence            46899999999999999999998899999999998765433322222333345566666644

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=98.90  E-value=5.5e-10  Score=78.26  Aligned_cols=59  Identities=24%  Similarity=0.356  Sum_probs=43.6

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||+|.||+++.++.++|+|||++........   .....++.+|++||.-
T Consensus       127 l~~lH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~---~~~~~gt~~y~aPE~~  185 (328)
T 3fe3_A          127 VQYCHQKRIVHRDLKAENLLLDADMNIKIADFGFSNEFTVGGK---LDAFCGAPPYAAPELF  185 (328)
T ss_dssp             HHHHHHTTCCCSCCCGGGEEECTTSCEEECSTTCCGGGSSSCG---GGTTSSSGGGCCHHHH
T ss_pred             HHHHHHCCEeccCCCHHHEEEcCCCCEEEeeccCceecCCCCc---cccccCCcceeCcccc
Confidence            4689999999999999999999999999999999865443221   1222344556665543

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=98.89  E-value=9.7e-10  Score=78.49  Aligned_cols=60  Identities=32%  Similarity=0.447  Sum_probs=44.0

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||++.||+++.++.++|+|||+++.......  ......++..|++||.-
T Consensus       152 L~~LH~~givHrDlkp~NIll~~~g~ikL~DFG~a~~~~~~~~--~~~~~~gt~~y~aPE~~  211 (373)
T 2r5t_A          152 LGYLHSLNIVYRDLKPENILLDSQGHIVLTDFGLCKENIEHNS--TTSTFCGTPEYLAPEVL  211 (373)
T ss_dssp             HHHHHHTTCCCCCCCGGGEEECTTSCEEECCCCBCGGGBCCCC--CCCSBSCCCCCCCHHHH
T ss_pred             HHHHHHCCceecCCCHHHEEECCCCCEEEeeCccccccccCCC--ccccccCCccccCHHHh
Confidence            4689999999999999999999999999999999875332221  22233445556666543

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=98.89  E-value=5.9e-10  Score=81.52  Aligned_cols=59  Identities=27%  Similarity=0.287  Sum_probs=40.2

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+.+++|+||+|.||+++.++.++|+|||+++.......   .....++.+|.+||.-
T Consensus       177 L~~lH~~~iiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~---~~~~~gt~~y~aPE~~  235 (464)
T 3ttj_A          177 IKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFM---MTPYVVTRYYRAPEVI  235 (464)
T ss_dssp             HHHHHHTTCCCCCCCGGGEEECTTSCEEECCCCCC-----CCC---C----CCCTTCCHHHH
T ss_pred             HHHHHHCCcccCCCChHhEEEeCCCCEEEEEEEeeeecCCCcc---cCCCcccccccCHHHH
Confidence            4689999999999999999999999999999999876543211   1222345556666543

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=98.89  E-value=2.5e-10  Score=85.90  Aligned_cols=58  Identities=24%  Similarity=0.326  Sum_probs=41.7

Q ss_pred             CccchhCCccccCCCCCceEEecC--CcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKN--NKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~--~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||+++|+||||+|.||+++..  +.+||+|||+|+.........   ...++.+|++||.
T Consensus       268 l~ylH~~~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~~~~~~~---~~~GT~~y~APEv  327 (573)
T 3uto_A          268 LCHMHENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSVK---VTTGTAEFAAPEV  327 (573)
T ss_dssp             HHHHHHTTEECCCCCGGGEEESSSSCCCEEECCCSSCEECCTTSEEE---EECSSGGGCCHHH
T ss_pred             HHHHHHCCeeeccCChhhccccCCCCCCEEEeeccceeEccCCCcee---eeEECccccCHHH
Confidence            469999999999999999999754  689999999997654332221   1233445555554

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=98.89  E-value=7.7e-10  Score=78.22  Aligned_cols=60  Identities=27%  Similarity=0.433  Sum_probs=44.1

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||+|.||+++.++.++|+|||+++.......  ......++..|++||.-
T Consensus       131 L~~LH~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~--~~~~~~gt~~y~aPE~~  190 (345)
T 1xjd_A          131 LQFLHSKGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDA--KTNTFCGTPDYIAPEIL  190 (345)
T ss_dssp             HHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTC--CBCCCCSCGGGCCHHHH
T ss_pred             HHHHHHCCeEeCCCChhhEEECCCCCEEEeEChhhhhcccCCC--cccCCCCCcccCChhhh
Confidence            4689999999999999999999999999999999865332211  12233445566666654

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=98.89  E-value=4e-10  Score=79.73  Aligned_cols=57  Identities=23%  Similarity=0.290  Sum_probs=42.8

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEEE   63 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~~   63 (93)
                      |.|||+++++|+||+|.||+++.++.++|+|||+++.....    ... ..+ .+|+|||.-.
T Consensus       219 L~~LH~~~ivHrDikp~NIll~~~~~~kL~DFG~a~~~~~~----~~~-~~g-~~y~aPE~~~  275 (377)
T 3byv_A          219 LASLHHYGLVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGAR----VVS-SVS-RGFEPPELEA  275 (377)
T ss_dssp             HHHHHHTTEECSCCCGGGEEECTTCCEEECCGGGCEETTCE----EEC-CCC-TTCCCHHHHH
T ss_pred             HHHHHhCCeecCCCCHHHEEEcCCCCEEEEechhheecCCc----ccC-CCC-cCccChhhhc
Confidence            46899999999999999999999999999999998753321    112 233 5566666543

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=98.89  E-value=3e-10  Score=78.04  Aligned_cols=62  Identities=27%  Similarity=0.365  Sum_probs=44.4

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|++|++.||+++.++.++|+|||++................++..|.+|+.-
T Consensus       151 l~~lH~~~i~H~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  212 (322)
T 1p4o_A          151 MAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESL  212 (322)
T ss_dssp             HHHHHHTTCBCSCCSGGGEEECTTCCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHH
T ss_pred             HHHHHHCCCccCCCccceEEEcCCCeEEECcCccccccccccccccccCCCCCCCccChhhh
Confidence            46899999999999999999999999999999998755433322222222234456666643

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=98.89  E-value=5.1e-10  Score=76.43  Aligned_cols=61  Identities=25%  Similarity=0.399  Sum_probs=44.8

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||..+++|++|+|.||+++.++.++|+|||++................++..|.+|+.
T Consensus       146 l~~lH~~~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE~  206 (307)
T 2nru_A          146 INFLHENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEA  206 (307)
T ss_dssp             HHHHHHTTEECSCCCGGGEEECTTCCEEECCCTTCEECCSCSSCEECSSCCSCGGGCCHHH
T ss_pred             HHHHhcCCeecCCCCHHHEEEcCCCcEEEeecccccccccccccccccccCCCcCcCChHH
Confidence            4689999999999999999999999999999999876543332222222334556666664

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=98.89  E-value=6.2e-10  Score=78.40  Aligned_cols=60  Identities=25%  Similarity=0.376  Sum_probs=43.6

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||+|.||+++.++.++|+|||+++.......  ......++..|++||.-
T Consensus       118 L~~LH~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~--~~~~~~gt~~y~aPE~~  177 (337)
T 1o6l_A          118 LEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGA--TMKTFCGTPEYLAPEVL  177 (337)
T ss_dssp             HHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCCTTC--CBCCCEECGGGCCGGGG
T ss_pred             HHHHHHCCeecCcCCHHHEEECCCCCEEEeeccchhhcccCCC--cccccccChhhCChhhh
Confidence            4689999999999999999999999999999999865322211  12223345556666543

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=98.89  E-value=8.7e-10  Score=77.71  Aligned_cols=60  Identities=23%  Similarity=0.387  Sum_probs=43.8

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||+|.||+++.++.++|+|||+++.......  ......++..|.+||.-
T Consensus       123 L~~LH~~~ivHrDlkp~NIll~~~g~~kL~DFG~a~~~~~~~~--~~~~~~gt~~y~aPE~~  182 (345)
T 3a8x_A          123 LNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGD--TTSTFCGTPNYIAPEIL  182 (345)
T ss_dssp             HHHHHHTTCBCCCCCGGGEEECTTSCEEECCGGGCBCSCCTTC--CBCCCCSCGGGCCHHHH
T ss_pred             HHHHHHCCceecCCCHHHEEECCCCCEEEEeccccccccCCCC--cccccCCCccccCcccc
Confidence            4689999999999999999999999999999999875332221  12233445556666543

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=98.89  E-value=5.4e-10  Score=77.61  Aligned_cols=62  Identities=27%  Similarity=0.426  Sum_probs=45.4

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|++|++.||+++.++.++|+|||++.................+..|.+|+..
T Consensus       170 L~~LH~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  231 (334)
T 2pvf_A          170 MEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEAL  231 (334)
T ss_dssp             HHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHHH
T ss_pred             HHHHHhCCeeCCCCccceEEEcCCCCEEEccccccccccccccccccCCCCcccceeChHHh
Confidence            46899999999999999999999999999999998765433322222223344556666644

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=98.88  E-value=1e-09  Score=83.68  Aligned_cols=60  Identities=20%  Similarity=0.323  Sum_probs=44.5

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++|+||||+|.||+++.++.++|+|||+++.......  ......++.+|++||.-
T Consensus       455 L~~LH~~gIiHrDLKp~NILl~~~g~ikL~DFGla~~~~~~~~--~~~~~~GT~~Y~APE~l  514 (674)
T 3pfq_A          455 LFFLQSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDGV--TTKTFCGTPDYIAPEII  514 (674)
T ss_dssp             HHHHHHTSEECCCCCSTTEEECSSSCEEECCCTTCEECCCTTC--CBCCCCSCSSSCCHHHH
T ss_pred             HHHHHhCCeEeccCChhhEEEcCCCcEEEeecceeeccccCCc--ccccccCCCcccCHhhh
Confidence            4689999999999999999999999999999999875332221  22233455566666643

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=98.88  E-value=6.3e-10  Score=79.95  Aligned_cols=58  Identities=24%  Similarity=0.369  Sum_probs=43.6

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||+++++|+||+|.||+++..+.++|+|||++.......   ......++.+|++||.
T Consensus       128 L~~LH~~givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~---~~~~~~gt~~Y~aPE~  185 (384)
T 4fr4_A          128 LDYLQNQRIIHRDMKPDNILLDEHGHVHITDFNIAAMLPRET---QITTMAGTKPYMAPEM  185 (384)
T ss_dssp             HHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECCTTC---CBCCCCSCGGGCCGGG
T ss_pred             HHHHHHCCceeccCcHHHeEECCCCCEEEeccceeeeccCCC---ceeccCCCccccCCee
Confidence            468999999999999999999999999999999987654222   1222334555666654

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=98.88  E-value=7.4e-10  Score=75.40  Aligned_cols=60  Identities=25%  Similarity=0.435  Sum_probs=43.9

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||++.||+++.++.++|+|||++........  ......++.+|.|||.-
T Consensus       114 l~~lH~~~ivH~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~~t~~y~aPE~~  173 (292)
T 3o0g_A          114 LGFCHSRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIPVR--CYSAEVVTLWYRPPDVL  173 (292)
T ss_dssp             HHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECCSCCS--CCCSCCSCGGGCCHHHH
T ss_pred             HHHHHhCCeecCCCCHHHEEEcCCCCEEEeecccceecCCccc--cccCCccccCCcChHHH
Confidence            4689999999999999999999999999999999876532221  12222335556666643

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=98.88  E-value=4.1e-10  Score=76.32  Aligned_cols=61  Identities=25%  Similarity=0.479  Sum_probs=35.3

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||+|.||+++.++.++|+|||++........... .....+..|++||.-
T Consensus       129 l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~-~~~~~~~~y~aPE~~  189 (281)
T 1mp8_A          129 LAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKA-SKGKLPIKWMAPESI  189 (281)
T ss_dssp             HHHHHHTTCCCSCCSGGGEEEEETTEEEECC--------------------CCGGGCCHHHH
T ss_pred             HHHHHhCCeecccccHHHEEECCCCCEEECccccccccCccccccc-ccCCCcccccChhhc
Confidence            4689999999999999999999999999999999876543322222 222234456666643

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=98.88  E-value=1.1e-09  Score=77.19  Aligned_cols=58  Identities=31%  Similarity=0.436  Sum_probs=42.8

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||+.+++|+||+|.||+++.++.++|+|||++........   .....++.+|++||.
T Consensus       121 L~~LH~~givH~Dlkp~NIll~~~~~~kl~DFG~s~~~~~~~~---~~~~~gt~~y~aPE~  178 (336)
T 3h4j_B          121 IEYCHRHKIVHRDLKPENLLLDDNLNVKIADFGLSNIMTDGNF---LKTSCGSPNYAAPEV  178 (336)
T ss_dssp             HHHHHHHTCCCCCCSTTTEEECTTCCEEECCSSCTBTTTTSBT---TCCCTTSTTTSCGGG
T ss_pred             HHHHHHCCeEecCCchhhEEEcCCCCEEEEEeccceeccCCcc---cccccCCcCcCCHHH
Confidence            4689999999999999999999999999999999876543222   122233445555554

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=98.87  E-value=1e-09  Score=76.09  Aligned_cols=62  Identities=18%  Similarity=0.275  Sum_probs=44.4

Q ss_pred             CccchhCCccccCCCCCceEEecCCc-----EEEeeccccccccccCCCC-----CCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNK-----VVITDFGLFNFSKLYNSYT-----SNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~-----~kl~dfgla~~~~~~~~~~-----~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+.+++|+||+|.||+++..+.     ++|+|||++..........     ......++..|++||.-
T Consensus       118 l~~LH~~~iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  189 (330)
T 2izr_A          118 MEYVHSKNLIYRDVKPENFLIGRPGNKTQQVIHIIDFALAKEYIDPETKKHIPYREHKSLTGTARYMSINTH  189 (330)
T ss_dssp             HHHHHHTTEECCCCCGGGEEECCGGGTCTTSEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHH
T ss_pred             HHHHHhCCeeccCCCHHHeeeccCCCCCCceEEEEEcccceeeecCCCCccccccccCCcCCCccccChHHH
Confidence            46899999999999999999987776     9999999987643322211     12334455666666654

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=98.87  E-value=1.1e-09  Score=76.16  Aligned_cols=60  Identities=30%  Similarity=0.418  Sum_probs=40.4

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||.++++|+||+|.||+++.++.++|+|||+++.......  ......++.+|++||.-
T Consensus       134 l~~lH~~~ivH~Dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~  193 (327)
T 3a62_A          134 LGHLHQKGIIYRDLKPENIMLNHQGHVKLTDFGLCKESIHDGT--VTHTFCGTIEYMAPEIL  193 (327)
T ss_dssp             HHHHHHTTCCCCCCCTTTEEECTTSCEEECCCSCC------------CTTSSCCTTSCHHHH
T ss_pred             HHHHHhCCEEcccCCHHHeEECCCCcEEEEeCCcccccccCCc--cccccCCCcCccCHhhC
Confidence            4689999999999999999999999999999999865332221  12223345556666543

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=98.87  E-value=9.2e-10  Score=75.61  Aligned_cols=60  Identities=25%  Similarity=0.340  Sum_probs=44.4

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||+|.||+++.++.++|+|||++........  ......++.+|++||.-
T Consensus       129 l~~lH~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~  188 (297)
T 3fxz_A          129 LEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQS--KRSTMVGTPYWMAPEVV  188 (297)
T ss_dssp             HHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSTTC--CBCCCCSCGGGCCHHHH
T ss_pred             HHHHHhCCceeCCCCHHHEEECCCCCEEEeeCCCceecCCccc--ccCCccCCcCccChhhh
Confidence            4689999999999999999999999999999999865543222  12223345556666653

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=98.87  E-value=8.1e-10  Score=75.77  Aligned_cols=39  Identities=44%  Similarity=0.809  Sum_probs=35.5

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||+++++|+||++.||+++.++.++|+|||++....
T Consensus       121 l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~  159 (310)
T 3s95_A          121 MAYLHSMNIIHRDLNSHNCLVRENKNVVVADFGLARLMV  159 (310)
T ss_dssp             HHHHHHTTEECSCCSTTSEEECTTSCEEECCCTTCEECC
T ss_pred             HHHHHhCCccCCCCCcCeEEECCCCCEEEeecccceecc
Confidence            468999999999999999999999999999999987643

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=98.86  E-value=1.1e-09  Score=75.61  Aligned_cols=59  Identities=24%  Similarity=0.317  Sum_probs=42.5

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||+.+++|+||+|.||+++.++.++|+|||++......... ... ..++.+|.+||.
T Consensus       132 l~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~-~~~-~~~t~~y~aPE~  190 (311)
T 3niz_A          132 VAHCHQHRILHRDLKPQNLLINSDGALKLADFGLARAFGIPVRS-YTH-EVVTLWYRAPDV  190 (311)
T ss_dssp             HHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEETTSCCC----C-CCCCCTTCCHHH
T ss_pred             HHHHHHCCcccCCCchHhEEECCCCCEEEccCcCceecCCCccc-ccC-CcccCCcCCHHH
Confidence            46899999999999999999999999999999998765322211 122 233455555554

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=98.86  E-value=6.2e-10  Score=75.77  Aligned_cols=62  Identities=32%  Similarity=0.482  Sum_probs=41.0

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCC-CCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSY-TSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~-~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+.+++|+||+|.||+++..+.++|+|||++......... .......++.+|.+|+.-
T Consensus       127 l~~lH~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  189 (295)
T 3ugc_A          127 MEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEFFKVKEPGESPIFWYAPESL  189 (295)
T ss_dssp             HHHHHHTTCCCSCCSGGGEEEEETTEEEECCCCSCC-------------CTTCGGGGCCHHHH
T ss_pred             HHHHhcCCcccCCCCHhhEEEcCCCeEEEccCcccccccCCcceeeeccCCCCccceeCcHHh
Confidence            46899999999999999999999999999999998765433222 122223344456666644

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=98.86  E-value=8.8e-10  Score=79.66  Aligned_cols=60  Identities=25%  Similarity=0.378  Sum_probs=43.2

Q ss_pred             Cccchh-CCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHA-RGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs-~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+ .+++|+||+|.||+++.++.++|+|||+++.......  ......++.+|++||.-
T Consensus       261 L~~LH~~~giiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~--~~~~~~gt~~y~aPE~~  321 (446)
T 4ejn_A          261 LDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGA--TMKTFCGTPEYLAPEVL  321 (446)
T ss_dssp             HHHHHHHTCCCCCCCCGGGEEECSSSCEEECCCCCCCTTCC-------CCSSSCGGGCCHHHH
T ss_pred             HHHHhhcCCEEECCCCHHHEEECCCCCEEEccCCCceeccCCCc--ccccccCCccccCHhhc
Confidence            468998 9999999999999999999999999999875332221  12233455666666654

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=98.86  E-value=9.3e-10  Score=77.41  Aligned_cols=61  Identities=25%  Similarity=0.351  Sum_probs=45.0

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCC-CCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYT-SNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~-~~~~~~~~~~~~p~e~   61 (93)
                      |.|||+++++|+||+|.||+++.++.++|+|||++.......... ......++.+|.+|+.
T Consensus       141 L~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~  202 (364)
T 3qyz_A          141 LKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEI  202 (364)
T ss_dssp             HHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECCGGGCBCCTTCCCCSCGGGCCHHH
T ss_pred             HHHHHHCCeecCCCChHhEEECCCCCEEEEeCcceEecCCCCCccccccccccccCCCCCHH
Confidence            468999999999999999999999999999999987654333222 1223344555666664

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=98.86  E-value=7.8e-10  Score=76.40  Aligned_cols=62  Identities=26%  Similarity=0.366  Sum_probs=43.8

Q ss_pred             CccchhC---------CccccCCCCCceEEecCCcEEEeeccccccccccCCC------CCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHAR---------GILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSY------TSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~---------~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~------~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+.         +++|+||+|.||+++.++.++|+|||++.........      .......++..|.+||.-
T Consensus       124 L~~LH~~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  200 (336)
T 3g2f_A          124 LAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVL  200 (336)
T ss_dssp             HHHHHCCBCCGGGCBCCEECSSCSGGGEEECTTSCEEECCCTTCEECSSSSCC---------CCTTSCGGGCCHHHH
T ss_pred             HHHHHhhhccccccccceeecccccceEEEcCCCcEEEeeccceeecccccccCccccccccccCCCccceeCchhh
Confidence            4689998         9999999999999999999999999998765422211      111223345566666654

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=98.85  E-value=5.8e-10  Score=76.96  Aligned_cols=59  Identities=25%  Similarity=0.344  Sum_probs=42.4

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+.+++|+||+|.||+++.++.++|+|||++........   .....++.+|.+||.-
T Consensus       170 L~~LH~~~ivH~Dikp~NIll~~~~~~kl~DFG~a~~~~~~~~---~~~~~gt~~y~aPE~~  228 (311)
T 3p1a_A          170 LAHLHSQGLVHLDVKPANIFLGPRGRCKLGDFGLLVELGTAGA---GEVQEGDPRYMAPELL  228 (311)
T ss_dssp             HHHHHHTTEECCCCSGGGEEECGGGCEEECCCTTCEECC---------CCCCCGGGCCGGGG
T ss_pred             HHHHHHCCEecCCCCHHHEEECCCCCEEEccceeeeecccCCC---CcccCCCccccCHhHh
Confidence            4689999999999999999999999999999999865432221   2222345566666643

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=98.85  E-value=1.2e-09  Score=73.93  Aligned_cols=62  Identities=24%  Similarity=0.423  Sum_probs=44.9

Q ss_pred             CccchhCCccccCCCCCceEE---ecCCcEEEeeccccccccccCCC-----CCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFI---EKNNKVVITDFGLFNFSKLYNSY-----TSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill---~~~~~~kl~dfgla~~~~~~~~~-----~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||+|.||++   +..+.++|+|||++.........     .......++..|++|+..
T Consensus       118 l~~LH~~~ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  187 (296)
T 4hgt_A          118 IEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTH  187 (296)
T ss_dssp             HHHHHHTTEECSCCSGGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCSCCCCSCGGGCCHHHH
T ss_pred             HHHHHHCCeecCCCCHHHeeeeccCCCCeEEEecCccceeccCcccCccCCCCcccccCCCccccchHHh
Confidence            468999999999999999999   67788999999998765433221     122233455666666654

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=98.85  E-value=1.2e-09  Score=76.31  Aligned_cols=57  Identities=30%  Similarity=0.461  Sum_probs=42.7

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||+|.||+++.++.++|+|||++......     .....++..|++||.-
T Consensus       119 L~~LH~~~ivHrDlkp~NIll~~~g~~kL~Dfg~a~~~~~~-----~~~~~gt~~y~aPE~~  175 (318)
T 1fot_A          119 LEYLHSKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDV-----TYTLCGTPDYIAPEVV  175 (318)
T ss_dssp             HHHHHTTTEECCCCCGGGEEECTTSCEEECCCSSCEECSSC-----BCCCCSCTTTCCHHHH
T ss_pred             HHHHHHCCccccCCChheEEEcCCCCEEEeecCcceecCCc-----cccccCCccccCHhHh
Confidence            46899999999999999999999999999999998754321     1122344555555543

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=98.85  E-value=7.7e-10  Score=75.14  Aligned_cols=62  Identities=31%  Similarity=0.365  Sum_probs=44.4

Q ss_pred             Cccch--------hCCccccCCCCCceEEecCCcEEEeeccccccccccCCCC--CCCCCCCCCCCChhhhh
Q psy700            1 MGYLH--------ARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYT--SNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lh--------s~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~--~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||        +.+++|+||+|.||+++.++.++|+|||++..........  ......++.+|++||.-
T Consensus       118 l~~lH~~~~~~~~~~~ivH~Dlkp~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  189 (301)
T 3q4u_A          118 LAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVL  189 (301)
T ss_dssp             HHHHHSCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCCTTCEEEETTTTEEECCCCCCCCCGGGCCHHHH
T ss_pred             HHHHHHhhhhccCCCCeecCCCChHhEEEcCCCCEEEeeCCCeeecccccccccccccccccccceeChhhh
Confidence            46889        8999999999999999999999999999987544332221  12222345566666654

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=98.85  E-value=1.2e-09  Score=76.14  Aligned_cols=62  Identities=26%  Similarity=0.369  Sum_probs=44.4

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCC--CCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYT--SNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~--~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||+|.||+++.++.++|+|||++..........  ......++.+|.+||.-
T Consensus       137 l~~LH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  200 (351)
T 3mi9_A          137 LYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELL  200 (351)
T ss_dssp             HHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECCCCSSSSCCCCCSSCSCGGGCCHHHH
T ss_pred             HHHHHHCCeeCCCCCHHHEEEcCCCCEEEccchhcccccccccccccccCCcccccCccCchhh
Confidence            468999999999999999999999999999999987654222211  11222335556666643

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=98.85  E-value=9.7e-10  Score=75.00  Aligned_cols=60  Identities=25%  Similarity=0.383  Sum_probs=43.6

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||+|.||+++.++.++|+|||++.........  .....++..|++||..
T Consensus       150 l~~lH~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~--~~~~~gt~~y~aPE~~  209 (298)
T 2zv2_A          150 IEYLHYQKIIHRDIKPSNLLVGEDGHIKIADFGVSNEFKGSDAL--LSNTVGTPAFMAPESL  209 (298)
T ss_dssp             HHHHHHTTEECCCCCGGGEEECTTSCEEECCCTTCEECSSSSCE--ECCCCSCGGGCCGGGC
T ss_pred             HHHHHHCCeeccCCCHHHEEECCCCCEEEecCCCcccccccccc--ccCCcCCccccChhhh
Confidence            46899999999999999999999999999999998755422211  1122344555556543

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=98.85  E-value=1.8e-09  Score=75.44  Aligned_cols=60  Identities=28%  Similarity=0.363  Sum_probs=43.5

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+.+++|+||++.||+++.++.++|+|||++........  ......++.+|.+||.-
T Consensus       125 l~~lH~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~--~~~~~~~t~~y~aPE~~  184 (346)
T 1ua2_A          125 LEYLHQHWILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNR--AYTHQVVTRWYRAPELL  184 (346)
T ss_dssp             HHHHHHTTCCCCCCCGGGEEECTTCCEEECCCGGGSTTTSCCC--CCCCSCCCCTTCCHHHH
T ss_pred             HHHHHHCCEECCCCCHHHEEEcCCCCEEEEecccceeccCCcc--cCCcccccccccCchHh
Confidence            4689999999999999999999999999999999875532221  11222334555555543

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=98.85  E-value=1e-09  Score=74.42  Aligned_cols=62  Identities=23%  Similarity=0.313  Sum_probs=44.4

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCC--CCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNS--YTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~--~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||+|.||+++.++.++|+|||++........  ........++..|.+|+..
T Consensus       137 l~~LH~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  200 (298)
T 3pls_A          137 MEYLAEQKFVHRDLAARNCMLDESFTVKVADFGLARDILDREYYSVQQHRHARLPVKWTALESL  200 (298)
T ss_dssp             HHHHHHTTCCCSCCSGGGEEECTTCCEEECCTTSSCTTTTGGGGCSCCSSCTTCGGGGSCHHHH
T ss_pred             HHHHHhCCcccCCCCcceEEEcCCCcEEeCcCCCcccccCCcccccccCcCCCCCccccChhhh
Confidence            4689999999999999999999999999999999875432221  1122223345556666554

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=98.84  E-value=1.7e-09  Score=74.83  Aligned_cols=60  Identities=25%  Similarity=0.365  Sum_probs=43.5

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||+|.||+++.++.++|+|||++........  ......++.+|.+||.-
T Consensus       121 L~~lH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~~t~~y~aPE~~  180 (317)
T 2pmi_A          121 LAFCHENKILHRDLKPQNLLINKRGQLKLGDFGLARAFGIPVN--TFSSEVVTLWYRAPDVL  180 (317)
T ss_dssp             HHHHHHTTEECCCCCGGGEEECTTCCEEECCCSSCEETTSCCC--CCCCCCSCCTTCCHHHH
T ss_pred             HHHHHHCCeeeCCCChHHeEEcCCCCEEECcCccceecCCCcc--cCCCCcccccccCchHh
Confidence            4689999999999999999999999999999999876542221  11222334556666543

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=98.84  E-value=1e-09  Score=73.73  Aligned_cols=62  Identities=29%  Similarity=0.427  Sum_probs=44.7

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|++|++.||+++.++.++|+|||++................++.+|.+|+..
T Consensus       118 l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  179 (276)
T 2yex_A          118 VVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELL  179 (276)
T ss_dssp             HHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECEETTEECCBCCCCSCGGGCCGGGG
T ss_pred             HHHHHhCCeeccCCChHHEEEccCCCEEEeeCCCccccCCCcchhcccCCccccCccChHHH
Confidence            46899999999999999999999999999999998755433222222233345556666543

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=98.84  E-value=1.5e-09  Score=75.80  Aligned_cols=62  Identities=18%  Similarity=0.314  Sum_probs=44.1

Q ss_pred             CccchhCCccccCCCCCceEEecCC--cEEEeeccccccccccCCCC-----CCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNN--KVVITDFGLFNFSKLYNSYT-----SNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~--~~kl~dfgla~~~~~~~~~~-----~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||+|.||+++.+.  .++|+|||+++.........     ......++..|++||..
T Consensus       164 L~~LH~~~ivH~Dlkp~NIll~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  232 (345)
T 2v62_A          164 LEYIHENEYVHGDIKAANLLLGYKNPDQVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAH  232 (345)
T ss_dssp             HHHHHHTTEECSCCSGGGEEEESSSTTSEEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHH
T ss_pred             HHHHHhCCeeCCCcCHHHEEEccCCCCcEEEEeCCCceecccccccccchhccccccCCCccccCHHHh
Confidence            4689999999999999999998776  89999999987654222111     11223455666666654

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=98.84  E-value=1.2e-09  Score=75.22  Aligned_cols=62  Identities=26%  Similarity=0.371  Sum_probs=39.0

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCC-CCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSY-TSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~-~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||.++++|+||++.||+++.++.++|+|||++......... .......++.+|++||.-
T Consensus       129 l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~  191 (311)
T 3ork_A          129 LNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQA  191 (311)
T ss_dssp             HHHHHHTTCCCCCCCGGGEEEETTSCEEECCCSCC------------------CCTTCCHHHH
T ss_pred             HHHHHHCCCCcCCCCHHHEEEcCCCCEEEeeccCcccccccccccccccccCcCcccCCHHHh
Confidence            46899999999999999999999999999999998754432211 112223345566666654

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=98.83  E-value=1.1e-09  Score=74.52  Aligned_cols=62  Identities=32%  Similarity=0.475  Sum_probs=45.2

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCC-CCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSY-TSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~-~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||+|.||+++.++.++|+|||++......... .......++..|.+|+.-
T Consensus       139 l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  201 (302)
T 4e5w_A          139 MDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEYYTVKDDRDSPVFWYAPECL  201 (302)
T ss_dssp             HHHHHHTTEECSCCSGGGEEEEETTEEEECCCTTCEECCTTCCEEECCCCTTCCGGGCCHHHH
T ss_pred             HHHhhcCCcccCCCchheEEEcCCCCEEECcccccccccCCCcceeccCCCCCCccccCCeee
Confidence            46899999999999999999999999999999998765433321 222333345556666643

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=98.83  E-value=9.9e-10  Score=78.35  Aligned_cols=62  Identities=26%  Similarity=0.314  Sum_probs=39.0

Q ss_pred             CccchhCCccccCCCCCceEE----ecCCcEEEeeccccccccccCCC-CCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFI----EKNNKVVITDFGLFNFSKLYNSY-TSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill----~~~~~~kl~dfgla~~~~~~~~~-~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||+|.||++    ...+.++|+|||+++........ .......++.+|.+||.-
T Consensus       141 l~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~  207 (405)
T 3rgf_A          141 IHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELL  207 (405)
T ss_dssp             HHHHHHTTCCCCCCCGGGEEECCSSTTTTCEEECCTTCCC----------------CCCTTCCHHHH
T ss_pred             HHHHHhCCEeCCCcCHHHeEEecCCCCCCcEEEEECCCceecCCCCcccccCCCceecCcccCchhh
Confidence            468999999999999999999    56678999999998765422111 122223445556666643

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=98.83  E-value=7.5e-10  Score=77.03  Aligned_cols=62  Identities=24%  Similarity=0.374  Sum_probs=42.8

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCC-CCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYT-SNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~-~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+.+++|+||+|.||+++.++.++|+|||+++......... .......+.+|++|+.-
T Consensus       164 L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~  226 (325)
T 3kul_A          164 MRYLSDLGYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPDAAYTTTGGKIPIRWTAPEAI  226 (325)
T ss_dssp             HHHHHHTTEECSCCSGGGEEECTTCCEEECCCSSCEECC----CCEECC---CCGGGSCHHHH
T ss_pred             HHHHHHCCeeCCCCCcceEEECCCCCEEECCCCcccccccCccceeeccCCCCcccccCHhHh
Confidence            468999999999999999999999999999999987654332221 12222234556666654

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=98.83  E-value=1.1e-09  Score=74.44  Aligned_cols=62  Identities=24%  Similarity=0.348  Sum_probs=43.5

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCC--CCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSY--TSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~--~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||+|.||+++.++.++|+|||++.........  .......++..|.+|+.-
T Consensus       141 l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  204 (298)
T 3f66_A          141 MKYLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESL  204 (298)
T ss_dssp             HHHHHHTTCCCSCCSGGGEEECTTCCEEECSCGGGCCCSCGGGCBC-----CCBCGGGSCHHHH
T ss_pred             HHHHHhCCccCCCCchheEEECCCCCEEECcccccccccccchhccccccCCCCCccccChHHh
Confidence            46899999999999999999999999999999998755432221  122223344556666654

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=98.83  E-value=1.2e-09  Score=73.81  Aligned_cols=61  Identities=25%  Similarity=0.394  Sum_probs=42.3

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|++|+|.||+++.++.++|+|||++.......... .....++.+|.+||..
T Consensus       126 l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~-~~~~~~~~~y~aPE~~  186 (281)
T 3cc6_A          126 MAYLESINCVHRDIAVRNILVASPECVKLGDFGLSRYIEDEDYYK-ASVTRLPIKWMSPESI  186 (281)
T ss_dssp             HHHHHHTTCCCCCCSGGGEEEEETTEEEECCCCGGGCC----------CCCCCGGGCCHHHH
T ss_pred             HHHHHHCCcccCCCccceEEECCCCcEEeCccCCCcccccccccc-cccCCCCcceeCchhh
Confidence            468999999999999999999999999999999987654332222 2223345556666644

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=98.83  E-value=7.9e-10  Score=80.27  Aligned_cols=61  Identities=26%  Similarity=0.406  Sum_probs=45.3

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||++.||+++.++.++|+|||+++....... ........++.|++||.-
T Consensus       297 l~~LH~~~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~~~~-~~~~~~~~~~~y~aPE~~  357 (454)
T 1qcf_A          297 MAFIEQRNYIHRDLRAANILVSASLVCKIADFGLARVIEDNEY-TAREGAKFPIKWTAPEAI  357 (454)
T ss_dssp             HHHHHHTTCCCSSCSGGGEEECTTCCEEECSTTGGGGBCCHHH-HTTCSSSSCGGGSCHHHH
T ss_pred             HHHHHhCCccCCCCCHHHEEECCCCcEEEeeCCCceEcCCCce-eccCCCcccccccCHHHh
Confidence            4689999999999999999999999999999999976542221 122233445666666654

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=98.83  E-value=2.2e-09  Score=72.71  Aligned_cols=62  Identities=24%  Similarity=0.412  Sum_probs=44.5

Q ss_pred             CccchhCCccccCCCCCceEEe---cCCcEEEeeccccccccccCCC-----CCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIE---KNNKVVITDFGLFNFSKLYNSY-----TSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~---~~~~~kl~dfgla~~~~~~~~~-----~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||+|.||+++   ....++|+|||++.........     .......++..|++||..
T Consensus       118 l~~lH~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  187 (296)
T 3uzp_A          118 IEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTH  187 (296)
T ss_dssp             HHHHHHTTEECSCCCGGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCSCCCCSCTTTCCHHHH
T ss_pred             HHHHHhCCeeeCCCCHHHeEEecCCCCCeEEEeeCCCcccccccccccccccccccccccccccCChhhh
Confidence            4689999999999999999994   7788999999998765433221     112333455666666654

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=98.82  E-value=1.7e-09  Score=72.93  Aligned_cols=61  Identities=25%  Similarity=0.406  Sum_probs=44.8

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|++|++.||+++.++.++|+|||++......... ......++..|.+||..
T Consensus       122 l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~-~~~~~~~~~~y~aPE~~  182 (279)
T 1qpc_A          122 MAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYT-AREGAKFPIKWTAPEAI  182 (279)
T ss_dssp             HHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECSSSCEE-CCTTCCCCTTTSCHHHH
T ss_pred             HHHHHHCCeeccCCCHhhEEEcCCCCEEECCCcccccccCcccc-cccCCCCccCccChhhh
Confidence            46899999999999999999999999999999998765433222 22223345556666644

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=98.82  E-value=1.2e-09  Score=74.49  Aligned_cols=62  Identities=21%  Similarity=0.390  Sum_probs=44.9

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|++|++.||+++.++.++|+|||++................++..|.+||..
T Consensus       122 l~~LH~~~i~H~dlkp~NIl~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  183 (305)
T 2wtk_C          122 LEYLHSQGIVHKDIKPGNLLLTTGGTLKISALGVAEALHPFAADDTCRTSQGSPAFQPPEIA  183 (305)
T ss_dssp             HHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECCTTCSSCEECCCCSCGGGCCHHHH
T ss_pred             HHHHHHCCeeecCCCcccEEEcCCCcEEeeccccccccCccccccccccCCCCCCCcChhhc
Confidence            46899999999999999999999999999999998765432222222233345556666543

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=98.82  E-value=1.1e-09  Score=74.54  Aligned_cols=39  Identities=38%  Similarity=0.733  Sum_probs=35.4

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||+++++|+||+|.||+++.++.++|+|||++....
T Consensus       113 l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~  151 (288)
T 1ob3_A          113 IAYCHDRRVLHRDLKPQNLLINREGELKIADFGLARAFG  151 (288)
T ss_dssp             HHHHHHTTCCCSCCCGGGEEECTTSCEEECCTTHHHHHC
T ss_pred             HHHHHHCCeecCCCCHHHEEEcCCCCEEEeECccccccC
Confidence            468999999999999999999999999999999987543

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=98.82  E-value=1.5e-09  Score=77.54  Aligned_cols=39  Identities=28%  Similarity=0.649  Sum_probs=35.0

Q ss_pred             CccchhCCccccCCCCCceEEe-cCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIE-KNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~-~~~~~kl~dfgla~~~~   39 (93)
                      |.|||+++++|+||+|.||+++ .++.++|+|||+++...
T Consensus       154 L~~LH~~~ivHrDlkp~Nill~~~~~~~kL~DFG~a~~~~  193 (394)
T 4e7w_A          154 LAYIHSIGICHRDIKPQNLLLDPPSGVLKLIDFGSAKILI  193 (394)
T ss_dssp             HHHHHHTTEECSCCSGGGEEEETTTTEEEECCCTTCEECC
T ss_pred             HHHHHHCCccCCCCCHHHEEEcCCCCcEEEeeCCCccccc
Confidence            4689999999999999999998 78899999999987653

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=98.82  E-value=1.2e-09  Score=75.26  Aligned_cols=61  Identities=26%  Similarity=0.490  Sum_probs=44.9

Q ss_pred             CccchhC---CccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHAR---GILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~---~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+.   +++|+||+|.||+++.++.++|+|||++.......... .....++.+|.+|+.-
T Consensus       144 l~~lH~~~~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~-~~~~~gt~~y~aPE~~  207 (326)
T 3uim_A          144 LAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHV-TTAVRGTIGHIAPEYL  207 (326)
T ss_dssp             HHHHHHSSSSCEECCCCSGGGEEECTTCCEEECCCSSCEECCSSSSCE-ECCCCSCGGGCCHHHH
T ss_pred             HHHHHhCCCCCeEeCCCchhhEEECCCCCEEeccCccccccCcccccc-cccccCCcCccCHHHh
Confidence            4689999   99999999999999999999999999987654333222 2223345566666643

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=98.82  E-value=1e-09  Score=73.68  Aligned_cols=61  Identities=21%  Similarity=0.367  Sum_probs=44.7

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+.+++|++|+|.||+++.++.++|+|||++........... ....++..|.||+.-
T Consensus       117 l~~lH~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~-~~~~~~~~y~aPE~~  177 (268)
T 3sxs_A          117 MAFLESHQFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQYVSS-VGTKFPVKWSAPEVF  177 (268)
T ss_dssp             HHHHHHTTEEESSCSGGGEEECTTCCEEECCTTCEEECCTTCEEEC-CSCCCCGGGCCHHHH
T ss_pred             HHHHHHCCeecCCcCcceEEECCCCCEEEccCccceecchhhhhcc-cCCCcCcccCCHHHH
Confidence            4689999999999999999999999999999999876543332222 222334456666654

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=98.82  E-value=1.3e-09  Score=77.15  Aligned_cols=57  Identities=28%  Similarity=0.362  Sum_probs=42.9

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||+|.||+++.++.++|+|||+++.....     .....++.+|.+||.-
T Consensus       141 L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~-----~~~~~~t~~y~aPE~~  197 (367)
T 1cm8_A          141 LRYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLARQADSE-----MTGYVVTRWYRAPEVI  197 (367)
T ss_dssp             HHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECCSS-----CCSSCSCGGGCCTHHH
T ss_pred             HHHHHHCCccccCcCHHHEEEcCCCCEEEEeeecccccccc-----cCcCcCCCCcCCHHHH
Confidence            46899999999999999999999999999999998764321     1122334556666543

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=98.81  E-value=2.1e-09  Score=77.39  Aligned_cols=59  Identities=20%  Similarity=0.282  Sum_probs=41.5

Q ss_pred             CccchhCCccccCCCCCceEEecC-CcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKN-NKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~-~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||++.||+++.+ ..++|+|||+++.......  .....+ +.+|.+||.-
T Consensus       169 L~~LH~~~ivHrDlkp~NILl~~~~~~~kl~DFG~a~~~~~~~~--~~~~~~-t~~y~aPE~~  228 (420)
T 1j1b_A          169 LAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEP--NVSYIC-SRYYRAPELI  228 (420)
T ss_dssp             HHHHHTTTEECSCCSGGGEEEETTTTEEEECCCTTCEECCTTCC--CCSCCS-CTTSCCHHHH
T ss_pred             HHHHHHCCccccCCChhhEEEeCCCCeEEeccchhhhhcccCCC--ceeeee-CCCcCCHHHH
Confidence            468999999999999999999854 5689999999875432221  122223 4455555543

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=98.81  E-value=8.4e-10  Score=74.22  Aligned_cols=61  Identities=23%  Similarity=0.394  Sum_probs=44.5

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+.+++|+||+|.||+++.++.++|+|||++.......... .....++..|.+|+.-
T Consensus       119 l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~-~~~~~~~~~y~aPE~~  179 (269)
T 4hcu_A          119 MAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTS-STGTKFPVKWASPEVF  179 (269)
T ss_dssp             HHHHHHTTCCCSCCCGGGEEECGGGCEEECCTTGGGGBCCHHHHS-TTSTTCCGGGCCHHHH
T ss_pred             HHHHHhCCeecCCcchheEEEcCCCCEEecccccccccccccccc-ccCcccccccCCHHHh
Confidence            468999999999999999999988999999999987654332222 2222334556666654

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=98.80  E-value=1.1e-09  Score=74.01  Aligned_cols=61  Identities=25%  Similarity=0.388  Sum_probs=44.6

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|++|+|.||+++.++.++|+|||++.......... ......+..|.+|+..
T Consensus       133 l~~lH~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~-~~~~~~~~~y~aPE~~  193 (283)
T 3gen_A          133 MEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTS-SVGSKFPVRWSPPEVL  193 (283)
T ss_dssp             HHHHHHTTCCCSSCSGGGEEECTTSCEEECSTTGGGGBCCHHHHS-TTSTTSCGGGCCHHHH
T ss_pred             HHHHHHCCccCCCCccceEEEcCCCCEEEcccccccccccccccc-ccCCccCcccCCHHHh
Confidence            468999999999999999999999999999999987654332222 2222334556666654

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=98.80  E-value=3.4e-09  Score=74.13  Aligned_cols=62  Identities=16%  Similarity=0.266  Sum_probs=44.2

Q ss_pred             CccchhCCccccCCCCCceEEecCC--cEEEeeccccccccccCCCC-----CCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNN--KVVITDFGLFNFSKLYNSYT-----SNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~--~~kl~dfgla~~~~~~~~~~-----~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||+|.||+++.++  .++|+|||+++.........     ......++..|.+||..
T Consensus       172 L~~LH~~~ivH~Dikp~NIl~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  240 (352)
T 2jii_A          172 LEFLHENEYVHGNVTAENIFVDPEDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLH  240 (352)
T ss_dssp             HHHHHHTTCBCSCCCGGGEEEETTEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHH
T ss_pred             HHHHHhCCccCCCCCHHHEEEcCCCCceEEEecCcceeeccCCCccccccccccccccCCccccCHHHH
Confidence            4689999999999999999999887  89999999987654322211     11222445566666644

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=98.80  E-value=1.6e-09  Score=74.61  Aligned_cols=62  Identities=29%  Similarity=0.276  Sum_probs=42.2

Q ss_pred             CccchhC--------CccccCCCCCceEEecCCcEEEeeccccccccccCCCC--CCCCCCCCCCCChhhhh
Q psy700            1 MGYLHAR--------GILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYT--SNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~--------~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~--~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||..        +++|+||+|.||+++.++.++|+|||++..........  ......++.+|++||.-
T Consensus       147 l~~lH~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  218 (337)
T 3mdy_A          147 LCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVKFISDTNEVDIPPNTRVGTKRYMPPEVL  218 (337)
T ss_dssp             HHHHHSCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEECC---------CCSSCSCGGGCCHHHH
T ss_pred             HHHHHHhhhhhccCCCEEecccchHHEEECCCCCEEEEeCCCceeeccccccccCCCCCCccCcceeChhhc
Confidence            3578887        99999999999999999999999999986543222211  11223345566666644

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=98.79  E-value=1.6e-09  Score=76.95  Aligned_cols=57  Identities=25%  Similarity=0.335  Sum_probs=35.2

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+.+++|+||+|.||+++.++.++|+|||+++.....     .....++.+|.+|+.-
T Consensus       145 L~~LH~~givH~Dlkp~NIll~~~~~~kL~DFG~a~~~~~~-----~~~~~~t~~y~aPE~~  201 (367)
T 2fst_X          145 LKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTADE-----MTGYVATRWYRAPEIM  201 (367)
T ss_dssp             HHHHHHTTCCCCCCCGGGEEECTTCCEEECC--------------------CCCTTCCHHHH
T ss_pred             HHHHHHCCeeeCCCCHhhEEECCCCCEEEeecccccccccc-----CCCcCcCcCccChHHH
Confidence            46899999999999999999999999999999998754321     1122334555666543

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=98.79  E-value=1.5e-09  Score=77.78  Aligned_cols=58  Identities=29%  Similarity=0.378  Sum_probs=38.9

Q ss_pred             CccchhCCccccCCCCCceEEec---CCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEK---NNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~---~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||+.+++|+||++.||+++.   ++.++|+|||+++.......   .....++.+|++||.
T Consensus       174 L~~LH~~~ivHrDlkp~Nill~~~~~~~~~kl~DFG~a~~~~~~~~---~~~~~gt~~y~aPE~  234 (400)
T 1nxk_A          174 IQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNS---LTTPCYTPYYVAPEV  234 (400)
T ss_dssp             HHHHHHTTEECCCCCGGGEEESSSSTTCCEEECCCTTCEECC--------------CTTCCGGG
T ss_pred             HHHHHHCCccccCcCcceEEEecCCCCccEEEEecccccccCCCCc---cccCCCCCCccCHhh
Confidence            46899999999999999999986   67899999999875432221   122233455555554

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=98.79  E-value=1.2e-09  Score=77.19  Aligned_cols=57  Identities=25%  Similarity=0.330  Sum_probs=42.8

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||+|.||+++.++.++|+|||+++.....     .....++..|++||.-
T Consensus       154 L~~LH~~~ivHrDlkp~NIll~~~g~~kL~DFg~a~~~~~~-----~~~~~gt~~y~aPE~~  210 (350)
T 1rdq_E          154 FEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR-----TWTLCGTPEALAPEII  210 (350)
T ss_dssp             HHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECSSC-----BCCCEECGGGCCHHHH
T ss_pred             HHHHHHCCcccccCccceEEECCCCCEEEcccccceeccCC-----cccccCCccccCHHHh
Confidence            46899999999999999999999999999999998754321     1122344555666543

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=98.79  E-value=3.1e-09  Score=78.48  Aligned_cols=62  Identities=23%  Similarity=0.428  Sum_probs=45.3

Q ss_pred             CccchhCCccccCCCCCceEE---ecCCcEEEeeccccccccccCCC-----CCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFI---EKNNKVVITDFGLFNFSKLYNSY-----TSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill---~~~~~~kl~dfgla~~~~~~~~~-----~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||.++++|+||++.||++   ...+.++|+|||+++........     .......++..|++|+.-
T Consensus       116 L~yLH~~gIvHrDIKP~NILl~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~  185 (483)
T 3sv0_A          116 VEFVHSKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASVNTH  185 (483)
T ss_dssp             HHHHHHTTEECCCCCGGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCCCCCCSCTTTCCHHHH
T ss_pred             HHHHHHCCEeecccCcceEEEecCCCCCeEEEEeCCcceeccCCccccccccccccccCCCccccCHHHh
Confidence            468999999999999999999   47788999999998765433221     122234456666666654

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=98.79  E-value=1.5e-09  Score=77.16  Aligned_cols=62  Identities=27%  Similarity=0.367  Sum_probs=35.9

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCC-CCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYT-SNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~-~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||..+++|+||++.||+++.++.++|+|||+++......... .......+..|++||.-
T Consensus       160 L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~y~aPE~~  222 (373)
T 2qol_A          160 MKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLGRVLEDDPEAAYTTRGGKIPIRWTSPEAI  222 (373)
T ss_dssp             HHHHHHTTCCCSCCCGGGEEECTTCCEEECCC----------------------CTTSCHHHH
T ss_pred             HHHHHHCCeeCCCCCcceEEEcCCCCEEECcCccccccccCCccceeccCCCcCCCccChhhh
Confidence            468999999999999999999999999999999987654332211 11122234556666654

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=98.79  E-value=1.4e-09  Score=76.08  Aligned_cols=59  Identities=24%  Similarity=0.402  Sum_probs=44.1

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||.++++|+||+|.||+++.++.++|+|||++.........   ....++.+|++||.-
T Consensus       143 L~~LH~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~a~~~~~~~~~---~~~~gt~~y~aPE~~  201 (335)
T 3dls_A          143 VGYLRLKDIIHRDIKDENIVIAEDFTIKLIDFGSAAYLERGKLF---YTFCGTIEYCAPEVL  201 (335)
T ss_dssp             HHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECCTTCCB---CEECSCGGGCCHHHH
T ss_pred             HHHHHhCCeEEeccCHHHEEEcCCCcEEEeecccceECCCCCce---eccCCCccccChhhh
Confidence            46899999999999999999999999999999998765432221   122345566666654

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=98.79  E-value=2.3e-09  Score=74.42  Aligned_cols=60  Identities=25%  Similarity=0.387  Sum_probs=44.2

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+.+++|+||+|.||+++.++.++|+|||++........  ......++.+|++||..
T Consensus       154 L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~  213 (321)
T 2c30_A          154 LAYLHAQGVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVP--KRKSLVGTPYWMAPEVI  213 (321)
T ss_dssp             HHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSSSC--CBCCCCSCGGGCCHHHH
T ss_pred             HHHHHHCCeecCCCCHHHEEECCCCcEEEeeeeeeeecccCcc--ccccccCCccccCHhhh
Confidence            4689999999999999999999999999999999865543221  12223345556666644

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=98.78  E-value=1.4e-09  Score=79.98  Aligned_cols=61  Identities=26%  Similarity=0.459  Sum_probs=45.7

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||++.||+++.++.++|+|||+++...... ........+++.|++||.-
T Consensus       331 L~~LH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~-~~~~~~~~~~~~y~aPE~~  391 (495)
T 1opk_A          331 MEYLEKKNFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDT-YTAHAGAKFPIKWTAPESL  391 (495)
T ss_dssp             HHHHHHTTEECSCCSGGGEEECGGGCEEECCTTCEECCTTCC-EECCTTCCCCGGGCCHHHH
T ss_pred             HHHHHhCCcccCCCChhhEEECCCCcEEEeecccceeccCCc-eeecCCCcCCcceeCHhHH
Confidence            468999999999999999999999999999999987654322 2222333445667776654

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=98.78  E-value=2.1e-09  Score=75.10  Aligned_cols=57  Identities=25%  Similarity=0.405  Sum_probs=41.7

Q ss_pred             CccchhCCccccCCCCCceEEec-------------------------CCcEEEeeccccccccccCCCCCCCCCCCCCC
Q psy700            1 MGYLHARGILHKDLKSKNIFIEK-------------------------NNKVVITDFGLFNFSKLYNSYTSNEKPSSPLG   55 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~-------------------------~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~   55 (93)
                      |.|||+++++|+||+|.||+++.                         ...++|+|||++.......     ....++..
T Consensus       150 L~~LH~~~ivHrDlkp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~-----~~~~gt~~  224 (360)
T 3llt_A          150 LNYLRKMSLTHTDLKPENILLDDPYFEKSLITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSDYH-----GSIINTRQ  224 (360)
T ss_dssp             HHHHHHTTEECSCCSGGGEEESCTTCCEEEEEEECTTTCCEEEEEEESCCCEEECCCTTCEETTSCC-----CSCCSCGG
T ss_pred             HHHHHHCCeeeCCCCcccEEEccccccccccchhcccccccccccccCCCCEEEEeccCceecCCCC-----cCccCccc
Confidence            46899999999999999999964                         6789999999987543221     12234555


Q ss_pred             CChhhhh
Q psy700           56 EGKEEEE   62 (93)
Q Consensus        56 ~~p~e~~   62 (93)
                      |++||.-
T Consensus       225 y~aPE~~  231 (360)
T 3llt_A          225 YRAPEVI  231 (360)
T ss_dssp             GCCHHHH
T ss_pred             ccCcHHH
Confidence            6666654

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=98.78  E-value=3.1e-09  Score=79.71  Aligned_cols=60  Identities=27%  Similarity=0.340  Sum_probs=44.3

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||+|.||+++.++.++|+|||+++.......  ......++.+|++||.-
T Consensus       302 L~~LH~~gIvHrDLKP~NILl~~~g~vkL~DFGla~~~~~~~~--~~~~~~GT~~Y~APE~l  361 (543)
T 3c4z_A          302 LEHLHQRNIIYRDLKPENVLLDDDGNVRISDLGLAVELKAGQT--KTKGYAGTPGFMAPELL  361 (543)
T ss_dssp             HHHHHHTTEECCCCCGGGEEECTTSCEEECCCTTCEECCTTCC--CBCCCCSCTTTSCHHHH
T ss_pred             HHHHHHcCCcccCCChHHEEEeCCCCEEEeecceeeeccCCCc--ccccccCCccccChhhh
Confidence            4689999999999999999999999999999999876442221  12223445556666544

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=98.78  E-value=2.2e-09  Score=74.24  Aligned_cols=62  Identities=35%  Similarity=0.510  Sum_probs=45.0

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCC-CCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSY-TSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~-~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+.+++|+||+|.||+++.++.++|+|||++......... .......++.+|.+|+.-
T Consensus       140 l~~lH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  202 (327)
T 3lxl_A          140 MEYLGSRRCVHRDLAARNILVESEAHVKIADFGLAKLLPLDKDYYVVREPGQSPIFWYAPESL  202 (327)
T ss_dssp             HHHHHHTTEECSCCSGGGEEEEETTEEEECCGGGCEECCTTCSEEECSSCCCSCGGGSCHHHH
T ss_pred             HHHHHhCCccCCCCChhhEEECCCCCEEEcccccceecccCCccceeeccCCccccccCHHHh
Confidence            46899999999999999999999999999999998765433222 122223345556666643

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=98.78  E-value=2.5e-09  Score=75.38  Aligned_cols=56  Identities=23%  Similarity=0.310  Sum_probs=42.8

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||+|.||+++.++.++|+|||++......      ....++.+|++||.-
T Consensus       167 L~~LH~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~------~~~~gt~~y~aPE~~  222 (348)
T 1u5q_A          167 LAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPA------NSFVGTPYWMAPEVI  222 (348)
T ss_dssp             HHHHHHTTCBCCCCSGGGEEEETTTEEEECCCTTCBSSSSB------CCCCSCGGGCCHHHH
T ss_pred             HHHHHhCCeeeCCCCHHHEEECCCCCEEEeeccCceecCCC------CcccCCcceeCHhhh
Confidence            46899999999999999999999999999999998654321      122344556666643

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=98.77  E-value=2.5e-09  Score=73.62  Aligned_cols=58  Identities=28%  Similarity=0.477  Sum_probs=41.6

Q ss_pred             CccchhCCccccCCCCCceEEecCC-cEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNN-KVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~-~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||+++++|+||++.||+++..+ .++|+|||++.........   ....++.+|.+|+.
T Consensus       143 l~~lH~~~ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~~---~~~~~~~~y~aPE~  201 (330)
T 3nsz_A          143 LDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEY---NVRVASRYFKGPEL  201 (330)
T ss_dssp             HHHHHHTTEECCCCSGGGEEEETTTTEEEECCCTTCEECCTTCCC---CSCCSCGGGCCHHH
T ss_pred             HHHHHhCCeeeCCCCHHHEEEcCCCCEEEEEeCCCceEcCCCCcc---ccccccccccChhh
Confidence            4689999999999999999998665 8999999998754432221   12233444555554

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=98.77  E-value=1.5e-09  Score=77.23  Aligned_cols=62  Identities=21%  Similarity=0.282  Sum_probs=36.9

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCC--CCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYT--SNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~--~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||++.||+++.++.++|+|||+++.........  .......+..|++||.-
T Consensus       205 L~~LH~~~ivHrDlkp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  268 (373)
T 3c1x_A          205 MKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESL  268 (373)
T ss_dssp             HHHHHHTTCCCSCCCGGGEEECTTCCEEECCC---------------------CCGGGSCHHHH
T ss_pred             HHHHHHCCEecCccchheEEECCCCCEEEeeccccccccccccccccccCCCCCcccccChHHh
Confidence            468999999999999999999999999999999987543222111  12223345566666654

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=98.77  E-value=4.2e-09  Score=74.54  Aligned_cols=59  Identities=25%  Similarity=0.362  Sum_probs=41.8

Q ss_pred             CccchhCCccccCCCCCceEEecC---CcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKN---NKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~---~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||.++++|+||+|.||+++..   ..++|+|||++........   .....++.+|.+||.-
T Consensus       141 l~~lH~~~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~~~~~~~~---~~~~~gt~~y~aPE~~  202 (362)
T 2bdw_A          141 IAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEA---WHGFAGTPGYLSPEVL  202 (362)
T ss_dssp             HHHHHHTTCBCCCCSGGGEEESCSSTTCCEEECCCTTCBCCTTCCS---CCCSCSCTTTCCHHHH
T ss_pred             HHHHHHCCeEeccCchHHEEEecCCCCCCEEEeecCcceEecCCcc---cccCCCCccccCHHHH
Confidence            468999999999999999999754   3599999999875542221   1223345556666543

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=98.77  E-value=2.1e-09  Score=76.01  Aligned_cols=59  Identities=27%  Similarity=0.287  Sum_probs=37.4

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||+|.||+++.++.++|+|||+++......   ......++.+|.+||.-
T Consensus       140 l~~lH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~---~~~~~~gt~~y~aPE~~  198 (371)
T 2xrw_A          140 IKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSF---MMTPYVVTRYYRAPEVI  198 (371)
T ss_dssp             HHHHHHTTCCCSCCCGGGEEECTTSCEEECCCCC-------------------CTTCCHHHH
T ss_pred             HHHHHHCCeecccCCHHHEEEcCCCCEEEEEeeccccccccc---ccCCceecCCccCHHHh
Confidence            468999999999999999999999999999999987543221   11122344556666544

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=98.77  E-value=3.2e-09  Score=72.90  Aligned_cols=59  Identities=24%  Similarity=0.413  Sum_probs=43.7

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||..+++|++|++.||+++.++.++|+|||++.......   ......++.+|.+||..
T Consensus       133 l~~lH~~gi~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~---~~~~~~~~~~y~aPE~~  191 (326)
T 1blx_A          133 LDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQM---ALTSVVVTLWYRAPEVL  191 (326)
T ss_dssp             HHHHHHTTCCCCCCCGGGEEECTTCCEEECSCCSCCCCCGGG---GGCCCCCCCTTCCHHHH
T ss_pred             HHHHHHCCceeccCCHHHeEEcCCCCEEEecCcccccccCCC---CccccccccceeCHHHH
Confidence            468999999999999999999999999999999986544222   11223345556666643

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=98.77  E-value=3.9e-09  Score=70.95  Aligned_cols=59  Identities=29%  Similarity=0.483  Sum_probs=43.5

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|++|+|.||+++.++.++|+|||++........   .....++.+|.||+..
T Consensus       135 l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~---~~~~~~~~~y~aPE~~  193 (284)
T 2a19_B          135 VDYIHSKKLINRDLKPSNIFLVDTKQVKIGDFGLVTSLKNDGK---RTRSKGTLRYMSPEQI  193 (284)
T ss_dssp             HHHHHHTTEECSCCSGGGEEEEETTEEEECCCTTCEESSCCSC---CCCCCSCCTTSCHHHH
T ss_pred             HHHHHhCCeeeccCCHHHEEEcCCCCEEECcchhheecccccc---ccccCCcccccChhhh
Confidence            4689999999999999999999999999999999865543221   1222345556666643

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=98.77  E-value=2.3e-09  Score=80.91  Aligned_cols=62  Identities=27%  Similarity=0.402  Sum_probs=41.6

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCC-CCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSY-TSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~-~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||++.||+++.++.++|+|||+++........ ........++.|++||.-
T Consensus       449 L~~LH~~~iiHrDlkp~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~y~APE~~  511 (613)
T 2ozo_A          449 MKYLEEKNFVHRNLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECI  511 (613)
T ss_dssp             HHHHHHTTCCCSCCSGGGEEEEETTEEEECCCSTTTTCC--------------CCTTSCHHHH
T ss_pred             HHHHHHCCEEcCcCCHHHEEEcCCCcEEEeeccCcccccCCCceeeeccCCCCccceeCHhhh
Confidence            46899999999999999999999999999999999765432221 112222335566666644

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=98.76  E-value=2e-09  Score=81.34  Aligned_cols=59  Identities=24%  Similarity=0.329  Sum_probs=43.5

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||+|.||+++.++.++|+|||++.........  .. ..++.+|++||.-
T Consensus       299 L~yLH~~gIvHrDLKPeNILld~~g~vKL~DFGla~~~~~~~~~--~~-~~GT~~Y~APEvl  357 (576)
T 2acx_A          299 LEDLHRERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQTI--KG-RVGTVGYMAPEVV  357 (576)
T ss_dssp             HHHHHHTTEECCCCCGGGEEECTTSCEEECCCTTCEECCTTCCE--EC-CCSCGGGCCHHHH
T ss_pred             HHHHHHCCEeccCCchheEEEeCCCCeEEEecccceecccCccc--cc-cCCCccccCHHHH
Confidence            46899999999999999999999999999999998765432211  11 2344555555543

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=98.76  E-value=1.6e-09  Score=75.12  Aligned_cols=60  Identities=23%  Similarity=0.411  Sum_probs=40.6

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+.+++|+||+|.||+++.++.++|+|||++.........  .....++.+|++||.-
T Consensus       113 L~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~--~~~~~~t~~y~aPE~~  172 (324)
T 3mtl_A          113 LAYCHRQKVLHRDLKPQNLLINERGELKLADFGLARAKSIPTKT--YDNEVVTLWYRPPDIL  172 (324)
T ss_dssp             HHHHHHTTEEESSCCGGGEEECTTCCEEECSSSEEECC--------------CGGGCCHHHH
T ss_pred             HHHHHHCCccCCCcCHHHEEECCCCCEEEccCcccccccCCccc--cccccCcccccChhhh
Confidence            46899999999999999999999999999999998654322211  1222335556666643

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=98.76  E-value=4.1e-09  Score=74.67  Aligned_cols=58  Identities=26%  Similarity=0.371  Sum_probs=41.9

Q ss_pred             CccchhCCccccCCCCCceEEe-cCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIE-KNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~-~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||+.+++|+||+|.||+++ .++.++|+|||++........  ... ..++.+|.+||.
T Consensus       154 L~~LH~~gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~--~~~-~~~t~~y~aPE~  212 (383)
T 3eb0_A          154 VGFIHSLGICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSEP--SVA-YICSRFYRAPEL  212 (383)
T ss_dssp             HHHHHTTTEECSCCCGGGEEEETTTTEEEECCCTTCEECCTTSC--CCC-CCCCSSCCCHHH
T ss_pred             HHHHHHCcCccCccCHHHEEEcCCCCcEEEEECCCCcccCCCCC--CcC-cccCCCccCHHH
Confidence            4689999999999999999997 578899999999875432221  122 223445555554

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=98.76  E-value=2e-09  Score=74.82  Aligned_cols=39  Identities=33%  Similarity=0.649  Sum_probs=35.5

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||+++++|+||++.||+++.++.++|+|||++....
T Consensus       125 L~~LH~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~  163 (353)
T 2b9h_A          125 VKVLHGSNVIHRDLKPSNLLINSNCDLKVCDFGLARIID  163 (353)
T ss_dssp             HHHHHHTTEECSCCCGGGEEECTTCCEEECCCTTCEECC
T ss_pred             HHHHHHCCeecCCCCHHHeEEcCCCcEEEEecccccccc
Confidence            468999999999999999999999999999999987654

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=98.75  E-value=4e-09  Score=73.42  Aligned_cols=58  Identities=19%  Similarity=0.246  Sum_probs=42.0

Q ss_pred             ccch--hCCccccCCCCCceEEec-CCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            2 GYLH--ARGILHKDLKSKNIFIEK-NNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         2 ~~lh--s~~iihrdlk~~nill~~-~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      .|||  +.+++|+||+|.||+++. ++.++|+|||++.........   ....++.+|.+||.-
T Consensus       143 ~~lH~~~~~ivH~Dlkp~NIll~~~~~~~kl~Dfg~a~~~~~~~~~---~~~~gt~~y~aPE~~  203 (360)
T 3e3p_A          143 GCLHLPSVNVCHRDIKPHNVLVNEADGTLKLCDFGSAKKLSPSEPN---VAYICSRYYRAPELI  203 (360)
T ss_dssp             HHHTSTTTCCBCSCCCGGGEEEETTTTEEEECCCTTCBCCCTTSCC---CSTTSCGGGCCHHHH
T ss_pred             HHHhCCCCCeecCcCCHHHEEEeCCCCcEEEeeCCCceecCCCCCc---ccccCCcceeCHHHH
Confidence            5788  999999999999999986 789999999998765432221   122335556666643

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=98.75  E-value=5.7e-09  Score=76.13  Aligned_cols=60  Identities=22%  Similarity=0.215  Sum_probs=42.8

Q ss_pred             CccchhCCccccCCCCCceEEec---CCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEK---NNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~---~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||+|.||+++.   .+.++|+|||++........  ......++.+|++||.-
T Consensus       123 L~~lH~~givHrDlKp~NIll~~~~~~~~vkL~DFG~a~~~~~~~~--~~~~~~gt~~Y~APE~l  185 (444)
T 3soa_A          123 VLHCHQMGVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQ--AWFGFAGTPGYLSPEVL  185 (444)
T ss_dssp             HHHHHHTTCBCCCCSSTTEEESBSSTTCCEEECCCSSCBCCCTTCC--BCCCSCSCGGGCCHHHH
T ss_pred             HHHHHHCCccccCCCHHHEEEeccCCCCcEEEccCceeEEecCCCc--eeecccCCcccCCHHHh
Confidence            46899999999999999999983   46799999999865542221  11223445566666654

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=98.75  E-value=1.7e-09  Score=78.61  Aligned_cols=61  Identities=26%  Similarity=0.454  Sum_probs=40.4

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||++.||+++.++.++|+|||+++...... ........++..|++||..
T Consensus       293 l~~LH~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~-~~~~~~~~~~~~y~aPE~~  353 (452)
T 1fmk_A          293 MAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNE-YTARQGAKFPIKWTAPEAA  353 (452)
T ss_dssp             HHHHHHTTCCCSCCSGGGEEECGGGCEEECCCCTTC---------------CCGGGSCHHHH
T ss_pred             HHHHHhCCeeCCCCChhhEEECCCCCEEECCCccceecCCCc-eecccCCcccccccCHhHH
Confidence            468999999999999999999988999999999987654322 2222233345666666643

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=98.75  E-value=4.3e-09  Score=73.18  Aligned_cols=59  Identities=31%  Similarity=0.308  Sum_probs=42.3

Q ss_pred             CccchhCCccccCCCCCceEEecCC----cEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNN----KVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~----~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+.+++|+||+|.||++...+    .++|+|||++........   .....++.+|++||.-
T Consensus       127 l~~lH~~~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~~~~~~~~---~~~~~gt~~y~aPE~~  189 (326)
T 2y0a_A          127 VYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNE---FKNIFGTPEFVAPEIV  189 (326)
T ss_dssp             HHHHHHTTEECCCCCGGGEEESCSSSSSCCEEECCCTTCEECCTTSC---CCCCCSCTTTCCHHHH
T ss_pred             HHHHHHCCeEcCCCCHHHEEEecCCCCCCCEEEEECCCCeECCCCCc---cccccCCcCcCCceee
Confidence            4689999999999999999998766    799999999876542221   1222345556666543

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=98.75  E-value=4e-09  Score=77.75  Aligned_cols=59  Identities=24%  Similarity=0.345  Sum_probs=43.5

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+.+++|+||+|.||+++.++.++|+|||++........   .....++.+|++||.-
T Consensus       129 L~~LH~~givHrDLkp~NIll~~~~~vkL~DFG~a~~~~~~~~---~~~~~gt~~y~aPE~~  187 (476)
T 2y94_A          129 VDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEF---LRTSCGSPNYAAPEVI  187 (476)
T ss_dssp             HHHHHTTTEECSCCSGGGEEECTTCCEEECCCSSCEECCTTCC---BCCCCSCSTTCCHHHH
T ss_pred             HHHHHHCCCCcccccHHHEEEecCCCeEEEeccchhhcccccc---ccccCCCcCeEChhhc
Confidence            4689999999999999999999999999999999876543221   1222344555555543

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=98.75  E-value=3.3e-09  Score=71.99  Aligned_cols=62  Identities=27%  Similarity=0.392  Sum_probs=44.9

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCC-CCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYT-SNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~-~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+.+++|++|+|.||+++.++.++|+|||++.......... ......++..|.+||.-
T Consensus       123 l~~lH~~~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  185 (287)
T 1u59_A          123 MKYLEEKNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECI  185 (287)
T ss_dssp             HHHHHHTTEECCCCSGGGEEEEETTEEEECCCTTCEECTTCSCEECCCCSSCCCGGGCCHHHH
T ss_pred             HHHHHHCCEeeCCCchheEEEcCCCCEEECcccceeeeccCcceeeccccccccccccCHHHh
Confidence            468999999999999999999999999999999987654332221 12222335556666654

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=98.74  E-value=2.4e-09  Score=73.45  Aligned_cols=61  Identities=23%  Similarity=0.346  Sum_probs=38.8

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|++|++.||+++ ++.++|+|||++................++.+|.|||..
T Consensus       140 L~~LH~~~ivH~dlkp~NIl~~-~~~~kL~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  200 (313)
T 3cek_A          140 VHTIHQHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAI  200 (313)
T ss_dssp             HHHHHHTTCCCCCCCGGGEEEE-TTEEEECCCSSSCC--------------CCGGGCCHHHH
T ss_pred             HHHHHHCCceecCCCcccEEEE-CCeEEEeeccccccccCccccccccCCCCCCCcCCHHHH
Confidence            4689999999999999999996 478999999998765433322222223345566666654

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=98.74  E-value=1.8e-09  Score=81.83  Aligned_cols=62  Identities=24%  Similarity=0.386  Sum_probs=41.9

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCC-CCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSY-TSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~-~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||++.||+++..+.++|+|||+++........ .......++..|++||.-
T Consensus       482 L~yLH~~~iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~~~~~~t~~y~APE~~  544 (635)
T 4fl3_A          482 MKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECI  544 (635)
T ss_dssp             HHHHHHTTCCCSCCSGGGEEEEETTEEEECCTTHHHHTTC-------------CGGGSCHHHH
T ss_pred             HHHHHHCCEeCCCCChHhEEEeCCCCEEEEEcCCccccccCccccccccCCCCceeeeChhhh
Confidence            46899999999999999999999999999999998765433322 122222345556666654

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=98.74  E-value=3.3e-09  Score=73.38  Aligned_cols=60  Identities=32%  Similarity=0.457  Sum_probs=36.8

Q ss_pred             CccchhCC--ccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARG--ILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~--iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++  ++|+||++.||+++.++.++|+|||+++...... . ......++..|.+||.-
T Consensus       150 L~~LH~~~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~~~~-~-~~~~~~gt~~y~aPE~~  211 (309)
T 3p86_A          150 MNYLHNRNPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLKASTF-L-SSKSAAGTPEWMAPEVL  211 (309)
T ss_dssp             HHHHHTSSSCCCCTTCCGGGEEECTTCCEEECCCC-------------------CCTTSCHHHH
T ss_pred             HHHHHcCCCCEECCCCChhhEEEeCCCcEEECCCCCCccccccc-c-ccccCCCCccccChhhh
Confidence            46899999  9999999999999999999999999987543221 1 12223345556666544

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=98.74  E-value=4.1e-09  Score=72.78  Aligned_cols=57  Identities=26%  Similarity=0.384  Sum_probs=41.6

Q ss_pred             CccchhCCccccCCCCCceEE-------------------ecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFI-------------------EKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill-------------------~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||+++++|+||+|.||++                   .....++|+|||++.......     ....++..|.+||.
T Consensus       136 L~~lH~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~-----~~~~gt~~y~aPE~  210 (355)
T 2eu9_A          136 LRFLHENQLTHTDLKPENILFVNSEFETLYNEHKSCEEKSVKNTSIRVADFGSATFDHEHH-----TTIVATRHYRPPEV  210 (355)
T ss_dssp             HHHHHTTTEECCCCCGGGEEESCCCEEEEECCC-CCCEEEESCCCEEECCCTTCEETTSCC-----CSSCSCGGGCCHHH
T ss_pred             HHHHHHCCcccCCCCHHHEEEecccccccccccccccccccCCCcEEEeecCccccccccc-----cCCcCCCcccCCee
Confidence            468999999999999999999                   556789999999986533211     12234555666664


Q ss_pred             h
Q psy700           62 E   62 (93)
Q Consensus        62 ~   62 (93)
                      -
T Consensus       211 ~  211 (355)
T 2eu9_A          211 I  211 (355)
T ss_dssp             H
T ss_pred             e
Confidence            4

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=98.73  E-value=3.2e-09  Score=77.08  Aligned_cols=57  Identities=25%  Similarity=0.458  Sum_probs=41.8

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||++.||+++.++.++|+|||+++......     .....+..|++||.-
T Consensus       302 l~~LH~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~-----~~~~~~~~y~aPE~~  358 (450)
T 1k9a_A          302 MEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQ-----DTGKLPVKWTAPEAL  358 (450)
T ss_dssp             HHHHHHTTEECSCCCGGGEEECTTSCEEECCCTTCEECC-----------CCCTTTSCHHHH
T ss_pred             HHHHHhCCeeCCCCCHhhEEECCCCCEEEeeCCCcccccccc-----cCCCCCcceeCHHHh
Confidence            468999999999999999999999999999999987433211     112345566666654

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=98.73  E-value=3e-09  Score=75.16  Aligned_cols=59  Identities=25%  Similarity=0.310  Sum_probs=36.4

Q ss_pred             CccchhCCccccCCCCCceEEecCCc--EEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNK--VVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~--~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|++|+|.||+++....  ++|+|||+++.......  ... ..++.+|.+|+.-
T Consensus       129 L~~LH~~~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~~~~~~--~~~-~~gt~~y~aPE~~  189 (361)
T 3uc3_A          129 VSYCHSMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQ--PKS-TVGTPAYIAPEVL  189 (361)
T ss_dssp             HHHHHHTTCCSCCCCGGGEEECSSSSCCEEECCCCCC------------------CTTSCHHHH
T ss_pred             HHHHHHCCcccCCCCHHHEEEcCCCCceEEEeecCccccccccCC--CCC-CcCCCCcCChhhh
Confidence            46899999999999999999986654  99999999864322221  122 2344555555543

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=98.73  E-value=2.7e-09  Score=72.11  Aligned_cols=62  Identities=27%  Similarity=0.481  Sum_probs=43.4

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCC-CCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSY-TSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~-~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||.++++|++|+|.||+++.++.++|+|||++......... .......++..|.+|+..
T Consensus       134 l~~lH~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  196 (291)
T 1u46_A          134 MGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESL  196 (291)
T ss_dssp             HHHHHHTTEECSCCCGGGEEEEETTEEEECCCTTCEECCC-CCEEEC-----CCGGGCCHHHH
T ss_pred             HHHHHhCCcccCCCchheEEEcCCCCEEEccccccccccccccchhhhccCCCCceeeCchhh
Confidence            46899999999999999999999999999999998765433221 122223345567777654

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=98.73  E-value=1.7e-09  Score=74.81  Aligned_cols=62  Identities=19%  Similarity=0.234  Sum_probs=41.9

Q ss_pred             CccchhCCccccCCCCCceEEec---CCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEK---NNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~---~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+.+++|++|++.||+++.   ...++|+|||++................++.+|.+||.-
T Consensus       153 l~~LH~~~i~H~dlkp~NIli~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  217 (327)
T 2yfx_A          153 CQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAF  217 (327)
T ss_dssp             HHHHHHTTCCCSCCCGGGEEESCSSTTCCEEECCCHHHHHHHC------CCGGGSCGGGCCHHHH
T ss_pred             HHHHhhCCeecCcCCHhHEEEecCCCcceEEECccccccccccccccccCCCcCCCcceeCHhHh
Confidence            46899999999999999999983   446999999998755433332223333345566666654

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=98.73  E-value=4.3e-09  Score=71.03  Aligned_cols=58  Identities=21%  Similarity=0.375  Sum_probs=40.7

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||..+++|++|+|.||+++.++.++|+|||++.......    .....++..|.+|+.-
T Consensus       122 l~~LH~~~i~H~dlkp~Nili~~~~~~~l~Dfg~~~~~~~~~----~~~~~~~~~y~aPE~~  179 (279)
T 3fdn_A          122 LSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSR----RTDLCGTLDYLPPEMI  179 (279)
T ss_dssp             HHHHHTTTCEECCCCGGGEEECTTSCEEECSCCEESCC------------CCCCTTCCHHHH
T ss_pred             HHHHHhCCEecccCChHhEEEcCCCCEEEEeccccccCCccc----ccccCCCCCccCHhHh
Confidence            468999999999999999999999999999999875433222    1122334555666543

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=98.73  E-value=2.2e-09  Score=73.43  Aligned_cols=60  Identities=22%  Similarity=0.357  Sum_probs=40.4

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|++|+|.||+++.++.++|+|||++.........  .....++.+|.+|+.-
T Consensus       115 l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~--~~~~~~~~~y~aPE~~  174 (311)
T 4agu_A          115 VNFCHKHNCIHRDVKPENILITKHSVIKLCDFGFARLLTGPSDY--YDDEVATRWYRSPELL  174 (311)
T ss_dssp             HHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECC--------------GGGCCHHHH
T ss_pred             HHHHHHCCCcCCCCChhhEEEcCCCCEEEeeCCCchhccCcccc--cCCCcCCccccChHHH
Confidence            46899999999999999999999999999999998764422221  1122334556666543

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=98.73  E-value=2.4e-09  Score=73.49  Aligned_cols=39  Identities=26%  Similarity=0.534  Sum_probs=35.4

Q ss_pred             CccchhCC--ccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARG--ILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~--iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||..+  ++|+||+|.||+++.++.++|+|||++....
T Consensus       149 l~~LH~~~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~  189 (337)
T 3ll6_A          149 VQHMHRQKPPIIHRDLKVENLLLSNQGTIKLCDFGSATTIS  189 (337)
T ss_dssp             HHHHHTSSSCCBCCCCCGGGCEECTTSCEEBCCCTTCBCCS
T ss_pred             HHHHHhCCCCEEEccCCcccEEECCCCCEEEecCccceecc
Confidence            46899999  9999999999999999999999999987654

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=98.73  E-value=4.1e-09  Score=74.07  Aligned_cols=60  Identities=17%  Similarity=0.184  Sum_probs=42.0

Q ss_pred             CccchhCCccccCCCCCceEEecCC---cEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNN---KVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~---~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||+|.||+++...   .++|+|||++.........  .....++.+|++||.-
T Consensus       143 l~~lH~~~ivHrDlkp~NIl~~~~~~~~~vkl~Dfg~a~~~~~~~~~--~~~~~gt~~y~aPE~~  205 (351)
T 3c0i_A          143 LRYCHDNNIIHRDVKPHCVLLASKENSAPVKLGGFGVAIQLGESGLV--AGGRVGTPHFMAPEVV  205 (351)
T ss_dssp             HHHHHHTTEECSCCSGGGEEECSSSTTCCEEECCCTTCEECCTTSCB--CCCCCSCGGGCCHHHH
T ss_pred             HHHHHHCCceeccCChHHeEEecCCCCCcEEEecCcceeEecCCCee--ecCCcCCcCccCHHHH
Confidence            4689999999999999999997554   3999999998765432211  1222345556666543

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=98.73  E-value=3.2e-09  Score=73.33  Aligned_cols=62  Identities=32%  Similarity=0.456  Sum_probs=44.3

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCC-CCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSY-TSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~-~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+.+++|+||++.||+++.++.++|+|||++......... .......++..|.+|+.-
T Consensus       147 l~~LH~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~y~aPE~~  209 (318)
T 3lxp_A          147 MAYLHAQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAPECL  209 (318)
T ss_dssp             HHHHHHTTEECSCCSGGGEEECTTCCEEECCGGGCEECCTTCSEEEC---CCCCGGGCCHHHH
T ss_pred             HHHHHhCCccCCCCchheEEEcCCCCEEECCccccccccccccccccccCCCCCceeeChHHh
Confidence            46899999999999999999999999999999998765433221 122233345556666644

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=98.73  E-value=4.3e-09  Score=74.37  Aligned_cols=39  Identities=33%  Similarity=0.734  Sum_probs=33.2

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||+++++|+||+|.||+++.++.++|+|||+++...
T Consensus       157 L~~LH~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~  195 (371)
T 4exu_A          157 LKYIHSAGVVHRDLKPGNLAVNEDCELKILDFGLARHAD  195 (371)
T ss_dssp             HHHHHHTTCCCSCCCGGGEEECTTCCEEECSTTCC----
T ss_pred             HHHHHHCCCcCCCcCHHHeEECCCCCEEEEecCcccccc
Confidence            468999999999999999999999999999999987543

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=98.73  E-value=3.1e-09  Score=73.19  Aligned_cols=59  Identities=20%  Similarity=0.220  Sum_probs=42.1

Q ss_pred             CccchhCCccccCCCCCceEE----ecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFI----EKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill----~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||+|.||++    +....++|+|||+++........   ....++..|.+||.-
T Consensus       125 L~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~a~~~~~~~~~---~~~~gt~~y~aPE~~  187 (319)
T 4euu_A          125 MNHLRENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQF---VSLYGTEEYLHPDMY  187 (319)
T ss_dssp             HHHHHHTTEECSCCSGGGEEEEECTTSCEEEEECCCTTCEECCTTCCB---CCCCSCGGGCCHHHH
T ss_pred             HHHHHHCCEecCCCCHHHEEEeccCCCCceEEEccCCCceecCCCCce---eecccCCCccCHHHh
Confidence            468999999999999999998    55667899999998765433221   122345556666543

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=98.72  E-value=2.3e-09  Score=71.61  Aligned_cols=61  Identities=25%  Similarity=0.397  Sum_probs=44.2

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|++|+|.||+++.++.++|+|||++......... ......++..|.||+..
T Consensus       117 l~~lH~~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~~~-~~~~~~~~~~y~aPE~~  177 (267)
T 3t9t_A          117 MAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYT-SSTGTKFPVKWASPEVF  177 (267)
T ss_dssp             HHHHHHTTCCCSSCCGGGEEECGGGCEEECCTTGGGGBCCHHHH-STTSTTCCGGGCCHHHH
T ss_pred             HHHHHhCCcccCCCchheEEECCCCCEEEccccccccccccccc-ccccccccccccChhhh
Confidence            46899999999999999999998899999999998765422211 12222334556666654

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=98.72  E-value=3.6e-09  Score=73.27  Aligned_cols=62  Identities=26%  Similarity=0.327  Sum_probs=41.1

Q ss_pred             CccchhCCccccCCCCCceEEecCC--cEEEeeccccccccccCCC--CCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNN--KVVITDFGLFNFSKLYNSY--TSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~--~~kl~dfgla~~~~~~~~~--~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+.+++|+||+|.||+++.+.  .++|+|||++.........  .......++..|++||.-
T Consensus       181 l~~LH~~~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  246 (345)
T 3hko_A          181 LHYLHNQGICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVL  246 (345)
T ss_dssp             HHHHHHTTEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHH
T ss_pred             HHHHHHCCccccCCChhhEEEecCCCceEEEeeccccccccccCccccccccccCCCccccCchhh
Confidence            4689999999999999999997655  7999999998754332211  112222344555666543

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=98.72  E-value=1.5e-09  Score=73.44  Aligned_cols=61  Identities=25%  Similarity=0.396  Sum_probs=44.3

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+.+++|++|+|.||+++.++.++|+|||++......... ......++..|.+|+.-
T Consensus       124 l~~lH~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~-~~~~~~~~~~y~aPE~~  184 (288)
T 3kfa_A          124 MEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYT-AHAGAKFPIKWTAPESL  184 (288)
T ss_dssp             HHHHHHHTCCCSCCSGGGEEECGGGCEEECCCCGGGTSCSSSSE-EETTEEECGGGCCHHHH
T ss_pred             HHHHHHCCccCCCCCcceEEEcCCCCEEEccCccceeccCCccc-cccCCccccCcCChhhh
Confidence            46899999999999999999998899999999998765433222 22222334556666654

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=98.72  E-value=5.2e-09  Score=75.92  Aligned_cols=62  Identities=29%  Similarity=0.345  Sum_probs=38.8

Q ss_pred             CccchhCCccccCCCCCceEEec-----CCcEEEeeccccccccccCCC-CCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEK-----NNKVVITDFGLFNFSKLYNSY-TSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~-----~~~~kl~dfgla~~~~~~~~~-~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||+|.||+++.     ...++|+|||+++........ .......++.+|++||.-
T Consensus       131 L~~LH~~~ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~gt~~y~APE~l  198 (432)
T 3p23_A          131 LAHLHSLNIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVGRHSFSRRSGVPGTEGWIAPEML  198 (432)
T ss_dssp             HHHHHHTTCCCCCCSTTSEEECCCBTTTBCCEEECCTTEEECC------------CCSCTTSCCGGGT
T ss_pred             HHHHHHCcCEeCCCCHHHEEEecCCCCCceeEEEecccceeeccCCCcceeeccccCCCcCccChhhh
Confidence            46899999999999999999953     235789999998765433211 122223345556666543

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=98.72  E-value=2.7e-09  Score=72.52  Aligned_cols=62  Identities=24%  Similarity=0.375  Sum_probs=43.5

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCC-CCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYT-SNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~-~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+.+++|++|++.||+++.++.++|+|||++.......... ......++..|.+||..
T Consensus       130 l~~LH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  192 (291)
T 1xbb_A          130 MKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECI  192 (291)
T ss_dssp             HHHHHHTTEECSCCSGGGEEEEETTEEEECCCTTCEECCTTCSEEEC----CCCGGGCCHHHH
T ss_pred             HHHHHhCCeEcCCCCcceEEEeCCCcEEEccCCcceeeccCCCcccccccCCCCceeeChHHh
Confidence            468999999999999999999999999999999987654332221 11222234556666644

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=98.72  E-value=4.3e-09  Score=74.75  Aligned_cols=59  Identities=27%  Similarity=0.274  Sum_probs=42.1

Q ss_pred             CccchhCCccccCCCCCceEEecCC----cEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNN----KVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~----~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+.+++|+||+|.||++...+    .++|+|||++........   .....++.+|.+||.-
T Consensus       128 L~~LH~~givHrDlkp~NIll~~~~~~~~~vkl~DFG~a~~~~~~~~---~~~~~gt~~y~aPE~~  190 (361)
T 2yab_A          128 VNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVE---FKNIFGTPEFVAPEIV  190 (361)
T ss_dssp             HHHHHHTTEECCCCSGGGEEESCTTSSSCCEEECCCSSCEECCTTCC---CCCCCSCGGGCCHHHH
T ss_pred             HHHHHHCCcccCCCCHHHEEEeCCCCCccCEEEEecCCceEcCCCCc---cccCCCCccEECchHH
Confidence            4689999999999999999997665    799999999876543221   1222344556666543

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=98.72  E-value=3.2e-09  Score=80.79  Aligned_cols=61  Identities=25%  Similarity=0.479  Sum_probs=42.3

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||+|.||+++.++.++|+|||+++.......... ....++..|++||.-
T Consensus       504 L~~LH~~givHrDikp~NILl~~~~~vkL~DFG~a~~~~~~~~~~~-~~~~~t~~y~aPE~~  564 (656)
T 2j0j_A          504 LAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKA-SKGKLPIKWMAPESI  564 (656)
T ss_dssp             HHHHHHTTCCCSCCSGGGEEEEETTEEEECCCCCCCSCCC-----------CCGGGCCHHHH
T ss_pred             HHHHHhCCccccccchHhEEEeCCCCEEEEecCCCeecCCCcceec-cCCCCCcceeCHHHh
Confidence            4689999999999999999999999999999999876543322222 222334566666643

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=98.72  E-value=4.6e-09  Score=72.64  Aligned_cols=62  Identities=34%  Similarity=0.497  Sum_probs=44.8

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCC-CCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSY-TSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~-~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||..+++|++|+|.||+++.++.++|+|||++......... .......++..|.+||.-
T Consensus       158 L~~LH~~~ivH~dikp~NIli~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  220 (326)
T 2w1i_A          158 MEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEYYKVKEPGESPIFWYAPESL  220 (326)
T ss_dssp             HHHHHHTTEECSCCCGGGEEEEETTEEEECCCTTCEECCSSCSEEECSSCCSCCGGGCCHHHH
T ss_pred             HHHHHhCCEeccCCCcceEEEcCCCcEEEecCcchhhccccccccccccCCCCceeEECchhh
Confidence            46899999999999999999999999999999998765433222 112223344556666543

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=98.71  E-value=4.9e-09  Score=71.84  Aligned_cols=57  Identities=25%  Similarity=0.373  Sum_probs=41.6

Q ss_pred             CccchhCCccccCCCCCceEEec-------------------CCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEK-------------------NNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~-------------------~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||+++++|+||+|.||+++.                   ...++|+|||++.......     ....++.+|.+||.
T Consensus       131 l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~-----~~~~gt~~y~aPE~  205 (339)
T 1z57_A          131 VNFLHSNKLTHTDLKPENILFVQSDYTEAYNPKIKRDERTLINPDIKVVDFGSATYDDEHH-----STLVSTRHYRAPEV  205 (339)
T ss_dssp             HHHHHHTTEECCCCCGGGEEESCCCEEEEEC----CEEEEESCCCEEECCCSSCEETTSCC-----CSSCSCGGGCCHHH
T ss_pred             HHHHHHCCCcCCCCCHHHEEEeccccccccCCccccccccccCCCceEeeCcccccCcccc-----ccccCCccccChHH
Confidence            46899999999999999999976                   5579999999986543221     12234556666665


Q ss_pred             h
Q psy700           62 E   62 (93)
Q Consensus        62 ~   62 (93)
                      -
T Consensus       206 ~  206 (339)
T 1z57_A          206 I  206 (339)
T ss_dssp             H
T ss_pred             h
Confidence            4

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=98.71  E-value=2.9e-09  Score=74.12  Aligned_cols=60  Identities=27%  Similarity=0.449  Sum_probs=33.1

Q ss_pred             CccchhCCccccCCCCCceEEecCC---cEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNN---KVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~---~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||+|.||++....   .++|+|||++........  ......++.+|.+||.-
T Consensus       119 l~~LH~~~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~~--~~~~~~~t~~y~aPE~~  181 (325)
T 3kn6_A          119 VSHMHDVGVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDNQ--PLKTPCFTLHYAAPELL  181 (325)
T ss_dssp             HHHHHHTTEECCCCCGGGEEEEC----CEEEECCCTTCEECCC----------------------
T ss_pred             HHHHHHCCCeecCCCHHHEEEecCCCcccEEEeccccceecCCCCC--cccccCCCcCccCHHHh
Confidence            4689999999999999999997654   799999999875442221  11222335566666643

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=98.71  E-value=5.5e-09  Score=72.38  Aligned_cols=60  Identities=22%  Similarity=0.359  Sum_probs=39.5

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||..+++|++|++.||+++.++.++|+|||++.........  .....++.+|.+||.-
T Consensus       137 l~~LH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~--~~~~~~t~~y~aPE~~  196 (331)
T 4aaa_A          137 IGFCHSHNIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGEV--YDDEVATRWYRAPELL  196 (331)
T ss_dssp             HHHHHHTTCCCCCCCGGGEEECTTSCEEECCCTTC--------------CCCCCTTCCHHHH
T ss_pred             HHHHHHCCEEccCcChheEEEcCCCcEEEEeCCCceeecCCccc--cCCCcCCccccCcccc
Confidence            46899999999999999999999999999999998654422211  1122334556666543

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=98.71  E-value=3.3e-09  Score=73.26  Aligned_cols=62  Identities=29%  Similarity=0.315  Sum_probs=43.9

Q ss_pred             Cccch--------hCCccccCCCCCceEEecCCcEEEeeccccccccccCCCC--CCCCCCCCCCCChhhhh
Q psy700            1 MGYLH--------ARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYT--SNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lh--------s~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~--~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||        ..+++|+||+|.||+++.++.++|+|||++..........  ......++..|.+||.-
T Consensus       152 l~~lH~~~~~~~~~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  223 (342)
T 1b6c_B          152 LAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVL  223 (342)
T ss_dssp             HHHHHCCBCSTTCBCEEECSCCSGGGEEECTTSCEEECCCTTCEEEETTTTEEEECCCSCCCCGGGCCHHHH
T ss_pred             HHHHHHHHhhhcccCCeeeCCCCHHHEEECCCCCEEEEECCCceeccccccccccccccCCcCcccCCHhhh
Confidence            35788        8899999999999999999999999999987654332211  12222345556666643

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=98.71  E-value=4.2e-09  Score=73.55  Aligned_cols=39  Identities=33%  Similarity=0.734  Sum_probs=34.4

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||+++++|++|+|.||+++.++.++|+|||++....
T Consensus       139 l~~LH~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~  177 (353)
T 3coi_A          139 LKYIHSAGVVHRDLKPGNLAVNEDCELKILDFGLARHAD  177 (353)
T ss_dssp             HHHHHHTTCCCSSCCGGGEEECTTCCEEECSTTCTTC--
T ss_pred             HHHHHHCCcccCCCCHHHEeECCCCcEEEeecccccCCC
Confidence            468999999999999999999999999999999986543

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=98.71  E-value=3.2e-09  Score=74.20  Aligned_cols=58  Identities=26%  Similarity=0.354  Sum_probs=37.0

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||+++++|++|+|.||+++.++.++|+|||++........   .....++.+|.+|+.
T Consensus       147 l~~lH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~---~~~~~~t~~y~aPE~  204 (362)
T 3pg1_A          147 LHVLHEAGVVHRDLHPGNILLADNNDITICDFNLAREDTADAN---KTHYVTHRWYRAPEL  204 (362)
T ss_dssp             HHHHHHTTCCCCCCCGGGEEECTTCCEEECCTTC------------------CGGGCCHHH
T ss_pred             HHHHHHCcCEecCCChHHEEEcCCCCEEEEecCcccccccccc---cceecccceecCcHH
Confidence            4689999999999999999999999999999999864332221   112233444555554

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=98.71  E-value=2.7e-09  Score=72.08  Aligned_cols=39  Identities=28%  Similarity=0.640  Sum_probs=30.1

Q ss_pred             CccchhC-CccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHAR-GILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~-~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||++ +++|+||+|.||+++..+.++|+|||++....
T Consensus       122 l~~lH~~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~  161 (290)
T 3fme_A          122 LEHLHSKLSVIHRDVKPSNVLINALGQVKMCDFGISGYLV  161 (290)
T ss_dssp             HHHHHHHSCCCCCCCSGGGCEECTTCCEEBCCC-------
T ss_pred             HHHHhhcCCeecCCCCHHHEEECCCCCEEEeecCCccccc
Confidence            4689998 99999999999999999999999999986554

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=98.71  E-value=4.8e-09  Score=70.85  Aligned_cols=39  Identities=46%  Similarity=0.871  Sum_probs=35.2

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||+++++|++|++.||+++.++.++|+|||++....
T Consensus       129 l~~LH~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~  167 (303)
T 1zy4_A          129 LSYIHSQGIIHRDLKPMNIFIDESRNVKIGDFGLAKNVH  167 (303)
T ss_dssp             HHHHHHTTCCCSCCCGGGEEECTTSCEEECCCCCCSCTT
T ss_pred             HHHHHhCCeecccCCHHhEEEcCCCCEEEeeCcchhhcc
Confidence            468999999999999999999999999999999986543

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=98.71  E-value=3.9e-09  Score=72.92  Aligned_cols=59  Identities=29%  Similarity=0.433  Sum_probs=41.8

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|++|+|.||+++.++.++|+|||+++......   .......+..|.+||..
T Consensus       155 L~~LH~~~ivH~dlkp~NIl~~~~~~~kL~Dfg~~~~~~~~~---~~~~~~~~~~y~aPE~~  213 (327)
T 1fvr_A          155 MDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYV---KKTMGRLPVRWMAIESL  213 (327)
T ss_dssp             HHHHHHTTEECSCCSGGGEEECGGGCEEECCTTCEESSCEEC---CC----CCTTTCCHHHH
T ss_pred             HHHHHhCCccCCCCccceEEEcCCCeEEEcccCcCccccccc---cccCCCCCccccChhhh
Confidence            468999999999999999999998999999999986433221   11222334556666644

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=98.70  E-value=7.5e-09  Score=69.67  Aligned_cols=58  Identities=21%  Similarity=0.248  Sum_probs=42.0

Q ss_pred             CccchhCCccccCCCCCceEE---ecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFI---EKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill---~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||+++++|++|+|.||++   +....++|+|||++........   .....++.+|.|||.
T Consensus       119 l~~lH~~~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~~~~~~---~~~~~~t~~y~aPE~  179 (277)
T 3f3z_A          119 VAYCHKLNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKPGKM---MRTKVGTPYYVSPQV  179 (277)
T ss_dssp             HHHHHHTTEECCCCSGGGEEESSSSTTCCEEECCCTTCEECCTTSC---BCCCCSCTTTCCHHH
T ss_pred             HHHHHHCCccCCCCCHHHEEEecCCCCCcEEEEecccceeccCccc---hhccCCCCCccChHH
Confidence            468999999999999999999   6778899999999865442221   122234455666654

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=98.70  E-value=5.3e-09  Score=73.91  Aligned_cols=59  Identities=27%  Similarity=0.415  Sum_probs=43.4

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+.+++|+|++|.||+++.++.++++|||++........   .....++.+|.+||.-
T Consensus       213 L~~LH~~gi~H~Dlkp~NIl~~~~~~ikl~DfG~~~~~~~~~~---~~~~~gt~~y~aPE~~  271 (365)
T 2y7j_A          213 VSFLHANNIVHRDLKPENILLDDNMQIRLSDFGFSCHLEPGEK---LRELCGTPGYLAPEIL  271 (365)
T ss_dssp             HHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECCTTCC---BCCCCSCGGGCCHHHH
T ss_pred             HHHHHhCCeecCCCCHHHEEECCCCCEEEEecCcccccCCCcc---cccCCCCCCccChhhc
Confidence            4689999999999999999999999999999999865543221   1222344556666543

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=98.70  E-value=4.1e-09  Score=72.50  Aligned_cols=61  Identities=21%  Similarity=0.265  Sum_probs=38.0

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+.+++|++|++.||+++.++.++|+|||++............ ...++..|.+||.-
T Consensus       147 l~~lH~~~i~H~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~-~~~~~~~y~aPE~~  207 (309)
T 2h34_A          147 LDAAHAAGATHRDVKPENILVSADDFAYLVDFGIASATTDEKLTQLG-NTVGTLYYMAPERF  207 (309)
T ss_dssp             HHHHHHTTCCCSCCCGGGEEECTTSCEEECSCCC-----------------CCGGGCCGGGT
T ss_pred             HHHHHHCcCCcCCCChHHEEEcCCCCEEEecCccCcccccccccccc-ccCCCcCccCHHHH
Confidence            46899999999999999999999999999999998655433222112 22344556666543

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=98.70  E-value=5.9e-09  Score=74.29  Aligned_cols=59  Identities=20%  Similarity=0.220  Sum_probs=42.2

Q ss_pred             CccchhCCccccCCCCCceEE----ecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFI----EKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill----~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||+|.||++    +....++|+|||+++........   ....++..|.+|+.-
T Consensus       125 L~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~a~~~~~~~~~---~~~~gt~~y~aPE~~  187 (396)
T 4eut_A          125 MNHLRENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQF---VSLYGTEEYLHPDMY  187 (396)
T ss_dssp             HHHHHHTTEECCCCCGGGEEEEECTTSCEEEEECCGGGCEECCCGGGS---SCSSSCCTTCCHHHH
T ss_pred             HHHHHHCCEEECCcCHHHEEEeecCCCceeEEEecCCCceEccCCCcc---ccccCCccccCHHHh
Confidence            468999999999999999998    55567899999998765433222   122345556666543

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=98.69  E-value=2.6e-09  Score=79.24  Aligned_cols=61  Identities=26%  Similarity=0.454  Sum_probs=44.9

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||.++++|+||++.||+++.+..++|+|||+++...... ........+++.|++||..
T Consensus       376 L~~LH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~-~~~~~~~~~~~~y~aPE~~  436 (535)
T 2h8h_A          376 MAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNE-YTARQGAKFPIKWTAPEAA  436 (535)
T ss_dssp             HHHHHHTTCCCSCCSGGGEEECGGGCEEECCTTSTTTCCCHH-HHTTCSTTSCGGGSCHHHH
T ss_pred             HHHHHhCCeeCCCCCHhhEEEcCCCcEEEcccccceecCCCc-eecccCCcCcccccCHHHh
Confidence            468999999999999999999988999999999987654222 1122233345666666643

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=98.69  E-value=4e-09  Score=76.25  Aligned_cols=62  Identities=31%  Similarity=0.418  Sum_probs=39.7

Q ss_pred             CccchhCCccccCCCCCceEEecC-------------CcEEEeeccccccccccCCCC--CCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKN-------------NKVVITDFGLFNFSKLYNSYT--SNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~-------------~~~kl~dfgla~~~~~~~~~~--~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||+|.||+++..             ..++|+|||++..........  ......++.+|++||.-
T Consensus       128 L~~LH~~~ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  204 (434)
T 2rio_A          128 VAHLHSLKIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELL  204 (434)
T ss_dssp             HHHHHHTTEECCCCSGGGEEEECCHHHHSCCTTCCCSCEEEECCCTTCEECCC--------------CCTTSCHHHH
T ss_pred             HHHHHHCCccccCCChHhEEEecCcccccccccCCCceEEEEcccccceecCCCCccceeeecCCCCCCCccCHHHh
Confidence            468999999999999999999753             378999999987654332211  11223345566666643

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=98.69  E-value=5.1e-09  Score=75.38  Aligned_cols=59  Identities=27%  Similarity=0.363  Sum_probs=38.6

Q ss_pred             CccchhCCccccCCCCCceEEecCC---cEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNN---KVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~---~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||+|.||+++...   .++|+|||+++.......   .....++.+|+|||.-
T Consensus       252 l~~LH~~~ivHrDlkp~NIll~~~~~~~~~kl~DFG~a~~~~~~~~---~~~~~gt~~y~aPE~~  313 (419)
T 3i6u_A          252 VQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSL---MRTLCGTPTYLAPEVL  313 (419)
T ss_dssp             HHHHHHTTCCCSCCCGGGEEESSSSSSCCEEECCSSTTTSCC--------------CTTCCTTTT
T ss_pred             HHHHHHCCccccCCChHhEEEecCCCcceEEEeecccceecCCCcc---ccccCCCCCccCceee
Confidence            4689999999999999999996543   599999999876543221   1223345566666643

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=98.69  E-value=4.3e-09  Score=71.36  Aligned_cols=62  Identities=26%  Similarity=0.363  Sum_probs=41.2

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCC---CCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSY---TSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~---~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||.++++|++|++.||+++.++.++|+|||++.........   .......++..|.+||..
T Consensus       134 l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  198 (303)
T 2vwi_A          134 LEYLHKNGQIHRDVKAGNILLGEDGSVQIADFGVSAFLATGGDITRNKVRKTFVGTPCWMAPEVM  198 (303)
T ss_dssp             HHHHHHTTCCCCCCSGGGEEECTTCCEEECCCHHHHHCC---------------CCCTTCCHHHH
T ss_pred             HHHHHhCCCCCCCCChhhEEEcCCCCEEEEeccchheeccCCCccchhhhcccCCCccccCHHHh
Confidence            46899999999999999999999999999999998654432211   111222345556666543

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=98.69  E-value=6.2e-09  Score=72.04  Aligned_cols=58  Identities=24%  Similarity=0.268  Sum_probs=42.5

Q ss_pred             CccchhCCccccCCCCCceEEe-cCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIE-KNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~-~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+.+++|+||++.||+++ ..+.++|+|||++.......    .....++.+|.+||..
T Consensus       162 L~~LH~~~ivH~Dlkp~NIll~~~~~~~kL~Dfg~~~~~~~~~----~~~~~gt~~y~aPE~~  220 (320)
T 3a99_A          162 VRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTV----YTDFDGTRVYSPPEWI  220 (320)
T ss_dssp             HHHHHHTTEECCCCSGGGEEEETTTTEEEECCCTTCEECCSSC----BCCCCSCGGGSCHHHH
T ss_pred             HHHHHHCCcEeCCCCHHHEEEeCCCCCEEEeeCcccccccccc----ccCCCCCccCCChHHh
Confidence            4689999999999999999998 67889999999987654221    1122344556666543

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=98.69  E-value=4e-09  Score=73.45  Aligned_cols=62  Identities=26%  Similarity=0.346  Sum_probs=38.4

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCC-CCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYT-SNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~-~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||..+++|+||++.||+++.++.++|+|||++.......... .......+..|.+||.-
T Consensus       160 L~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  222 (333)
T 1mqb_A          160 MKYLANMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAI  222 (333)
T ss_dssp             HHHHHHTTCCCSCCCGGGEEECTTCCEEECCCCC-----------------CCCGGGSCHHHH
T ss_pred             HHHHHhCCeeCCCCChheEEECCCCcEEECCCCcchhhccccccccccCCCCccccccCchhc
Confidence            468999999999999999999999999999999987654322211 11112234456666643

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...

Probab=98.69  E-value=7.4e-09  Score=70.27  Aligned_cols=60  Identities=23%  Similarity=0.341  Sum_probs=43.3

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|++|++.||+++.++.++|+|||++.........  .....++.+|.+||.-
T Consensus       116 l~~lH~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~~--~~~~~~~~~y~aPE~~  175 (299)
T 2r3i_A          116 LAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRT--YTHEVVTLWYRAPEIL  175 (299)
T ss_dssp             HHHHHHTTCCCCCCCGGGEEECTTSCEEECSTTHHHHHCCCSBC--TTSCBCCCTTCCHHHH
T ss_pred             HHHHHHCCccCCCCCHHHeEEcCCCCEEECcchhhhhccCCccc--cCcccccccccCcHHh
Confidence            46899999999999999999999999999999998654322211  1122334556666543

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=98.69  E-value=4.2e-09  Score=76.09  Aligned_cols=57  Identities=23%  Similarity=0.290  Sum_probs=41.4

Q ss_pred             CccchhCCccccCCCCCceEEecCCc--EEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNK--VVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~--~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+.+++|+||+|.||+++..+.  ++|+|||++.......    . ...++.+|++||.-
T Consensus       213 L~~LH~~~ivHrDlKp~NILl~~~~~~~vkL~DFG~a~~~~~~~----~-~~~gt~~y~aPE~~  271 (429)
T 3kvw_A          213 LDALHKNRIIHCDLKPENILLKQQGRSGIKVIDFGSSCYEHQRV----Y-TYIQSRFYRAPEVI  271 (429)
T ss_dssp             HHHHHHHTEECSCCSGGGEEESSTTSCCEEECCCTTCEETTCCC----C-SSCSCGGGCCHHHH
T ss_pred             HHHHHHCCeecCCCCHHHeEEccCCCcceEEeecccceecCCcc----c-ccCCCCCccChHHH
Confidence            46899999999999999999998776  9999999986543221    1 12334456666543

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=98.69  E-value=7.4e-09  Score=73.60  Aligned_cols=58  Identities=28%  Similarity=0.244  Sum_probs=41.1

Q ss_pred             CccchhCCccccCCCCCceEEe--cCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIE--KNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~--~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||+.+++|+||+|.||++.  ....++|+|||+++........  .. ..++.+|.+||.
T Consensus       200 L~~LH~~~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~~~~--~~-~~gt~~y~aPE~  259 (373)
T 2x4f_A          200 IRHMHQMYILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPREKL--KV-NFGTPEFLAPEV  259 (373)
T ss_dssp             HHHHHHTTEECCCCCGGGEEEEETTTTEEEECCCSSCEECCTTCBC--CC-CCSSCTTCCHHH
T ss_pred             HHHHHHCCcccccCCHHHEEEecCCCCcEEEEeCCCceecCCcccc--cc-ccCCCcEeChhh
Confidence            4689999999999999999984  4567999999998765432221  12 223455555554

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=98.69  E-value=7e-09  Score=73.39  Aligned_cols=37  Identities=24%  Similarity=0.472  Sum_probs=34.0

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNF   37 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~   37 (93)
                      |.|||+++++|+||+|.||+++.++.++|+|||++..
T Consensus       141 l~~LH~~~ivHrDlkp~NIll~~~~~~kl~dfg~~~~  177 (389)
T 3gni_B          141 LDYIHHMGYVHRSVKASHILISVDGKVYLSGLRSNLS  177 (389)
T ss_dssp             HHHHHHTTEECCCCSGGGEEECTTCCEEECCGGGCEE
T ss_pred             HHHHHhCCeecCCCCHHHEEEcCCCCEEEccccccee
Confidence            4689999999999999999999999999999998754

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=98.68  E-value=8.8e-09  Score=70.16  Aligned_cols=39  Identities=38%  Similarity=0.748  Sum_probs=33.6

Q ss_pred             CccchhCCccccCCCCCceEEe-cCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIE-KNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~-~~~~~kl~dfgla~~~~   39 (93)
                      |.|||+++++|++|+|.||+++ .+..++|+|||+++...
T Consensus       133 l~~lH~~~i~H~dlkp~Nil~~~~~~~~kl~Dfg~~~~~~  172 (320)
T 2i6l_A          133 LKYIHSANVLHRDLKPANLFINTEDLVLKIGDFGLARIMD  172 (320)
T ss_dssp             HHHHHHTTCBCCCCSGGGEEEETTTTEEEECCCTTCBCC-
T ss_pred             HHHHHhCCEecCCCCHHHEEEcCCCCeEEEccCccccccC
Confidence            4689999999999999999997 45689999999987653

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=98.68  E-value=1.3e-08  Score=70.86  Aligned_cols=60  Identities=27%  Similarity=0.356  Sum_probs=44.0

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||++.||+++.++.++|+|||++........  ......++.+|.+||.-
T Consensus       154 L~~LH~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~  213 (335)
T 2owb_A          154 CQYLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGE--RKKVLCGTPNYIAPEVL  213 (335)
T ss_dssp             HHHHHHTTEECSCCCGGGEEECTTCCEEECCCTTCEECCSTTC--CBCCCCSCCSSCCHHHH
T ss_pred             HHHHHHCCCEecCCCchhEEEcCCCCEEEeeccCceecccCcc--cccccCCCccccCHHHh
Confidence            4689999999999999999999999999999999875432221  12223345556666654

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=98.68  E-value=5.3e-09  Score=73.30  Aligned_cols=25  Identities=40%  Similarity=0.853  Sum_probs=22.0

Q ss_pred             CccchhC-CccccCCCCCceEEecCC
Q psy700            1 MGYLHAR-GILHKDLKSKNIFIEKNN   25 (93)
Q Consensus         1 l~~lhs~-~iihrdlk~~nill~~~~   25 (93)
                      |.|||++ +++|+||+|.||+++..+
T Consensus       159 L~~lH~~~givHrDikp~NIll~~~~  184 (397)
T 1wak_A          159 LDYLHTKCRIIHTDIKPENILLSVNE  184 (397)
T ss_dssp             HHHHHHTTCEECCCCSGGGEEECCCH
T ss_pred             HHHHHHhCCEecCCCCHHHeeEeccc
Confidence            4689998 999999999999998654

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=98.67  E-value=9e-09  Score=75.31  Aligned_cols=58  Identities=29%  Similarity=0.395  Sum_probs=41.2

Q ss_pred             CccchhCCccccCCCCCceEEecC---CcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKN---NKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~---~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||+++++|++|+|.||+++..   ..++|+|||++........  ... ..++.+|.|||.
T Consensus       149 l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~~~~~~~--~~~-~~gt~~y~aPE~  209 (494)
T 3lij_A          149 VTYLHKHNIVHRDLKPENLLLESKEKDALIKIVDFGLSAVFENQKK--MKE-RLGTAYYIAPEV  209 (494)
T ss_dssp             HHHHHHTTEECSCCSGGGEEESCSSTTCCEEECCCTTCEECBTTBC--BCC-CCSCTTTCCHHH
T ss_pred             HHHHHHCCceeccCChhhEEEeCCCCCCcEEEEECCCCeECCCCcc--ccc-cCCCcCeeCHHH
Confidence            468999999999999999999753   4599999999876543221  122 234555666654

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=98.67  E-value=9.7e-09  Score=69.44  Aligned_cols=38  Identities=37%  Similarity=0.739  Sum_probs=32.9

Q ss_pred             CccchhCC--ccccCCCCCceEEecCCc-----EEEeeccccccc
Q psy700            1 MGYLHARG--ILHKDLKSKNIFIEKNNK-----VVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~--iihrdlk~~nill~~~~~-----~kl~dfgla~~~   38 (93)
                      |.|||+++  ++|+||+|.||+++....     ++|+|||+++..
T Consensus       135 l~~lH~~~~~ivH~dikp~Nil~~~~~~~~~~~~kl~Dfg~~~~~  179 (287)
T 4f0f_A          135 IEYMQNQNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGLSQQS  179 (287)
T ss_dssp             HHHHHTSSSCCBCSCCSGGGEEESCCCTTCSCCEEECCCTTCBCC
T ss_pred             HHHHHhCCCCeecCCCCcceEEEeccCCCCceeEEeCCCCccccc
Confidence            46899999  999999999999976665     899999998643

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=98.67  E-value=6.8e-09  Score=70.02  Aligned_cols=57  Identities=25%  Similarity=0.445  Sum_probs=38.1

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|++|+|.||+++.++.++|+|||++........     ....+..|.||+.-
T Consensus       130 l~~lH~~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~~-----~~~~~~~y~aPE~~  186 (278)
T 1byg_A          130 MEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQD-----TGKLPVKWTAPEAL  186 (278)
T ss_dssp             HHHHHHTTCCCSCCSGGGEEECTTSCEEECCCCC-----------------CCTTTSCHHHH
T ss_pred             HHHHHhCCccccCCCcceEEEeCCCcEEEeecccccccccccc-----CCCccccccCHHHh
Confidence            4689999999999999999999999999999999865432211     12234556666654

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.67  E-value=7.4e-09  Score=78.59  Aligned_cols=55  Identities=24%  Similarity=0.388  Sum_probs=41.1

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++|+|+||+|.||+++.+ .++|+|||++......      ....++.+|++||.-
T Consensus       195 L~~lH~~giiHrDlkp~NIll~~~-~~kl~DFG~a~~~~~~------~~~~gt~~y~aPE~~  249 (681)
T 2pzi_A          195 LSYLHSIGLVYNDLKPENIMLTEE-QLKLIDLGAVSRINSF------GYLYGTPGFQAPEIV  249 (681)
T ss_dssp             HHHHHHTTEECCCCSGGGEEECSS-CEEECCCTTCEETTCC------SCCCCCTTTSCTTHH
T ss_pred             HHHHHHCCCeecccChHHeEEeCC-cEEEEecccchhcccC------CccCCCccccCHHHH
Confidence            468999999999999999999865 7999999998754322      222344556666543

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=98.67  E-value=1.4e-08  Score=68.91  Aligned_cols=60  Identities=27%  Similarity=0.356  Sum_probs=43.9

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||.++++|++|++.||+++.++.++|+|||++........  ......++.+|.+||..
T Consensus       128 l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~  187 (294)
T 2rku_A          128 CQYLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGE--RKKVLCGTPNYIAPEVL  187 (294)
T ss_dssp             HHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECCSTTC--CBCCCCSCCSSCCHHHH
T ss_pred             HHHHHHCCccccCCChHhEEEcCCCCEEEEeccCceecccCcc--ccccccCCCCcCCcchh
Confidence            4689999999999999999999999999999999875432221  12223345556666654

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=98.66  E-value=3.3e-09  Score=73.85  Aligned_cols=39  Identities=28%  Similarity=0.521  Sum_probs=34.6

Q ss_pred             CccchhCCccccCCCCCceEEec--CCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEK--NNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~--~~~~kl~dfgla~~~~   39 (93)
                      |.|||+.+++|+||+|.||+++.  .+.++|+|||++....
T Consensus       115 l~~lH~~givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~  155 (321)
T 1tki_A          115 LQFLHSHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLK  155 (321)
T ss_dssp             HHHHHHTTEECCCCCGGGEEESSSSCCCEEECCCTTCEECC
T ss_pred             HHHHHHCCCCcCCCCHHHEEEccCCCCCEEEEECCCCeECC
Confidence            46899999999999999999986  6789999999987654

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=98.66  E-value=5.7e-09  Score=71.48  Aligned_cols=39  Identities=46%  Similarity=0.703  Sum_probs=32.2

Q ss_pred             CccchhCCccccCCCCCceEEecCCc---EEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNK---VVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~---~kl~dfgla~~~~   39 (93)
                      |.|||+++++|+||+|.||+++....   ++|+|||++....
T Consensus       124 l~~lH~~~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~~~  165 (316)
T 2ac3_A          124 LDFLHNKGIAHRDLKPENILCEHPNQVSPVKICDFDLGSGIK  165 (316)
T ss_dssp             HHHHHHTTCCCCCCCGGGEEESCSSSSCSEEECCTTCCC---
T ss_pred             HHHHHhCCceeCCCCHHHEEEccCCCcCceEEEEccCccccc
Confidence            46899999999999999999986654   8999999986543

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=98.66  E-value=6e-09  Score=71.65  Aligned_cols=60  Identities=20%  Similarity=0.259  Sum_probs=39.7

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||..+++|++|++.||+++.++.++|+|||++........  ......++.+|.|||..
T Consensus       142 l~~lH~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~  201 (326)
T 2x7f_A          142 LSHLHQHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVG--RRNTFIGTPYWMAPEVI  201 (326)
T ss_dssp             HHHHHHTTCCCCCCSGGGEEECTTCCEEECCCTTTC---------------CCGGGCCHHHH
T ss_pred             HHHHHHCCccccCCcHHHEEEcCCCCEEEeeCcCceecCcCcc--ccccccCCccccChhhh
Confidence            4689999999999999999999999999999999865432211  11222344556666554

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=98.65  E-value=1.1e-08  Score=69.21  Aligned_cols=58  Identities=22%  Similarity=0.372  Sum_probs=42.7

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|++|++.||+++.++.++|+|||++.......    .....++..|.+||..
T Consensus       127 l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~----~~~~~~~~~y~aPE~~  184 (284)
T 2vgo_A          127 LHYCHERKVIHRDIKPENLLMGYKGELKIADFGWSVHAPSLR----RRTMCGTLDYLPPEMI  184 (284)
T ss_dssp             HHHHHTTTEECCCCSGGGEEECTTCCEEECCCTTCEECSSSC----BCCCCSCGGGCCHHHH
T ss_pred             HHHHHHCCceecCCCHHHEEEcCCCCEEEecccccccCcccc----cccccCCCCcCCHHHh
Confidence            468999999999999999999999999999999985543211    1222345556666543

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=98.65  E-value=6.8e-09  Score=72.07  Aligned_cols=60  Identities=25%  Similarity=0.287  Sum_probs=38.1

Q ss_pred             CccchhCCccccCCCCCceEEe-----cCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIE-----KNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~-----~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||++.||++.     ....++|+|||++.........  .....++.+|.+||.-
T Consensus       145 l~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~a~~~~~~~~~--~~~~~~t~~y~aPE~~  209 (329)
T 3gbz_A          145 VNFCHSRRCLHRDLKPQNLLLSVSDASETPVLKIGDFGLARAFGIPIRQ--FTHEIITLWYRPPEIL  209 (329)
T ss_dssp             HHHHHHTTCCCSCCCGGGEEEEC-----CCEEEECCTTHHHHHC-------------CCTTCCHHHH
T ss_pred             HHHHHhCCEECCCCCHHHEEEecCCCCccceEEECcCCCccccCCcccc--cCCCcCCccccCHHHh
Confidence            4689999999999999999995     3445999999998765422211  1112234556666543

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=98.65  E-value=8e-09  Score=75.37  Aligned_cols=58  Identities=29%  Similarity=0.456  Sum_probs=39.8

Q ss_pred             CccchhCCccccCCCCCceEEe---cCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIE---KNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~---~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||+++++|++|+|.||++.   ....++|+|||++........  .... .++.+|++|+.
T Consensus       134 l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~~--~~~~-~gt~~y~aPE~  194 (486)
T 3mwu_A          134 ITYMHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTK--MKDR-IGTAYYIAPEV  194 (486)
T ss_dssp             HHHHHHTTCCCSCCSGGGEEESSSSTTCCEEECSCSCTTTBCCC------CC-TTGGGGCCGGG
T ss_pred             HHHHHHCCeEeccCchHHEEEecCCCCCCEEEEECCcCeECCCCCc--cCCC-cCCCCCCCHHH
Confidence            4689999999999999999995   345799999999875432221  1222 23445555554

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=98.64  E-value=8.7e-09  Score=69.03  Aligned_cols=39  Identities=31%  Similarity=0.564  Sum_probs=32.7

Q ss_pred             CccchhCCccccCCCCCceEEec-------------------CCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEK-------------------NNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~-------------------~~~~kl~dfgla~~~~   39 (93)
                      |.|||+++++|+||+|.||+++.                   ...++++|||++....
T Consensus       128 l~~lH~~~ivH~Dikp~NIl~~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~  185 (289)
T 1x8b_A          128 LRYIHSMSLVHMDIKPSNIFISRTSIPNAASEEGDEDDWASNKVMFKIGDLGHVTRIS  185 (289)
T ss_dssp             HHHHHHTTEECSCCSGGGEEEC--------------------CCCEEECCCTTCEETT
T ss_pred             HHHHHhCCEeecCCCHHHEEEcCCCCCcccccccccccccCCceEEEEcccccccccC
Confidence            46899999999999999999973                   3468999999986554

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=98.64  E-value=1.1e-08  Score=69.92  Aligned_cols=60  Identities=20%  Similarity=0.224  Sum_probs=43.6

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||..+++|++|+|.||+++.++.++|+|||++........  ......++.+|.||+.-
T Consensus       138 l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~  197 (314)
T 3com_A          138 LEYLHFMRKIHRDIKAGNILLNTEGHAKLADFGVAGQLTDTMA--KRNTVIGTPFWMAPEVI  197 (314)
T ss_dssp             HHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECBTTBS--CBCCCCSCGGGCCHHHH
T ss_pred             HHHHHhCCCcCCCcCHHHEEECCCCCEEEeecccchhhhhhcc--ccCccCCCCCccChhhc
Confidence            4689999999999999999999999999999999865442221  12222344556666543

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=98.64  E-value=1.2e-08  Score=69.82  Aligned_cols=58  Identities=22%  Similarity=0.274  Sum_probs=42.8

Q ss_pred             CccchhCCccccCCCCCceEEe-cCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIE-KNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~-~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+.+++|++|++.||+++ .++.++|+|||++.......    .....++.+|.+||..
T Consensus       152 l~~lH~~~i~H~dlkp~Nil~~~~~~~~kl~dfg~~~~~~~~~----~~~~~~~~~y~aPE~~  210 (312)
T 2iwi_A          152 IQHCHSRGVVHRDIKDENILIDLRRGCAKLIDFGSGALLHDEP----YTDFDGTRVYSPPEWI  210 (312)
T ss_dssp             HHHHHHHTEECCCCSGGGEEEETTTTEEEECCCSSCEECCSSC----BCCCCSCTTTSCHHHH
T ss_pred             HHHHHHCCeeecCCChhhEEEeCCCCeEEEEEcchhhhcccCc----ccccCCcccccCceee
Confidence            4689999999999999999998 78889999999987654322    1222345556666543

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=98.64  E-value=6.5e-09  Score=72.10  Aligned_cols=59  Identities=25%  Similarity=0.269  Sum_probs=40.4

Q ss_pred             CccchhCCccccCCCCCceEEec---CCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEK---NNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~---~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||.++++|++|+|.||+++.   .+.++|+|||++.........   ....++.+|++||.-
T Consensus       144 L~~LH~~givH~Dikp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~~~~---~~~~gt~~y~aPE~~  205 (327)
T 3lm5_A          144 VYYLHQNNIVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKIGHACEL---REIMGTPEYLAPEIL  205 (327)
T ss_dssp             HHHHHHTTEECSCCCGGGEEESCBTTBCCEEECCGGGCEEC------------CCCGGGCCHHHH
T ss_pred             HHHHHHCCeecCcCChHHEEEecCCCCCcEEEeeCccccccCCcccc---ccccCCcCccCCeee
Confidence            46899999999999999999986   678999999998765432221   122345556666543

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=98.64  E-value=6.7e-09  Score=69.93  Aligned_cols=60  Identities=32%  Similarity=0.435  Sum_probs=35.2

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||..+++|++|+|.||+++.++.++|+|||++.........  .....++..|.+||..
T Consensus       125 l~~lH~~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~~~--~~~~~~~~~y~aPE~~  184 (278)
T 3cok_A          125 MLYLHSHGILHRDLTLSNLLLTRNMNIKIADFGLATQLKMPHEK--HYTLCGTPNYISPEIA  184 (278)
T ss_dssp             HHHHHHTTEECSSCCGGGEEECTTCCEEECCCTTCEECC-----------------------
T ss_pred             HHHHHHCCeecCCCCHHHEEEcCCCCEEEEeecceeeccCCCCc--ceeccCCCCcCCcchh
Confidence            46899999999999999999999999999999998654422211  1112334555666543

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=98.64  E-value=1.3e-08  Score=69.05  Aligned_cols=39  Identities=44%  Similarity=0.795  Sum_probs=34.1

Q ss_pred             CccchhCC--ccccCCCCCceEEe-cCCcEEEeecccccccc
Q psy700            1 MGYLHARG--ILHKDLKSKNIFIE-KNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~--iihrdlk~~nill~-~~~~~kl~dfgla~~~~   39 (93)
                      |.|||+.+  ++|++|+|.||+++ ..+.++|+|||++....
T Consensus       142 l~~lH~~~~~i~H~dikp~Nil~~~~~~~~kl~Dfg~~~~~~  183 (290)
T 1t4h_A          142 LQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKR  183 (290)
T ss_dssp             HHHHHTSSSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCC
T ss_pred             HHHHHcCCCCEEECCCCHHHEEEECCCCCEEEeeCCCccccc
Confidence            46899998  99999999999997 67899999999986543

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=98.63  E-value=1.2e-08  Score=70.47  Aligned_cols=59  Identities=27%  Similarity=0.274  Sum_probs=42.3

Q ss_pred             CccchhCCccccCCCCCceEEecCC----cEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNN----KVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~----~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+.+++|++|+|.||+++..+    .++|+|||++........   .....++.+|.+||.-
T Consensus       128 L~~lH~~~ivH~dikp~NIl~~~~~~~~~~~kl~Dfg~~~~~~~~~~---~~~~~gt~~y~aPE~~  190 (321)
T 2a2a_A          128 VNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVE---FKNIFGTPEFVAPEIV  190 (321)
T ss_dssp             HHHHHHTTEECCCCSGGGEEESCTTSSSCCEEECCCTTCEECCTTCC---CCCCCSCGGGCCHHHH
T ss_pred             HHHHHhCCeecCCCChHHEEEecCCCCcCCEEEccCccceecCcccc---ccccCCCCCccCcccc
Confidence            4689999999999999999998766    799999999875543221   1222344556666543

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=98.63  E-value=1.3e-08  Score=69.46  Aligned_cols=60  Identities=20%  Similarity=0.276  Sum_probs=43.6

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||..+++|++|++.||+++.++.++|+|||++........  ......++.+|.+||.-
T Consensus       132 l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~  191 (303)
T 3a7i_A          132 LDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQI--KRNTFVGTPFWMAPEVI  191 (303)
T ss_dssp             HHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECBTTBC--CBCCCCSCGGGCCHHHH
T ss_pred             HHHHHHCCCccCCCChheEEECCCCCEEEeecccceecCcccc--ccCccCCCcCccCHHHH
Confidence            4689999999999999999999999999999999865543221  11222344556666554

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=98.63  E-value=8.8e-09  Score=70.01  Aligned_cols=58  Identities=28%  Similarity=0.448  Sum_probs=38.6

Q ss_pred             CccchhCCccccCCCCCceEEe---cCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIE---KNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~---~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||+++++|+||+|.||++.   ....++|+|||++........   .....++.+|.||+.
T Consensus       137 L~~LH~~~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~~~~~~~~---~~~~~~t~~y~aPE~  197 (285)
T 3is5_A          137 LAYFHSQHVVHKDLKPENILFQDTSPHSPIKIIDFGLAELFKSDEH---STNAAGTALYMAPEV  197 (285)
T ss_dssp             HHHHHHTTCCCCCCSGGGEEESSSSTTCCEEECCCCCCCC-------------CTTGGGCCHHH
T ss_pred             HHHHHhCCEEECCCCHHHEEEecCCCCCCEEEEeeecceecCCccc---CcCcccccCcCChHH
Confidence            4689999999999999999994   456799999999865432221   122234555666664

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=98.62  E-value=1.5e-08  Score=74.22  Aligned_cols=59  Identities=31%  Similarity=0.430  Sum_probs=42.0

Q ss_pred             CccchhCCccccCCCCCceEEecCC---cEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNN---KVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~---~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|++|+|.||+++..+   .++|+|||++........  ... ..++.+|.||+.-
T Consensus       159 l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~~--~~~-~~gt~~y~aPE~~  220 (504)
T 3q5i_A          159 ICYLHKHNIVHRDIKPENILLENKNSLLNIKIVDFGLSSFFSKDYK--LRD-RLGTAYYIAPEVL  220 (504)
T ss_dssp             HHHHHHTTEECSCCSGGGEEESSTTCCSSEEECCCTTCEECCTTSC--BCC-CCSCTTTCCHHHH
T ss_pred             HHHHHHCCeEeCCCcHHHEEEecCCCCccEEEEECCCCEEcCCCCc--ccc-ccCCcCCCCHHHh
Confidence            4689999999999999999998654   689999999876543221  122 2344555666543

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=98.62  E-value=1.6e-08  Score=71.18  Aligned_cols=60  Identities=30%  Similarity=0.431  Sum_probs=41.4

Q ss_pred             CccchhCCccccCCCCCceEEecC----CcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKN----NKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~----~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||+|.||++...    ..++|+|||++.........  .....++.+|.+||.-
T Consensus       129 l~~lH~~givHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~~~~~~~~--~~~~~gt~~y~aPE~~  192 (342)
T 2qr7_A          129 VEYLHAQGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENGL--LMTPCYTANFVAPEVL  192 (342)
T ss_dssp             HHHHHHTTEECSCCCGGGEEESSSSCSGGGEEECCCTTCEECBCTTCC--BCCSSCCSSCCCHHHH
T ss_pred             HHHHHHCCcEeccCCHHHEEEecCCCCcCeEEEEECCCcccCcCCCCc--eeccCCCccccCHHHh
Confidence            468999999999999999998533    35999999998765432221  2223345556666644

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=98.62  E-value=1.2e-08  Score=68.96  Aligned_cols=60  Identities=28%  Similarity=0.383  Sum_probs=42.3

Q ss_pred             CccchhCCccccCCCCCceEEec-CCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEK-NNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~-~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||.++++|++|++.||+++. ++.++|+|||++........  ......++.+|.+|+.-
T Consensus       135 l~~lH~~~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~  195 (295)
T 2clq_A          135 LKYLHDNQIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGINP--CTETFTGTLQYMAPEII  195 (295)
T ss_dssp             HHHHHHTTEECCCCSGGGEEEETTTCCEEECCTTTCEESCC-------CCCCCCGGGCCHHHH
T ss_pred             HHHHHhCCEEccCCChhhEEEECCCCCEEEeecccccccCCCCC--cccccCCCccccChhhh
Confidence            46899999999999999999987 78899999999865432221  11223345566666654

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=98.62  E-value=1.1e-08  Score=70.98  Aligned_cols=58  Identities=26%  Similarity=0.392  Sum_probs=43.1

Q ss_pred             Cccchh-CCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHA-RGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs-~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+ .+++|++|++.||+++.++.++|+|||++......    ......++..|.|||..
T Consensus       164 l~~lH~~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~----~~~~~~~~~~y~aPE~~  222 (348)
T 2pml_X          164 FSYIHNEKNICHRDVKPSNILMDKNGRVKLSDFGESEYMVDK----KIKGSRGTYEFMPPEFF  222 (348)
T ss_dssp             HHHHHHTSCEECCCCCGGGEEECTTSCEEECCCTTCEECBTT----EECSSCSCGGGCCGGGG
T ss_pred             HHHHhccCCEeecCCChHhEEEcCCCcEEEeccccccccccc----cccCCCCCcCccCchhh
Confidence            468999 99999999999999999999999999998764322    11222344556666544

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=98.62  E-value=7.7e-09  Score=72.67  Aligned_cols=59  Identities=29%  Similarity=0.437  Sum_probs=35.9

Q ss_pred             CccchhCCccccCCCCCceEEec---CCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEK---NNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~---~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||..+++|+||++.||+++.   ++.++|+|||+++.......   .....++.+|.+||.-
T Consensus       161 L~~LH~~~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~~---~~~~~gt~~y~aPE~~  222 (349)
T 2w4o_A          161 VAYLHENGIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQVL---MKTVCGTPGYCAPEIL  222 (349)
T ss_dssp             HHHHHHTTCCCCCCCGGGEEESSSSTTCCEEECCCC-------------------CGGGSCHHHH
T ss_pred             HHHHHHCCeEecCCCcccEEEecCCCCCCEEEccCccccccCcccc---cccccCCCCccCHHHh
Confidence            46899999999999999999975   77899999999875432211   1122345556666643

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=98.62  E-value=1.3e-08  Score=68.99  Aligned_cols=59  Identities=24%  Similarity=0.280  Sum_probs=43.2

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||..+++|++|++.||+++.++.++|+|||++........   .....++..|.+||..
T Consensus       137 l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~---~~~~~~~~~y~aPE~~  195 (298)
T 1phk_A          137 ICALHKLNIVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGEK---LREVCGTPSYLAPEII  195 (298)
T ss_dssp             HHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECCTTCC---BCCCCSCGGGCCHHHH
T ss_pred             HHHHHHCCcccCCCCcceEEEcCCCcEEEecccchhhcCCCcc---cccccCCccccCHHHh
Confidence            4689999999999999999999999999999999865442221   1222334556666543

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=98.61  E-value=1.1e-08  Score=68.65  Aligned_cols=39  Identities=33%  Similarity=0.667  Sum_probs=35.2

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||+.+++|++|++.||+++.++.++|+|||++....
T Consensus       124 l~~lH~~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~  162 (276)
T 2h6d_A          124 VDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMS  162 (276)
T ss_dssp             HHHHHHHCSSCCCCCGGGEEECTTSCEEECCCCGGGCCC
T ss_pred             HHHHHHCCCccCCCChhhEEECCCCCEEEeecccccccC
Confidence            468999999999999999999999999999999986544

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=98.61  E-value=4.9e-09  Score=76.29  Aligned_cols=39  Identities=36%  Similarity=0.727  Sum_probs=33.9

Q ss_pred             CccchhCCccccCCCCCceEE---ecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFI---EKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill---~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||+++++|++|+|.||++   ...+.++|+|||++....
T Consensus       139 l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~  180 (484)
T 3nyv_A          139 ITYMHKNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFE  180 (484)
T ss_dssp             HHHHHHTTCCCSCCCGGGEEESSSSTTCCEEECCTTHHHHBC
T ss_pred             HHHHHHCCeeeCCCCHHHEEEecCCCCCcEEEEeeeeeEEcc
Confidence            468999999999999999999   456789999999987544

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=98.61  E-value=8.7e-10  Score=82.30  Aligned_cols=37  Identities=38%  Similarity=0.706  Sum_probs=33.7

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||+++++|+||+|.||+++.  .++|+|||+++...
T Consensus       444 L~~LH~~gIiHrDiKp~NILl~~--~~kL~DFGla~~~~  480 (540)
T 3en9_A          444 VGKLHKNDVIHNDLTTSNFIFDK--DLYIIDFGLGKISN  480 (540)
T ss_dssp             HHHHHHTTEECTTCCTTSEEESS--SEEECCCTTCEECC
T ss_pred             HHHHHHCcCccCCCCHHHEEECC--eEEEEECccCEECC
Confidence            46899999999999999999987  89999999997654

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=98.60  E-value=1.2e-08  Score=69.75  Aligned_cols=37  Identities=81%  Similarity=1.303  Sum_probs=30.5

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|||+++++|++|++.||+++ ++.++|+|||++...
T Consensus       143 l~~lH~~~i~H~dlkp~NIl~~-~~~~~l~Dfg~~~~~  179 (319)
T 2y4i_B          143 MGYLHAKGILHKDLKSKNVFYD-NGKVVITDFGLFSIS  179 (319)
T ss_dssp             HHHHHHTTCCCCCCCSTTEEEC---CCEECCCSCCC--
T ss_pred             HHHHHhCCccccCCChhhEEEe-CCCEEEeecCCcccc
Confidence            4689999999999999999997 568999999997654

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=98.60  E-value=8.9e-09  Score=73.82  Aligned_cols=59  Identities=25%  Similarity=0.294  Sum_probs=41.5

Q ss_pred             CccchhCCccccCCCCCceEEec--CCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEK--NNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~--~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|+||++.||+++.  ...++|+|||++..........   ...++.+|++||.-
T Consensus       162 L~~LH~~givHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~~~~~~~---~~~gt~~y~aPE~~  222 (387)
T 1kob_A          162 LKHMHEHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIVK---VTTATAEFAAPEIV  222 (387)
T ss_dssp             HHHHHHTTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTSCEE---EECSSGGGCCHHHH
T ss_pred             HHHHHhCCeeecccchHHeEEecCCCCceEEEecccceecCCCccee---eeccCCCccCchhc
Confidence            46899999999999999999974  4679999999987654322111   12334556666544

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=98.59  E-value=2e-08  Score=67.71  Aligned_cols=59  Identities=27%  Similarity=0.383  Sum_probs=41.9

Q ss_pred             CccchhCCccccCCCCCceEEecCCc---EEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNK---VVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~---~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++|++|+|.||+++....   ++|+|||++........   .....++.+|.+||.-
T Consensus       118 l~~lH~~~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~~~---~~~~~~~~~y~aPE~~  179 (284)
T 3kk8_A          118 IAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEA---WHGFAGTPGYLSPEVL  179 (284)
T ss_dssp             HHHHHHTTEECSCCCGGGEEESSSSTTCCEEECCCTTCEECCSSCB---CCCSCSCGGGCCHHHH
T ss_pred             HHHHHHCCcCcCCCCHHHEEEecCCCCCcEEEeeceeeEEcccCcc---ccCCCCCcCCcCchhh
Confidence            46899999999999999999975544   99999999865442222   1223345556666653

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=98.59  E-value=4.9e-09  Score=70.86  Aligned_cols=38  Identities=21%  Similarity=0.437  Sum_probs=33.5

Q ss_pred             CccchhCCccccCCCCCceEEecCCc--------EEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNK--------VVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~--------~kl~dfgla~~~   38 (93)
                      |.|||+++++|+||++.||+++....        ++|+|||++...
T Consensus       126 L~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~kl~Dfg~~~~~  171 (289)
T 4fvq_A          126 MHFLEENTLIHGNVCAKNILLIREEDRKTGNPPFIKLSDPGISITV  171 (289)
T ss_dssp             HHHHHHTTCCCCCCCGGGEEEEECCBGGGTBCCEEEECCCCSCTTT
T ss_pred             HHHHhhCCeECCCcCcceEEEecCCcccccccceeeeccCcccccc
Confidence            46899999999999999999987766        999999997544

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=98.58  E-value=1.8e-08  Score=68.95  Aligned_cols=60  Identities=23%  Similarity=0.335  Sum_probs=35.7

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||..+++|++|++.||+++.++.++|+|||++........  ......++.+|.+|+..
T Consensus       149 l~~LH~~~i~H~dl~p~NIl~~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~  208 (310)
T 2wqm_A          149 LEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTT--AAHSLVGTPYYMSPERI  208 (310)
T ss_dssp             HHHHHHTTCCCCCCCGGGEEECTTSCEEECCC--------------------CCSSCCHHHH
T ss_pred             HHHHhhCCeeCCCCcHHHEEEcCCCCEEEEeccceeeecCCCc--cccccCCCeeEeChHHh
Confidence            4689999999999999999999999999999999865432221  11122334556666543

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=98.57  E-value=1.1e-08  Score=71.55  Aligned_cols=58  Identities=21%  Similarity=0.306  Sum_probs=41.2

Q ss_pred             CccchhC-CccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHAR-GILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~-~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+. +++|+||++.||+++.++.++|+|||++.......    .....++.+|.+|+.-
T Consensus       144 l~~lh~~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~----~~~~~gt~~y~aPE~~  202 (360)
T 3eqc_A          144 LTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSM----ANSFVGTRSYMSPERL  202 (360)
T ss_dssp             HHHHHHHHCCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHHC--------CCCCTTCCHHHH
T ss_pred             HHHHHHhCCEEcCCccHHHEEECCCCCEEEEECCCCccccccc----ccCCCCCCCeECHHHH
Confidence            4689986 99999999999999999999999999986543221    1122334556666543

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=98.57  E-value=1.2e-08  Score=70.29  Aligned_cols=39  Identities=26%  Similarity=0.578  Sum_probs=34.1

Q ss_pred             CccchhC-CccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHAR-GILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~-~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||.. +++|++|++.||+++.++.++|+|||++....
T Consensus       138 l~~lH~~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~  177 (327)
T 3aln_A          138 LNHLKENLKIIHRDIKPSNILLDRSGNIKLCDFGISGQLV  177 (327)
T ss_dssp             HHHHHHHHSCCCSCCCGGGEEEETTTEEEECCCSSSCC--
T ss_pred             HHHHhccCCEeECCCCHHHEEEcCCCCEEEccCCCceecc
Confidence            3689998 99999999999999999999999999986543

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=98.57  E-value=2.2e-08  Score=69.07  Aligned_cols=36  Identities=28%  Similarity=0.411  Sum_probs=33.1

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNF   37 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~   37 (93)
                      |.|||+.+++|+||+|.||+++ ++.++|+|||+|+.
T Consensus       206 l~~lH~~giiHrDlkp~NILl~-~~~vkl~DFG~a~~  241 (282)
T 1zar_A          206 VAKFYHRGIVHGDLSQYNVLVS-EEGIWIIDFPQSVE  241 (282)
T ss_dssp             HHHHHHTTEECSCCSTTSEEEE-TTEEEECCCTTCEE
T ss_pred             HHHHHHCCCEeCCCCHHHEEEE-CCcEEEEECCCCeE
Confidence            4689999999999999999999 88999999999863

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=98.57  E-value=4.8e-09  Score=71.31  Aligned_cols=60  Identities=20%  Similarity=0.294  Sum_probs=41.1

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||..+++|++|+|.||+++.++.++|+|||++........  ......++..|.||+..
T Consensus       130 l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~  189 (302)
T 2j7t_A          130 LNFLHSKRIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKTLQ--KRDSFIGTPYWMAPEVV  189 (302)
T ss_dssp             HHHHHHTTCCCCCCSGGGEEECTTSCEEECCCHHHHHHHHHHH--C-----CCGGGCCHHHH
T ss_pred             HHHHhcCCcccCCCCHHHEEECCCCCEEEEECCCCcccccccc--ccccccCChhhcCCeee
Confidence            4689999999999999999999899999999998754321111  11122344556666543

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=98.56  E-value=1.3e-08  Score=70.96  Aligned_cols=57  Identities=25%  Similarity=0.375  Sum_probs=40.2

Q ss_pred             CccchhC-CccccCCCCCceEEec------CCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHAR-GILHKDLKSKNIFIEK------NNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~-~iihrdlk~~nill~~------~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||++ +++|+||+|.||+++.      ...++|+|||++.......    . ...++.+|++||.-
T Consensus       144 L~~lH~~~~ivH~Dikp~NIll~~~~~~~~~~~~kl~Dfg~a~~~~~~~----~-~~~~t~~y~aPE~~  207 (373)
T 1q8y_A          144 LDYMHRRCGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDEHY----T-NSIQTREYRSPEVL  207 (373)
T ss_dssp             HHHHHHTTCEECSCCSGGGEEEEEEETTTTEEEEEECCCTTCEETTBCC----C-SCCSCGGGCCHHHH
T ss_pred             HHHHHhcCCEEecCCChHHeEEeccCCCcCcceEEEcccccccccCCCC----C-CCCCCccccCcHHH
Confidence            4689998 9999999999999953      2368999999986543221    1 12335556666654

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=98.55  E-value=2e-08  Score=68.59  Aligned_cols=59  Identities=20%  Similarity=0.414  Sum_probs=37.9

Q ss_pred             CccchhC-CccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHAR-GILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~-~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||.+ +++|++|++.||+++.++.++|+|||++........   .....++..|.|||..
T Consensus       137 l~~lH~~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~---~~~~~~~~~y~aPE~~  196 (318)
T 2dyl_A          137 LYYLKEKHGVIHRDVKPSNILLDERGQIKLCDFGISGRLVDDKA---KDRSAGCAAYMAPERI  196 (318)
T ss_dssp             HHHHHHHHCCCCCCCCGGGEEECTTSCEEECCCTTC-----------------CCTTCCHHHH
T ss_pred             HHHHHhhCCEEeCCCCHHHEEECCCCCEEEEECCCchhccCCcc---ccccCCCccccChhhc
Confidence            4689985 999999999999999999999999999865432221   1122344555555554

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=98.54  E-value=2.8e-08  Score=68.33  Aligned_cols=38  Identities=32%  Similarity=0.618  Sum_probs=30.4

Q ss_pred             Cccchh---CCccccCCCCCceEEecCCc-EEEeeccccccc
Q psy700            1 MGYLHA---RGILHKDLKSKNIFIEKNNK-VVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs---~~iihrdlk~~nill~~~~~-~kl~dfgla~~~   38 (93)
                      |.|||.   ++++|+||++.||+++..+. ++|+|||++...
T Consensus       115 l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~~  156 (307)
T 2eva_A          115 VAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDI  156 (307)
T ss_dssp             HHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC----
T ss_pred             HHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEccccccccc
Confidence            368998   89999999999999987765 799999998644

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=98.54  E-value=1.9e-08  Score=67.36  Aligned_cols=58  Identities=36%  Similarity=0.446  Sum_probs=36.4

Q ss_pred             CccchhCC---ccccCCCCCceEEec--------CCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARG---ILHKDLKSKNIFIEK--------NNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~---iihrdlk~~nill~~--------~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++   ++|++++|.||+++.        ...++|+|||++.........    ...++.+|.||+.-
T Consensus       118 l~~lH~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~----~~~~~~~y~aPE~~  186 (271)
T 3dtc_A          118 MNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLAREWHRTTKM----SAAGAYAWMAPEVI  186 (271)
T ss_dssp             HHHHHHSSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEECCCCC-----------------CCGGGSCHHHH
T ss_pred             HHHHHhCCCCceeecCCchHHEEEecccccccccCcceEEccCCccccccccccc----CCCCccceeCHHHh
Confidence            46899998   899999999999975        567999999998654322211    22344556666644

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=98.53  E-value=2.7e-08  Score=70.40  Aligned_cols=39  Identities=31%  Similarity=0.435  Sum_probs=32.3

Q ss_pred             Cccch--hCCccccCCCCCceEEec--CCcEEEeecccccccc
Q psy700            1 MGYLH--ARGILHKDLKSKNIFIEK--NNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lh--s~~iihrdlk~~nill~~--~~~~kl~dfgla~~~~   39 (93)
                      |.|||  ..+++|+||+|.||++..  ...++|+|||+++...
T Consensus       170 l~~lH~~~~~ivHrDlkp~NIll~~~~~~~~kL~DFG~a~~~~  212 (382)
T 2vx3_A          170 LLFLATPELSIIHCDLKPENILLCNPKRSAIKIVDFGSSCQLG  212 (382)
T ss_dssp             HHHHTSTTTCEECCCCSGGGEEESSTTSCCEEECCCTTCEETT
T ss_pred             HHHhccCCCCEEcCCCCcccEEEecCCCCcEEEEeccCceecc
Confidence            35788  468999999999999953  5679999999987653

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=98.53  E-value=1.8e-08  Score=70.26  Aligned_cols=58  Identities=22%  Similarity=0.338  Sum_probs=32.8

Q ss_pred             CccchhCCccccCCCCCceEEec---CCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEK---NNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~---~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||.++++|++|++.||+++.   ...++|+|||++.......    .....++.+|.+|+.-
T Consensus       141 l~~LH~~~ivH~dlkp~NIll~~~~~~~~~kl~Dfg~~~~~~~~~----~~~~~~t~~y~aPE~~  201 (336)
T 3fhr_A          141 IQFLHSHNIAHRDVKPENLLYTSKEKDAVLKLTDFGFAKETTQNA----LQTPCYTPYYVAPEVL  201 (336)
T ss_dssp             HHHHHHTTEECSCCSGGGEEESCSSTTCCEEECCCTTCEEC------------------------
T ss_pred             HHHHHhCCeecCCCCHHHEEEEecCCCceEEEeccccceeccccc----cccCCCCcCccChhhh
Confidence            46899999999999999999975   3459999999986543221    1122334555666543

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=98.52  E-value=9.1e-09  Score=70.92  Aligned_cols=39  Identities=38%  Similarity=0.734  Sum_probs=33.4

Q ss_pred             CccchhCCccccCCCCCceEEecCC---cEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNN---KVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~---~~kl~dfgla~~~~   39 (93)
                      |.|||+++++|++|++.||+++...   .++|+|||++....
T Consensus       127 l~~lH~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~  168 (322)
T 2ycf_A          127 VQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILG  168 (322)
T ss_dssp             HHHHHHTTEECCCCSGGGEEESSSSSSCCEEECCCTTCEECC
T ss_pred             HHHHHHCCeeccCCCHHHEEEecCCCCCeEEEccCccceecc
Confidence            4689999999999999999997654   49999999986543

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=98.52  E-value=2.4e-08  Score=67.26  Aligned_cols=39  Identities=36%  Similarity=0.656  Sum_probs=33.8

Q ss_pred             CccchhCCccccCCCCCceEEecCC----cEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNN----KVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~----~~kl~dfgla~~~~   39 (93)
                      |.|||+.+++|++|+|.||++....    .++|+|||++....
T Consensus       121 l~~lH~~~i~H~dl~p~Nil~~~~~~~~~~~kl~dfg~~~~~~  163 (283)
T 3bhy_A          121 VHYLHSKRIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKIE  163 (283)
T ss_dssp             HHHHHHTTEECSCCSGGGEEESCSSSSSCCEEECCCTTCEECC
T ss_pred             HHHHHhCCccCCCCChHHEEEecCCCCCCceEEEecccceecc
Confidence            4689999999999999999998665    79999999986543

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=98.45  E-value=2.2e-08  Score=68.39  Aligned_cols=38  Identities=50%  Similarity=0.939  Sum_probs=33.4

Q ss_pred             CccchhCCccccCCCCCceEE---ecCCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFI---EKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill---~~~~~~kl~dfgla~~~   38 (93)
                      |.|||+.+++|++|++.||++   +....++|+|||++...
T Consensus       119 l~~lH~~~i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~~  159 (304)
T 2jam_A          119 VKYLHENGIVHRDLKPENLLYLTPEENSKIMITDFGLSKME  159 (304)
T ss_dssp             HHHHHHTTCCCCSCCGGGCEESSSSTTCCEEBCSCSTTCCC
T ss_pred             HHHHHHCCccccCCCHHHEEEecCCCCCCEEEccCCcceec
Confidence            468999999999999999999   56778999999998653

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=98.39  E-value=2.3e-07  Score=71.39  Aligned_cols=59  Identities=25%  Similarity=0.252  Sum_probs=42.3

Q ss_pred             CccchhCCccccCCCCCceEEecCC---cEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNN---KVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~---~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+.+++|+||+|.||+++..+   .++|+|||++........   .....++.+|.||+.-
T Consensus       134 L~yLHs~gIVHrDLKP~NILl~~~g~~~~vKL~DFG~a~~~~~~~~---~~~~~gt~~Y~APE~l  195 (676)
T 3qa8_A          134 LRYLHENRIIHRDLKPENIVLQPGPQRLIHKIIDLGYAKELDQGEL---CTEFVGTLQYLAPELL  195 (676)
T ss_dssp             HHHHHHTTBCCCCCCSTTEEEECCSSSCEEEECSCCCCCBTTSCCC---CCCCCSCCTTCSSCSS
T ss_pred             HHHHHHCCCccCCCCHHHeEeecCCCceeEEEcccccccccccccc---cccccCCcccCChHHh
Confidence            4689999999999999999998654   389999999876543221   1223445566666643

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=98.39  E-value=1.1e-07  Score=64.56  Aligned_cols=36  Identities=28%  Similarity=0.289  Sum_probs=32.0

Q ss_pred             Cccch-hCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLH-ARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lh-s~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.||| ..+++|+||+|.||+++.  .++|+|||+|...
T Consensus       183 l~~lH~~~givHrDlkp~NILl~~--~~~liDFG~a~~~  219 (258)
T 1zth_A          183 VKRLYQEAELVHADLSEYNIMYID--KVYFIDMGQAVTL  219 (258)
T ss_dssp             HHHHHHTSCEECSSCSTTSEEESS--SEEECCCTTCEET
T ss_pred             HHHHHHHCCEEeCCCCHHHEEEcC--cEEEEECcccccC
Confidence            36899 999999999999999987  8999999998643

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=98.37  E-value=1.6e-07  Score=62.52  Aligned_cols=36  Identities=22%  Similarity=0.346  Sum_probs=32.3

Q ss_pred             CccchhCC--ccccCCCCCceEEecCCcEEEeeccccc
Q psy700            1 MGYLHARG--ILHKDLKSKNIFIEKNNKVVITDFGLFN   36 (93)
Q Consensus         1 l~~lhs~~--iihrdlk~~nill~~~~~~kl~dfgla~   36 (93)
                      |.|||+++  ++|++++|.||+++.++.+++.+|+++.
T Consensus       124 l~~lH~~~~~i~H~dikp~Nil~~~~~~~~l~~~~~~~  161 (271)
T 3kmu_A          124 MAFLHTLEPLIPRHALNSRSVMIDEDMTARISMADVKF  161 (271)
T ss_dssp             HHHHTTSSSCCTTCCCSGGGEEECTTSCEEEEGGGSCC
T ss_pred             HHHHhcCCCceecCCCccceEEEcCCcceeEEecccee
Confidence            46899999  9999999999999998889999888764

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=98.34  E-value=2.9e-08  Score=66.73  Aligned_cols=39  Identities=36%  Similarity=0.681  Sum_probs=33.4

Q ss_pred             CccchhCC-----ccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARG-----ILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~-----iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||..+     ++|++|++.||+++.++.++|+|||++....
T Consensus       124 l~~lH~~~~~~~~ivH~dl~p~NIl~~~~~~~kl~dfg~~~~~~  167 (279)
T 2w5a_A          124 LKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILN  167 (279)
T ss_dssp             HHHHHHHC------CCCCCSGGGEEECSSSCEEECCCCHHHHC-
T ss_pred             HHHHhcccCCCCeeEEeccchhhEEEcCCCCEEEecCchheeec
Confidence            46899988     9999999999999999999999999986543

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=98.33  E-value=1.1e-07  Score=64.85  Aligned_cols=37  Identities=35%  Similarity=0.638  Sum_probs=33.3

Q ss_pred             CccchhCCccccCCCCCceEEec---CCcEEEeecccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEK---NNKVVITDFGLFNF   37 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~---~~~~kl~dfgla~~   37 (93)
                      |.|||+++++|++|+|.||+++.   ...++|+|||++..
T Consensus       130 l~~lH~~~i~H~dlkp~Nil~~~~~~~~~~kl~Dfg~a~~  169 (299)
T 3m2w_A          130 IQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKE  169 (299)
T ss_dssp             HHHHHHTTEECCCCSGGGEEESSSSTTCCEEECCCTTCEE
T ss_pred             HHHHHhCCcccCCCCHHHEEEecCCCCCcEEEeccccccc
Confidence            46899999999999999999987   67899999999864

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=98.33  E-value=8.3e-08  Score=65.01  Aligned_cols=39  Identities=38%  Similarity=0.727  Sum_probs=33.0

Q ss_pred             CccchhCCccccCCCCCceEEecC---CcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKN---NKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~---~~~kl~dfgla~~~~   39 (93)
                      |.|||.++++|++|++.||+++..   ..++|+|||++....
T Consensus       134 l~~LH~~~i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~~~~  175 (287)
T 2wei_A          134 ITYMHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQ  175 (287)
T ss_dssp             HHHHHHTTCCCSCCCGGGEEESCSSTTCCEEECSTTGGGTBC
T ss_pred             HHHHHHCCeeccCCChhhEEEecCCCcccEEEeccCcceeec
Confidence            468999999999999999999653   469999999986543

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=98.26  E-value=2.2e-07  Score=63.51  Aligned_cols=38  Identities=34%  Similarity=0.645  Sum_probs=34.5

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|||.++++|++|+|.||+++..+.++|+|||++...
T Consensus       147 L~~LH~~~ivH~dlkp~NIl~~~~~~~kl~dfg~~~~~  184 (317)
T 2buj_A          147 LEAIHAKGYAHRDLKPTNILLGDEGQPVLMDLGSMNQA  184 (317)
T ss_dssp             HHHHHHTTEECCCCCGGGEEECTTSCEEECCCSSCEES
T ss_pred             HHHHHhCCcccCCCCHHHEEEcCCCCEEEEecCcchhc
Confidence            46899999999999999999999999999999987654

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=97.82  E-value=5.6e-06  Score=56.60  Aligned_cols=34  Identities=12%  Similarity=0.082  Sum_probs=30.3

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL   34 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgl   34 (93)
                      |.|||+++++|+||++.||+++.++.++|.+++.
T Consensus       142 L~~lH~~givH~Dikp~NIll~~~g~~kl~~~~~  175 (286)
T 3uqc_A          142 ADAAHRAGVALSIDHPSRVRVSIDGDVVLAYPAT  175 (286)
T ss_dssp             HHHHHHTTCCCCCCSGGGEEEETTSCEEECSCCC
T ss_pred             HHHHHHCCCccCCCCcccEEEcCCCCEEEEeccc
Confidence            4689999999999999999999999999886654

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=97.37  E-value=4.2e-05  Score=55.66  Aligned_cols=35  Identities=26%  Similarity=0.468  Sum_probs=29.1

Q ss_pred             CccchhCCccccCCCCCceEEecCC----------cEEEeecccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNN----------KVVITDFGLF   35 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~----------~~kl~dfgla   35 (93)
                      |.+||..++||+||+|.|||++.++          .+.++||+=+
T Consensus       218 l~~lH~~gIVHrDLKp~NILl~~dgd~~d~~~~~~~~~iID~~Q~  262 (397)
T 4gyi_A          218 ILRLAKHGLIHGDFNEFNILIREEKDAEDPSSITLTPIIIXFPQM  262 (397)
T ss_dssp             HHHHHHTTEECSCCSTTSEEEEEEECSSCTTSEEEEEEECCCTTC
T ss_pred             HHHHHHCCCcCCCCCHHHEEEeCCCCcccccccccceEEEEeCCc
Confidence            3579999999999999999998655          3678998843

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=96.00  E-value=0.0019  Score=42.18  Aligned_cols=32  Identities=22%  Similarity=0.254  Sum_probs=26.8

Q ss_pred             CccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            8 GILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         8 ~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      +++|+|+.+.||+++....+.++||+.+.+..
T Consensus       185 ~l~HgDl~~~Nil~~~~~~~~liD~~~a~~g~  216 (264)
T 1nd4_A          185 VVTHGDACLPNIMVENGRFSGFIDCGRLGVAD  216 (264)
T ss_dssp             EEECSSCCGGGEEEETTEEEEECCCTTCEEEE
T ss_pred             EEECCCCCCCcEEEECCcEEEEEcchhcccCC
Confidence            49999999999999866556799999876554

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=94.61  E-value=0.017  Score=38.14  Aligned_cols=33  Identities=24%  Similarity=0.293  Sum_probs=26.7

Q ss_pred             CCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            7 RGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         7 ~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      ..++|+|+.+.||+++....+.++||+.+.+..
T Consensus       183 ~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~~gd  215 (263)
T 3tm0_A          183 LVFSHGDLGDSNIFVKDGKVSGFIDLGRSGRAD  215 (263)
T ss_dssp             EEEECSSCCTTSEEEETTEEEEECCCTTCEEEE
T ss_pred             ceEECCCCCcCcEEEECCcEEEEEEchhcccCC
Confidence            458999999999999765556799999876543

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=93.82  E-value=0.035  Score=37.62  Aligned_cols=33  Identities=18%  Similarity=0.456  Sum_probs=27.8

Q ss_pred             hCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            6 ARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         6 s~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      ...++|+|+.+.||+++....+.++||+.+.+.
T Consensus       221 ~~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~~g  253 (346)
T 2q83_A          221 SPNLCHQDYGTGNTLLGENEQIWVIDLDTVSFD  253 (346)
T ss_dssp             SCCEECSSCSTTSEEECGGGCEEECCCTTCEEC
T ss_pred             cCceecCCCCcccEEEeCCCcEEEEehhhcccC
Confidence            357999999999999976777899999987544

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=93.25  E-value=0.035  Score=38.50  Aligned_cols=33  Identities=18%  Similarity=0.418  Sum_probs=26.7

Q ss_pred             CCccccCCCCCceEEecCC--cEEEeecccccccc
Q psy700            7 RGILHKDLKSKNIFIEKNN--KVVITDFGLFNFSK   39 (93)
Q Consensus         7 ~~iihrdlk~~nill~~~~--~~kl~dfgla~~~~   39 (93)
                      ..++|+|+.+.||+++.+.  .+.++||+.+.+..
T Consensus       216 ~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~g~  250 (359)
T 3dxp_A          216 TSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTLGH  250 (359)
T ss_dssp             CEEECSSCSGGGEEECSSSSCEEEECCCTTCEEEC
T ss_pred             ceEEeCCCCCCcEEEeCCCCcEEEEECccccccCC
Confidence            4689999999999998654  35899999886543

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=93.10  E-value=0.053  Score=35.78  Aligned_cols=33  Identities=15%  Similarity=0.289  Sum_probs=27.4

Q ss_pred             CccccCCCCCceEEecCCcEEEeeccccccccc
Q psy700            8 GILHKDLKSKNIFIEKNNKVVITDFGLFNFSKL   40 (93)
Q Consensus         8 ~iihrdlk~~nill~~~~~~kl~dfgla~~~~~   40 (93)
                      .++|.|+.+.||+++....+.|+||+.+.+..+
T Consensus       194 ~l~HGDl~~~Nil~~~~~~~~viDwe~a~~gdp  226 (272)
T 4gkh_A          194 VVTHGDFSLDNLIFDEGKLIGCIDVGRVGIADR  226 (272)
T ss_dssp             EEECSCCCTTSEEEETTEEEEECCCTTCEEEET
T ss_pred             EEEcCCCCCCeEEEECCeEEEEEECcccccCCH
Confidence            479999999999998776677999998876543

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}

Probab=92.46  E-value=0.042  Score=39.14  Aligned_cols=33  Identities=15%  Similarity=0.404  Sum_probs=27.5

Q ss_pred             hCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            6 ARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         6 s~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      ...++|+|+.+.||+++... +.++||+.+.+..
T Consensus       231 ~~~liHGDl~~~Nil~~~~~-~~lID~e~a~~G~  263 (420)
T 2pyw_A          231 AQALIHGDLHTGSVMVTQDS-TQVIDPEFSFYGP  263 (420)
T ss_dssp             CCEEECSCCSGGGEEECSSC-EEECCCTTCEEEC
T ss_pred             CCeEEecCCCCCcEEEeCCC-CEEEeCcccccCc
Confidence            45689999999999998665 8999998876654

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=91.86  E-value=0.071  Score=36.11  Aligned_cols=33  Identities=30%  Similarity=0.469  Sum_probs=27.3

Q ss_pred             CccccCCCCCceEEec--CCcEEEeeccccccccc
Q psy700            8 GILHKDLKSKNIFIEK--NNKVVITDFGLFNFSKL   40 (93)
Q Consensus         8 ~iihrdlk~~nill~~--~~~~kl~dfgla~~~~~   40 (93)
                      .++|+|+.+.||+++.  ...+.++||+.+....+
T Consensus       192 ~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~~~  226 (304)
T 3sg8_A          192 CLIHNDFSSDHILFDTEKNTICGIIDFGDAAISDP  226 (304)
T ss_dssp             EEECSCCCGGGEEEETTTTEEEEECCCTTCEEECT
T ss_pred             eeEeCCCCcccEEEeCCCCCEEEEEeCCCCccCCh
Confidence            5899999999999987  45678999998866543

>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6

Probab=91.14  E-value=0.068  Score=36.25  Aligned_cols=32  Identities=25%  Similarity=0.381  Sum_probs=26.2

Q ss_pred             CCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            7 RGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         7 ~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      .+++|+|+.+.||++.....+.++||+.+...
T Consensus       187 ~~liHgDl~~~Nil~~~~~~~~lIDf~~a~~g  218 (322)
T 2ppq_A          187 AGVIHADLFQDNVFFLGDELSGLIDFYFACND  218 (322)
T ss_dssp             EEEECSCCCGGGEEEETTEEEEECCCTTCEEE
T ss_pred             cccCCCCCCccCEEEeCCceEEEecchhccCc
Confidence            46899999999999987655679999877554

>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}

Probab=90.37  E-value=0.12  Score=35.29  Aligned_cols=34  Identities=18%  Similarity=0.312  Sum_probs=27.9

Q ss_pred             CCccccCCCCCceEEecC----CcEEEeeccccccccc
Q psy700            7 RGILHKDLKSKNIFIEKN----NKVVITDFGLFNFSKL   40 (93)
Q Consensus         7 ~~iihrdlk~~nill~~~----~~~kl~dfgla~~~~~   40 (93)
                      ..++|+|+.+.||++...    ..+.++||+.+.....
T Consensus       183 ~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~G~~  220 (333)
T 3csv_A          183 MVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKLGHR  220 (333)
T ss_dssp             CEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEEECT
T ss_pred             CeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCcCCC
Confidence            468999999999999764    5689999998776543

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=90.30  E-value=0.11  Score=35.71  Aligned_cols=34  Identities=15%  Similarity=0.277  Sum_probs=26.9

Q ss_pred             hCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            6 ARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         6 s~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      ...++|+|+.+.||+++....+.++||..+.+..
T Consensus       221 ~~~l~HgDl~~~Nil~~~~~~~~vIDwe~a~~g~  254 (357)
T 3ats_A          221 EPVLLWGDARVGNVLYRDFQPVAVLDWEMVALGP  254 (357)
T ss_dssp             CCEEECSSCSGGGEEEETTEEEEECCGGGCEEEC
T ss_pred             CceEEeCCCCCCeEEEeCCcEEEEEcccccccCC
Confidence            3468999999999999854446899999876543

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=90.21  E-value=0.14  Score=35.00  Aligned_cols=35  Identities=23%  Similarity=0.303  Sum_probs=27.1

Q ss_pred             CCccccCCCCCceEEec---CCc-EEEeecccccccccc
Q psy700            7 RGILHKDLKSKNIFIEK---NNK-VVITDFGLFNFSKLY   41 (93)
Q Consensus         7 ~~iihrdlk~~nill~~---~~~-~kl~dfgla~~~~~~   41 (93)
                      ..++|+|+.+.|++++.   .+. +.++||+.+.+..+.
T Consensus       190 ~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~~gd~~  228 (306)
T 3tdw_A          190 PRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAISDPD  228 (306)
T ss_dssp             CEEECSCCSGGGEEECTTCSSCCEEEECCCTTCEEECGG
T ss_pred             CeeEeCCCCcccEEEecCCCCCceEEEEehhhcCCCCHH
Confidence            35799999999999987   344 589999987665433

>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*

Probab=87.78  E-value=0.26  Score=34.15  Aligned_cols=36  Identities=14%  Similarity=0.254  Sum_probs=29.1

Q ss_pred             CCccccCCCCCceEEecCCcEEEeeccccccccccC
Q psy700            7 RGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYN   42 (93)
Q Consensus         7 ~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~   42 (93)
                      ..++|.|+.+.|++++....+.++||..+.+..+..
T Consensus       206 ~~~~HgD~~~~N~l~~~~~~~~~iD~e~~~~~~~~~  241 (339)
T 3i1a_A          206 YVLCHSDIHAGNVLVGNEESIYIIDWDEPMLAPKER  241 (339)
T ss_dssp             CEEECSCCCGGGEEECGGGCEEECCCSSCEEECTHH
T ss_pred             ceeEeCCCCcCCEEEeCCCeEEEEECCCCeeCCHHH
Confidence            468999999999999876778999998876655443

>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6

Probab=86.40  E-value=0.32  Score=32.98  Aligned_cols=33  Identities=18%  Similarity=0.097  Sum_probs=26.5

Q ss_pred             CCccccCCCCCceEEecCCcEEEeecccccccccc
Q psy700            7 RGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLY   41 (93)
Q Consensus         7 ~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~   41 (93)
                      ..++|+|+.+.||+++ + .+.++||..+......
T Consensus       195 ~~l~HgD~~~~Nil~~-~-~~~lIDfe~a~~g~~~  227 (328)
T 1zyl_A          195 VLRLHGDCHAGNILWR-D-GPMFVDLDDARNGPAV  227 (328)
T ss_dssp             CEECCSSCSGGGEEES-S-SEEECCCTTCCEECTT
T ss_pred             eeeeeCCCCcccEeEc-C-CCEEEECCCCCcCcHH
Confidence            4579999999999998 4 7889999887655433

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=84.54  E-value=0.46  Score=33.27  Aligned_cols=32  Identities=19%  Similarity=0.385  Sum_probs=25.6

Q ss_pred             CCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            7 RGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         7 ~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      ..++|+|+.+.||++..+ .+.++||.++.+..
T Consensus       227 ~~L~HGDl~~~Nil~~~~-~~~lID~e~a~~G~  258 (397)
T 2olc_A          227 ETLIHGDLHTGSIFASEH-ETKVIDPEFAFYGP  258 (397)
T ss_dssp             CEEECSCCSGGGEEECSS-CEEECCCTTCEEEC
T ss_pred             CceeeCCCCcCcEEEeCC-CeEEEeCcccccCC
Confidence            468999999999999754 47899998765543

>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}

Probab=83.88  E-value=0.53  Score=31.70  Aligned_cols=31  Identities=16%  Similarity=0.299  Sum_probs=25.1

Q ss_pred             CccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            8 GILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         8 ~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      .++|+|+.+.|++ ...+.+.++||..+....
T Consensus       174 ~l~HgDl~~~Nil-~~~~~~~lID~e~a~~g~  204 (301)
T 3dxq_A          174 AACHCDPLCENFL-DTGERMWIVDWEYSGMND  204 (301)
T ss_dssp             EEECSCCCGGGEE-ECSSCEEECCCTTCEEEC
T ss_pred             eeeccCCCcCCEE-ECCCCEEEEecccccCCC
Confidence            4899999999999 455667999998876544

>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*

Probab=82.96  E-value=0.5  Score=32.80  Aligned_cols=31  Identities=26%  Similarity=0.387  Sum_probs=24.3

Q ss_pred             CCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            7 RGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         7 ~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      ..++|.|+.+.||++.... +.++||..+...
T Consensus       212 ~~l~HgDl~~~Nil~~~~~-~~lID~e~a~~g  242 (369)
T 3c5i_A          212 IVFCHNDLQENNIINTNKC-LRLIDFEYSGFN  242 (369)
T ss_dssp             EEEECSCCCGGGEEECC-C-EEECCCTTCEEE
T ss_pred             eEEEeCCCCcccEEecCCc-EEEEEecCCCCC
Confidence            3589999999999987544 789999876543

>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8

Probab=81.17  E-value=0.55  Score=33.77  Aligned_cols=31  Identities=29%  Similarity=0.583  Sum_probs=24.4

Q ss_pred             CccccCCCCCceEEecC----------------------------CcEEEeeccccccc
Q psy700            8 GILHKDLKSKNIFIEKN----------------------------NKVVITDFGLFNFS   38 (93)
Q Consensus         8 ~iihrdlk~~nill~~~----------------------------~~~kl~dfgla~~~   38 (93)
                      .++|.|+.+.||++...                            ..+.++||..+...
T Consensus       250 v~~H~Dl~~gNiL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lIDfEya~~g  308 (429)
T 1nw1_A          250 TFCHNDLQEGNILLPKASSGNIRMPSLSDETQALGNSLSAFNPADPRLVLIDFEYASYN  308 (429)
T ss_dssp             EEECSCCCGGGEEEEC------------------------------CCEECCCTTCEEE
T ss_pred             EEEeCCCCCCeEEeeCCccccccccccccccccccccccccccCCCeEEEEecccCCcC
Confidence            58999999999999864                            56889999776543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	93
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	4e-09
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	1e-08
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	2e-08
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	4e-08
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	4e-08
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	1e-07
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	1e-07
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	1e-07
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	3e-07
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	4e-07
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	4e-07
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	5e-07
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	6e-07
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	6e-07
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	7e-07
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	7e-07
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	8e-07
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	9e-07
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	2e-06
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	3e-06
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	4e-06
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	5e-06
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	5e-06
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	5e-06
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	5e-06
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	5e-06
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	7e-06
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	9e-06
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	9e-06
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	1e-05
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	1e-05
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	2e-05
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	2e-05
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	2e-05
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	3e-05
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	3e-05
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	3e-05
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	5e-05
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	5e-05
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	6e-05
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	8e-05
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	1e-04
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	1e-04
d1zara2	191	d.144.1.9 (A:91-281) Rio2 serine protein kinase C-	1e-04
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	2e-04
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	2e-04
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	3e-04
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	4e-04
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	7e-04
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	8e-04
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	8e-04
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	9e-04
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	0.001
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	0.002
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	0.003
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	0.003
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	0.004

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (117), Expect = 4e-09
 Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 3/55 (5%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLG 55
           M YLHA+ I+H+DLKS NIF+ ++  V I DFGL   + + + ++ + +     G
Sbjct: 117 MDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGL---ATVKSRWSGSHQFEQLSG 168

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (114), Expect = 1e-08
 Identities = 10/34 (29%), Positives = 22/34 (64%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           + Y H++ ++H+D+K +N+ +    ++ I DFG 
Sbjct: 119 LSYCHSKRVIHRDIKPENLLLGSAGELKIADFGW 152

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (112), Expect = 2e-08
 Identities = 14/55 (25%), Positives = 25/55 (45%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLG 55
           M +L  +  +H+DL ++N+ +     V I DFGL       ++Y        P+ 
Sbjct: 177 MEFLEFKSCVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVK 231

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (110), Expect = 4e-08
 Identities = 13/34 (38%), Positives = 21/34 (61%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           + YLH   I+H+DLK+ NI    +  + + DFG+
Sbjct: 123 LNYLHDNKIIHRDLKAGNILFTLDGDIKLADFGV 156

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.5 bits (110), Expect = 4e-08
 Identities = 14/44 (31%), Positives = 26/44 (59%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSY 44
           + YLH+  ++H+D+K+ NI + +   V + DFG  +     NS+
Sbjct: 128 LAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPANSF 171

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.2 bits (106), Expect = 1e-07
 Identities = 20/72 (27%), Positives = 31/72 (43%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEE 60
           M YL  R  +H+DL ++N  + +N  V I DFGL       + Y ++   + P+     E
Sbjct: 153 MAYLSERKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPE 212

Query: 61  EEEKEEEGEEED 72
                    E D
Sbjct: 213 SIFYNRYTTESD 224

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (106), Expect = 1e-07
 Identities = 12/53 (22%), Positives = 21/53 (39%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSP 53
           M Y+     +H+DL++ NI + +N    + DFGL    +              
Sbjct: 126 MAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPI 178

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (106), Expect = 1e-07
 Identities = 15/45 (33%), Positives = 27/45 (60%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYT 45
           + YLH  GI H+D+K +N+ +++ + + I+DFGL    +  N   
Sbjct: 116 VVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRER 160

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 44.3 bits (104), Expect = 3e-07
 Identities = 13/46 (28%), Positives = 22/46 (47%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTS 46
           +  LH   I+H+DLK +NI ++ +  + +TDFG             
Sbjct: 123 ICALHKLNIVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGEKLRE 168

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (102), Expect = 4e-07
 Identities = 18/55 (32%), Positives = 26/55 (47%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLG 55
           M +L +R  +H+DL ++NI + + N V I DFGL         Y        PL 
Sbjct: 147 MEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLK 201

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.6 bits (102), Expect = 4e-07
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLG 55
           M YL     +H+DL ++NI +  N    ++DFGL   S+     TS+   +S LG
Sbjct: 141 MKYLADMNYVHRDLAARNILVNSNLVCKVSDFGL---SRFLEDDTSDPTYTSALG 192

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (102), Expect = 5e-07
 Identities = 16/46 (34%), Positives = 20/46 (43%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTS 46
           +G      I H+DLKSKNI ++KN    I D GL            
Sbjct: 121 VGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTID 166

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (101), Expect = 6e-07
 Identities = 14/46 (30%), Positives = 25/46 (54%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTS 46
           M YL  +  +H+DL ++N+ +   +   I+DFGL       +SY +
Sbjct: 122 MKYLEEKNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYT 167

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (101), Expect = 6e-07
 Identities = 12/37 (32%), Positives = 19/37 (51%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNF 37
           M ++  R  +H+DL++ NI +       I DFGL   
Sbjct: 122 MAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARL 158

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (101), Expect = 7e-07
 Identities = 15/55 (27%), Positives = 26/55 (47%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLG 55
           M +L ++  +H+DL ++NI +       I DFGL    K  ++Y        P+ 
Sbjct: 158 MAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVK 212

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (101), Expect = 7e-07
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 1   MGYLHARG-----ILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTS 46
           +   H R      +LH+DLK  N+F++    V + DFGL        S+  
Sbjct: 122 LKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAK 172

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (100), Expect = 8e-07
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 1   MGYLHAR-GILHKDLKSKNIFIEKNNKVVITDFGL 34
           + YL  +  I+H+D+K  NI +    ++ + DFG+
Sbjct: 117 LTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGV 151

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (100), Expect = 9e-07
 Identities = 15/47 (31%), Positives = 25/47 (53%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSN 47
           + +LH+  ++H+D+KS NI +  +  V +TDFG         S  S 
Sbjct: 129 LEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRST 175

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (98), Expect = 2e-06
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 3/48 (6%)

Query: 1   MGYLHARG--ILHKDLKSKNIFI-EKNNKVVITDFGLFNFSKLYNSYT 45
           + +LH R   I+H+DLK  NIFI      V I D GL    +   +  
Sbjct: 125 LQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAKA 172

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (96), Expect = 3e-06
 Identities = 19/55 (34%), Positives = 35/55 (63%), Gaps = 3/55 (5%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLG 55
           + YLH +GI+H+DLK +NI + ++  + ITDFG    +K+ +  +   + +S +G
Sbjct: 121 LEYLHGKGIIHRDLKPENILLNEDMHIQITDFGT---AKVLSPESKQARANSFVG 172

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (95), Expect = 4e-06
 Identities = 14/46 (30%), Positives = 25/46 (54%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTS 46
           MGYL ++  +H+DL ++N+ +   + V I DFGL       + +  
Sbjct: 124 MGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYV 169

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (94), Expect = 5e-06
 Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 3/72 (4%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEE 60
           M YL  +  +H+DL ++NI + +N    I DFGL   S+    Y        P+     E
Sbjct: 140 MDYLSQKQFIHRDLAARNILVGENYVAKIADFGL---SRGQEVYVKKTMGRLPVRWMAIE 196

Query: 61  EEEKEEEGEEED 72
                      D
Sbjct: 197 SLNYSVYTTNSD 208

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (94), Expect = 5e-06
 Identities = 17/55 (30%), Positives = 26/55 (47%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLG 55
           M YL  R ++H+DL ++N+ ++    V ITDFGL             E    P+ 
Sbjct: 124 MNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIK 178

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (95), Expect = 5e-06
 Identities = 11/48 (22%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 1   MGYLHARGILHKDLKSKNIFI--EKNNKVVITDFGLFNFSKLYNSYTS 46
           + +LH+  I H D++ +NI     +++ + I +FG     K  +++  
Sbjct: 115 LQFLHSHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNFRL 162

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.5 bits (94), Expect = 5e-06
 Identities = 16/33 (48%), Positives = 26/33 (78%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFG 33
           + YLH++ I+++DLK +NI ++KN  + ITDFG
Sbjct: 117 LEYLHSKDIIYRDLKPENILLDKNGHIKITDFG 149

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (94), Expect = 5e-06
 Identities = 14/46 (30%), Positives = 27/46 (58%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTS 46
           + +LH+  ++H+DLK +NI +  + ++ + DFGL        + TS
Sbjct: 129 LDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMALTS 174

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.1 bits (93), Expect = 7e-06
 Identities = 12/34 (35%), Positives = 24/34 (70%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           + ++H R ++++DLK  NI ++++  V I+D GL
Sbjct: 120 LEHMHNRFVVYRDLKPANILLDEHGHVRISDLGL 153

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.7 bits (92), Expect = 9e-06
 Identities = 13/37 (35%), Positives = 22/37 (59%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNF 37
           M YL  +  +H+DL ++N  + +N+ V + DFGL   
Sbjct: 128 MEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRL 164

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 39.7 bits (92), Expect = 9e-06
 Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 2/36 (5%)

Query: 1   MGYLHARGILHKDLKSKNIFI--EKNNKVVITDFGL 34
           + ++H    +H DLK +NI    +++N++ + DFGL
Sbjct: 137 LCHMHENNYVHLDLKPENIMFTTKRSNELKLIDFGL 172

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (91), Expect = 1e-05
 Identities = 14/53 (26%), Positives = 24/53 (45%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSP 53
           M YL ++  LH+DL ++N  +     V ++DFGL  +       +S       
Sbjct: 113 MEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPV 165

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.4 bits (91), Expect = 1e-05
 Identities = 12/34 (35%), Positives = 23/34 (67%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
             YLH+  ++++DLK +N+ I++   + +TDFG 
Sbjct: 154 FEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGF 187

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (90), Expect = 2e-05
 Identities = 13/53 (24%), Positives = 25/53 (47%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSP 53
           M YL    ++H+DL ++N  + +N  + ++DFG+  F       +S       
Sbjct: 114 MAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPV 166

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (90), Expect = 2e-05
 Identities = 14/45 (31%), Positives = 28/45 (62%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYT 45
           + YLH+R ++++D+K +N+ ++K+  + ITDFGL        +  
Sbjct: 118 LEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATM 162

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (89), Expect = 2e-05
 Identities = 13/34 (38%), Positives = 23/34 (67%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           + Y+H   ILH+D+K+ N+ I ++  + + DFGL
Sbjct: 130 LYYIHRNKILHRDMKAANVLITRDGVLKLADFGL 163

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 3e-05
 Identities = 15/47 (31%), Positives = 28/47 (59%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSN 47
           +G+ H+R +LH+DLK +N+ I +N ++ + +FGL     +     S 
Sbjct: 114 LGFCHSRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIPVRCYSA 160

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (89), Expect = 3e-05
 Identities = 13/46 (28%), Positives = 23/46 (50%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTS 46
           M YL     +H+DL ++N+ +   +   I+DFGL    +   +Y  
Sbjct: 120 MKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYK 165

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 3e-05
 Identities = 13/37 (35%), Positives = 21/37 (56%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNF 37
           + Y+H+  +LH+DLK  N+ +     + I DFGL   
Sbjct: 122 LKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARV 158

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (87), Expect = 5e-05
 Identities = 11/33 (33%), Positives = 21/33 (63%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFG 33
           M YL     +H+DL ++N+ + ++N   ++DFG
Sbjct: 116 MEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFG 148

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 37.7 bits (87), Expect = 5e-05
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 2/36 (5%)

Query: 1   MGYLHARGILHKDLKSKNIFIE--KNNKVVITDFGL 34
           + ++H   I+H D+K +NI  E  K + V I DFGL
Sbjct: 140 LKHMHEHSIVHLDIKPENIMCETKKASSVKIIDFGL 175

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 37.6 bits (86), Expect = 6e-05
 Identities = 15/34 (44%), Positives = 23/34 (67%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           + Y H R +LH+DLK +N+ I +  ++ I DFGL
Sbjct: 113 IAYCHDRRVLHRDLKPQNLLINREGELKIADFGL 146

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (85), Expect = 8e-05
 Identities = 12/47 (25%), Positives = 28/47 (59%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSN 47
           + YL ++  +H+D+ ++N+ +  N+ V + DFGL  + +    Y ++
Sbjct: 121 LAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKAS 167

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 1e-04
 Identities = 16/34 (47%), Positives = 26/34 (76%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           + +LH  GI+++D+K +NI ++ N  VV+TDFGL
Sbjct: 142 LEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGL 175

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 1e-04
 Identities = 14/46 (30%), Positives = 22/46 (47%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTS 46
           M YL     +H+DL ++NI +  N    ++DFGL    +     T 
Sbjct: 123 MKYLANMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATY 168

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 36.3 bits (83), Expect = 1e-04
 Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGL 34
           +   + RGI+H DL   N+ + +   + I DF  
Sbjct: 116 VAKFYHRGIVHGDLSQYNVLVSEEG-IWIIDFPQ 148

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 35.9 bits (82), Expect = 2e-04
 Identities = 9/39 (23%), Positives = 21/39 (53%), Gaps = 5/39 (12%)

Query: 1   MGYLHARGILHKDLKSKNIFIEK-----NNKVVITDFGL 34
           +  +H + ++++D+K  N  I +      N + + DFG+
Sbjct: 114 VQSIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGM 152

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (82), Expect = 2e-04
 Identities = 16/46 (34%), Positives = 32/46 (69%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTS 46
           + +LH++GI+++DLK  NI ++K+  + I DFG+   + L ++ T+
Sbjct: 116 LQFLHSKGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKTN 161

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (81), Expect = 3e-04
 Identities = 14/62 (22%), Positives = 28/62 (45%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEE 60
           M +L ++  +H+DL ++N  +++   V + DFGL          + + K  + L      
Sbjct: 143 MKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMA 202

Query: 61  EE 62
            E
Sbjct: 203 LE 204

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (81), Expect = 4e-04
 Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 1/38 (2%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVV-ITDFGLFNF 37
           + Y+H+ GI H+D+K +N+ ++ +  V+ + DFG    
Sbjct: 135 LAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQ 172

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (79), Expect = 7e-04
 Identities = 14/47 (29%), Positives = 22/47 (46%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSN 47
           + YLH+  I H+D+K +N+         I     F F+K   S+ S 
Sbjct: 124 IQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSL 170

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.4 bits (78), Expect = 8e-04
 Identities = 14/33 (42%), Positives = 22/33 (66%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFG 33
           + YLH   ILH+DLK  N+ +++N  + + DFG
Sbjct: 113 LEYLHQHWILHRDLKPNNLLLDENGVLKLADFG 145

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.4 bits (78), Expect = 8e-04
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 1   MGYLHARGILHKDLKSKNIFI---EKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEG 57
           + Y+H++  +H+D+K  N  +   +K N V I DFGL    +   ++       +    G
Sbjct: 116 IEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTG 175

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.3 bits (78), Expect = 9e-04
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNN-KVVITDFGLFNFSK 39
           + + H  G+LH+D+K +NI I+ N  ++ + DFG     K
Sbjct: 123 VRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLK 162

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.7 bits (76), Expect = 0.001
 Identities = 12/37 (32%), Positives = 21/37 (56%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNF 37
           + + H+  +LH+DLK +N+ I     + + DFGL   
Sbjct: 115 LAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARA 151

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 33.3 bits (75), Expect = 0.002
 Identities = 13/35 (37%), Positives = 24/35 (68%), Gaps = 1/35 (2%)

Query: 1   MGYLHARGILHKDLKSKNIFI-EKNNKVVITDFGL 34
           + Y H+ GI+H+D+K  N+ I  ++ K+ + D+GL
Sbjct: 142 LDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGL 176

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 32.8 bits (74), Expect = 0.003
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLG 55
           + + H  GI+H+D+K  NI I   N V + DFG+     + +S  S  + ++ +G
Sbjct: 124 LNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARA--IADSGNSVTQTAAVIG 176

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.9 bits (74), Expect = 0.003
 Identities = 17/72 (23%), Positives = 31/72 (43%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEE 60
           M YL ++  +H+DL ++N+ + ++N + I DFGL       + Y        P+     E
Sbjct: 148 MEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPE 207

Query: 61  EEEKEEEGEEED 72
                    + D
Sbjct: 208 ALFDRIYTHQSD 219

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.5 bits (73), Expect = 0.004
 Identities = 16/55 (29%), Positives = 27/55 (49%)

Query: 1   MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLG 55
           M YL+A   +H+DL ++N  + ++  V I DFG+       + Y    K   P+ 
Sbjct: 146 MAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVR 200

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	93
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	99.36
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	99.36
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	99.33
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	99.29
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	99.24
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	99.24
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	99.23
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	99.23
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	99.22
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	99.22
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	99.19
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	99.18
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	99.18
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	99.16
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	99.15
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	99.15
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	99.15
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	99.14
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	99.14
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	99.13
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	99.12
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	99.12
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	99.12
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	99.11
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	99.11
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	99.11
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	99.08
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	99.08
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	99.08
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	99.07
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	99.07
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	99.06
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	99.05
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	99.04
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	99.04
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	99.04
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	99.03
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	99.02
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	99.01
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	99.0
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	99.0
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	98.99
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	98.99
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	98.98
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	98.98
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	98.97
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	98.96
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	98.96
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	98.96
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	98.94
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	98.93
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	98.92
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	98.92
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	98.91
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	98.88
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	98.87
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	98.86
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	98.72
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	98.72
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	98.69
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	98.62
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	98.58
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	98.42
d2ppqa1	316	Homoserine kinase ThrB {Agrobacterium tumefaciens	93.08
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	92.53
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	91.92
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	85.37

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=8.1e-14  Score=94.71  Aligned_cols=62  Identities=37%  Similarity=0.509  Sum_probs=42.6

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++||||+|.||+++.++.+||+|||+|+...............++..|++||.-
T Consensus       117 l~yLH~~~ivHrDlKp~NiLl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l  178 (276)
T d1uwha_         117 MDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVI  178 (276)
T ss_dssp             HHHHHHTTCCCSCCCGGGEEEETTSSEEECCCCCSCC------------CCCCGGGCCHHHH
T ss_pred             HHHHhcCCEeccccCHHHEEEcCCCCEEEccccceeeccccCCcccccccccCcccCCHHHH
Confidence            46999999999999999999999999999999999776544433333444556666666653

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=8e-14  Score=94.91  Aligned_cols=62  Identities=31%  Similarity=0.412  Sum_probs=42.3

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++||||+|.||+++.++.+||+|||+|+...............++.+|++||.-
T Consensus       147 l~ylH~~~ivHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l  208 (299)
T d1ywna1         147 MEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETI  208 (299)
T ss_dssp             HHHHHHTTCCCSCCCGGGEEECGGGCEEECC------CCSCTTSCCTTSCCCGGGGCCHHHH
T ss_pred             HHHHHhCCCcCCcCCccceeECCCCcEEEccCcchhhccccccccccCceeeCccccchhHh
Confidence            46899999999999999999999999999999999765544443334444556666666644

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.3e-13  Score=93.56  Aligned_cols=62  Identities=29%  Similarity=0.427  Sum_probs=46.6

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++||||+|.||+++.++.+||+|||+|+...............++..|++||.-
T Consensus       116 l~ylH~~~IiHrDiKp~NILl~~~~~~KL~DFG~a~~~~~~~~~~~~~~~~GT~~Y~APE~~  177 (271)
T d1nvra_         116 VVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELL  177 (271)
T ss_dssp             HHHHHHTTEECSCCCGGGEEECTTCCEEECCCTTCEECEETTEECCBCCCCSCGGGSCTHHH
T ss_pred             HHHHHHcCCccCcccHHHEEECCCCCEEEccchhheeeccCCccccccceeeCcCccCHhHh
Confidence            46899999999999999999999999999999999876544333333334445555665543

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.8e-13  Score=94.51  Aligned_cols=62  Identities=24%  Similarity=0.365  Sum_probs=47.7

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++|+||||+|.||+++.++.+||+|||+|+...............++..|++||.-
T Consensus       177 l~yLH~~~IiHRDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~l  238 (325)
T d1rjba_         177 MEFLEFKSCVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESL  238 (325)
T ss_dssp             HHHHHHTTEEETTCSGGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHH
T ss_pred             HHHHHhCCeeeccCchhccccccCCeEEEeeccccccccCCCceeeeccccCCCccCChHHH
Confidence            46999999999999999999999999999999999876544443333344456666666643

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=9.2e-13  Score=90.59  Aligned_cols=62  Identities=29%  Similarity=0.424  Sum_probs=44.7

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++||||+|.||+++.++.+||+|||+|+...............++..|++||.-
T Consensus       124 l~yLH~~~iiHrDlKp~NIll~~~~~~kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l  185 (317)
T d1xkka_         124 MNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESI  185 (317)
T ss_dssp             HHHHHHTTCCCSCCCGGGEEEEETTEEEECCCSHHHHTTTTCC--------CCTTTSCHHHH
T ss_pred             HHHHHHcCcccCcchhhcceeCCCCCeEeeccccceecccccccccccccccCccccChHHH
Confidence            46899999999999999999999999999999999876544443333334456666666644

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=8.1e-13  Score=90.30  Aligned_cols=62  Identities=27%  Similarity=0.410  Sum_probs=43.0

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++||||+|.||+++.++.++|+|||+|+...............++.+|++||.-
T Consensus       121 l~ylH~~~iiHrDiKp~NIll~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~GT~~Y~APE~~  182 (288)
T d1uu3a_         121 LEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELL  182 (288)
T ss_dssp             HHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECC----------CCCCGGGCCHHHH
T ss_pred             HHhhccccEEcCcCCccccccCCCceEEecccccceecccCCcccccccccCCccccCceee
Confidence            46899999999999999999999999999999999876543333333333445556666543

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=1.6e-12  Score=87.75  Aligned_cols=61  Identities=25%  Similarity=0.403  Sum_probs=46.1

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++||||+|.||+++.++.+||+|||+|+......... .....++.+|++||.-
T Consensus       122 l~~lH~~~ivHrDiKp~NIll~~~~~~Kl~DFGla~~~~~~~~~~-~~~~~gt~~y~APE~~  182 (272)
T d1qpca_         122 MAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTA-REGAKFPIKWTAPEAI  182 (272)
T ss_dssp             HHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECSSSCEEC-CTTCCCCTTTSCHHHH
T ss_pred             HHHHHhCCcccCccchhheeeecccceeeccccceEEccCCcccc-ccccCCcccccChHHH
Confidence            468999999999999999999999999999999998765333222 2233445566666644

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.23  E-value=8e-13  Score=90.23  Aligned_cols=63  Identities=29%  Similarity=0.396  Sum_probs=47.9

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEEE   63 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~~   63 (93)
                      |.|||+.+++|+||++.||+++.++.+||+|||+|+..............+++.+|+||+...
T Consensus       153 l~ylH~~~ivHrDlKp~NILld~~~~~Kl~DFGls~~~~~~~~~~~~~~~~~~~~y~aPE~~~  215 (301)
T d1lufa_         153 MAYLSERKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIF  215 (301)
T ss_dssp             HHHHHHTTCCCSCCSGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHH
T ss_pred             hhhcccCCeEeeEEcccceEECCCCcEEEccchhheeccCCccccccCCCCcCcCcCCHHHHc
Confidence            468999999999999999999999999999999997655444444444455667777777654

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.22  E-value=5.8e-13  Score=90.74  Aligned_cols=60  Identities=25%  Similarity=0.408  Sum_probs=44.4

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||+++++||||+|.||+++.++.+||+|||+|+............ ..++..|++|+.
T Consensus       128 L~yLH~~~iiHrDlKp~NILl~~~~~~Kl~DFG~a~~~~~~~~~~~~~-~~g~~~y~aPE~  187 (287)
T d1opja_         128 MEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAG-AKFPIKWTAPES  187 (287)
T ss_dssp             HHHHHHTTCCCSCCSGGGEEECGGGCEEECCCCCTTTCCSSSSEEETT-EEECGGGCCHHH
T ss_pred             HHHHHHCCcccCccccCeEEECCCCcEEEccccceeecCCCCceeecc-ccccccccChHH
Confidence            469999999999999999999999999999999998655333322222 233445555554

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1.1e-12  Score=88.85  Aligned_cols=62  Identities=24%  Similarity=0.322  Sum_probs=39.7

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCC-CCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSY-TSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~-~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++||||+|.||+++.++.+||+|||+|+........ .......++..|+|||.-
T Consensus       123 l~~lH~~~iiHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~gt~~Y~APE~l  185 (283)
T d1mqba_         123 MKYLANMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAI  185 (283)
T ss_dssp             HHHHHHTTCCCSCCCGGGEEECTTCCEEECCCCC-----------------CCCGGGSCHHHH
T ss_pred             hhhccccccccCccccceEEECCCCeEEEcccchhhcccCCCccceEeccCCCCccccCHHHH
Confidence            46899999999999999999999999999999999765433222 122333456666666643

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=2.7e-12  Score=87.91  Aligned_cols=60  Identities=25%  Similarity=0.340  Sum_probs=44.0

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++||||+|.||+++.++.++|+|||+|+....... . .....++.+|++||.-
T Consensus       129 L~yLH~~~iiHrDiKp~NILl~~~~~vkl~DFG~a~~~~~~~~-~-~~~~~gt~~Y~aPE~~  188 (293)
T d1yhwa1         129 LEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQS-K-RSTMVGTPYWMAPEVV  188 (293)
T ss_dssp             HHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSTTC-C-BCCCCSCGGGCCHHHH
T ss_pred             HHHHHHCCCcccCCcHHHeEECCCCcEeeccchhheeeccccc-c-ccccccCCCccChhhh
Confidence            4699999999999999999999999999999999876542221 1 2223344555555543

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.18  E-value=3.4e-12  Score=87.87  Aligned_cols=56  Identities=25%  Similarity=0.328  Sum_probs=42.8

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++||||+|.||+++.++.++|+|||+|......     . ...++.+|+|||.-
T Consensus       128 L~yLH~~~iiHrDiKp~NILl~~~~~~Kl~DFG~a~~~~~~-----~-~~~GT~~Y~APE~~  183 (309)
T d1u5ra_         128 LAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPA-----N-SFVGTPYWMAPEVI  183 (309)
T ss_dssp             HHHHHHTTCBCCCCSGGGEEEETTTEEEECCCTTCBSSSSB-----C-CCCSCGGGCCHHHH
T ss_pred             HHHHHhCCEeccCCCcceEEECCCCCEEEeecccccccCCC-----C-ccccCccccCHHHH
Confidence            46999999999999999999999999999999998754322     1 22344555555543

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=2.3e-12  Score=86.50  Aligned_cols=61  Identities=25%  Similarity=0.406  Sum_probs=37.2

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|+|+++++||||+|.||+++.++.+||+|||+|+............ ..++..|++||.-
T Consensus       114 l~~lH~~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~-~~gt~~y~aPE~l  174 (263)
T d1sm2a_         114 MAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTG-TKFPVKWASPEVF  174 (263)
T ss_dssp             HHHHHHTTCCCTTCSGGGEEECGGGCEEECSCC-------------------CTTSCCHHHH
T ss_pred             HHhhhccceeecccchhheeecCCCCeEecccchheeccCCCceeecc-eecCcccCChHHh
Confidence            468999999999999999999999999999999997665433332222 3345556666543

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.16  E-value=5.4e-12  Score=87.02  Aligned_cols=57  Identities=30%  Similarity=0.468  Sum_probs=43.4

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++||||+|.||+++.++.++|+|||+|+......    . ...++..|++||.-
T Consensus       117 l~~lH~~~iiHrDiKp~NILl~~~g~vkL~DFG~a~~~~~~~----~-~~~Gt~~Y~APE~l  173 (316)
T d1fota_         117 LEYLHSKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDVT----Y-TLCGTPDYIAPEVV  173 (316)
T ss_dssp             HHHHHTTTEECCCCCGGGEEECTTSCEEECCCSSCEECSSCB----C-CCCSCTTTCCHHHH
T ss_pred             hhhhccCcEEccccCchheeEcCCCCEEEecCccceEecccc----c-cccCcccccCHHHH
Confidence            468999999999999999999999999999999997654322    1 22344555555543

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=2.5e-12  Score=86.72  Aligned_cols=58  Identities=21%  Similarity=0.373  Sum_probs=43.3

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++||||+|.||+++.++.++|+|||+|.......    .....++..|++||.-
T Consensus       119 l~~lH~~~ivHrDiKp~Nill~~~~~~kl~DFG~a~~~~~~~----~~~~~Gt~~Y~APE~~  176 (263)
T d2j4za1         119 LSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSR----RTTLCGTLDYLPPEMI  176 (263)
T ss_dssp             HHHHHHTTCCCCCCCGGGEEECTTSCEEECCCCSCSCCCCCC----CEETTEEGGGCCHHHH
T ss_pred             HHHHHHCCeeeeeeccccceecCCCCEeecccceeeecCCCc----ccccCCCCcccCHHHH
Confidence            468999999999999999999999999999999987554222    1122344555555544

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.15  E-value=3.3e-12  Score=87.38  Aligned_cols=62  Identities=29%  Similarity=0.368  Sum_probs=36.4

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCC---CCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYT---SNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~---~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++||||+|.||+++.++.+||+|||+|+.........   ......++..|++|+.-
T Consensus       141 l~yLH~~~iiHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~  205 (299)
T d1jpaa_         141 MKYLADMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAI  205 (299)
T ss_dssp             HHHHHHTTCCCSCCCGGGEEECTTCCEEECCC-----------------------CGGGSCHHHH
T ss_pred             HHHHhhCCCccCccccceEEECCCCcEEECCcccceEccCCCCcceeeecccccCCccccCHHHH
Confidence            469999999999999999999999999999999997654332221   12222345656666543

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=1.1e-11  Score=84.08  Aligned_cols=59  Identities=29%  Similarity=0.410  Sum_probs=43.0

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEE   60 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e   60 (93)
                      |.|||+++++||||+|.||+++..+.+||+|||+|+........ .....+++.|.+|+.
T Consensus       113 L~~lH~~~iiHrDiKp~NIli~~~~~~KL~DFG~a~~~~~~~~~-~~~~~gt~~y~aPE~  171 (299)
T d1ua2a_         113 LEYLHQHWILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNRA-YTHQVVTRWYRAPEL  171 (299)
T ss_dssp             HHHHHHTTCCCCCCCGGGEEECTTCCEEECCCGGGSTTTSCCCC-CCCSCCCCTTCCHHH
T ss_pred             HHHhhccceecccCCcceEEecCCCccccccCccccccCCCccc-ccceecChhhccHHH
Confidence            46899999999999999999999999999999998765433222 222234444444443

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=6.5e-12  Score=87.49  Aligned_cols=60  Identities=25%  Similarity=0.376  Sum_probs=44.6

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++||||+|.||+++.++.++|+|||+|+.......  ......++.+|++||.-
T Consensus       118 l~ylH~~~iiHRDlKP~NILl~~~g~vkl~DFG~a~~~~~~~~--~~~~~~GT~~Y~aPE~~  177 (337)
T d1o6la_         118 LEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGA--TMKTFCGTPEYLAPEVL  177 (337)
T ss_dssp             HHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCCTTC--CBCCCEECGGGCCGGGG
T ss_pred             hhhhhhcCccccccCHHHeEecCCCCEEEeecccccccccCCc--ccccceeCHHHhhhhhc
Confidence            4689999999999999999999999999999999975542222  22223445556666543

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=6.8e-12  Score=85.43  Aligned_cols=62  Identities=27%  Similarity=0.392  Sum_probs=46.1

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCC-CCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYT-SNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~-~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++||||+|.||+++.++.+||+|||+|+......... ......++..|++||.-
T Consensus       122 L~ylH~~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~gt~~y~aPE~~  184 (285)
T d1u59a_         122 MKYLEEKNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECI  184 (285)
T ss_dssp             HHHHHHTTEECCCCSGGGEEEEETTEEEECCCTTCEECTTCSCEECCCCSSCCCGGGCCHHHH
T ss_pred             HHHHHhCCeecCcCchhheeeccCCceeeccchhhhcccccccccccccccccCccccChHHH
Confidence            468999999999999999999999999999999998765433222 22333455656555543

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.13  E-value=7.6e-12  Score=87.78  Aligned_cols=58  Identities=22%  Similarity=0.245  Sum_probs=43.0

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||+++++||||+|.||+++..+.+||+|||+|+......   .....+++.|++|+..
T Consensus       120 L~ylH~~~iiHrDlKP~NILl~~~g~iKl~DFGla~~~~~~~---~~~~~GT~~y~APE~~  177 (364)
T d1omwa3         120 LEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKK---PHASVGTHGYMAPEVL  177 (364)
T ss_dssp             HHHHHHTTEECCCCSGGGEEECSSSCEEECCCTTCEECSSSC---CCSCCSCGGGCCHHHH
T ss_pred             HHHHHHCCccceeeccceeEEcCCCcEEEeeeceeeecCCCc---ccccccccccchhHHh
Confidence            469999999999999999999999999999999987654322   2222344445555443

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=3.6e-12  Score=86.95  Aligned_cols=39  Identities=33%  Similarity=0.671  Sum_probs=35.5

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||+++++||||+|.||+++.++.+||+|||+|....
T Consensus       123 L~ylH~~~ivHrDiKp~NIll~~~~~~Kl~DFG~a~~~~  161 (288)
T d2jfla1         123 LNYLHDNKIIHRDLKAGNILFTLDGDIKLADFGVSAKNT  161 (288)
T ss_dssp             HHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECH
T ss_pred             HHHHHHCCEEEeecChhheeECCCCCEEEEechhhhccC
Confidence            468999999999999999999999999999999986543

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.12  E-value=5.9e-12  Score=87.97  Aligned_cols=57  Identities=25%  Similarity=0.334  Sum_probs=43.1

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++||||+|.||+++.++.++|+|||+|+......    . ...++..|++||.-
T Consensus       154 L~yLH~~~iiHRDIKP~NILl~~~g~ikL~DFG~a~~~~~~~----~-~~~Gt~~Y~APE~~  210 (350)
T d1rdqe_         154 FEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRT----W-TLCGTPEALAPEII  210 (350)
T ss_dssp             HHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECSSCB----C-CCEECGGGCCHHHH
T ss_pred             HHHHHhCCEecCcCCHHHcccCCCCCEEeeeceeeeeccccc----c-cccCccccCCHHHH
Confidence            468999999999999999999999999999999997654221    1 22334455555543

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=6.1e-12  Score=84.63  Aligned_cols=61  Identities=25%  Similarity=0.479  Sum_probs=36.5

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++||||+|.||+++..+.+|++|||+|+.......... ....++.+|+||+.-
T Consensus       121 l~ylH~~~iiHrDlKp~NIll~~~~~~Kl~DfG~a~~~~~~~~~~~-~~~~gt~~y~apE~l  181 (273)
T d1mp8a_         121 LAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKA-SKGKLPIKWMAPESI  181 (273)
T ss_dssp             HHHHHHTTCCCSCCSGGGEEEEETTEEEECC--------------------CCGGGCCHHHH
T ss_pred             hhhhcccCeeccccchhheeecCCCcEEEccchhheeccCCcceec-cceecCcccchhhHh
Confidence            4689999999999999999999999999999999986554333322 233456666766654

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=5.7e-12  Score=85.90  Aligned_cols=61  Identities=23%  Similarity=0.364  Sum_probs=39.8

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||..+++|+||+|.||+++.++.++|+|||+|+............. .++.+|++|+..
T Consensus       126 l~~LH~~~ivH~DlKp~NIll~~~~~~kl~DfGla~~~~~~~~~~~~~~-~gt~~y~aPE~~  186 (285)
T d1fmka3         126 MAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGA-KFPIKWTAPEAA  186 (285)
T ss_dssp             HHHHHHTTCCCSCCSGGGEEECGGGCEEECCCCTTC---------------CCGGGSCHHHH
T ss_pred             HHHHhhhheecccccceEEEECCCCcEEEcccchhhhccCCCceeeccc-cccccccChHHH
Confidence            4689999999999999999999999999999999976543333322222 345555555544

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=5e-12  Score=87.06  Aligned_cols=58  Identities=22%  Similarity=0.318  Sum_probs=42.3

Q ss_pred             Cccchh-CCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHA-RGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs-~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+ ++|+||||||.||+++.++.+||+|||+|+.......   . ...++.+|++||.-
T Consensus       117 L~yLH~~~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~~~---~-~~~GT~~Y~APEvl  175 (322)
T d1s9ja_         117 LTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMA---N-SFVGTRSYMSPERL  175 (322)
T ss_dssp             HHHHHHHHCCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHHTC-------CCSSCCCCHHHH
T ss_pred             HHHHHHhCCEEccccCHHHeeECCCCCEEEeeCCCccccCCCcc---c-cccCCccccCchHH
Confidence            468997 5999999999999999999999999999976543221   1 22345556666544

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=8e-12  Score=84.62  Aligned_cols=62  Identities=24%  Similarity=0.386  Sum_probs=44.3

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCC-CCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSY-TSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~-~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++||||+|.||+++.++.++++|||+|+........ .......++..|++||.-
T Consensus       120 l~ylH~~~iiHrDlKp~Nill~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~gt~~y~APE~l  182 (277)
T d1xbba_         120 MKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECI  182 (277)
T ss_dssp             HHHHHHTTEECSCCSGGGEEEEETTEEEECCCTTCEECCTTCSEEEC----CCCGGGCCHHHH
T ss_pred             HhhHHhCCcccCCCcchhhcccccCcccccchhhhhhccccccccccccccCCCceecCchhh
Confidence            46999999999999999999999999999999999765433222 222333455656666543

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=1.9e-11  Score=83.30  Aligned_cols=62  Identities=26%  Similarity=0.429  Sum_probs=47.9

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++||||+|.||+++.++.+||+|||+++...............++..|++|+.-
T Consensus       148 l~ylH~~~ivHrDiKp~NiLl~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~l  209 (299)
T d1fgka_         148 MEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEAL  209 (299)
T ss_dssp             HHHHHHTTCCCSCCSGGGEEECTTCCEEECSTTCCCCGGGCCTTCCCTTSCCGGGGSCHHHH
T ss_pred             HHHhhhCCEEeeeecccceeecCCCCeEeccchhhccccccccccccccCCCChhhhhhhHh
Confidence            46899999999999999999999999999999999876554444444444455556666543

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=2e-11  Score=82.46  Aligned_cols=39  Identities=44%  Similarity=0.795  Sum_probs=34.0

Q ss_pred             CccchhCC--ccccCCCCCceEEe-cCCcEEEeecccccccc
Q psy700            1 MGYLHARG--ILHKDLKSKNIFIE-KNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~--iihrdlk~~nill~-~~~~~kl~dfgla~~~~   39 (93)
                      |.|||+++  ++||||+|.||+++ .++.+||+|||+|+...
T Consensus       125 l~yLH~~~~~IiHrDiKp~NILl~~~~~~~Kl~DFGla~~~~  166 (270)
T d1t4ha_         125 LQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKR  166 (270)
T ss_dssp             HHHHHTSSSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCC
T ss_pred             HHHHHHCCCCEEeCCcChhhceeeCCCCCEEEeecCcceecc
Confidence            46899988  99999999999996 46789999999997543

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=1.9e-11  Score=82.32  Aligned_cols=58  Identities=24%  Similarity=0.251  Sum_probs=42.2

Q ss_pred             CccchhCCccccCCCCCceEEec-CCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEK-NNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~-~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++||||+|.||+++. .+.++|+|||+|.......    .....++.+|+|||.-
T Consensus       123 l~~lH~~~iiHrDiKp~NIll~~~~~~vkl~DFG~a~~~~~~~----~~~~~GT~~y~aPE~~  181 (273)
T d1xwsa_         123 VRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTV----YTDFDGTRVYSPPEWI  181 (273)
T ss_dssp             HHHHHHTTEECSCCSGGGEEEETTTTEEEECCCTTCEECCSSC----BCCCCSCGGGSCHHHH
T ss_pred             HHHHHHCCCccccCcccceEEecCCCeEEECccccceeccccc----ccccccCCCcCCHHHH
Confidence            46899999999999999999985 4689999999987544222    1223345556666543

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=1.3e-11  Score=83.39  Aligned_cols=64  Identities=27%  Similarity=0.473  Sum_probs=46.5

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCC-CCCCCCCCCCCCChhhhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSY-TSNEKPSSPLGEGKEEEEEK   64 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~-~~~~~~~~~~~~~p~e~~~~   64 (93)
                      |.|||+++++|+||+|.||+++.+..++|+|||+++........ ......+++.+|+||+....
T Consensus       124 l~ylH~~~iiHrDikp~NIll~~~~~vkl~DfGl~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~  188 (273)
T d1u46a_         124 MGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKT  188 (273)
T ss_dssp             HHHHHHTTEECSCCCGGGEEEEETTEEEECCCTTCEECCC-CCEEEC-----CCGGGCCHHHHHH
T ss_pred             HHHhhhCCEeeeeecHHHhccccccceeeccchhhhhcccCCCcceecCccccCcccCCHHHHhC
Confidence            46999999999999999999999999999999998865433322 23334456777777776543

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=2.6e-11  Score=82.38  Aligned_cols=59  Identities=24%  Similarity=0.388  Sum_probs=43.5

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEE   60 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e   60 (93)
                      |.|||+++++||||+|.||+++.+..++++|||+|+....... ......+++.+.+|+.
T Consensus       115 L~yLH~~~IiHrDiKpeNIl~~~~~~~kl~DFG~a~~~~~~~~-~~~~~~gt~~y~apE~  173 (298)
T d1gz8a_         115 LAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVR-TYTHEVVTLWYRAPEI  173 (298)
T ss_dssp             HHHHHHTTCCCSCCCGGGEEECTTSCEEECSTTHHHHHCCCSB-CTTCCBCCCTTCCHHH
T ss_pred             HHHhhcCCEEccccCchheeecccCcceeccCCcceeccCCcc-cceeecccceeeehhh
Confidence            4689999999999999999999999999999999976543332 2223334444444443

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=2.9e-11  Score=83.67  Aligned_cols=61  Identities=23%  Similarity=0.331  Sum_probs=45.1

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCC-CCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSY-TSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~-~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||+++++||||+|.||+++..+.++|+|||+|......... .......++..|.||+.
T Consensus       122 l~yLH~~~iiHRDIKp~NILl~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~gt~~y~aPE~  183 (345)
T d1pmea_         122 LKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEI  183 (345)
T ss_dssp             HHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECCGGGCBCCTTCCCCSCGGGCCGGG
T ss_pred             HHHHHHCCCcCCCCCcceEEECCCCCEEEcccCceeeccCCCccceeeccccccceechHHH
Confidence            46999999999999999999999999999999998765433322 12233344555555554

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.05  E-value=5.2e-11  Score=80.87  Aligned_cols=63  Identities=17%  Similarity=0.307  Sum_probs=43.3

Q ss_pred             CccchhCCccccCCCCCceEEec-----CCcEEEeeccccccccccCCC-----CCCCCCCCCCCCChhhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEK-----NNKVVITDFGLFNFSKLYNSY-----TSNEKPSSPLGEGKEEEEE   63 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~-----~~~~kl~dfgla~~~~~~~~~-----~~~~~~~~~~~~~p~e~~~   63 (93)
                      |.|||+++++||||+|.||+++.     ...++++|||+|+........     .......++..|++||.-.
T Consensus       114 l~~lH~~giiHrDiKp~Nili~~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~~~~~~GT~~y~aPE~~~  186 (293)
T d1csna_         114 VQSIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHL  186 (293)
T ss_dssp             HHHHHTTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHT
T ss_pred             HHHHHHCCceeccCCccceeecCcccccCCceEEcccceeEEcccCccccceeecccCceEEchhhcCHHHhc
Confidence            46899999999999999999964     457999999999865432211     1222333455555555543

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=1.5e-11  Score=83.03  Aligned_cols=60  Identities=27%  Similarity=0.387  Sum_probs=35.4

Q ss_pred             CccchhCC-----ccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARG-----ILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~-----iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++     ++||||+|.||+++.++.++|+|||+|+........  .....++.+|++||.-
T Consensus       122 l~ylH~~~~~~~~IiHrDiKp~NIll~~~~~vkl~DFG~a~~~~~~~~~--~~~~~gt~~Y~APE~l  186 (269)
T d2java1         122 LKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSF--AKAFVGTPYYMSPEQM  186 (269)
T ss_dssp             HHHHHHHCC---------CCGGGEEECTTSCEEECCHHHHHHC-------------CCCSCCCHHHH
T ss_pred             HHHHHHhcCCCCCEEeCcCchhhcCcCCCCcEEEeeccceeecccCCCc--cccCCCCcccCCHHHH
Confidence            46899865     999999999999999999999999999765432222  1223344556666543

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=5.1e-11  Score=82.57  Aligned_cols=60  Identities=22%  Similarity=0.305  Sum_probs=45.2

Q ss_pred             CccchhCCccccCCCCCceEEecCC-cEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNN-KVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~-~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++|+||||+|.||+++.++ .++|+|||++........  .....+++.+++||...
T Consensus       135 L~yLH~~~IiHrDiKp~NILl~~~~~~~kl~DFG~a~~~~~~~~--~~~~~gt~~y~aPE~~~  195 (350)
T d1q5ka_         135 LAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEP--NVSYICSRYYRAPELIF  195 (350)
T ss_dssp             HHHHHTTTEECCCCCGGGEEECTTTCCEEECCCTTCEECCTTSC--CCSCCSCTTSCCHHHHT
T ss_pred             HHHHHhcCCcccCCCcceEEEecCCCceeEecccchhhccCCcc--cccccccccccChHHhh
Confidence            4699999999999999999998664 789999999876543322  23345666777777644

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=4.3e-11  Score=80.26  Aligned_cols=62  Identities=26%  Similarity=0.374  Sum_probs=48.1

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEEE   63 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~~   63 (93)
                      |.|||..+++|++|++.||+++.++.+||+|||+++........ ......++.+|+|||.-.
T Consensus       113 l~~LH~~~iiH~dlk~~Nill~~~~~~kl~DfG~a~~~~~~~~~-~~~~~~~t~~y~aPE~~~  174 (258)
T d1k2pa_         113 MEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYT-SSVGSKFPVRWSPPEVLM  174 (258)
T ss_dssp             HHHHHHTTBCCSCCSGGGEEECTTCCEEECCCSSCCBCSSSSCC-CCCCSCCCGGGCCHHHHH
T ss_pred             HHHHhhcCcccccccceeEEEcCCCcEEECcchhheeccCCCce-eecccCCCCCcCCcHHhc
Confidence            46899999999999999999999999999999999765543332 333345667777777654

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=2e-11  Score=83.58  Aligned_cols=61  Identities=28%  Similarity=0.387  Sum_probs=44.6

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||.++++|+||++.||+++.+..+||+|||+|+...............++..|++|+.
T Consensus       146 l~~LH~~~ivHrDlk~~NiLld~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~t~~y~aPe~  206 (308)
T d1p4oa_         146 MAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPES  206 (308)
T ss_dssp             HHHHHHTTCBCSCCSGGGEEECTTCCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHH
T ss_pred             HHHHhhCCeeeceEcCCceeecCCceEEEeecccceeccCCcceeeccceecccccCCHHH
Confidence            4689999999999999999999999999999999986654433322222233444555543

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=4.1e-11  Score=82.65  Aligned_cols=62  Identities=26%  Similarity=0.300  Sum_probs=48.2

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|+|+.+++||||+|.||+++.++.++|+|||+++..............+.+.+++|+...
T Consensus       142 l~~lH~~~ivHrDiKp~Nill~~~~~vkL~DFG~a~~~~~~~~~~~~~~~g~~~~~~pe~~~  203 (322)
T d1vzoa_         142 LEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETERAYDFCGTIEYMAPDIVR  203 (322)
T ss_dssp             HHHHHHTTCCCCCCCGGGEEECTTSCEEESCSSEEEECCGGGGGGGCGGGSCCTTCCHHHHT
T ss_pred             HHHhhcCCEEeccCCccceeecCCCCEEEeeccchhhhcccccccccccccccccchhHHhh
Confidence            46899999999999999999999999999999999766544444344445566666666653

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=6.4e-11  Score=80.14  Aligned_cols=58  Identities=24%  Similarity=0.436  Sum_probs=43.1

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||+++++||||+|.||+++..+.++++|||++........   .....++..|+|||.
T Consensus       129 L~yLH~~~ivHrDiKp~NILi~~~~~~kl~dfg~~~~~~~~~~---~~~~~gT~~Y~APE~  186 (305)
T d1blxa_         129 LDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMA---LTSVVVTLWYRAPEV  186 (305)
T ss_dssp             HHHHHHTTCCCCCCCGGGEEECTTCCEEECSCCSCCCCCGGGG---GCCCCCCCTTCCHHH
T ss_pred             HHHHHhCCEEecCCCccEEEEcCCCCeeecchhhhhhhccccc---CCCcccChhhcCcch
Confidence            4699999999999999999999999999999999875433322   222334455555554

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=4.5e-11  Score=81.77  Aligned_cols=63  Identities=25%  Similarity=0.366  Sum_probs=48.2

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEEE   63 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~~   63 (93)
                      |.|||+++++||||+|.||+++..+.++++|||+++...............++..|++|+.-.
T Consensus       158 l~~LH~~~ivHrDLKp~NIl~~~~~~~ki~DfG~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~  220 (311)
T d1t46a_         158 MAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIF  220 (311)
T ss_dssp             HHHHHHTTCCCSCCSGGGEEEETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHH
T ss_pred             HHHHHhCCeeecccccccccccccCcccccccchheeccCCCcceEeeecccChHHcCHHHhc
Confidence            468999999999999999999999999999999998765444443344445566666666543

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=5.7e-11  Score=80.93  Aligned_cols=62  Identities=26%  Similarity=0.369  Sum_probs=44.3

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCC--CCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYT--SNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~--~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++||||+|.||+++.++.++++|||++..........  ......++.+|.||+.-
T Consensus       130 l~~lH~~~ivHrDlKp~NILl~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~gT~~Y~aPE~~  193 (318)
T d3blha1         130 LYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELL  193 (318)
T ss_dssp             HHHHHHTTEECCCCCGGGEEECTTSCEEECCCTTCEECCC-----CCCCCSCCSCGGGCCHHHH
T ss_pred             HHHhccCCEEecCcCchheeecCCCcEEeeecceeeecccccccccccccceecCHHHhhHHHH
Confidence            468999999999999999999999999999999987654333221  22223355666666654

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.99  E-value=9e-11  Score=79.40  Aligned_cols=62  Identities=23%  Similarity=0.384  Sum_probs=43.1

Q ss_pred             CccchhCCccccCCCCCceEEec---CCcEEEeeccccccccccCCC-----CCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEK---NNKVVITDFGLFNFSKLYNSY-----TSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~---~~~~kl~dfgla~~~~~~~~~-----~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++||||+|.||++..   ...++++|||+|+........     .......++..|++|+.-
T Consensus       116 l~~lH~~~iiHrDiKp~NIl~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  185 (299)
T d1ckia_         116 IEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTH  185 (299)
T ss_dssp             HHHHHHTTEECSCCCGGGEEECCGGGTTCEEECCCSSCEECBCTTTCCBCCCCBCCSCCCCSSSCCHHHH
T ss_pred             HHHHHHCCeeeccCCHhhccccccCCCceeeeeccCcceeccccccccceeccccCCcCCCccccCHHHH
Confidence            46899999999999999999753   456999999999865432221     122233455666666654

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=98.99  E-value=3.7e-11  Score=83.95  Aligned_cols=40  Identities=38%  Similarity=0.549  Sum_probs=34.9

Q ss_pred             CccchhCCccccCCCCCceEEe--cCCcEEEeeccccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIE--KNNKVVITDFGLFNFSKL   40 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~--~~~~~kl~dfgla~~~~~   40 (93)
                      |.|||+++++||||+|.||+++  ..+.++|+|||+|.....
T Consensus       140 L~ylH~~~iiHRDiKp~NILl~~~~~~~vkL~DFGla~~~~~  181 (352)
T d1koba_         140 LKHMHEHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNP  181 (352)
T ss_dssp             HHHHHHTTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCT
T ss_pred             HHHHHHCCeeecccccccccccccCCCeEEEeecccceecCC
Confidence            4699999999999999999997  457899999999976543

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=98.98  E-value=5.1e-11  Score=83.17  Aligned_cols=59  Identities=24%  Similarity=0.327  Sum_probs=42.4

Q ss_pred             CccchhCCccccCCCCCceEEec--CCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEK--NNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~--~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++||||+|.||+++.  ++.++|+|||+|+........   ....++.+|++||.-
T Consensus       137 L~ylH~~~iiHrDiKp~NIll~~~~~~~vkL~DFG~a~~~~~~~~~---~~~~gT~~Y~aPEv~  197 (350)
T d1koaa2         137 LCHMHENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSV---KVTTGTAEFAAPEVA  197 (350)
T ss_dssp             HHHHHHTTEECCCCCGGGEEESSTTSCCEEECCCTTCEECCTTSCE---EEECSCTTTCCHHHH
T ss_pred             HHHHHhcCCeeeeechhHeeeccCCCCeEEEeecchheeccccccc---ceecCcccccCHHHH
Confidence            46999999999999999999964  467999999998765433222   122345556666654

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=98.98  E-value=6.4e-11  Score=79.71  Aligned_cols=60  Identities=25%  Similarity=0.396  Sum_probs=41.7

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||+.+|+||||+|.||+++.++.++++|||+|....... .......+++.+++||..
T Consensus       113 L~~LH~~~IvHrDiKp~NIll~~~~~~kl~DfG~a~~~~~~~-~~~~~~~~~~~y~~pE~~  172 (286)
T d1ob3a_         113 IAYCHDRRVLHRDLKPQNLLINREGELKIADFGLARAFGIPV-RKYTHEIVTLWYRAPDVL  172 (286)
T ss_dssp             HHHHHHTTCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC----------CCCTTCCHHHH
T ss_pred             HHHhccCcEEecCCCCceeeEcCCCCEEecccccceecccCc-cccceecccchhhhHHHH
Confidence            468999999999999999999999999999999987654222 222222344555555544

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=1.4e-10  Score=79.63  Aligned_cols=63  Identities=21%  Similarity=0.286  Sum_probs=46.6

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCC--CCCCCCCCCCCChhhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYT--SNEKPSSPLGEGKEEEEE   63 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~--~~~~~~~~~~~~p~e~~~   63 (93)
                      |.|+|+.+++|+||++.||+++.+..++|+|||+++.........  ......++..|.+|+...
T Consensus       143 L~~lH~~~iiHrDLK~~NILl~~~~~~kL~DFG~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~  207 (311)
T d1r0pa_         143 MKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQ  207 (311)
T ss_dssp             HHHHHHTTCCCSCCSGGGEEECTTCCEEECSSGGGCCTTTTTCCCTTCTTCSSCCGGGSCHHHHH
T ss_pred             hhhhcccCcccCCccHHhEeECCCCCEEEecccchhhccccccccceecccccccccccChHHHh
Confidence            468999999999999999999999999999999998654333222  222334566666666543

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.96  E-value=7.5e-11  Score=80.90  Aligned_cols=59  Identities=31%  Similarity=0.495  Sum_probs=33.3

Q ss_pred             CccchhCCccccCCCCCceEEe---cCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIE---KNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~---~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++||||+|.||++.   .++.++|+|||+|+........  .. ..++..|++||.-
T Consensus       120 l~ylH~~~iiHrDiKp~Nil~~~~~~~~~vkl~DFG~a~~~~~~~~~--~~-~~GT~~y~APE~~  181 (307)
T d1a06a_         120 VKYLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVL--ST-ACGTPGYVAPEVL  181 (307)
T ss_dssp             HHHHHHTTCCCSCCCGGGEEESSSSTTCCEEECCC---------------------CTTSCHHHH
T ss_pred             HHhhhhceeeeEEecccceeecccCCCceEEEeccceeEEccCCCee--ee-eeeCccccCcHHH
Confidence            4689999999999999999995   3578999999999765432221  22 2334455555543

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=1.3e-10  Score=80.01  Aligned_cols=60  Identities=27%  Similarity=0.421  Sum_probs=44.2

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++||||+|.||+++..+.++|+|||+++........  .....++.+|++||..
T Consensus       116 l~ylH~~~iiHrDikp~NiL~~~~~~~kl~DFG~a~~~~~~~~~--~~~~~gt~~y~aPE~~  175 (320)
T d1xjda_         116 LQFLHSKGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAK--TNTFCGTPDYIAPEIL  175 (320)
T ss_dssp             HHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTCC--BCCCCSCGGGCCHHHH
T ss_pred             HHHHHhCCeeeccCcccceeecCCCceeccccchhhhccccccc--ccccCCCCCcCCHHHH
Confidence            46999999999999999999999999999999998754432222  2222344555555544

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=9.6e-11  Score=80.01  Aligned_cols=60  Identities=27%  Similarity=0.237  Sum_probs=41.6

Q ss_pred             cchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCC--CCCCCCCCCCCChhhhh
Q psy700            3 YLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYT--SNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         3 ~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~--~~~~~~~~~~~~p~e~~   62 (93)
                      |+|.++++|+||+|.||+++.++.+||+|||+++.........  ......++.+|++||.-
T Consensus       123 ~~~~~~IvHrDlKp~NILl~~~~~~Kl~DFGl~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  184 (303)
T d1vjya_         123 TQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVL  184 (303)
T ss_dssp             TTCBCEEECSCCCGGGEEECTTSCEEECCCTTCEEEETTTTEECC----CCSCGGGCCHHHH
T ss_pred             hccCCCeeccccCccceEEcCCCCeEEEecCccccccCCCcceeccccceecccCcCChhhc
Confidence            3445799999999999999999999999999987665433221  22233445666666653

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=98.94  E-value=1.5e-10  Score=79.21  Aligned_cols=39  Identities=36%  Similarity=0.801  Sum_probs=34.0

Q ss_pred             CccchhCCccccCCCCCceEEecCC-cEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNN-KVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~-~~kl~dfgla~~~~   39 (93)
                      |.|||+++|+||||+|.||+++... .++++|||+|....
T Consensus       142 L~~LH~~gIvHrDiKp~NILi~~~~~~vkl~DFG~a~~~~  181 (328)
T d3bqca1         142 LDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYH  181 (328)
T ss_dssp             HHHHHHTTEECCCCSGGGEEEETTTTEEEECCGGGCEECC
T ss_pred             HHHHhhcccccccccccceEEcCCCCeeeecccccceecc
Confidence            4699999999999999999998654 68999999987654

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=2.2e-10  Score=79.29  Aligned_cols=58  Identities=28%  Similarity=0.320  Sum_probs=41.4

Q ss_pred             CccchhCCccccCCCCCceEEec---CCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEK---NNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEE   61 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~---~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~   61 (93)
                      |.|||+++++||||+|.||+++.   .+.++|+|||+|+.......  .....+ +.+|++||.
T Consensus       124 l~ylH~~~iiHRDiKp~NIll~~~~~~~~~Kl~DFG~a~~~~~~~~--~~~~~g-t~~y~aPE~  184 (335)
T d2ozaa1         124 IQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNS--LTTPCY-TPYYVAPEV  184 (335)
T ss_dssp             HHHHHHTTEECCCCSGGGEEESCSSTTCCEEECCCTTCEECCCCCC--CCCCSC-CCSSCCCCC
T ss_pred             HHHHHHcCCccccccccccccccccccccccccccceeeeccCCCc--cccccC-CcccCCcHH
Confidence            46999999999999999999975   45699999999976543332  222334 444545544

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=1.9e-10  Score=77.03  Aligned_cols=60  Identities=25%  Similarity=0.435  Sum_probs=45.0

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||.++++||||+|.||++.....++++|||+|+.......  .......+.+++||+.-
T Consensus       114 L~~lH~~~IvHrDiKP~NIli~~~~~~kl~DFG~a~~~~~~~~--~~~~~~~~~~~~~pe~~  173 (292)
T d1unla_         114 LGFCHSRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIPVR--CYSAEVVTLWYRPPDVL  173 (292)
T ss_dssp             HHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSCCS--CCCSCCSCGGGCCHHHH
T ss_pred             HHHhhcCCEeeecccCcccccccCCceeeeecchhhcccCCCc--cceeeccccchhhhhHh
Confidence            4689999999999999999999999999999999876543322  22223345566666653

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.92  E-value=1.7e-10  Score=78.13  Aligned_cols=59  Identities=25%  Similarity=0.298  Sum_probs=43.7

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||.++++|+||+|.||+++.++.++|+|||+++.......  ... ..++..|.+|+.-
T Consensus       123 l~~lH~~~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~~~~--~~~-~~gt~~y~~PE~~  181 (277)
T d1phka_         123 ICALHKLNIVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGEK--LRE-VCGTPSYLAPEII  181 (277)
T ss_dssp             HHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECCTTCC--BCC-CCSCGGGCCHHHH
T ss_pred             HHHHHHcCCcccccccceEEEcCCCCeEEccchheeEccCCCc--eee-eeccCCCCCHHHh
Confidence            4689999999999999999999999999999999976543322  222 2334445555543

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=1.8e-10  Score=79.36  Aligned_cols=39  Identities=38%  Similarity=0.741  Sum_probs=35.7

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||+++++||||+|.||+++.++.++++|||+|+...
T Consensus       134 L~~LH~~~IiHrDiKp~NIL~~~~~~~kl~Dfg~a~~~~  172 (346)
T d1cm8a_         134 LRYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLARQAD  172 (346)
T ss_dssp             HHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECC
T ss_pred             HHHHHhCCCcccccCcchhhcccccccccccccceeccC
Confidence            468999999999999999999999999999999987654

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=2.3e-10  Score=78.11  Aligned_cols=59  Identities=29%  Similarity=0.433  Sum_probs=42.7

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|+|+++++||||+|.||+++.+..+||+|||+|+.......   .....++..|++|+.-
T Consensus       140 l~~lH~~~iiHrDlkp~NIL~~~~~~~kl~DfG~a~~~~~~~~---~~~~~gt~~y~aPE~l  198 (309)
T d1fvra_         140 MDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVK---KTMGRLPVRWMAIESL  198 (309)
T ss_dssp             HHHHHHTTEECSCCSGGGEEECGGGCEEECCTTCEESSCEECC---C----CCTTTCCHHHH
T ss_pred             HHhhhcCCccccccccceEEEcCCCceEEcccccccccccccc---ccceecCCcccchHHh
Confidence            4689999999999999999999999999999999875442222   2233445555655544

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.87  E-value=2.9e-10  Score=76.31  Aligned_cols=62  Identities=26%  Similarity=0.371  Sum_probs=39.1

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCC-CCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSY-TSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~-~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++||||+|.||+++.....+++|||++......... .......++..|++||.-
T Consensus       124 l~~lH~~~iiHrDiKP~NIll~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~  186 (277)
T d1o6ya_         124 LNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQA  186 (277)
T ss_dssp             HHHHHHTTEECCCCSGGGEEEETTSCEEECCCTTCEECC----------------TTCCHHHH
T ss_pred             HHHHHhCCccCccccCcccccCccccceeehhhhhhhhccccccccccccccCcccccCHHHH
Confidence            46899999999999999999999999999999987654322222 112222334455555543

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=3.7e-10  Score=76.46  Aligned_cols=59  Identities=31%  Similarity=0.352  Sum_probs=41.5

Q ss_pred             CccchhCCccccCCCCCceEEecCC----cEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNN----KVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~----~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++||||+|.||+++..+    .++++|||+|.........  .. ..++..|++||.-
T Consensus       126 l~yLH~~~ivHrDiKp~Nill~~~~~~~~~vkl~DfG~a~~~~~~~~~--~~-~~~t~~y~APE~~  188 (293)
T d1jksa_         126 VYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEF--KN-IFGTPEFVAPEIV  188 (293)
T ss_dssp             HHHHHHTTEECCCCSGGGEEESCSSSSSCCEEECCCTTCEECTTSCBC--SC-CCCCGGGCCHHHH
T ss_pred             HHhhhhcceeecccccceEEEecCCCcccceEecchhhhhhcCCCccc--cc-cCCCCcccCHHHH
Confidence            4689999999999999999997654    4899999998765433222  22 2334445555543

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=7.9e-10  Score=76.01  Aligned_cols=39  Identities=28%  Similarity=0.516  Sum_probs=33.5

Q ss_pred             CccchhCCccccCCCCCceEEecC--CcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKN--NKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~--~~~kl~dfgla~~~~   39 (93)
                      |.|||+.+++||||+|.||+++..  ..++++|||+++...
T Consensus       115 l~yLH~~~iiHrDlKp~NIll~~~~~~~ikl~DFG~~~~~~  155 (321)
T d1tkia_         115 LQFLHSHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLK  155 (321)
T ss_dssp             HHHHHHTTEECCCCCGGGEEESSSSCCCEEECCCTTCEECC
T ss_pred             HHHHHHcCCCcccccccceeecCCCceEEEEcccchhhccc
Confidence            469999999999999999999743  478999999987653

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=7.9e-10  Score=75.86  Aligned_cols=58  Identities=24%  Similarity=0.365  Sum_probs=39.9

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccccCCCCCCCCCCCCCCCChhhhh
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKLYNSYTSNEKPSSPLGEGKEEEE   62 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~~~~~~~~~~~~~~~~~~p~e~~   62 (93)
                      |.|||+++++||||+|.||+++.++.++++|||++.......    ....+++.+++|+...
T Consensus       134 L~~LH~~giiHrDiKp~NILi~~~~~~kl~dfg~a~~~~~~~----~~~~g~~~y~apE~~~  191 (348)
T d2gfsa1         134 LKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEM----TGYVATRWYRAPEIML  191 (348)
T ss_dssp             HHHHHHTTCCCCCCCGGGEEECTTCCEEECCC----CCTGGG----SSSCHHHHTSCHHHHT
T ss_pred             HHHHHhCCCcccccCCccccccccccccccccchhcccCccc----ccccccccccCchhhc
Confidence            468999999999999999999999999999999986543222    2223445555555433

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=2.8e-09  Score=71.44  Aligned_cols=39  Identities=31%  Similarity=0.679  Sum_probs=32.5

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      |.|||+.+++|++|+|.||+++.++.++++|||+++...
T Consensus       116 l~ylH~~~ivH~dlkp~Nil~~~~~~~kl~dfg~s~~~~  154 (262)
T d1byga_         116 MEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEAS  154 (262)
T ss_dssp             HHHHHHTTCCCSCCSGGGEEECTTSCEEECCCCC-----
T ss_pred             ccccccCceeccccchHhheecCCCCEeecccccceecC
Confidence            468999999999999999999999999999999987543

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.62  E-value=5.1e-09  Score=66.58  Aligned_cols=37  Identities=27%  Similarity=0.394  Sum_probs=31.7

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      |.|||.++++|+|++|.||+++.. .++++|||+|...
T Consensus       116 l~~lH~~giiHrDiKP~NILv~~~-~~~liDFG~a~~~  152 (191)
T d1zara2         116 VAKFYHRGIVHGDLSQYNVLVSEE-GIWIIDFPQSVEV  152 (191)
T ss_dssp             HHHHHHTTEECSCCSTTSEEEETT-EEEECCCTTCEET
T ss_pred             HHHHhhCCEEEccCChhheeeeCC-CEEEEECCCcccC
Confidence            468999999999999999999854 5889999987543

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=8.2e-09  Score=71.34  Aligned_cols=40  Identities=38%  Similarity=0.639  Sum_probs=32.3

Q ss_pred             CccchhCCccccCCCCCceEEecCCcEEEeeccccccccc
Q psy700            1 MGYLHARGILHKDLKSKNIFIEKNNKVVITDFGLFNFSKL   40 (93)
Q Consensus         1 l~~lhs~~iihrdlk~~nill~~~~~~kl~dfgla~~~~~   40 (93)
                      |.|||++|++|+||+|.||++..++.++++|||+++....
T Consensus       132 l~~LH~~giiHrDlKP~Nil~~~~~~~kl~df~~~~~~~~  171 (355)
T d2b1pa1         132 IKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGT  171 (355)
T ss_dssp             HHHHHHTTCCCSCCCGGGEEECTTCCEEECCCCC------
T ss_pred             HHHhhhcccccccCCccccccccccceeeechhhhhcccc
Confidence            4689999999999999999999999999999999765543

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.42  E-value=2.7e-08  Score=68.06  Aligned_cols=39  Identities=31%  Similarity=0.661  Sum_probs=31.8

Q ss_pred             Cccchh-CCccccCCCCCceEEecCC------cEEEeecccccccc
Q psy700            1 MGYLHA-RGILHKDLKSKNIFIEKNN------KVVITDFGLFNFSK   39 (93)
Q Consensus         1 l~~lhs-~~iihrdlk~~nill~~~~------~~kl~dfgla~~~~   39 (93)
                      |.|||+ .+|+||||+|.||++...+      .++++|||.+....
T Consensus       138 l~~lh~~~~IvHrDlKp~NIll~~~~~~~~~~~~kl~dfg~s~~~~  183 (362)
T d1q8ya_         138 LDYMHRRCGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYD  183 (362)
T ss_dssp             HHHHHHTTCEECSCCSGGGEEEEEEETTTTEEEEEECCCTTCEETT
T ss_pred             HHHHhhhcCcccccCChhHeeeeccCcccccceeeEeecccccccc
Confidence            358897 8899999999999997543      37999999986543

>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Homoserine kinase ThrB
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=93.08  E-value=0.014  Score=38.22  Aligned_cols=32  Identities=25%  Similarity=0.381  Sum_probs=27.5

Q ss_pred             CCccccCCCCCceEEecCCcEEEeeccccccc
Q psy700            7 RGILHKDLKSKNIFIEKNNKVVITDFGLFNFS   38 (93)
Q Consensus         7 ~~iihrdlk~~nill~~~~~~kl~dfgla~~~   38 (93)
                      .++||.|+.+.|++++.+....++||+.+...
T Consensus       183 ~giIHgDl~~dNvl~~~~~v~gvIDF~~~~~~  214 (316)
T d2ppqa1         183 AGVIHADLFQDNVFFLGDELSGLIDFYFACND  214 (316)
T ss_dssp             EEEECSCCCGGGEEEETTEEEEECCCTTCEEE
T ss_pred             cccccCCcchhhhhcccccceeEecccccccc
Confidence            57999999999999998776789999987643

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=92.53  E-value=0.03  Score=35.24  Aligned_cols=32  Identities=25%  Similarity=0.324  Sum_probs=26.5

Q ss_pred             CccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            8 GILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         8 ~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      .++|.|+.+.||++.....+.++||..+.+..
T Consensus       184 ~l~HgD~~~~Nil~~~~~~~~lIDwe~a~~g~  215 (263)
T d1j7la_         184 VFSHGDLGDSNIFVKDGKVSGFIDLGRSGRAD  215 (263)
T ss_dssp             EEECSCCCTTSEEEETTEEEEECCCTTCEEEE
T ss_pred             EEEEeeccCcceeecCCceEEEeechhcccCC
Confidence            47999999999999876666799999876654

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=91.92  E-value=0.033  Score=34.87  Aligned_cols=32  Identities=22%  Similarity=0.254  Sum_probs=26.5

Q ss_pred             CccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            8 GILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         8 ~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      .++|+|+.+.||++.....+.++||+.+.+..
T Consensus       176 ~liHgD~~~~Nvl~~~~~~~~iID~~~~~~g~  207 (255)
T d1nd4a_         176 VVTHGDACLPNIMVENGRFSGFIDCGRLGVAD  207 (255)
T ss_dssp             EEECSSCCGGGEEEETTEEEEECCCTTCEEEE
T ss_pred             eEEeCCCCCcceEEeCCceEEEEEchhcccCC
Confidence            47999999999999876667799999876544

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=85.37  E-value=0.19  Score=34.01  Aligned_cols=31  Identities=19%  Similarity=0.389  Sum_probs=25.7

Q ss_pred             CccccCCCCCceEEecCCcEEEeecccccccc
Q psy700            8 GILHKDLKSKNIFIEKNNKVVITDFGLFNFSK   39 (93)
Q Consensus         8 ~iihrdlk~~nill~~~~~~kl~dfgla~~~~   39 (93)
                      .++|+|+.+.||+++.+. ++++||-++.+.+
T Consensus       224 ~LiHGDl~~gNIlv~~~~-~~vID~E~a~~G~  254 (392)
T d2pula1         224 TLIHGDLHTGSIFASEHE-TKVIDPEFAFYGP  254 (392)
T ss_dssp             EEECSCCCGGGEEECSSC-EEECCCTTCEEEC
T ss_pred             ceeccCCcCCceeEcCCc-eEEechhhcccCC
Confidence            589999999999997654 7899998876554