Diaphorina citri psyllid: psy7366

Local Sequence Feature Prediction

Prediction and Method	Result

Residue Number Marker

Protein Sequence

Secondary Structure (Consensus)

Disordered Region (Consensus)

Transmembrane Helix (Consensus)

Signal Peptide (Consensus)

Coiled Coil (COILS)

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560------

MGLTTTPKRVVTLLLTTQKVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKSMALPVSGNDLGRGDPVRSELSRALNDGSGSGIRNSARPEVSGFYNENIDGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNGTRLVAVNIWAWRIIGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNLHPVPVSLEEDDVRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS

cccccccHHHHccccccccccccccHHHHcccccccccccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHccccEEEECcccccccHHHHHHHHHHHHHHHHcccEEEEEcccHHHHHHHcccEEEEEccEEEEEccHHHHHHccccccEEccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHccccccccEEEEEccEEEEccccccccccccEEEEEccccEEEccccccccHHHHHHHHHcccccccCEEEEEcccccccHHHHHcccccccccccccccccHHHHHHHHHHccccccccHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHccccEEEEccccccccHHHHHHHHHHHHHHHHcccEEEEccccHHHHHHHHccEEEEEccEEEEEcccccccc

MGLTTTPKRVVTLLLTTQKVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKSMALPVSGNDLGRGDPVRSELSRALNDGSGSGIRNSARPEVSGFYNENIDGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNGTRLVAVNIWAWRIIGKNLTCMACHGALYSAINLSIEYKVFSRCFT***************VRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL**

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Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries

Annotation	Function Description	Confidence Level	Reference Protein
Retinal-specific ATP-binding cassette transporter	In the visual cycle, acts as an inward-directed retinoid flipase, retinoid substrates imported by ABCA4 from the extracellular or intradiscal (rod) membrane surfaces to the cytoplasmic membrane surface are all-trans-retinaldehyde (ATR) and N-retinyl-phosphatidyl-ethanolamine (NR-PE). Once transported to the cytoplasmic surface, ATR is reduced to vitamin A by trans-retinol dehydrogenase (tRDH) and then transferred to the retinal pigment epithelium (RPE) where it is converted to 11-cis-retinal. May play a role in photoresponse, removing ATR/NR-PE from the extracellular photoreceptor surfaces during bleach recovery.	confident	O35600

Prediction of Gene Ontology Terms

GO Term	Description	Confidence Level	Parent GO Terms
GO:0044765 [BP]	single-organism transport	probable	GO:0051234, GO:0006810, GO:0008150, GO:0051179, GO:0044699
GO:0044763 [BP]	single-organism cellular process	probable	GO:0009987, GO:0008150, GO:0044699
GO:0022857 [MF]	transmembrane transporter activity	probable	GO:0005215, GO:0003674
GO:0005548 [MF]	phospholipid transporter activity	probable	GO:0005319, GO:0005215, GO:0022892, GO:0003674
GO:0043231 [CC]	intracellular membrane-bounded organelle	probable	GO:0044464, GO:0005623, GO:0005622, GO:0005575, GO:0043229, GO:0044424, GO:0043227, GO:0043226
GO:0042221 [BP]	response to chemical stimulus	probable	GO:0050896, GO:0008150
GO:0016887 [MF]	ATPase activity	probable	GO:0016787, GO:0016818, GO:0003824, GO:0017111, GO:0016817, GO:0016462, GO:0003674
GO:0005524 [MF]	ATP binding	probable	GO:0043168, GO:0003674, GO:0005488, GO:0030554, GO:0035639, GO:0097159, GO:1901363, GO:0043167, GO:0036094, GO:0032553, GO:0032559, GO:0001883, GO:0032549, GO:0032555, GO:0017076, GO:0000166, GO:0032550, GO:1901265, GO:0001882
GO:0044444 [CC]	cytoplasmic part	probable	GO:0005737, GO:0044464, GO:0005623, GO:0005622, GO:0005575, GO:0044424
GO:0044459 [CC]	plasma membrane part	probable	GO:0016020, GO:0044464, GO:0005623, GO:0005575, GO:0071944, GO:0005886, GO:0044425

Prediction of Enzyme Commission Number

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 2IW3, chain A
Confidence level:very confident
Coverage over the Query: 1-192,205-222,312-409,420-558
View the alignment between query and template
View the model in PyMOL

Template: 3BK7, chain A
Confidence level:very confident
Coverage over the Query: 1-209,262-266,311-406,419-564
View the alignment between query and template
View the model in PyMOL