Psyllid ID: psy7114

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130----
Protein Sequence
MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQQTHMNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEITAR
Secondary Structure (PSIPRED)
ccEEEEEcccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEEEccccccEEEEccccccccccccEEEEccccEEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccHHHHccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccccccccccccccccccccccccHHHHHHccccccccEEcccccccccccccEEEEccccEEEEEEEcc
Coil and Loop (DISEMBL)
MNHFEILNCNVNSTLEEIKENYKSLILKyhpdknseHQEMFLKINEAWNILKDEKERKLYESQLLSQQQTHMNiyksvslsdmehkgesqmftypcrcgaefcieeqdtegdgsddniliACDTCSLLLEITAR
Flexible Loop (DISEMBL)
mnhfeilncnvNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQQTHMNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEgdgsddniliACDTCSLLLEITAR
Low Complexity Region (SEG)
MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQQTHMNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEITAR
Disordered region (IsUnstruct)
***FEILNCNVNSTLEEIKENYKSLILKYHPD****HQEMFLKINEAWNILKD********************IY**************QMFTYPCRCGAEFCIEEQD*****SDDNILIACDTCSLLLEI***
Disordered Region (DISOPRED)
MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYES****************SLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEITAR
Disordered Region (DISEMBL)
MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQQTHMNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEITAR
Disordered Region (DISPRO)
MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQQTHMNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEITAR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQQTHMNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEITAR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	134	2.2.26 [Sep-21-2011]
Q54CI5	170	DPH4 homolog OS=Dictyoste	yes	N/A	0.940	0.741	0.329	4e-16
Q0VBY7	148	DnaJ homolog subfamily C	yes	N/A	0.932	0.844	0.3	7e-14
Q91ZF0	196	DnaJ homolog subfamily C	yes	N/A	0.932	0.637	0.292	3e-13
Q6P3W2	148	DnaJ homolog subfamily C	yes	N/A	0.932	0.844	0.292	2e-12
Q9UUG3	139	Diphthamide biosynthesis	yes	N/A	0.917	0.884	0.326	2e-12
Q7M9T3	374	Chaperone protein DnaJ OS	yes	N/A	0.455	0.163	0.437	1e-10
P63036	397	DnaJ homolog subfamily A	no	N/A	0.664	0.224	0.336	2e-10
P63037	397	DnaJ homolog subfamily A	no	N/A	0.664	0.224	0.336	2e-10
Q5E954	397	DnaJ homolog subfamily A	no	N/A	0.664	0.224	0.336	2e-10
Q95JF4	397	DnaJ homolog subfamily A	N/A	N/A	0.664	0.224	0.336	2e-10

>sp|Q54CI5|DPH4_DICDI DPH4 homolog OS=Dictyostelium discoideum GN=dph4 PE=3 SV=1

 Score = 83.2 bits (204), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 81/155 (52%), Gaps = 29/155 (18%)

Query: 2   NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEM--------------------- 40
           N++EIL  ++++ +EEIK++Y+ L L YHPDK ++ + +                     
Sbjct: 15  NYYEILKVSIDADIEEIKKSYRKLALLYHPDKLNKEENIEENINNFSNCLVNNNNNNNNS 74

Query: 41  ----FLKINEAWNILKDEKERKLYESQLLSQQQTHMNIYKSVSLSDMEHKGESQMFTYPC 96
               F  I  AW  LKD+  RK Y+S LL Q++   ++   + L DME   E+  + YPC
Sbjct: 75  NTKDFNDIQIAWETLKDDLLRKQYDSLLLEQKRQKYSVSDEIDLDDMEFIEENSEYVYPC 134

Query: 97  RCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEI 131
           RCG  + I E D   +GSD   ++ C  CSL +++
Sbjct: 135 RCGDHYIITE-DQLSEGSD---VVCCSGCSLSIKV 165

Stimulates the ATPase activity of several Hsp70-type chaperones.
Dictyostelium discoideum (taxid: 44689)

>sp|Q0VBY7|DJC24_BOVIN DnaJ homolog subfamily C member 24 OS=Bos taurus GN=DNAJC24 PE=2 SV=2

 Score = 75.9 bits (185), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 79/140 (56%), Gaps = 15/140 (10%)

Query: 2   NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNS---------EHQEMFLKINEAWNILK 52
           + + IL  + ++++ ++K+ Y+ LIL YHPDK S         E  + F++I++AW IL 
Sbjct: 10  DWYSILGADPSASVSDLKQKYQKLILMYHPDKQSADAPAGSVEECIQKFIEIDQAWKILG 69

Query: 53  DEKERKLYESQLLSQQQTHMN-IYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEG 111
           +E+ +K Y+ Q       +M  +   + L +M    +   F+  CRCG ++ + +     
Sbjct: 70  NEETKKEYDLQRHEDDLRNMGPVDARIYLEEMSWNEDDHSFSLSCRCGGKYSVSK----- 124

Query: 112 DGSDDNILIACDTCSLLLEI 131
           D +++  LI+CDTCSL++E+
Sbjct: 125 DEAEEVTLISCDTCSLIIEL 144

Stimulates the ATPase activity of several Hsp70-type chaperones.

Bos taurus (taxid: 9913)

>sp|Q91ZF0|DJC24_MOUSE DnaJ homolog subfamily C member 24 OS=Mus musculus GN=Dnajc24 PE=1 SV=3

 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 76/140 (54%), Gaps = 15/140 (10%)

Query: 2   NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNS---------EHQEMFLKINEAWNILK 52
           + + IL  + ++ + ++K+ Y+ LIL YHPDK S         E  + F++I++AW IL 
Sbjct: 58  DWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILG 117

Query: 53  DEKERKLYESQLLSQQQTHMN-IYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEG 111
           +E+ +K Y+ Q    +  ++  +   V L +M      + F   CRCG ++ + +     
Sbjct: 118 NEETKKKYDLQRHEDELRNVGPVDAQVRLEEMSWNQGDESFFLSCRCGGKYTVSK----- 172

Query: 112 DGSDDNILIACDTCSLLLEI 131
           D + +  LI+CD CSL++E+
Sbjct: 173 DEAQEATLISCDACSLIVEL 192

Stimulates the ATPase activity of several Hsp70-type chaperones.

Mus musculus (taxid: 10090)

>sp|Q6P3W2|DJC24_HUMAN DnaJ homolog subfamily C member 24 OS=Homo sapiens GN=DNAJC24 PE=1 SV=1

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 76/140 (54%), Gaps = 15/140 (10%)

Query: 2   NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNS---------EHQEMFLKINEAWNILK 52
           + + IL  + ++ + ++K+ Y+ LIL YHPDK S         E  + F++I++AW IL 
Sbjct: 10  DWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILG 69

Query: 53  DEKERKLYESQLLSQQQTHMN-IYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEG 111
           +E+ ++ Y+ Q       ++  +   V L +M        F   CRCG ++ + +     
Sbjct: 70  NEETKREYDLQRCEDDLRNVGPVDAQVYLEEMSWNEGDHSFYLSCRCGGKYSVSK----- 124

Query: 112 DGSDDNILIACDTCSLLLEI 131
           D +++  LI+CDTCSL++E+
Sbjct: 125 DEAEEVSLISCDTCSLIIEL 144

Stimulates the ATPase activity of several Hsp70-type chaperones.

Homo sapiens (taxid: 9606)

>sp|Q9UUG3|DPH4_SCHPO Diphthamide biosynthesis protein 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dph4 PE=3 SV=1

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 75/138 (54%), Gaps = 15/138 (10%)

Query: 1   MNHFEILNCNVNSTL--EEIKENYKSLILKYHPDKNSEHQEMFLKIN---EAWNILKDEK 55
           MNH+ +LN     T   +EIKE Y+  +L +HPDK  E   +   I+   EA+ +L  EK
Sbjct: 1   MNHYSVLNLKDGKTYTDDEIKEAYRKALLLFHPDKCKEKPSVVYTIDQVKEAYQVLSSEK 60

Query: 56  ERKLYESQLLSQQQTHMNIYKSVSLSDMEHKGESQMFTYPCRCG--AEFCIEEQDTEGDG 113
           +R+ Y+   + Q++   + Y  V LS+ E + ++  + YPCRCG    + + E D E + 
Sbjct: 61  DRQQYQ---IKQEEESSHYYSIVDLSEFE-ELDNGSYYYPCRCGDLGGYVVTEDDLENNR 116

Query: 114 SDDNILIACDTCSLLLEI 131
           S    ++ C  CSL +++
Sbjct: 117 S----VVPCMGCSLTIQV 130

Required for the first step of diphthamide biosynthesis, the transfer of 3-amino-3-carboxypropyl from S-adenosyl-L-methionine to a histidine residue. Diphthamide is a post-translational modification of histidine which occurs in elongation factor 2.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q7M9T3|DNAJ_WOLSU Chaperone protein DnaJ OS=Wolinella succinogenes (strain ATCC 29543 / DSM 1740 / LMG 7466 / NCTC 11488 / FDC 602W) GN=dnaJ PE=3 SV=1

 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 47/64 (73%), Gaps = 3/64 (4%)

Query: 1  MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKN---SEHQEMFLKINEAWNILKDEKER 57
           +++EIL    +++ EEIK+ Y+ + +KYHPD+N   SE +EMF ++NEA+ +L DE +R
Sbjct: 4  FDYYEILEIERSASGEEIKKAYRKMAMKYHPDRNEGSSEAEEMFKRVNEAYQVLSDEGKR 63

Query: 58 KLYE 61
          +LY+
Sbjct: 64 QLYD 67

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Wolinella succinogenes (taxid: 844)

>sp|P63036|DNJA1_RAT DnaJ homolog subfamily A member 1 OS=Rattus norvegicus GN=Dnaja1 PE=2 SV=1

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 3/92 (3%)

Query: 3  HFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYES 62
          ++++L    N+T EE+K+ Y+ L LKYHPDKN    E F +I++A+ +L D K+R+LY+ 
Sbjct: 7  YYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLADSKKRELYDK 66

Query: 63 ---QLLSQQQTHMNIYKSVSLSDMEHKGESQM 91
             Q + +          + + DM   G  +M
Sbjct: 67 GGEQAIKEGGAGGGFGSPMDIFDMFFGGGGRM 98

Co-chaperone of Hsc70. Seems to play a role in protein import into mitochondria.

Rattus norvegicus (taxid: 10116)

>sp|P63037|DNJA1_MOUSE DnaJ homolog subfamily A member 1 OS=Mus musculus GN=Dnaja1 PE=1 SV=1

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 3/92 (3%)

Query: 3  HFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYES 62
          ++++L    N+T EE+K+ Y+ L LKYHPDKN    E F +I++A+ +L D K+R+LY+ 
Sbjct: 7  YYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLADSKKRELYDK 66

Query: 63 ---QLLSQQQTHMNIYKSVSLSDMEHKGESQM 91
             Q + +          + + DM   G  +M
Sbjct: 67 GGEQAIKEGGAGGGFGSPMDIFDMFFGGGGRM 98

Co-chaperone of Hsc70. Seems to play a role in protein import into mitochondria.

Mus musculus (taxid: 10090)

>sp|Q5E954|DNJA1_BOVIN DnaJ homolog subfamily A member 1 OS=Bos taurus GN=DNAJA1 PE=2 SV=2

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 3/92 (3%)

Query: 3  HFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYES 62
          ++++L    N+T EE+K+ Y+ L LKYHPDKN    E F +I++A+ +L D K+R+LY+ 
Sbjct: 7  YYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYDK 66

Query: 63 ---QLLSQQQTHMNIYKSVSLSDMEHKGESQM 91
             Q + +          + + DM   G  +M
Sbjct: 67 GGEQAIKEGGAGGGFGSPMDIFDMFFGGGGRM 98

Co-chaperone of Hsc70. Seems to play a role in protein import into mitochondria.

Bos taurus (taxid: 9913)

>sp|Q95JF4|DNAJ1_CHLAE DnaJ homolog subfamily A member 1 OS=Chlorocebus aethiops GN=DNAJA1 PE=2 SV=1

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 3/92 (3%)

Query: 3  HFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYES 62
          ++++L    N+T EE+K+ Y+ L LKYHPDKN    E F +I++A+ +L D K+R+LY+ 
Sbjct: 7  YYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYDK 66

Query: 63 ---QLLSQQQTHMNIYKSVSLSDMEHKGESQM 91
             Q + +          + + DM   G  +M
Sbjct: 67 GGEQAIKEGGAGGGFGSPMDIFDMFFGGGGRM 98

Co-chaperone of Hsc70. Seems to play a role in protein import into mitochondria.

Chlorocebus aethiops (taxid: 9534)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	134
157112326	157	hypothetical protein AaeL_AAEL000936 [Ae	0.970	0.828	0.306	1e-18
330845463	141	hypothetical protein DICPUDRAFT_13347 [D	0.940	0.893	0.366	5e-18
281211055	142	DNAJ heat shock N-terminal domain-contai	0.947	0.894	0.381	7e-18
330840953	157	hypothetical protein DICPUDRAFT_83095 [D	0.932	0.796	0.368	2e-17
170066895	150	zinc finger [Culex quinquefasciatus] gi|	0.962	0.86	0.288	2e-17
312372810	138	hypothetical protein AND_30094 [Anophele	0.940	0.913	0.314	3e-17
384251044	160	DnaJ-domain-containing protein [Coccomyx	0.962	0.806	0.326	2e-16
195111767	197	GI22522 [Drosophila mojavensis] gi|19391	0.955	0.649	0.322	3e-16
284447355	145	DnaJ (Hsp40) homolog, subfamily C, membe	0.932	0.862	0.335	5e-16
334331629	148	PREDICTED: dnaJ homolog subfamily C memb	0.940	0.851	0.333	6e-16

>gi|157112326|ref|XP_001657497.1| hypothetical protein AaeL_AAEL000936 [Aedes aegypti] gi|108883770|gb|EAT47995.1| AAEL000936-PA [Aedes aegypti]

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 90/147 (61%), Gaps = 17/147 (11%)

Query: 1   MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK------------NSEHQEMFLKINEAW 48
           M+H++ILN   ++TL+EI+ +Y+ L L++HPDK            ++   + F++I+EAW
Sbjct: 15  MSHYQILNVAPDATLDEIRRSYQLLALRFHPDKLSLQNCSIAQEESAASADQFIRIDEAW 74

Query: 49  NILKDEKERKLYESQLLSQQ-QTHMNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQ 107
            +L+DE+ R++Y+++L+ +  +    + + +  +D  H+ E   + + CRCG  + +   
Sbjct: 75  KVLRDEEARRVYDAELMQRTCREEYFVNEVLRRADFRHEQEEDYYYHTCRCGGLYVL--- 131

Query: 108 DTEGDGSDDNILIACDTCSLLLEITAR 134
             E  G+D++  IACD CSL++++ A+
Sbjct: 132 -PENLGADESCYIACDECSLVVQVNAK 157

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|330845463|ref|XP_003294604.1| hypothetical protein DICPUDRAFT_13347 [Dictyostelium purpureum] gi|325074900|gb|EGC28867.1| hypothetical protein DICPUDRAFT_13347 [Dictyostelium purpureum]

 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 52/142 (36%), Positives = 83/142 (58%), Gaps = 16/142 (11%)

Query: 2   NHFEILNCNVNSTLEEIKENYKSLILKYHPDK-NSEHQEM-----------FLKINEAWN 49
           N++E L  ++++  EEIK++Y+ L+L YHPDK +++H              F +I ++W 
Sbjct: 2   NYYETLKVSIDAPYEEIKKSYRKLVLLYHPDKISNDHSSFNSDSGNVANKEFNEIQKSWE 61

Query: 50  ILKDEKERKLYESQLLSQQQTHMNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDT 109
            LKD+  RK Y++ LL QQ+   ++   V L DME+  E   +TYPCRCG ++ I    T
Sbjct: 62  TLKDDALRKQYDALLLEQQRQKYSVSDEVDLDDMEYLEEEGQYTYPCRCGDQYII----T 117

Query: 110 EGDGSDDNILIACDTCSLLLEI 131
           E   S+ N ++ C  CSL ++I
Sbjct: 118 EDQLSEGNDVVCCSGCSLSIKI 139

Source: Dictyostelium purpureum

Species: Dictyostelium purpureum

Genus: Dictyostelium

Order: Dictyosteliida

Superkingdom: Eukaryota

>gi|281211055|gb|EFA85221.1| DNAJ heat shock N-terminal domain-containing protein [Polysphondylium pallidum PN500]

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 53/139 (38%), Positives = 81/139 (58%), Gaps = 12/139 (8%)

Query: 1   MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKN--SEHQ------EMFLKINEAWNILK 52
           MNH+EIL   VN+  ++IK+ + S +L YHPDK   SE Q      +MF KI +AW  L+
Sbjct: 1   MNHYEILGIEVNADYKDIKKAFSSKVLLYHPDKLVLSEQQHDVVDIDMFQKIQQAWECLR 60

Query: 53  DEKERKLYESQLLSQQQTHMNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGD 112
           D + R  Y++ LL  Q+   +I   V L DME+  +   F+YPCRC  ++ I+E   E +
Sbjct: 61  DPENRSKYDAYLLENQRQKYSISDEVDLDDMEYNEDLSQFSYPCRCNGQYTIDESQLE-N 119

Query: 113 GSDDNILIACDTCSLLLEI 131
           G +   + +C  CSL +++
Sbjct: 120 GEE---IASCQNCSLTIKV 135

Source: Polysphondylium pallidum PN500

Species: Polysphondylium pallidum

Genus: Polysphondylium

Order: Dictyosteliida

Superkingdom: Eukaryota

>gi|330840953|ref|XP_003292471.1| hypothetical protein DICPUDRAFT_83095 [Dictyostelium purpureum] gi|325077278|gb|EGC31001.1| hypothetical protein DICPUDRAFT_83095 [Dictyostelium purpureum]

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/141 (36%), Positives = 81/141 (57%), Gaps = 16/141 (11%)

Query: 3   HFEILNCNVNSTLEEIKENYKSLILKYHPDKNS-EHQEM-----------FLKINEAWNI 50
           ++E L  ++++  EEIK++Y+ L+L YHPDK S +H              F +I ++W  
Sbjct: 15  YYETLKVSIDAPYEEIKKSYRKLVLLYHPDKISNDHSSFNSDSGNVANKEFNEIQKSWET 74

Query: 51  LKDEKERKLYESQLLSQQQTHMNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTE 110
           LKD+  RK Y++ LL QQ+   ++   V L DME+  E   +TYPCRCG ++ I    TE
Sbjct: 75  LKDDALRKQYDALLLEQQRQKYSVSDEVDLDDMEYLEEEGQYTYPCRCGDQYII----TE 130

Query: 111 GDGSDDNILIACDTCSLLLEI 131
              S+ N ++ C  CSL ++I
Sbjct: 131 DQLSEGNDVVCCSGCSLSIKI 151

Source: Dictyostelium purpureum

Species: Dictyostelium purpureum

Genus: Dictyostelium

Order: Dictyosteliida

Superkingdom: Eukaryota

>gi|170066895|ref|XP_001868266.1| zinc finger [Culex quinquefasciatus] gi|167863074|gb|EDS26457.1| zinc finger [Culex quinquefasciatus]

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 87/142 (61%), Gaps = 13/142 (9%)

Query: 2   NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQ--------EMFLKINEAWNILKD 53
           +H ++LN   N++ +EI+  Y++L L++HPDK   H         + F++I+EAW +L+D
Sbjct: 13  SHLQVLNVAQNASFDEIRRAYQALALRFHPDKRLSHPAPEEPNSNDSFIRIDEAWKVLRD 72

Query: 54  EKERKLYESQLL-SQQQTHMNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGD 112
           ++ R++Y+++L+ S  +    + ++++ ++  H+ E   + + CRCG  + +     +G 
Sbjct: 73  DQARRVYDAELMQSTCREEYFVNETLTRAEFRHEEEEGYYYHTCRCGGLYVL----PDGL 128

Query: 113 GSDDNILIACDTCSLLLEITAR 134
           G D++  I CD CSL++++ A+
Sbjct: 129 GPDESCYIGCDECSLVVQVNAK 150

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312372810|gb|EFR20688.1| hypothetical protein AND_30094 [Anopheles darlingi]

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 85/140 (60%), Gaps = 14/140 (10%)

Query: 1   MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKN--------SEHQEMFLKINEAWNILK 52
           M+H+E+L    ++T EEI+++Y++L L+YHPDK             E F++I+EAW +L+
Sbjct: 1   MSHYEVLQVPADATTEEIRKSYQTLALQYHPDKRKGGNDGTKGSETENFVRIDEAWKVLR 60

Query: 53  DEKERKLYESQLLSQQ-QTHMNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEG 111
           DE++R++Y+++L+ Q  Q    + ++++L D E   E    ++ CRCG  + + ++    
Sbjct: 61  DEQKRRVYDAELMQQSCQEEYFVNETLTLEDFEKHEEEDYRSHVCRCGGFYILPDEPI-- 118

Query: 112 DGSDDNILIACDTCSLLLEI 131
               + I + CD CSL++++
Sbjct: 119 ---TEKIYVCCDECSLVVQV 135

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|384251044|gb|EIE24522.1| DnaJ-domain-containing protein [Coccomyxa subellipsoidea C-169]

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 74/144 (51%), Gaps = 15/144 (10%)

Query: 1   MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKNS--------EHQEMFLKINEAWNILK 52
           MNH+E L+   +++ E I+  Y++ +L+ HPDK +        +    FL++ +AW +LK
Sbjct: 9   MNHYEALDVASDASQESIRTAYRAAVLRLHPDKVASQTGQKDWQRTAEFLRVQQAWEVLK 68

Query: 53  DEKERKLYESQLLSQQ-QTHMNIYKSVSLSDMEHKGESQM----FTYPCRCGAEFCIEEQ 107
           D   R  Y   L++Q  Q  + +   V L DM       +    FTYPCRCG+ F + E 
Sbjct: 69  DTHRRAAYNQLLVAQALQKELAVSAEVDLDDMLCHDNPIVALCTFTYPCRCGSSFTLSEA 128

Query: 108 DTEGDGSDDNILIACDTCSLLLEI 131
           D   D   D+ L+ C  CSL + +
Sbjct: 129 DLSEDS--DSALVQCQNCSLAIRV 150

Source: Coccomyxa subellipsoidea C-169

Species: Coccomyxa subellipsoidea

Genus: Coccomyxa

Family: Coccomyxaceae

Class: Trebouxiophyceae

Phylum: Chlorophyta

Superkingdom: Eukaryota

>gi|195111767|ref|XP_002000449.1| GI22522 [Drosophila mojavensis] gi|193917043|gb|EDW15910.1| GI22522 [Drosophila mojavensis]

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/186 (32%), Positives = 85/186 (45%), Gaps = 58/186 (31%)

Query: 1   MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK------------------NSEHQEMFL 42
           +N +E+LN N  +T EE+K NYK LIL+ HPDK                  N E    F 
Sbjct: 4   LNFYELLNANATATFEELKRNYKQLILQCHPDKLQQQQTVAVTVTANESDPNRESDNNFN 63

Query: 43  KINEAWNILKDEKERKLYESQLL-SQQQTHMNIYKSVSLSDMEHKGESQM---------- 91
            INEAWN LKD  +RK Y+++LL S+ + H NIY SV+LSDM H+   +M          
Sbjct: 64  AINEAWNTLKDPIKRKHYDAELLQSKFEKHNNIYASVTLSDM-HRTRVEMAEDDEEGENE 122

Query: 92  --------------------------FTYPCRCGAEFCI--EEQDTEGDGSDDNILIACD 123
                                     + Y CRCG ++ +  +E   E       +++ C 
Sbjct: 123 NENEIETDKESATTTTTAAAAKWSSAYAYDCRCGGQYVLLDDESQREQQPRASEMIVECS 182

Query: 124 TCSLLL 129
            CSL++
Sbjct: 183 ECSLVI 188

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|284447355|ref|NP_001037943.2| DnaJ (Hsp40) homolog, subfamily C, member 24 [Xenopus (Silurana) tropicalis] gi|197246665|gb|AAI68456.1| dnajc24 protein [Xenopus (Silurana) tropicalis]

 Score = 89.0 bits (219), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 47/140 (33%), Positives = 76/140 (54%), Gaps = 15/140 (10%)

Query: 2   NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNS---------EHQEMFLKINEAWNILK 52
           + + IL    + T  E+K+ Y+ L L YHPDK S         E  + F++IN+AW IL 
Sbjct: 10  DWYSILGAKPSDTQAEVKQKYQKLALLYHPDKQSADMMAGQAGEGAQRFIEINQAWKILG 69

Query: 53  DEKERKLYESQLLSQQQTHM-NIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEG 111
           +E+ +K Y+ Q    + T M  +   V   D+    E+ ++++PCRCG  + + E D + 
Sbjct: 70  NEEAKKAYDLQQREAELTKMWPVDNQVHWEDLSWDPETMVYSFPCRCGGSYAMTESDRK- 128

Query: 112 DGSDDNILIACDTCSLLLEI 131
               D  L+ CD+CSL++EI
Sbjct: 129 ----DVSLVNCDSCSLIIEI 144

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|334331629|ref|XP_001380365.2| PREDICTED: dnaJ homolog subfamily C member 24-like [Monodelphis domestica]

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 81/141 (57%), Gaps = 15/141 (10%)

Query: 2   NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNS---------EHQEMFLKINEAWNILK 52
           + + +L    +++L+++K+ Y+ LIL YHPDK S         EH + F++I++AW IL 
Sbjct: 10  DWYSVLGAEPSASLKDLKQKYQKLILMYHPDKQSADVPAGAVEEHVQKFIEIDQAWKILG 69

Query: 53  DEKERKLYESQLLSQQ-QTHMNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEG 111
           +E+ +K Y+ Q      ++   +   + L DM    + Q FT  CRCG ++C+ +     
Sbjct: 70  NEETKKAYDLQRREDDLRSSGPVDAQICLEDMLWNKDDQCFTLSCRCGGKYCVSK----- 124

Query: 112 DGSDDNILIACDTCSLLLEIT 132
           D +++  LI CDTCSL++EI 
Sbjct: 125 DEAEEVNLICCDTCSLIIEIV 145

Source: Monodelphis domestica

Species: Monodelphis domestica

Genus: Monodelphis

Family: Didelphidae

Order: Didelphimorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	134
ZFIN|ZDB-GENE-040426-1153	149	dnajc24 "DnaJ (Hsp40) homolog,	0.910	0.818	0.323	1.8e-16
UNIPROTKB|Q0VBY7	148	DNAJC24 "DnaJ homolog subfamil	0.917	0.831	0.304	9.8e-16
POMBASE|SPAC926.05c	139	dph4 "diphthamide biosynthesis	0.917	0.884	0.326	2.6e-15
DICTYBASE|DDB_G0292980	170	dph4 "diphthamide biosynthesis	0.880	0.694	0.327	4.2e-15
MGI|MGI:1919522	196	Dnajc24 "DnaJ (Hsp40) homolog,	0.917	0.627	0.297	6.9e-15
UNIPROTKB|Q6P3W2	148	DNAJC24 "DnaJ homolog subfamil	0.917	0.831	0.297	1.1e-14
TAIR|locus:2124685	174	AT4G10130 [Arabidopsis thalian	0.783	0.603	0.350	4.9e-14
UNIPROTKB|C9JDE6	211	DNAJA4 "DnaJ homolog subfamily	0.440	0.279	0.423	5.8e-12
UNIPROTKB|F5H170	219	DNAJA4 "DnaJ homolog subfamily	0.440	0.269	0.423	5.8e-12
GENEDB_PFALCIPARUM|MAL13P1.162	247	MAL13P1.162 "DNAJ-like protein	0.686	0.372	0.36	1.7e-11

ZFIN|ZDB-GENE-040426-1153 dnajc24 "DnaJ (Hsp40) homolog, subfamily C, member 24" [Danio rerio (taxid:7955)]

 Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 44/136 (32%), Positives = 76/136 (55%)

Query:     6 ILNCNVNSTLEEIKENYKSLILKYHPDKN----SE-----HQEMFLKINEAWNILKDEKE 56
             IL       L+ +K+ Y+ L+L +HPDK     SE     H + F+ I++AW IL +E+ 
Sbjct:    14 ILGACPTDDLQVLKQKYQKLVLMFHPDKQRPDVSEEEAEQHLQRFIDIDQAWKILSNEES 73

Query:    57 RKLYESQLLS-QQQTHMNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDGSD 115
             R  Y  QL + + +    +   ++L DM    E++ ++Y CRCG EF +E+ +T+    +
Sbjct:    74 RNEYNLQLRACELKQSWPVDAHITLDDMNWDYETECYSYTCRCGGEFILEKDETQ----E 129

Query:   116 DNILIACDTCSLLLEI 131
                ++ CD+CSL +E+
Sbjct:   130 VETVVCCDSCSLSIEV 145

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q0VBY7 DNAJC24 "DnaJ homolog subfamily C member 24" [Bos taurus (taxid:9913)]

 Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 42/138 (30%), Positives = 77/138 (55%)

Query:     4 FEILNCNVNSTLEEIKENYKSLILKYHPDKNS---------EHQEMFLKINEAWNILKDE 54
             + IL  + ++++ ++K+ Y+ LIL YHPDK S         E  + F++I++AW IL +E
Sbjct:    12 YSILGADPSASVSDLKQKYQKLILMYHPDKQSADAPAGSVEECIQKFIEIDQAWKILGNE 71

Query:    55 KERKLYESQLLSQQQTHMN-IYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDG 113
             + +K Y+ Q       +M  +   + L +M    +   F+  CRCG ++ + + + E   
Sbjct:    72 ETKKEYDLQRHEDDLRNMGPVDARIYLEEMSWNEDDHSFSLSCRCGGKYSVSKDEAE--- 128

Query:   114 SDDNILIACDTCSLLLEI 131
               +  LI+CDTCSL++E+
Sbjct:   129 --EVTLISCDTCSLIIEL 144

GO:0046872 "metal ion binding" evidence=IEA

POMBASE|SPAC926.05c dph4 "diphthamide biosynthesis protein Dph4 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 45/138 (32%), Positives = 72/138 (52%)

Query:     1 MNHFEILNCNVNSTL--EEIKENYKSLILKYHPDKNSEHQEMFLKIN---EAWNILKDEK 55
             MNH+ +LN     T   +EIKE Y+  +L +HPDK  E   +   I+   EA+ +L  EK
Sbjct:     1 MNHYSVLNLKDGKTYTDDEIKEAYRKALLLFHPDKCKEKPSVVYTIDQVKEAYQVLSSEK 60

Query:    56 ERKLYESQLLSQQQTHMNIYKSVSLSDMEHKGESQMFTYPCRCG--AEFCIEEQDTEGDG 113
             +R+ Y+   + Q++   + Y  V LS+ E       + YPCRCG    + + E D E + 
Sbjct:    61 DRQQYQ---IKQEEESSHYYSIVDLSEFEELDNGSYY-YPCRCGDLGGYVVTEDDLENNR 116

Query:   114 SDDNILIACDTCSLLLEI 131
             S    ++ C  CSL +++
Sbjct:   117 S----VVPCMGCSLTIQV 130

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0006457 "protein folding" evidence=NAS

GO:0017183 "peptidyl-diphthamide biosynthetic process from peptidyl-histidine" evidence=ISO

GO:0030544 "Hsp70 protein binding" evidence=ISM

GO:0046872 "metal ion binding" evidence=IEA

DICTYBASE|DDB_G0292980 dph4 "diphthamide biosynthesis protein 4" [Dictyostelium discoideum (taxid:44689)]

 Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 40/122 (32%), Positives = 66/122 (54%)

Query:    10 NVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQQ 69
             N    +EE   N+ + ++  + + N+ + + F  I  AW  LKD+  RK Y+S LL Q++
Sbjct:    48 NKEENIEENINNFSNCLVNNNNNNNNSNTKDFNDIQIAWETLKDDLLRKQYDSLLLEQKR 107

Query:    70 THMNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDGSDDNILIACDTCSLLL 129
                ++   + L DME   E+  + YPCRCG  + I E D   +GSD   ++ C  CSL +
Sbjct:   108 QKYSVSDEIDLDDMEFIEENSEYVYPCRCGDHYIITE-DQLSEGSD---VVCCSGCSLSI 163

Query:   130 EI 131
             ++
Sbjct:   164 KV 165

GO:0017183 "peptidyl-diphthamide biosynthetic process from peptidyl-histidine" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0046872 "metal ion binding" evidence=IEA

MGI|MGI:1919522 Dnajc24 "DnaJ (Hsp40) homolog, subfamily C, member 24" [Mus musculus (taxid:10090)]

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 41/138 (29%), Positives = 75/138 (54%)

Query:     4 FEILNCNVNSTLEEIKENYKSLILKYHPDKNS---------EHQEMFLKINEAWNILKDE 54
             + IL  + ++ + ++K+ Y+ LIL YHPDK S         E  + F++I++AW IL +E
Sbjct:    60 YSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNE 119

Query:    55 KERKLYESQLLSQQQTHMN-IYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDG 113
             + +K Y+ Q    +  ++  +   V L +M      + F   CRCG ++ + +     D 
Sbjct:   120 ETKKKYDLQRHEDELRNVGPVDAQVRLEEMSWNQGDESFFLSCRCGGKYTVSK-----DE 174

Query:   114 SDDNILIACDTCSLLLEI 131
             + +  LI+CD CSL++E+
Sbjct:   175 AQEATLISCDACSLIVEL 192

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|Q6P3W2 DNAJC24 "DnaJ homolog subfamily C member 24" [Homo sapiens (taxid:9606)]

 Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 41/138 (29%), Positives = 74/138 (53%)

Query:     4 FEILNCNVNSTLEEIKENYKSLILKYHPDKNS---------EHQEMFLKINEAWNILKDE 54
             + IL  + ++ + ++K+ Y+ LIL YHPDK S         E  + F++I++AW IL +E
Sbjct:    12 YSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNE 71

Query:    55 KERKLYESQLLSQQQTHMN-IYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDG 113
             + ++ Y+ Q       ++  +   V L +M        F   CRCG ++ + + + E   
Sbjct:    72 ETKREYDLQRCEDDLRNVGPVDAQVYLEEMSWNEGDHSFYLSCRCGGKYSVSKDEAE--- 128

Query:   114 SDDNILIACDTCSLLLEI 131
               +  LI+CDTCSL++E+
Sbjct:   129 --EVSLISCDTCSLIIEL 144

GO:0046872 "metal ion binding" evidence=IEA

TAIR|locus:2124685 AT4G10130 [Arabidopsis thaliana (taxid:3702)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 40/114 (35%), Positives = 64/114 (56%)

Query:     3 HFEILNCNVNSTLEEIKENYKSLILKYHPDK------NSEHQEMFLKINEAWNILKDEKE 56
             ++EIL+   +++ EEI+ +Y+S IL  HPDK      +S   E FLKI +AW +L D + 
Sbjct:    12 YYEILSVKEDASYEEIRNSYRSAILHSHPDKLNNTSRSSSDDEKFLKIQKAWEVLSDAEL 71

Query:    57 RKLYESQLLSQQQTHMNIYKSVSLSDM--EHKGESQMFTYPCRCGAEFCIEEQD 108
             R +Y++ L S +   +     +S+ DM  E  G+     Y CRCG  FC++  +
Sbjct:    72 RVVYDNDLRSSRHDGITA-DEISIEDMSVEITGDVIDLFYQCRCGDYFCVDSSE 124

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=ISS

GO:0031072 "heat shock protein binding" evidence=IEA

UNIPROTKB|C9JDE6 DNAJA4 "DnaJ homolog subfamily A member 4" [Homo sapiens (taxid:9606)]

 Score = 140 (54.3 bits), Expect = 5.8e-12, Sum P(2) = 5.8e-12
 Identities = 25/59 (42%), Positives = 41/59 (69%)

Query:     3 HFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYE 61
             +++IL    +++ EEIK+ Y+ L LKYHPDKN +  E F  I++A+ +L D K+R +Y+
Sbjct:     7 YYDILGVKPSASPEEIKKAYRKLALKYHPDKNPDEGEKFKLISQAYEVLSDPKKRDVYD 65

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F5H170 DNAJA4 "DnaJ homolog subfamily A member 4" [Homo sapiens (taxid:9606)]

 Score = 140 (54.3 bits), Expect = 5.8e-12, Sum P(2) = 5.8e-12
 Identities = 25/59 (42%), Positives = 41/59 (69%)

Query:     3 HFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYE 61
             +++IL    +++ EEIK+ Y+ L LKYHPDKN +  E F  I++A+ +L D K+R +Y+
Sbjct:     7 YYDILGVKPSASPEEIKKAYRKLALKYHPDKNPDEGEKFKLISQAYEVLSDPKKRDVYD 65

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GENEDB_PFALCIPARUM|MAL13P1.162 MAL13P1.162 "DNAJ-like protein, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 36/100 (36%), Positives = 58/100 (58%)

Query:     2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDKN----SEHQEMFLKINEAWNILKDEKER 57
             N ++ILN   +S   EIK+ Y+ L LKYHPD+N     E ++ F +I EA+  L D+ ++
Sbjct:    43 NFYDILNIKKDSNKNEIKQAYRKLALKYHPDRNPNNRKESEQKFREITEAYETLSDDNKK 102

Query:    58 KLYESQLLS---QQQTHMNIYKSVSLSD-MEHKGESQMFT 93
             K+Y+SQL +       + N Y + S S+ M +  +S+  T
Sbjct:   103 KMYDSQLNNGFYSNNFNNNYYNTTSNSNHMNYNYQSKRMT 142

GO:0006986 "response to unfolded protein" evidence=ISS

GO:0009408 "response to heat" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0VBY7	DJC24_BOVIN	No assigned EC number	0.3	0.9328	0.8445	yes	N/A
Q9UUG3	DPH4_SCHPO	No assigned EC number	0.3260	0.9179	0.8848	yes	N/A
Q752D7	DPH4_ASHGO	No assigned EC number	0.2638	0.9701	0.8333	yes	N/A
Q6P3W2	DJC24_HUMAN	No assigned EC number	0.2928	0.9328	0.8445	yes	N/A
Q54CI5	DPH4_DICDI	No assigned EC number	0.3290	0.9402	0.7411	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	134
pfam00226	63	pfam00226, DnaJ, DnaJ domain	1e-20
cd06257	55	cd06257, DnaJ, DnaJ domain or J-domain	7e-18
smart00271	60	smart00271, DnaJ, DnaJ molecular chaperone homolog	3e-16
PRK14291	382	PRK14291, PRK14291, chaperone protein DnaJ; Provis	4e-15
COG2214	237	COG2214, CbpA, DnaJ-class molecular chaperone [Pos	2e-14
COG0484	371	COG0484, DnaJ, DnaJ-class molecular chaperone with	1e-13
PRK14284	391	PRK14284, PRK14284, chaperone protein DnaJ; Provis	3e-13
PRK14299	291	PRK14299, PRK14299, chaperone protein DnaJ; Provis	6e-13
TIGR02349	354	TIGR02349, DnaJ_bact, chaperone protein DnaJ	9e-13
PRK14292	371	PRK14292, PRK14292, chaperone protein DnaJ; Provis	3e-12
PRK14277	386	PRK14277, PRK14277, chaperone protein DnaJ; Provis	5e-12
PRK10767	371	PRK10767, PRK10767, chaperone protein DnaJ; Provis	1e-11
PRK14288	369	PRK14288, PRK14288, chaperone protein DnaJ; Provis	1e-11
PRK14281	397	PRK14281, PRK14281, chaperone protein DnaJ; Provis	2e-11
PRK14298	377	PRK14298, PRK14298, chaperone protein DnaJ; Provis	2e-11
pfam05207	55	pfam05207, zf-CSL, CSL zinc finger	2e-11
PRK14295	389	PRK14295, PRK14295, chaperone protein DnaJ; Provis	3e-11
PRK14282	369	PRK14282, PRK14282, chaperone protein DnaJ; Provis	7e-11
PTZ00037	421	PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov	7e-11
PRK14286	372	PRK14286, PRK14286, chaperone protein DnaJ; Provis	1e-10
PRK14294	366	PRK14294, PRK14294, chaperone protein DnaJ; Provis	2e-10
PRK14297	380	PRK14297, PRK14297, chaperone protein DnaJ; Provis	1e-09
PRK14283	378	PRK14283, PRK14283, chaperone protein DnaJ; Provis	3e-09
PRK14289	386	PRK14289, PRK14289, chaperone protein DnaJ; Provis	4e-09
PRK14280	376	PRK14280, PRK14280, chaperone protein DnaJ; Provis	6e-09
PRK14290	365	PRK14290, PRK14290, chaperone protein DnaJ; Provis	1e-08
PRK10266	306	PRK10266, PRK10266, curved DNA-binding protein Cbp	2e-08
PRK14301	373	PRK14301, PRK14301, chaperone protein DnaJ; Provis	3e-08
PRK14293	374	PRK14293, PRK14293, chaperone protein DnaJ; Provis	6e-08
PRK14279	392	PRK14279, PRK14279, chaperone protein DnaJ; Provis	7e-08
PRK14287	371	PRK14287, PRK14287, chaperone protein DnaJ; Provis	8e-08
PRK14276	380	PRK14276, PRK14276, chaperone protein DnaJ; Provis	8e-08
PRK14278	378	PRK14278, PRK14278, chaperone protein DnaJ; Provis	9e-08
PRK14296	372	PRK14296, PRK14296, chaperone protein DnaJ; Provis	1e-07
PRK14285	365	PRK14285, PRK14285, chaperone protein DnaJ; Provis	1e-07
COG5407	610	COG5407, SEC63, Preprotein translocase subunit Sec	1e-06
PRK14300	372	PRK14300, PRK14300, chaperone protein DnaJ; Provis	2e-06
COG5216	67	COG5216, COG5216, Uncharacterized conserved protei	5e-06
TIGR03835	871	TIGR03835, termin_org_DnaJ, terminal organelle ass	2e-05
PTZ00100	116	PTZ00100, PTZ00100, DnaJ chaperone protein; Provis	1e-04
PTZ00341	1136	PTZ00341, PTZ00341, Ring-infected erythrocyte surf	8e-04
COG5269	379	COG5269, ZUO1, Ribosome-associated chaperone zuoti	0.001

>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain

 Score = 78.7 bits (195), Expect = 1e-20
 Identities = 27/62 (43%), Positives = 42/62 (67%), Gaps = 3/62 (4%)

Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNS---EHQEMFLKINEAWNILKDEKERK 58
          +++EIL    +++ EEIK+ Y+ L LKYHPDKN      +E F +INEA+ +L D ++R 
Sbjct: 1  DYYEILGVPRDASDEEIKKAYRKLALKYHPDKNPGDPAAEEKFKEINEAYEVLSDPEKRA 60

Query: 59 LY 60
          +Y
Sbjct: 61 IY 62

DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature. Length = 63

>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain

 Score = 71.4 bits (176), Expect = 7e-18
 Identities = 24/55 (43%), Positives = 38/55 (69%), Gaps = 3/55 (5%)

Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEH---QEMFLKINEAWNILKD 53
          ++++IL    +++ EEIK+ Y+ L LKYHPDKN +    +E F +INEA+ +L D
Sbjct: 1  DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification. Length = 55

>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain

 Score = 67.3 bits (165), Expect = 3e-16
 Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 4/59 (6%)

Query: 1  MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQ----EMFLKINEAWNILKDEK 55
           +++EIL    +++L+EIK+ Y+ L LKYHPDKN   +    E F +INEA+ +L D +
Sbjct: 1  TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE 59

Length = 60

>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional

 Score = 70.2 bits (172), Expect = 4e-15
 Identities = 31/62 (50%), Positives = 45/62 (72%), Gaps = 2/62 (3%)

Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPD--KNSEHQEMFLKINEAWNILKDEKERKL 59
          +++EIL  + N+T EEIK+ Y+ L  KYHPD  KN E +E F +INEA+ +L D ++RKL
Sbjct: 4  DYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKL 63

Query: 60 YE 61
          Y+
Sbjct: 64 YD 65

Length = 382

>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

 Score = 66.8 bits (162), Expect = 2e-14
 Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 4/64 (6%)

Query: 1  MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKNS----EHQEMFLKINEAWNILKDEKE 56
          ++++EIL    N++LEEIK+ Y+ L LKYHPD+N       +E F +INEA+ IL D + 
Sbjct: 6  LDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPER 65

Query: 57 RKLY 60
          R  Y
Sbjct: 66 RAEY 69

Length = 237

>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

 Score = 65.3 bits (160), Expect = 1e-13
 Identities = 26/63 (41%), Positives = 42/63 (66%), Gaps = 3/63 (4%)

Query: 1  MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKNS---EHQEMFLKINEAWNILKDEKER 57
           +++EIL  + +++ EEIK+ Y+ L  KYHPD+N    E +E F +INEA+ +L D ++R
Sbjct: 4  RDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKR 63

Query: 58 KLY 60
            Y
Sbjct: 64 AAY 66

Length = 371

>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional

 Score = 64.5 bits (157), Expect = 3e-13
 Identities = 24/64 (37%), Positives = 44/64 (68%), Gaps = 3/64 (4%)

Query: 1  MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKNS---EHQEMFLKINEAWNILKDEKER 57
          M+++ IL  +  ++ EEIK+ Y+ L +KYHPDKN    E ++ F +++EA+ +L D ++R
Sbjct: 1  MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKR 60

Query: 58 KLYE 61
          + Y+
Sbjct: 61 ESYD 64

Length = 391

>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional

 Score = 63.4 bits (154), Expect = 6e-13
 Identities = 24/63 (38%), Positives = 43/63 (68%), Gaps = 2/63 (3%)

Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPD--KNSEHQEMFLKINEAWNILKDEKERKL 59
          +++ IL    N++ +EIK+ +K L  KYHPD  K+   +E F +INEA+ +L D ++R++
Sbjct: 5  DYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRI 64

Query: 60 YES 62
          Y++
Sbjct: 65 YDT 67

Length = 291

>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ

 Score = 63.0 bits (154), Expect = 9e-13
 Identities = 25/59 (42%), Positives = 40/59 (67%), Gaps = 2/59 (3%)

Query: 4  FEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQ--EMFLKINEAWNILKDEKERKLY 60
          +EIL  + +++ EEIK+ Y+ L  KYHPD+N + +  E F +INEA+ +L D ++R  Y
Sbjct: 3  YEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQY 61

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354

>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional

 Score = 61.8 bits (150), Expect = 3e-12
 Identities = 26/63 (41%), Positives = 42/63 (66%), Gaps = 2/63 (3%)

Query: 1  MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEH--QEMFLKINEAWNILKDEKERK 58
          M+++E+L  +  ++ +EIK  Y+ L LKYHPD+N E    E F +INEA+ +L D ++R 
Sbjct: 2  MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRA 61

Query: 59 LYE 61
           Y+
Sbjct: 62 HYD 64

Length = 371

>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional

 Score = 61.4 bits (149), Expect = 5e-12
 Identities = 28/63 (44%), Positives = 42/63 (66%), Gaps = 3/63 (4%)

Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPDKN---SEHQEMFLKINEAWNILKDEKERK 58
          +++EIL  + N+T EEIK+ Y+ L  KYHPD N    E ++ F +INEA+ IL D ++R 
Sbjct: 6  DYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRA 65

Query: 59 LYE 61
           Y+
Sbjct: 66 QYD 68

Length = 386

>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional

 Score = 60.2 bits (147), Expect = 1e-11
 Identities = 24/60 (40%), Positives = 40/60 (66%), Gaps = 3/60 (5%)

Query: 4  FEILNCNVNSTLEEIKENYKSLILKYHPDKNS---EHQEMFLKINEAWNILKDEKERKLY 60
          +E+L  + N++ +EIK+ Y+ L +KYHPD+N    E +E F +I EA+ +L D ++R  Y
Sbjct: 7  YEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAY 66

Length = 371

>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional

 Score = 60.1 bits (145), Expect = 1e-11
 Identities = 30/64 (46%), Positives = 45/64 (70%), Gaps = 3/64 (4%)

Query: 1  MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKNS---EHQEMFLKINEAWNILKDEKER 57
          ++++EIL    +S  E IK++Y+ L LKYHPD+N+   E +E F  INEA+ +L DEK+R
Sbjct: 3  LSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKR 62

Query: 58 KLYE 61
           LY+
Sbjct: 63 ALYD 66

Length = 369

>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional

 Score = 59.8 bits (145), Expect = 2e-11
 Identities = 24/63 (38%), Positives = 44/63 (69%), Gaps = 3/63 (4%)

Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPDKN---SEHQEMFLKINEAWNILKDEKERK 58
          +++E+L  + ++  +EIK+ Y+ L LKYHPDKN    E +E F ++NEA+ +L ++ +R+
Sbjct: 4  DYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRR 63

Query: 59 LYE 61
           Y+
Sbjct: 64 RYD 66

Length = 397

>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional

 Score = 59.5 bits (144), Expect = 2e-11
 Identities = 25/62 (40%), Positives = 45/62 (72%), Gaps = 2/62 (3%)

Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSE--HQEMFLKINEAWNILKDEKERKL 59
          +++EIL  + ++++E+IK+ Y+ L +KYHPDKN E   +E F +I+EA+ +L D ++R  
Sbjct: 6  DYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQ 65

Query: 60 YE 61
          Y+
Sbjct: 66 YD 67

Length = 377

>gnl|CDD|191232 pfam05207, zf-CSL, CSL zinc finger

 Score = 54.9 bits (133), Expect = 2e-11
 Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 4/54 (7%)

Query: 78  VSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEI 131
           V L D E   E   F YPCRCG EF I E+D E    +  +++ C +CSL +++
Sbjct: 3   VELEDFEFDEEEGSFYYPCRCGDEFEITEEDLE----EGEVVVQCPSCSLWIKV 52

This is a zinc binding motif which contains four cysteine residues which chelate zinc. This domain is often found associated with a pfam00226 domain. This domain is named after the conserved motif of the final cysteine. Length = 55

>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional

 Score = 58.7 bits (142), Expect = 3e-11
 Identities = 24/63 (38%), Positives = 44/63 (69%), Gaps = 3/63 (4%)

Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPDKN---SEHQEMFLKINEAWNILKDEKERK 58
          +++++L    ++T  EIK+ Y+ L  +YHPD N   ++ +E F +I+EA+++L DEK+RK
Sbjct: 10 DYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRK 69

Query: 59 LYE 61
           Y+
Sbjct: 70 EYD 72

Length = 389

>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional

 Score = 57.9 bits (140), Expect = 7e-11
 Identities = 24/64 (37%), Positives = 44/64 (68%), Gaps = 4/64 (6%)

Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEH----QEMFLKINEAWNILKDEKER 57
          +++EIL  + N+T EEIK  YK L+ ++HPD++ E+    ++ F +I EA+ +L D ++R
Sbjct: 5  DYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKR 64

Query: 58 KLYE 61
           +Y+
Sbjct: 65 AMYD 68

Length = 369

>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional

 Score = 57.9 bits (140), Expect = 7e-11
 Identities = 23/58 (39%), Positives = 40/58 (68%), Gaps = 1/58 (1%)

Query: 4  FEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYE 61
          +E+LN + + T  EIK+ Y+ L +K+HPDK  +  E F +I+ A+ +L D ++RK+Y+
Sbjct: 31 YEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD-PEKFKEISRAYEVLSDPEKRKIYD 87

Length = 421

>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional

 Score = 56.9 bits (137), Expect = 1e-10
 Identities = 26/63 (41%), Positives = 42/63 (66%), Gaps = 3/63 (4%)

Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPDKN---SEHQEMFLKINEAWNILKDEKERK 58
          ++++IL  + ++  EEIK  Y+ L +KYHPDKN    E +E F +  EA+ IL+D K+R+
Sbjct: 5  SYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQ 64

Query: 59 LYE 61
           Y+
Sbjct: 65 AYD 67

Length = 372

>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional

 Score = 57.1 bits (138), Expect = 2e-10
 Identities = 25/62 (40%), Positives = 43/62 (69%), Gaps = 3/62 (4%)

Query: 3  HFEILNCNVNSTLEEIKENYKSLILKYHPDKN---SEHQEMFLKINEAWNILKDEKERKL 59
          ++EIL    +++ EEIK++Y+ L +KYHPD+N    E +E+F +  EA+ +L D K+R +
Sbjct: 6  YYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGI 65

Query: 60 YE 61
          Y+
Sbjct: 66 YD 67

Length = 366

>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional

 Score = 54.4 bits (131), Expect = 1e-09
 Identities = 23/63 (36%), Positives = 42/63 (66%), Gaps = 3/63 (4%)

Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPDKN---SEHQEMFLKINEAWNILKDEKERK 58
          +++E+L     ++ +EIK+ ++ L +KYHPDKN    E +E F +INEA+ +L D +++ 
Sbjct: 5  DYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKA 64

Query: 59 LYE 61
           Y+
Sbjct: 65 QYD 67

Length = 380

>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional

 Score = 53.3 bits (128), Expect = 3e-09
 Identities = 23/62 (37%), Positives = 43/62 (69%), Gaps = 2/62 (3%)

Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEH--QEMFLKINEAWNILKDEKERKL 59
          +++E+L  + N+  +EIK+ Y+ L  KYHPD + E   +E F +I+EA+ +L D+++R+ 
Sbjct: 6  DYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQR 65

Query: 60 YE 61
          Y+
Sbjct: 66 YD 67

Length = 378

>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional

 Score = 52.9 bits (127), Expect = 4e-09
 Identities = 22/63 (34%), Positives = 41/63 (65%), Gaps = 3/63 (4%)

Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPDKN---SEHQEMFLKINEAWNILKDEKERK 58
          +++E+L  +  +T++EIK+ Y+   ++YHPDKN    E +E F +  EA+++L D  +R 
Sbjct: 6  DYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRS 65

Query: 59 LYE 61
           Y+
Sbjct: 66 RYD 68

Length = 386

>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional

 Score = 52.4 bits (126), Expect = 6e-09
 Identities = 23/62 (37%), Positives = 42/62 (67%), Gaps = 2/62 (3%)

Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEH--QEMFLKINEAWNILKDEKERKL 59
          +++E+L  + +++ +EIK+ Y+ L  KYHPD N E    E F +I+EA+ +L D+++R  
Sbjct: 5  DYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQ 64

Query: 60 YE 61
          Y+
Sbjct: 65 YD 66

Length = 376

>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional

 Score = 51.9 bits (124), Expect = 1e-08
 Identities = 21/64 (32%), Positives = 44/64 (68%), Gaps = 4/64 (6%)

Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPDKN----SEHQEMFLKINEAWNILKDEKER 57
          ++++IL  + N++ E+IK+ ++ L  K+HPD +    +E +E F +I+EA+ +L D ++R
Sbjct: 4  DYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKR 63

Query: 58 KLYE 61
          + Y+
Sbjct: 64 RQYD 67

Length = 365

>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional

 Score = 50.6 bits (121), Expect = 2e-08
 Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 8/89 (8%)

Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPD--KNSEHQEMFLKINEAWNILKDEKERKL 59
          +++ I+       L+ IK  Y+ L  KYHPD  K  + +  F ++ EAW +L DE+ R  
Sbjct: 5  DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 64

Query: 60 YESQLLSQ------QQTHMNIYKSVSLSD 82
          Y+     +      +Q      +S +  D
Sbjct: 65 YDQLWQHRNDPQFNRQFQHGDGQSFNAED 93

Length = 306

>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional

 Score = 50.5 bits (121), Expect = 3e-08
 Identities = 21/63 (33%), Positives = 43/63 (68%), Gaps = 3/63 (4%)

Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPDKN---SEHQEMFLKINEAWNILKDEKERK 58
          +++E+L  + +++ +EIK+ Y+ L L+YHPD+N    E ++ F +  EA+ +L+D ++R 
Sbjct: 5  DYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRA 64

Query: 59 LYE 61
           Y+
Sbjct: 65 RYD 67

Length = 373

>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional

 Score = 49.6 bits (119), Expect = 6e-08
 Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 2/60 (3%)

Query: 4  FEILNCNVNSTLEEIKENYKSLILKYHPDKNSE--HQEMFLKINEAWNILKDEKERKLYE 61
          +EIL  + ++  +E+K  Y+ L  KYHPD N E   ++ F +IN A+ +L D + R  Y+
Sbjct: 6  YEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYD 65

Length = 374

>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional

 Score = 49.3 bits (118), Expect = 7e-08
 Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 3/53 (5%)

Query: 12 NSTLEEIKENYKSLILKYHPDKN---SEHQEMFLKINEAWNILKDEKERKLYE 61
          +++ EEIK+ Y+ L  + HPD N      +E F  ++EA ++L D  +RK Y+
Sbjct: 20 DASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYD 72

Length = 392

>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional

 Score = 49.2 bits (117), Expect = 8e-08
 Identities = 19/62 (30%), Positives = 41/62 (66%), Gaps = 2/62 (3%)

Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEH--QEMFLKINEAWNILKDEKERKL 59
          +++E+L  + N++++E+K+ Y+ L  KYHPD N     ++ F ++ EA++ L D +++  
Sbjct: 5  DYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAH 64

Query: 60 YE 61
          Y+
Sbjct: 65 YD 66

Length = 371

>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional

 Score = 48.9 bits (117), Expect = 8e-08
 Identities = 20/60 (33%), Positives = 37/60 (61%), Gaps = 2/60 (3%)

Query: 4  FEILNCNVNSTLEEIKENYKSLILKYHPDKNSE--HQEMFLKINEAWNILKDEKERKLYE 61
          ++ L  + +++ +EIK+ Y+ L  KYHPD N E   +E + ++ EA+  L D ++R  Y+
Sbjct: 7  YDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYD 66

Length = 380

>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional

 Score = 48.9 bits (117), Expect = 9e-08
 Identities = 20/62 (32%), Positives = 38/62 (61%), Gaps = 2/62 (3%)

Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPDKN--SEHQEMFLKINEAWNILKDEKERKL 59
          +++ +L  + N++  EIK  Y+ L  + HPD N   E QE F +I+ A+ +L D ++R++
Sbjct: 4  DYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRI 63

Query: 60 YE 61
           +
Sbjct: 64 VD 65

Length = 378

>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional

 Score = 48.8 bits (116), Expect = 1e-07
 Identities = 20/62 (32%), Positives = 42/62 (67%), Gaps = 2/62 (3%)

Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPD--KNSEHQEMFLKINEAWNILKDEKERKL 59
          +++E+L  +  ++ +EI++ Y+ L  +YHPD  K+ +  +  ++INEA ++L D+ +RK 
Sbjct: 5  DYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQ 64

Query: 60 YE 61
          Y+
Sbjct: 65 YD 66

Length = 372

>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional

 Score = 48.4 bits (115), Expect = 1e-07
 Identities = 22/63 (34%), Positives = 42/63 (66%), Gaps = 3/63 (4%)

Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQE---MFLKINEAWNILKDEKERK 58
          +++EIL  +  ++ +EIK+ Y+ + +KYHPDKN  ++E   +F +  EA+ +L D+ +R 
Sbjct: 4  DYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRA 63

Query: 59 LYE 61
           Y+
Sbjct: 64 QYD 66

Length = 365

>gnl|CDD|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

 Score = 46.1 bits (109), Expect = 1e-06
 Identities = 22/65 (33%), Positives = 40/65 (61%), Gaps = 8/65 (12%)

Query: 4   FEILNCNVNSTLEEIKENYKSLILKYHPDK--------NSEHQEMFLKINEAWNILKDEK 55
           +EIL  + +++  +IK+ Y+ L +K+HPDK         SE++E +  I +A+ +L D+K
Sbjct: 101 YEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKK 160

Query: 56  ERKLY 60
            R+ Y
Sbjct: 161 RRENY 165

Length = 610

>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional

 Score = 45.0 bits (106), Expect = 2e-06
 Identities = 19/62 (30%), Positives = 39/62 (62%), Gaps = 2/62 (3%)

Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEH--QEMFLKINEAWNILKDEKERKL 59
          ++++IL  +  ++  ++K+ Y  L  +YHPD       ++ F +IN A+++LKDE++R  
Sbjct: 4  DYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAA 63

Query: 60 YE 61
          Y+
Sbjct: 64 YD 65

Length = 372

>gnl|CDD|227541 COG5216, COG5216, Uncharacterized conserved protein [Function unknown]

 Score = 41.4 bits (97), Expect = 5e-06
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 4/60 (6%)

Query: 72  MNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEI 131
           M+ Y  + + D     E + FTYPC CG  F I  +D      +  ++  C +CSL++ +
Sbjct: 1   MSFYDEIEIEDFTFSREEKTFTYPCPCGDRFEISLEDLR----NGEVVARCPSCSLIVCV 56

Length = 67

>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein TopJ

 Score = 42.5 bits (99), Expect = 2e-05
 Identities = 21/62 (33%), Positives = 41/62 (66%), Gaps = 2/62 (3%)

Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNS--EHQEMFLKINEAWNILKDEKERKL 59
          +++E+L  + ++  +EIK+ ++ L  KYHPD+N   +   +F +INEA ++L + K+R  
Sbjct: 3  DYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRAN 62

Query: 60 YE 61
          Y+
Sbjct: 63 YD 64

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility [Cellular processes, Chemotaxis and motility]. Length = 871

>gnl|CDD|240265 PTZ00100, PTZ00100, DnaJ chaperone protein; Provisional

 Score = 39.1 bits (91), Expect = 1e-04
 Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 4   FEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNIL 51
           ++ILN +  ++ E I+E +K L+L+ HPD N     +  K+NEA ++L
Sbjct: 68  YKILNISPTASKERIREAHKQLMLRNHPD-NGGSTYIASKVNEAKDLL 114

Length = 116

>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional

 Score = 37.8 bits (87), Expect = 8e-04
 Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 2/60 (3%)

Query: 3   HFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEM--FLKINEAWNILKDEKERKLY 60
            ++IL   VN+ ++EI E Y  L   Y+P K S ++    F KINEA+ IL D  ++K+Y
Sbjct: 575 FYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMY 634

Length = 1136

>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

 Score = 37.3 bits (86), Expect = 0.001
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 5/52 (9%)

Query: 16  EEIKENYKSLILKYHPDK-----NSEHQEMFLKINEAWNILKDEKERKLYES 62
            +I + +K  + KYHPDK     N    E F  I +A  +L D K R  Y+S
Sbjct: 61  PQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDS 112

Length = 379

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	134
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	99.96
KOG0712|consensus	337		99.94
PTZ00037	421	DnaJ_C chaperone protein; Provisional	99.92
KOG0713|consensus	336		99.91
PRK14296	372	chaperone protein DnaJ; Provisional	99.91
PRK14288	369	chaperone protein DnaJ; Provisional	99.91
PRK14286	372	chaperone protein DnaJ; Provisional	99.9
PRK14298	377	chaperone protein DnaJ; Provisional	99.89
PRK14287	371	chaperone protein DnaJ; Provisional	99.89
PRK14276	380	chaperone protein DnaJ; Provisional	99.88
PRK14280	376	chaperone protein DnaJ; Provisional	99.88
PRK14285	365	chaperone protein DnaJ; Provisional	99.88
PRK14278	378	chaperone protein DnaJ; Provisional	99.88
PRK14282	369	chaperone protein DnaJ; Provisional	99.88
PRK14297	380	chaperone protein DnaJ; Provisional	99.87
PRK14284	391	chaperone protein DnaJ; Provisional	99.87
PRK10767	371	chaperone protein DnaJ; Provisional	99.87
PRK14283	378	chaperone protein DnaJ; Provisional	99.87
PRK14277	386	chaperone protein DnaJ; Provisional	99.87
PRK14294	366	chaperone protein DnaJ; Provisional	99.87
PRK14301	373	chaperone protein DnaJ; Provisional	99.87
PRK14295	389	chaperone protein DnaJ; Provisional	99.87
PRK14291	382	chaperone protein DnaJ; Provisional	99.86
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	99.85
PRK14279	392	chaperone protein DnaJ; Provisional	99.85
PRK14292	371	chaperone protein DnaJ; Provisional	99.84
PRK14289	386	chaperone protein DnaJ; Provisional	99.84
PRK14300	372	chaperone protein DnaJ; Provisional	99.84
PRK14290	365	chaperone protein DnaJ; Provisional	99.83
PRK14293	374	chaperone protein DnaJ; Provisional	99.83
KOG0716|consensus	279		99.83
PRK14299	291	chaperone protein DnaJ; Provisional	99.82
PF00226	64	DnaJ: DnaJ domain; InterPro: IPR001623 The prokary	99.81
KOG0717|consensus	508		99.81
KOG0715|consensus	288		99.8
PRK14281	397	chaperone protein DnaJ; Provisional	99.8
KOG0718|consensus	546		99.79
PRK10266	306	curved DNA-binding protein CbpA; Provisional	99.78
KOG0691|consensus	296		99.77
PTZ00341	1136	Ring-infected erythrocyte surface antigen; Provisi	99.76
KOG0719|consensus	264		99.75
KOG0721|consensus	230		99.73
smart00271	60	DnaJ DnaJ molecular chaperone homology domain.	99.72
cd06257	55	DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho	99.71
PHA03102	153	Small T antigen; Reviewed	99.69
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	99.69
KOG2923|consensus	67		99.68
KOG0720|consensus	490		99.68
PF05207	55	zf-CSL: CSL zinc finger; InterPro: IPR007872 Zinc	99.67
PRK05014	171	hscB co-chaperone HscB; Provisional	99.67
COG2214	237	CbpA DnaJ-class molecular chaperone [Posttranslati	99.67
PRK01356	166	hscB co-chaperone HscB; Provisional	99.63
PRK00294	173	hscB co-chaperone HscB; Provisional	99.63
PRK03578	176	hscB co-chaperone HscB; Provisional	99.61
KOG0624|consensus	504		99.55
COG5216	67	Uncharacterized conserved protein [Function unknow	99.53
KOG0550|consensus	486		99.52
KOG0722|consensus	329		99.49
COG5407	610	SEC63 Preprotein translocase subunit Sec63 [Intrac	99.46
PTZ00100	116	DnaJ chaperone protein; Provisional	99.46
PRK09430	267	djlA Dna-J like membrane chaperone protein; Provis	99.41
KOG0714|consensus	306		99.39
PHA02624	647	large T antigen; Provisional	99.39
PRK01773	173	hscB co-chaperone HscB; Provisional	99.36
TIGR00714	157	hscB Fe-S protein assembly co-chaperone HscB. This	99.22
KOG1150|consensus	250		99.12
COG5269	379	ZUO1 Ribosome-associated chaperone zuotin [Transla	99.03
KOG0568|consensus	342		98.63
KOG1789|consensus	2235		98.53
KOG0723|consensus	112		98.5
KOG3192|consensus	168		97.98
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	97.47
KOG0431|consensus	453		97.3
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	96.97
PF03656	127	Pam16: Pam16; InterPro: IPR005341 The Pam16 protei	96.24
COG1996	49	RPC10 DNA-directed RNA polymerase, subunit RPC10 (	96.05
TIGR02098	38	MJ0042_CXXC MJ0042 family finger-like domain. This	95.43
PF13719	37	zinc_ribbon_5: zinc-ribbon domain	93.97
PF11833	194	DUF3353: Protein of unknown function (DUF3353); In	93.1
PF13446	62	RPT: A repeated domain in UCH-protein	92.34
PF13717	36	zinc_ribbon_4: zinc-ribbon domain	91.94
PF05180	66	zf-DNL: DNL zinc finger; InterPro: IPR007853 Zinc	91.71
smart00659	44	RPOLCX RNA polymerase subunit CX. present in RNA p	90.43
KOG0724|consensus	335		90.4
PF05280	175	FlhC: Flagellar transcriptional activator (FlhC);	88.38
PF14687	112	DUF4460: Domain of unknown function (DUF4460)	87.92
PRK00398	46	rpoP DNA-directed RNA polymerase subunit P; Provis	87.66
PF09723	42	Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR0134	87.17
TIGR01206	54	lysW lysine biosynthesis protein LysW. This very s	85.44
smart00834	41	CxxC_CXXC_SSSS Putative regulatory protein. CxxC_C	85.38
PRK12860	189	transcriptional activator FlhC; Provisional	83.71
KOG3277|consensus	165		83.47
PRK12722	187	transcriptional activator FlhC; Provisional	83.09
TIGR02605	52	CxxC_CxxC_SSSS putative regulatory protein, FmdB f	81.77

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=2.4e-30  Score=203.38  Aligned_cols=126  Identities=25%  Similarity=0.353  Sum_probs=95.6

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHHHhccChHHHHHHHHHhhhhhhccc--c--
Q psy7114           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK---NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQQTHM--N--   73 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk---~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~~--~--   73 (134)
                      +|||+||||+++||.+|||+|||+||++||||+   .+.|+++|++|++||+||+||++|+.||+++......++  .  
T Consensus         4 ~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~gg~gg~g   83 (371)
T COG0484           4 RDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKAGGFGGFG   83 (371)
T ss_pred             cchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccccCCcCCCC
Confidence            699999999999999999999999999999999   468999999999999999999999999999998765321  1  


Q ss_pred             ---cc-cccCcccccccCCce--eEEeeCCCC----CeEEEecccccCCCCCCce---eEeCCCCc
Q psy7114          74 ---IY-KSVSLSDMEHKGESQ--MFTYPCRCG----AEFCIEEQDTEGDGSDDNI---LIACDTCS  126 (134)
Q Consensus        74 ---~~-~~~~~~~~~~~~~~~--~~~~~crcg----~~~~v~~~~l~~g~~~~~~---~v~C~~Cs  126 (134)
                         .. ...++++.+|++++.  .-....+-|    -...|+++|++.|.+..+.   .+.|++|+
T Consensus        84 ~~~fgg~~~DIF~~~FgGg~~~~~~~~~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C~  149 (371)
T COG0484          84 FGGFGGDFGDIFEDFFGGGGGGRRRPNRPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCH  149 (371)
T ss_pred             cCCCCCCHHHHHHHhhcCCCcccCCCCCcccCCceEEEEEeEhhhhccCceeeEecceeeECCcCC
Confidence               00 123333334542221  111123445    3788899999999876653   48888886

>KOG0712|consensus

Probab=99.94  E-value=5.9e-27  Score=182.15  Aligned_cols=123  Identities=26%  Similarity=0.340  Sum_probs=96.5

Q ss_pred             CccccccCCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccChHHHHHHHHHhhhhhhcccccccccCcc
Q psy7114           2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQQTHMNIYKSVSLS   81 (134)
Q Consensus         2 ~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~~~~~~~~~~~   81 (134)
                      .+|+||||+++||.+|||+|||+|+++|||||++.+.++|++|.+||+||+||++|..||+++++....++.......|+
T Consensus         5 ~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g~~~~g~~~f~   84 (337)
T KOG0712|consen    5 KLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPDAGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGGGGGGGFGGFS   84 (337)
T ss_pred             ccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcccCCCCCCccHH
Confidence            68999999999999999999999999999999999999999999999999999999999999998886654333333355


Q ss_pred             cccccCCceeEEeeCCCC----CeEEEecccccCCCCCCce---eEeCCCCc
Q psy7114          82 DMEHKGESQMFTYPCRCG----AEFCIEEQDTEGDGSDDNI---LIACDTCS  126 (134)
Q Consensus        82 ~~~~~~~~~~~~~~crcg----~~~~v~~~~l~~g~~~~~~---~v~C~~Cs  126 (134)
                      +||- .+......+=| |    ..+.|++++++.|.+.+..   -+.|+.|+
T Consensus        85 ~~F~-~g~~~~~~~~r-g~~~~~~~~~~Le~~y~G~s~kl~l~~~~iCs~C~  134 (337)
T KOG0712|consen   85 QFFG-FGGNGGRGRQR-GKDVVHQLKVTLEELYMGKSKKLFLSRNFICSKCS  134 (337)
T ss_pred             Hhcc-CCCcCcccccc-CCCceEEEEEEHHHhhcCCccceecccCccCCcCC
Confidence            5543 22111111113 4    5899999999999777654   26677665

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=99.92  E-value=4e-25  Score=177.98  Aligned_cols=123  Identities=24%  Similarity=0.391  Sum_probs=88.2

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccChHHHHHHHHHhhhhhhcccccccccCc
Q psy7114           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQQTHMNIYKSVSL   80 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~~~~~~~~~~   80 (134)
                      +|||+||||+++||.++||+|||+||+++|||+++. .++|++|++||++|+||.+|+.||.++...........+..++
T Consensus        28 ~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~-~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~~~~~~~~d~~d~  106 (421)
T PTZ00037         28 EKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD-PEKFKEISRAYEVLSDPEKRKIYDEYGEEGLEGGEQPADASDL  106 (421)
T ss_pred             hhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch-HHHHHHHHHHHHHhccHHHHHHHhhhcchhcccCCCCcchhhh
Confidence            489999999999999999999999999999999653 6899999999999999999999999987543211111111233


Q ss_pred             ccccccCCceeEEeeCCCC----CeEEEecccccCCCCCCcee---EeCCCCc
Q psy7114          81 SDMEHKGESQMFTYPCRCG----AEFCIEEQDTEGDGSDDNIL---IACDTCS  126 (134)
Q Consensus        81 ~~~~~~~~~~~~~~~crcg----~~~~v~~~~l~~g~~~~~~~---v~C~~Cs  126 (134)
                      ++.+|+++...  ...+-|    -...|++++++.|....+.+   +.|+.|+
T Consensus       107 f~~~Fggg~~~--~~~~rg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~  157 (421)
T PTZ00037        107 FDLIFGGGRKP--GGKKRGEDIVSHLKVTLEQIYNGAMRKLAINKDVICANCE  157 (421)
T ss_pred             HHHhhcccccc--ccccCCCCEEEEeeeeHHHHhCCCceEEEeeccccccccC
Confidence            33344432110  111234    25778999999997766543   5666653

>KOG0713|consensus

Probab=99.91  E-value=9.2e-25  Score=168.61  Aligned_cols=69  Identities=36%  Similarity=0.622  Sum_probs=66.2

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHHHhccChHHHHHHHHHhhhhhh
Q psy7114           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK---NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQQ   69 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk---~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~   69 (134)
                      ||||+||||+++||..+||+||||||+++||||   +|.|.+.|+.|+.||+||+||.+|+.||.+|++..-
T Consensus        16 rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~   87 (336)
T KOG0713|consen   16 RDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLK   87 (336)
T ss_pred             CCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhc
Confidence            799999999999999999999999999999999   789999999999999999999999999999987654

>PRK14296 chaperone protein DnaJ; Provisional

Probab=99.91  E-value=1.7e-24  Score=172.21  Aligned_cols=67  Identities=28%  Similarity=0.544  Sum_probs=62.8

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHHHhccChHHHHHHHHHhhhh
Q psy7114           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK--NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQ   67 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk--~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   67 (134)
                      +|||+||||+++||.++||+|||+||+++|||+  .+.+.++|++|++||+||+||.+|+.||+++...
T Consensus         4 ~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~   72 (372)
T PRK14296          4 KDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGHAA   72 (372)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhccchh
Confidence            489999999999999999999999999999999  3668899999999999999999999999998753

>PRK14288 chaperone protein DnaJ; Provisional

Probab=99.91  E-value=1.4e-24  Score=172.52  Aligned_cols=67  Identities=45%  Similarity=0.718  Sum_probs=62.6

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHHHHhccChHHHHHHHHHhhhh
Q psy7114           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKN---SEHQEMFLKINEAWNILKDEKERKLYESQLLSQ   67 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk~---~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   67 (134)
                      +|||+||||+++||.++||+|||+||+++|||++   +.+.++|++|++||+||+||.+|+.||+++...
T Consensus         3 ~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~   72 (369)
T PRK14288          3 LSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKG   72 (369)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcccc
Confidence            4899999999999999999999999999999993   567899999999999999999999999998753

>PRK14286 chaperone protein DnaJ; Provisional

Probab=99.90  E-value=1.1e-23  Score=167.73  Aligned_cols=126  Identities=25%  Similarity=0.315  Sum_probs=88.1

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHHHhccChHHHHHHHHHhhhhhhcc--c---
Q psy7114           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK---NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQQTH--M---   72 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk---~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~--~---   72 (134)
                      +|||+||||+++||.++||+|||+|++++|||+   .+.+.++|++|++||+||+||.+|+.||+++.......  +   
T Consensus         4 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~~~   83 (372)
T PRK14286          4 RSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVNAGAGGFGQ   83 (372)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhhccccCCCCC
Confidence            489999999999999999999999999999999   35688999999999999999999999999987542211  0   


Q ss_pred             -ccc-------cccCcccccccCCcee-----EEeeCCCC----CeEEEecccccCCCCCCcee---EeCCCCc
Q psy7114          73 -NIY-------KSVSLSDMEHKGESQM-----FTYPCRCG----AEFCIEEQDTEGDGSDDNIL---IACDTCS  126 (134)
Q Consensus        73 -~~~-------~~~~~~~~~~~~~~~~-----~~~~crcg----~~~~v~~~~l~~g~~~~~~~---v~C~~Cs  126 (134)
                       ...       ...++++.+|++.++.     .....+-|    -...|+++|++.|.+..+.+   +.|+.|+
T Consensus        84 ~~~~~~~~~~~~~~d~f~~ffgg~~~~~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~  157 (372)
T PRK14286         84 GAYTDFSDIFGDFGDIFGDFFGGGRGGGSGGGRRSGPQRGSDLRYNLEVSLEDAALGREYKIEIPRLESCVDCN  157 (372)
T ss_pred             CCcccccccccchhhHHHHhhCCCccCCCcccccCCCCCCCCeeEEEEEEHHHHhCCeeEEEEeeccccCCCCc
Confidence             000       0001222234321100     00111223    36788999999997766543   6666664

>PRK14298 chaperone protein DnaJ; Provisional

Probab=99.89  E-value=8.5e-24  Score=168.51  Aligned_cols=126  Identities=27%  Similarity=0.407  Sum_probs=88.5

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHHHHHHhccChHHHHHHHHHhhhhhhcc-cc---c
Q psy7114           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKN--SEHQEMFLKINEAWNILKDEKERKLYESQLLSQQQTH-MN---I   74 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk~--~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~-~~---~   74 (134)
                      +|||+||||+++|+.++||+|||+|++++|||++  +.+.++|++|++||++|+||.+|+.||+++....... +.   +
T Consensus         5 ~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~~~~   84 (377)
T PRK14298          5 RDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGIDNQYSAEDIF   84 (377)
T ss_pred             CCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcCccccccccCccccc
Confidence            4899999999999999999999999999999993  6678999999999999999999999999986532211 00   0


Q ss_pred             -----ccccCcccccccCCceeEEeeCCCC----CeEEEecccccCCCCCCcee---EeCCCCc
Q psy7114          75 -----YKSVSLSDMEHKGESQMFTYPCRCG----AEFCIEEQDTEGDGSDDNIL---IACDTCS  126 (134)
Q Consensus        75 -----~~~~~~~~~~~~~~~~~~~~~crcg----~~~~v~~~~l~~g~~~~~~~---v~C~~Cs  126 (134)
                           ....++++.+|++.+..-....+-|    -...|+++|++.|.+..+.+   +.|+.|.
T Consensus        85 ~~~~~~~~~d~f~~~Fgg~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~  148 (377)
T PRK14298         85 RGADFGGFGDIFEMFFGGGGRRGRMGPRRGSDLRYDLYITLEEAAFGVRKDIDVPRAERCSTCS  148 (377)
T ss_pred             ccCCcCcchhhhHhhhcCCCccCCCCCCCCCCEEEEEEEEHHHhhCCeEEEEEEEeeccCCCCC
Confidence                 0011222323432111000112233    37788999999997665543   6666664

>PRK14287 chaperone protein DnaJ; Provisional

Probab=99.89  E-value=9.8e-24  Score=167.85  Aligned_cols=126  Identities=22%  Similarity=0.375  Sum_probs=89.0

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHHHHHHhccChHHHHHHHHHhhhhhhcc--c-c--
Q psy7114           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKN--SEHQEMFLKINEAWNILKDEKERKLYESQLLSQQQTH--M-N--   73 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk~--~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~--~-~--   73 (134)
                      +|||+||||+++||.++||+|||+|++++|||++  +.+.++|++|++||++|+||.+|+.||+++.......  + .  
T Consensus         4 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~~~~~~~~~~~   83 (371)
T PRK14287          4 RDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDPNQGFGGGGAG   83 (371)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCcccccccCCCCCc
Confidence            4899999999999999999999999999999994  6678999999999999999999999999987532211  0 0  


Q ss_pred             -cccccCcccccccCCceeE-EeeCCCC----CeEEEecccccCCCCCCcee---EeCCCCc
Q psy7114          74 -IYKSVSLSDMEHKGESQMF-TYPCRCG----AEFCIEEQDTEGDGSDDNIL---IACDTCS  126 (134)
Q Consensus        74 -~~~~~~~~~~~~~~~~~~~-~~~crcg----~~~~v~~~~l~~g~~~~~~~---v~C~~Cs  126 (134)
                       +....++++.+|++.+... ....+-|    -...|+++|++.|....+.+   +.|+.|+
T Consensus        84 ~f~~~~d~f~~~fgg~~~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~  145 (371)
T PRK14287         84 DFGGFSDIFDMFFGGGGGRRNPNAPRQGADLQYTMTLEFKEAVFGKETEIEIPREETCGTCH  145 (371)
T ss_pred             cccchHHHHHhhhccccCCCCCCCCCCCCCEEEEEEEEHHHhcCCeEEEEEEeeeccCCCCC
Confidence             0011122333344221110 0112233    36778999999997665533   6777775

>PRK14276 chaperone protein DnaJ; Provisional

Probab=99.88  E-value=2.7e-23  Score=165.75  Aligned_cols=126  Identities=20%  Similarity=0.306  Sum_probs=87.5

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHHHhccChHHHHHHHHHhhhhhhcc--c---c
Q psy7114           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK--NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQQTH--M---N   73 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk--~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~--~---~   73 (134)
                      +|||+||||+++||.++||+|||+|++++|||+  .+.+.++|++|++||++|+||.+|+.||.++.......  +   .
T Consensus         4 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~~~~~~~~~~~   83 (380)
T PRK14276          4 TEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGANGGFGGGAGG   83 (380)
T ss_pred             CCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCccccCCCCCCCCC
Confidence            489999999999999999999999999999999  45678999999999999999999999999987532110  0   0


Q ss_pred             ---cc--c-ccCccc---ccccCCcee-EEeeCCCC----CeEEEecccccCCCCCCcee---EeCCCCc
Q psy7114          74 ---IY--K-SVSLSD---MEHKGESQM-FTYPCRCG----AEFCIEEQDTEGDGSDDNIL---IACDTCS  126 (134)
Q Consensus        74 ---~~--~-~~~~~~---~~~~~~~~~-~~~~crcg----~~~~v~~~~l~~g~~~~~~~---v~C~~Cs  126 (134)
                         +.  . ..++.+   .+|++.+.. .....+-|    -...|+++|++.|.+..+.+   +.|+.|+
T Consensus        84 ~~~~~~~~~~~~~~d~f~~~fgg~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~  153 (380)
T PRK14276         84 FGGFDGSGGFGGFEDIFSSFFGGGGARRNPNAPRQGDDLQYRVNLDFEEAIFGKEKEVSYNREATCHTCN  153 (380)
T ss_pred             CCCccccccccchhhHHHHHhCccccccCcCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeccccCCCCc
Confidence               00  0 011222   223321110 00112233    26788999999997665543   6676663

>PRK14280 chaperone protein DnaJ; Provisional

Probab=99.88  E-value=4.7e-23  Score=164.23  Aligned_cols=126  Identities=23%  Similarity=0.362  Sum_probs=88.7

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHHHhccChHHHHHHHHHhhhhhhcc-c--c--
Q psy7114           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK--NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQQTH-M--N--   73 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk--~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~-~--~--   73 (134)
                      +|||+||||+++|+.++||+|||+|++++|||+  .+.+.++|++|++||++|+||.+|+.||.++......+ +  .  
T Consensus         4 ~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~~~~   83 (376)
T PRK14280          4 RDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPNQGFGGGGFG   83 (376)
T ss_pred             CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcCccccccCcCCCCCC
Confidence            489999999999999999999999999999999  45688999999999999999999999999987542211 0  0  


Q ss_pred             ---cccccCccc---ccccCCcee-EEeeCCCC----CeEEEecccccCCCCCCcee---EeCCCCc
Q psy7114          74 ---IYKSVSLSD---MEHKGESQM-FTYPCRCG----AEFCIEEQDTEGDGSDDNIL---IACDTCS  126 (134)
Q Consensus        74 ---~~~~~~~~~---~~~~~~~~~-~~~~crcg----~~~~v~~~~l~~g~~~~~~~---v~C~~Cs  126 (134)
                         +....++.+   .+|++.+.. .....+-|    -...|+++|++.|.+..+.+   +.|+.|+
T Consensus        84 ~~~~~~~~~~~d~f~~~fgg~~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~  150 (376)
T PRK14280         84 GGDFGGGFGFEDIFSSFFGGGGRRRDPNAPRQGADLQYTMTLTFEEAVFGKEKEIEIPKEETCDTCH  150 (376)
T ss_pred             CCCccccccchhhHHHHhCCccccCcccccccccCEEEEEEEEHHHHhCCceeEEEEeeeccCCCCC
Confidence               000001222   233321110 00112233    37788999999997766543   6677664

>PRK14285 chaperone protein DnaJ; Provisional

Probab=99.88  E-value=3.9e-23  Score=164.15  Aligned_cols=126  Identities=23%  Similarity=0.372  Sum_probs=87.2

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHHHhccChHHHHHHHHHhhhhhhcc-c--cc
Q psy7114           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK---NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQQTH-M--NI   74 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk---~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~-~--~~   74 (134)
                      +|||+||||+++||.++||+|||+|++++|||+   .+.+.++|++|++||++|+||.+|..||.++....... +  ..
T Consensus         3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~~~~~~~~~~   82 (365)
T PRK14285          3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAFEGGGGFEGF   82 (365)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchhccCCCcccc
Confidence            489999999999999999999999999999999   35678999999999999999999999999987532111 0  00


Q ss_pred             -c--cc-----cCccc---ccccCCceeE-EeeCCCC----CeEEEecccccCCCCCCcee---EeCCCCc
Q psy7114          75 -Y--KS-----VSLSD---MEHKGESQMF-TYPCRCG----AEFCIEEQDTEGDGSDDNIL---IACDTCS  126 (134)
Q Consensus        75 -~--~~-----~~~~~---~~~~~~~~~~-~~~crcg----~~~~v~~~~l~~g~~~~~~~---v~C~~Cs  126 (134)
                       .  ..     .++.+   .+|++..+.. ....+-|    -...|+++|++.|.+..+.+   +.|+.|+
T Consensus        83 ~~g~~~~~~~~~~~~d~f~~~fgg~~~~~~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~  153 (365)
T PRK14285         83 SGGFSGFSDIFEDFGDIFDSFFTGNRGQDKNRKHEKGQDLTYQIEISLEDAYLGYKNNINITRNMLCESCL  153 (365)
T ss_pred             CCCccccccccccHHHHHHHhhcCCcCCCCCcCCCCCCCEEEEEEEEHHHhhCCeEEEEEeeecccCCCCC
Confidence             0  00     01112   1233211100 0112223    36788999999997665543   6676664

>PRK14278 chaperone protein DnaJ; Provisional

Probab=99.88  E-value=6.2e-23  Score=163.63  Aligned_cols=126  Identities=20%  Similarity=0.299  Sum_probs=86.9

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHHHhccChHHHHHHHHHhhhhhhcc---cccc
Q psy7114           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK--NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQQTH---MNIY   75 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk--~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~---~~~~   75 (134)
                      +|||+||||+++||.++||+|||+|++++|||+  .+.+.++|++|++||++|+||.+|+.||.++.......   +...
T Consensus         3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~~~~~~~~~~g~~   82 (378)
T PRK14278          3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDPLESAGGGGGGFG   82 (378)
T ss_pred             CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCccccccCCCCCCC
Confidence            489999999999999999999999999999999  45578899999999999999999999999886422110   0000


Q ss_pred             ----cccCcccccccCCcee--EEeeCCCC----CeEEEecccccCCCCCCcee---EeCCCCc
Q psy7114          76 ----KSVSLSDMEHKGESQM--FTYPCRCG----AEFCIEEQDTEGDGSDDNIL---IACDTCS  126 (134)
Q Consensus        76 ----~~~~~~~~~~~~~~~~--~~~~crcg----~~~~v~~~~l~~g~~~~~~~---v~C~~Cs  126 (134)
                          ...++++.+|++.+..  .....+-|    -...|+++|++.|.+..+.+   +.|+.|+
T Consensus        83 ~~f~~~~d~f~~ffgg~g~~~~~~~~~~~g~d~~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~  146 (378)
T PRK14278         83 GGFGGLGDVFEAFFGGGAASRGPRGRVRPGSDSLLRMRLDLEECATGVTKQVTVDTAVLCDRCH  146 (378)
T ss_pred             cCcCchhHHHHHHhCCCCCCCCCccCCCCCCCeEEEEEEEHHHhcCCeEEEEEEEeeccCCCCc
Confidence                0011222233321100  00011223    36788999999997665533   5666664

>PRK14282 chaperone protein DnaJ; Provisional

Probab=99.88  E-value=9.9e-23  Score=162.03  Aligned_cols=67  Identities=36%  Similarity=0.634  Sum_probs=62.3

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHHHHHHhccChHHHHHHHHHhhhh
Q psy7114           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKN----SEHQEMFLKINEAWNILKDEKERKLYESQLLSQ   67 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk~----~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   67 (134)
                      +|||+||||+++||.++||+|||+|++++|||++    +.+.++|++|++||++|+||.+|+.||.++...
T Consensus         4 ~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~   74 (369)
T PRK14282          4 KDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVG   74 (369)
T ss_pred             CChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCccc
Confidence            4899999999999999999999999999999993    457899999999999999999999999988754

>PRK14297 chaperone protein DnaJ; Provisional

Probab=99.87  E-value=1.1e-22  Score=162.24  Aligned_cols=126  Identities=24%  Similarity=0.344  Sum_probs=87.6

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHHHHhccChHHHHHHHHHhhhhhhcc-c----
Q psy7114           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKN---SEHQEMFLKINEAWNILKDEKERKLYESQLLSQQQTH-M----   72 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk~---~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~-~----   72 (134)
                      +|||+||||+++|+.++||+|||+|++++|||++   +.+.++|++|++||++|+||.+|+.||+++....... +    
T Consensus         4 ~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~~~~~~~~~~   83 (380)
T PRK14297          4 KDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFNGAGGFGSG   83 (380)
T ss_pred             CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcccccccCCCCCC
Confidence            4899999999999999999999999999999993   5688999999999999999999999999987542110 0    


Q ss_pred             ccc----c----ccCcccccccCC--ce-eEEeeCCCC----CeEEEecccccCCCCCCcee---EeCCCCc
Q psy7114          73 NIY----K----SVSLSDMEHKGE--SQ-MFTYPCRCG----AEFCIEEQDTEGDGSDDNIL---IACDTCS  126 (134)
Q Consensus        73 ~~~----~----~~~~~~~~~~~~--~~-~~~~~crcg----~~~~v~~~~l~~g~~~~~~~---v~C~~Cs  126 (134)
                      ...    .    ..++++.+|++.  +. .-....+-|    -...|+++|++.|.+..+.+   +.|+.|+
T Consensus        84 ~~~~~~~~~~~~~~d~f~~~fgg~~g~~~~~~~~~~kg~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~  155 (380)
T PRK14297         84 GFGGFDFSDMGGFGDIFDSFFGGGFGSSSRRRNGPQRGADIEYTINLTFEEAVFGVEKEISVTRNENCETCN  155 (380)
T ss_pred             CCCCcCcccccchhHHHHHHhccCccccccccCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeeeccCCCcc
Confidence            000    0    001122233321  00 000112223    36888999999997666543   5666653

>PRK14284 chaperone protein DnaJ; Provisional

Probab=99.87  E-value=2.6e-22  Score=160.66  Aligned_cols=67  Identities=34%  Similarity=0.645  Sum_probs=62.8

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHHHhccChHHHHHHHHHhhhh
Q psy7114           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK---NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQ   67 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk---~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   67 (134)
                      +|||+||||+++||.++||+|||+|++++|||+   .+.+.++|++|++||++|+||.+|+.||+++...
T Consensus         1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g   70 (391)
T PRK14284          1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDG   70 (391)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhccccc
Confidence            689999999999999999999999999999999   3568899999999999999999999999998753

>PRK10767 chaperone protein DnaJ; Provisional

Probab=99.87  E-value=2.2e-22  Score=160.15  Aligned_cols=126  Identities=25%  Similarity=0.428  Sum_probs=86.8

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHHHhccChHHHHHHHHHhhhhhhccc---cc
Q psy7114           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK---NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQQTHM---NI   74 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk---~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~~---~~   74 (134)
                      +|||+||||+++||.++||+|||+|++++|||+   .+.+.++|++|++||++|+||.+|+.||.++........   ..
T Consensus         4 ~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~~~~~~~~~   83 (371)
T PRK10767          4 RDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFEQGGGGGGF   83 (371)
T ss_pred             CChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhccccccccCCCCCCC
Confidence            489999999999999999999999999999999   356789999999999999999999999998875332110   00


Q ss_pred             cc--c-cC-cccc---cccCCceeEEeeCCCC----CeEEEecccccCCCCCCcee---EeCCCCc
Q psy7114          75 YK--S-VS-LSDM---EHKGESQMFTYPCRCG----AEFCIEEQDTEGDGSDDNIL---IACDTCS  126 (134)
Q Consensus        75 ~~--~-~~-~~~~---~~~~~~~~~~~~crcg----~~~~v~~~~l~~g~~~~~~~---v~C~~Cs  126 (134)
                      ..  . .+ +.++   +|++.++.-....+-|    -...|+++|++.|....+.+   +.|+.|.
T Consensus        84 ~~~~~~~~~f~~~f~~~fgg~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~v~~~r~~~C~~C~  149 (371)
T PRK10767         84 GGGGGFGDIFGDIFGDIFGGGRGGGRQRARRGADLRYNMEITLEEAVRGVTKEIRIPTLVTCDTCH  149 (371)
T ss_pred             CCccccccchhhhhhhhccCCccccCCCCCCCCCeEEEEEeehHHhhCCeeEEEeeeecccCCCCC
Confidence            00  0 01 1122   1221100000112223    35778999999997665543   6676663

>PRK14283 chaperone protein DnaJ; Provisional

Probab=99.87  E-value=3.7e-22  Score=159.16  Aligned_cols=67  Identities=33%  Similarity=0.581  Sum_probs=62.9

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHHHHHHhccChHHHHHHHHHhhhh
Q psy7114           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKN--SEHQEMFLKINEAWNILKDEKERKLYESQLLSQ   67 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk~--~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   67 (134)
                      +|||+||||+++||.+|||+|||+|++++|||++  +.+.++|++|++||++|+||.+|+.||+++...
T Consensus         5 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g   73 (378)
T PRK14283          5 RDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAG   73 (378)
T ss_pred             CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhhcccc
Confidence            4899999999999999999999999999999994  678999999999999999999999999988653

>PRK14277 chaperone protein DnaJ; Provisional

Probab=99.87  E-value=2.1e-22  Score=160.94  Aligned_cols=67  Identities=40%  Similarity=0.631  Sum_probs=62.4

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHHHhccChHHHHHHHHHhhhh
Q psy7114           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK---NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQ   67 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk---~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   67 (134)
                      +|||+||||+++||.++||+|||+|++++|||+   .+.+.++|++|++||++|+||.+|+.||.++...
T Consensus         5 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~   74 (386)
T PRK14277          5 KDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAA   74 (386)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhcccc
Confidence            489999999999999999999999999999999   3567889999999999999999999999988653

>PRK14294 chaperone protein DnaJ; Provisional

Probab=99.87  E-value=2.7e-22  Score=159.40  Aligned_cols=126  Identities=25%  Similarity=0.430  Sum_probs=86.9

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHHHhccChHHHHHHHHHhhhhhhcc---c--
Q psy7114           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK---NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQQTH---M--   72 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk---~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~---~--   72 (134)
                      +|||+||||+++||.++||+|||+|++++|||+   .+.+.++|++|++||++|+||.+|+.||.++.......   +  
T Consensus         4 ~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~~~~~~~~~~   83 (366)
T PRK14294          4 RDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGLSGTGFSGFS   83 (366)
T ss_pred             CChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccccccCCCCCCcC
Confidence            589999999999999999999999999999999   35678999999999999999999999999987542211   0  


Q ss_pred             ccccc-cCcccc---ccc-CCc-eeE-EeeCCCC----CeEEEecccccCCCCCCcee---EeCCCCc
Q psy7114          73 NIYKS-VSLSDM---EHK-GES-QMF-TYPCRCG----AEFCIEEQDTEGDGSDDNIL---IACDTCS  126 (134)
Q Consensus        73 ~~~~~-~~~~~~---~~~-~~~-~~~-~~~crcg----~~~~v~~~~l~~g~~~~~~~---v~C~~Cs  126 (134)
                      .+... .++.++   +|+ ++. +.. ....+-|    -...|+++|++.|.+..+.+   +.|+.|+
T Consensus        84 ~~~~~~~~~~d~f~~~fg~g~~~~~~~~~~~~~g~d~~~~l~lslee~~~G~~~~i~~~r~~~C~~C~  151 (366)
T PRK14294         84 GFDDIFSSFGDIFEDFFGFGGGRRGRSRTAVRAGADLRYDLTLPFLEAAFGTEKEIRIQKLETCEECH  151 (366)
T ss_pred             ccccchhhhhhhHHHhhccCCCcCCcccCCCCCCCCceEEEEeeHHHhcCCeEEEEEeeecccCCCCC
Confidence            00000 112222   233 111 000 0112223    35788999999997665533   5666553

>PRK14301 chaperone protein DnaJ; Provisional

Probab=99.87  E-value=1.4e-22  Score=161.29  Aligned_cols=126  Identities=21%  Similarity=0.383  Sum_probs=86.6

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHHHhccChHHHHHHHHHhhhhhhcc---ccc
Q psy7114           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK---NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQQTH---MNI   74 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk---~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~---~~~   74 (134)
                      +|||+||||+++||.++||+|||+|++++|||+   .+.+.++|++|++||+||+||.+|+.||.++.......   +.+
T Consensus         4 ~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~~~~~~~~g~   83 (373)
T PRK14301          4 RDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGVNGNGGFGGF   83 (373)
T ss_pred             CChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccccccccCCCCCCc
Confidence            489999999999999999999999999999999   35678899999999999999999999999987532211   111


Q ss_pred             ccc----cCcccc---cccCCce--eEEeeCCCC----CeEEEecccccCCCCCCcee---EeCCCCc
Q psy7114          75 YKS----VSLSDM---EHKGESQ--MFTYPCRCG----AEFCIEEQDTEGDGSDDNIL---IACDTCS  126 (134)
Q Consensus        75 ~~~----~~~~~~---~~~~~~~--~~~~~crcg----~~~~v~~~~l~~g~~~~~~~---v~C~~Cs  126 (134)
                      ...    ..+.++   +|+.++.  ......+-|    -...|+++|++.|.+..+.+   +.|+.|+
T Consensus        84 ~~~~~~~~~f~d~f~~~fg~g~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~  151 (373)
T PRK14301         84 SSAEDIFSHFSDIFGDLFGFSGGGSRRGPRPQAGSDLRYNLTVSFRQAAKGDEVTLRIPKNVTCDDCG  151 (373)
T ss_pred             ccccccccchHHHHHHHhhccCcccccCCCCCCCCCEEEEEeccHHHHhCCceEEEEeeecccCCCCC
Confidence            100    011121   1221110  000112223    25778999999997665543   6666664

>PRK14295 chaperone protein DnaJ; Provisional

Probab=99.87  E-value=4.2e-22  Score=159.36  Aligned_cols=66  Identities=35%  Similarity=0.605  Sum_probs=61.3

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHHHhccChHHHHHHHH----Hhhh
Q psy7114           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK---NSEHQEMFLKINEAWNILKDEKERKLYES----QLLS   66 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk---~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~----~~~~   66 (134)
                      +|||+||||+++||.++||+|||+|++++|||+   .+.+.++|++|++||++|+||.+|+.||+    ++..
T Consensus         9 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~   81 (389)
T PRK14295          9 KDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNG   81 (389)
T ss_pred             cCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhccc
Confidence            489999999999999999999999999999999   34678999999999999999999999998    6654

>PRK14291 chaperone protein DnaJ; Provisional

Probab=99.86  E-value=4e-22  Score=159.16  Aligned_cols=67  Identities=45%  Similarity=0.682  Sum_probs=62.9

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHHHHHHhccChHHHHHHHHHhhhh
Q psy7114           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKN--SEHQEMFLKINEAWNILKDEKERKLYESQLLSQ   67 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk~--~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   67 (134)
                      +|||+||||+++|+.++||+|||+|++++|||++  +.+.++|++|++||++|+||.+|+.||.++...
T Consensus         3 ~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~   71 (382)
T PRK14291          3 KDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAA   71 (382)
T ss_pred             CCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhcccc
Confidence            5899999999999999999999999999999994  567899999999999999999999999998754

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=99.85  E-value=8.5e-22  Score=155.89  Aligned_cols=125  Identities=26%  Similarity=0.351  Sum_probs=87.1

Q ss_pred             CccccccCCCCCCHHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHHHHHHhccChHHHHHHHHHhhhhhhcc-c----cc
Q psy7114           2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDKN--SEHQEMFLKINEAWNILKDEKERKLYESQLLSQQQTH-M----NI   74 (134)
Q Consensus         2 ~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk~--~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~-~----~~   74 (134)
                      |||+||||+++|+.++||+|||+|++++|||+.  +.+.++|++|++||++|+|+.+|..||.++....... +    ..
T Consensus         1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~~~~~   80 (354)
T TIGR02349         1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFNGGGGGGGGGF   80 (354)
T ss_pred             ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhcccccccccCcCCCCCc
Confidence            799999999999999999999999999999994  5678999999999999999999999999887543211 0    00


Q ss_pred             c--------cccCcccccccCCce-eE--EeeCCCC----CeEEEecccccCCCCCCcee---EeCCCCc
Q psy7114          75 Y--------KSVSLSDMEHKGESQ-MF--TYPCRCG----AEFCIEEQDTEGDGSDDNIL---IACDTCS  126 (134)
Q Consensus        75 ~--------~~~~~~~~~~~~~~~-~~--~~~crcg----~~~~v~~~~l~~g~~~~~~~---v~C~~Cs  126 (134)
                      .        ...++.+.+|++..+ ..  ....+-|    -.+.|+++|++.|.+..+.+   +.|+.|+
T Consensus        81 ~~~~~~~~~~~~~~f~~~fg~~~g~~~~~~~~~~~~~d~~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~  150 (354)
T TIGR02349        81 NGFDIGFFGDFGDIFGDFFGGGGGSGRRRRSGPRRGEDLRYDLELTFEEAVFGVEKEIEIPRKESCETCH  150 (354)
T ss_pred             CCccccCcCchhhhHHHHhccCcccCccccCCCCCCCCeEEEEEEEHHHHhCCeeEEEEeecCCcCCCCC
Confidence            0        001122223332110 00  0112223    36788999999997665543   6666664

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14279 chaperone protein DnaJ; Provisional

Probab=99.85  E-value=1.7e-21  Score=156.04  Aligned_cols=65  Identities=29%  Similarity=0.529  Sum_probs=61.6

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHHHhccChHHHHHHHHHhh
Q psy7114           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK---NSEHQEMFLKINEAWNILKDEKERKLYESQLL   65 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk---~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~   65 (134)
                      +|||+||||+++|+.++||+|||+|++++|||+   .+.+.++|++|++||++|+||++|+.||+++.
T Consensus         9 ~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~   76 (392)
T PRK14279          9 KDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRR   76 (392)
T ss_pred             cCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhh
Confidence            599999999999999999999999999999999   34688999999999999999999999999975

>PRK14292 chaperone protein DnaJ; Provisional

Probab=99.84  E-value=2e-21  Score=154.61  Aligned_cols=126  Identities=25%  Similarity=0.381  Sum_probs=88.0

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHHHhccChHHHHHHHHHhhhhhhc--c-cccc
Q psy7114           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK--NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQQT--H-MNIY   75 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk--~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~--~-~~~~   75 (134)
                      +|||+||||+++||.++||+|||+|++++|||+  .+.+.++|+.|++||++|+||.+|+.||.++......  . ++..
T Consensus         2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~~~~~~~~~~~~   81 (371)
T PRK14292          2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAPGAGMPGGDPFG   81 (371)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcccccccCCcccC
Confidence            699999999999999999999999999999999  4568899999999999999999999999998753211  0 0100


Q ss_pred             ----cccCcccccccCCc--eeEE-eeCCCC----CeEEEecccccCCCCCCce---eEeCCCCc
Q psy7114          76 ----KSVSLSDMEHKGES--QMFT-YPCRCG----AEFCIEEQDTEGDGSDDNI---LIACDTCS  126 (134)
Q Consensus        76 ----~~~~~~~~~~~~~~--~~~~-~~crcg----~~~~v~~~~l~~g~~~~~~---~v~C~~Cs  126 (134)
                          +..++++.+|++..  .... ...+-|    -...++++|++.|.+....   .+.|+.|.
T Consensus        82 ~~~~d~~d~f~~~fg~~~~~~~~~~~~~~~g~d~~~~l~~sLee~~~G~~~~v~~~r~~~C~~C~  146 (371)
T PRK14292         82 GMGFDPMDIFEQLFGGAGFGGGRGRRGPARGDDLETEARITLEQARAGEEVEVEVDRLTECEHCH  146 (371)
T ss_pred             ccCCChHHHHHHhhCCCCcCCCCCcccccCCCCeEEEEeccHHHHcCCeEEEEEEEeeecCCCCc
Confidence                00112222233211  0000 111223    3667789999999766554   37788874

>PRK14289 chaperone protein DnaJ; Provisional

Probab=99.84  E-value=7e-21  Score=152.20  Aligned_cols=67  Identities=31%  Similarity=0.594  Sum_probs=62.7

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHHHhccChHHHHHHHHHhhhh
Q psy7114           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK---NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQ   67 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk---~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   67 (134)
                      +|||+||||+++|+.+|||+|||+|++++|||+   .+.+.++|++|++||++|+||.+|+.||.++...
T Consensus         5 ~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~   74 (386)
T PRK14289          5 RDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAG   74 (386)
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccc
Confidence            489999999999999999999999999999999   3568899999999999999999999999998753

>PRK14300 chaperone protein DnaJ; Provisional

Probab=99.84  E-value=3.6e-21  Score=153.27  Aligned_cols=67  Identities=28%  Similarity=0.553  Sum_probs=62.3

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHHHhccChHHHHHHHHHhhhh
Q psy7114           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK--NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQ   67 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk--~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   67 (134)
                      +|||+||||+++||.++||+|||++++++|||+  .+.+.++|++|++||++|+|+.+|..||.++...
T Consensus         3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~   71 (372)
T PRK14300          3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDA   71 (372)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhccccc
Confidence            589999999999999999999999999999999  3457889999999999999999999999988653

>PRK14290 chaperone protein DnaJ; Provisional

Probab=99.83  E-value=4.9e-21  Score=152.14  Aligned_cols=66  Identities=32%  Similarity=0.608  Sum_probs=61.8

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHHHHHHhccChHHHHHHHHHhhh
Q psy7114           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKN----SEHQEMFLKINEAWNILKDEKERKLYESQLLS   66 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk~----~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   66 (134)
                      +|||+||||+++||.++||+|||+|++++|||++    ..+.++|++|++||++|+||.+|..||.++..
T Consensus         3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~   72 (365)
T PRK14290          3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTV   72 (365)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCc
Confidence            4899999999999999999999999999999993    25789999999999999999999999998875

>PRK14293 chaperone protein DnaJ; Provisional

Probab=99.83  E-value=9.8e-21  Score=150.84  Aligned_cols=126  Identities=21%  Similarity=0.338  Sum_probs=86.7

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHHHhccChHHHHHHHHHhhhhhhcc-c--ccc
Q psy7114           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK--NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQQTH-M--NIY   75 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk--~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~-~--~~~   75 (134)
                      +|||+||||+++||.++||+|||+|++++|||+  .+.+.++|+.|++||++|+||.+|+.||.++......+ +  ...
T Consensus         3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~~~~~~~~~~~   82 (374)
T PRK14293          3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFGEAGVSGAAGFPDMG   82 (374)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhccccccccCCCcCCcc
Confidence            489999999999999999999999999999999  45688999999999999999999999999887532111 0  000


Q ss_pred             ccc---CcccccccC--C-ce---eE-EeeCCCC----CeEEEecccccCCCCCCcee---EeCCCCc
Q psy7114          76 KSV---SLSDMEHKG--E-SQ---MF-TYPCRCG----AEFCIEEQDTEGDGSDDNIL---IACDTCS  126 (134)
Q Consensus        76 ~~~---~~~~~~~~~--~-~~---~~-~~~crcg----~~~~v~~~~l~~g~~~~~~~---v~C~~Cs  126 (134)
                      ...   ++.+.+|++  + +.   .. ....+-|    -...|+++|++.|......+   +.|+.|.
T Consensus        83 ~~~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~kg~di~~~l~vsLee~~~G~~k~i~~~r~~~C~~C~  150 (374)
T PRK14293         83 DMGGFADIFETFFSGFGGAGGQGGRRRRRGPQRGDDLRYDLKLDFREAIFGGEKEIRIPHLETCETCR  150 (374)
T ss_pred             cccchHHHHHHHhcccCCCCCCCccccccCccCCCCeEEEEEeeHHHHhCCceEEEEeeccccCCCCC
Confidence            000   111112321  0 00   00 0011223    26778999999997665543   6777773

>KOG0716|consensus

Probab=99.83  E-value=5e-21  Score=144.08  Aligned_cols=70  Identities=36%  Similarity=0.608  Sum_probs=65.0

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHHHhccChHHHHHHHHHhhhhhhc
Q psy7114           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK---NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQQT   70 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk---~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~   70 (134)
                      +++|+|||++++|+.++||++||+|++++|||+   ++++.++|++||+||+||+||.+|..||.++......
T Consensus        31 ~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~l  103 (279)
T KOG0716|consen   31 LDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGLKL  103 (279)
T ss_pred             hHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHHH
Confidence            478999999999999999999999999999999   5678999999999999999999999999998876543

>PRK14299 chaperone protein DnaJ; Provisional

Probab=99.82  E-value=1.8e-20  Score=144.91  Aligned_cols=66  Identities=35%  Similarity=0.626  Sum_probs=62.5

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHHHhccChHHHHHHHHHhhh
Q psy7114           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK--NSEHQEMFLKINEAWNILKDEKERKLYESQLLS   66 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk--~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   66 (134)
                      +|||+||||+++||.++||+|||+|++++|||+  .+.+.++|++|++||++|+||.+|+.||.++..
T Consensus         4 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~   71 (291)
T PRK14299          4 KDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTT   71 (291)
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCc
Confidence            489999999999999999999999999999999  367889999999999999999999999998875

>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []

Probab=99.81  E-value=4.5e-20  Score=112.42  Aligned_cols=60  Identities=45%  Similarity=0.763  Sum_probs=56.4

Q ss_pred             CccccccCCCCCCHHHHHHHHHHHHHHhCCCC--CH--HHHHHHHHHHHHHHhccChHHHHHHH
Q psy7114           2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDK--NS--EHQEMFLKINEAWNILKDEKERKLYE   61 (134)
Q Consensus         2 ~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk--~~--~~~~~f~~i~~Ay~~L~d~~~R~~Yd   61 (134)
                      |||+||||+++++.++||++|+++++++|||+  ..  .+.+.|..|++||++|++|.+|+.||
T Consensus         1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD   64 (64)
T PF00226_consen    1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD   64 (64)
T ss_dssp             HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred             ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence            68999999999999999999999999999999  22  46799999999999999999999998

Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....

>KOG0717|consensus

Probab=99.81  E-value=1.6e-20  Score=149.67  Aligned_cols=71  Identities=34%  Similarity=0.558  Sum_probs=65.8

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCC----CHHHHHHHHHHHHHHHhccChHHHHHHHHHhhhhhhcc
Q psy7114           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK----NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQQTH   71 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk----~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~   71 (134)
                      |.||+||||..+|+..+||++||+|||++||||    .+.+.+.|+.|+.||+|||||+.|.+||.+..+.....
T Consensus         8 ~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil~~~   82 (508)
T KOG0717|consen    8 RCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQILRGK   82 (508)
T ss_pred             hHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHhcCC
Confidence            469999999999999999999999999999999    45789999999999999999999999999998776544

>KOG0715|consensus

Probab=99.80  E-value=1.1e-19  Score=140.20  Aligned_cols=66  Identities=39%  Similarity=0.663  Sum_probs=63.5

Q ss_pred             CccccccCCCCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHHHhccChHHHHHHHHHhhhh
Q psy7114           2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDK--NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQ   67 (134)
Q Consensus         2 ~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk--~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   67 (134)
                      |||+||||+++|+..|||+||++|++++|||.  .+.+.++|++|.+||++|+|+.+|..||..+...
T Consensus        44 d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~  111 (288)
T KOG0715|consen   44 DYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLEQ  111 (288)
T ss_pred             chhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc
Confidence            79999999999999999999999999999999  6689999999999999999999999999998875

>PRK14281 chaperone protein DnaJ; Provisional

Probab=99.80  E-value=6.6e-20  Score=147.08  Aligned_cols=67  Identities=36%  Similarity=0.665  Sum_probs=62.5

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHHHhccChHHHHHHHHHhhhh
Q psy7114           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK---NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQ   67 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk---~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   67 (134)
                      +|||+||||+++|+.++||+|||+|++++|||+   .+.+.++|++|++||++|+||.+|+.||.++...
T Consensus         3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~   72 (397)
T PRK14281          3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAG   72 (397)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchh
Confidence            489999999999999999999999999999999   3567899999999999999999999999998754

>KOG0718|consensus

Probab=99.79  E-value=1e-19  Score=145.36  Aligned_cols=69  Identities=30%  Similarity=0.544  Sum_probs=64.8

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCC------CHHHHHHHHHHHHHHHhccChHHHHHHHHHhhhhhh
Q psy7114           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK------NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQQ   69 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk------~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~   69 (134)
                      .++|.+|||+++||.+|||+|||++++.+||||      ...|++.|+.|.+||+||+||++|..||.+|.++..
T Consensus         9 ~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~   83 (546)
T KOG0718|consen    9 IELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLK   83 (546)
T ss_pred             hhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccc
Confidence            379999999999999999999999999999999      567899999999999999999999999999997664

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=99.78  E-value=4e-19  Score=138.29  Aligned_cols=65  Identities=31%  Similarity=0.619  Sum_probs=61.3

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHHHhccChHHHHHHHHHhh
Q psy7114           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK--NSEHQEMFLKINEAWNILKDEKERKLYESQLL   65 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk--~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~   65 (134)
                      +|||+||||+++||.++||+|||+|++++|||+  .+.+.++|++|++||++|+||.+|+.||.++.
T Consensus         4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~   70 (306)
T PRK10266          4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQ   70 (306)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence            589999999999999999999999999999999  35688999999999999999999999999874

>KOG0691|consensus

Probab=99.77  E-value=9.2e-19  Score=134.93  Aligned_cols=71  Identities=31%  Similarity=0.579  Sum_probs=66.6

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHHHhccChHHHHHHHHHhhhhhhcc
Q psy7114           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK---NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQQTH   71 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk---~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~   71 (134)
                      .|||+||||+++|+..+|++||++.++++||||   +|.+.++|+.+.+||+||+|+..|..||..+.....+.
T Consensus         5 ~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~~   78 (296)
T KOG0691|consen    5 TDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSAQ   78 (296)
T ss_pred             chHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccch
Confidence            489999999999999999999999999999999   77899999999999999999999999999999776543

>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional

Probab=99.76  E-value=1.1e-18  Score=149.58  Aligned_cols=68  Identities=35%  Similarity=0.509  Sum_probs=63.1

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHHHhccChHHHHHHHHHhhhhh
Q psy7114           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK--NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQ   68 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk--~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   68 (134)
                      ++||+||||+++||..+||+|||+||+++|||+  ...+.++|+.|++||++|+||.+|+.||.+|..+.
T Consensus       573 ~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl  642 (1136)
T PTZ00341        573 TLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYDGI  642 (1136)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhcccccc
Confidence            489999999999999999999999999999999  34578899999999999999999999999988753

>KOG0719|consensus

Probab=99.75  E-value=1.7e-18  Score=128.04  Aligned_cols=67  Identities=33%  Similarity=0.597  Sum_probs=62.9

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCC-----CHHHHHHHHHHHHHHHhccChHHHHHHHHHhhhh
Q psy7114           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK-----NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQ   67 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk-----~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   67 (134)
                      +|+|+||||.++|+..+||+||+++++++|||+     ...+..+|+.|+.||+||+|.++|+.||..|.-.
T Consensus        14 ~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~id   85 (264)
T KOG0719|consen   14 KDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSID   85 (264)
T ss_pred             cCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCC
Confidence            589999999999999999999999999999999     4578899999999999999999999999988754

>KOG0721|consensus

Probab=99.73  E-value=5.1e-18  Score=124.34  Aligned_cols=70  Identities=33%  Similarity=0.547  Sum_probs=65.0

Q ss_pred             CccccccCCCCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHHHHhccChHHHHHHHHHhhhhhhcc
Q psy7114           2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDKN---SEHQEMFLKINEAWNILKDEKERKLYESQLLSQQQTH   71 (134)
Q Consensus         2 ~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk~---~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~   71 (134)
                      |||+||||+|+||..|||+|||+|++++||||.   .+.++.|..|.+||+.|+|+..|.+|..++.....++
T Consensus       100 DPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PDGpq~  172 (230)
T KOG0721|consen  100 DPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNPDGPQA  172 (230)
T ss_pred             CcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCCCCccc
Confidence            899999999999999999999999999999993   6788899999999999999999999999999876543

>smart00271 DnaJ DnaJ molecular chaperone homology domain

Probab=99.72  E-value=7.6e-18  Score=101.10  Aligned_cols=55  Identities=47%  Similarity=0.821  Sum_probs=51.3

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCH----HHHHHHHHHHHHHHhccChH
Q psy7114           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKNS----EHQEMFLKINEAWNILKDEK   55 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk~~----~~~~~f~~i~~Ay~~L~d~~   55 (134)
                      +|||+||||+++++.++||++|+++++.+|||+..    .+.+.|..|++||++|+||.
T Consensus         1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~   59 (60)
T smart00271        1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE   59 (60)
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence            58999999999999999999999999999999933    58899999999999999984

>cd06257 DnaJ DnaJ domain or J-domain

Probab=99.71  E-value=2.2e-17  Score=97.33  Aligned_cols=52  Identities=48%  Similarity=0.818  Sum_probs=49.2

Q ss_pred             CccccccCCCCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHHHHhccC
Q psy7114           2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDKN---SEHQEMFLKINEAWNILKD   53 (134)
Q Consensus         2 ~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk~---~~~~~~f~~i~~Ay~~L~d   53 (134)
                      |||+||||+++++.++||++|+++++++|||+.   ..+.+.|..|++||++|+|
T Consensus         1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d   55 (55)
T cd06257           1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD   55 (55)
T ss_pred             ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence            799999999999999999999999999999993   5689999999999999986

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.

>PHA03102 Small T antigen; Reviewed

Probab=99.69  E-value=1e-17  Score=118.16  Aligned_cols=68  Identities=15%  Similarity=0.273  Sum_probs=61.2

Q ss_pred             CccccccCCCCC--CHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccChHHHHHHHHHhhhhhhc
Q psy7114           2 NHFEILNCNVNS--TLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQQT   70 (134)
Q Consensus         2 ~~Y~vLgv~~~a--s~~~Ik~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~   70 (134)
                      ..|+||||+++|  |.++||+|||++++++||||.+ +.++|++|++||++|+|+.+|..||.++......
T Consensus         6 ~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg-~~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~~~   75 (153)
T PHA03102          6 ELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGG-DEEKMKELNTLYKKFRESVKSLRDLDGEEDSSSE   75 (153)
T ss_pred             HHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCc-hhHHHHHHHHHHHHHhhHHHhccccccCCccccc
Confidence            368999999999  9999999999999999999953 4679999999999999999999999998765543

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=99.69  E-value=2.8e-17  Score=138.22  Aligned_cols=68  Identities=29%  Similarity=0.528  Sum_probs=63.0

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHHHhccChHHHHHHHHHhhhhh
Q psy7114           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK--NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQ   68 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk--~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   68 (134)
                      +|||+||||+++|+.++||++||+|++++|||+  .+.+.++|+.|++||++|+||.+|..||.++....
T Consensus         2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG~   71 (871)
T TIGR03835         2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKYGHDGV   71 (871)
T ss_pred             CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhhccccc
Confidence            589999999999999999999999999999999  45677899999999999999999999999887543

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>KOG2923|consensus

Probab=99.68  E-value=2.6e-17  Score=98.17  Aligned_cols=56  Identities=34%  Similarity=0.764  Sum_probs=52.9

Q ss_pred             cccccCcccccccCCceeEEeeCCCCCeEEEecccccCCCCCCceeEeCCCCcceEEEec
Q psy7114          74 IYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEITA  133 (134)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~crcg~~~~v~~~~l~~g~~~~~~~v~C~~Csl~i~v~~  133 (134)
                      .++.+.+++|.|+.+.+.|.+||+||+.|.|+.++|..|    ..++.|++|||.|.|++
T Consensus         3 ~ydeVeiedfe~~~e~~~y~yPCpCGDrf~It~edL~~g----e~Va~CpsCSL~I~ViY   58 (67)
T KOG2923|consen    3 FYDEVEIEDFEFDEENQTYYYPCPCGDRFQITLEDLENG----EDVARCPSCSLIIRVIY   58 (67)
T ss_pred             ccceEEeecceeccCCCeEEcCCCCCCeeeecHHHHhCC----CeeecCCCceEEEEEEe
Confidence            467889999999999999999999999999999999999    99999999999999975

>KOG0720|consensus

Probab=99.68  E-value=8.1e-18  Score=134.34  Aligned_cols=69  Identities=25%  Similarity=0.488  Sum_probs=65.4

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHHHhccChHHHHHHHHHhhhhhh
Q psy7114           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK--NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQQ   69 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk--~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~   69 (134)
                      +|+|.+|||+++++.++||+.||++|...||||  .+.|.+.|+.|+.||++|+|+.+|+.||..+..+..
T Consensus       235 ~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~~kene  305 (490)
T KOG0720|consen  235 LDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLELKKENE  305 (490)
T ss_pred             CCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH
Confidence            589999999999999999999999999999999  889999999999999999999999999988886654

>PF05207 zf-CSL: CSL zinc finger; InterPro: IPR007872 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.67  E-value=3.6e-17  Score=96.97  Aligned_cols=53  Identities=45%  Similarity=0.981  Sum_probs=47.0

Q ss_pred             ccCcccccccCCceeEEeeCCCCCeEEEecccccCCCCCCceeEeCCCCcceEEEec
Q psy7114          77 SVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEITA  133 (134)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~crcg~~~~v~~~~l~~g~~~~~~~v~C~~Csl~i~v~~  133 (134)
                      .+++++|.+++....|.++||||+.|.|+.+++..+    ..+|+|++|||||+|..
T Consensus         2 ev~l~d~~~~~~~~~~~y~CRCG~~f~i~e~~l~~~----~~iv~C~sCSL~I~V~~   54 (55)
T PF05207_consen    2 EVSLDDMEFDEEEGVYSYPCRCGGEFEISEEDLEEG----EVIVQCDSCSLWIRVNY   54 (55)
T ss_dssp             EEETTTSEEETTTTEEEEEETTSSEEEEEHHHHHCT------EEEETTTTEEEEEE-
T ss_pred             eEEhhhceecCCCCEEEEcCCCCCEEEEcchhccCc----CEEEECCCCccEEEEEe
Confidence            467899999988889999999999999999999998    89999999999999975

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a probable zinc binding motif that contains four cysteines and may chelate zinc, known as the DPH-type after the diphthamide (DPH) biosynthesis protein in which it was first characterised, including the proteins DPH3 and DPH4. This domain is also found associated with N-terminal domain of heat shock protein DnaJ IPR001623 from INTERPRO domain. Diphthamide is a unique post-translationally modified histidine residue found only in translation elongation factor 2 (eEF-2). It is conserved from archaea to humans and serves as the target for diphteria toxin and Pseudomonas exotoxin A. These two toxins catalyse the transfer of ADP-ribose to diphtamide on eEF-2, thus inactivating eEF-2, halting cellular protein synthesis, and causing cell death []. The biosynthesis of diphtamide is dependent on at least five proteins, DPH1 to -5, and a still unidentified amidating enzyme. DPH3 and DPH4 share a conserved region, which encode a putative zinc finger, the DPH-type or CSL-type (after the conserved motif of the final cysteine) zinc finger [, ]. The function of this motif is unknown. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2L6L_A 1WGE_A 2JR7_A 1YOP_A 1YWS_A.

>PRK05014 hscB co-chaperone HscB; Provisional

Probab=99.67  E-value=5.5e-17  Score=116.82  Aligned_cols=67  Identities=24%  Similarity=0.358  Sum_probs=58.8

Q ss_pred             CCccccccCCCC--CCHHHHHHHHHHHHHHhCCCC----CH----HHHHHHHHHHHHHHhccChHHHHHHHHHhhhh
Q psy7114           1 MNHFEILNCNVN--STLEEIKENYKSLILKYHPDK----NS----EHQEMFLKINEAWNILKDEKERKLYESQLLSQ   67 (134)
Q Consensus         1 ~~~Y~vLgv~~~--as~~~Ik~ayr~l~~~~HPDk----~~----~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   67 (134)
                      +|||+||||++.  ++..+|+++|+++++++|||+    .+    .+.+.|..|++||++|+||.+|..|+..+.+.
T Consensus         1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l~g~   77 (171)
T PRK05014          1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSLHGF   77 (171)
T ss_pred             CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHhcCC
Confidence            699999999996  678999999999999999999    11    24668999999999999999999999776643

>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=99.67  E-value=1.4e-16  Score=115.97  Aligned_cols=64  Identities=44%  Similarity=0.735  Sum_probs=59.6

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCC---CH-HHHHHHHHHHHHHHhccChHHHHHHHHHh
Q psy7114           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK---NS-EHQEMFLKINEAWNILKDEKERKLYESQL   64 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk---~~-~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~   64 (134)
                      ++||+||||+++|+..+||++||++++++|||+   .+ .+.+.|+.|++||++|+|+..|..||..+
T Consensus         6 ~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~   73 (237)
T COG2214           6 LDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG   73 (237)
T ss_pred             hhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence            589999999999999999999999999999999   33 27899999999999999999999999874

>PRK01356 hscB co-chaperone HscB; Provisional

Probab=99.63  E-value=7.1e-16  Score=110.56  Aligned_cols=67  Identities=28%  Similarity=0.443  Sum_probs=57.8

Q ss_pred             CCccccccCCCC--CCHHHHHHHHHHHHHHhCCCCCH------HHHHHHHHHHHHHHhccChHHHHHHHHHhhhh
Q psy7114           1 MNHFEILNCNVN--STLEEIKENYKSLILKYHPDKNS------EHQEMFLKINEAWNILKDEKERKLYESQLLSQ   67 (134)
Q Consensus         1 ~~~Y~vLgv~~~--as~~~Ik~ayr~l~~~~HPDk~~------~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   67 (134)
                      +|||++|||++.  ++..+|+++|+++++++|||+..      .+...+..|++||++|+||.+|..|+..+...
T Consensus         2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l~g~   76 (166)
T PRK01356          2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLLQNI   76 (166)
T ss_pred             CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHccCC
Confidence            489999999996  78999999999999999999921      22345789999999999999999998887643

>PRK00294 hscB co-chaperone HscB; Provisional

Probab=99.63  E-value=4.3e-16  Score=112.28  Aligned_cols=68  Identities=25%  Similarity=0.403  Sum_probs=59.5

Q ss_pred             CCccccccCCCC--CCHHHHHHHHHHHHHHhCCCC---C-----HHHHHHHHHHHHHHHhccChHHHHHHHHHhhhhh
Q psy7114           1 MNHFEILNCNVN--STLEEIKENYKSLILKYHPDK---N-----SEHQEMFLKINEAWNILKDEKERKLYESQLLSQQ   68 (134)
Q Consensus         1 ~~~Y~vLgv~~~--as~~~Ik~ayr~l~~~~HPDk---~-----~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   68 (134)
                      +|||++|||++.  .+..+|+++|+++++++|||+   .     ..+.+.+..||+||++|+||.+|..|+..+.+..
T Consensus         4 ~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~g~~   81 (173)
T PRK00294          4 PCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALSGHE   81 (173)
T ss_pred             CChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhcCCC
Confidence            589999999997  567999999999999999999   1     1256789999999999999999999998877543

>PRK03578 hscB co-chaperone HscB; Provisional

Probab=99.61  E-value=5.7e-16  Score=111.96  Aligned_cols=68  Identities=21%  Similarity=0.382  Sum_probs=57.9

Q ss_pred             CCccccccCCCC--CCHHHHHHHHHHHHHHhCCCC---CHH-----HHHHHHHHHHHHHhccChHHHHHHHHHhhhhh
Q psy7114           1 MNHFEILNCNVN--STLEEIKENYKSLILKYHPDK---NSE-----HQEMFLKINEAWNILKDEKERKLYESQLLSQQ   68 (134)
Q Consensus         1 ~~~Y~vLgv~~~--as~~~Ik~ayr~l~~~~HPDk---~~~-----~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   68 (134)
                      +|||+||||++.  ++..+|+++|+++++++|||+   .+.     +.+.+..||+||++|+||.+|..|...+.+..
T Consensus         6 ~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l~G~~   83 (176)
T PRK03578          6 DDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLRGVD   83 (176)
T ss_pred             CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhcCCC
Confidence            589999999995  678999999999999999999   222     34446899999999999999999998766443

>KOG0624|consensus

Probab=99.55  E-value=4.8e-15  Score=116.08  Aligned_cols=66  Identities=26%  Similarity=0.519  Sum_probs=61.3

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCC------CHHHHHHHHHHHHHHHhccChHHHHHHHHHhhh
Q psy7114           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK------NSEHQEMFLKINEAWNILKDEKERKLYESQLLS   66 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk------~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   66 (134)
                      ||||.||||.++|+..||.+|||+++.++|||-      ...++++|.-|..|-+||+||++|+.+|..-+.
T Consensus       394 RDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnGeDP  465 (504)
T KOG0624|consen  394 RDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNGEDP  465 (504)
T ss_pred             chHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCCCCC
Confidence            699999999999999999999999999999998      456889999999999999999999999976553

>COG5216 Uncharacterized conserved protein [Function unknown]

Probab=99.53  E-value=1.6e-14  Score=85.10  Aligned_cols=56  Identities=30%  Similarity=0.760  Sum_probs=52.3

Q ss_pred             cccccCcccccccCCceeEEeeCCCCCeEEEecccccCCCCCCceeEeCCCCcceEEEec
Q psy7114          74 IYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEITA  133 (134)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~crcg~~~~v~~~~l~~g~~~~~~~v~C~~Csl~i~v~~  133 (134)
                      .++.+.+.+|.|..+...|.+||.||+.|.|+++|+..|    ..+..|++|||.|.|..
T Consensus         3 fYDEieiedftf~~e~~~ftyPCPCGDRFeIsLeDl~~G----E~VArCPSCSLiv~vvy   58 (67)
T COG5216           3 FYDEIEIEDFTFSREEKTFTYPCPCGDRFEISLEDLRNG----EVVARCPSCSLIVCVVY   58 (67)
T ss_pred             ccceeEeeeeEEcCCCceEEecCCCCCEeEEEHHHhhCC----ceEEEcCCceEEEEEEe
Confidence            467788999999999999999999999999999999999    99999999999999864

>KOG0550|consensus

Probab=99.52  E-value=1.3e-14  Score=115.34  Aligned_cols=71  Identities=31%  Similarity=0.487  Sum_probs=64.6

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCC----CHHHHHHHHHHHHHHHhccChHHHHHHHHHhhhhhhcc
Q psy7114           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK----NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQQTH   71 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk----~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~   71 (134)
                      ++||.|||+..+|+..+||++||++++.+|||+    ..+++.+|++|.+||.+|+||.+|..||....-....+
T Consensus       373 kd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg~dle~~~~  447 (486)
T KOG0550|consen  373 KDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQDLEEVGS  447 (486)
T ss_pred             hhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccccchhhhcC
Confidence            589999999999999999999999999999999    36789999999999999999999999998777655444

>KOG0722|consensus

Probab=99.49  E-value=1.6e-14  Score=108.45  Aligned_cols=68  Identities=31%  Similarity=0.588  Sum_probs=62.3

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHHHhccChHHHHHHHHHhhhhh
Q psy7114           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK--NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQ   68 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk--~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   68 (134)
                      .|.|+||||+++|+..+|.+|||+|++++|||+  ++.+.+.|+.|..||++|.|...|..||-.++...
T Consensus        33 enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt~ydyaldhpd  102 (329)
T KOG0722|consen   33 ENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRTQYDYALDHPD  102 (329)
T ss_pred             hhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHHhHHHHhcCch
Confidence            378999999999999999999999999999999  66667899999999999999999999998877543

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

Probab=99.46  E-value=5.2e-14  Score=112.77  Aligned_cols=70  Identities=33%  Similarity=0.593  Sum_probs=64.8

Q ss_pred             CccccccCCCCCCHHHHHHHHHHHHHHhCCCC--------CHHHHHHHHHHHHHHHhccChHHHHHHHHHhhhhhhcc
Q psy7114           2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDK--------NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQQTH   71 (134)
Q Consensus         2 ~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk--------~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~   71 (134)
                      |+|||||+..+++..+||++||+|+.++||||        ...-++.+++|++||..|+|...|+.|-.+|....++.
T Consensus        99 DPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd~pQh  176 (610)
T COG5407          99 DPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPDSPQH  176 (610)
T ss_pred             ChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCCCCcc
Confidence            79999999999999999999999999999999        34668899999999999999999999999998877654

>PTZ00100 DnaJ chaperone protein; Provisional

Probab=99.46  E-value=4.7e-14  Score=95.13  Aligned_cols=50  Identities=34%  Similarity=0.518  Sum_probs=45.9

Q ss_pred             CccccccCCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcc
Q psy7114           2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILK   52 (134)
Q Consensus         2 ~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~   52 (134)
                      ++|+||||+++||.++||++||++++++|||+. ++...|.+|++||++|.
T Consensus        66 eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkg-Gs~~~~~kIneAyevL~  115 (116)
T PTZ00100         66 EAYKILNISPTASKERIREAHKQLMLRNHPDNG-GSTYIASKVNEAKDLLL  115 (116)
T ss_pred             HHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHHHh
Confidence            579999999999999999999999999999984 45678999999999985

>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional

Probab=99.41  E-value=2.2e-13  Score=104.40  Aligned_cols=52  Identities=27%  Similarity=0.491  Sum_probs=48.1

Q ss_pred             CccccccCCCCCCHHHHHHHHHHHHHHhCCCCC----------HHHHHHHHHHHHHHHhccC
Q psy7114           2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDKN----------SEHQEMFLKINEAWNILKD   53 (134)
Q Consensus         2 ~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk~----------~~~~~~f~~i~~Ay~~L~d   53 (134)
                      ++|+||||++++|.++||++||+|++++|||+.          +.+.++|++|++||++|+.
T Consensus       201 ~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~  262 (267)
T PRK09430        201 DAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK  262 (267)
T ss_pred             hHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence            689999999999999999999999999999991          3578999999999999985

>KOG0714|consensus

Probab=99.39  E-value=2e-13  Score=103.60  Aligned_cols=65  Identities=37%  Similarity=0.633  Sum_probs=59.8

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCC--CH--HHHHHHHHHHHHHHhccChHHHHHHHHHhh
Q psy7114           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK--NS--EHQEMFLKINEAWNILKDEKERKLYESQLL   65 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk--~~--~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~   65 (134)
                      .++|.||||.+.|+.++|++||+++++++|||+  .+  .+..+|++|.+||++|+|+.+|..||.++.
T Consensus         3 ~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~   71 (306)
T KOG0714|consen    3 KDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGE   71 (306)
T ss_pred             ccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCc
Confidence            489999999999999999999999999999999  22  455689999999999999999999999998

>PHA02624 large T antigen; Provisional

Probab=99.39  E-value=2.5e-13  Score=113.11  Aligned_cols=58  Identities=19%  Similarity=0.377  Sum_probs=54.5

Q ss_pred             CccccccCCCCC--CHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccChHHHHHH
Q psy7114           2 NHFEILNCNVNS--TLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLY   60 (134)
Q Consensus         2 ~~Y~vLgv~~~a--s~~~Ik~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Y   60 (134)
                      ++|++|||+++|  +.++||+|||++++++|||+. ++.++|++|++||++|+|+.+|..|
T Consensus        12 elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKg-Gdeekfk~Ln~AYevL~d~~k~~r~   71 (647)
T PHA02624         12 ELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKG-GDEEKMKRLNSLYKKLQEGVKSARQ   71 (647)
T ss_pred             HHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC-CcHHHHHHHHHHHHHHhcHHHhhhc
Confidence            589999999999  999999999999999999984 4568999999999999999999998

>PRK01773 hscB co-chaperone HscB; Provisional

Probab=99.36  E-value=1.8e-12  Score=93.51  Aligned_cols=65  Identities=26%  Similarity=0.280  Sum_probs=57.8

Q ss_pred             CCccccccCCCC--CCHHHHHHHHHHHHHHhCCCC----C----HHHHHHHHHHHHHHHhccChHHHHHHHHHhh
Q psy7114           1 MNHFEILNCNVN--STLEEIKENYKSLILKYHPDK----N----SEHQEMFLKINEAWNILKDEKERKLYESQLL   65 (134)
Q Consensus         1 ~~~Y~vLgv~~~--as~~~Ik~ayr~l~~~~HPDk----~----~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~   65 (134)
                      +|||++|||++.  .+...++++|+++.+++|||+    .    ..+.+....||+||.+|+||.+|..|-..+.
T Consensus         2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~   76 (173)
T PRK01773          2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALN   76 (173)
T ss_pred             CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhc
Confidence            589999999996  789999999999999999999    1    2345567899999999999999999988776

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB

Probab=99.22  E-value=1.5e-11  Score=87.51  Aligned_cols=55  Identities=27%  Similarity=0.367  Sum_probs=48.1

Q ss_pred             CCHHHHHHHHHHHHHHhCCCC--------CHHHHHHHHHHHHHHHhccChHHHHHHHHHhhhh
Q psy7114          13 STLEEIKENYKSLILKYHPDK--------NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQ   67 (134)
Q Consensus        13 as~~~Ik~ayr~l~~~~HPDk--------~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   67 (134)
                      .+..+|+++|+++++++|||+        ...+...+..||+||++|+||.+|..|+..+.+.
T Consensus         3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~g~   65 (157)
T TIGR00714         3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLHGI   65 (157)
T ss_pred             CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhcCC
Confidence            467899999999999999998        1225678999999999999999999999888743

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.

>KOG1150|consensus

Probab=99.12  E-value=1.4e-10  Score=84.63  Aligned_cols=60  Identities=35%  Similarity=0.553  Sum_probs=55.1

Q ss_pred             CccccccCCCCCCHHHHHHHHHHHHHHhCCCC----CHHHHHHHHHHHHHHHhccChHHHHHHH
Q psy7114           2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDK----NSEHQEMFLKINEAWNILKDEKERKLYE   61 (134)
Q Consensus         2 ~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk----~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd   61 (134)
                      |+|+||.|.|..+.++||+.||+|++..||||    .+.+...|-.|.+||..|-|+..|..-+
T Consensus        54 NpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~~  117 (250)
T KOG1150|consen   54 NPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRCL  117 (250)
T ss_pred             ChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence            79999999999999999999999999999999    4678899999999999999998766544

>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

Probab=99.03  E-value=1.5e-10  Score=87.99  Aligned_cols=69  Identities=29%  Similarity=0.435  Sum_probs=60.3

Q ss_pred             CccccccCCC---CCCHHHHHHHHHHHHHHhCCCC-----CHHHHHHHHHHHHHHHhccChHHHHHHHHHhhhhhhc
Q psy7114           2 NHFEILNCNV---NSTLEEIKENYKSLILKYHPDK-----NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQQT   70 (134)
Q Consensus         2 ~~Y~vLgv~~---~as~~~Ik~ayr~l~~~~HPDk-----~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~   70 (134)
                      |+|.+|||+.   .|++.+|.++.++.+.+||||+     +.+....|+.|+.||++|+|+.+|..||.-......+
T Consensus        44 DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~df~advp  120 (379)
T COG5269          44 DLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSNDFDADVP  120 (379)
T ss_pred             hHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccccccccCCC
Confidence            6899999988   5788999999999999999999     3566788999999999999999999999776554443

>KOG0568|consensus

Probab=98.63  E-value=2.4e-08  Score=74.70  Aligned_cols=53  Identities=28%  Similarity=0.622  Sum_probs=47.8

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHHH-hccC
Q psy7114           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK--NSEHQEMFLKINEAWN-ILKD   53 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk--~~~~~~~f~~i~~Ay~-~L~d   53 (134)
                      |.+|.+|||..+|+.++++.+|..|++++|||.  .+.+.++|..|.+||. +|+.
T Consensus        47 ~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~  102 (342)
T KOG0568|consen   47 MECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQE  102 (342)
T ss_pred             HHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHH
Confidence            458999999999999999999999999999999  5567889999999998 6664

>KOG1789|consensus

Probab=98.53  E-value=1.1e-07  Score=83.33  Aligned_cols=51  Identities=39%  Similarity=0.694  Sum_probs=44.7

Q ss_pred             ccccccCCCC----CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccC
Q psy7114           3 HFEILNCNVN----STLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKD   53 (134)
Q Consensus         3 ~Y~vLgv~~~----as~~~Ik~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d   53 (134)
                      -|+||.|+-+    ...+.||++|++|+.+|||||+++..++|..|++||+.|..
T Consensus      1283 A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPEGRemFe~VnKAYE~L~~ 1337 (2235)
T KOG1789|consen 1283 AREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPEGREMFERVNKAYELLSS 1337 (2235)
T ss_pred             HHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHH
Confidence            3788887663    34588999999999999999999999999999999999983

>KOG0723|consensus

Probab=98.50  E-value=2.6e-07  Score=61.10  Aligned_cols=47  Identities=32%  Similarity=0.443  Sum_probs=40.5

Q ss_pred             ccccCCCCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHHHhccCh
Q psy7114           5 EILNCNVNSTLEEIKENYKSLILKYHPDK--NSEHQEMFLKINEAWNILKDE   54 (134)
Q Consensus         5 ~vLgv~~~as~~~Ik~ayr~l~~~~HPDk--~~~~~~~f~~i~~Ay~~L~d~   54 (134)
                      .||||++.++.+.||+++|++.+.+|||+  .+...   .+||||+++|...
T Consensus        60 lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSPYlA---sKINEAKdlLe~~  108 (112)
T KOG0723|consen   60 LILGVTPSLDKDKIKEAHRRIMLANHPDRGGSPYLA---SKINEAKDLLEGT  108 (112)
T ss_pred             HHhCCCccccHHHHHHHHHHHHHcCCCcCCCCHHHH---HHHHHHHHHHhcc
Confidence            48999999999999999999999999998  44433   3899999998753

>KOG3192|consensus

Probab=97.98  E-value=1.3e-05  Score=56.62  Aligned_cols=70  Identities=30%  Similarity=0.499  Sum_probs=56.3

Q ss_pred             CCccccccCCC--CCCHHHHHHHHHHHHHHhCCCC--------CHHHHHHHHHHHHHHHhccChHHHHHHHHHhhhhhhc
Q psy7114           1 MNHFEILNCNV--NSTLEEIKENYKSLILKYHPDK--------NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQQT   70 (134)
Q Consensus         1 ~~~Y~vLgv~~--~as~~~Ik~ayr~l~~~~HPDk--------~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~   70 (134)
                      ++||.++|...  -..++.++..|.-...++|||+        ...+.+...+|++||.+|.||-.|+.|-..+....+.
T Consensus         8 ~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilkl~g~e~~   87 (168)
T KOG3192|consen    8 SRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLKLKGQEQT   87 (168)
T ss_pred             HHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCc
Confidence            46899997655  4466777778999999999999        3356677889999999999999999998877765443

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.47  E-value=9.1e-05  Score=53.43  Aligned_cols=50  Identities=26%  Similarity=0.535  Sum_probs=43.4

Q ss_pred             CccccccCCCCCCHHHHHHHHHHHHHHhCCCC----------CHHHHHHHHHHHHHHHhc
Q psy7114           2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDK----------NSEHQEMFLKINEAWNIL   51 (134)
Q Consensus         2 ~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk----------~~~~~~~f~~i~~Ay~~L   51 (134)
                      +.|.+||+...+...+|+++|+++....|||+          -....++++.|++||+.+
T Consensus       114 ~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~  173 (174)
T COG1076         114 DALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI  173 (174)
T ss_pred             hHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence            56899999999999999999999999999999          345677788888888753

>KOG0431|consensus

Probab=97.30  E-value=0.00027  Score=58.15  Aligned_cols=44  Identities=30%  Similarity=0.502  Sum_probs=32.6

Q ss_pred             ccCCCCCCHHHHHHHHHHHHHHhCCCC----------CHHHHHHHHHHHHHHHh
Q psy7114           7 LNCNVNSTLEEIKENYKSLILKYHPDK----------NSEHQEMFLKINEAWNI   50 (134)
Q Consensus         7 Lgv~~~as~~~Ik~ayr~l~~~~HPDk----------~~~~~~~f~~i~~Ay~~   50 (134)
                      +++..-.+.++||++|||..|..||||          .-.+++.|-.+++||..
T Consensus       394 VsltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~  447 (453)
T KOG0431|consen  394 VSLTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNK  447 (453)
T ss_pred             CchhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHh
Confidence            345556789999999999999999999          12345556666666653

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=96.97  E-value=0.00062  Score=49.09  Aligned_cols=64  Identities=27%  Similarity=0.403  Sum_probs=51.3

Q ss_pred             CccccccCCCCCC--HHHHHHHHHHHHHHhCCCC----C----HHHHHHHHHHHHHHHhccChHHHHHHHHHhh
Q psy7114           2 NHFEILNCNVNST--LEEIKENYKSLILKYHPDK----N----SEHQEMFLKINEAWNILKDEKERKLYESQLL   65 (134)
Q Consensus         2 ~~Y~vLgv~~~as--~~~Ik~ayr~l~~~~HPDk----~----~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~   65 (134)
                      +++..+|..+.+.  .+.++..|+.+.+.+|||+    .    ..+...+..++.||.+|.+|-+|..|-....
T Consensus         2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~   75 (174)
T COG1076           2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALA   75 (174)
T ss_pred             CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhc
Confidence            5666677766553  4568999999999999999    1    1245678999999999999999999977666

>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []

Probab=96.24  E-value=0.0091  Score=41.07  Aligned_cols=50  Identities=30%  Similarity=0.329  Sum_probs=36.8

Q ss_pred             ccccCCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccChH
Q psy7114           5 EILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEK   55 (134)
Q Consensus         5 ~vLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~   55 (134)
                      .||||++..+.++|.+.|.+|...++|++ .++.-.-.+|..|.+.|..+.
T Consensus        62 ~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~k-GGSfYLQSKV~rAKErl~~El  111 (127)
T PF03656_consen   62 QILNVKEELSREEIQKRYKHLFKANDPSK-GGSFYLQSKVFRAKERLEQEL  111 (127)
T ss_dssp             HHHT--G--SHHHHHHHHHHHHHHT-CCC-TS-HHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCCCccCHHHHHHHHHHHHhccCCCc-CCCHHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999996 344555668889998887554

In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.

>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]

Probab=96.05  E-value=0.013  Score=33.62  Aligned_cols=35  Identities=34%  Similarity=0.759  Sum_probs=26.6

Q ss_pred             eEEeeC-CCCCeEEEecccccCCCCCCceeEeCCCCcceEEEecC
Q psy7114          91 MFTYPC-RCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEITAR  134 (134)
Q Consensus        91 ~~~~~c-rcg~~~~v~~~~l~~g~~~~~~~v~C~~Csl~i~v~~~  134 (134)
                      ...|.| +||..+  ++.....+       +.|+.|+..|.+..+
T Consensus         4 ~~~Y~C~~Cg~~~--~~~~~~~~-------irCp~Cg~rIl~K~R   39 (49)
T COG1996           4 MMEYKCARCGREV--ELDQETRG-------IRCPYCGSRILVKER   39 (49)
T ss_pred             eEEEEhhhcCCee--ehhhccCc-------eeCCCCCcEEEEecc
Confidence            356899 999988  33344555       899999999998653

>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain

Probab=95.43  E-value=0.029  Score=30.05  Aligned_cols=34  Identities=15%  Similarity=0.473  Sum_probs=28.0

Q ss_pred             eeC-CCCCeEEEecccccCCCCCCceeEeCCCCcceEEE
Q psy7114          94 YPC-RCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEI  131 (134)
Q Consensus        94 ~~c-rcg~~~~v~~~~l~~g~~~~~~~v~C~~Csl~i~v  131 (134)
                      ..| +||..|.|..+.+...    ...+.|+.|...+.+
T Consensus         3 ~~CP~C~~~~~v~~~~~~~~----~~~v~C~~C~~~~~~   37 (38)
T TIGR02098         3 IQCPNCKTSFRVVDSQLGAN----GGKVRCGKCGHVWYA   37 (38)
T ss_pred             EECCCCCCEEEeCHHHcCCC----CCEEECCCCCCEEEe
Confidence            457 9999999999988754    346899999998876

This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.

>PF13719 zinc_ribbon_5: zinc-ribbon domain

Probab=93.97  E-value=0.068  Score=28.71  Aligned_cols=34  Identities=15%  Similarity=0.585  Sum_probs=28.0

Q ss_pred             eeC-CCCCeEEEecccccCCCCCCceeEeCCCCcceEEE
Q psy7114          94 YPC-RCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEI  131 (134)
Q Consensus        94 ~~c-rcg~~~~v~~~~l~~g~~~~~~~v~C~~Csl~i~v  131 (134)
                      ..| .|+..|.|..+.+..+    ...|.|+.|.....|
T Consensus         3 i~CP~C~~~f~v~~~~l~~~----~~~vrC~~C~~~f~v   37 (37)
T PF13719_consen    3 ITCPNCQTRFRVPDDKLPAG----GRKVRCPKCGHVFRV   37 (37)
T ss_pred             EECCCCCceEEcCHHHcccC----CcEEECCCCCcEeeC
Confidence            457 8999999999988776    567999999987653

>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised

Probab=93.10  E-value=0.29  Score=35.99  Aligned_cols=42  Identities=21%  Similarity=0.345  Sum_probs=32.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccChHH
Q psy7114          10 NVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKE   56 (134)
Q Consensus        10 ~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~   56 (134)
                      +++||.+||.+|+.++..++--|     .+.-..|..||+.+.=...
T Consensus         1 S~~ASfeEIq~Arn~ll~~y~gd-----~~~~~~IEaAYD~ILM~rL   42 (194)
T PF11833_consen    1 SEDASFEEIQAARNRLLAQYAGD-----EKSREAIEAAYDAILMERL   42 (194)
T ss_pred             CCCCCHHHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999666     3344578899977654433

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.

>PF13446 RPT: A repeated domain in UCH-protein

Probab=92.34  E-value=0.31  Score=28.90  Aligned_cols=29  Identities=21%  Similarity=0.327  Sum_probs=24.2

Q ss_pred             ccccccCCCCCCHHHHHHHHHHHHHHhCCC
Q psy7114           3 HFEILNCNVNSTLEEIKENYKSLILKYHPD   32 (134)
Q Consensus         3 ~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPD   32 (134)
                      -|++|||+++.+.+.|-.+|+.... ..|+
T Consensus         7 Ay~~Lgi~~~~~Dd~Ii~~f~~~~~-~~P~   35 (62)
T PF13446_consen    7 AYEILGIDEDTDDDFIISAFQSKVN-DDPS   35 (62)
T ss_pred             HHHHhCcCCCCCHHHHHHHHHHHHH-cChH
Confidence            3889999999999999999998776 3443

>PF13717 zinc_ribbon_4: zinc-ribbon domain

Probab=91.94  E-value=0.21  Score=26.66  Aligned_cols=32  Identities=19%  Similarity=0.637  Sum_probs=26.5

Q ss_pred             eeC-CCCCeEEEecccccCCCCCCceeEeCCCCcceE
Q psy7114          94 YPC-RCGAEFCIEEQDTEGDGSDDNILIACDTCSLLL  129 (134)
Q Consensus        94 ~~c-rcg~~~~v~~~~l~~g~~~~~~~v~C~~Csl~i  129 (134)
                      ..| +|+..|.|.++.+-..    ...+.|+.|+...
T Consensus         3 i~Cp~C~~~y~i~d~~ip~~----g~~v~C~~C~~~f   35 (36)
T PF13717_consen    3 ITCPNCQAKYEIDDEKIPPK----GRKVRCSKCGHVF   35 (36)
T ss_pred             EECCCCCCEEeCCHHHCCCC----CcEEECCCCCCEe
Confidence            457 8999999999988765    5679999998754

>PF05180 zf-DNL: DNL zinc finger; InterPro: IPR007853 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=91.71  E-value=0.16  Score=30.99  Aligned_cols=35  Identities=23%  Similarity=0.583  Sum_probs=25.9

Q ss_pred             EeeC-CCC--CeEEEecccccCCCCCCceeEeCCCCcceEEE
Q psy7114          93 TYPC-RCG--AEFCIEEQDTEGDGSDDNILIACDTCSLLLEI  131 (134)
Q Consensus        93 ~~~c-rcg--~~~~v~~~~l~~g~~~~~~~v~C~~Csl~i~v  131 (134)
                      .+.| .|+  ..-.++......|    .++|.|++|.-+..|
T Consensus         4 ~FTC~~C~~Rs~~~~sk~aY~~G----vViv~C~gC~~~HlI   41 (66)
T PF05180_consen    4 TFTCNKCGTRSAKMFSKQAYHKG----VVIVQCPGCKNRHLI   41 (66)
T ss_dssp             EEEETTTTEEEEEEEEHHHHHTS----EEEEE-TTS--EEES
T ss_pred             EEEcCCCCCccceeeCHHHHhCC----eEEEECCCCcceeee
Confidence            4667 787  6778888888888    899999999987665

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The DNL-type zinc finger is found in Tim15, a zinc finger protein essential for protein import into mitochondria. Mitochondrial functions rely on the correct transport of resident proteins synthesized in the cytosol to mitochondria. Protein import into mitochondria is mediated by membrane protein complexes, protein translocators, in the outer and inner mitochondrial membranes, in cooperation with their assistant proteins in the cytosol, intermembrane space and matrix. Proteins destined to the mitochondrial matrix cross the outer membrane with the aid of the outer membrane translocator, the tOM40 complex, and then the inner membrane with the aid of the inner membrane translocator, the TIM23 complex, and mitochondrial motor and chaperone (MMC) proteins including mitochondrial heat- shock protein 70 (mtHsp70), and translocase in the inner mitochondrial membrane (Tim)15. Tim15 is also known as zinc finger motif (Zim)17 or mtHsp70 escort protein (Hep)1. Tim15 contains a zinc-finger motif (CXXC and CXXC) of ~100 residues, which has been named DNL after a short C-terminal motif of D(N/H)L [, , ]. The DNL-type zinc finger is an L-shaped molecule. The two CXXC motifs are located at the end of the L, and are sandwiched by two- stranded antiparallel beta-sheets. Two short alpha-helices constitute another leg of the L. The outer (convex) face of the L has a large acidic groove, which is lined with five acidic residues, whereas the inner (concave) face of the L has two positively charged residues, next to the CXXC motifs []. This entry represents the DNL-type zinc finger.; GO: 0008270 zinc ion binding; PDB: 2E2Z_A.

>smart00659 RPOLCX RNA polymerase subunit CX

Probab=90.43  E-value=0.72  Score=25.76  Aligned_cols=31  Identities=26%  Similarity=0.628  Sum_probs=23.2

Q ss_pred             EeeC-CCCCeEEEecccccCCCCCCceeEeCCCCcceEEEec
Q psy7114          93 TYPC-RCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEITA  133 (134)
Q Consensus        93 ~~~c-rcg~~~~v~~~~l~~g~~~~~~~v~C~~Csl~i~v~~  133 (134)
                      .|.| .||..+.+..   .       ..+.|+.|..-|...-
T Consensus         2 ~Y~C~~Cg~~~~~~~---~-------~~irC~~CG~rIlyK~   33 (44)
T smart00659        2 IYICGECGRENEIKS---K-------DVVRCRECGYRILYKK   33 (44)
T ss_pred             EEECCCCCCEeecCC---C-------CceECCCCCceEEEEe
Confidence            4788 9999888761   1       2389999999887653

present in RNA polymerase I, II and III

>KOG0724|consensus

Probab=90.40  E-value=0.39  Score=37.79  Aligned_cols=53  Identities=34%  Similarity=0.492  Sum_probs=41.8

Q ss_pred             CCCHHHHHHHHHHHHHHhCCCCCH-------HHHHHHHHHHHHHHhccChHHHHHHHHHh
Q psy7114          12 NSTLEEIKENYKSLILKYHPDKNS-------EHQEMFLKINEAWNILKDEKERKLYESQL   64 (134)
Q Consensus        12 ~as~~~Ik~ayr~l~~~~HPDk~~-------~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~   64 (134)
                      .++..+|+.+|+..++..||++..       ...+.|+.|.+||.+|.+...|...|...
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~   62 (335)
T KOG0724|consen    3 LASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSWD   62 (335)
T ss_pred             cccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhhh
Confidence            467789999999999999999842       45677999999999999865544544443

>PF05280 FlhC: Flagellar transcriptional activator (FlhC); InterPro: IPR007944 This family consists of several bacterial flagellar transcriptional activator (FlhC) proteins

Probab=88.38  E-value=0.37  Score=34.93  Aligned_cols=30  Identities=30%  Similarity=0.737  Sum_probs=13.7

Q ss_pred             EeeC-CCCCeEEEecccccCCCCCCceeEeCCCCcceE
Q psy7114          93 TYPC-RCGAEFCIEEQDTEGDGSDDNILIACDTCSLLL  129 (134)
Q Consensus        93 ~~~c-rcg~~~~v~~~~l~~g~~~~~~~v~C~~Csl~i  129 (134)
                      -.+| +||+.|.+...++...       +.|+.|++.-
T Consensus       134 l~~C~~C~~~fv~~~~~~~~~-------~~Cp~C~~ps  164 (175)
T PF05280_consen  134 LAPCRRCGGHFVTHAHDPRHS-------FVCPFCQPPS  164 (175)
T ss_dssp             EEE-TTT--EEEEESS--SS-----------TT-----
T ss_pred             ccCCCCCCCCeECcCCCCCcC-------cCCCCCCCcc
Confidence            4688 7999999998887666       7999999743

FlhC combines with FlhD to form a regulatory complex in Escherichia coli, this complex has been shown to be a global regulator involved in many cellular processes as well as a flagellar transcriptional activator [].; GO: 0003677 DNA binding, 0030092 regulation of flagellum assembly, 0045893 positive regulation of transcription, DNA-dependent; PDB: 2AVU_E.

>PF14687 DUF4460: Domain of unknown function (DUF4460)

Probab=87.92  E-value=1.2  Score=29.84  Aligned_cols=23  Identities=17%  Similarity=0.404  Sum_probs=20.1

Q ss_pred             CCCCHHHHHHHHHHHHHHhCCCC
Q psy7114          11 VNSTLEEIKENYKSLILKYHPDK   33 (134)
Q Consensus        11 ~~as~~~Ik~ayr~l~~~~HPDk   33 (134)
                      ...+..+++.+.|..-++.|||.
T Consensus         4 r~~~~~~l~~aLr~Fy~~VHPDl   26 (112)
T PF14687_consen    4 RNLSSPDLRSALRPFYFAVHPDL   26 (112)
T ss_pred             hhhhhHHHHHHHHHHHHHhCCcc
Confidence            34567889999999999999997

>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional

Probab=87.66  E-value=1.6  Score=24.24  Aligned_cols=30  Identities=33%  Similarity=0.819  Sum_probs=22.3

Q ss_pred             EeeC-CCCCeEEEecccccCCCCCCceeEeCCCCcceEEE
Q psy7114          93 TYPC-RCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEI  131 (134)
Q Consensus        93 ~~~c-rcg~~~~v~~~~l~~g~~~~~~~v~C~~Csl~i~v  131 (134)
                      .+.| +||..+.+.....  .       +.|+.|...+..
T Consensus         3 ~y~C~~CG~~~~~~~~~~--~-------~~Cp~CG~~~~~   33 (46)
T PRK00398          3 EYKCARCGREVELDEYGT--G-------VRCPYCGYRILF   33 (46)
T ss_pred             EEECCCCCCEEEECCCCC--c-------eECCCCCCeEEE
Confidence            4778 8999988875543  2       799999876654

>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria

Probab=87.17  E-value=0.79  Score=25.16  Aligned_cols=32  Identities=28%  Similarity=0.776  Sum_probs=22.7

Q ss_pred             eeEEeeC-CCCCeEEEecccccCCCCCCceeEeCCCCcc
Q psy7114          90 QMFTYPC-RCGAEFCIEEQDTEGDGSDDNILIACDTCSL  127 (134)
Q Consensus        90 ~~~~~~c-rcg~~~~v~~~~l~~g~~~~~~~v~C~~Csl  127 (134)
                      ..|.|.| .||..|.+...--.      ...+.|+.|.-
T Consensus         2 P~Yey~C~~Cg~~fe~~~~~~~------~~~~~CP~Cg~   34 (42)
T PF09723_consen    2 PIYEYRCEECGHEFEVLQSISE------DDPVPCPECGS   34 (42)
T ss_pred             CCEEEEeCCCCCEEEEEEEcCC------CCCCcCCCCCC
Confidence            3578999 89988887654222      23479999976

The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>TIGR01206 lysW lysine biosynthesis protein LysW

Probab=85.44  E-value=1.7  Score=25.39  Aligned_cols=32  Identities=38%  Similarity=0.883  Sum_probs=24.3

Q ss_pred             eeC-CCCCeEEEecccccCCCCCCceeEeCCCCcceEEEe
Q psy7114          94 YPC-RCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEIT  132 (134)
Q Consensus        94 ~~c-rcg~~~~v~~~~l~~g~~~~~~~v~C~~Csl~i~v~  132 (134)
                      ..| .||..+.+....+  |     .++.|+.|-.-+.|.
T Consensus         3 ~~CP~CG~~iev~~~~~--G-----eiV~Cp~CGaeleVv   35 (54)
T TIGR01206         3 FECPDCGAEIELENPEL--G-----ELVICDECGAELEVV   35 (54)
T ss_pred             cCCCCCCCEEecCCCcc--C-----CEEeCCCCCCEEEEE
Confidence            357 8999888865443  4     378999999988885

This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.

>smart00834 CxxC_CXXC_SSSS Putative regulatory protein

Probab=85.38  E-value=1.2  Score=23.71  Aligned_cols=32  Identities=25%  Similarity=0.712  Sum_probs=22.4

Q ss_pred             eEEeeC-CCCCeEEEecccccCCCCCCceeEeCCCCcce
Q psy7114          91 MFTYPC-RCGAEFCIEEQDTEGDGSDDNILIACDTCSLL  128 (134)
Q Consensus        91 ~~~~~c-rcg~~~~v~~~~l~~g~~~~~~~v~C~~Csl~  128 (134)
                      .|.+.| .||..|.+......      ...+.|+.|.--
T Consensus         3 ~Y~y~C~~Cg~~fe~~~~~~~------~~~~~CP~Cg~~   35 (41)
T smart00834        3 IYEYRCEDCGHTFEVLQKISD------DPLATCPECGGD   35 (41)
T ss_pred             CEEEEcCCCCCEEEEEEecCC------CCCCCCCCCCCc
Confidence            477899 89998887754321      133689999863

CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>PRK12860 transcriptional activator FlhC; Provisional

Probab=83.71  E-value=0.79  Score=33.63  Aligned_cols=28  Identities=29%  Similarity=0.774  Sum_probs=23.8

Q ss_pred             EeeC-CCCCeEEEecccccCCCCCCceeEeCCCCcc
Q psy7114          93 TYPC-RCGAEFCIEEQDTEGDGSDDNILIACDTCSL  127 (134)
Q Consensus        93 ~~~c-rcg~~~~v~~~~l~~g~~~~~~~v~C~~Csl  127 (134)
                      -.+| .||+.|.+...|+...       ..|+-|..
T Consensus       134 l~~C~~Cgg~fv~~~~e~~~~-------f~CplC~~  162 (189)
T PRK12860        134 LARCCRCGGKFVTHAHDLRHN-------FVCGLCQP  162 (189)
T ss_pred             eccCCCCCCCeeccccccCCC-------CcCCCCCC
Confidence            4678 6999999999988777       79999984

>KOG3277|consensus

Probab=83.47  E-value=2  Score=30.54  Aligned_cols=37  Identities=24%  Similarity=0.531  Sum_probs=29.7

Q ss_pred             eEEeeC-CCC--CeEEEecccccCCCCCCceeEeCCCCcceEEE
Q psy7114          91 MFTYPC-RCG--AEFCIEEQDTEGDGSDDNILIACDTCSLLLEI  131 (134)
Q Consensus        91 ~~~~~c-rcg--~~~~v~~~~l~~g~~~~~~~v~C~~Csl~i~v  131 (134)
                      ...|.| -|+  ..-.|+....+.|    .+||.|+.|+....|
T Consensus        77 ~l~yTCkvCntRs~ktisk~AY~~G----vVivqC~gC~~~Hli  116 (165)
T KOG3277|consen   77 QLAYTCKVCNTRSTKTISKQAYEKG----VVIVQCPGCKNHHLI  116 (165)
T ss_pred             EEEEEeeccCCccccccChhhhhCc----eEEEECCCCccceee
Confidence            357888 787  5788888888888    899999999876554

>PRK12722 transcriptional activator FlhC; Provisional

Probab=83.09  E-value=0.87  Score=33.35  Aligned_cols=28  Identities=29%  Similarity=0.765  Sum_probs=23.8

Q ss_pred             EeeC-CCCCeEEEecccccCCCCCCceeEeCCCCcc
Q psy7114          93 TYPC-RCGAEFCIEEQDTEGDGSDDNILIACDTCSL  127 (134)
Q Consensus        93 ~~~c-rcg~~~~v~~~~l~~g~~~~~~~v~C~~Csl  127 (134)
                      -.+| .||+.|.+...|+...       ..|+-|..
T Consensus       134 l~~C~~Cgg~fv~~~~e~~~~-------f~CplC~~  162 (187)
T PRK12722        134 LSSCNCCGGHFVTHAHDPVGS-------FVCGLCQP  162 (187)
T ss_pred             eccCCCCCCCeeccccccCCC-------CcCCCCCC
Confidence            4578 6999999999988777       79999986

>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family

Probab=81.77  E-value=1.8  Score=24.45  Aligned_cols=31  Identities=26%  Similarity=0.788  Sum_probs=21.3

Q ss_pred             eEEeeC-CCCCeEEEecccccCCCCCCceeEeCCCCcc
Q psy7114          91 MFTYPC-RCGAEFCIEEQDTEGDGSDDNILIACDTCSL  127 (134)
Q Consensus        91 ~~~~~c-rcg~~~~v~~~~l~~g~~~~~~~v~C~~Csl  127 (134)
                      .|.|.| .||..|.+....-.      ...+.|+.|..
T Consensus         3 ~Yey~C~~Cg~~fe~~~~~~~------~~~~~CP~Cg~   34 (52)
T TIGR02605         3 IYEYRCTACGHRFEVLQKMSD------DPLATCPECGG   34 (52)
T ss_pred             CEEEEeCCCCCEeEEEEecCC------CCCCCCCCCCC
Confidence            578999 79998988643111      12367999986

This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	134
2l6l_A	155	Solution Structure Of Human J-Protein Co-Chaperone,		1e-13
2lo1_A	71	Nmr Structure Of The Protein Bc008182, A Dnaj-Like		4e-11
2och_A	73	J-domain Of Dnj-12 From Caenorhabditis Elegans Leng		1e-09
2dmx_A	92	Solution Structure Of The J Domain Of Dnaj Homolog		2e-09
2ej7_A	82	Solution Structure Of The Dnaj Domain Of The Human		4e-09
2ctw_A	109	Solution Structure Of J-Domain From Mouse Dnaj Subf		9e-09
3apq_A	210	Crystal Structure Of J-Trx1 Fragment Of Erdj5 Lengt		1e-07
1xbl_A	107	Nmr Structure Of The J-Domain (Residues 2-76) In Th		1e-07
3apo_A	780	Crystal Structure Of Full-Length Erdj5 Length = 780		1e-07
1hdj_A	77	Human Hsp40 (Hdj-1), Nmr Length = 77		1e-07
1bq0_A	103	J-Domain (Residues 1-77) Of The Escherichia Coli N-		1e-07
2dn9_A	79	Solution Structure Of J-Domain From The Dnaj Homolo		2e-07
1bqz_A	77	J-Domain (Residues 1-77) Of The Escherichia Coli N-		2e-07
2ctp_A	78	Solution Structure Of J-Domain From Human Dnaj Subf		2e-07
2o37_A	92	J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From S		2e-07
3lz8_A	329	Structure Of A Putative Chaperone Dnaj From Klebsie		2e-07
1wjz_A	94	Soluiotn Structure Of J-Domain Of Mouse Dnaj Like P		3e-07
2lgw_A	99	Solution Structure Of The J Domain Of Hsj1a Length		5e-07
2kqx_A	73	Nmr Structure Of The J-Domain (Residues 2-72) In Th		3e-06
2yua_A	99	Solution Structure Of The Dnaj Domain From Human Wi		8e-06
1yws_A	82	Solution Structure Of Ybl071w-A From Saccharomyces		8e-06
2ctr_A	88	Solution Structure Of J-Domain From Human Dnaj Subf		1e-05
2cug_A	88	Solution Structure Of The J Domain Of The Pseudo Dn		2e-05
1yop_A	83	The Solution Structure Of Kti11p Length = 83		3e-05
2ctq_A	112	Solution Structure Of J-Domain From Human Dnaj Subf		8e-04
2jr7_A	89	Solution Structure Of Human Desr1 Length = 89		8e-04

>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4 Length = 155

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 76/140 (54%), Gaps = 15/140 (10%)
Query: 2   NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNS---------EHQEMFLKINEAWNILK 52
           + + IL  + ++ + ++K+ Y+ LIL YHPDK S         E  + F++I++AW IL 
Sbjct: 11  DWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILG 70
Query: 53  DEKERKLYESQLLSQQQTHMN-IYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEG 111
           +E+ ++ Y+ Q       ++  +   V L +M        F   CRCG ++ + +     
Sbjct: 71  NEETKREYDLQRCEDDLRNVGPVDAQVYLEEMSWNEGDHSFYLSCRCGGKYSVSK----- 125
Query: 112 DGSDDNILIACDTCSLLLEI 131
           D +++  LI+CDTCSL++E+
Sbjct: 126 DEAEEVSLISCDTCSLIIEL 145

>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain From Homo Sapiens Length = 71

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 42/59 (71%)
Query: 3  HFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYE 61
          ++++L    N+T EE+K+ Y+ L LKYHPDKN    E F +I++A+ +L D K+R+LY+
Sbjct: 8  YYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYD 66

>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans Length = 73

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 43/60 (71%)
Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYE 61
           ++++L    +++  E+K+ Y+ + LK+HPDKN +  E F +I++A+ +L DEK+R++Y+
Sbjct: 9  GYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQIYD 68

>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog Subfamily B Member 8 Length = 92

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 44/65 (67%), Gaps = 4/65 (6%)
Query: 1  MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQE----MFLKINEAWNILKDEKE 56
           N++E+L    +++ E+IK+ Y+ L L++HPDKN +++E     F  ++EA+ +L D K+
Sbjct: 9  ANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKK 68
Query: 57 RKLYE 61
          R LY+
Sbjct: 69 RSLYD 73

>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein Hcg3, A Hypothetical Protein Tmp_locus_21 Length = 82

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 44/65 (67%), Gaps = 4/65 (6%)
Query: 1  MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQE----MFLKINEAWNILKDEKE 56
          ++++E+L+    ++ E IK+ Y+ L LK+HPDKN E++E     F ++ EA+ +L D K+
Sbjct: 9  VDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKK 68
Query: 57 RKLYE 61
          R +Y+
Sbjct: 69 RDIYD 73

>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C Menber 5 Length = 109

Iteration: 1
 Score = 55.5 bits (132), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 15/94 (15%)
Query: 4   FEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEM---FLKINEAWNILKDEKERKLY 60
           + +L  + N+T ++IK++Y+ L LKYHPDKN ++ E    F +IN A  IL D  +R +Y
Sbjct: 20  YHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIY 79
Query: 61  ESQLLSQQQTHMNIYKSVSLSDMEHKGESQMFTY 94
           +             Y S+ L   E  GE  + TY
Sbjct: 80  DK------------YGSLGLYVAEQFGEENVNTY 101

>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5 Length = 210

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEM---FLKINEAWNILKDEKERK 58
          N + +L  +  ++  EI++ +K L LK HPDKN  +      FLKIN A+ +LKDE  RK
Sbjct: 3  NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 62
Query: 59 LYE 61
           Y+
Sbjct: 63 KYD 65

>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The Escherichia Coli N-Terminal Fragment (Residues 2-108) Of The Molecular Chaperone Dnaj, 20 Structures Length = 107

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 39/63 (61%), Gaps = 3/63 (4%)
Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEM---FLKINEAWNILKDEKERK 58
          +++EIL  +  +   EI++ YK L +KYHPD+N   +E    F +I EA+ +L D ++R 
Sbjct: 4  DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 59 LYE 61
           Y+
Sbjct: 64 AYD 66

>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5 Length = 780

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEM---FLKINEAWNILKDEKERK 58
          N + +L  +  ++  EI++ +K L LK HPDKN  +      FLKIN A+ +LKDE  RK
Sbjct: 22 NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 81
Query: 59 LYE 61
           Y+
Sbjct: 82 KYD 84

>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr Length = 77

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEH--QEMFLKINEAWNILKDEKERKL 59
          ++++ L     ++ EEIK  Y+   L+YHPDKN E   +E F +I EA+++L D ++R++
Sbjct: 4  DYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREI 63
Query: 60 YE 61
          ++
Sbjct: 64 FD 65

>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-104) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 103

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 39/63 (61%), Gaps = 3/63 (4%)
Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPDKN---SEHQEMFLKINEAWNILKDEKERK 58
          +++EIL  +  +   EI++ YK L +KYHPD+N    E +  F +I EA+ +L D ++R 
Sbjct: 4  DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 59 LYE 61
           Y+
Sbjct: 64 AYD 66

>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog, Human Tid1 Protein Length = 79

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 41/64 (64%), Gaps = 3/64 (4%)
Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSE---HQEMFLKINEAWNILKDEKERK 58
          ++++IL    N++ +EIK+ Y  L  KYHPD N +    +E F ++ EA+ +L DE +RK
Sbjct: 8  DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRK 67
Query: 59 LYES 62
           Y++
Sbjct: 68 QYDA 71

>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-78) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 77

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 39/63 (61%), Gaps = 3/63 (4%)
Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPDKN---SEHQEMFLKINEAWNILKDEKERK 58
          +++EIL  +  +   EI++ YK L +KYHPD+N    E +  F +I EA+ +L D ++R 
Sbjct: 4  DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 59 LYE 61
           Y+
Sbjct: 64 AYD 66

>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 12 Length = 78

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPDKN--SEHQEMFLKINEAWNILKDEKERKL 59
          +++EIL  +  ++ E++K+ Y+ L LK+HPDKN      E F  I  A+ +L + ++RK 
Sbjct: 8  DYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQ 67
Query: 60 YE 61
          Y+
Sbjct: 68 YD 69

>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From Saccharomyces Cerevisiae Length = 92

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 40/58 (68%)
Query: 4  FEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYE 61
          +++L  + ++  +E+K+ Y+   LKYHPDK +   E F +I+EA+ IL D ++R++Y+
Sbjct: 11 YDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREIYD 68

>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A Resolution. Length = 329

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 10/92 (10%)
Query: 2   NHFEILNCNVNSTLEEIKENYKSLILKYHPD--KNSEHQEMFLKINEAWNILKDEKERKL 59
           +++ IL       L+ IK  Y+ L  KYHPD  K ++ +  F  + EAW +LKDE+ R  
Sbjct: 29  DYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAE 88
Query: 60  Y--------ESQLLSQQQTHMNIYKSVSLSDM 83
           Y        +     Q+QTH   Y      D+
Sbjct: 89  YDQLWQHRNDPGFGRQRQTHEQSYSQQDFDDI 120

>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein Length = 94

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 9/71 (12%)
Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNS---------EHQEMFLKINEAWNILK 52
          + + IL  + ++ + ++K+ Y+ LIL YHPDK S         E  + F++I++AW IL 
Sbjct: 17 DWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILG 76
Query: 53 DEKERKLYESQ 63
          +E+ +K Y+ Q
Sbjct: 77 NEETKKKYDLQ 87

>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a Length = 99

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 45/65 (69%), Gaps = 4/65 (6%)
Query: 1  MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEM----FLKINEAWNILKDEKE 56
           +++EIL+   +++ ++IK+ Y+   L++HPDKN +++E     F ++ EA+ +L D+ +
Sbjct: 2  ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHK 61
Query: 57 RKLYE 61
          R++Y+
Sbjct: 62 REIYD 66

>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The Escherichia Coli Cbpa Length = 73

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPD--KNSEHQEMFLKINEAWNILKDEKERKL 59
          +++ I+       L+ IK  Y+ L  KYHPD  K  + +  F ++ EAW +L DE+ R  
Sbjct: 6  DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 65
Query: 60 YE 61
          Y+
Sbjct: 66 YD 67

>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams- Beuren Syndrome Chromosome Region 18 Protein Length = 99

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 4  FEILNCNVNSTLEEIKENYKSLILKYHPDKNS---EHQEMFLKINEAWNILKDEKERKLY 60
          +++L     +T  +IK  Y      YHPD+NS   E  E F +I++A+ +L     R+ Y
Sbjct: 20 YDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKY 79
Query: 61 ESQLLS 66
          +  LLS
Sbjct: 80 DRGLLS 85

>pdb|1YWS|A Chain A, Solution Structure Of Ybl071w-A From Saccharomyces Cerevisiae Length = 82

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 72  MNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDT-EGDGSDDNILIACDTCSLLLE 130
           M+ Y  + + DM  + E+QMFTYPC CG  F I   D  EG+      +  C +CSL+++
Sbjct: 1   MSTYDEIEIEDMTFEPENQMFTYPCPCGDRFQIYLDDMFEGEK-----VAVCPSCSLMID 55
Query: 131 IT 132
           + 
Sbjct: 56  VV 57

>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 9 Length = 88

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 3  HFEILNCNVNSTLEEIKENYKSLILKYHPDKN--SEHQEMFLKINEAWNILKDEKERKLY 60
          +++IL    +++  +IK+ +  L +KYHPDKN   + +  F +I EA+  L D   RK Y
Sbjct: 9  YYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEY 68
Query: 61 ES 62
          ++
Sbjct: 69 DT 70

>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj Protein, Mouse Hypothetical Mkiaa0962 Length = 88

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 1  MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEH--QEMFLKINEAWNILKDEKERK 58
           + + +L  +  ++  +IK+ YK L  ++HPDKN +   ++ F++I++A+ IL +E++R 
Sbjct: 17 FDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRT 76
Query: 59 LYE 61
           Y+
Sbjct: 77 NYD 79

>pdb|1YOP|A Chain A, The Solution Structure Of Kti11p Length = 83

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 72  MNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDT-EGDGSDDNILIACDTCSLLLE 130
           ++ Y  + + DM  + E+QMFTYPC CG  F I   D  EG+      +  C +CSL+++
Sbjct: 2   VSTYDEIEIEDMTFEPENQMFTYPCPCGDRFQIYLDDMFEGEK-----VAVCPSCSLMID 56
Query: 131 IT 132
           + 
Sbjct: 57  VV 58

>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily C Menber 12 Length = 112

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQ---EMFLKINEAWNILKDEKERK 58
          +++ +L C+  S++E+I   +K   L+ HPDK+ E+    E F K+ +A  IL +E+ R 
Sbjct: 21 DYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRA 80
Query: 59 LYESQLLSQ 67
           Y+    SQ
Sbjct: 81 RYDHWRRSQ 89

>pdb|2JR7|A Chain A, Solution Structure Of Human Desr1 Length = 89

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
Query: 78  VSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEI 131
           V + D ++  +S+ + YPC CG  F I ++D E +G D   +  C +CSL++++
Sbjct: 8   VEIEDFQYDEDSETYFYPCPCGDNFSITKEDLE-NGED---VATCPSCSLIIKV 57

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	134
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	1e-32
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	3e-15
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	3e-15
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	4e-15
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	7e-15
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	5e-14
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	8e-14
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	1e-13
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	1e-13
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	1e-13
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	1e-13
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	2e-13
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	2e-13
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	2e-13
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	2e-13
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	4e-13
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	4e-13
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	6e-13
1yop_A	83	KTI11P; zinc finger, metal binding protein; NMR {S	6e-13
1wge_A	83	Hypothetical protein 2610018L09RIK; diphthamide,CS	2e-12
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	3e-12
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	4e-12
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	5e-12
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	1e-11
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	2e-11
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	2e-11
2guz_A	71	Mitochondrial import inner membrane translocase su	5e-11
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	8e-11
2jr7_A	89	DPH3 homolog; DESR1, CSL zinc finger, metal bindin	1e-10
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	1e-10
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	3e-10
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	7e-10
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	3e-08
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-07
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	3e-07
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	2e-06
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	5e-06

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Length = 155

 Score =  111 bits (279), Expect = 1e-32
 Identities = 41/140 (29%), Positives = 75/140 (53%), Gaps = 15/140 (10%)

Query: 2   NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNS---------EHQEMFLKINEAWNILK 52
           + + IL  + ++ + ++K+ Y+ LIL YHPDK S         E  + F++I++AW IL 
Sbjct: 11  DWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILG 70

Query: 53  DEKERKLYESQLLSQQQTHM-NIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEG 111
           +E+ ++ Y+ Q       ++  +   V L +M        F   CRCG ++ + + + E 
Sbjct: 71  NEETKREYDLQRCEDDLRNVGPVDAQVYLEEMSWNEGDHSFYLSCRCGGKYSVSKDEAE- 129

Query: 112 DGSDDNILIACDTCSLLLEI 131
               +  LI+CDTCSL++E+
Sbjct: 130 ----EVSLISCDTCSLIIEL 145

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Length = 73

 Score = 64.6 bits (158), Expect = 3e-15
 Identities = 21/57 (36%), Positives = 41/57 (71%)

Query: 4  FEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLY 60
          +++L    +++  E+K+ Y+ + LK+HPDKN +  E F +I++A+ +L DEK+R++Y
Sbjct: 11 YDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQIY 67

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Length = 92

 Score = 65.0 bits (159), Expect = 3e-15
 Identities = 21/57 (36%), Positives = 39/57 (68%)

Query: 4  FEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLY 60
          +++L  + ++  +E+K+ Y+   LKYHPDK +   E F +I+EA+ IL D ++R++Y
Sbjct: 11 YDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREIY 67

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 112

 Score = 65.5 bits (160), Expect = 4e-15
 Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)

Query: 4  FEILNCNVNSTLEEIKENYKSLILKYHPDKN---SEHQEMFLKINEAWNILKDEKERKLY 60
          + +L C+  S++E+I   +K   L+ HPDK+    +  E F K+ +A  IL +E+ R  Y
Sbjct: 23 YTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARY 82

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 64.4 bits (157), Expect = 7e-15
 Identities = 11/62 (17%), Positives = 26/62 (41%), Gaps = 2/62 (3%)

Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEH--QEMFLKINEAWNILKDEKERKL 59
          + +++L     ++ +E+ + Y+ L +  HPDK      ++ F  +  A   L    +   
Sbjct: 28 DSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSGP 87

Query: 60 YE 61
            
Sbjct: 88 SS 89

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Length = 109

 Score = 62.4 bits (152), Expect = 5e-14
 Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 3/60 (5%)

Query: 4  FEILNCNVNSTLEEIKENYKSLILKYHPDKN---SEHQEMFLKINEAWNILKDEKERKLY 60
          + +L  + N+T ++IK++Y+ L LKYHPDKN    E  + F +IN A  IL D  +R +Y
Sbjct: 20 YHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIY 79

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Length = 88

 Score = 61.6 bits (150), Expect = 8e-14
 Identities = 19/59 (32%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 4  FEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQ--EMFLKINEAWNILKDEKERKLY 60
          + +L  +  ++  +IK+ YK L  ++HPDKN +    + F++I++A+ IL +E++R  Y
Sbjct: 20 YRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNY 78

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score = 64.1 bits (156), Expect = 1e-13
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 3/59 (5%)

Query: 5  EILNCNVNSTLEEIKENYKSLILKYHPDKNS---EHQEMFLKINEAWNILKDEKERKLY 60
           +L  +  ++  EI++ +K L LK HPDKN         FLKIN A+ +LKDE  RK Y
Sbjct: 6  SLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKY 64

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 82

 Score = 60.7 bits (148), Expect = 1e-13
 Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 4/61 (6%)

Query: 4  FEILNCNVNSTLEEIKENYKSLILKYHPDKN----SEHQEMFLKINEAWNILKDEKERKL 59
          +E+L+    ++ E IK+ Y+ L LK+HPDKN     E +  F ++ EA+ +L D K+R +
Sbjct: 12 YEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDI 71

Query: 60 Y 60
          Y
Sbjct: 72 Y 72

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Length = 103

 Score = 61.1 bits (149), Expect = 1e-13
 Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 3/60 (5%)

Query: 4  FEILNCNVNSTLEEIKENYKSLILKYHPDKN---SEHQEMFLKINEAWNILKDEKERKLY 60
          +EIL  +  +   EI++ YK L +KYHPD+N    E +  F +I EA+ +L D ++R  Y
Sbjct: 6  YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAY 65

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 92

 Score = 60.8 bits (148), Expect = 1e-13
 Identities = 23/61 (37%), Positives = 40/61 (65%), Gaps = 4/61 (6%)

Query: 4  FEILNCNVNSTLEEIKENYKSLILKYHPDKN----SEHQEMFLKINEAWNILKDEKERKL 59
          +E+L    +++ E+IK+ Y+ L L++HPDKN     E ++ F  ++EA+ +L D K+R L
Sbjct: 12 YEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSL 71

Query: 60 Y 60
          Y
Sbjct: 72 Y 72

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Length = 94

 Score = 60.9 bits (148), Expect = 2e-13
 Identities = 23/66 (34%), Positives = 40/66 (60%), Gaps = 9/66 (13%)

Query: 4  FEILNCNVNSTLEEIKENYKSLILKYHPDKNS---------EHQEMFLKINEAWNILKDE 54
          + IL  + ++ + ++K+ Y+ LIL YHPDK S         E  + F++I++AW IL +E
Sbjct: 19 YSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNE 78

Query: 55 KERKLY 60
          + +K Y
Sbjct: 79 ETKKKY 84

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 77

 Score = 60.3 bits (147), Expect = 2e-13
 Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 4  FEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQ--EMFLKINEAWNILKDEKERKLY 60
          ++ L     ++ EEIK  Y+   L+YHPDKN E    E F +I EA+++L D ++R+++
Sbjct: 6  YQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIF 64

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 60.9 bits (148), Expect = 2e-13
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 4  FEILNCNVNSTLEEIKENYKSLILKYHPDKNS---EHQEMFLKINEAWNILKDEKERKLY 60
          +++L     +T  +IK  Y      YHPD+NS   E  E F +I++A+ +L     R+ Y
Sbjct: 20 YDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKY 79

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 60.0 bits (146), Expect = 2e-13
 Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 3/60 (5%)

Query: 4  FEILNCNVNSTLEEIKENYKSLILKYHPDKN---SEHQEMFLKINEAWNILKDEKERKLY 60
          ++IL    N++ +EIK+ Y  L  KYHPD N    + +E F ++ EA+ +L DE +RK Y
Sbjct: 10 YQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQY 69

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Length = 99

 Score = 60.0 bits (146), Expect = 4e-13
 Identities = 20/61 (32%), Positives = 42/61 (68%), Gaps = 4/61 (6%)

Query: 4  FEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQE----MFLKINEAWNILKDEKERKL 59
          +EIL+   +++ ++IK+ Y+   L++HPDKN +++E     F ++ EA+ +L D+ +R++
Sbjct: 5  YEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREI 64

Query: 60 Y 60
          Y
Sbjct: 65 Y 65

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 59.6 bits (145), Expect = 4e-13
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 4  FEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQ--EMFLKINEAWNILKDEKERKLY 60
          +EIL  +  ++ E++K+ Y+ L LK+HPDKN      E F  I  A+ +L + ++RK Y
Sbjct: 10 YEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQY 68

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 59.2 bits (144), Expect = 6e-13
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 2/59 (3%)

Query: 4  FEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQ--EMFLKINEAWNILKDEKERKLY 60
          ++IL    +++  +IK+ +  L +KYHPDKN        F +I EA+  L D   RK Y
Sbjct: 10 YDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEY 68

>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A Length = 83

 Score = 59.1 bits (143), Expect = 6e-13
 Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 4/60 (6%)

Query: 72  MNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEI 131
           ++ Y  + + DM  + E+QMFTYPC CG  F I   D   +G     +  C +CSL++++
Sbjct: 2   VSTYDEIEIEDMTFEPENQMFTYPCPCGDRFQIYLDDMF-EGEK---VAVCPSCSLMIDV 57

>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.17.1 Length = 83

 Score = 57.6 bits (139), Expect = 2e-12
 Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 4/66 (6%)

Query: 66  SQQQTHMNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDGSDDNILIACDTC 125
           S        +  V + D ++  +S+ + YPC CG  F I ++D E    +   +  C +C
Sbjct: 3   SGSSGMAVFHDEVEIEDFQYDEDSETYFYPCPCGDNFAITKEDLE----NGEDVATCPSC 58

Query: 126 SLLLEI 131
           SL++++
Sbjct: 59  SLIIKV 64

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329

 Score = 61.1 bits (149), Expect = 3e-12
 Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 5  EILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQ--EMFLKINEAWNILKDEKERKLY 60
           IL       L+ IK  Y+ L  KYHPD + E+     F  + EAW +LKDE+ R  Y
Sbjct: 32 AILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEY 89

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Length = 109

 Score = 57.8 bits (140), Expect = 4e-12
 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 7/81 (8%)

Query: 2  NHFEILNCNVNS-TLEEIKENYKSLILKYHPDKN------SEHQEMFLKINEAWNILKDE 54
          N +++L  N      +++ + Y++L  K+HPD+          +E F  I  A+  LKD+
Sbjct: 16 NCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDD 75

Query: 55 KERKLYESQLLSQQQTHMNIY 75
          + +  Y+  L    Q   N Y
Sbjct: 76 EAKTNYDYYLDHPDQRFYNYY 96

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 60.9 bits (147), Expect = 5e-12
 Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 3/87 (3%)

Query: 4   FEILNCNVNSTLEEIKENYKSLILKYHPDKNSEH---QEMFLKINEAWNILKDEKERKLY 60
           + +L  +  ++  EI++ +K L LK HPDKN  +      FLKIN A+ +LKDE  RK Y
Sbjct: 24  YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKY 83

Query: 61  ESQLLSQQQTHMNIYKSVSLSDMEHKG 87
           +       + +               G
Sbjct: 84  DKYGEKGLEDNQGGQYESWSYYRYDFG 110

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Length = 181

 Score = 58.1 bits (140), Expect = 1e-11
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 7/70 (10%)

Query: 2  NHFEILNCNVNSTL-------EEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDE 54
            +E+        L         +++ Y+ L  ++HPD   +  E    +N+A++ LKD 
Sbjct: 12 TFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDP 71

Query: 55 KERKLYESQL 64
            R  Y  +L
Sbjct: 72 LRRSQYMLKL 81

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Length = 114

 Score = 55.6 bits (134), Expect = 2e-11
 Identities = 9/52 (17%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 10 NVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYE 61
          +    +  +++ Y     ++HPDK  + +E   K+N  +  ++D  +     
Sbjct: 19 SAWGNIPLMRKAYLKKCKEFHPDKGGD-EEKMKKMNTLYKKMEDGVKYAHQP 69

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Length = 182

 Score = 57.2 bits (137), Expect = 2e-11
 Identities = 15/53 (28%), Positives = 33/53 (62%), Gaps = 6/53 (11%)

Query: 14  TLEEIKENYKSLILKYHPDKNSEH------QEMFLKINEAWNILKDEKERKLY 60
           T E++K+ Y+  +L  HPDK +        + +F+++N+AW+  +++ ++ LY
Sbjct: 130 TPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 182

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Length = 71

 Score = 53.9 bits (130), Expect = 5e-11
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 2/56 (3%)

Query: 4  FEILNCNVNS-TLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERK 58
           +ILN   N+ T +++KE ++ ++L  HPDK      +  KINEA + L+     K
Sbjct: 17 LQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSP-FLATKINEAKDFLEKRGISK 71

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Length = 174

 Score = 55.7 bits (134), Expect = 8e-11
 Identities = 10/63 (15%), Positives = 27/63 (42%), Gaps = 3/63 (4%)

Query: 1  MNHFEILNCNVN--STLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERK 58
          +   ++L    +    +  +++ Y     ++HPDK  + +E   K+N  +  ++D  +  
Sbjct: 11 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD-EEKMKKMNTLYKKMEDGVKYA 69

Query: 59 LYE 61
             
Sbjct: 70 HQP 72

>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR {Homo sapiens} Length = 89

 Score = 53.7 bits (129), Expect = 1e-10
 Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 4/58 (6%)

Query: 74  IYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEI 131
            +  V + D ++  +S+ + YPC CG  F I ++D E    +   +  C +CSL++++
Sbjct: 4   FHDEVEIEDFQYDEDSETYFYPCPCGDNFSITKEDLE----NGEDVATCPSCSLIIKV 57

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Length = 171

 Score = 55.0 bits (132), Expect = 1e-10
 Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 10/74 (13%)

Query: 1  MNHFEILNCNVNSTL--EEIKENYKSLILKYHPDKNSEHQE--------MFLKINEAWNI 50
          M++F +        L  + +   ++ L  +YHPDK +   +            IN+AW  
Sbjct: 1  MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQT 60

Query: 51 LKDEKERKLYESQL 64
          L+    R  Y   L
Sbjct: 61 LRHPLMRAEYLLSL 74

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 88

 Score = 51.3 bits (123), Expect = 7e-10
 Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 7/61 (11%)

Query: 5  EILNCNVNSTLEEIKENYKSLILKYHPDKN----SEHQEMFLKINEAWNILKDEKERKLY 60
           ++         E K+  + L LK+HPDKN        E+F  +    N L   +++   
Sbjct: 20 SVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRL---EKQAFL 76

Query: 61 E 61
          +
Sbjct: 77 D 77

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Length = 79

 Score = 46.9 bits (111), Expect = 3e-08
 Identities = 12/56 (21%), Positives = 18/56 (32%), Gaps = 1/56 (1%)

Query: 13 STLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQ 68
               +++ YK   L  HPDK      +  ++N  W   K E             Q
Sbjct: 25 GDFGRMQQAYKQQSLLLHPDKGGS-HALMQELNSLWGTFKTEVYNLRMNLGGTGFQ 79

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 47.8 bits (114), Expect = 1e-07
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 6/61 (9%)

Query: 6   ILNCNVNSTLEEIKENYKSLILKYHPDKNSEH------QEMFLKINEAWNILKDEKERKL 59
           IL    N+  +EI + Y+ L L++HPD           ++ F+ I  A  +L D + RK 
Sbjct: 387 ILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKK 446

Query: 60  Y 60
           +
Sbjct: 447 F 447

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A Length = 92

 Score = 44.6 bits (105), Expect = 3e-07
 Identities = 11/45 (24%), Positives = 26/45 (57%), Gaps = 6/45 (13%)

Query: 16 EEIKENYKSLILKYHPDKNSEHQE------MFLKINEAWNILKDE 54
          E++K+ Y+  +L  HP K +          +F+++N+AW+  +++
Sbjct: 48 EQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFENQ 92

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} Length = 207

 Score = 43.9 bits (103), Expect = 2e-06
 Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 10/71 (14%)

Query: 1   MNHFEILNCNVNSTL--EEIKENYKSLILKYHPDKNSEHQE--------MFLKINEAWNI 50
            ++F +++CN +  +   +++  Y+ L    HPD  S+  +            +N+A+  
Sbjct: 43  RDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKT 102

Query: 51  LKDEKERKLYE 61
           L     R LY 
Sbjct: 103 LLAPLSRGLYL 113

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana} Length = 106

 Score = 41.9 bits (98), Expect = 5e-06
 Identities = 10/51 (19%), Positives = 22/51 (43%), Gaps = 10/51 (19%)

Query: 14  TLEEIKENYKSLILKYHPDKNSEH----------QEMFLKINEAWNILKDE 54
               ++++Y+  +L  HPDK  +           +++F  + EAW+     
Sbjct: 53  EGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTL 103

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	134
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	100.0
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	99.89
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	99.89
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	99.88
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	99.87
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	99.87
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	99.87
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	99.87
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	99.87
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	99.86
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	99.86
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	99.86
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	99.86
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	99.86
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	99.86
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	99.84
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	99.84
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.81
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	99.8
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	99.79
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	99.79
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	99.77
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	99.76
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	99.76
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	99.75
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	99.73
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	99.72
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	99.71
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	99.7
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	99.69
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	99.69
2guz_A	71	Mitochondrial import inner membrane translocase su	99.69
2jr7_A	89	DPH3 homolog; DESR1, CSL zinc finger, metal bindin	99.67
1yop_A	83	KTI11P; zinc finger, metal binding protein; NMR {S	99.66
1wge_A	83	Hypothetical protein 2610018L09RIK; diphthamide,CS	99.66
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.65
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.17
2guz_B	65	Mitochondrial import inner membrane translocase su	99.02
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	93.51
4ayb_P	48	DNA-directed RNA polymerase; transferase, multi-su	93.34
2e2z_A	100	TIM15; protein import, zinc finger, protein transp	91.01
2avu_E	192	Flagellar transcriptional activator FLHC; C4-type	86.81

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}

Probab=100.00  E-value=3.7e-37  Score=217.38  Aligned_cols=128  Identities=31%  Similarity=0.679  Sum_probs=113.9

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCCC--H-------HHHHHHHHHHHHHHhccChHHHHHHHHHhhhhhhcc
Q psy7114           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKN--S-------EHQEMFLKINEAWNILKDEKERKLYESQLLSQQQTH   71 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk~--~-------~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~   71 (134)
                      +|||+||||+++|+.++||++||++++++||||.  .       .+.+.|+.|++||++|+||.+|+.||..+.......
T Consensus        10 ~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~~~~~~~   89 (155)
T 2l6l_A           10 KDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRCEDDLRN   89 (155)
T ss_dssp             SHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHHHHHHHT
T ss_pred             CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcchhhccc
Confidence            4799999999999999999999999999999991  1       357899999999999999999999999887765543


Q ss_pred             -cccccccCcccccccCCceeEEeeCCCCCeEEEecccccCCCCCCceeEeCCCCcceEEEec
Q psy7114          72 -MNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEITA  133 (134)
Q Consensus        72 -~~~~~~~~~~~~~~~~~~~~~~~~crcg~~~~v~~~~l~~g~~~~~~~v~C~~Csl~i~v~~  133 (134)
                       ++....+.+++|.+.++...|+++||||+.|.++.+++..|     .+|.|++|||||.|..
T Consensus        90 ~~~~~~~~~~~~m~~~e~~~~f~~~CrCG~~f~i~~~~l~~~-----~~v~C~sCSl~~~v~~  147 (155)
T 2l6l_A           90 VGPVDAQVYLEEMSWNEGDHSFYLSCRCGGKYSVSKDEAEEV-----SLISCDTCSLIIELLH  147 (155)
T ss_dssp             TCSSSEEEETTTSEEETTTTEEEEECSSSCEEEEETTHHHHC-----CEEECSSSSCEEEEEC
T ss_pred             cccccceeeHHHhccccCCcEEEEcCCCCCeEEecHHHhCCC-----CEEECCCCceEEEEEE
Confidence             55566777889999988899999999999999999999875     6899999999999963

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.89  E-value=3.8e-23  Score=129.73  Aligned_cols=68  Identities=29%  Similarity=0.534  Sum_probs=63.3

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHHHhccChHHHHHHHHHhhhhh
Q psy7114           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK--NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQ   68 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk--~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   68 (134)
                      .|||+||||+++|+.++||++|+++++++|||+  .+.+.+.|+.|++||++|+||.+|..||.++.+..
T Consensus         3 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   72 (77)
T 1hdj_A            3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGL   72 (77)
T ss_dssp             CCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGC
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHHccccc
Confidence            489999999999999999999999999999999  45788999999999999999999999999887643

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A

Probab=99.89  E-value=1.9e-23  Score=129.95  Aligned_cols=65  Identities=32%  Similarity=0.668  Sum_probs=60.6

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccChHHHHHHHHHhh
Q psy7114           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQLL   65 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~   65 (134)
                      .|||+||||+++|+.++||++|+++++++|||+.+.+.+.|+.|++||++|+||.+|..||..|.
T Consensus         8 ~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~   72 (73)
T 2och_A            8 TGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQIYDQGGE   72 (73)
T ss_dssp             CCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTCHHHHHHHHHHHHHHTSHHHHHHHHHTC-
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCHHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence            47999999999999999999999999999999966667899999999999999999999999875

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.88  E-value=4.4e-23  Score=129.72  Aligned_cols=67  Identities=31%  Similarity=0.537  Sum_probs=62.8

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHHHhccChHHHHHHHHHhhhh
Q psy7114           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK--NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQ   67 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk--~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   67 (134)
                      .|||+||||+++|+.++||++|+++++++|||+  .+.+.+.|+.|++||++|+||.+|..||..+...
T Consensus         7 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~   75 (78)
T 2ctp_A            7 GDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGSGP   75 (78)
T ss_dssp             CCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHHHHHHHHTCSCS
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHcCccc
Confidence            489999999999999999999999999999999  4678999999999999999999999999987653

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.87  E-value=1.5e-22  Score=130.10  Aligned_cols=69  Identities=30%  Similarity=0.514  Sum_probs=64.2

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHHHhccChHHHHHHHHHhhhhhh
Q psy7114           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK--NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQQ   69 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk--~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~   69 (134)
                      +|||+||||+++|+.++||++|+++++++|||+  .+.+.+.|+.|++||++|+||.+|..||..+.....
T Consensus         7 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~   77 (88)
T 2ctr_A            7 GSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYDTLGHSAFT   77 (88)
T ss_dssp             CSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHHHT
T ss_pred             CCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccccc
Confidence            489999999999999999999999999999999  567889999999999999999999999999876543

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.87  E-value=6.4e-23  Score=129.24  Aligned_cols=67  Identities=34%  Similarity=0.570  Sum_probs=62.2

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHHHhccChHHHHHHHHHhhhh
Q psy7114           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK---NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQ   67 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk---~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   67 (134)
                      .|||+||||+++|+.++||++|+++++++|||+   .+.+.+.|+.|++||++|+||.+|..||.++...
T Consensus         7 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~   76 (79)
T 2dn9_A            7 GDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSGP   76 (79)
T ss_dssp             SCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCCCC
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccCcC
Confidence            489999999999999999999999999999999   3567899999999999999999999999987643

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}

Probab=99.87  E-value=1.1e-22  Score=130.85  Aligned_cols=67  Identities=27%  Similarity=0.571  Sum_probs=62.6

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHHHhccChHHHHHHHHHhhhh
Q psy7114           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK--NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQ   67 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk--~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   67 (134)
                      +|||+||||+++|+.++||++|+++++++|||+  .+.+.+.|+.|++||++|+||.+|..||.++...
T Consensus        17 ~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~   85 (88)
T 2cug_A           17 FDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYDHYGSGP   85 (88)
T ss_dssp             SCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHHHHHHHTTCC
T ss_pred             CCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHHHHHHHHcCCCC
Confidence            489999999999999999999999999999999  4578899999999999999999999999998653

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}

Probab=99.87  E-value=1.4e-22  Score=131.28  Aligned_cols=70  Identities=31%  Similarity=0.619  Sum_probs=64.4

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccChHHHHHHHHHhhhhhhc
Q psy7114           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQQT   70 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~   70 (134)
                      .|||+||||+++|+.++||++|+++++++|||+.+.+.+.|+.|++||++|+||.+|..||.++......
T Consensus         8 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~   77 (92)
T 2o37_A            8 TKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREIYDQYGLEAARS   77 (92)
T ss_dssp             CHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTSHHHHHHHHHHCHHHHHT
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHhhc
Confidence            3799999999999999999999999999999996666789999999999999999999999998876543

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.87  E-value=9e-23  Score=129.40  Aligned_cols=66  Identities=35%  Similarity=0.659  Sum_probs=61.2

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHHHHHHhccChHHHHHHHHHhhh
Q psy7114           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKN----SEHQEMFLKINEAWNILKDEKERKLYESQLLS   66 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk~----~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   66 (134)
                      +|||+||||+++|+.++||++|+++++++|||+.    +.+.+.|+.|++||++|+||.+|..||.++..
T Consensus         9 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~   78 (82)
T 2ej7_A            9 VDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSG   78 (82)
T ss_dssp             CCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCCC
T ss_pred             cCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCcc
Confidence            4899999999999999999999999999999993    35678999999999999999999999998764

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.86  E-value=2.1e-22  Score=132.12  Aligned_cols=67  Identities=30%  Similarity=0.539  Sum_probs=61.7

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHHHhccChHHHHHHHHHhhhh
Q psy7114           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK---NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQ   67 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk---~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   67 (134)
                      +|||+||||+++|+.++||++|+++++++|||+   .+.+.++|+.|++||++|+||.+|..||..+...
T Consensus        17 ~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~~   86 (99)
T 2yua_A           17 TALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGLLSD   86 (99)
T ss_dssp             SHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCCH
T ss_pred             cCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcccc
Confidence            479999999999999999999999999999999   4567899999999999999999999999876543

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}

Probab=99.86  E-value=4.2e-22  Score=130.74  Aligned_cols=68  Identities=28%  Similarity=0.551  Sum_probs=61.9

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHHHHHHhccChHHHHHHHHHhhhhh
Q psy7114           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKN----SEHQEMFLKINEAWNILKDEKERKLYESQLLSQQ   68 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk~----~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   68 (134)
                      +|||+||||+++|+.++||++|+++++++|||+.    +.+.+.|+.|++||++|+||.+|..||..+....
T Consensus         2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~~   73 (99)
T 2lgw_A            2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREGL   73 (99)
T ss_dssp             CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC--
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccc
Confidence            4899999999999999999999999999999992    4578999999999999999999999999987654

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.86  E-value=3.2e-22  Score=133.97  Aligned_cols=68  Identities=34%  Similarity=0.524  Sum_probs=63.3

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHHHhccChHHHHHHHHHhhhhh
Q psy7114           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK---NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQ   68 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk---~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   68 (134)
                      +|||+||||+++|+.++||++||++++++|||+   .+.+.++|+.|++||++|+||.+|..||..+....
T Consensus        20 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~   90 (112)
T 2ctq_A           20 EDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRSQM   90 (112)
T ss_dssp             CCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTC
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhcc
Confidence            489999999999999999999999999999999   34678999999999999999999999999988654

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.86  E-value=4.1e-22  Score=128.97  Aligned_cols=68  Identities=35%  Similarity=0.653  Sum_probs=62.6

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHHHHHHhccChHHHHHHHHHhhhhh
Q psy7114           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKN----SEHQEMFLKINEAWNILKDEKERKLYESQLLSQQ   68 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk~----~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   68 (134)
                      +|||+||||+++|+.++||++|+++++++|||+.    +.+.++|+.|++||++|+||.+|..||..+....
T Consensus         9 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   80 (92)
T 2dmx_A            9 ANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDSW   80 (92)
T ss_dssp             CCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCSS
T ss_pred             cCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccc
Confidence            4899999999999999999999999999999992    4678999999999999999999999999886543

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1

Probab=99.86  E-value=1.6e-22  Score=131.21  Aligned_cols=67  Identities=34%  Similarity=0.713  Sum_probs=62.3

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCCC---------HHHHHHHHHHHHHHHhccChHHHHHHHHHhhhh
Q psy7114           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKN---------SEHQEMFLKINEAWNILKDEKERKLYESQLLSQ   67 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk~---------~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   67 (134)
                      .|||+||||+++|+.++||++|+++++++|||+.         +.+.+.|+.|++||++|+||.+|..||..+...
T Consensus        16 ~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~~   91 (94)
T 1wjz_A           16 KDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRSGP   91 (94)
T ss_dssp             SCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSCCS
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHccCC
Confidence            4899999999999999999999999999999992         567899999999999999999999999987653

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.86  E-value=7.5e-22  Score=131.60  Aligned_cols=68  Identities=37%  Similarity=0.606  Sum_probs=63.2

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHHHhccChHHHHHHHHHhhhhh
Q psy7114           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK---NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQ   68 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk---~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   68 (134)
                      .+||+||||+++|+.++||++|+++++++|||+   .+.+.++|+.|++||++|+||.+|..||..+....
T Consensus        17 ~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~~   87 (109)
T 2ctw_A           17 ESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSLGL   87 (109)
T ss_dssp             CCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHHHH
T ss_pred             CCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhccccc
Confidence            479999999999999999999999999999999   45678999999999999999999999999887654

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A

Probab=99.84  E-value=4.1e-22  Score=131.57  Aligned_cols=68  Identities=32%  Similarity=0.592  Sum_probs=63.1

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHHHhccChHHHHHHHHHhhhhh
Q psy7114           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK---NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQ   68 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk---~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   68 (134)
                      .|||+||||+++|+.++||++|+++++++|||+   .+.+.++|+.|++||++|+||.+|..||..+....
T Consensus         3 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~   73 (103)
T 1bq0_A            3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAF   73 (103)
T ss_dssp             CCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTSS
T ss_pred             CCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhhh
Confidence            489999999999999999999999999999999   35678999999999999999999999999987654

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}

Probab=99.84  E-value=2.6e-21  Score=128.89  Aligned_cols=66  Identities=27%  Similarity=0.453  Sum_probs=61.6

Q ss_pred             CCccccccCCCCC-CHHHHHHHHHHHHHHhCCCCC------HHHHHHHHHHHHHHHhccChHHHHHHHHHhhh
Q psy7114           1 MNHFEILNCNVNS-TLEEIKENYKSLILKYHPDKN------SEHQEMFLKINEAWNILKDEKERKLYESQLLS   66 (134)
Q Consensus         1 ~~~Y~vLgv~~~a-s~~~Ik~ayr~l~~~~HPDk~------~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   66 (134)
                      +|||+||||+++| +.++||++||++++++|||+.      +.+.+.|+.|++||++|+||.+|..||..+..
T Consensus        15 ~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~~   87 (109)
T 2qsa_A           15 ENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDH   87 (109)
T ss_dssp             SCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC
T ss_pred             CCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccC
Confidence            4899999999999 999999999999999999983      45789999999999999999999999999864

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.81  E-value=1.6e-20  Score=136.61  Aligned_cols=68  Identities=38%  Similarity=0.592  Sum_probs=63.5

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHHHhccChHHHHHHHHHhhhhh
Q psy7114           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK---NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQ   68 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk---~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   68 (134)
                      +|||+||||+++|+.++||+|||++++++|||+   .+.+.++|+.|++||++|+||.+|+.||.++....
T Consensus         2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~   72 (210)
T 3apq_A            2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGL   72 (210)
T ss_dssp             CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTTC
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhccccc
Confidence            589999999999999999999999999999999   45688999999999999999999999999987654

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1

Probab=99.80  E-value=9.9e-21  Score=135.29  Aligned_cols=68  Identities=24%  Similarity=0.382  Sum_probs=61.2

Q ss_pred             CCccccccCCCCC--CHHHHHHHHHHHHHHhCCCCCH--------HHHHHHHHHHHHHHhccChHHHHHHHHHhhhhh
Q psy7114           1 MNHFEILNCNVNS--TLEEIKENYKSLILKYHPDKNS--------EHQEMFLKINEAWNILKDEKERKLYESQLLSQQ   68 (134)
Q Consensus         1 ~~~Y~vLgv~~~a--s~~~Ik~ayr~l~~~~HPDk~~--------~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   68 (134)
                      ||||+||||++++  +.++||++||++++++|||+.+        .+.+.|..|++||++|+||.+|..||..+....
T Consensus         1 ~d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~g~~   78 (171)
T 1fpo_A            1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHGFD   78 (171)
T ss_dssp             CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTTTCC
T ss_pred             CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhcCCC
Confidence            6899999999999  9999999999999999999921        245789999999999999999999999877443

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.79  E-value=2.8e-20  Score=119.99  Aligned_cols=58  Identities=19%  Similarity=0.406  Sum_probs=54.1

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHHHhccChHHHH
Q psy7114           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK--NSEHQEMFLKINEAWNILKDEKERK   58 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk--~~~~~~~f~~i~~Ay~~L~d~~~R~   58 (134)
                      .|||+||||+++|+.++||++||++++++|||+  .+.+.++|+.|++||++|+||.+|.
T Consensus        27 ~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~   86 (90)
T 2ys8_A           27 KDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSG   86 (90)
T ss_dssp             SSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHCCS
T ss_pred             CCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCccccc
Confidence            489999999999999999999999999999999  4678899999999999999998764

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}

Probab=99.77  E-value=9.7e-20  Score=133.68  Aligned_cols=67  Identities=24%  Similarity=0.355  Sum_probs=59.2

Q ss_pred             CCccccccCCCC--CCHHHHHHHHHHHHHHhCCCCCH--------HHHHHHHHHHHHHHhccChHHHHHHHHHhhhh
Q psy7114           1 MNHFEILNCNVN--STLEEIKENYKSLILKYHPDKNS--------EHQEMFLKINEAWNILKDEKERKLYESQLLSQ   67 (134)
Q Consensus         1 ~~~Y~vLgv~~~--as~~~Ik~ayr~l~~~~HPDk~~--------~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   67 (134)
                      +|||+||||+++  ++.++||++||+|++++|||+.+        .+.++|+.|++||++|+||.+|..||..+...
T Consensus        43 ~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~~l~G~  119 (207)
T 3bvo_A           43 RDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLHGI  119 (207)
T ss_dssp             CCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTC
T ss_pred             CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhcCC
Confidence            589999999986  78999999999999999999921        25678999999999999999999999876643

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=99.76  E-value=3.9e-20  Score=144.10  Aligned_cols=66  Identities=33%  Similarity=0.629  Sum_probs=0.0

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHHHhccChHHHHHHHHHhhh
Q psy7114           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK--NSEHQEMFLKINEAWNILKDEKERKLYESQLLS   66 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk--~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   66 (134)
                      +|||+||||+++|+.++||+|||+|++++|||+  .+.+.++|++|++||++|+||.+|+.||.++..
T Consensus        28 ~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~   95 (329)
T 3lz8_A           28 KDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQH   95 (329)
T ss_dssp             --------------------------------------------------------------------
T ss_pred             cCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhhhhhhhcccchhhcc
Confidence            489999999999999999999999999999999  456788999999999999999999999998544

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1

Probab=99.76  E-value=2.5e-21  Score=129.97  Aligned_cols=64  Identities=16%  Similarity=0.230  Sum_probs=58.3

Q ss_pred             CCccccccCCCCCCH--HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccChHHHHHHHHHhh
Q psy7114           1 MNHFEILNCNVNSTL--EEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQLL   65 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~--~~Ik~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~   65 (134)
                      +++|+||||+++|+.  ++||+|||+|++++|||+.+. .++|++|++||++|+||.+|+.||.++.
T Consensus         8 ~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~-~e~f~~I~~AYevL~d~~~R~~~~~~~~   73 (114)
T 1gh6_A            8 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD-EEKMKKMNTLYKKMEDGVKYAHQPDFGG   73 (114)
T ss_dssp             HHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT-TTTTHHHHHHHHHHHHHHHSCCSSCCSC
T ss_pred             hhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc-HHHHHHHHHHHHHHCCHHHHHHhhhccc
Confidence            368999999999999  999999999999999999554 5789999999999999999999987654

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C

Probab=99.75  E-value=3.7e-20  Score=132.32  Aligned_cols=64  Identities=16%  Similarity=0.238  Sum_probs=57.1

Q ss_pred             CccccccCCCCCC--HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccChHHHHHHHHHhhh
Q psy7114           2 NHFEILNCNVNST--LEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQLLS   66 (134)
Q Consensus         2 ~~Y~vLgv~~~as--~~~Ik~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   66 (134)
                      |+|+||||+++|+  .++||+|||++++++|||+.+. .++|++|++||++|+||.+|+.||.++..
T Consensus        12 d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~-~e~F~~I~~AYevLsdp~kR~~YD~~G~~   77 (174)
T 2pf4_E           12 QLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD-EEKMKKMNTLYKKMEDGVKYAHQPDFGGF   77 (174)
T ss_dssp             HHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C-CTTTTHHHHHHHHHHHHHHHHTSCGGGGC
T ss_pred             cHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC-HHHHHHHHHHHHHhCCHHHHHHHhccCCc
Confidence            6899999999999  5999999999999999999544 57899999999999999999999998863

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1

Probab=99.73  E-value=3.8e-19  Score=112.15  Aligned_cols=57  Identities=23%  Similarity=0.424  Sum_probs=52.4

Q ss_pred             CccccccCCCC--CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccChHHHHH
Q psy7114           2 NHFEILNCNVN--STLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKL   59 (134)
Q Consensus         2 ~~Y~vLgv~~~--as~~~Ik~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~   59 (134)
                      ++|+||||+++  ++.++||++||++++++|||+.. +.++|++|++||++|+|+.+|..
T Consensus        12 ~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~-~~~~f~~i~~AYe~L~~~~~r~~   70 (79)
T 1faf_A           12 RLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGG-SHALMQELNSLWGTFKTEVYNLR   70 (79)
T ss_dssp             HHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSC-CHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CHHHHHHHHHHHHHHhhHHHHHH
Confidence            57999999999  99999999999999999999854 36789999999999999998876

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A

Probab=99.72  E-value=1.6e-18  Score=124.86  Aligned_cols=64  Identities=23%  Similarity=0.432  Sum_probs=58.8

Q ss_pred             CCccccc------cCCC-CCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccChHHHHHHHHHh
Q psy7114           1 MNHFEIL------NCNV-NSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQL   64 (134)
Q Consensus         1 ~~~Y~vL------gv~~-~as~~~Ik~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~   64 (134)
                      +|||+||      |+++ +|+.++||++||++++++|||+.+.+.+.|+.|++||++|+||.+|..||..+
T Consensus        11 ~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~a~~~f~~i~~AY~vL~dp~~R~~Yd~~l   81 (181)
T 3uo3_A           11 STFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPLRRSQYMLKL   81 (181)
T ss_dssp             CCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCSCSSGGGSHHHHHHHHHSHHHHHHHHHHH
T ss_pred             CCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCccHHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence            4899999      4665 89999999999999999999995557889999999999999999999999987

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.71  E-value=1.3e-18  Score=111.72  Aligned_cols=56  Identities=25%  Similarity=0.307  Sum_probs=50.9

Q ss_pred             CccccccCCCCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHHHHHHhccChHHH
Q psy7114           2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDKN----SEHQEMFLKINEAWNILKDEKER   57 (134)
Q Consensus         2 ~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk~----~~~~~~f~~i~~Ay~~L~d~~~R   57 (134)
                      ++|+||||+++|+.++||++||++++++|||+.    +.+.++|+.|++||++|++...|
T Consensus        17 ~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r   76 (88)
T 1iur_A           17 EVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFL   76 (88)
T ss_dssp             HHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhccc
Confidence            579999999999999999999999999999993    34789999999999999987654

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J

Probab=99.70  E-value=1.9e-18  Score=124.21  Aligned_cols=59  Identities=25%  Similarity=0.564  Sum_probs=54.2

Q ss_pred             CccccccCCCCCCHHHHHHHHHHHHHHhCCCC---CH---HHHHHHHHHHHHHHhccChHHHHHH
Q psy7114           2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDK---NS---EHQEMFLKINEAWNILKDEKERKLY   60 (134)
Q Consensus         2 ~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk---~~---~~~~~f~~i~~Ay~~L~d~~~R~~Y   60 (134)
                      ++|+||||+++|+.++||++||++++++||||   .+   .+.+.|+.|++||++|+|+.+|..|
T Consensus       118 d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y  182 (182)
T 1n4c_A          118 TKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY  182 (182)
T ss_dssp             CCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             chhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence            79999999999999999999999999999999   22   2788999999999999999998765

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}

Probab=99.69  E-value=8.5e-18  Score=111.41  Aligned_cols=54  Identities=19%  Similarity=0.343  Sum_probs=48.8

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCH----------HHHHHHHHHHHHHHhccChH
Q psy7114           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKNS----------EHQEMFLKINEAWNILKDEK   55 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk~~----------~~~~~f~~i~~Ay~~L~d~~   55 (134)
                      .+||+|||++. ||.++||+|||++++++||||.+          .+.++|+.|++||++|+|+.
T Consensus        41 ~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~  104 (106)
T 3ag7_A           41 SGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG  104 (106)
T ss_dssp             SCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             CCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence            38999999996 99999999999999999999932          35889999999999999975

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A

Probab=99.69  E-value=4.2e-18  Score=110.06  Aligned_cols=52  Identities=23%  Similarity=0.486  Sum_probs=47.6

Q ss_pred             CccccccCCCCCCHHHHHHHHHHHHHHhCCCCCH------HHHHHHHHHHHHHHhccC
Q psy7114           2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNS------EHQEMFLKINEAWNILKD   53 (134)
Q Consensus         2 ~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk~~------~~~~~f~~i~~Ay~~L~d   53 (134)
                      ++|++|||++.||.++||+|||++++++||||.+      .+.++|+.|++||++|.+
T Consensus        34 ~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~   91 (92)
T 2qwo_B           34 TKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN   91 (92)
T ss_dssp             CSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence            6899999999999999999999999999999922      378899999999999974

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.69  E-value=1.9e-18  Score=106.79  Aligned_cols=55  Identities=31%  Similarity=0.390  Sum_probs=49.3

Q ss_pred             CccccccCCC-CCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccChHHH
Q psy7114           2 NHFEILNCNV-NSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKER   57 (134)
Q Consensus         2 ~~Y~vLgv~~-~as~~~Ik~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R   57 (134)
                      ++|+||||++ +|+.++||++||++++++|||+. ++.+.|++|++||++|+++..|
T Consensus        15 ~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~-g~~~~f~~i~~Aye~L~~~~~r   70 (71)
T 2guz_A           15 EALQILNLTENTLTKKKLKEVHRKIMLANHPDKG-GSPFLATKINEAKDFLEKRGIS   70 (71)
T ss_dssp             HHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGT-CCHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHhhhhhc
Confidence            5799999999 79999999999999999999984 4467999999999999987654

>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR {Homo sapiens}

Probab=99.67  E-value=3e-17  Score=104.67  Aligned_cols=57  Identities=28%  Similarity=0.703  Sum_probs=52.5

Q ss_pred             ccccccCcccccccCCceeEEeeCCCCCeEEEecccccCCCCCCceeEeCCCCcceEEEec
Q psy7114          73 NIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEITA  133 (134)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~crcg~~~~v~~~~l~~g~~~~~~~v~C~~Csl~i~v~~  133 (134)
                      .+++.+.+++|.|+++...|.++||||+.|.|+.+++..|    ..++.|++|||||+|+.
T Consensus         3 ~vydeV~LeDm~~de~~~~y~ypCrCGd~F~IteedLe~g----e~iv~C~sCSL~IkV~y   59 (89)
T 2jr7_A            3 VFHDEVEIEDFQYDEDSETYFYPCPCGDNFSITKEDLENG----EDVATCPSCSLIIKVIY   59 (89)
T ss_dssp             SCSCEEETTTSEEETTTTEEEEECTTSSEEEEEHHHHHHT----CCEEECTTTCCEEEEEC
T ss_pred             cceeEEEHHHcEEcCCCCEEEEcCCCCCEEEECHHHHhCC----CEEEECCCCccEEEEEE
Confidence            3567889999999998899999999999999999999988    78999999999999975

>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A

Probab=99.66  E-value=4.1e-17  Score=103.00  Aligned_cols=56  Identities=36%  Similarity=0.775  Sum_probs=52.2

Q ss_pred             cccccCcccccccCCceeEEeeCCCCCeEEEecccccCCCCCCceeEeCCCCcceEEEec
Q psy7114          74 IYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEITA  133 (134)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~crcg~~~~v~~~~l~~g~~~~~~~v~C~~Csl~i~v~~  133 (134)
                      +++.+.+++|.|+++.+.|.++||||+.|.|+.+++..|    ..++.|++|||||+|+.
T Consensus         4 ~~dev~leDm~~de~~~~y~ypCrCGd~F~it~edL~~g----e~iv~C~sCSL~I~V~~   59 (83)
T 1yop_A            4 TYDEIEIEDMTFEPENQMFTYPCPCGDRFQIYLDDMFEG----EKVAVCPSCSLMIDVVF   59 (83)
T ss_dssp             CSBCCBGGGSEEETTTTEEEEEETTTEEEEEEHHHHHTT----CCEEECSSSCCEEECBC
T ss_pred             eeeEEEHHHcEEcCCCCEEEEeCCCCCeEEECHHHHhCC----CEEEECCCCccEEEEEE
Confidence            567889999999998889999999999999999999988    88999999999999975

>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.17.1

Probab=99.66  E-value=6.8e-17  Score=102.00  Aligned_cols=58  Identities=28%  Similarity=0.689  Sum_probs=53.5

Q ss_pred             cccccccCcccccccCCceeEEeeCCCCCeEEEecccccCCCCCCceeEeCCCCcceEEEec
Q psy7114          72 MNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEITA  133 (134)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~crcg~~~~v~~~~l~~g~~~~~~~v~C~~Csl~i~v~~  133 (134)
                      +.++..+.+++|.++++...|.|+||||+.|.|+.++|..|    ..++.|++|||||+|+.
T Consensus         9 ~~~~dev~LeDm~~de~~~~y~y~CrCGd~F~it~edL~~g----e~iv~C~sCSL~I~V~~   66 (83)
T 1wge_A            9 AVFHDEVEIEDFQYDEDSETYFYPCPCGDNFAITKEDLENG----EDVATCPSCSLIIKVIY   66 (83)
T ss_dssp             CCCSCEEEGGGSCCBTTTTEEEECCSSSSCEEEEHHHHHTT----CCEEECTTTCCEEEEEC
T ss_pred             ceeeEEEEHHHceEccCCCEEEEeCCCCCEEEECHHHHhCC----CEEEECCCCceEEEEEe
Confidence            45678899999999998899999999999999999999988    78999999999999975

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.65  E-value=1e-17  Score=141.68  Aligned_cols=68  Identities=38%  Similarity=0.592  Sum_probs=40.7

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHHHhccChHHHHHHHHHhhhhh
Q psy7114           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK---NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQ   68 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk---~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   68 (134)
                      +|||+||||+++||.++||+|||++++++|||+   .+.+.++|+.|++||++|+||.+|+.||.++....
T Consensus        21 ~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~~   91 (780)
T 3apo_A           21 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGL   91 (780)
T ss_dssp             --CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC-----
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhccccc
Confidence            489999999999999999999999999999999   34578899999999999999999999999887554

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.17  E-value=1.5e-11  Score=95.28  Aligned_cols=62  Identities=31%  Similarity=0.590  Sum_probs=53.0

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCC--C----HHHHHHHHHHHHHHHhccChHHHHHHHH
Q psy7114           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK--N----SEHQEMFLKINEAWNILKDEKERKLYES   62 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk--~----~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~   62 (134)
                      .++|.+||+.+.++.++|+++|+++++++|||+  .    ..+.++|+.|.+||++|+||++|..||.
T Consensus       382 ~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~  449 (450)
T 2y4t_A          382 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD  449 (450)
T ss_dssp             CCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred             hhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence            378999999999999999999999999999998  2    3478899999999999999999999996

>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.02  E-value=1.4e-10  Score=70.05  Aligned_cols=50  Identities=22%  Similarity=0.211  Sum_probs=43.5

Q ss_pred             cccccCCCC---CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccCh
Q psy7114           4 FEILNCNVN---STLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDE   54 (134)
Q Consensus         4 Y~vLgv~~~---as~~~Ik~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~   54 (134)
                      |.||||+++   ++.++|+++||+|+..+|||+. ++.-....|++|+++|...
T Consensus         7 ~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkG-GS~yl~~ki~~Ake~l~~~   59 (65)
T 2guz_B            7 CKILNIEESKGDLNMDKINNRFNYLFEVNDKEKG-GSFYLQSKVYRAAERLKWE   59 (65)
T ss_dssp             HHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGT-CCHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHHHHHH
Confidence            679999999   9999999999999999999983 4456677999999998643

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=93.51  E-value=0.047  Score=45.33  Aligned_cols=45  Identities=13%  Similarity=0.101  Sum_probs=35.7

Q ss_pred             CCccccccCCCCCCH--HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHh
Q psy7114           1 MNHFEILNCNVNSTL--EEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNI   50 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~--~~Ik~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~   50 (134)
                      +++|.+||++-++..  .+|+++||++++..+++     .+++..|..|..|
T Consensus       629 ~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~-----~~r~~lvd~a~~v  675 (681)
T 2pzi_A          629 ASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ-----RHRYTLVDMANKV  675 (681)
T ss_dssp             CSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH-----HHHHHHHHHHHHH
T ss_pred             CCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh-----HHHHHHHHHhccc
Confidence            368999999776554  67999999999966665     5678888888865

>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X

Probab=93.34  E-value=0.025  Score=31.26  Aligned_cols=32  Identities=22%  Similarity=0.546  Sum_probs=25.6

Q ss_pred             eeC-CCCCeEEEecccccCCCCCCceeEeCCCCcceEEEe
Q psy7114          94 YPC-RCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEIT  132 (134)
Q Consensus        94 ~~c-rcg~~~~v~~~~l~~g~~~~~~~v~C~~Csl~i~v~  132 (134)
                      |.| |||..|.-++-+.-.|       +.|+.|-..|...
T Consensus         4 Y~C~rCg~~fs~~el~~lP~-------IrCpyCGyrii~K   36 (48)
T 4ayb_P            4 YRCGKCWKTFTDEQLKVLPG-------VRCPYCGYKIIFM   36 (48)
T ss_dssp             -CCCCTTTTCCCCCSCCCSS-------SCCTTTCCSCEEC
T ss_pred             EEeeccCCCccHHHHhhCCC-------cccCccCcEEEEE
Confidence            789 9999988877777777       9999998877653

>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}

Probab=91.01  E-value=0.2  Score=32.00  Aligned_cols=36  Identities=25%  Similarity=0.688  Sum_probs=30.8

Q ss_pred             EEeeC-CCC--CeEEEecccccCCCCCCceeEeCCCCcceEEE
Q psy7114          92 FTYPC-RCG--AEFCIEEQDTEGDGSDDNILIACDTCSLLLEI  131 (134)
Q Consensus        92 ~~~~c-rcg--~~~~v~~~~l~~g~~~~~~~v~C~~Csl~i~v  131 (134)
                      ..+.| .|+  ....++......|    .++|.|++|..+..|
T Consensus        12 l~FTC~~C~tRs~k~iSk~aY~~G----vViv~C~gC~n~HlI   50 (100)
T 2e2z_A           12 IAFTCKKCNTRSSHTMSKQAYEKG----TVLISCPHCKVRHLI   50 (100)
T ss_dssp             EEEEETTTTEEEEEEEEHHHHHTS----EEEEECTTTCCEEES
T ss_pred             EEEEccCCCCcchhhcCHHHhhCC----EEEEEcCCCccceEe
Confidence            46788 888  5889999999999    999999999988665

>2avu_E Flagellar transcriptional activator FLHC; C4-type zinc finger, transcription activator; 3.00A {Escherichia coli} SCOP: e.64.1.1

Probab=86.81  E-value=0.4  Score=34.21  Aligned_cols=28  Identities=29%  Similarity=0.745  Sum_probs=23.0

Q ss_pred             EeeC-CCCCeEEEecccccCCCCCCceeEeCCCCcc
Q psy7114          93 TYPC-RCGAEFCIEEQDTEGDGSDDNILIACDTCSL  127 (134)
Q Consensus        93 ~~~c-rcg~~~~v~~~~l~~g~~~~~~~v~C~~Csl  127 (134)
                      ..+| +||+.|.+...+....       ..|+.|..
T Consensus       134 l~~C~~Cgg~fv~~~~~~~~~-------f~Cp~C~~  162 (192)
T 2avu_E          134 LSSCNCCGGNFITHAHQPVGS-------FACSLCQP  162 (192)
T ss_dssp             EEECTTTCCEEEEESSCCSSC-------CCCTTC--
T ss_pred             eCcCCCCCCCeeCccCCCCCC-------CcCCCCCC
Confidence            4678 9999999999998777       79999974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	134
d1ywsa1	82	g.41.17.1 (A:1-82) Diphthamide biosynthesis protei	5e-13
d1wjza_	94	a.2.3.1 (A:) CSL-type zinc finger-containing prote	2e-12
d1nz6a_	98	a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [T	4e-12
d1wgea1	70	g.41.17.1 (A:8-77) DelGEF-interacting protein 1, D	5e-12
d1fpoa1	76	a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) doma	1e-11
d1xbla_	75	a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain	2e-09
d1fafa_	79	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	2e-09
d1hdja_	77	a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9	3e-08
d1iura_	88	a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human	1e-06
d1gh6a_	114	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	1e-04

>d1ywsa1 g.41.17.1 (A:1-82) Diphthamide biosynthesis protein 3, DPH3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 82

class: Small proteins
fold: Rubredoxin-like
superfamily: CSL zinc finger
family: CSL zinc finger
domain: Diphthamide biosynthesis protein 3, DPH3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.2 bits (141), Expect = 5e-13
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 4/60 (6%)

Query: 72  MNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEI 131
           M+ Y  + + DM  + E+QMFTYPC CG  F I   D      +   +  C +CSL++++
Sbjct: 1   MSTYDEIEIEDMTFEPENQMFTYPCPCGDRFQIYLDDMF----EGEKVAVCPSCSLMIDV 56

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.4 bits (138), Expect = 2e-12
 Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 9/71 (12%)

Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNS---------EHQEMFLKINEAWNILK 52
          + + IL  + ++ + ++K+ Y+ LIL YHPDK S         E  + F++I++AW IL 
Sbjct: 17 DWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILG 76

Query: 53 DEKERKLYESQ 63
          +E+ +K Y+ Q
Sbjct: 77 NEETKKKYDLQ 87

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Length = 98

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 56.1 bits (135), Expect = 4e-12
 Identities = 15/65 (23%), Positives = 36/65 (55%), Gaps = 6/65 (9%)

Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNS------EHQEMFLKINEAWNILKDEK 55
            ++ +      T E++K+ Y+  +L  HPDK +        + +F+++N+AW+  +++ 
Sbjct: 34 TKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQG 93

Query: 56 ERKLY 60
          ++ LY
Sbjct: 94 QKPLY 98

>d1wgea1 g.41.17.1 (A:8-77) DelGEF-interacting protein 1, DelGIP1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 70

class: Small proteins
fold: Rubredoxin-like
superfamily: CSL zinc finger
family: CSL zinc finger
domain: DelGEF-interacting protein 1, DelGIP1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.1 bits (133), Expect = 5e-12
 Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 4/58 (6%)

Query: 74  IYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEI 131
            +  V + D ++  +S+ + YPC CG  F I ++D E    +   +  C +CSL++++
Sbjct: 4   FHDEVEIEDFQYDEDSETYFYPCPCGDNFAITKEDLE----NGEDVATCPSCSLIIKV 57

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 76

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 54.6 bits (131), Expect = 1e-11
 Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 10/74 (13%)

Query: 1  MNHFEILNCNVNSTL--EEIKENYKSLILKYHPDKNSE--------HQEMFLKINEAWNI 50
          M++F +        L  + +   ++ L  +YHPDK +           +    IN+AW  
Sbjct: 1  MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQT 60

Query: 51 LKDEKERKLYESQL 64
          L+    R  Y   L
Sbjct: 61 LRHPLMRAEYLLSL 74

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 75

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 48.9 bits (116), Expect = 2e-09
 Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 3/63 (4%)

Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSE---HQEMFLKINEAWNILKDEKERK 58
          +++EIL  +  +   EI++ YK L +KYHPD+N      +  F +I EA+ +L D ++R 
Sbjct: 4  DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63

Query: 59 LYE 61
           Y+
Sbjct: 64 AYD 66

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Length = 79

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

 Score = 48.8 bits (116), Expect = 2e-09
 Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 3/62 (4%)

Query: 1  MNHFEILNC--NVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERK 58
              E+L     +      +++ YK   L  HPDK   H  +  ++N  W   K E    
Sbjct: 11 ERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHA-LMQELNSLWGTFKTEVYNL 69

Query: 59 LY 60
            
Sbjct: 70 RM 71

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (108), Expect = 3e-08
 Identities = 22/61 (36%), Positives = 40/61 (65%), Gaps = 2/61 (3%)

Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSE--HQEMFLKINEAWNILKDEKERKL 59
          ++++ L     ++ EEIK  Y+   L+YHPDKN E   +E F +I EA+++L D ++R++
Sbjct: 4  DYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREI 63

Query: 60 Y 60
          +
Sbjct: 64 F 64

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (98), Expect = 1e-06
 Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 4/64 (6%)

Query: 4  FEILNCNVNSTLEEIKENYKSLILKYHPDKN----SEHQEMFLKINEAWNILKDEKERKL 59
            ++         E K+  + L LK+HPDKN        E+F  +    N L+ +     
Sbjct: 19 TSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFLDQ 78

Query: 60 YESQ 63
             +
Sbjct: 79 NADR 82

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} Length = 114

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

 Score = 36.7 bits (84), Expect = 1e-04
 Identities = 10/63 (15%), Positives = 26/63 (41%), Gaps = 3/63 (4%)

Query: 1  MNHFEILNCNVN--STLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERK 58
          +   ++L    +    +  +++ Y     ++HPDK    +E   K+N  +  ++D  +  
Sbjct: 8  LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKG-GDEEKMKKMNTLYKKMEDGVKYA 66

Query: 59 LYE 61
             
Sbjct: 67 HQP 69

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	134
d1xbla_	75	DnaJ chaperone, N-terminal (J) domain {Escherichia	99.92
d1hdja_	77	HSP40 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1wjza_	94	CSL-type zinc finger-containing protein 3 (J-domai	99.87
d1gh6a_	114	Large T antigen, the N-terminal J domain {Simian v	99.82
d1fpoa1	76	HSC20 (HSCB), N-terminal (J) domain {Escherichia c	99.82
d1fafa_	79	Large T antigen, the N-terminal J domain {Murine p	99.77
d1wgea1	70	DelGEF-interacting protein 1, DelGIP1 {Mouse (Mus	99.7
d1ywsa1	82	Diphthamide biosynthesis protein 3, DPH3 {Baker's	99.69
d1nz6a_	98	Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	99.68
d1iura_	88	Hypothetical protein KIAA0730 {Human (Homo sapiens	99.65
d2avue1	156	Flagellar transcriptional activator FlhC {Escheric	83.85

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=2.4e-25  Score=137.96  Aligned_cols=67  Identities=33%  Similarity=0.613  Sum_probs=62.5

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHHHhccChHHHHHHHHHhhhh
Q psy7114           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK---NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQ   67 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk---~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   67 (134)
                      +|||+||||+++||.++||+||+++++++|||+   .+.+.+.|..|++||+||+||.+|..||.+|...
T Consensus         3 ~dyY~vLgv~~~As~~eIk~aYr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~   72 (75)
T d1xbla_           3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAA   72 (75)
T ss_dssp             CCTTTTTCCSSSCCHHHHHHHHHHHHHHTCCTTCTTTCHHHHHHHHHHHHHHHTTSSHHHHHHHHHTTSS
T ss_pred             CCHHHHcCCCCCcCHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHhCccc
Confidence            699999999999999999999999999999999   4567788999999999999999999999998653

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.5e-24  Score=134.89  Aligned_cols=68  Identities=29%  Similarity=0.534  Sum_probs=64.0

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHHHhccChHHHHHHHHHhhhhh
Q psy7114           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK--NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQ   68 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk--~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   68 (134)
                      +|||+||||+++||.++||+||+++++++|||+  .+.+.+.|..|++||+||+||.+|+.||.++....
T Consensus         3 kdyY~iLgv~~~as~~eIk~ay~~l~~~~hPD~~~~~~~~~~~~~i~~Ay~vLsdp~~R~~YD~~g~~~~   72 (77)
T d1hdja_           3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGL   72 (77)
T ss_dssp             CCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGC
T ss_pred             CChHHHcCCCCCcCHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhh
Confidence            699999999999999999999999999999999  66788999999999999999999999999887654

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=2.2e-23  Score=134.14  Aligned_cols=65  Identities=35%  Similarity=0.719  Sum_probs=60.4

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCC---------CHHHHHHHHHHHHHHHhccChHHHHHHHHHhh
Q psy7114           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK---------NSEHQEMFLKINEAWNILKDEKERKLYESQLL   65 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk---------~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~   65 (134)
                      +|||+||||+++|+.++||++|+++++++||||         .+.+.+.|+.|++||++|+||.+|+.||..+.
T Consensus        16 ~d~Y~iLgv~~~as~~eIk~aY~~l~~~~HPDk~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d~~~R~~YD~~~~   89 (94)
T d1wjza_          16 KDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRS   89 (94)
T ss_dssp             SCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSC
T ss_pred             cChHHHcCCCCCcCHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHccC
Confidence            589999999999999999999999999999998         24577889999999999999999999998855

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

Probab=99.82  E-value=1.9e-23  Score=138.81  Aligned_cols=66  Identities=15%  Similarity=0.242  Sum_probs=58.8

Q ss_pred             CccccccCCCCC--CHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccChHHHHHHHHHhhhhh
Q psy7114           2 NHFEILNCNVNS--TLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQ   68 (134)
Q Consensus         2 ~~Y~vLgv~~~a--s~~~Ik~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   68 (134)
                      ++|+||||+++|  +.++||+||++|++++||||.+. .++|++|++||+||+||.+|+.||..+....
T Consensus         9 ~ly~iLGv~~~a~~~~~~IKkAYrkla~k~HPDk~~~-~e~F~~I~~AY~vLsd~~kR~~YD~~~~~~~   76 (114)
T d1gh6a_           9 QLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD-EEKMKKMNTLYKKMEDGVKYAHQPDFGGFWD   76 (114)
T ss_dssp             HHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT-TTTTHHHHHHHHHHHHHHHSCCSSCCSCCCC
T ss_pred             HHHHHcCCCCCCCCCHHHHHHHHHHHHHHhcccchhh-HHHHHHHHHHHHHhCCHHHHHHHhccCCCCc
Confidence            689999999999  78899999999999999999543 5689999999999999999999997665443

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=4.1e-21  Score=118.81  Aligned_cols=65  Identities=25%  Similarity=0.409  Sum_probs=57.5

Q ss_pred             CCccccccCCCCC--CHHHHHHHHHHHHHHhCCCC--------CHHHHHHHHHHHHHHHhccChHHHHHHHHHhh
Q psy7114           1 MNHFEILNCNVNS--TLEEIKENYKSLILKYHPDK--------NSEHQEMFLKINEAWNILKDEKERKLYESQLL   65 (134)
Q Consensus         1 ~~~Y~vLgv~~~a--s~~~Ik~ayr~l~~~~HPDk--------~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~   65 (134)
                      ||||+||||++.+  +.++||++|+++++++|||+        ...+...|..|++||++|+||.+|..|+..+.
T Consensus         1 lnyy~lLgl~~~~~~d~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~a~~~~~~i~~Ay~vL~dp~~R~~Yll~l~   75 (76)
T d1fpoa1           1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLH   75 (76)
T ss_dssp             CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred             CChHHHCCCCCCCCCCHHHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcc
Confidence            6999999999965  58999999999999999999        22356889999999999999999999987653

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

Probab=99.77  E-value=2.4e-20  Score=115.95  Aligned_cols=62  Identities=21%  Similarity=0.340  Sum_probs=55.8

Q ss_pred             CccccccCCCCC--CHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccChHHHHHHHHHh
Q psy7114           2 NHFEILNCNVNS--TLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQL   64 (134)
Q Consensus         2 ~~Y~vLgv~~~a--s~~~Ik~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~   64 (134)
                      ++|+||||++++  +.++||+||+++++++|||+.. +.++|++|++||++|+|+.+|..||..+
T Consensus        12 ~~y~iLgl~~~~~~~~~~IkkaYr~l~~~~HPDk~g-~~e~~~~in~Ay~~L~d~~~r~~~~~~~   75 (79)
T d1fafa_          12 RLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGG-SHALMQELNSLWGTFKTEVYNLRMNLGG   75 (79)
T ss_dssp             HHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSC-CHHHHHHHHHHHHHHHHHHHHHTTCCSS
T ss_pred             HHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCcccCC-CHHHHHHHHHHHHHHCCHHHHHHHccCC
Confidence            689999999988  8999999999999999999943 3578999999999999999999987543

>d1wgea1 g.41.17.1 (A:8-77) DelGEF-interacting protein 1, DelGIP1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Rubredoxin-like
superfamily: CSL zinc finger
family: CSL zinc finger
domain: DelGEF-interacting protein 1, DelGIP1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=5.8e-18  Score=101.77  Aligned_cols=56  Identities=29%  Similarity=0.731  Sum_probs=52.1

Q ss_pred             cccccCcccccccCCceeEEeeCCCCCeEEEecccccCCCCCCceeEeCCCCcceEEEec
Q psy7114          74 IYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEITA  133 (134)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~crcg~~~~v~~~~l~~g~~~~~~~v~C~~Csl~i~v~~  133 (134)
                      +++.+++++|.|+++...|.++||||+.|.|+.++|..|    ..++.|++|||||+|+.
T Consensus         4 ~~dev~leD~~~dee~~~~~ypCpCGd~F~it~~dLe~g----e~V~~C~sCSL~ikVif   59 (70)
T d1wgea1           4 FHDEVEIEDFQYDEDSETYFYPCPCGDNFAITKEDLENG----EDVATCPSCSLIIKVIY   59 (70)
T ss_dssp             CSCEEEGGGSCCBTTTTEEEECCSSSSCEEEEHHHHHTT----CCEEECTTTCCEEEEEC
T ss_pred             eEEEEEeeeeeEeCCCCEEEeCCCCCCeEEECHHHHhCC----CeEEeCCCCceEEEEEE
Confidence            457789999999999999999999999999999999998    88999999999999974

>d1ywsa1 g.41.17.1 (A:1-82) Diphthamide biosynthesis protein 3, DPH3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: CSL zinc finger
family: CSL zinc finger
domain: Diphthamide biosynthesis protein 3, DPH3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.69  E-value=6.1e-18  Score=104.60  Aligned_cols=56  Identities=36%  Similarity=0.775  Sum_probs=52.5

Q ss_pred             cccccCcccccccCCceeEEeeCCCCCeEEEecccccCCCCCCceeEeCCCCcceEEEec
Q psy7114          74 IYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEITA  133 (134)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~crcg~~~~v~~~~l~~g~~~~~~~v~C~~Csl~i~v~~  133 (134)
                      .++.+.+++|.|+++...|.++||||+.|.|+.++|..|    ..++.|++|||||+|+.
T Consensus         3 ~ydev~LeDm~~ded~~~~~ypCrCGd~F~it~~dLe~g----e~v~~C~sCSL~IrVif   58 (82)
T d1ywsa1           3 TYDEIEIEDMTFEPENQMFTYPCPCGDRFQIYLDDMFEG----EKVAVCPSCSLMIDVVF   58 (82)
T ss_dssp             CCCEEETTTSEEETTTTEEEECCSSSSCEEEEHHHHHTT----CCEEEETTTTEEEEEEC
T ss_pred             cccEEEecceEEeCCCCEEEeccccCCeEEEcHHHHhCC----CeEEeCCCCceEEEEEe
Confidence            567889999999999999999999999999999999998    88999999999999974

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.68  E-value=1.1e-18  Score=112.66  Aligned_cols=59  Identities=25%  Similarity=0.561  Sum_probs=53.8

Q ss_pred             CccccccCCCCCCHHHHHHHHHHHHHHhCCCC--C----HHHHHHHHHHHHHHHhccChHHHHHH
Q psy7114           2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDK--N----SEHQEMFLKINEAWNILKDEKERKLY   60 (134)
Q Consensus         2 ~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk--~----~~~~~~f~~i~~Ay~~L~d~~~R~~Y   60 (134)
                      ++|++|||+..++.++||+||+++++.+|||+  .    ..+.+.|+.|++||++|+||.+|..|
T Consensus        34 ~~y~~Lgl~~~~t~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~I~~Ay~~L~d~~~R~~Y   98 (98)
T d1nz6a_          34 TKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY   98 (98)
T ss_dssp             CSCCCCCGGGCCSHHHHHHHHHHHHHHSCHHHHTTSTTHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred             cCCeecCCCccCCHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHCCHHHHhcC
Confidence            57999999999999999999999999999998  1    23678899999999999999998765

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=5.2e-18  Score=107.32  Aligned_cols=53  Identities=26%  Similarity=0.346  Sum_probs=48.4

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHHHHHHhccC
Q psy7114           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKN----SEHQEMFLKINEAWNILKD   53 (134)
Q Consensus         1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk~----~~~~~~f~~i~~Ay~~L~d   53 (134)
                      +++|+||||+++||.++||+||+++++++|||+.    ..+.++|+.|++||++|++
T Consensus        16 ~~~y~iL~v~~~as~~eIKkAYrrl~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~~   72 (88)
T d1iura_          16 KEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEK   72 (88)
T ss_dssp             HHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHH
Confidence            3689999999999999999999999999999992    3578899999999999974

>d2avue1 e.64.1.1 (E:5-160) Flagellar transcriptional activator FlhC {Escherichia coli [TaxId: 562]}

class: Multi-domain proteins (alpha and beta)
fold: FlhC-like
superfamily: FlhC-like
family: FlhC-like
domain: Flagellar transcriptional activator FlhC
species: Escherichia coli [TaxId: 562]

Probab=83.85  E-value=0.35  Score=31.74  Aligned_cols=105  Identities=21%  Similarity=0.278  Sum_probs=55.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHhCCCC--C---------HHHHHHHHHHHHHHHhccC-------hHHHHHHHHHhhhhhhcc
Q psy7114          10 NVNSTLEEIKENYKSLILKYHPDK--N---------SEHQEMFLKINEAWNILKD-------EKERKLYESQLLSQQQTH   71 (134)
Q Consensus        10 ~~~as~~~Ik~ayr~l~~~~HPDk--~---------~~~~~~f~~i~~Ay~~L~d-------~~~R~~Yd~~~~~~~~~~   71 (134)
                      .-+.+.+.+.+-|+.+-- ..|-|  .         ....-.-..+...|.-|..       .-.=+.|+.+.+......
T Consensus        28 et~Ls~~~l~rLykE~~g-~sppkG~lP~S~dWf~t~~~nihsSlf~~iY~~l~~~~~~~~i~Ali~AyrlY~e~~~~~~  106 (156)
T d2avue1          28 ETQLSRGRLIKLYKELRG-SPPPKGMLPFSTDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAE  106 (156)
T ss_dssp             HSSSCHHHHHHHHHHHSS-SCCCCSCCCCCTHHHHSSHHHHHHHHHHHHHHHHHHTTTCCSHHHHHHHHHHHHHHCCCCS
T ss_pred             HHCcCHHHHHHHHHHHhC-CCCCCCcCCCcchhhcccchhhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhccccc
Confidence            346688899999987632 23334  1         1112222234445544432       123456777765432211


Q ss_pred             cccccccCcccc-----cccCCceeEEeeC-CCCCeEEEecccccCCCCCCceeEeCCCC
Q psy7114          72 MNIYKSVSLSDM-----EHKGESQMFTYPC-RCGAEFCIEEQDTEGDGSDDNILIACDTC  125 (134)
Q Consensus        72 ~~~~~~~~~~~~-----~~~~~~~~~~~~c-rcg~~~~v~~~~l~~g~~~~~~~v~C~~C  125 (134)
                      .  ....++...     +++.+. ---.+| +||+.|.....+....       ..|+.|
T Consensus       107 ~--~~~ls~tRAw~Lvr~~~sg~-L~l~~C~~C~g~fv~~~~~~~~~-------~~Cp~C  156 (156)
T d2avue1         107 E--GPLLALTRAWTLVRFVESGL-LQLSSCNCCGGNFITHAHQPVGS-------FACSLC  156 (156)
T ss_dssp             S--CCSSCHHHHHHHHHHHHTTS-EEEEECTTTCCEEEEESSCCSSC-------CCCTTC
T ss_pred             C--CccccHhHHHHHHHHhccCc-eeecccCCCCCceecccccCCcC-------CcCCCC
Confidence            0  111222110     122222 234788 9999999988887776       788887