Diaphorina citri psyllid: psy7272


Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-----
VVKNEDGNIQTVAPASVIAEEAVDQLQASEKLIAELNETWEEKLKRTEEIRIQREAVFAEMGVAVKEDGNTVGVFSPQKAVDDMTDLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEITPHLVNLNEDPFMSECLIYYIKDGRTKVGSAESNLPQESQDIQLSGSHIKTEHCTFENVEGVVTLIPFQEALCYVNGRQISEPTVLNTGSRVILGKNHVFRFNHPDQVRVHRENKKNASDKSESKKDKETDGDKLN
cccccccCEEECccccccHHHcccHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccHHHHHHHccccccccccccccccEEEEEEEcccCECcccccccccccccEEECccccccccEEEECcccEEEEEEccccEEEEccEEccccEEcccccEEEEcccEEEEEccHHHHHHHHHHcccccccccccccccccccccc
***NEDGNIQTVAPASVIAEEAVDQLQASEKLIAELNETWEEKLKRTEEIRIQREAVFAEMGVAVKEDGNTVGVFS*********************************************INKSLTTLGKVISALAEITPHLVNLNEDPFMSECLIYYIKDGRTKVGSAE*NLPQESQDIQLSGSHIKTEHCTFENVEGVVTLIPFQEALCYVNGRQISEPTVLNTGSRVILGKNHVFRFNH********************************
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VVKNEDGNIQTVAPASVIxxxxxxxxxxxxxxxxxxxxxWEEKLKRTEEIRIQREAVFAEMGVAVKEDGNTVGVFSPQKAVDDMTDLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEITPHLVNLNEDPFMSECLIYYIKDGRTKVGSAESNLPQESQDIQLSGSHIKTEHCTFENVEGVVTLIPFQEALCYVNGRQISEPTVLNTGSRVILGKNHVFRFNHPDQVRVHRENKKNASDKSESKKDKETDGDKLN

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Kinesin-like protein KIF1B Isoform 1 mediates the transport of synaptic vesicles in neuronal cells.confidentO88658

Prediction of Gene Ontology Terms ?

GO Term ?Description ?Confidence Level ?Parent GO Terms ?
GO:0030054 [CC]cell junctionprobableGO:0005575
GO:0005876 [CC]spindle microtubuleprobableGO:0043234, GO:0005856, GO:0015630, GO:0032991, GO:0005575, GO:0043232, GO:0044464, GO:0005623, GO:0005622, GO:0044446, GO:0043229, GO:0005819, GO:0044430, GO:0044424, GO:0043228, GO:0005874, GO:0043226, GO:0044422
GO:0044763 [BP]single-organism cellular processprobableGO:0009987, GO:0008150, GO:0044699
GO:0031410 [CC]cytoplasmic vesicleprobableGO:0005737, GO:0031982, GO:0044464, GO:0043229, GO:0005623, GO:0005622, GO:0005575, GO:0044444, GO:0044424, GO:0043226
GO:0005730 [CC]nucleolusprobableGO:0005575, GO:0043232, GO:0031981, GO:0043233, GO:0005634, GO:0044464, GO:0031974, GO:0005622, GO:0044446, GO:0070013, GO:0043229, GO:0043228, GO:0044428, GO:0005623, GO:0044424, GO:0043227, GO:0043226, GO:0044422, GO:0043231
GO:0043005 [CC]neuron projectionprobableGO:0005575, GO:0097458, GO:0042995, GO:0044464, GO:0005623
GO:0008017 [MF]microtubule bindingprobableGO:0015631, GO:0003674, GO:0005488, GO:0005515, GO:0008092
GO:0005886 [CC]plasma membraneprobableGO:0005575, GO:0044464, GO:0016020, GO:0071944, GO:0005623

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!


Spatial Structural Prediction

Structural Models Based on Templates

Template: 4EGX, chain A
Confidence level:very confident
Coverage over the Query: 18-79,140-250
View the alignment between query and template
View the model in PyMOL
Template: 3GBJ, chain A
Confidence level:very confident
Coverage over the Query: 10-54,68-189
View the alignment between query and template
View the model in PyMOL