Psyllid ID: psy7366

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560------
Protein Sequence
MGLTTTPKRVVTLLLTTQKVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKSMALPVSGNDLGRGDPVRSELSRALNDGSGSGIRNSARPEVSGFYNENIDGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNGTRLVAVNIWAWRIIGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNLHPVPVSLEEDDVRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS
Secondary Structure (PSIPRED)
cccccccHHHHcccccccccccccHHHHHcccccccccccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHHHHHHHcccEEEEEcccHHHHHHHcccEEEEEccEEEEEccHHHHHHccccccEEcccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHcccccccEEEEEccEEEEccccccccccccEEEEEccccEEEccccccccHHHHHHHHHcccccccEEEEEEcccccccHHHHHcccccccccccccccccHHHHHHHHHHccccccccHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHccccEEEEccccccccHHHHHHHHHHHHHHHHcccEEEEccccHHHHHHHHccEEEEEccEEEEEcccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHccccccccccccccccHHHHHHHccccccccHHHHHccHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHcccccccccHHHHHHHHHHHHHccccEEEEccccccccHHHHHHHHHHHHHHHHcccEEEEEcccHHHHHHHHcHEEEEEccEEEEEccHHHHHHHccccEEEEEEcccccccHHHHHHHccccccccccccccHHHccHHHccccHHHHHHHHHHHHHccHHHHHHccccHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHccccccccEEEEEccEEEEccccccEEEEccEEEEEccccEEEEEccccccHcHHHHHHcccccccccEEEEEcccHHHcHHHHHHHcccccccHHHHHHccHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHcccccccccHHHHHHHHHHHHHccccEEEEccccccccHHHHHHHHHHHHHHHHcccEEEEEcccHHHHHHHHcHEEEEEccEEEEEccHHHHcc
Coil and Loop (DISEMBL)
MGLTTTPKRVVTLLLTtqkvpgsnptidknlsyigycpqfdalndrltprehlEFYSRVRNVPSVLLNTIVNESLNKFAlghysdrevrtlsggnkRKLSTAIAllgnpplifldeptsgmdpgaRRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVngqftclgsathlksksmalpvsgndlgrgdpvRSELSRALndgsgsgirnsarpevsgfynenidgknltcmACHGALYSAINLSIEYKVfsrcftrsngtrlVAVNIWAWRIIGKNLTCMACHGALYSAINLSIEYKVfsrcftrsnlhpvpvsleeddvrKERErvehgadsgdVLVVKRLFKIYAnskgtkpavnqisfgvgrgecfgllglngagkttTFKMLTgaikptsgnayvmnhsiRDSMDLVRSYIgycpqfdalndrltprehlEFYSRVRNVPSVLLNTIVNESLNKFAlghysdrevrtlsggnkRKLSTAIAllgnpplifldeptsgmdpgaRRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVngqftclgsathlks
Flexible Loop (DISEMBL)
MGLTTTPKRVVTLLlttqkvpgsnptidknlsYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKSMALPVSGNDLGRGDPVRSELSRalndgsgsgirnsarpevsGFYNENIDGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNGTRLVAVNIWAWRIIGKNLTCMACHGALYSAINLSIEYKVFSRCFTrsnlhpvpvsleeddvrkerervehgadsgdvlvVKRLFKIyanskgtkpavNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS
Low Complexity Region (SEG)
MGLTTTPKRVVTLLLTTQKVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKSMALPVSGNDLGRGDPVRSELSRALNDGSGSGIRNSARPEVSGFYNENIDGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNGTRLVAVNIWAWRIIGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNLHPVPVSLeeddvrkererveHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS
Disordered region (IsUnstruct)
*********VVTLLLTTQKVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATH**********************************************GFYNENIDGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNGTRLVAVNIWAWRIIGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNLHPVP*********************GDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS******
Disordered Region (DISOPRED)
MGLTTTPKRVVTLLLTTQKVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKSMALPVSGNDLGRGDPVRSELSRALNDGSGSGIRNSARPEVSGFYNENIDGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNGTRLVAVNIWAWRIIGKNLTCMACHGALYSAINLSIEYKVFSRCFT***************VRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL**
Disordered Region (DISEMBL)
MGLTTTPKRVVTLLLTTQKVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKSMALPVSGNDLGRGDPVRSELSRALNDGSGSGIRNSARPEVSGFYNENIDGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNGTRLVAVNIWAWRIIGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNLHPVPVSLEEDDVRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS
Disordered Region (DISPRO)
***TTTPKRVVTLLLTTQKVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKSMALPVSGNDLGRGDPVRSELSRALNDGSGSGIRNSARPEVSGFYNENIDGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNGTRLVAVNIWAWRIIGKNLTCMACHGALYSAINLSIEYKVFSRCF***********LEEDDVRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSAT*L*S
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGLTTTPKRVVTLLLTTQKVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKSMALPVSGNDLGRGDPVRSELSRALNDGSGSGIRNSARPEVSGFYNENIDGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNGTRLVAVNIWAWRIIGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNLHPVPVSLEEDDVRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	566	2.2.26 [Sep-21-2011]
O35600	2310	Retinal-specific ATP-bind	yes	N/A	0.514	0.125	0.533	8e-83
P41233	2261	ATP-binding cassette sub-	no	N/A	0.510	0.127	0.503	4e-82
O95477	2261	ATP-binding cassette sub-	yes	N/A	0.510	0.127	0.5	1e-81
Q7TNJ2	2170	ATP-binding cassette sub-	no	N/A	0.508	0.132	0.518	1e-79
Q91V24	2159	ATP-binding cassette sub-	no	N/A	0.507	0.132	0.510	1e-78
P78363	2273	Retinal-specific ATP-bind	no	N/A	0.519	0.129	0.501	4e-78
Q8IZY2	2146	ATP-binding cassette sub-	no	N/A	0.505	0.133	0.491	4e-76
P41234	2434	ATP-binding cassette sub-	no	N/A	0.508	0.118	0.505	2e-74
Q9BZC7	2435	ATP-binding cassette sub-	no	N/A	0.508	0.118	0.501	9e-73
Q8R420	1704	ATP-binding cassette sub-	no	N/A	0.519	0.172	0.482	2e-72

>sp|O35600|ABCA4_MOUSE Retinal-specific ATP-binding cassette transporter OS=Mus musculus GN=Abca4 PE=2 SV=1

 Score =  308 bits (789), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 159/298 (53%), Positives = 197/298 (66%), Gaps = 7/298 (2%)

Query: 270  AVNIWAWRIIGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNLHPV--PVSLEEDDVR 327
            + N + W +IGKNL  MA  G +Y  + L I++  F    TR    P   PV  E+DDV 
Sbjct: 1865 SANPFQWDLIGKNLVAMAIEGVVYFLLTLLIQHHFF---LTRWIAEPAREPVFDEDDDVA 1921

Query: 328  KERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTT 387
            +ER+RV  G +  D+L +  L K+Y+ S  + PAV+++  GV  GECFGLLG+NGAGKTT
Sbjct: 1922 EERQRVMSGGNKTDILKLNELTKVYSGS--SSPAVDRLCVGVRPGECFGLLGVNGAGKTT 1979

Query: 388  TFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVR 447
            TFKMLTG    TSG+A V   SI  S+  V   +GYCPQFDA++D LT REHL  Y+R+R
Sbjct: 1980 TFKMLTGDTTVTSGDATVAGKSILTSISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLR 2039

Query: 448  NVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSG 507
             VPS  +  + N  +    L  Y+DR   T SGGNKRKLSTAIAL G PPL+ LDEPT+G
Sbjct: 2040 GVPSKEIEKVANWGIQSLGLSLYADRLAGTYSGGNKRKLSTAIALTGCPPLLLLDEPTTG 2099

Query: 508  MDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 565
            MDP ARR LW  I   + EGR V+LTSH+MEECEALCT+L IMV G F CLG+  HLK
Sbjct: 2100 MDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGTFQCLGTIQHLK 2157

In the visual cycle, acts as an inward-directed retinoid flipase, retinoid substrates imported by ABCA4 from the extracellular or intradiscal (rod) membrane surfaces to the cytoplasmic membrane surface are all-trans-retinaldehyde (ATR) and N-retinyl-phosphatidyl-ethanolamine (NR-PE). Once transported to the cytoplasmic surface, ATR is reduced to vitamin A by trans-retinol dehydrogenase (tRDH) and then transferred to the retinal pigment epithelium (RPE) where it is converted to 11-cis-retinal. May play a role in photoresponse, removing ATR/NR-PE from the extracellular photoreceptor surfaces during bleach recovery.
Mus musculus (taxid: 10090)

>sp|P41233|ABCA1_MOUSE ATP-binding cassette sub-family A member 1 OS=Mus musculus GN=Abca1 PE=1 SV=4

 Score =  306 bits (783), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 147/292 (50%), Positives = 201/292 (68%), Gaps = 3/292 (1%)

Query: 275  AWRIIGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNLHPVPVSLEEDDVRKERERVE 334
            +W ++G+NL  MA  G ++  I + I+Y+ F R        P P++ E++DVR+ER+R+ 
Sbjct: 1845 SWDLVGRNLFAMAVEGVVFFLITVLIQYRFFIRPRPVKAKLP-PLNDEDEDVRRERQRIL 1903

Query: 335  HGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 394
             G    D+L +K L KIY   +  KPAV++I  G+  GECFGLLG+NGAGK+TTFKMLTG
Sbjct: 1904 DGGGQNDILEIKELTKIYRRKR--KPAVDRICIGIPPGECFGLLGVNGAGKSTTFKMLTG 1961

Query: 395  AIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLL 454
                T G+A++  +SI  ++  V   +GYCPQFDA+ + LT REH+EF++ +R VP   +
Sbjct: 1962 DTPVTRGDAFLNKNSILSNIHEVHQNMGYCPQFDAITELLTGREHVEFFALLRGVPEKEV 2021

Query: 455  NTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARR 514
              +   ++ K  L  Y ++     SGGNKRKLSTA+AL+G PP++FLDEPT+GMDP ARR
Sbjct: 2022 GKVGEWAIRKLGLVKYGEKYASNYSGGNKRKLSTAMALIGGPPVVFLDEPTTGMDPKARR 2081

Query: 515  FLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
            FLW C    V EGR V+LTSH+MEECEALCT++ IMVNG+F CLGS  HLK+
Sbjct: 2082 FLWNCALSIVKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKN 2133

cAMP-dependent and sulfonylurea-sensitive anion transporter. Key gatekeeper influencing intracellular cholesterol transport.

Mus musculus (taxid: 10090)

>sp|O95477|ABCA1_HUMAN ATP-binding cassette sub-family A member 1 OS=Homo sapiens GN=ABCA1 PE=1 SV=3

 Score =  304 bits (778), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 146/292 (50%), Positives = 201/292 (68%), Gaps = 3/292 (1%)

Query: 275  AWRIIGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNLHPVPVSLEEDDVRKERERVE 334
            +W ++G+NL  MA  G ++  I + I+Y+ F R     N    P++ E++DVR+ER+R+ 
Sbjct: 1845 SWDLVGRNLFAMAVEGVVFFLITVLIQYRFFIRP-RPVNAKLSPLNDEDEDVRRERQRIL 1903

Query: 335  HGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 394
             G    D+L +K L KIY   +  KPAV++I  G+  GECFGLLG+NGAGK++TFKMLTG
Sbjct: 1904 DGGGQNDILEIKELTKIYRRKR--KPAVDRICVGIPPGECFGLLGVNGAGKSSTFKMLTG 1961

Query: 395  AIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLL 454
                T G+A++  +SI  ++  V   +GYCPQFDA+ + LT REH+EF++ +R VP   +
Sbjct: 1962 DTTVTRGDAFLNKNSILSNIHEVHQNMGYCPQFDAITELLTGREHVEFFALLRGVPEKEV 2021

Query: 455  NTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARR 514
              +   ++ K  L  Y ++     SGGNKRKLSTA+AL+G PP++FLDEPT+GMDP ARR
Sbjct: 2022 GKVGEWAIRKLGLVKYGEKYAGNYSGGNKRKLSTAMALIGGPPVVFLDEPTTGMDPKARR 2081

Query: 515  FLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
            FLW C    V EGR V+LTSH+MEECEALCT++ IMVNG+F CLGS  HLK+
Sbjct: 2082 FLWNCALSVVKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKN 2133

cAMP-dependent and sulfonylurea-sensitive anion transporter. Key gatekeeper influencing intracellular cholesterol transport.

Homo sapiens (taxid: 9606)

>sp|Q7TNJ2|ABCA7_RAT ATP-binding cassette sub-family A member 7 OS=Rattus norvegicus GN=Abca7 PE=1 SV=1

 Score =  297 bits (761), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 151/291 (51%), Positives = 196/291 (67%), Gaps = 3/291 (1%)

Query: 276  WRIIGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNLHPVPVSLEEDDVRKERERVEH 335
            W IIGKNL  M   G L+  I L ++++       +S L P P+  E++DV +ERERV  
Sbjct: 1752 WDIIGKNLLAMVAQGPLFLLITLLLQHRNRLLPQPKSRLPP-PLGEEDEDVVRERERVTK 1810

Query: 336  GADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA 395
            GA  GDVLV++ L K+Y   +   PAV+ +  G+  GECFGLLG+NGAGKT+TF+M+TG 
Sbjct: 1811 GATQGDVLVLRDLTKVYRGQR--SPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGD 1868

Query: 396  IKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLN 455
              P+SG A +  H++          +GYCPQ DA+ D LT REHLE ++R+R VP   + 
Sbjct: 1869 TLPSSGEAVLAGHNVAQEPSAAHRSMGYCPQSDAIFDLLTGREHLELFARLRGVPEAQVA 1928

Query: 456  TIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRF 515
                  L +  L  Y+DR   T SGGNKRKL+TA+AL+G+P ++FLDEPT+GMDP ARRF
Sbjct: 1929 QTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSARRF 1988

Query: 516  LWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
            LW  +   V EGR V+LTSH+MEECEALCT+L IMVNG+F CLGSA HLKS
Sbjct: 1989 LWNNLLSVVREGRSVVLTSHSMEECEALCTRLAIMVNGRFRCLGSAQHLKS 2039

Plays a role in phagocytosis by macrophages of apoptotic cells. Binds APOA1 and may function in apolipoprotein-mediated phospholipid efflux from cells. May also mediate cholesterol efflux. May regulate cellular ceramide homeostasis during keratinocytes differentiation.

Rattus norvegicus (taxid: 10116)

>sp|Q91V24|ABCA7_MOUSE ATP-binding cassette sub-family A member 7 OS=Mus musculus GN=Abca7 PE=1 SV=1

 Score =  294 bits (753), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 148/290 (51%), Positives = 196/290 (67%), Gaps = 3/290 (1%)

Query: 276  WRIIGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNLHPVPVSLEEDDVRKERERVEH 335
            W IIGKNL  M   G L+  I L ++++      ++  L P P+  E++DV +ERERV  
Sbjct: 1741 WDIIGKNLLAMMAQGPLFLLITLLLQHRNRLLPQSKPRLLP-PLGEEDEDVAQERERVTK 1799

Query: 336  GADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA 395
            GA  GDVLV++ L K+Y   +   PAV+++  G+  GECFGLLG+NGAGKT+TF+M+TG 
Sbjct: 1800 GATQGDVLVLRDLTKVYRGQR--NPAVDRLCLGIPPGECFGLLGVNGAGKTSTFRMVTGD 1857

Query: 396  IKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLN 455
              P+SG A +  H++          +GYCPQ DA+ D LT REHLE ++R+R VP   + 
Sbjct: 1858 TLPSSGEAVLAGHNVAQERSAAHRSMGYCPQSDAIFDLLTGREHLELFARLRGVPEAQVA 1917

Query: 456  TIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRF 515
                  L +  L  Y+DR   T SGGNKRKL+TA+AL+G+P ++FLDEPT+GMDP ARRF
Sbjct: 1918 QTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSARRF 1977

Query: 516  LWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 565
            LW  +   V EGR V+LTSH+MEECEALCT+L IMVNG+F CLGS+ HLK
Sbjct: 1978 LWNSLLSVVREGRSVVLTSHSMEECEALCTRLAIMVNGRFRCLGSSQHLK 2027

Plays a role in phagocytosis by macrophages of apoptotic cells. Binds APOA1 and may function in apolipoprotein-mediated phospholipid efflux from cells. May also mediate cholesterol efflux. May regulate cellular ceramide homeostasis during keratinocytes differentiation.

Mus musculus (taxid: 10090)

>sp|P78363|ABCA4_HUMAN Retinal-specific ATP-binding cassette transporter OS=Homo sapiens GN=ABCA4 PE=1 SV=3

 Score =  292 bits (748), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 149/297 (50%), Positives = 194/297 (65%), Gaps = 3/297 (1%)

Query: 270  AVNIWAWRIIGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNLHPVPVSLEEDDVRKE 329
            + N + W +IGKNL  M   G +Y  + L ++   F   +        P+  E+DDV +E
Sbjct: 1866 SANPFHWDLIGKNLFAMVVEGVVYFLLTLLVQRHFFLSQWIAEPTKE-PIVDEDDDVAEE 1924

Query: 330  RERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTF 389
            R+R+  G +  D+L +  L KIY  +  + PAV+++  GV  GECFGLLG+NGAGKTTTF
Sbjct: 1925 RQRIITGGNKTDILRLHELTKIYPGT--SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTF 1982

Query: 390  KMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNV 449
            KMLTG    TSG+A V   SI  ++  V   +GYCPQFDA+++ LT REHL  Y+R+R V
Sbjct: 1983 KMLTGDTTVTSGDATVAGKSILTNISEVHQNMGYCPQFDAIDELLTGREHLYLYARLRGV 2042

Query: 450  PSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 509
            P+  +  + N S+    L  Y+D    T SGGNKRKLSTAIAL+G PPL+ LDEPT+GMD
Sbjct: 2043 PAEEIEKVANWSIKSLGLTVYADCLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMD 2102

Query: 510  PGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
            P ARR LW  I   + EGR V+LTSH+MEECEALCT+L IMV G F C+G+  HLKS
Sbjct: 2103 PQARRMLWNVIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFRCMGTIQHLKS 2159

In the visual cycle, acts as an inward-directed retinoid flipase, retinoid substrates imported by ABCA4 from the extracellular or intradiscal (rod) membrane surfaces to the cytoplasmic membrane surface are all-trans-retinaldehyde (ATR) and N-retinyl-phosphatidyl-ethanolamine (NR-PE). Once transported to the cytoplasmic surface, ATR is reduced to vitamin A by trans-retinol dehydrogenase (tRDH) and then transferred to the retinal pigment epithelium (RPE) where it is converted to 11-cis-retinal. May play a role in photoresponse, removing ATR/NR-PE from the extracellular photoreceptor surfaces during bleach recovery.

Homo sapiens (taxid: 9606)

>sp|Q8IZY2|ABCA7_HUMAN ATP-binding cassette sub-family A member 7 OS=Homo sapiens GN=ABCA7 PE=1 SV=3

 Score =  286 bits (731), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 143/291 (49%), Positives = 192/291 (65%), Gaps = 5/291 (1%)

Query: 276  WRIIGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNLHPVPVSLEED-DVRKERERVE 334
            W ++GKNL  M   G L+    L ++++  S+   +  +  +P+  EED DV +ERERV 
Sbjct: 1727 WEVVGKNLLAMVIQGPLFLLFTLLLQHR--SQLLPQPRVRSLPLLGEEDEDVARERERVV 1784

Query: 335  HGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 394
             GA  GDVLV++ L K+Y   +   PAV+++  G+  GECFGLLG+NGAGKT+TF+M+TG
Sbjct: 1785 QGATQGDVLVLRNLTKVYRGQR--MPAVDRLCLGIPPGECFGLLGVNGAGKTSTFRMVTG 1842

Query: 395  AIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLL 454
                + G A +  HS+          +GYCPQ DA+ + LT REHLE  +R+R VP   +
Sbjct: 1843 DTLASRGEAVLAGHSVAREPSAAHLSMGYCPQSDAIFELLTGREHLELLARLRGVPEAQV 1902

Query: 455  NTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARR 514
                   L +  L  Y+DR   T SGGNKRKL+TA+AL+G+P ++FLDEPT+GMDP ARR
Sbjct: 1903 AQTAGSGLARLGLSWYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSARR 1962

Query: 515  FLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 565
            FLW  +   V EGR V+LTSH+MEECEALC++L IMVNG+F CLGS  HLK
Sbjct: 1963 FLWNSLLAVVREGRSVMLTSHSMEECEALCSRLAIMVNGRFRCLGSPQHLK 2013

Plays a role in phagocytosis by macrophages of apoptotic cells. Binds APOA1 and may function in apolipoprotein-mediated phospholipid efflux from cells. May also mediate cholesterol efflux. May regulate cellular ceramide homeostasis during keratinocytes differentiation.

Homo sapiens (taxid: 9606)

>sp|P41234|ABCA2_MOUSE ATP-binding cassette sub-family A member 2 OS=Mus musculus GN=Abca2 PE=1 SV=4

 Score =  280 bits (716), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 148/293 (50%), Positives = 189/293 (64%), Gaps = 5/293 (1%)

Query: 276  WRIIGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNLHPVPVSLEED-DVRKERERVE 334
            W I+ + L  M   G +   + +  +Y  F R   R  +   PV  E+D DV  ER+RV 
Sbjct: 1986 WDIVTRGLVAMTVEGFVGFFLTIMCQYN-FLRQPQRLPVSTKPV--EDDVDVASERQRVL 2042

Query: 335  HGADSGDVLVVKRLFKIYANSK-GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT 393
             G    D++ ++ L K+Y + K G   AV+++  GV  GECFGLLG+NGAGKT+TFKMLT
Sbjct: 2043 RGDADNDMVKIENLTKVYKSRKIGRILAVDRLCLGVRPGECFGLLGVNGAGKTSTFKMLT 2102

Query: 394  GAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVL 453
            G    T G A+V  HS+   +  V+  +GYCPQFDAL D LT REHL+ Y+R+R +P   
Sbjct: 2103 GDESTTGGEAFVNGHSVLKDLLQVQQSLGYCPQFDALFDELTAREHLQLYTRLRGIPWKD 2162

Query: 454  LNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR 513
               +V  +L K  L  Y+D+   T SGGNKRKLSTAIAL+G P  IFLDEPT+GMDP AR
Sbjct: 2163 EAQVVKWALEKLELTKYADKPAGTYSGGNKRKLSTAIALIGYPAFIFLDEPTTGMDPKAR 2222

Query: 514  RFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
            RFLW  I   +  GR V+LTSH+MEECEALCT+L IMVNG+  CLGS  HLK+
Sbjct: 2223 RFLWNLILDLIKTGRSVVLTSHSMEECEALCTRLAIMVNGRLRCLGSIQHLKN 2275

Probable transporter, its natural substrate has not been found yet. May have a role in macrophage lipid metabolism and neural development.

Mus musculus (taxid: 10090)

>sp|Q9BZC7|ABCA2_HUMAN ATP-binding cassette sub-family A member 2 OS=Homo sapiens GN=ABCA2 PE=1 SV=3

 Score =  275 bits (702), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 147/293 (50%), Positives = 188/293 (64%), Gaps = 5/293 (1%)

Query: 276  WRIIGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNLHPVPVSLEED-DVRKERERVE 334
            W I+ + L  MA  G +   + +  +Y  F R   R  +   PV  E+D DV  ER+RV 
Sbjct: 1985 WDIVTRGLVAMAVEGVVGFLLTIMCQYN-FLRRPQRMPVSTKPV--EDDVDVASERQRVL 2041

Query: 335  HGADSGDVLVVKRLFKIYANSK-GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT 393
             G    D++ ++ L K+Y + K G   AV+++  GV  GECFGLLG+NGAGKT+TFKMLT
Sbjct: 2042 RGDADNDMVKIENLTKVYKSRKIGRILAVDRLCLGVRPGECFGLLGVNGAGKTSTFKMLT 2101

Query: 394  GAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVL 453
            G    T G A+V  HS+   +  V+  +GYCPQ DAL D LT REHL+ Y+R+R +    
Sbjct: 2102 GDESTTGGEAFVNGHSVLKELLQVQQSLGYCPQCDALFDELTAREHLQLYTRLRGISWKD 2161

Query: 454  LNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR 513
               +V  +L K  L  Y+D+   T SGGNKRKLSTAIAL+G P  IFLDEPT+GMDP AR
Sbjct: 2162 EARVVKWALEKLELTKYADKPAGTYSGGNKRKLSTAIALIGYPAFIFLDEPTTGMDPKAR 2221

Query: 514  RFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
            RFLW  I   +  GR V+LTSH+MEECEALCT+L IMVNG+  CLGS  HLK+
Sbjct: 2222 RFLWNLILDLIKTGRSVVLTSHSMEECEALCTRLAIMVNGRLRCLGSIQHLKN 2274

Probable transporter, its natural substrate has not been found yet. May have a role in macrophage lipid metabolism and neural development.

Homo sapiens (taxid: 9606)

>sp|Q8R420|ABCA3_MOUSE ATP-binding cassette sub-family A member 3 OS=Mus musculus GN=Abca3 PE=2 SV=3

 Score =  274 bits (700), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 150/311 (48%), Positives = 196/311 (63%), Gaps = 17/311 (5%)

Query: 272  NIWAWRI--IGKNLTCMACHGALYSAINLSIEYKV----------FSRCFTRSNLHPVPV 319
            + +AW    +GK +T MA  G +Y  +   IE  +          F R +T + L     
Sbjct: 1294 SFYAWSTPGVGKFVTSMAASGGIYLTLLFLIETNLLWRLRTFICAFRRRWTLAELQNRTS 1353

Query: 320  SLEED-DVRKERERV-EHGADS--GDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECF 375
             L ED DV +ER R+     DS     L++  L K+Y + +    AV++IS  V +GECF
Sbjct: 1354 VLPEDQDVAEERSRILVPSLDSMLDTPLIINELSKVY-DQRAPLLAVDRISLAVQKGECF 1412

Query: 376  GLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLT 435
            GLLG NGAGKTTTFKMLTG    TSG+A+V  +SI   +  VR  +GYCPQFDAL D +T
Sbjct: 1413 GLLGFNGAGKTTTFKMLTGEETITSGDAFVGGYSISSDIGKVRQRMGYCPQFDALLDHMT 1472

Query: 436  PREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGN 495
             RE L  Y+R+R +P  L+N  V  +L    L  ++++ V+T SGGNKRKLST IAL+G 
Sbjct: 1473 GREMLVMYARLRGIPERLINACVENTLRGLLLEPHANKLVKTYSGGNKRKLSTGIALIGE 1532

Query: 496  PPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQF 555
            P +IFLDEP++GMDP ARR LW  + RA   G+ +++TSH+MEECEALCT+L IMV GQF
Sbjct: 1533 PAVIFLDEPSTGMDPVARRLLWDTVARARESGKAIVITSHSMEECEALCTRLAIMVQGQF 1592

Query: 556  TCLGSATHLKS 566
             CLGS  HLKS
Sbjct: 1593 KCLGSPQHLKS 1603

Plays an important role in the formation of pulmonary surfactant, probably by transporting lipids such as cholesterol.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	566
326671570	2323	PREDICTED: ATP-binding cassette sub-fami	0.561	0.136	0.494	3e-88
390344366	2717	PREDICTED: ATP-binding cassette sub-fami	0.531	0.110	0.529	1e-86
443734953	2255	hypothetical protein CAPTEDRAFT_226736 [	0.514	0.129	0.529	9e-86
427794409	797	Putative lipid exporter abca1, partial [	0.507	0.360	0.547	8e-85
427784385	2338	Putative lipid exporter abca1 [Rhipiceph	0.507	0.122	0.547	1e-84
410921788	2372	PREDICTED: ATP-binding cassette sub-fami	0.508	0.121	0.522	1e-84
432855003	2368	PREDICTED: ATP-binding cassette sub-fami	0.524	0.125	0.508	3e-84
47211165	1910	unnamed protein product [Tetraodon nigro	0.508	0.150	0.522	2e-83
410918313	2269	PREDICTED: ATP-binding cassette sub-fami	0.510	0.127	0.513	6e-83
296489273	2281	TPA: ATP-binding cassette, sub-family A	0.512	0.127	0.528	2e-82

>gi|326671570|ref|XP_001920862.3| PREDICTED: ATP-binding cassette sub-family A member 1 [Danio rerio]

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 168/340 (49%), Positives = 220/340 (64%), Gaps = 22/340 (6%)

Query: 231  GKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNGTRLVAVNIWAWRIIGKNLTCMACHG 290
            G+ L  MA + A+  A         F R  T+ N   L      +W  +GKNL  MA  G
Sbjct: 1797 GRGLIDMAKNQAMADA---------FQRLGTKQNLDPL------SWDFVGKNLFAMAMEG 1841

Query: 291  ALYSAINLSIEYKVFSR----CFTRSNLHPVPVSLEEDDVRKERERVEHGADSGDVLVVK 346
             ++    + ++YK F      C     + P P+ +E++DV +ERERV++G   GD+L++ 
Sbjct: 1842 IVFFLFTVLLQYKFFVNFRWVCMPECFVLP-PLGMEDEDVARERERVKNGRALGDILILS 1900

Query: 347  RLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM 406
             L K+Y    G KPAVN++  G+ RGECFGLLG+NGAGKT+TF+MLTG  + T G A++ 
Sbjct: 1901 DLSKVY--KAGRKPAVNRLCLGIPRGECFGLLGVNGAGKTSTFRMLTGDTRITYGEAFLS 1958

Query: 407  NHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFA 466
            N S+   M+ V   +GYCPQFDA+ D LT REHLEFY+R+R VP   +  +    + K  
Sbjct: 1959 NQSVLTEMEKVHQLMGYCPQFDAIIDLLTGREHLEFYARLRGVPESYVEKVAQWGVQKLG 2018

Query: 467  LGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE 526
            L  Y+DRE    SGGNKRKLSTAIAL+G  P+IFLDEPT+GMDP A+RFLW CI   V E
Sbjct: 2019 LSQYADREAGGYSGGNKRKLSTAIALIGAAPVIFLDEPTTGMDPKAKRFLWNCILSVVKE 2078

Query: 527  GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
            GR V+LTSH+MEECEALCT++ IMVNG+F CLGS  HLK+
Sbjct: 2079 GRSVVLTSHSMEECEALCTRMAIMVNGRFQCLGSVQHLKN 2118

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|390344366|ref|XP_003726106.1| PREDICTED: ATP-binding cassette sub-family A member 1-like [Strongylocentrotus purpuratus]

 Score =  327 bits (837), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 162/306 (52%), Positives = 210/306 (68%), Gaps = 5/306 (1%)

Query: 263  SNGTRLVAVNIWAWRIIGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNLHPVPVSLE 322
            S  T  VA +   W  +GKNL  +   G ++  + L IEY+ F    T   + P P   E
Sbjct: 2170 SEYTDYVAPDPLKWAQLGKNLFALFIEGFVFFILTLLIEYRFF---ITPRQVTPTPTLSE 2226

Query: 323  EDD--VRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGL 380
            +DD  V++ER+RV  G    DV+ ++ L K+Y+ S+G   AV+++  G+ +GECFGLLG+
Sbjct: 2227 QDDDDVQRERQRVLTGRAMNDVIRIENLSKVYSTSRGPMTAVDKMCVGIPKGECFGLLGV 2286

Query: 381  NGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHL 440
            NGAGKTTTFKMLTG    TSG A++ ++SI D+M  V   +GYCPQFDAL++ +T +EHL
Sbjct: 2287 NGAGKTTTFKMLTGDTSVTSGTAHITSYSILDAMQDVNRSMGYCPQFDALDELMTGQEHL 2346

Query: 441  EFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIF 500
            EFY+RVR V    +  + +  + K  L  Y DR   T SGGNKRKLSTAIAL+GNPP+IF
Sbjct: 2347 EFYARVRGVMEEEVPKVADWGIRKLGLTEYRDRSAGTYSGGNKRKLSTAIALIGNPPVIF 2406

Query: 501  LDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 560
            LDEPT+GMDP +RRFLW CI   V EGR V+LTSH+MEECEALCT+L IMVNG+F CLGS
Sbjct: 2407 LDEPTTGMDPKSRRFLWNCITSIVKEGRSVVLTSHSMEECEALCTRLAIMVNGKFKCLGS 2466

Query: 561  ATHLKS 566
              HLK+
Sbjct: 2467 TQHLKN 2472

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|443734953|gb|ELU18808.1| hypothetical protein CAPTEDRAFT_226736 [Capitella teleta]

 Score =  324 bits (830), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 161/304 (52%), Positives = 215/304 (70%), Gaps = 13/304 (4%)

Query: 274  WAWRIIGKNLTCMACHGALYSAINLSIEYKVF---SRCFTRSNLHPVPVSLEEDD----- 325
            + W I+G+NL  ++  G  +  +N+ IEYK +    +C +      +PV++EE D     
Sbjct: 1787 FTWDIVGRNLLSLSILGVFFFFLNICIEYKFWIYSMKCISPCK-EQIPVNVEETDEEDID 1845

Query: 326  VRKERERVEHGADSGDVLVVKRLFKIYAN---SKGTKPAVNQISFGVGRGECFGLLGLNG 382
            V +ERERV  GA SGD+L ++ L K+Y +   +KG + AV+++S GV  GECFGLLG+NG
Sbjct: 1846 VVRERERVTLGAASGDILTLEGLTKVYKSPLKNKGHR-AVDRLSVGVHSGECFGLLGVNG 1904

Query: 383  AGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEF 442
            AGKTTTFKMLTG IK T G+A++  HSIR  M  +   +GYCPQFDAL   LTPREHL+ 
Sbjct: 1905 AGKTTTFKMLTGNIKSTDGDAHLAGHSIRSEMTAIHQNLGYCPQFDALCPLLTPREHLQM 1964

Query: 443  YSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLD 502
            Y+R+R VP+  ++T+    + K  L +++ +    LSGGNKRKLSTAIAL+GNPP+IFLD
Sbjct: 1965 YARLRGVPAEDVDTVAEWGIEKLGLVNHAAKLSHQLSGGNKRKLSTAIALVGNPPVIFLD 2024

Query: 503  EPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSAT 562
            EPT+GMDP ARRFLW CI   + +GR V+LTSH+MEECEALC ++ IMVNGQF C+GS  
Sbjct: 2025 EPTTGMDPKARRFLWNCISGIIKDGRSVVLTSHSMEECEALCNRIVIMVNGQFKCIGSIQ 2084

Query: 563  HLKS 566
            HLK+
Sbjct: 2085 HLKN 2088

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|427794409|gb|JAA62656.1| Putative lipid exporter abca1, partial [Rhipicephalus pulchellus]

 Score =  321 bits (822), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 160/292 (54%), Positives = 196/292 (67%), Gaps = 5/292 (1%)

Query: 276 WRIIGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNLHPV-PVSLEEDDVRKERERVE 334
           W  +G NL  +A  G +Y    L ++Y+ F R   R    P  P  L + DV +ERERV 
Sbjct: 303 WDFLGLNLISLAVQGLVYFIFTLLLQYRFFVR--KRQQTVPFDPKELADQDVTQERERVL 360

Query: 335 HGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 394
            G     +L V  L K+Y    G  PAVN +  GV  GECFGLLG+NGAGKTTTFKMLTG
Sbjct: 361 AGQADDSILQVVNLTKVY--RAGQHPAVNHLCVGVRAGECFGLLGVNGAGKTTTFKMLTG 418

Query: 395 AIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLL 454
             + T GNA++  +SIR  +DL R  IGYCPQFDAL+  LT  EHLEFY+R+R +P   +
Sbjct: 419 NTEVTEGNAFISGYSIRTQIDLARQNIGYCPQFDALDPLLTGWEHLEFYARLRGIPEKYV 478

Query: 455 NTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARR 514
             + +  + K  L  Y+ R   T SGGNKRKL+TAIAL+G+PPL+FLDEPT+GMDP ARR
Sbjct: 479 QKVADWGIRKLGLHRYAHRCAGTYSGGNKRKLNTAIALVGDPPLVFLDEPTTGMDPKARR 538

Query: 515 FLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
           FLW CI   V +GR VILTSH+MEECEALC++L IMVNGQF CLGS  HLK+
Sbjct: 539 FLWDCILDVVRDGRSVILTSHSMEECEALCSRLAIMVNGQFRCLGSIQHLKN 590

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427784385|gb|JAA57644.1| Putative lipid exporter abca1 [Rhipicephalus pulchellus]

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 160/292 (54%), Positives = 196/292 (67%), Gaps = 5/292 (1%)

Query: 276  WRIIGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNLHPV-PVSLEEDDVRKERERVE 334
            W  +G NL  +A  G +Y    L ++Y+ F R   R    P  P  L + DV +ERERV 
Sbjct: 1890 WDFLGLNLISLAVQGLVYFIFTLLLQYRFFVR--KRQQTVPFDPKELADQDVTQERERVL 1947

Query: 335  HGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 394
             G     +L V  L K+Y    G  PAVN +  GV  GECFGLLG+NGAGKTTTFKMLTG
Sbjct: 1948 AGQADDSILQVVNLTKVY--RAGQHPAVNHLCVGVRAGECFGLLGVNGAGKTTTFKMLTG 2005

Query: 395  AIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLL 454
              + T GNA++  +SIR  +DL R  IGYCPQFDAL+  LT  EHLEFY+R+R +P   +
Sbjct: 2006 NTEVTEGNAFISGYSIRTQIDLARQNIGYCPQFDALDPLLTGWEHLEFYARLRGIPEKYV 2065

Query: 455  NTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARR 514
              + +  + K  L  Y+ R   T SGGNKRKL+TAIAL+G+PPL+FLDEPT+GMDP ARR
Sbjct: 2066 QKVADWGIRKLGLHRYAHRCAGTYSGGNKRKLNTAIALVGDPPLVFLDEPTTGMDPKARR 2125

Query: 515  FLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
            FLW CI   V +GR VILTSH+MEECEALC++L IMVNGQF CLGS  HLK+
Sbjct: 2126 FLWDCILDVVRDGRSVILTSHSMEECEALCSRLAIMVNGQFRCLGSIQHLKN 2177

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|410921788|ref|XP_003974365.1| PREDICTED: ATP-binding cassette sub-family A member 1-like [Takifugu rubripes]

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 152/291 (52%), Positives = 200/291 (68%), Gaps = 3/291 (1%)

Query: 276  WRIIGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNLHPVPVSLEEDDVRKERERVEH 335
            W  +GKNL  MA  G ++    + ++YK F R +    L P P+  E++DV +ER+RV +
Sbjct: 1848 WDFVGKNLFAMAAEGVIFFIFTILLQYKFFIRPWWVQTLLP-PLGPEDEDVTRERQRVLN 1906

Query: 336  GADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA 395
            G    D+L +  L K+Y    G KPAV+++  G+  GECFGLLG+NGAGKT+TF+MLTG 
Sbjct: 1907 GNAQSDILSMINLSKVY--KMGKKPAVDRLCLGIPCGECFGLLGVNGAGKTSTFRMLTGD 1964

Query: 396  IKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLN 455
               T G A++ +HS+   M+ V   +GYCPQFDA++D LT REHLE Y+R+R VP   + 
Sbjct: 1965 TNVTYGEAFLNHHSVLTEMERVHQLMGYCPQFDAISDLLTGREHLELYARLRGVPEESVT 2024

Query: 456  TIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRF 515
             +    + K  L  Y+DRE    SGGNKRKLSTAI+L+G PP+IFLDEPT+GMDP A+RF
Sbjct: 2025 KVAEWGVKKLGLTQYADREAGGYSGGNKRKLSTAISLIGAPPVIFLDEPTTGMDPKAKRF 2084

Query: 516  LWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
            LW CI     EGR V+LTSH+MEECEALCT++ IMVNG+F CLGS  HLK+
Sbjct: 2085 LWNCILSVTKEGRAVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKN 2135

Source: Takifugu rubripes

Species: Takifugu rubripes

Genus: Takifugu

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|432855003|ref|XP_004068024.1| PREDICTED: ATP-binding cassette sub-family A member 1-like [Oryzias latipes]

 Score =  318 bits (816), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 155/305 (50%), Positives = 203/305 (66%), Gaps = 8/305 (2%)

Query: 265  GTRLVAVNIWAWRIIGKNLTCMACHGALYSAINLSIEYKVF---SRCFTRSNLHPVPVSL 321
            G R V ++ + W  +GKNL CMA  G  Y    + ++YK F      +T   L P+    
Sbjct: 1841 GARPV-LDPFQWDFVGKNLFCMAASGVFYFIFTILLQYKFFIHLKPWWTEPQLPPI--GP 1897

Query: 322  EEDDVRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLN 381
            E++DV +ER RV  G    D+L +  L K+Y    G KPAVN++  G+  GECFGLLG+N
Sbjct: 1898 EDEDVARERARVMSGKFHSDILTMINLSKVY--KAGKKPAVNRLCLGIPPGECFGLLGVN 1955

Query: 382  GAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLE 441
            GAGKT+TF+MLTG    T G A++  HS+   MD V   +GYCPQFDA++D LT REHLE
Sbjct: 1956 GAGKTSTFRMLTGDTPITHGEAFLDRHSVLTEMDRVHQLMGYCPQFDAISDLLTGREHLE 2015

Query: 442  FYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFL 501
             Y+R+R VP   ++ +    + K  L  Y++++    SGGNKRKLSTAI+L+G PP+IFL
Sbjct: 2016 LYARLRGVPEESVSKVAQWGVRKLGLTQYAEQKAGGYSGGNKRKLSTAISLIGAPPVIFL 2075

Query: 502  DEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSA 561
            DEPT+GMDP A+RFLW CI     EG+ V+LTSH+MEECEALCT++ IMVNGQF CLGS 
Sbjct: 2076 DEPTTGMDPKAKRFLWNCIHSVTKEGKAVVLTSHSMEECEALCTRMAIMVNGQFQCLGSV 2135

Query: 562  THLKS 566
             HLK+
Sbjct: 2136 QHLKN 2140

Source: Oryzias latipes

Species: Oryzias latipes

Genus: Oryzias

Family: Adrianichthyidae

Order: Beloniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|47211165|emb|CAF95992.1| unnamed protein product [Tetraodon nigroviridis]

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 153/293 (52%), Positives = 201/293 (68%), Gaps = 5/293 (1%)

Query: 276  WRIIGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNLHPV--PVSLEEDDVRKERERV 333
            W  +GKNL  MA  G ++    + ++YK F + F    + PV  P+  E++DV +ERERV
Sbjct: 1107 WDFVGKNLFAMAAEGVIFFIFTILLQYKFFIQ-FRPWWVQPVLPPLGPEDEDVTRERERV 1165

Query: 334  EHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT 393
             +G    D+L +  L K+Y    G KPAV+++  G+  GECFGLLG+NGAGKT+TF+MLT
Sbjct: 1166 LNGKAHSDILTMINLSKVY--KVGRKPAVDRLCLGIPCGECFGLLGVNGAGKTSTFRMLT 1223

Query: 394  GAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVL 453
            G    T G AY+ +HS+   M+ V   +GYCPQFDA++D LT REHLE Y+R+R VP   
Sbjct: 1224 GDTDVTYGEAYLNHHSVLTEMERVHQLMGYCPQFDAISDLLTGREHLELYARLRGVPEES 1283

Query: 454  LNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR 513
            +  +    + K  L  Y+D+E    SGGNKRKLSTAI+L+G PP+IFLDEPT+GMDP A+
Sbjct: 1284 VAKVAQWGVKKLGLTQYADQEAGGYSGGNKRKLSTAISLIGAPPVIFLDEPTTGMDPKAK 1343

Query: 514  RFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
            RFLW CI     EGR V+LTSH+MEECEALCT++ IMVNG+F CLGS  HLK+
Sbjct: 1344 RFLWNCILSVTKEGRAVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKN 1396

Source: Tetraodon nigroviridis

Species: Tetraodon nigroviridis

Genus: Tetraodon

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|410918313|ref|XP_003972630.1| PREDICTED: ATP-binding cassette sub-family A member 1-like [Takifugu rubripes]

 Score =  314 bits (805), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 150/292 (51%), Positives = 203/292 (69%), Gaps = 3/292 (1%)

Query: 275  AWRIIGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNLHPVPVSLEEDDVRKERERVE 334
            AW ++GKNL  MA  G ++ +I + I+Y  F +  + ++ H  P+  E++DV +ER+R+ 
Sbjct: 1852 AWDMVGKNLFAMAIEGVIFFSITVLIQYHFFFKARSSTS-HLKPIGEEDEDVARERQRIL 1910

Query: 335  HGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 394
             G    D+L +++L KIY   +  KPAV+++  G+ RGECFGLLG+NGAGKT+TFKMLTG
Sbjct: 1911 SGGGQSDILELRQLTKIYKRKQ--KPAVDRLCVGIPRGECFGLLGVNGAGKTSTFKMLTG 1968

Query: 395  AIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLL 454
                T G AY+ + S+   +D V   +GYCPQFDA+ND LT REHLEFY+ +R VP   +
Sbjct: 1969 DSMVTGGEAYLASKSVTKEIDEVHQNMGYCPQFDAINDLLTGREHLEFYAILRGVPEKEV 2028

Query: 455  NTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARR 514
              + +  + K  L  Y D+   + SGGN RKLSTAIAL+G PP++FLDEPT+GMDP ARR
Sbjct: 2029 CEVADWGIRKLGLMKYVDKAAGSYSGGNMRKLSTAIALIGGPPVVFLDEPTTGMDPKARR 2088

Query: 515  FLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
             LW  I   + EGR V+LTSH+MEECEALCT++ IMVNG+F CLGS  HLK+
Sbjct: 2089 ALWNAILSIIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKN 2140

Source: Takifugu rubripes

Species: Takifugu rubripes

Genus: Takifugu

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|296489273|tpg|DAA31386.1| TPA: ATP-binding cassette, sub-family A (ABC1), member 4 [Bos taurus]

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 157/297 (52%), Positives = 202/297 (68%), Gaps = 7/297 (2%)

Query: 272  NIWAWRIIGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNLHPV--PVSLEEDDVRKE 329
            N + W +IGKNL  MA  G +Y  + L I+Y+ F   F+R    P   P++ E+DDV +E
Sbjct: 1866 NPFQWDLIGKNLAAMAVEGVVYFLLTLLIQYQFF---FSRWTTEPAKEPITDEDDDVAEE 1922

Query: 330  RERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTF 389
            R+R+  G +  D+L +  L K+Y+ +  + PAV+++  GV  GECFGLLG+NGAGKTTTF
Sbjct: 1923 RQRIISGGNKTDILRLNELTKVYSGT--SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTF 1980

Query: 390  KMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNV 449
            KMLTG    TSG+A V   SI  ++  V   +GYCPQFDA++D LT REHL  Y+R+R V
Sbjct: 1981 KMLTGDTAVTSGDATVAGKSILTNISDVHQSMGYCPQFDAIDDLLTGREHLYLYARLRGV 2040

Query: 450  PSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 509
            P+  +  + N S+    L  Y+DR   T SGGNKRKLSTAIAL+G PPL+ LDEPT+GMD
Sbjct: 2041 PAEEIERVTNWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMD 2100

Query: 510  PGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
            P ARR LW  I   + EGR V+LTSH+MEECEALCT+L IMV G F CLG+  HLKS
Sbjct: 2101 PQARRMLWNTIMGIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKS 2157

Source: Bos taurus

Species: Bos taurus

Genus: Bos

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	566
RGD|1303134	2170	Abca7 "ATP-binding cassette, s	0.508	0.132	0.491	1.5e-96
UNIPROTKB|Q7TNJ2	2170	Abca7 "ATP-binding cassette su	0.508	0.132	0.491	1.5e-96
ZFIN|ZDB-GENE-030131-9826	2282	abca1b "ATP-binding cassette,	0.505	0.125	0.494	1.1e-95
MGI|MGI:1351646	2159	Abca7 "ATP-binding cassette, s	0.503	0.132	0.486	2.1e-95
ZFIN|ZDB-GENE-031006-12	2268	abca1a "ATP-binding cassette,	0.510	0.127	0.486	2.3e-95
UNIPROTKB|F1MWM0	2281	ABCA4 "Uncharacterized protein	0.512	0.127	0.505	1.6e-94
UNIPROTKB|F1N8D7	2277	ABCA4 "Uncharacterized protein	0.586	0.145	0.460	1.9e-93
ZFIN|ZDB-GENE-050517-1	2503	abca2 "ATP-binding cassette, s	0.512	0.115	0.503	2.7e-93
UNIPROTKB|J9P747	2134	ABCA4 "Uncharacterized protein	0.514	0.136	0.5	3.9e-93
UNIPROTKB|F1P7E4	2268	ABCA4 "Uncharacterized protein	0.514	0.128	0.5	4.9e-93

RGD|1303134 Abca7 "ATP-binding cassette, subfamily A (ABC1), member 7" [Rattus norvegicus (taxid:10116)]

 Score = 711 (255.3 bits), Expect = 1.5e-96, Sum P(3) = 1.5e-96
 Identities = 143/291 (49%), Positives = 185/291 (63%)

Query:   276 WRIIGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNLHPVPVSLXXXXXXXXXXXXXH 335
             W IIGKNL  M   G L+  I L ++++       +S L P P+                
Sbjct:  1752 WDIIGKNLLAMVAQGPLFLLITLLLQHRNRLLPQPKSRLPP-PLGEEDEDVVRERERVTK 1810

Query:   336 GADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA 395
             GA  GDVLV++ L K+Y   +   PAV+ +  G+  GECFGLLG+NGAGKT+TF+M+TG 
Sbjct:  1811 GATQGDVLVLRDLTKVYRGQRS--PAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGD 1868

Query:   396 IKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLN 455
               P+SG A +  H++          +GYCPQ DA+ D LT REHLE ++R+R VP   + 
Sbjct:  1869 TLPSSGEAVLAGHNVAQEPSAAHRSMGYCPQSDAIFDLLTGREHLELFARLRGVPEAQVA 1928

Query:   456 TIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRF 515
                   L +  L  Y+DR   T SGGNKRKL+TA+AL+G+P ++FLDEPT+GMDP ARRF
Sbjct:  1929 QTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSARRF 1988

Query:   516 LWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
             LW  +   V EGR V+LTSH+MEECEALCT+L IMVNG+F CLGSA HLKS
Sbjct:  1989 LWNNLLSVVREGRSVVLTSHSMEECEALCTRLAIMVNGRFRCLGSAQHLKS 2039

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005548 "phospholipid transporter activity" evidence=ISO

GO:0005622 "intracellular" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO;IDA

GO:0006909 "phagocytosis" evidence=IEA

GO:0010008 "endosome membrane" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=ISO

GO:0016887 "ATPase activity" evidence=IEA

GO:0033700 "phospholipid efflux" evidence=ISO

UNIPROTKB|Q7TNJ2 Abca7 "ATP-binding cassette sub-family A member 7" [Rattus norvegicus (taxid:10116)]

 Score = 711 (255.3 bits), Expect = 1.5e-96, Sum P(3) = 1.5e-96
 Identities = 143/291 (49%), Positives = 185/291 (63%)

Query:   276 WRIIGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNLHPVPVSLXXXXXXXXXXXXXH 335
             W IIGKNL  M   G L+  I L ++++       +S L P P+                
Sbjct:  1752 WDIIGKNLLAMVAQGPLFLLITLLLQHRNRLLPQPKSRLPP-PLGEEDEDVVRERERVTK 1810

Query:   336 GADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA 395
             GA  GDVLV++ L K+Y   +   PAV+ +  G+  GECFGLLG+NGAGKT+TF+M+TG 
Sbjct:  1811 GATQGDVLVLRDLTKVYRGQRS--PAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGD 1868

Query:   396 IKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLN 455
               P+SG A +  H++          +GYCPQ DA+ D LT REHLE ++R+R VP   + 
Sbjct:  1869 TLPSSGEAVLAGHNVAQEPSAAHRSMGYCPQSDAIFDLLTGREHLELFARLRGVPEAQVA 1928

Query:   456 TIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRF 515
                   L +  L  Y+DR   T SGGNKRKL+TA+AL+G+P ++FLDEPT+GMDP ARRF
Sbjct:  1929 QTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSARRF 1988

Query:   516 LWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
             LW  +   V EGR V+LTSH+MEECEALCT+L IMVNG+F CLGSA HLKS
Sbjct:  1989 LWNNLLSVVREGRSVVLTSHSMEECEALCTRLAIMVNGRFRCLGSAQHLKS 2039

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

ZFIN|ZDB-GENE-030131-9826 abca1b "ATP-binding cassette, sub-family A (ABC1), member 1B" [Danio rerio (taxid:7955)]

 Score = 734 (263.4 bits), Expect = 1.1e-95, Sum P(2) = 1.1e-95
 Identities = 145/293 (49%), Positives = 190/293 (64%)

Query:   276 WRIIGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNLHPV--PVSLXXXXXXXXXXXX 333
             W ++GKNL  MA  G ++  I + I+Y+ F   F   +L P   P+              
Sbjct:  1866 WDMVGKNLFAMAVEGVVFFIITVLIQYRFF---FEPKSLCPKLSPIGEEDEDVARERQRI 1922

Query:   334 XHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT 393
               GA  GD+L +++L K+Y   +  KPAV+++  G+  GECFGLLG+NGAGKT+TFKMLT
Sbjct:  1923 MSGAGQGDILELRQLTKVYKRKQ--KPAVDRLCVGIPPGECFGLLGVNGAGKTSTFKMLT 1980

Query:   394 GAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVL 453
             G    T G A++   SI   +D V   +GYCPQFDA+ND LT REHLEFY+ +R VP   
Sbjct:  1981 GDSVVTKGEAFIAGKSILREIDEVHQNMGYCPQFDAINDLLTGREHLEFYAILRGVPENE 2040

Query:   454 LNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR 513
             +  +    + K  L  Y D+   + SGGN RKLSTAI+L+G PP++FLDEPT+GMDP AR
Sbjct:  2041 VCAVAEWGIRKLGLVKYVDKNAGSYSGGNMRKLSTAISLIGAPPVVFLDEPTTGMDPKAR 2100

Query:   514 RFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
             R LW CI   + EGR V+LTSH+MEECEALCT++ IMVNG+F CLGS  HLK+
Sbjct:  2101 RALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKN 2153

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

MGI|MGI:1351646 Abca7 "ATP-binding cassette, sub-family A (ABC1), member 7" [Mus musculus (taxid:10090)]

 Score = 705 (253.2 bits), Expect = 2.1e-95, Sum P(3) = 2.1e-95
 Identities = 142/292 (48%), Positives = 187/292 (64%)

Query:   276 WRIIGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSN--LHPVPVSLXXXXXXXXXXXX 333
             W IIGKNL  M   G L+  I L ++++  +R   +S   L P P+              
Sbjct:  1741 WDIIGKNLLAMMAQGPLFLLITLLLQHR--NRLLPQSKPRLLP-PLGEEDEDVAQERERV 1797

Query:   334 XHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT 393
               GA  GDVLV++ L K+Y   +   PAV+++  G+  GECFGLLG+NGAGKT+TF+M+T
Sbjct:  1798 TKGATQGDVLVLRDLTKVYRGQRN--PAVDRLCLGIPPGECFGLLGVNGAGKTSTFRMVT 1855

Query:   394 GAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVL 453
             G   P+SG A +  H++          +GYCPQ DA+ D LT REHLE ++R+R VP   
Sbjct:  1856 GDTLPSSGEAVLAGHNVAQERSAAHRSMGYCPQSDAIFDLLTGREHLELFARLRGVPEAQ 1915

Query:   454 LNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR 513
             +       L +  L  Y+DR   T SGGNKRKL+TA+AL+G+P ++FLDEPT+GMDP AR
Sbjct:  1916 VAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSAR 1975

Query:   514 RFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 565
             RFLW  +   V EGR V+LTSH+MEECEALCT+L IMVNG+F CLGS+ HLK
Sbjct:  1976 RFLWNSLLSVVREGRSVVLTSHSMEECEALCTRLAIMVNGRFRCLGSSQHLK 2027

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005548 "phospholipid transporter activity" evidence=IDA

GO:0005622 "intracellular" evidence=IDA

GO:0005768 "endosome" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006909 "phagocytosis" evidence=IEA

GO:0016020 "membrane" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0033700 "phospholipid efflux" evidence=IDA

ZFIN|ZDB-GENE-031006-12 abca1a "ATP-binding cassette, sub-family A (ABC1), member 1A" [Danio rerio (taxid:7955)]

 Score = 725 (260.3 bits), Expect = 2.3e-95, Sum P(2) = 2.3e-95
 Identities = 142/292 (48%), Positives = 191/292 (65%)

Query:   275 AWRIIGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNLHPVPVSLXXXXXXXXXXXXX 334
             AW ++GKNL  MA  G ++ +I + I+Y+   +  + S     P+               
Sbjct:  1852 AWDMVGKNLFAMAIEGVIFFSITVLIQYRFCIKARSLSTKLK-PIGEEDEDVARERQRIL 1910

Query:   335 HGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 394
              G    D+L +++L K+Y   +  KPAV+++  G+  GECFGLLG+NGAGKT+TFKMLTG
Sbjct:  1911 GGGGQTDILELRQLTKVYKRKQ--KPAVDRLCVGIPPGECFGLLGVNGAGKTSTFKMLTG 1968

Query:   395 AIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLL 454
                 TSG AY+  +S+   +D V   +GYCPQFDA+ND LT REHLEFY+ +R VP   +
Sbjct:  1969 DSVVTSGEAYLAGNSVLTEIDEVHQNMGYCPQFDAINDLLTGREHLEFYAILRGVPEKEV 2028

Query:   455 NTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARR 514
               + +  + K  L  Y D+   + SGGN RKLSTA+AL+G PP++FLDEPT+GMDP ARR
Sbjct:  2029 CKVADWGIRKLGLMKYVDKAAGSYSGGNMRKLSTAMALIGGPPVVFLDEPTTGMDPKARR 2088

Query:   515 FLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
              LW CI   + EGR V+LTSH+MEECEALCT++ IMVNG+F CLGS  HLK+
Sbjct:  2089 ALWNCILSIIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKN 2140

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1MWM0 ABCA4 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 731 (262.4 bits), Expect = 1.6e-94, Sum P(2) = 1.6e-94
 Identities = 150/297 (50%), Positives = 191/297 (64%)

Query:   272 NIWAWRIIGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNLHPV--PVSLXXXXXXXX 329
             N + W +IGKNL  MA  G +Y  + L I+Y+ F   F+R    P   P++         
Sbjct:  1866 NPFQWDLIGKNLAAMAVEGVVYFLLTLLIQYQFF---FSRWTTEPAKEPITDEDDDVAEE 1922

Query:   330 XXXXXHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTF 389
                   G +  D+L +  L K+Y+ +  + PAV+++  GV  GECFGLLG+NGAGKTTTF
Sbjct:  1923 RQRIISGGNKTDILRLNELTKVYSGT--SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTF 1980

Query:   390 KMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNV 449
             KMLTG    TSG+A V   SI  ++  V   +GYCPQFDA++D LT REHL  Y+R+R V
Sbjct:  1981 KMLTGDTAVTSGDATVAGKSILTNISDVHQSMGYCPQFDAIDDLLTGREHLYLYARLRGV 2040

Query:   450 PSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 509
             P+  +  + N S+    L  Y+DR   T SGGNKRKLSTAIAL+G PPL+ LDEPT+GMD
Sbjct:  2041 PAEEIERVTNWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMD 2100

Query:   510 PGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
             P ARR LW  I   + EGR V+LTSH+MEECEALCT+L IMV G F CLG+  HLKS
Sbjct:  2101 PQARRMLWNTIMGIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKS 2157

GO:0045494 "photoreceptor cell maintenance" evidence=IEA

GO:0006649 "phospholipid transfer to membrane" evidence=IEA

GO:0004012 "phospholipid-translocating ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

UNIPROTKB|F1N8D7 ABCA4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 711 (255.3 bits), Expect = 1.9e-93, Sum P(2) = 1.9e-93
 Identities = 158/343 (46%), Positives = 212/343 (61%)

Query:   225 YNENIDGKNLTCMACHGAL-YSAINLSIEYKVFSRCFTRSNGTRLVAVNIWAWRIIGKNL 283
             +N+ +  KN+  +  H  L    I+L+I   V S  + R  G   V+ N + W  IGKNL
Sbjct:  1819 FNKTL--KNVLIVFPHFCLGRGLIDLAINQAV-SEVYARF-GEEHVS-NPFQWDFIGKNL 1873

Query:   284 TCMACHGALYSAINLSIEYKVF-SRCFTRSNLHPVPVSLXXXXXXXXXXXXXHGADSGDV 342
               MA  G  +  +NL +++++F SR F  +   P+ +               +G +  ++
Sbjct:  1874 VAMAVQGVAFFTLNLLMQHQLFPSRWFAETAKSPI-ID-EDEDVAEERKRILNGGNKTNI 1931

Query:   343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
             L ++ L KIYA     KPAV+++  G+  GECFGLLG+NGAGKTTTFKMLTG  + TSG+
Sbjct:  1932 LELQELTKIYAGRH--KPAVDRLCVGIRPGECFGLLGVNGAGKTTTFKMLTGDTEVTSGD 1989

Query:   403 AYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL 462
             A V  +SI   +  V   +GYCPQFDAL+D LT REHL  Y+R+R VP+  +  +    +
Sbjct:  1990 AVVAGNSILTHISNVHQNMGYCPQFDALDDLLTGREHLYLYARLRGVPAEEIKRVAEWGI 2049

Query:   463 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER 522
              K  L  Y+D+   T SGGNKRKLSTAIAL+G PPLI LDEPT+GMDP +RR LW  I  
Sbjct:  2050 QKLGLPMYADQLAGTYSGGNKRKLSTAIALIGCPPLILLDEPTTGMDPQSRRLLWDSIVS 2109

Query:   523 AVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 565
              + +GR V+LTSH+MEECEALCT+L IMV G F CLG+   LK
Sbjct:  2110 VLRDGRAVVLTSHSMEECEALCTRLAIMVKGTFKCLGTIQQLK 2152

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004012 "phospholipid-translocating ATPase activity" evidence=IEA

GO:0006649 "phospholipid transfer to membrane" evidence=IEA

GO:0045494 "photoreceptor cell maintenance" evidence=IEA

ZFIN|ZDB-GENE-050517-1 abca2 "ATP-binding cassette, sub-family A (ABC1), member 2" [Danio rerio (taxid:7955)]

 Score = 693 (249.0 bits), Expect = 2.7e-93, Sum P(2) = 2.7e-93
 Identities = 147/292 (50%), Positives = 181/292 (61%)

Query:   276 WRIIGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNLHPVPVSLXXXXXXXXXXXXXH 335
             W I+ + L  M   G +   I +  +Y  F R   R  ++  PV                
Sbjct:  2051 WDIVTRGLVAMTIEGFVGFLITILCQYN-FLRKAQRVPVNSQPVEDDDVDVACERRRVLR 2109

Query:   336 GADSGDVLVVKRLFKIYANSK-GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 394
             G    D+L +  L K+Y + K G   AV+++  GV  GECFGLLG+NGAGKTTTFKMLTG
Sbjct:  2110 GDADNDMLKIDNLTKVYKSRKMGRILAVDRLCLGVRPGECFGLLGVNGAGKTTTFKMLTG 2169

Query:   395 AIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLL 454
                 T G A++  HSI   +  V+  IGYCPQFDAL D LT REHLE Y+R+R +P    
Sbjct:  2170 DESTTGGEAFIQEHSILRELLRVQQSIGYCPQFDALFDDLTAREHLELYTRLRGIPWKDE 2229

Query:   455 NTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARR 514
               +V  +L K  L  Y+D+   T SGGNKRKLSTAIAL+G P LIFLDEPT+GMDP ARR
Sbjct:  2230 ERVVQWALEKLELSKYADKPAGTYSGGNKRKLSTAIALIGYPSLIFLDEPTTGMDPKARR 2289

Query:   515 FLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
             FLW  I   +  GR V+LTSH+MEECEALCT+L IMVNG+F CLGS  HLK+
Sbjct:  2290 FLWNLILDIIKTGRSVVLTSHSMEECEALCTRLGIMVNGRFKCLGSIQHLKN 2341

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|J9P747 ABCA4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 716 (257.1 bits), Expect = 3.9e-93, Sum P(2) = 3.9e-93
 Identities = 149/298 (50%), Positives = 189/298 (63%)

Query:   270 AVNIWAWRIIGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNLHPV--PVSLXXXXXX 327
             + N + W +IGKNL  MA  G +Y  + L I++  F    TR    P   P+        
Sbjct:  1727 STNPFQWDLIGKNLVAMAAEGVVYLLLTLFIQHHFF---LTRWVSEPAKEPIIDEDDDVA 1783

Query:   328 XXXXXXXHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTT 387
                     G +  D+L +  L KIY+ +  + PAV+++  GV  GECFGLLG+NGAGKTT
Sbjct:  1784 EERQRIISGGNKTDILRLNELTKIYSGT--SSPAVDRLCVGVRPGECFGLLGVNGAGKTT 1841

Query:   388 TFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVR 447
             TFKMLTG    TSG+A +   SI  ++  V   +GYCPQFDA++D LT REHL  Y+R+R
Sbjct:  1842 TFKMLTGDTTVTSGDATIAGKSILTNISDVHQSMGYCPQFDAVDDLLTGREHLYLYARLR 1901

Query:   448 NVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSG 507
              VP+  +  + N S+    L  Y+DR V T SGGNKRKLSTAIAL+G PPL+ LDEPT+G
Sbjct:  1902 GVPADEIERVANWSIQSLGLSLYADRLVGTYSGGNKRKLSTAIALMGCPPLVLLDEPTTG 1961

Query:   508 MDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 565
             MDP ARR LW  I   + EGR V+LTSH+MEECEALCT+L IMV G F CLG+  HLK
Sbjct:  1962 MDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGTFQCLGTIQHLK 2019

GO:0005524 "ATP binding" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

UNIPROTKB|F1P7E4 ABCA4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 716 (257.1 bits), Expect = 4.9e-93, Sum P(2) = 4.9e-93
 Identities = 149/298 (50%), Positives = 189/298 (63%)

Query:   270 AVNIWAWRIIGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNLHPV--PVSLXXXXXX 327
             + N + W +IGKNL  MA  G +Y  + L I++  F    TR    P   P+        
Sbjct:  1862 STNPFQWDLIGKNLVAMAAEGVVYLLLTLFIQHHFF---LTRWVSEPAKEPIIDEDDDVA 1918

Query:   328 XXXXXXXHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTT 387
                     G +  D+L +  L KIY+ +  + PAV+++  GV  GECFGLLG+NGAGKTT
Sbjct:  1919 EERQRIISGGNKTDILRLNELTKIYSGT--SSPAVDRLCVGVRPGECFGLLGVNGAGKTT 1976

Query:   388 TFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVR 447
             TFKMLTG    TSG+A +   SI  ++  V   +GYCPQFDA++D LT REHL  Y+R+R
Sbjct:  1977 TFKMLTGDTTVTSGDATIAGKSILTNISDVHQSMGYCPQFDAVDDLLTGREHLYLYARLR 2036

Query:   448 NVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSG 507
              VP+  +  + N S+    L  Y+DR V T SGGNKRKLSTAIAL+G PPL+ LDEPT+G
Sbjct:  2037 GVPADEIERVANWSIQSLGLSLYADRLVGTYSGGNKRKLSTAIALMGCPPLVLLDEPTTG 2096

Query:   508 MDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 565
             MDP ARR LW  I   + EGR V+LTSH+MEECEALCT+L IMV G F CLG+  HLK
Sbjct:  2097 MDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGTFQCLGTIQHLK 2154

GO:0005524 "ATP binding" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O35600	ABCA4_MOUSE	No assigned EC number	0.5335	0.5141	0.1259	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	566
cd03263	220	cd03263, ABC_subfamily_A, ATP-binding cassette dom	1e-107
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	4e-97
COG1131	293	COG1131, CcmA, ABC-type multidrug transport system	2e-77
cd03263	220	cd03263, ABC_subfamily_A, ATP-binding cassette dom	4e-67
cd03230	173	cd03230, ABC_DR_subfamily_A, ATP-binding cassette	4e-66
cd03265	220	cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist	2e-62
TIGR01188	302	TIGR01188, drrA, daunorubicin resistance ABC trans	3e-58
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	2e-56
cd03269	210	cd03269, ABC_putative_ATPase, ATP-binding cassette	2e-47
cd03264	211	cd03264, ABC_drug_resistance_like, ABC-type multid	5e-47
PRK13536	340	PRK13536, PRK13536, nodulation factor exporter sub	7e-47
cd03266	218	cd03266, ABC_NatA_sodium_exporter, ATP-binding cas	1e-46
COG1131	293	COG1131, CcmA, ABC-type multidrug transport system	2e-45
PRK13537	306	PRK13537, PRK13537, nodulation ABC transporter Nod	2e-45
TIGR01288	303	TIGR01288, nodI, ATP-binding ABC transporter famil	4e-45
COG4152	300	COG4152, COG4152, ABC-type uncharacterized transpo	2e-42
COG4555	245	COG4555, NatA, ABC-type Na+ transport system, ATPa	2e-42
cd03268	208	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c	2e-41
cd03225	211	cd03225, ABC_cobalt_CbiO_domain1, First domain of	4e-41
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	2e-40
TIGR03522	301	TIGR03522, GldA_ABC_ATP, gliding motility-associat	3e-40
cd00267	157	cd00267, ABC_ATPase, ATP-binding cassette transpor	3e-38
COG1122	235	COG1122, CbiO, ABC-type cobalt transport system, A	2e-35
cd03265	220	cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist	2e-34
TIGR01188	302	TIGR01188, drrA, daunorubicin resistance ABC trans	6e-34
cd03218	232	cd03218, ABC_YhbG, ATP-binding cassette component	6e-34
TIGR03740	223	TIGR03740, galliderm_ABC, gallidermin-class lantib	1e-33
COG1137	243	COG1137, YhbG, ABC-type (unclassified) transport s	2e-33
cd03219	236	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas	3e-33
COG1121	254	COG1121, ZnuC, ABC-type Mn/Zn transport systems, A	3e-33
COG1120	258	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore	3e-33
TIGR03864	236	TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi	6e-33
cd03230	173	cd03230, ABC_DR_subfamily_A, ATP-binding cassette	2e-32
cd03267	236	cd03267, ABC_NatA_like, ATP-binding cassette domai	2e-32
cd03235	213	cd03235, ABC_Metallic_Cations, ATP-binding cassett	1e-31
cd03259	213	cd03259, ABC_Carb_Solutes_like, ATP-binding casset	4e-31
cd03257	228	cd03257, ABC_NikE_OppD_transporters, ATP-binding c	6e-31
cd03255	218	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse	2e-30
cd03214	180	cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind	2e-30
COG4586	325	COG4586, COG4586, ABC-type uncharacterized transpo	3e-29
COG0411	250	COG0411, LivG, ABC-type branched-chain amino acid	3e-29
cd03224	222	cd03224, ABC_TM1139_LivF_branched, ATP-binding cas	6e-28
cd03226	205	cd03226, ABC_cobalt_CbiO_domain2, Second domain of	1e-27
PRK10895	241	PRK10895, PRK10895, lipopolysaccharide ABC transpo	3e-27
cd03264	211	cd03264, ABC_drug_resistance_like, ABC-type multid	7e-27
cd03293	220	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c	1e-26
COG1125	309	COG1125, OpuBA, ABC-type proline/glycine betaine t	2e-26
TIGR01186	363	TIGR01186, proV, glycine betaine/L-proline transpo	2e-26
cd03213	194	cd03213, ABCG_EPDR, Eye pigment and drug resistanc	3e-26
COG1116	248	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon	4e-26
TIGR01166	190	TIGR01166, cbiO, cobalt transport protein ATP-bind	5e-26
COG1119	257	COG1119, ModF, ABC-type molybdenum transport syste	6e-26
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	8e-26
cd03261	235	cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca	1e-25
COG1127	263	COG1127, Ttg2A, ABC-type transport system involved	1e-25
cd03229	178	cd03229, ABC_Class3, ATP-binding cassette domain o	2e-25
COG1123	539	COG1123, COG1123, ATPase components of various ABC	2e-25
COG1136	226	COG1136, SalX, ABC-type antimicrobial peptide tran	3e-25
PRK13537	306	PRK13537, PRK13537, nodulation ABC transporter Nod	4e-25
cd03299	235	cd03299, ABC_ModC_like, ATP-binding cassette domai	4e-25
PRK13536	340	PRK13536, PRK13536, nodulation factor exporter sub	7e-25
TIGR01288	303	TIGR01288, nodI, ATP-binding ABC transporter famil	1e-24
COG3839	338	COG3839, MalK, ABC-type sugar transport systems, A	1e-24
cd03258	233	cd03258, ABC_MetN_methionine_transporter, ATP-bind	1e-24
cd03266	218	cd03266, ABC_NatA_sodium_exporter, ATP-binding cas	2e-24
cd03301	213	cd03301, ABC_MalK_N, The N-terminal ATPase domain	2e-24
cd03269	210	cd03269, ABC_putative_ATPase, ATP-binding cassette	3e-24
cd03225	211	cd03225, ABC_cobalt_CbiO_domain1, First domain of	3e-24
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	5e-24
COG4133	209	COG4133, CcmA, ABC-type transport system involved	5e-24
cd03294	269	cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette	6e-24
COG1124	252	COG1124, DppF, ABC-type dipeptide/oligopeptide/nic	6e-24
cd03295	242	cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas	7e-24
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	2e-23
cd03245	220	cd03245, ABCC_bacteriocin_exporters, ATP-binding c	2e-23
cd03215	182	cd03215, ABC_Carb_Monos_II, Second domain of the A	2e-23
COG3638	258	COG3638, COG3638, ABC-type phosphate/phosphonate t	3e-23
cd03228	171	cd03228, ABCC_MRP_Like, ATP-binding cassette domai	3e-23
COG1135	339	COG1135, AbcC, ABC-type metal ion transport system	5e-23
PRK13632	271	PRK13632, cbiO, cobalt transporter ATP-binding sub	6e-23
cd03220	224	cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon	7e-23
COG1118	345	COG1118, CysA, ABC-type sulfate/molybdate transpor	1e-22
TIGR03411	242	TIGR03411, urea_trans_UrtD, urea ABC transporter,	1e-22
TIGR03269	520	TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc	1e-22
TIGR03375	694	TIGR03375, type_I_sec_LssB, type I secretion syste	1e-22
COG1134	249	COG1134, TagH, ABC-type polysaccharide/polyol phos	2e-22
cd03297	214	cd03297, ABC_ModC_molybdenum_transporter, ATP-bind	3e-22
COG4555	245	COG4555, NatA, ABC-type Na+ transport system, ATPa	4e-22
PRK13652	277	PRK13652, cbiO, cobalt transporter ATP-binding sub	4e-22
COG4152	300	COG4152, COG4152, ABC-type uncharacterized transpo	5e-22
TIGR01189	198	TIGR01189, ccmA, heme ABC exporter, ATP-binding pr	6e-22
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	7e-22
cd00267	157	cd00267, ABC_ATPase, ATP-binding cassette transpor	1e-21
TIGR00968	237	TIGR00968, 3a0106s01, sulfate ABC transporter, ATP	1e-21
TIGR03771	223	TIGR03771, anch_rpt_ABC, anchored repeat-type ABC	2e-21
COG4674	249	COG4674, COG4674, Uncharacterized ABC-type transpo	2e-21
cd03234	226	cd03234, ABCG_White, White pigment protein homolog	3e-21
COG4175	386	COG4175, ProV, ABC-type proline/glycine betaine tr	5e-21
TIGR03608	206	TIGR03608, L_ocin_972_ABC, putative bacteriocin ex	5e-21
cd03231	201	cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog	6e-21
pfam00005	119	pfam00005, ABC_tran, ABC transporter	6e-21
cd03268	208	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c	7e-21
TIGR02315	243	TIGR02315, ABC_phnC, phosphonate ABC transporter,	8e-21
PRK13539	207	PRK13539, PRK13539, cytochrome c biogenesis protei	1e-20
cd03300	232	cd03300, ABC_PotA_N, ATP-binding cassette domain o	1e-20
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	3e-20
COG3842	352	COG3842, PotA, ABC-type spermidine/putrescine tran	3e-20
cd03256	241	cd03256, ABC_PhnC_transporter, ATP-binding cassett	3e-20
PRK13650	279	PRK13650, cbiO, cobalt transporter ATP-binding sub	4e-20
COG1123	539	COG1123, COG1123, ATPase components of various ABC	7e-20
COG2884	223	COG2884, FtsE, Predicted ATPase involved in cell d	7e-20
PRK13633	280	PRK13633, PRK13633, cobalt transporter ATP-binding	8e-20
cd03246	173	cd03246, ABCC_Protease_Secretion, ATP-binding cass	9e-20
PRK13639	275	PRK13639, cbiO, cobalt transporter ATP-binding sub	1e-19
COG2274	709	COG2274, SunT, ABC-type bacteriocin/lantibiotic ex	1e-19
PRK13637	287	PRK13637, cbiO, cobalt transporter ATP-binding sub	1e-19
PRK13538	204	PRK13538, PRK13538, cytochrome c biogenesis protei	2e-19
COG0410	237	COG0410, LivF, ABC-type branched-chain amino acid	2e-19
TIGR02673	214	TIGR02673, FtsE, cell division ATP-binding protein	2e-19
cd03247	178	cd03247, ABCC_cytochrome_bd, ATP-binding cassette	6e-19
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	9e-19
cd03292	214	cd03292, ABC_FtsE_transporter, ATP-binding cassett	1e-18
COG4619	223	COG4619, COG4619, ABC-type uncharacterized transpo	1e-18
COG4525	259	COG4525, TauB, ABC-type taurine transport system,	1e-18
TIGR00955	617	TIGR00955, 3a01204, The Eye Pigment Precursor Tran	1e-18
COG1121	254	COG1121, ZnuC, ABC-type Mn/Zn transport systems, A	2e-18
COG0444	316	COG0444, DppD, ABC-type dipeptide/oligopeptide/nic	2e-18
COG1122	235	COG1122, CbiO, ABC-type cobalt transport system, A	3e-18
COG4608	268	COG4608, AppF, ABC-type oligopeptide transport sys	5e-18
PRK13648	269	PRK13648, cbiO, cobalt transporter ATP-binding sub	7e-18
TIGR02324	224	TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys	8e-18
cd03213	194	cd03213, ABCG_EPDR, Eye pigment and drug resistanc	9e-18
TIGR02314	343	TIGR02314, ABC_MetN, D-methionine ABC transporter,	9e-18
PRK09700	510	PRK09700, PRK09700, D-allose transporter ATP-bindi	9e-18
cd03221	144	cd03221, ABCF_EF-3, ATP-binding cassette domain of	1e-17
cd03260	227	cd03260, ABC_PstB_phosphate_transporter, ATP-bindi	1e-17
PRK13540	200	PRK13540, PRK13540, cytochrome c biogenesis protei	1e-17
PRK15439	510	PRK15439, PRK15439, autoinducer 2 ABC transporter	2e-17
PRK11607	377	PRK11607, potG, putrescine transporter ATP-binding	2e-17
COG4618	580	COG4618, ArpD, ABC-type protease/lipase transport	3e-17
TIGR03410	230	TIGR03410, urea_trans_UrtE, urea ABC transporter,	3e-17
PRK15056	272	PRK15056, PRK15056, manganese/iron transporter ATP	3e-17
TIGR01842	544	TIGR01842, type_I_sec_PrtD, type I secretion syste	3e-17
PRK13640	282	PRK13640, cbiO, cobalt transporter ATP-binding sub	4e-17
cd03296	239	cd03296, ABC_CysA_sulfate_importer, ATP-binding ca	4e-17
PRK13548	258	PRK13548, hmuV, hemin importer ATP-binding subunit	6e-17
PRK13644	274	PRK13644, cbiO, cobalt transporter ATP-binding sub	6e-17
cd03232	192	cd03232, ABCG_PDR_domain2, Second domain of the pl	7e-17
TIGR01277	213	TIGR01277, thiQ, thiamine ABC transporter, ATP-bin	7e-17
cd03219	236	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas	8e-17
TIGR03522	301	TIGR03522, GldA_ABC_ATP, gliding motility-associat	1e-16
PRK13647	274	PRK13647, cbiO, cobalt transporter ATP-binding sub	1e-16
cd03226	205	cd03226, ABC_cobalt_CbiO_domain2, Second domain of	2e-16
PRK13636	283	PRK13636, cbiO, cobalt transporter ATP-binding sub	2e-16
TIGR02142	354	TIGR02142, modC_ABC, molybdenum ABC transporter, A	2e-16
cd03251	234	cd03251, ABCC_MsbA, ATP-binding cassette domain of	2e-16
PRK10762	501	PRK10762, PRK10762, D-ribose transporter ATP bindi	2e-16
TIGR02857	529	TIGR02857, CydD, thiol reductant ABC exporter, Cyd	3e-16
cd03253	236	cd03253, ABCC_ATM1_transporter, ATP-binding casset	3e-16
COG4987	573	COG4987, CydC, ABC-type transport system involved	3e-16
COG4559	259	COG4559, COG4559, ABC-type hemin transport system,	4e-16
PRK13635	279	PRK13635, cbiO, cobalt transporter ATP-binding sub	4e-16
TIGR01187	325	TIGR01187, potA, spermidine/putrescine ABC transpo	4e-16
cd03259	213	cd03259, ABC_Carb_Solutes_like, ATP-binding casset	5e-16
PRK11288	501	PRK11288, araG, L-arabinose transporter ATP-bindin	5e-16
PRK09536	402	PRK09536, btuD, corrinoid ABC transporter ATPase;	6e-16
TIGR02868	530	TIGR02868, CydC, thiol reductant ABC exporter, Cyd	6e-16
TIGR02211	221	TIGR02211, LolD_lipo_ex, lipoprotein releasing sys	7e-16
PRK14250	241	PRK14250, PRK14250, phosphate ABC transporter ATP-	7e-16
cd03235	213	cd03235, ABC_Metallic_Cations, ATP-binding cassett	9e-16
TIGR03740	223	TIGR03740, galliderm_ABC, gallidermin-class lantib	1e-15
cd03234	226	cd03234, ABCG_White, White pigment protein homolog	1e-15
COG1101	263	COG1101, PhnK, ABC-type uncharacterized transport	1e-15
TIGR03258	362	TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans	1e-15
PRK13646	286	PRK13646, cbiO, cobalt transporter ATP-binding sub	1e-15
PRK10070	400	PRK10070, PRK10070, glycine betaine transporter AT	1e-15
TIGR02769	265	TIGR02769, nickel_nikE, nickel import ATP-binding	1e-15
TIGR03864	236	TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi	2e-15
COG4604	252	COG4604, CeuD, ABC-type enterochelin transport sys	2e-15
COG4988	559	COG4988, CydD, ABC-type transport system involved	2e-15
PRK13638	271	PRK13638, cbiO, cobalt transporter ATP-binding sub	3e-15
TIGR01184	230	TIGR01184, ntrCD, nitrate transport ATP-binding su	3e-15
COG4778	235	COG4778, PhnL, ABC-type phosphonate transport syst	4e-15
COG4148	352	COG4148, ModC, ABC-type molybdate transport system	4e-15
PRK13543	214	PRK13543, PRK13543, cytochrome c biogenesis protei	4e-15
PRK09544	251	PRK09544, znuC, high-affinity zinc transporter ATP	4e-15
COG1120	258	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore	5e-15
PRK11300	255	PRK11300, livG, leucine/isoleucine/valine transpor	5e-15
TIGR02633	500	TIGR02633, xylG, D-xylose ABC transporter, ATP-bin	8e-15
cd03214	180	cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind	9e-15
cd03299	235	cd03299, ABC_ModC_like, ATP-binding cassette domai	9e-15
PRK13549	506	PRK13549, PRK13549, xylose transporter ATP-binding	1e-14
PRK13631	320	PRK13631, cbiO, cobalt transporter ATP-binding sub	1e-14
PRK10895	241	PRK10895, PRK10895, lipopolysaccharide ABC transpo	2e-14
PRK11231	255	PRK11231, fecE, iron-dicitrate transporter ATP-bin	2e-14
cd03297	214	cd03297, ABC_ModC_molybdenum_transporter, ATP-bind	3e-14
PRK13545	549	PRK13545, tagH, teichoic acids export protein ATP-	3e-14
PRK09452	375	PRK09452, potA, putrescine/spermidine ABC transpor	3e-14
COG1132	567	COG1132, MdlB, ABC-type multidrug transport system	3e-14
PRK09984	262	PRK09984, PRK09984, phosphonate/organophosphate es	4e-14
pfam00005	119	pfam00005, ABC_tran, ABC transporter	5e-14
TIGR01166	190	TIGR01166, cbiO, cobalt transport protein ATP-bind	6e-14
PRK09700	510	PRK09700, PRK09700, D-allose transporter ATP-bindi	6e-14
PRK11248	255	PRK11248, tauB, taurine transporter ATP-binding su	6e-14
COG4161	242	COG4161, ArtP, ABC-type arginine transport system,	8e-14
PRK11153	343	PRK11153, metN, DL-methionine transporter ATP-bind	9e-14
cd03267	236	cd03267, ABC_NatA_like, ATP-binding cassette domai	1e-13
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	1e-13
cd03262	213	cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai	1e-13
PRK13643	288	PRK13643, cbiO, cobalt transporter ATP-binding sub	1e-13
PRK11614	237	PRK11614, livF, leucine/isoleucine/valine transpor	1e-13
cd03254	229	cd03254, ABCC_Glucan_exporter_like, ATP-binding ca	1e-13
COG1126	240	COG1126, GlnQ, ABC-type polar amino acid transport	2e-13
TIGR02323	253	TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys	2e-13
PRK14262	250	PRK14262, PRK14262, phosphate ABC transporter ATP-	2e-13
PRK13409	590	PRK13409, PRK13409, putative ATPase RIL; Provision	2e-13
COG4586	325	COG4586, COG4586, ABC-type uncharacterized transpo	3e-13
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	3e-13
COG4181	228	COG4181, COG4181, Predicted ABC-type transport sys	3e-13
cd03229	178	cd03229, ABC_Class3, ATP-binding cassette domain o	4e-13
PRK11432	351	PRK11432, fbpC, ferric transporter ATP-binding sub	4e-13
cd03218	232	cd03218, ABC_YhbG, ATP-binding cassette component	5e-13
COG0411	250	COG0411, LivG, ABC-type branched-chain amino acid	5e-13
PRK13546	264	PRK13546, PRK13546, teichoic acids export protein	5e-13
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	6e-13
PRK15439	510	PRK15439, PRK15439, autoinducer 2 ABC transporter	7e-13
TIGR01189	198	TIGR01189, ccmA, heme ABC exporter, ATP-binding pr	8e-13
cd03232	192	cd03232, ABCG_PDR_domain2, Second domain of the pl	8e-13
COG1127	263	COG1127, Ttg2A, ABC-type transport system involved	1e-12
cd03215	182	cd03215, ABC_Carb_Monos_II, Second domain of the A	1e-12
PRK11288	501	PRK11288, araG, L-arabinose transporter ATP-bindin	1e-12
cd03237	246	cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin	1e-12
TIGR03873	256	TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra	1e-12
PRK11160	574	PRK11160, PRK11160, cysteine/glutathione ABC trans	1e-12
COG1137	243	COG1137, YhbG, ABC-type (unclassified) transport s	2e-12
COG4133	209	COG4133, CcmA, ABC-type transport system involved	2e-12
TIGR00955	617	TIGR00955, 3a01204, The Eye Pigment Precursor Tran	2e-12
cd03216	163	cd03216, ABC_Carb_Monos_I, First domain of the ATP	2e-12
cd03231	201	cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog	3e-12
PRK13541	195	PRK13541, PRK13541, cytochrome c biogenesis protei	3e-12
TIGR02203	571	TIGR02203, MsbA_lipidA, lipid A export permease/AT	3e-12
cd03261	235	cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca	4e-12
PRK11629	233	PRK11629, lolD, lipoprotein transporter ATP-bindin	4e-12
COG1116	248	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon	5e-12
PRK14246	257	PRK14246, PRK14246, phosphate ABC transporter ATP-	5e-12
COG4136	213	COG4136, COG4136, ABC-type uncharacterized transpo	5e-12
PRK13657	588	PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra	5e-12
cd03224	222	cd03224, ABC_TM1139_LivF_branched, ATP-binding cas	6e-12
TIGR03608	206	TIGR03608, L_ocin_972_ABC, putative bacteriocin ex	6e-12
COG4525	259	COG4525, TauB, ABC-type taurine transport system,	6e-12
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	6e-12
PRK11831	269	PRK11831, PRK11831, putative ABC transporter ATP-b	6e-12
PLN03211	659	PLN03211, PLN03211, ABC transporter G-25; Provisio	7e-12
cd03301	213	cd03301, ABC_MalK_N, The N-terminal ATPase domain	8e-12
TIGR00968	237	TIGR00968, 3a0106s01, sulfate ABC transporter, ATP	8e-12
PRK10982	491	PRK10982, PRK10982, galactose/methyl galaxtoside t	8e-12
COG4107	258	COG4107, PhnK, ABC-type phosphonate transport syst	8e-12
PRK13539	207	PRK13539, PRK13539, cytochrome c biogenesis protei	9e-12
cd03255	218	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse	1e-11
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	1e-11
COG3840	231	COG3840, ThiQ, ABC-type thiamine transport system,	1e-11
TIGR02770	230	TIGR02770, nickel_nikD, nickel import ATP-binding	1e-11
cd03233	202	cd03233, ABCG_PDR_domain1, First domain of the ple	1e-11
cd03250	204	cd03250, ABCC_MRP_domain1, ATP-binding cassette do	1e-11
COG1119	257	COG1119, ModF, ABC-type molybdenum transport syste	2e-11
PRK13538	204	PRK13538, PRK13538, cytochrome c biogenesis protei	2e-11
cd03216	163	cd03216, ABC_Carb_Monos_I, First domain of the ATP	2e-11
cd03216	163	cd03216, ABC_Carb_Monos_I, First domain of the ATP	2e-11
PLN03140	1470	PLN03140, PLN03140, ABC transporter G family membe	2e-11
PRK09493	240	PRK09493, glnQ, glutamine ABC transporter ATP-bind	2e-11
TIGR02204	576	TIGR02204, MsbA_rel, ABC transporter, permease/ATP	2e-11
cd03257	228	cd03257, ABC_NikE_OppD_transporters, ATP-binding c	3e-11
COG3839	338	COG3839, MalK, ABC-type sugar transport systems, A	3e-11
TIGR02142	354	TIGR02142, modC_ABC, molybdenum ABC transporter, A	3e-11
PRK10619	257	PRK10619, PRK10619, histidine/lysine/arginine/orni	3e-11
TIGR03265	353	TIGR03265, PhnT2, putative 2-aminoethylphosphonate	3e-11
cd03252	237	cd03252, ABCC_Hemolysin, ATP-binding cassette doma	3e-11
TIGR03771	223	TIGR03771, anch_rpt_ABC, anchored repeat-type ABC	5e-11
PRK13642	277	PRK13642, cbiO, cobalt transporter ATP-binding sub	5e-11
PRK13641	287	PRK13641, cbiO, cobalt transporter ATP-binding sub	6e-11
PRK10247	225	PRK10247, PRK10247, putative ABC transporter ATP-b	6e-11
PRK13631	320	PRK13631, cbiO, cobalt transporter ATP-binding sub	7e-11
PRK13652	277	PRK13652, cbiO, cobalt transporter ATP-binding sub	9e-11
TIGR02982	220	TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi	9e-11
PRK13650	279	PRK13650, cbiO, cobalt transporter ATP-binding sub	1e-10
PRK11264	250	PRK11264, PRK11264, putative amino-acid ABC transp	1e-10
TIGR01193	708	TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t	1e-10
PRK14261	253	PRK14261, PRK14261, phosphate ABC transporter ATP-	1e-10
COG1118	345	COG1118, CysA, ABC-type sulfate/molybdate transpor	2e-10
TIGR01277	213	TIGR01277, thiQ, thiamine ABC transporter, ATP-bin	2e-10
PRK14274	259	PRK14274, PRK14274, phosphate ABC transporter ATP-	2e-10
cd03293	220	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c	3e-10
COG1136	226	COG1136, SalX, ABC-type antimicrobial peptide tran	3e-10
cd03236	255	cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin	3e-10
COG5265	497	COG5265, ATM1, ABC-type transport system involved	3e-10
PRK13646	286	PRK13646, cbiO, cobalt transporter ATP-binding sub	4e-10
PRK13638	271	PRK13638, cbiO, cobalt transporter ATP-binding sub	4e-10
COG4148	352	COG4148, ModC, ABC-type molybdate transport system	4e-10
TIGR01186	363	TIGR01186, proV, glycine betaine/L-proline transpo	5e-10
cd03298	211	cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin	5e-10
COG4167	267	COG4167, SapF, ABC-type antimicrobial peptide tran	5e-10
PRK13637	287	PRK13637, cbiO, cobalt transporter ATP-binding sub	6e-10
TIGR03719	552	TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot	6e-10
PRK14262	250	PRK14262, PRK14262, phosphate ABC transporter ATP-	7e-10
COG1117	253	COG1117, PstB, ABC-type phosphate transport system	7e-10
PRK13632	271	PRK13632, cbiO, cobalt transporter ATP-binding sub	8e-10
PRK14248	268	PRK14248, PRK14248, phosphate ABC transporter ATP-	8e-10
cd03228	171	cd03228, ABCC_MRP_Like, ATP-binding cassette domai	9e-10
PRK13634	290	PRK13634, cbiO, cobalt transporter ATP-binding sub	9e-10
COG0396	251	COG0396, sufC, Cysteine desulfurase activator ATPa	9e-10
COG1125	309	COG1125, OpuBA, ABC-type proline/glycine betaine t	1e-09
TIGR03269	520	TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc	1e-09
TIGR03375	694	TIGR03375, type_I_sec_LssB, type I secretion syste	1e-09
COG4987	573	COG4987, CydC, ABC-type transport system involved	1e-09
TIGR01187	325	TIGR01187, potA, spermidine/putrescine ABC transpo	1e-09
PRK14250	241	PRK14250, PRK14250, phosphate ABC transporter ATP-	1e-09
TIGR03258	362	TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans	1e-09
PRK10851	353	PRK10851, PRK10851, sulfate/thiosulfate transporte	1e-09
cd03369	207	cd03369, ABCC_NFT1, ATP-binding cassette domain 2	1e-09
PRK13649	280	PRK13649, cbiO, cobalt transporter ATP-binding sub	1e-09
cd03245	220	cd03245, ABCC_bacteriocin_exporters, ATP-binding c	2e-09
COG1135	339	COG1135, AbcC, ABC-type metal ion transport system	2e-09
COG4175	386	COG4175, ProV, ABC-type proline/glycine betaine tr	2e-09
PRK13648	269	PRK13648, cbiO, cobalt transporter ATP-binding sub	2e-09
COG4615	546	COG4615, PvdE, ABC-type siderophore export system,	2e-09
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	2e-09
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	2e-09
COG4178	604	COG4178, COG4178, ABC-type uncharacterized transpo	3e-09
cd03295	242	cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas	4e-09
COG4674	249	COG4674, COG4674, Uncharacterized ABC-type transpo	4e-09
TIGR02314	343	TIGR02314, ABC_MetN, D-methionine ABC transporter,	4e-09
PRK14273	254	PRK14273, PRK14273, phosphate ABC transporter ATP-	4e-09
PRK10938	490	PRK10938, PRK10938, putative molybdenum transport	4e-09
COG1124	252	COG1124, DppF, ABC-type dipeptide/oligopeptide/nic	5e-09
cd03246	173	cd03246, ABCC_Protease_Secretion, ATP-binding cass	5e-09
TIGR02633	500	TIGR02633, xylG, D-xylose ABC transporter, ATP-bin	5e-09
PRK13645	289	PRK13645, cbiO, cobalt transporter ATP-binding sub	5e-09
PRK13409	590	PRK13409, PRK13409, putative ATPase RIL; Provision	7e-09
COG1123	539	COG1123, COG1123, ATPase components of various ABC	8e-09
PRK10762	501	PRK10762, PRK10762, D-ribose transporter ATP bindi	8e-09
TIGR03719	552	TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot	8e-09
PRK11701	258	PRK11701, phnK, phosphonate C-P lyase system prote	8e-09
COG3638	258	COG3638, COG3638, ABC-type phosphate/phosphonate t	9e-09
PRK13640	282	PRK13640, cbiO, cobalt transporter ATP-binding sub	9e-09
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	9e-09
TIGR03411	242	TIGR03411, urea_trans_UrtD, urea ABC transporter,	1e-08
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	1e-08
cd03260	227	cd03260, ABC_PstB_phosphate_transporter, ATP-bindi	1e-08
PRK13644	274	PRK13644, cbiO, cobalt transporter ATP-binding sub	1e-08
PRK11160	574	PRK11160, PRK11160, cysteine/glutathione ABC trans	1e-08
PRK14261	253	PRK14261, PRK14261, phosphate ABC transporter ATP-	1e-08
COG4598	256	COG4598, HisP, ABC-type histidine transport system	1e-08
PRK14260	259	PRK14260, PRK14260, phosphate ABC transporter ATP-	1e-08
TIGR00972	247	TIGR00972, 3a0107s01c2, phosphate ABC transporter,	1e-08
cd03294	269	cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette	2e-08
PRK09700	510	PRK09700, PRK09700, D-allose transporter ATP-bindi	2e-08
PRK13549	506	PRK13549, PRK13549, xylose transporter ATP-binding	2e-08
COG3840	231	COG3840, ThiQ, ABC-type thiamine transport system,	2e-08
PLN03140	1470	PLN03140, PLN03140, ABC transporter G family membe	2e-08
PRK10636	638	PRK10636, PRK10636, putative ABC transporter ATP-b	2e-08
cd03249	238	cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett	2e-08
PRK10575	265	PRK10575, PRK10575, iron-hydroxamate transporter A	2e-08
PRK14251	251	PRK14251, PRK14251, phosphate ABC transporter ATP-	2e-08
TIGR03415	382	TIGR03415, ABC_choXWV_ATP, choline ABC transporter	2e-08
TIGR01192	585	TIGR01192, chvA, glucan exporter ATP-binding prote	2e-08
cd03258	233	cd03258, ABC_MetN_methionine_transporter, ATP-bind	3e-08
PRK13633	280	PRK13633, PRK13633, cobalt transporter ATP-binding	3e-08
PRK13549	506	PRK13549, PRK13549, xylose transporter ATP-binding	3e-08
PRK14275	286	PRK14275, PRK14275, phosphate ABC transporter ATP-	3e-08
PRK14275	286	PRK14275, PRK14275, phosphate ABC transporter ATP-	3e-08
PRK15134	529	PRK15134, PRK15134, microcin C ABC transporter ATP	3e-08
PRK11144	352	PRK11144, modC, molybdate transporter ATP-binding	3e-08
PRK11124	242	PRK11124, artP, arginine transporter ATP-binding s	3e-08
TIGR02868	530	TIGR02868, CydC, thiol reductant ABC exporter, Cyd	4e-08
TIGR01184	230	TIGR01184, ntrCD, nitrate transport ATP-binding su	4e-08
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	4e-08
PRK14254	285	PRK14254, PRK14254, phosphate ABC transporter ATP-	4e-08
PRK14254	285	PRK14254, PRK14254, phosphate ABC transporter ATP-	4e-08
TIGR03873	256	TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra	5e-08
PRK10982	491	PRK10982, PRK10982, galactose/methyl galaxtoside t	5e-08
cd03217	200	cd03217, ABC_FeS_Assembly, ABC-type transport syst	5e-08
TIGR01271	1490	TIGR01271, CFTR_protein, cystic fibrosis transmemb	5e-08
PRK15112	267	PRK15112, PRK15112, antimicrobial peptide ABC syst	5e-08
PRK13639	275	PRK13639, cbiO, cobalt transporter ATP-binding sub	6e-08
cd03221	144	cd03221, ABCF_EF-3, ATP-binding cassette domain of	6e-08
cd03253	236	cd03253, ABCC_ATM1_transporter, ATP-binding casset	6e-08
PRK09536	402	PRK09536, btuD, corrinoid ABC transporter ATPase;	6e-08
PRK13634	290	PRK13634, cbiO, cobalt transporter ATP-binding sub	6e-08
cd03244	221	cd03244, ABCC_MRP_domain2, ATP-binding cassette do	6e-08
cd03291	282	cd03291, ABCC_CFTR1, ATP-binding cassette domain o	6e-08
PRK10535	648	PRK10535, PRK10535, macrolide transporter ATP-bind	6e-08
cd03248	226	cd03248, ABCC_TAP, ATP-binding cassette domain of	7e-08
COG4161	242	COG4161, ArtP, ABC-type arginine transport system,	8e-08
COG4138	248	COG4138, BtuD, ABC-type cobalamin transport system	8e-08
PRK10762	501	PRK10762, PRK10762, D-ribose transporter ATP bindi	9e-08
PLN03211	659	PLN03211, PLN03211, ABC transporter G-25; Provisio	9e-08
PRK13645	289	PRK13645, cbiO, cobalt transporter ATP-binding sub	9e-08
pfam13304	256	pfam13304, AAA_21, AAA domain	9e-08
pfam13304	256	pfam13304, AAA_21, AAA domain	9e-08
PRK15064	530	PRK15064, PRK15064, ABC transporter ATP-binding pr	9e-08
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	1e-07
cd03247	178	cd03247, ABCC_cytochrome_bd, ATP-binding cassette	1e-07
COG1101	263	COG1101, PhnK, ABC-type uncharacterized transport	1e-07
COG4988	559	COG4988, CydD, ABC-type transport system involved	1e-07
TIGR02633	500	TIGR02633, xylG, D-xylose ABC transporter, ATP-bin	1e-07
cd03298	211	cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin	1e-07
PRK14271	276	PRK14271, PRK14271, phosphate ABC transporter ATP-	1e-07
cd03240	204	cd03240, ABC_Rad50, ATP-binding cassette domain of	1e-07
cd03222	177	cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett	1e-07
TIGR02315	243	TIGR02315, ABC_phnC, phosphonate ABC transporter,	2e-07
COG0444	316	COG0444, DppD, ABC-type dipeptide/oligopeptide/nic	2e-07
PRK09700	510	PRK09700, PRK09700, D-allose transporter ATP-bindi	2e-07
PRK15056	272	PRK15056, PRK15056, manganese/iron transporter ATP	2e-07
PRK13647	274	PRK13647, cbiO, cobalt transporter ATP-binding sub	2e-07
COG4559	259	COG4559, COG4559, ABC-type hemin transport system,	2e-07
PRK13635	279	PRK13635, cbiO, cobalt transporter ATP-binding sub	2e-07
PRK11288	501	PRK11288, araG, L-arabinose transporter ATP-bindin	2e-07
PRK09984	262	PRK09984, PRK09984, phosphonate/organophosphate es	2e-07
PRK13643	288	PRK13643, cbiO, cobalt transporter ATP-binding sub	2e-07
COG1126	240	COG1126, GlnQ, ABC-type polar amino acid transport	2e-07
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	2e-07
PRK14273	254	PRK14273, PRK14273, phosphate ABC transporter ATP-	2e-07
PRK14272	252	PRK14272, PRK14272, phosphate ABC transporter ATP-	2e-07
cd03238	176	cd03238, ABC_UvrA, ATP-binding cassette domain of	2e-07
cd03238	176	cd03238, ABC_UvrA, ATP-binding cassette domain of	2e-07
cd03220	224	cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon	3e-07
TIGR02673	214	TIGR02673, FtsE, cell division ATP-binding protein	3e-07
PRK13641	287	PRK13641, cbiO, cobalt transporter ATP-binding sub	3e-07
PRK14274	259	PRK14274, PRK14274, phosphate ABC transporter ATP-	3e-07
TIGR01978	243	TIGR01978, sufC, FeS assembly ATPase SufC	3e-07
TIGR01194	555	TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo	3e-07
PRK11819	556	PRK11819, PRK11819, putative ABC transporter ATP-b	3e-07
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	4e-07
TIGR02857	529	TIGR02857, CydD, thiol reductant ABC exporter, Cyd	4e-07
PRK14257	329	PRK14257, PRK14257, phosphate ABC transporter ATP-	4e-07
TIGR03269	520	TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc	5e-07
PRK11248	255	PRK11248, tauB, taurine transporter ATP-binding su	5e-07
TIGR02323	253	TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys	5e-07
PRK09493	240	PRK09493, glnQ, glutamine ABC transporter ATP-bind	5e-07
COG4178	604	COG4178, COG4178, ABC-type uncharacterized transpo	5e-07
TIGR01846	694	TIGR01846, type_I_sec_HlyB, type I secretion syste	5e-07
PRK11147	635	PRK11147, PRK11147, ABC transporter ATPase compone	5e-07
PRK14269	246	PRK14269, PRK14269, phosphate ABC transporter ATP-	5e-07
cd03250	204	cd03250, ABCC_MRP_domain1, ATP-binding cassette do	6e-07
PRK14248	268	PRK14248, PRK14248, phosphate ABC transporter ATP-	6e-07
PRK13649	280	PRK13649, cbiO, cobalt transporter ATP-binding sub	6e-07
PRK10522	547	PRK10522, PRK10522, multidrug transporter membrane	6e-07
TIGR03269	520	TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc	7e-07
COG4619	223	COG4619, COG4619, ABC-type uncharacterized transpo	7e-07
PRK10070	400	PRK10070, PRK10070, glycine betaine transporter AT	7e-07
PRK10908	222	PRK10908, PRK10908, cell division protein FtsE; Pr	7e-07
COG1123	539	COG1123, COG1123, ATPase components of various ABC	8e-07
PRK11176	582	PRK11176, PRK11176, lipid transporter ATP-binding/	8e-07
COG4136	213	COG4136, COG4136, ABC-type uncharacterized transpo	9e-07
PRK11308	327	PRK11308, dppF, dipeptide transporter ATP-binding	9e-07
COG3842	352	COG3842, PotA, ABC-type spermidine/putrescine tran	1e-06
COG2274	709	COG2274, SunT, ABC-type bacteriocin/lantibiotic ex	1e-06
PRK11607	377	PRK11607, potG, putrescine transporter ATP-binding	1e-06
PRK13548	258	PRK13548, hmuV, hemin importer ATP-binding subunit	1e-06
PRK11231	255	PRK11231, fecE, iron-dicitrate transporter ATP-bin	1e-06
PRK03695	248	PRK03695, PRK03695, vitamin B12-transporter ATPase	1e-06
PRK14237	267	PRK14237, PRK14237, phosphate transporter ATP-bind	1e-06
PRK14264	305	PRK14264, PRK14264, phosphate ABC transporter ATP-	1e-06
PRK10253	265	PRK10253, PRK10253, iron-enterobactin transporter	1e-06
PRK14268	258	PRK14268, PRK14268, phosphate ABC transporter ATP-	1e-06
PRK13651	305	PRK13651, PRK13651, cobalt transporter ATP-binding	1e-06
PRK13651	305	PRK13651, PRK13651, cobalt transporter ATP-binding	1e-06
COG1134	249	COG1134, TagH, ABC-type polysaccharide/polyol phos	2e-06
cd03300	232	cd03300, ABC_PotA_N, ATP-binding cassette domain o	2e-06
PRK15439	510	PRK15439, PRK15439, autoinducer 2 ABC transporter	2e-06
TIGR01842	544	TIGR01842, type_I_sec_PrtD, type I secretion syste	2e-06
cd03251	234	cd03251, ABCC_MsbA, ATP-binding cassette domain of	2e-06
cd03262	213	cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai	2e-06
COG4107	258	COG4107, PhnK, ABC-type phosphonate transport syst	2e-06
PRK14235	267	PRK14235, PRK14235, phosphate transporter ATP-bind	2e-06
TIGR03005	252	TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB	2e-06
PRK14270	251	PRK14270, PRK14270, phosphate ABC transporter ATP-	2e-06
PRK14256	252	PRK14256, PRK14256, phosphate ABC transporter ATP-	2e-06
PRK10419	268	PRK10419, nikE, nickel transporter ATP-binding pro	2e-06
TIGR03797	686	TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste	2e-06
COG2884	223	COG2884, FtsE, Predicted ATPase involved in cell d	3e-06
cd03296	239	cd03296, ABC_CysA_sulfate_importer, ATP-binding ca	3e-06
COG4604	252	COG4604, CeuD, ABC-type enterochelin transport sys	3e-06
PRK14246	257	PRK14246, PRK14246, phosphate ABC transporter ATP-	3e-06
PRK14251	251	PRK14251, PRK14251, phosphate ABC transporter ATP-	3e-06
PRK11819	556	PRK11819, PRK11819, putative ABC transporter ATP-b	3e-06
PRK14264	305	PRK14264, PRK14264, phosphate ABC transporter ATP-	3e-06
PRK10584	228	PRK10584, PRK10584, putative ABC transporter ATP-b	3e-06
PRK14240	250	PRK14240, PRK14240, phosphate transporter ATP-bind	3e-06
PRK11000	369	PRK11000, PRK11000, maltose/maltodextrin transport	3e-06
PRK14252	265	PRK14252, PRK14252, phosphate ABC transporter ATP-	3e-06
PRK14252	265	PRK14252, PRK14252, phosphate ABC transporter ATP-	3e-06
PRK14239	252	PRK14239, PRK14239, phosphate transporter ATP-bind	3e-06
cd03292	214	cd03292, ABC_FtsE_transporter, ATP-binding cassett	4e-06
COG4618	580	COG4618, ArpD, ABC-type protease/lipase transport	4e-06
PRK13636	283	PRK13636, cbiO, cobalt transporter ATP-binding sub	4e-06
PRK15064	530	PRK15064, PRK15064, ABC transporter ATP-binding pr	4e-06
PRK14238	271	PRK14238, PRK14238, phosphate transporter ATP-bind	4e-06
PRK13543	214	PRK13543, PRK13543, cytochrome c biogenesis protei	5e-06
PRK09452	375	PRK09452, potA, putrescine/spermidine ABC transpor	5e-06
cd03233	202	cd03233, ABCG_PDR_domain1, First domain of the ple	5e-06
PRK11264	250	PRK11264, PRK11264, putative amino-acid ABC transp	5e-06
PRK14257	329	PRK14257, PRK14257, phosphate ABC transporter ATP-	5e-06
PRK14269	246	PRK14269, PRK14269, phosphate ABC transporter ATP-	5e-06
cd03227	162	cd03227, ABC_Class2, ATP-binding cassette domain o	5e-06
cd03227	162	cd03227, ABC_Class2, ATP-binding cassette domain o	5e-06
PRK14255	252	PRK14255, PRK14255, phosphate ABC transporter ATP-	5e-06
PRK10619	257	PRK10619, PRK10619, histidine/lysine/arginine/orni	6e-06
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	7e-06
PRK14240	250	PRK14240, PRK14240, phosphate transporter ATP-bind	7e-06
cd03256	241	cd03256, ABC_PhnC_transporter, ATP-binding cassett	8e-06
PRK09544	251	PRK09544, znuC, high-affinity zinc transporter ATP	8e-06
COG4598	256	COG4598, HisP, ABC-type histidine transport system	8e-06
TIGR00972	247	TIGR00972, 3a0107s01c2, phosphate ABC transporter,	8e-06
PRK14271	276	PRK14271, PRK14271, phosphate ABC transporter ATP-	8e-06
PLN03232	1495	PLN03232, PLN03232, ABC transporter C family membe	8e-06
PRK13540	200	PRK13540, PRK13540, cytochrome c biogenesis protei	9e-06
TIGR02324	224	TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys	1e-05
TIGR03410	230	TIGR03410, urea_trans_UrtE, urea ABC transporter,	1e-05
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	1e-05
cd03236	255	cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin	1e-05
COG1117	253	COG1117, PstB, ABC-type phosphate transport system	1e-05
PRK14260	259	PRK14260, PRK14260, phosphate ABC transporter ATP-	1e-05
PLN03073	718	PLN03073, PLN03073, ABC transporter F family; Prov	1e-05
TIGR00958	711	TIGR00958, 3a01208, Conjugate Transporter-2 (CT2)	1e-05
PRK10771	232	PRK10771, thiQ, thiamine transporter ATP-binding s	1e-05
PRK14266	250	PRK14266, PRK14266, phosphate ABC transporter ATP-	1e-05
PRK10982	491	PRK10982, PRK10982, galactose/methyl galaxtoside t	2e-05
PRK10982	491	PRK10982, PRK10982, galactose/methyl galaxtoside t	2e-05
TIGR03415	382	TIGR03415, ABC_choXWV_ATP, choline ABC transporter	2e-05
TIGR01846	694	TIGR01846, type_I_sec_HlyB, type I secretion syste	2e-05
PRK14238	271	PRK14238, PRK14238, phosphate transporter ATP-bind	2e-05
PRK14255	252	PRK14255, PRK14255, phosphate ABC transporter ATP-	2e-05
CHL00131	252	CHL00131, ycf16, sulfate ABC transporter protein;	2e-05
cd03279	213	cd03279, ABC_sbcCD, ATP-binding cassette domain of	2e-05
PRK14244	251	PRK14244, PRK14244, phosphate ABC transporter ATP-	2e-05
PRK14244	251	PRK14244, PRK14244, phosphate ABC transporter ATP-	2e-05
PRK11614	237	PRK11614, livF, leucine/isoleucine/valine transpor	3e-05
PRK13657	588	PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra	3e-05
TIGR02982	220	TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi	3e-05
COG0396	251	COG0396, sufC, Cysteine desulfurase activator ATPa	3e-05
cd03248	226	cd03248, ABCC_TAP, ATP-binding cassette domain of	3e-05
PRK11147	635	PRK11147, PRK11147, ABC transporter ATPase compone	3e-05
PRK14256	252	PRK14256, PRK14256, phosphate ABC transporter ATP-	3e-05
PRK14266	250	PRK14266, PRK14266, phosphate ABC transporter ATP-	3e-05
PRK11247	257	PRK11247, ssuB, aliphatic sulfonates transport ATP	3e-05
PRK13642	277	PRK13642, cbiO, cobalt transporter ATP-binding sub	4e-05
TIGR01271	1490	TIGR01271, CFTR_protein, cystic fibrosis transmemb	4e-05
PRK14235	267	PRK14235, PRK14235, phosphate transporter ATP-bind	4e-05
PRK14270	251	PRK14270, PRK14270, phosphate ABC transporter ATP-	4e-05
PRK14265	274	PRK14265, PRK14265, phosphate ABC transporter ATP-	4e-05
PRK14265	274	PRK14265, PRK14265, phosphate ABC transporter ATP-	4e-05
PRK14258	261	PRK14258, PRK14258, phosphate ABC transporter ATP-	4e-05
PRK15079	331	PRK15079, PRK15079, oligopeptide ABC transporter A	4e-05
smart00382	148	smart00382, AAA, ATPases associated with a variety	4e-05
TIGR02211	221	TIGR02211, LolD_lipo_ex, lipoprotein releasing sys	5e-05
PRK11144	352	PRK11144, modC, molybdate transporter ATP-binding	5e-05
cd03240	204	cd03240, ABC_Rad50, ATP-binding cassette domain of	5e-05
PRK14237	267	PRK14237, PRK14237, phosphate transporter ATP-bind	5e-05
cd03254	229	cd03254, ABCC_Glucan_exporter_like, ATP-binding ca	6e-05
PRK10261	623	PRK10261, PRK10261, glutathione transporter ATP-bi	6e-05
TIGR02770	230	TIGR02770, nickel_nikD, nickel import ATP-binding	7e-05
PRK14236	272	PRK14236, PRK14236, phosphate transporter ATP-bind	7e-05
PLN03130	1622	PLN03130, PLN03130, ABC transporter C family membe	7e-05
PRK11174	588	PRK11174, PRK11174, cysteine/glutathione ABC trans	7e-05
COG1132	567	COG1132, MdlB, ABC-type multidrug transport system	8e-05
TIGR02204	576	TIGR02204, MsbA_rel, ABC transporter, permease/ATP	8e-05
PRK14258	261	PRK14258, PRK14258, phosphate ABC transporter ATP-	8e-05
PRK14253	249	PRK14253, PRK14253, phosphate ABC transporter ATP-	8e-05
PRK14253	249	PRK14253, PRK14253, phosphate ABC transporter ATP-	8e-05
PRK14236	272	PRK14236, PRK14236, phosphate transporter ATP-bind	9e-05
COG0410	237	COG0410, LivF, ABC-type branched-chain amino acid	1e-04
PRK10762	501	PRK10762, PRK10762, D-ribose transporter ATP bindi	1e-04
TIGR02203	571	TIGR02203, MsbA_lipidA, lipid A export permease/AT	1e-04
COG4138	248	COG4138, BtuD, ABC-type cobalamin transport system	1e-04
PRK14272	252	PRK14272, PRK14272, phosphate ABC transporter ATP-	1e-04
cd03223	166	cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset	1e-04
cd03223	166	cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset	1e-04
PRK14242	253	PRK14242, PRK14242, phosphate transporter ATP-bind	1e-04
PRK13545	549	PRK13545, tagH, teichoic acids export protein ATP-	2e-04
PRK13409	590	PRK13409, PRK13409, putative ATPase RIL; Provision	2e-04
PRK11432	351	PRK11432, fbpC, ferric transporter ATP-binding sub	2e-04
cd03252	237	cd03252, ABCC_Hemolysin, ATP-binding cassette doma	2e-04
COG5265	497	COG5265, ATM1, ABC-type transport system involved	2e-04
PRK10938	490	PRK10938, PRK10938, putative molybdenum transport	2e-04
PRK10938	490	PRK10938, PRK10938, putative molybdenum transport	2e-04
cd03217	200	cd03217, ABC_FeS_Assembly, ABC-type transport syst	2e-04
PRK14242	253	PRK14242, PRK14242, phosphate transporter ATP-bind	2e-04
PRK10789	569	PRK10789, PRK10789, putative multidrug transporter	2e-04
PRK14245	250	PRK14245, PRK14245, phosphate ABC transporter ATP-	2e-04
PRK14245	250	PRK14245, PRK14245, phosphate ABC transporter ATP-	2e-04
PRK10418	254	PRK10418, nikD, nickel transporter ATP-binding pro	2e-04
PRK11288	501	PRK11288, araG, L-arabinose transporter ATP-bindin	3e-04
TIGR02769	265	TIGR02769, nickel_nikE, nickel import ATP-binding	3e-04
TIGR02633	500	TIGR02633, xylG, D-xylose ABC transporter, ATP-bin	3e-04
PRK14263	261	PRK14263, PRK14263, phosphate ABC transporter ATP-	3e-04
PRK14263	261	PRK14263, PRK14263, phosphate ABC transporter ATP-	3e-04
COG4170	330	COG4170, SapD, ABC-type antimicrobial peptide tran	3e-04
COG4170	330	COG4170, SapD, ABC-type antimicrobial peptide tran	3e-04
COG4778	235	COG4778, PhnL, ABC-type phosphonate transport syst	4e-04
PRK11701	258	PRK11701, phnK, phosphonate C-P lyase system prote	4e-04
TIGR01978	243	TIGR01978, sufC, FeS assembly ATPase SufC	4e-04
PRK14268	258	PRK14268, PRK14268, phosphate ABC transporter ATP-	4e-04
PRK14239	252	PRK14239, PRK14239, phosphate transporter ATP-bind	4e-04
TIGR00958	711	TIGR00958, 3a01208, Conjugate Transporter-2 (CT2)	4e-04
PRK14249	251	PRK14249, PRK14249, phosphate ABC transporter ATP-	4e-04
PRK14267	253	PRK14267, PRK14267, phosphate ABC transporter ATP-	4e-04
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	5e-04
PRK11247	257	PRK11247, ssuB, aliphatic sulfonates transport ATP	5e-04
TIGR03796	710	TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste	5e-04
PRK14243	264	PRK14243, PRK14243, phosphate transporter ATP-bind	5e-04
PRK11300	255	PRK11300, livG, leucine/isoleucine/valine transpor	6e-04
PRK13546	264	PRK13546, PRK13546, teichoic acids export protein	6e-04
PRK10851	353	PRK10851, PRK10851, sulfate/thiosulfate transporte	6e-04
cd03249	238	cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett	6e-04
PRK10261	623	PRK10261, PRK10261, glutathione transporter ATP-bi	6e-04
PRK15093	330	PRK15093, PRK15093, antimicrobial peptide ABC tran	6e-04
PRK14259	269	PRK14259, PRK14259, phosphate ABC transporter ATP-	6e-04
PRK11831	269	PRK11831, PRK11831, putative ABC transporter ATP-b	7e-04
PRK10418	254	PRK10418, nikD, nickel transporter ATP-binding pro	9e-04
PRK11650	356	PRK11650, ugpC, glycerol-3-phosphate transporter A	9e-04
PRK13409	590	PRK13409, PRK13409, putative ATPase RIL; Provision	0.001
TIGR03719	552	TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot	0.001
PRK10938	490	PRK10938, PRK10938, putative molybdenum transport	0.001
PRK15134	529	PRK15134, PRK15134, microcin C ABC transporter ATP	0.001
PRK11124	242	PRK11124, artP, arginine transporter ATP-binding s	0.001
TIGR03005	252	TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB	0.001
cd03279	213	cd03279, ABC_sbcCD, ATP-binding cassette domain of	0.001
PRK14249	251	PRK14249, PRK14249, phosphate ABC transporter ATP-	0.001
PRK14243	264	PRK14243, PRK14243, phosphate transporter ATP-bind	0.001
PRK15093	330	PRK15093, PRK15093, antimicrobial peptide ABC tran	0.001
pfam13558	79	pfam13558, SbcCD_C, Putative exonuclease SbcCD, C	0.001
pfam13558	79	pfam13558, SbcCD_C, Putative exonuclease SbcCD, C	0.001
TIGR00957	1522	TIGR00957, MRP_assoc_pro, multi drug resistance-as	0.001
COG4181	228	COG4181, COG4181, Predicted ABC-type transport sys	0.002
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	0.002
PRK11147	635	PRK11147, PRK11147, ABC transporter ATPase compone	0.002
PRK10744	260	PRK10744, pstB, phosphate transporter ATP-binding	0.002
PRK10744	260	PRK10744, pstB, phosphate transporter ATP-binding	0.002
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	0.002
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	0.002
cd03289	275	cd03289, ABCC_CFTR2, ATP-binding cassette domain 2	0.002
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	0.002
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	0.002
PRK10771	232	PRK10771, thiQ, thiamine transporter ATP-binding s	0.003
PRK11174	588	PRK11174, PRK11174, cysteine/glutathione ABC trans	0.003
TIGR03796	710	TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste	0.003
TIGR00630	925	TIGR00630, uvra, excinuclease ABC, A subunit	0.003
TIGR00630	925	TIGR00630, uvra, excinuclease ABC, A subunit	0.003
PRK11629	233	PRK11629, lolD, lipoprotein transporter ATP-bindin	0.004
TIGR03265	353	TIGR03265, PhnT2, putative 2-aminoethylphosphonate	0.004
PRK10575	265	PRK10575, PRK10575, iron-hydroxamate transporter A	0.004
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	0.004

>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A

 Score =  321 bits (825), Expect = e-107
 Identities = 117/223 (52%), Positives = 151/223 (67%), Gaps = 3/223 (1%)

Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
           L ++ L K Y   KGTKPAV+ +S  V +GE FGLLG NGAGKTTT KMLTG ++PTSG 
Sbjct: 1   LQIRNLTKTY--KKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGT 58

Query: 403 AYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL 462
           AY+  +SIR      R  +GYCPQFDAL D LT REHL FY+R++ +P   +   V   L
Sbjct: 59  AYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLL 118

Query: 463 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER 522
               L   +++  RTLSGG KRKLS AIAL+G P ++ LDEPTSG+DP +RR +W  I  
Sbjct: 119 RVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILE 178

Query: 523 AVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 565
            V +GR +ILT+H+M+E EALC ++ IM +G+  C+GS   LK
Sbjct: 179 -VRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQELK 220

The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score =  323 bits (830), Expect = 4e-97
 Identities = 155/299 (51%), Positives = 200/299 (66%), Gaps = 7/299 (2%)

Query: 270  AVNIWAWRIIGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNLHPV--PVSLEEDDVR 327
            + N + W +IGKNL  MA  G +Y  + L I++  F    +R    P   P+  E+DDV 
Sbjct: 1866 SANPFQWDLIGKNLVAMAVEGVVYFLLTLLIQHHFF---LSRWIAEPAKEPIFDEDDDVA 1922

Query: 328  KERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTT 387
            +ER+R+  G +  D+L +  L K+Y+ +  + PAV+++  GV  GECFGLLG+NGAGKTT
Sbjct: 1923 EERQRIISGGNKTDILRLNELTKVYSGT--SSPAVDRLCVGVRPGECFGLLGVNGAGKTT 1980

Query: 388  TFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVR 447
            TFKMLTG    TSG+A V   SI  ++  V   +GYCPQFDA++D LT REHL  Y+R+R
Sbjct: 1981 TFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLR 2040

Query: 448  NVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSG 507
             VP+  +  + N S+    L  Y+DR   T SGGNKRKLSTAIAL+G PPL+ LDEPT+G
Sbjct: 2041 GVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTG 2100

Query: 508  MDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
            MDP ARR LW  I   + EGR V+LTSH+MEECEALCT+L IMV G F CLG+  HLKS
Sbjct: 2101 MDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKS 2159

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]

 Score =  246 bits (629), Expect = 2e-77
 Identities = 96/226 (42%), Positives = 137/226 (60%), Gaps = 4/226 (1%)

Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
           V+ V+ L K Y    G K A++ +SF V  GE FGLLG NGAGKTT  K+L G +KPTSG
Sbjct: 4   VIEVRNLTKKY---GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSG 60

Query: 402 NAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNES 461
              V+ + +      VR  IGY PQ  +L   LT RE+LEF++R+  +        + E 
Sbjct: 61  EILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEEL 120

Query: 462 LNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIE 521
           L  F L   ++++VRTLSGG K++LS A+ALL +P L+ LDEPTSG+DP +RR +W  + 
Sbjct: 121 LELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLR 180

Query: 522 RAVSEGRC-VILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
               EG   ++L++H +EE E LC ++ I+ +G+    G+   LK 
Sbjct: 181 ELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKE 226

Length = 293

>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A

 Score =  216 bits (553), Expect = 4e-67
 Identities = 74/152 (48%), Positives = 99/152 (65%), Gaps = 1/152 (0%)

Query: 27  IDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDR 86
                  +GYCPQFDAL D LT REHL FY+R++ +P   +   V   L    L   +++
Sbjct: 70  RKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANK 129

Query: 87  EVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILT 146
             RTLSGG KRKLS AIAL+G P ++ LDEPTSG+DP +RR +W  I   V +GR +ILT
Sbjct: 130 RARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILE-VRKGRSIILT 188

Query: 147 SHNMEECEALCTKLTIMVNGQFTCLGSATHLK 178
           +H+M+E EALC ++ IM +G+  C+GS   LK
Sbjct: 189 THSMDEAEALCDRIAIMSDGKLRCIGSPQELK 220

The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220

>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A

 Score =  212 bits (542), Expect = 4e-66
 Identities = 79/213 (37%), Positives = 114/213 (53%), Gaps = 40/213 (18%)

Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
           + V+ L K Y    G K A++ IS  V +GE +GLLG NGAGKTT  K++ G +KP SG 
Sbjct: 1   IEVRNLSKRY----GKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGE 56

Query: 403 AYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL 462
             V+   I+   + V+  IGY P+  +L + LT RE+L+                     
Sbjct: 57  IKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLK--------------------- 95

Query: 463 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER 522
                          LSGG K++L+ A ALL +P L+ LDEPTSG+DP +RR  W  +  
Sbjct: 96  ---------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRE 140

Query: 523 AVSEGRCVILTSHNMEECEALCTKLTIMVNGQF 555
              EG+ ++L+SH +EE E LC ++ I+ NG+ 
Sbjct: 141 LKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173

This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173

>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein

 Score =  204 bits (521), Expect = 2e-62
 Identities = 95/224 (42%), Positives = 130/224 (58%), Gaps = 5/224 (2%)

Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
           + V+ L K Y    G   AV  +SF V RGE FGLLG NGAGKTTT KMLT  +KPTSG 
Sbjct: 1   IEVENLVKKY----GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGR 56

Query: 403 AYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL 462
           A V  H +      VR  IG   Q  +++D LT  E+L  ++R+  VP       ++E L
Sbjct: 57  ATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELL 116

Query: 463 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER 522
           +   L   +DR V+T SGG +R+L  A +L+  P ++FLDEPT G+DP  R  +W  IE+
Sbjct: 117 DFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEK 176

Query: 523 AVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 565
              E G  ++LT+H MEE E LC ++ I+ +G+    G+   LK
Sbjct: 177 LKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEELK 220

DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit

 Score =  196 bits (500), Expect = 3e-58
 Identities = 87/210 (41%), Positives = 123/210 (58%)

Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDL 416
           G   AV+ ++F V  GE FG LG NGAGKTTT +MLT  ++PTSG A V  + +      
Sbjct: 4   GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRK 63

Query: 417 VRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVR 476
           VR  IG  PQ+ ++++ LT RE+LE   R+  +P         E L  F LG  +DR V 
Sbjct: 64  VRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVG 123

Query: 477 TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN 536
           T SGG +R+L  A +L+  P ++FLDEPT+G+DP  RR +W  I     EG  ++LT+H 
Sbjct: 124 TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHY 183

Query: 537 MEECEALCTKLTIMVNGQFTCLGSATHLKS 566
           MEE + LC ++ I+ +G+    G+   LK 
Sbjct: 184 MEEADKLCDRIAIIDHGRIIAEGTPEELKR 213

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score =  204 bits (521), Expect = 2e-56
 Identities = 91/147 (61%), Positives = 109/147 (74%)

Query: 34   IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSG 93
            +GYCPQFDA++D LT REHL  Y+R+R VP+  +  + N S+    L  Y+DR   T SG
Sbjct: 2014 MGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSG 2073

Query: 94   GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEEC 153
            GNKRKLSTAIAL+G PPL+ LDEPT+GMDP ARR LW  I   + EGR V+LTSH+MEEC
Sbjct: 2074 GNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEEC 2133

Query: 154  EALCTKLTIMVNGQFTCLGSATHLKSK 180
            EALCT+L IMV G F CLG+  HLKSK
Sbjct: 2134 EALCTRLAIMVKGAFQCLGTIQHLKSK 2160

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter

 Score =  164 bits (417), Expect = 2e-47
 Identities = 71/212 (33%), Positives = 114/212 (53%), Gaps = 7/212 (3%)

Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
           L V+ + K +    G   A++ ISF V +GE FGLLG NGAGKTTT +M+ G I P SG 
Sbjct: 1   LEVENVTKRF----GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGE 56

Query: 403 AYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL 462
                  +  +    R+ IGY P+   L  ++   + L + ++++ +        ++E L
Sbjct: 57  VLFDGKPLDIA---ARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWL 113

Query: 463 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER 522
            +  L  Y+++ V  LS GN++K+    A++ +P L+ LDEP SG+DP     L   I  
Sbjct: 114 ERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRE 173

Query: 523 AVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 554
               G+ VIL++H ME  E LC ++ ++  G+
Sbjct: 174 LARAGKTVILSTHQMELVEELCDRVLLLNKGR 205

This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210

>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component

 Score =  163 bits (414), Expect = 5e-47
 Identities = 72/215 (33%), Positives = 121/215 (56%), Gaps = 8/215 (3%)

Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
           L ++ L K Y   +    A++ +S  +G G  +GLLG NGAGKTT  ++L     P+SG 
Sbjct: 1   LQLENLTKRYGKKR----ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGT 55

Query: 403 AYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL 462
             +    +      +R  IGY PQ   +    T RE L++ + ++ +PS  +   V+E L
Sbjct: 56  IRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVL 115

Query: 463 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR-RFLWTCIE 521
               LG  + +++ +LSGG +R++  A AL+G+P ++ +DEPT+G+DP  R RF     E
Sbjct: 116 ELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSE 175

Query: 522 RAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFT 556
             + E R VIL++H +E+ E+LC ++ ++  G+  
Sbjct: 176 --LGEDRIVILSTHIVEDVESLCNQVAVLNKGKLV 208

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional

 Score =  166 bits (423), Expect = 7e-47
 Identities = 83/200 (41%), Positives = 119/200 (59%), Gaps = 2/200 (1%)

Query: 355 SKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM 414
           S G K  VN +SF V  GECFGLLG NGAGK+T  +M+ G   P +G   V+   +    
Sbjct: 50  SYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA 109

Query: 415 DLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFA-LGHYSDR 473
            L R+ IG  PQFD L+   T RE+L  + R   + +  +  ++  SL +FA L   +D 
Sbjct: 110 RLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVI-PSLLEFARLESKADA 168

Query: 474 EVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILT 533
            V  LSGG KR+L+ A AL+ +P L+ LDEPT+G+DP AR  +W  +   ++ G+ ++LT
Sbjct: 169 RVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLT 228

Query: 534 SHNMEECEALCTKLTIMVNG 553
           +H MEE E LC +L ++  G
Sbjct: 229 THFMEEAERLCDRLCVLEAG 248

Length = 340

>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter

 Score =  162 bits (412), Expect = 1e-46
 Identities = 74/211 (35%), Positives = 118/211 (55%)

Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
           +    L K + + K T  AV+ +SF V  GE  GLLG NGAGKTTT +ML G ++P +G 
Sbjct: 2   ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGF 61

Query: 403 AYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL 462
           A V    +       R  +G+      L DRLT RE+LE+++ +  +    L   + E  
Sbjct: 62  ATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELA 121

Query: 463 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER 522
           ++  +    DR V   S G ++K++ A AL+ +PP++ LDEPT+G+D  A R L   I +
Sbjct: 122 DRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQ 181

Query: 523 AVSEGRCVILTSHNMEECEALCTKLTIMVNG 553
             + G+C++ ++H M+E E LC ++ ++  G
Sbjct: 182 LRALGKCILFSTHIMQEVERLCDRVVVLHRG 212

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218

>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]

 Score =  161 bits (410), Expect = 2e-45
 Identities = 70/183 (38%), Positives = 104/183 (56%), Gaps = 6/183 (3%)

Query: 4   TTTPKRVVTLLLTTQ---KVPGSNPTID--KNLSYIGYCPQFDALNDRLTPREHLEFYSR 58
           TT  K +  LL  T     V G +   +  K    IGY PQ  +L   LT RE+LEF++R
Sbjct: 45  TTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFAR 104

Query: 59  VRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPT 118
           +  +        + E L  F L   ++++VRTLSGG K++LS A+ALL +P L+ LDEPT
Sbjct: 105 LYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPT 164

Query: 119 SGMDPGARRFLWTCIERAVSEGRC-VILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 177
           SG+DP +RR +W  +     EG   ++L++H +EE E LC ++ I+ +G+    G+   L
Sbjct: 165 SGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEEL 224

Query: 178 KSK 180
           K K
Sbjct: 225 KEK 227

Length = 293

>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional

 Score =  162 bits (411), Expect = 2e-45
 Identities = 81/199 (40%), Positives = 119/199 (59%), Gaps = 2/199 (1%)

Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDL 416
           G K  V+ +SF V RGECFGLLG NGAGKTTT +ML G   P +G+  +    +      
Sbjct: 18  GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARH 77

Query: 417 VRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFA-LGHYSDREV 475
            R  +G  PQFD L+   T RE+L  + R   + +     +V   L +FA L + +D +V
Sbjct: 78  ARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALV-PPLLEFAKLENKADAKV 136

Query: 476 RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 535
             LSGG KR+L+ A AL+ +P ++ LDEPT+G+DP AR  +W  +   ++ G+ ++LT+H
Sbjct: 137 GELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTH 196

Query: 536 NMEECEALCTKLTIMVNGQ 554
            MEE E LC +L ++  G+
Sbjct: 197 FMEEAERLCDRLCVIEEGR 215

Length = 306

>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI

 Score =  161 bits (408), Expect = 4e-45
 Identities = 85/200 (42%), Positives = 120/200 (60%), Gaps = 2/200 (1%)

Query: 355 SKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM 414
           S G K  VN +SF + RGECFGLLG NGAGK+T  +ML G I P  G   V+   +    
Sbjct: 13  SYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRA 72

Query: 415 DLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFA-LGHYSDR 473
            L R  IG  PQFD L+   T RE+L  + R   + +  +  ++  SL +FA L   +D 
Sbjct: 73  RLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVI-PSLLEFARLESKADV 131

Query: 474 EVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILT 533
            V  LSGG KR+L+ A AL+ +P L+ LDEPT+G+DP AR  +W  +   ++ G+ ++LT
Sbjct: 132 RVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLT 191

Query: 534 SHNMEECEALCTKLTIMVNG 553
           +H MEE E LC +L ++ +G
Sbjct: 192 THFMEEAERLCDRLCVLESG 211

This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303

>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score =  154 bits (390), Expect = 2e-42
 Identities = 69/198 (34%), Positives = 108/198 (54%), Gaps = 3/198 (1%)

Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDL 416
           G K AV+ ISF V  GE FGLLG NGAGKTTTF+M+ G ++PT G        +   +  
Sbjct: 13  GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEI-- 70

Query: 417 VRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVR 476
            ++ IGY P+   L  ++T  + L++ + ++ +P   +   +   L +  +     ++++
Sbjct: 71  -KNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIK 129

Query: 477 TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN 536
            LS GN++K+    A++  P L+ LDEP SG+DP     L   I     EG  +I +SH 
Sbjct: 130 ELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHR 189

Query: 537 MEECEALCTKLTIMVNGQ 554
           ME  E LC +L ++  GQ
Sbjct: 190 MEHVEELCDRLLMLKKGQ 207

Length = 300

>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

 Score =  151 bits (384), Expect = 2e-42
 Identities = 79/219 (36%), Positives = 113/219 (51%), Gaps = 3/219 (1%)

Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
           +L V  L K Y        AV  +SF    GE  GLLG NGAGKTT  +M+   + P SG
Sbjct: 1   MLEVTDLTKSY---GSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSG 57

Query: 402 NAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNES 461
              +           VR  IG       L  RLT RE+L++++R+  +    +   + E 
Sbjct: 58  KVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAEL 117

Query: 462 LNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIE 521
             +  L  Y DR V   S G K+K++ A AL+ +P ++ LDEPTSG+D   RR     I+
Sbjct: 118 SKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIK 177

Query: 522 RAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 560
           +  +EGR VI +SH M+E EALC ++ ++  G+    GS
Sbjct: 178 QLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGS 216

Length = 245

>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter

 Score =  148 bits (375), Expect = 2e-41
 Identities = 71/212 (33%), Positives = 111/212 (52%), Gaps = 9/212 (4%)

Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
           L    L K Y    G K  ++ IS  V +GE +G LG NGAGKTTT K++ G IKP SG 
Sbjct: 1   LKTNDLTKTY----GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGE 56

Query: 403 AYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL 462
                 S + +++     IG   +       LT RE+L   +R+  +        ++E L
Sbjct: 57  ITFDGKSYQKNIE-ALRRIGALIEAPGFYPNLTARENLRLLARLLGIR----KKRIDEVL 111

Query: 463 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER 522
           +   L   + ++V+  S G K++L  A+ALLGNP L+ LDEPT+G+DP   + L   I  
Sbjct: 112 DVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILS 171

Query: 523 AVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 554
              +G  V+++SH + E + +  ++ I+  G+
Sbjct: 172 LRDQGITVLISSHLLSEIQKVADRIGIINKGK 203

The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208

>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system

 Score =  147 bits (373), Expect = 4e-41
 Identities = 61/203 (30%), Positives = 107/203 (52%), Gaps = 6/203 (2%)

Query: 356 KGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SM 414
            G +PA++ IS  + +GE   ++G NG+GK+T  ++L G + PTSG   V    +   S+
Sbjct: 11  DGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSL 70

Query: 415 DLVRSYIGYCPQF-DA--LNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYS 471
             +R  +G   Q  D        T  E + F      +P   +   V E+L    L    
Sbjct: 71  KELRRKVGLVFQNPDDQFFGP--TVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLR 128

Query: 472 DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVI 531
           DR   TLSGG K++++ A  L  +P ++ LDEPT+G+DP  RR L   +++  +EG+ +I
Sbjct: 129 DRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTII 188

Query: 532 LTSHNMEECEALCTKLTIMVNGQ 554
           + +H+++    L  ++ ++ +G+
Sbjct: 189 IVTHDLDLLLELADRVIVLEDGK 211

Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score =  157 bits (398), Expect = 2e-40
 Identities = 84/222 (37%), Positives = 128/222 (57%), Gaps = 3/222 (1%)

Query: 345  VKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 404
            VK L KI+  S   +PAV++++      +    LG NGAGKTTT  +LTG + PTSG   
Sbjct: 931  VKNLVKIFEPSG--RPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVL 988

Query: 405  VMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNK 464
            V    I  ++D VR  +G CPQ + L   LT  EH+ FY++++          +   L  
Sbjct: 989  VGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLED 1048

Query: 465  FALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAV 524
              L H  + E + LSGG +RKLS AIA +G+  ++ LDEPTSG+DP +RR +W  + +  
Sbjct: 1049 TGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR 1108

Query: 525  SEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
            S GR +I+++H+M+E + L  ++ I+  G+  C G+   LK+
Sbjct: 1109 S-GRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKN 1149

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA

 Score =  147 bits (374), Expect = 3e-40
 Identities = 69/223 (30%), Positives = 121/223 (54%), Gaps = 5/223 (2%)

Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
           + V  L K+Y    GT+ A++++SF   +G   G LG NGAGK+TT K++TG + P SG+
Sbjct: 3   IRVSSLTKLY----GTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGS 58

Query: 403 AYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL 462
             V    +  +   V+  IGY P+ + L   +  RE+L+F + +  +   LL   V E +
Sbjct: 59  VQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMI 118

Query: 463 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER 522
               L     +++  LS G ++++  A AL+ +P ++ LDEPT+G+DP     +   I +
Sbjct: 119 ELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVI-K 177

Query: 523 AVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 565
            + + + +IL++H M+E EA+C ++ I+  G+         L 
Sbjct: 178 NIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELS 220

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301

>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain

 Score =  137 bits (348), Expect = 3e-38
 Identities = 56/199 (28%), Positives = 90/199 (45%), Gaps = 52/199 (26%)

Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI-RDSMD 415
           G + A++ +S  +  GE   L+G NG+GK+T  + + G +KPTSG   +    I +  ++
Sbjct: 10  GGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLE 69

Query: 416 LVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREV 475
            +R  IGY PQ                                                 
Sbjct: 70  ELRRRIGYVPQ------------------------------------------------- 80

Query: 476 RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 535
             LSGG +++++ A ALL NP L+ LDEPTSG+DP +R  L   +     EGR VI+ +H
Sbjct: 81  --LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTH 138

Query: 536 NMEECEALCTKLTIMVNGQ 554
           + E  E    ++ ++ +G+
Sbjct: 139 DPELAELAADRVIVLKDGK 157

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157

>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

 Score =  132 bits (335), Expect = 2e-35
 Identities = 65/226 (28%), Positives = 104/226 (46%), Gaps = 25/226 (11%)

Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
           ++  + L   Y    G K A+  +S  + +GE   L+G NG+GK+T  K+L G +KPTSG
Sbjct: 3   MIEAENLSFRY---PGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSG 59

Query: 402 NAYVMNHSIRDSMDL--VRSYIGYCPQFDALNDRLTPREHLEFYSRVR-NVPSVLLNT-- 456
              V          L  +R  +G   Q         P + L F   V   V   L N   
Sbjct: 60  EVLVDGLDTSSEKSLLELRQKVGLVFQN--------PDDQL-FGPTVEDEVAFGLENLGL 110

Query: 457 -------IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 509
                   V E+L    L    DR    LSGG K++++ A  L   P ++ LDEPT+G+D
Sbjct: 111 PREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLD 170

Query: 510 PGARRFLWTCIER-AVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 554
           P  RR L   +++     G+ +I+ +H++E       ++ ++ +G+
Sbjct: 171 PKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGK 216

Length = 235

>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein

 Score =  129 bits (326), Expect = 2e-34
 Identities = 66/183 (36%), Positives = 100/183 (54%), Gaps = 6/183 (3%)

Query: 2   GLTTTPKRVVTLLLTTQ---KVPGSNPTID--KNLSYIGYCPQFDALNDRLTPREHLEFY 56
           G TTT K + TLL  T     V G +   +  +    IG   Q  +++D LT  E+L  +
Sbjct: 38  GKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIH 97

Query: 57  SRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDE 116
           +R+  VP       ++E L+   L   +DR V+T SGG +R+L  A +L+  P ++FLDE
Sbjct: 98  ARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDE 157

Query: 117 PTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSAT 175
           PT G+DP  R  +W  IE+   E G  ++LT+H MEE E LC ++ I+ +G+    G+  
Sbjct: 158 PTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPE 217

Query: 176 HLK 178
            LK
Sbjct: 218 ELK 220

DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit

 Score =  130 bits (329), Expect = 6e-34
 Identities = 69/186 (37%), Positives = 101/186 (54%), Gaps = 9/186 (4%)

Query: 2   GLTTTPKRVVTLLLTTQ---KVPG----SNPTIDKNLSYIGYCPQFDALNDRLTPREHLE 54
           G TTT + + TLL  T    +V G      P   K    IG  PQ+ ++++ LT RE+LE
Sbjct: 31  GKTTTIRMLTTLLRPTSGTARVAGYDVVREP--RKVRRSIGIVPQYASVDEDLTGRENLE 88

Query: 55  FYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFL 114
              R+  +P         E L  F LG  +DR V T SGG +R+L  A +L+  P ++FL
Sbjct: 89  MMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFL 148

Query: 115 DEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSA 174
           DEPT+G+DP  RR +W  I     EG  ++LT+H MEE + LC ++ I+ +G+    G+ 
Sbjct: 149 DEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTP 208

Query: 175 THLKSK 180
             LK +
Sbjct: 209 EELKRR 214

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302

>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system

 Score =  128 bits (324), Expect = 6e-34
 Identities = 73/214 (34%), Positives = 110/214 (51%), Gaps = 6/214 (2%)

Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
           L  + L K Y    G +  VN +S  V +GE  GLLG NGAGKTTTF M+ G +KP SG 
Sbjct: 1   LRAENLSKRY----GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGK 56

Query: 403 AYVMNHSI-RDSMDL-VRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNE 460
             +    I +  M    R  IGY PQ  ++  +LT  E++     +R +        + E
Sbjct: 57  ILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEE 116

Query: 461 SLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCI 520
            L +F + H    +  +LSGG +R++  A AL  NP  + LDEP +G+DP A + +   I
Sbjct: 117 LLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKII 176

Query: 521 ERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 554
           +     G  V++T HN+ E  ++  +  I+  G+
Sbjct: 177 KILKDRGIGVLITDHNVRETLSITDRAYIIYEGK 210

The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232

>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

 Score =  127 bits (320), Expect = 1e-33
 Identities = 76/211 (36%), Positives = 114/211 (54%), Gaps = 11/211 (5%)

Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
           L  K L K +    G + AVN IS  V +   +GLLG NGAGK+T  KM+TG ++PTSG 
Sbjct: 1   LETKNLSKRF----GKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGE 56

Query: 403 AYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL 462
                H      DL +  IG   +   L + LT RE+L+ ++ +  +P    ++ ++E L
Sbjct: 57  IIFDGHPWTRK-DLHK--IGSLIESPPLYENLTARENLKVHTTLLGLP----DSRIDEVL 109

Query: 463 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER 522
           N   L +   ++ +  S G K++L  AIALL +P L+ LDEPT+G+DP   + L   I  
Sbjct: 110 NIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRS 169

Query: 523 AVSEGRCVILTSHNMEECEALCTKLTIMVNG 553
              +G  VIL+SH + E + L   + I+  G
Sbjct: 170 FPEQGITVILSSHILSEVQQLADHIGIISEG 200

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223

>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only]

 Score =  126 bits (320), Expect = 2e-33
 Identities = 75/224 (33%), Positives = 112/224 (50%), Gaps = 8/224 (3%)

Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
            LV + L K Y      +  VN +S  V  GE  GLLG NGAGKTTTF M+ G ++P SG
Sbjct: 4   TLVAENLAKSY----KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSG 59

Query: 402 NAYVMNHSI-RDSMDL-VRSYIGYCPQFDALNDRLTPREHLEFYSRVRNV-PSVLLNTI- 457
              + +  I +  M    R  IGY PQ  ++  +LT  +++     +R            
Sbjct: 60  KILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEE 119

Query: 458 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW 517
           ++  L +F + H  D +  +LSGG +R++  A AL  NP  I LDEP +G+DP A   + 
Sbjct: 120 LDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQ 179

Query: 518 TCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSA 561
             I+     G  V++T HN+ E   +C +  I+ +G+    GS 
Sbjct: 180 RIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSP 223

Length = 243

>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system

 Score =  126 bits (320), Expect = 3e-33
 Identities = 61/211 (28%), Positives = 95/211 (45%), Gaps = 22/211 (10%)

Query: 361 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI-------RDS 413
           A++ +SF V  GE  GL+G NGAGKTT F +++G ++PTSG+       I          
Sbjct: 15  ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIAR 74

Query: 414 MDLVRSYIGYCPQFDALNDRLTPREHL---------EFYSRVRNVPSVL-LNTIVNESLN 463
           + + R++     Q   L   LT  E++               R             E L 
Sbjct: 75  LGIGRTF-----QIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLE 129

Query: 464 KFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERA 523
           +  L   +DR    LS G +R+L  A AL  +P L+ LDEP +G++P     L   I   
Sbjct: 130 RVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIREL 189

Query: 524 VSEGRCVILTSHNMEECEALCTKLTIMVNGQ 554
              G  V+L  H+M+   +L  ++T++  G+
Sbjct: 190 RERGITVLLVEHDMDVVMSLADRVTVLDQGR 220

The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236

>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score =  126 bits (320), Expect = 3e-33
 Identities = 64/220 (29%), Positives = 105/220 (47%), Gaps = 29/220 (13%)

Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDL 416
           G +P +  IS  V +GE   L+G NGAGK+T  K + G +KP+SG   +    +R     
Sbjct: 15  GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRK--RR 72

Query: 417 VRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNT----------------IVNE 460
            R  IGY PQ  +++          F   V++V  VLL                   V+E
Sbjct: 73  KRLRIGYVPQKSSVD--------RSFPITVKDV--VLLGRYGKKGWFRRLNKKDKEKVDE 122

Query: 461 SLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCI 520
           +L +  +    DR++  LSGG K+++  A AL  NP L+ LDEP +G+D   ++ ++  +
Sbjct: 123 ALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLL 182

Query: 521 ERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 560
           +    EG+ V++ +H++    A   +  I +N      G 
Sbjct: 183 KELRQEGKTVLMVTHDLGLVMAYFDR-VICLNRHLIASGP 221

Length = 254

>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

 Score =  127 bits (321), Expect = 3e-33
 Identities = 65/218 (29%), Positives = 102/218 (46%), Gaps = 16/218 (7%)

Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD--SM 414
           G KP ++ +SF + +GE  G+LG NG+GK+T  K L G +KP SG   +    I      
Sbjct: 13  GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPK 72

Query: 415 DLVRSYIGYCPQFDALNDRLTPRE--------HLEFYSRVRNVPSVLLNTIVNESLNKFA 466
           +L +  + Y PQ  +    LT  E        HL  + R    PS     IV E+L    
Sbjct: 73  ELAKK-LAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGR----PSKEDEEIVEEALELLG 127

Query: 467 LGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW-TCIERAVS 525
           L H +DR V  LSGG ++++  A AL    P++ LDEPTS +D   +  +     +    
Sbjct: 128 LEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNRE 187

Query: 526 EGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATH 563
           +G  V++  H++         L ++ +G+    G+   
Sbjct: 188 KGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEE 225

Length = 258

>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

 Score =  125 bits (317), Expect = 6e-33
 Identities = 64/201 (31%), Positives = 102/201 (50%), Gaps = 5/201 (2%)

Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
           L V  L   Y    G + A++ +SF V  G    LLG NGAGK+T F +LT       G 
Sbjct: 2   LEVAGLSFRY----GARRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQ 57

Query: 403 AYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL 462
             V  H +R +     + +G   Q   L+  L+ R++L +++ +  +        + E L
Sbjct: 58  ISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARARIAELL 117

Query: 463 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER 522
            +  L   +D +VR L+GG++R++  A ALL  P L+ LDEPT G+DP +R  +   +  
Sbjct: 118 ARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRA 177

Query: 523 -AVSEGRCVILTSHNMEECEA 542
            A  +G  V+  +H ++E EA
Sbjct: 178 LARDQGLSVLWATHLVDEIEA 198

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236

>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A

 Score =  122 bits (308), Expect = 2e-32
 Identities = 56/172 (32%), Positives = 83/172 (48%), Gaps = 41/172 (23%)

Query: 2   GLTTTPKRVVTLLLTTQ---KVPGSNPTID--KNLSYIGYCPQFDALNDRLTPREHLEFY 56
           G TT  K ++ LL       KV G +   +  +    IGY P+  +L + LT RE+L+  
Sbjct: 38  GKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLK-- 95

Query: 57  SRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDE 116
                                             LSGG K++L+ A ALL +P L+ LDE
Sbjct: 96  ----------------------------------LSGGMKQRLALAQALLHDPELLILDE 121

Query: 117 PTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQF 168
           PTSG+DP +RR  W  +     EG+ ++L+SH +EE E LC ++ I+ NG+ 
Sbjct: 122 PTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173

This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173

>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA

 Score =  124 bits (313), Expect = 2e-32
 Identities = 71/235 (30%), Positives = 109/235 (46%), Gaps = 7/235 (2%)

Query: 321 LEEDDVRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGL 380
           +E  ++ K      +  + G +  +K LFK          A+  ISF + +GE  G +G 
Sbjct: 1   IEVSNLSKSYRV--YSKEPGLIGSLKSLFK---RKYREVEALKGISFTIEKGEIVGFIGP 55

Query: 381 NGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYC-PQFDALNDRLTPREH 439
           NGAGKTTT K+L+G ++PTSG   V               IG    Q   L   L   + 
Sbjct: 56  NGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDS 115

Query: 440 LEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLI 499
               + + ++P       ++E      L    D  VR LS G + +   A ALL  P ++
Sbjct: 116 FYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEIL 175

Query: 500 FLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNG 553
           FLDEPT G+D  A+  +   ++    E G  V+LTSH M++ EAL  ++ ++  G
Sbjct: 176 FLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKG 230

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236

>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters

 Score =  121 bits (306), Expect = 1e-31
 Identities = 59/210 (28%), Positives = 101/210 (48%), Gaps = 13/210 (6%)

Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDL 416
           G  P +  +SF V  GE   ++G NGAGK+T  K + G +KPTSG+  V    +      
Sbjct: 10  GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKE--- 66

Query: 417 VRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTI-------VNESLNKFALGH 469
            R  IGY PQ  ++ DR  P    +           L   +       V+E+L +  L  
Sbjct: 67  -RKRIGYVPQRRSI-DRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSE 124

Query: 470 YSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC 529
            +DR++  LSGG ++++  A AL+ +P L+ LDEP +G+DP  +  ++  +     EG  
Sbjct: 125 LADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMT 184

Query: 530 VILTSHNMEECEALCTKLTIMVNGQFTCLG 559
           +++ +H++        +  +++N      G
Sbjct: 185 ILVVTHDLGLVLEYFDR-VLLLNRTVVASG 213

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213

>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like

 Score =  119 bits (302), Expect = 4e-31
 Identities = 68/213 (31%), Positives = 102/213 (47%), Gaps = 6/213 (2%)

Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
           L +K L K Y    G+  A++ +S  V  GE   LLG +G GKTT  +++ G  +P SG 
Sbjct: 1   LELKGLSKTY----GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGE 56

Query: 403 AYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL 462
             +    +       R+ IG   Q  AL   LT  E++ F  ++R VP   +   V E L
Sbjct: 57  ILIDGRDVTGVPPERRN-IGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELL 115

Query: 463 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER 522
               L    +R    LSGG +++++ A AL   P L+ LDEP S +D   R  L   ++ 
Sbjct: 116 ELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKE 175

Query: 523 AVSE-GRCVILTSHNMEECEALCTKLTIMVNGQ 554
              E G   I  +H+ EE  AL  ++ +M  G+
Sbjct: 176 LQRELGITTIYVTHDQEEALALADRIAVMNEGR 208

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213

>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters

 Score =  119 bits (302), Expect = 6e-31
 Identities = 57/223 (25%), Positives = 102/223 (45%), Gaps = 10/223 (4%)

Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
           +L VK L   +    G+  A++ +SF + +GE  GL+G +G+GK+T  + + G +KPTSG
Sbjct: 1   LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSG 60

Query: 402 NAYVMNHSI----RDSMDLVRSYIGYCPQ--FDALNDRLTPREHLE--FYSRVRNVPSVL 453
           +       +    R    + R  I    Q    +LN R+T  E +        +      
Sbjct: 61  SIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEA 120

Query: 454 LNTIVNESLNKFALG-HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGA 512
               V   L    L     +R    LSGG +++++ A AL  NP L+  DEPTS +D   
Sbjct: 121 RKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSV 180

Query: 513 RRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQ 554
           +  +   +++   E G  ++  +H++     +  ++ +M  G+
Sbjct: 181 QAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGK 223

The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228

>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein

 Score =  117 bits (297), Expect = 2e-30
 Identities = 53/202 (26%), Positives = 91/202 (45%), Gaps = 6/202 (2%)

Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
           + +K L K Y        A+  +S  + +GE   ++G +G+GK+T   +L G  +PTSG 
Sbjct: 1   IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60

Query: 403 AYVMNHSI-----RDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTI 457
             V    I     ++     R +IG+  Q   L   LT  E++E    +  VP       
Sbjct: 61  VRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRER 120

Query: 458 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW 517
             E L +  LG   +     LSGG +++++ A AL  +P +I  DEPT  +D    + + 
Sbjct: 121 AEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVM 180

Query: 518 TCIER-AVSEGRCVILTSHNME 538
             +       G  +++ +H+ E
Sbjct: 181 ELLRELNKEAGTTIVVVTHDPE 202

This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218

>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins

 Score =  116 bits (294), Expect = 2e-30
 Identities = 54/206 (26%), Positives = 86/206 (41%), Gaps = 38/206 (18%)

Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR--DSM 414
           G +  ++ +S  +  GE  G+LG NGAGK+T  K L G +KP+SG   +    +      
Sbjct: 10  GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPK 69

Query: 415 DLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDRE 474
           +L R  I Y PQ                                  +L    L H +DR 
Sbjct: 70  ELAR-KIAYVPQ----------------------------------ALELLGLAHLADRP 94

Query: 475 VRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPG-ARRFLWTCIERAVSEGRCVILT 533
              LSGG ++++  A AL   PP++ LDEPTS +D       L      A   G+ V++ 
Sbjct: 95  FNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMV 154

Query: 534 SHNMEECEALCTKLTIMVNGQFTCLG 559
            H++        ++ ++ +G+    G
Sbjct: 155 LHDLNLAARYADRVILLKDGRIVAQG 180

ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180

>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score =  117 bits (296), Expect = 3e-29
 Identities = 70/227 (30%), Positives = 97/227 (42%), Gaps = 40/227 (17%)

Query: 360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRS 419
            AV  ISF + +GE  G LG NGAGK+TT KMLTG + PTSG   V         +    
Sbjct: 38  EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLR 97

Query: 420 YIGYCPQFD---------ALNDRLTPREHL------EFYSRVRNVPSVL-LNTIVNESLN 463
            IG                  D L   + +      EF  R+  +  +L L   +     
Sbjct: 98  SIGL--VMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKW--- 152

Query: 464 KFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGA----RRFL-WT 518
                      VR LS G + +   A ALL  P ++FLDEPT G+D  A    R FL   
Sbjct: 153 ----------PVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEY 202

Query: 519 CIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 565
             ER  +    V+LT+H  ++   LC ++ ++  GQ    G+   L+
Sbjct: 203 NEERQAT----VLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQ 245

Length = 325

>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score =  115 bits (291), Expect = 3e-29
 Identities = 64/214 (29%), Positives = 92/214 (42%), Gaps = 25/214 (11%)

Query: 361 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI-------RDS 413
           AVN +S  V  GE  GL+G NGAGKTT F ++TG  KP+SG        I          
Sbjct: 19  AVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIAR 78

Query: 414 MDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVN------------ES 461
           + + R++     Q   L   LT  E++   +  R   S LL                 E 
Sbjct: 79  LGIARTF-----QITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERAREL 133

Query: 462 LNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPG-ARRFLWTCI 520
           L    LG  +DR    LS G +R+L  A AL   P L+ LDEP +G++P           
Sbjct: 134 LEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIR 193

Query: 521 ERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 554
           E     G  ++L  H+M+    L  ++ ++  G+
Sbjct: 194 ELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGE 227

Length = 250

>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter

 Score =  111 bits (280), Expect = 6e-28
 Identities = 56/201 (27%), Positives = 85/201 (42%), Gaps = 5/201 (2%)

Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD--SM 414
           G    +  +S  V  GE   LLG NGAGKTT  K + G + P SG+       I      
Sbjct: 11  GKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPH 70

Query: 415 DLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKF-ALGHYSDR 473
           +  R+ IGY P+   +   LT  E+L   +  R          +      F  L     +
Sbjct: 71  ERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKR--KARLERVYELFPRLKERRKQ 128

Query: 474 EVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILT 533
              TLSGG ++ L+ A AL+  P L+ LDEP+ G+ P     ++  I     EG  ++L 
Sbjct: 129 LAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLV 188

Query: 534 SHNMEECEALCTKLTIMVNGQ 554
             N      +  +  ++  G+
Sbjct: 189 EQNARFALEIADRAYVLERGR 209

LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222

>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system

 Score =  110 bits (276), Expect = 1e-27
 Identities = 58/197 (29%), Positives = 88/197 (44%), Gaps = 15/197 (7%)

Query: 365 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYC 424
           +S  +  GE   L G NGAGKTT  K+L G IK +SG+  ++N     + +  +S IGY 
Sbjct: 19  LSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGS-ILLNGKPIKAKERRKS-IGYV 76

Query: 425 PQFDALNDRLTPREHLEFYS-----RVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLS 479
            Q             L   S      +        N      L    L    +R   +LS
Sbjct: 77  MQ--------DVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLS 128

Query: 480 GGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEE 539
           GG K++L+ A ALL    L+  DEPTSG+D      +   I    ++G+ VI+ +H+ E 
Sbjct: 129 GGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEF 188

Query: 540 CEALCTKLTIMVNGQFT 556
              +C ++ ++ NG   
Sbjct: 189 LAKVCDRVLLLANGAIV 205

Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205

>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional

 Score =  109 bits (274), Expect = 3e-27
 Identities = 77/226 (34%), Positives = 115/226 (50%), Gaps = 7/226 (3%)

Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
            L  K L K Y   KG +  V  +S  V  GE  GLLG NGAGKTTTF M+ G +   +G
Sbjct: 3   TLTAKNLAKAY---KGRR-VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAG 58

Query: 402 NAYVMNH--SIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVR-NVPSVLLNTIV 458
           N  + +   S+       R  IGY PQ  ++  RL+  ++L    ++R ++ +       
Sbjct: 59  NIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRA 118

Query: 459 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT 518
           NE + +F + H  D   ++LSGG +R++  A AL  NP  I LDEP +G+DP +   +  
Sbjct: 119 NELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKR 178

Query: 519 CIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
            IE     G  V++T HN+ E  A+C +  I+  G     G+ T +
Sbjct: 179 IIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEI 224

Length = 241

>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component

 Score =  108 bits (271), Expect = 7e-27
 Identities = 48/137 (35%), Positives = 83/137 (60%), Gaps = 3/137 (2%)

Query: 34  IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSG 93
           IGY PQ   +    T RE L++ + ++ +PS  +   V+E L    LG  + +++ +LSG
Sbjct: 74  IGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSG 133

Query: 94  GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR-RFLWTCIERAVSEGRCVILTSHNMEE 152
           G +R++  A AL+G+P ++ +DEPT+G+DP  R RF     E  + E R VIL++H +E+
Sbjct: 134 GMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSE--LGEDRIVILSTHIVED 191

Query: 153 CEALCTKLTIMVNGQFT 169
            E+LC ++ ++  G+  
Sbjct: 192 VESLCNQVAVLNKGKLV 208

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters

 Score =  107 bits (270), Expect = 1e-26
 Identities = 59/209 (28%), Positives = 97/209 (46%), Gaps = 5/209 (2%)

Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
           L V+ + K Y    G   A+  IS  V  GE   L+G +G GK+T  +++ G  +PTSG 
Sbjct: 1   LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60

Query: 403 AYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL 462
             V    +           GY  Q DAL   LT  +++     ++ VP         E L
Sbjct: 61  VLVDGEPVTG----PGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELL 116

Query: 463 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER 522
               L  + +     LSGG +++++ A AL  +P ++ LDEP S +D   R  L   +  
Sbjct: 117 ELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLD 176

Query: 523 AVSE-GRCVILTSHNMEECEALCTKLTIM 550
              E G+ V+L +H+++E   L  ++ ++
Sbjct: 177 IWRETGKTVLLVTHDIDEAVFLADRVVVL 205

NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

 Score =  109 bits (275), Expect = 2e-26
 Identities = 66/213 (30%), Positives = 108/213 (50%), Gaps = 10/213 (4%)

Query: 346 KRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 405
           + + K Y N    K AV+ ++  +  GE   L+G +G+GKTTT KM+   I+PTSG   +
Sbjct: 5   ENVSKRYGN----KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILI 60

Query: 406 MNHSIRDSMDLV--RSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLN 463
               I D +D V  R  IGY  Q   L   LT  E++    ++       +    +E L+
Sbjct: 61  DGEDISD-LDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLD 119

Query: 464 KFAL--GHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIE 521
              L    Y+DR    LSGG ++++  A AL  +PP++ +DEP   +DP  R+ L   I+
Sbjct: 120 LVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIK 179

Query: 522 RAVSE-GRCVILTSHNMEECEALCTKLTIMVNG 553
               E G+ ++  +H+++E   L  ++ +M  G
Sbjct: 180 ELQKELGKTIVFVTHDIDEALKLADRIAVMDAG 212

Length = 309

>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit

 Score =  110 bits (277), Expect = 2e-26
 Identities = 55/212 (25%), Positives = 99/212 (46%), Gaps = 10/212 (4%)

Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY-----VMNHSIR 411
           G K  VN     + +GE F ++GL+G+GK+TT +ML   I+PT+G  +     +M  S  
Sbjct: 4   GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPV 63

Query: 412 DSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYS 471
           +  ++ R  IG   Q  AL   +T  ++      +   P         E L    L  Y 
Sbjct: 64  ELREVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYE 123

Query: 472 DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFL---WTCIERAVSEGR 528
            R    LSGG ++++  A AL   P ++ +DE  S +DP  R  +      ++  +   +
Sbjct: 124 HRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATL--QK 181

Query: 529 CVILTSHNMEECEALCTKLTIMVNGQFTCLGS 560
            ++  +H+++E   +  ++ IM  G+   +G+
Sbjct: 182 TIVFITHDLDEAIRIGDRIVIMKAGEIVQVGT 213

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363

>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily

 Score =  105 bits (265), Expect = 3e-26
 Identities = 60/201 (29%), Positives = 88/201 (43%), Gaps = 30/201 (14%)

Query: 355 SKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM 414
           SK  K  +  +S     GE   ++G +GAGK+T    L G       +  V+ +      
Sbjct: 18  SKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK 77

Query: 415 DLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDRE 474
              R  IGY PQ D L+  LT RE L F        +  L                    
Sbjct: 78  RSFRKIIGYVPQDDILHPTLTVRETLMF--------AAKL-------------------- 109

Query: 475 VRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTS 534
            R LSGG ++++S A+ L+ NP L+FLDEPTSG+D  +   + + + R    GR +I + 
Sbjct: 110 -RGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSI 168

Query: 535 HNM-EECEALCTKLTIMVNGQ 554
           H    E   L  KL ++  G+
Sbjct: 169 HQPSSEIFELFDKLLLLSQGR 189

ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194

>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score =  106 bits (268), Expect = 4e-26
 Identities = 58/215 (26%), Positives = 97/215 (45%), Gaps = 9/215 (4%)

Query: 340 GDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT 399
             +L ++ + K +    G    +  I+  V +GE   +LG +G GK+T  +++ G  KPT
Sbjct: 1   MALLEIEGVSKSF----GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT 56

Query: 400 SGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVN 459
           SG   +    +          IGY  Q DAL   LT  +++     +R            
Sbjct: 57  SGEVLLDGRPVTG----PGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAK 112

Query: 460 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTC 519
           E L    L  + D+    LSGG +++++ A AL   P L+ LDEP   +D   R  L   
Sbjct: 113 ELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDE 172

Query: 520 IERAVSEGRC-VILTSHNMEECEALCTKLTIMVNG 553
           + R   E R  V+L +H+++E   L  ++ ++ N 
Sbjct: 173 LLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207

Length = 248

>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit

 Score =  104 bits (262), Expect = 5e-26
 Identities = 50/180 (27%), Positives = 89/180 (49%), Gaps = 8/180 (4%)

Query: 365 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV----MNHSIRDSMDLVRSY 420
           ++F   RGE   LLG NGAGK+T    L G ++P SG   +    +++S +  ++  R  
Sbjct: 11  LNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLE-RRQR 69

Query: 421 IGYCPQFDALNDRLTPR--EHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTL 478
           +G   Q D  +        + + F      +    +   V E+L         +R    L
Sbjct: 70  VGLVFQ-DPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCL 128

Query: 479 SGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 538
           SGG K++++ A A+   P ++ LDEPT+G+DP  R  +   + R  +EG  V++++H+++
Sbjct: 129 SGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190

>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

 Score =  106 bits (267), Expect = 6e-26
 Identities = 61/218 (27%), Positives = 97/218 (44%), Gaps = 27/218 (12%)

Query: 355 SKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR--D 412
            +  K  +  +S+ V  GE + ++G NGAGKTT   +LTG   P+SG+  ++       +
Sbjct: 40  RRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGE 99

Query: 413 SMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRN-VPSVLLNTI-------------- 457
           ++  +R  IG       L++R   RE       VR+ V S    +I              
Sbjct: 100 TIFELRKRIGLVSS--ELHERFRVRE------TVRDVVLSGFFASIGIYQEDLTAEDLAA 151

Query: 458 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR-RFL 516
               L      H +DR   +LS G +R++  A AL+ +P L+ LDEP  G+D  AR + L
Sbjct: 152 AQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLL 211

Query: 517 WTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNG 553
               E A S     ++  +H+ EE     T   ++  G
Sbjct: 212 NRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEG 249

Length = 257

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score =  110 bits (278), Expect = 8e-26
 Identities = 55/214 (25%), Positives = 87/214 (40%), Gaps = 26/214 (12%)

Query: 360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN-----AYVMNHSIRDSM 414
            A++ +S  V  GE   LLG NGAGK+T  K+L+G   P SG        V   S RD++
Sbjct: 22  KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDAL 81

Query: 415 DLVRSYIGYCPQFDALNDRLT----------PREHLEFYSRVRNVPSVLLNTIVNESLNK 464
                 I    Q  +L   L+          P        R        +     E L +
Sbjct: 82  AAG---IATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKA------MRRRARELLAR 132

Query: 465 FALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPG-ARRFLWTCIERA 523
             L    D  V  LS   ++ +  A AL  +  ++ LDEPT+ +      R     I R 
Sbjct: 133 LGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDL-IRRL 191

Query: 524 VSEGRCVILTSHNMEECEALCTKLTIMVNGQFTC 557
            ++G  +I  SH ++E   +  ++T++ +G+   
Sbjct: 192 KAQGVAIIYISHRLDEVFEIADRITVLRDGRVVG 225

Length = 500

>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents

 Score =  105 bits (264), Expect = 1e-25
 Identities = 56/215 (26%), Positives = 100/215 (46%), Gaps = 6/215 (2%)

Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI----RD 412
           G +  +  +   V RGE   ++G +G+GK+T  +++ G ++P SG   +    I      
Sbjct: 11  GGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEA 70

Query: 413 SMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRV-RNVPSVLLNTIVNESLNKFALGHYS 471
            +  +R  +G   Q  AL D LT  E++ F  R    +    +  IV E L    L    
Sbjct: 71  ELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAE 130

Query: 472 DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDP-GARRFLWTCIERAVSEGRCV 530
           D     LSGG K++++ A AL  +P L+  DEPT+G+DP  +              G   
Sbjct: 131 DLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTS 190

Query: 531 ILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 565
           I+ +H+++   A+  ++ ++ +G+    G+   L+
Sbjct: 191 IMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELR 225

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  105 bits (265), Expect = 1e-25
 Identities = 58/208 (27%), Positives = 104/208 (50%), Gaps = 7/208 (3%)

Query: 354 NSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI--- 410
            S G +  ++ +   V RGE   +LG +G+GK+T  +++ G ++P  G   +    I   
Sbjct: 16  KSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQL 75

Query: 411 -RDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRV-RNVPSVLLNTIVNESLNKFAL- 467
             + +  +R  +G   Q  AL   LT  E++ F  R    +P  L+  +V   L    L 
Sbjct: 76  SEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLR 135

Query: 468 GHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDP-GARRFLWTCIERAVSE 526
           G  +D     LSGG +++++ A A+  +P L+FLDEPTSG+DP  A        E   + 
Sbjct: 136 GAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDAL 195

Query: 527 GRCVILTSHNMEECEALCTKLTIMVNGQ 554
           G  VI+ +H+++    +  ++ ++ +G+
Sbjct: 196 GLTVIMVTHDLDSLLTIADRVAVLADGK 223

Length = 263

>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems

 Score =  103 bits (258), Expect = 2e-25
 Identities = 61/216 (28%), Positives = 102/216 (47%), Gaps = 42/216 (19%)

Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
           L +K + K Y    G K  +N +S  +  GE   LLG +G+GK+T  + + G  +P SG+
Sbjct: 1   LELKNVSKRY----GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGS 56

Query: 403 AYVMNHSIRDSMDLV---RSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVN 459
             +    + D  D +   R  IG   Q  AL   LT  E         N+          
Sbjct: 57  ILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLE---------NI---------- 97

Query: 460 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTC 519
                 ALG         LSGG +++++ A AL  +P ++ LDEPTS +DP  RR +   
Sbjct: 98  ------ALG---------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRAL 142

Query: 520 IERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQ 554
           ++   ++ G  V+L +H+++E   L  ++ ++ +G+
Sbjct: 143 LKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178

This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score =  109 bits (275), Expect = 2e-25
 Identities = 66/261 (25%), Positives = 113/261 (43%), Gaps = 20/261 (7%)

Query: 314 LHPVPVSL-----EEDDVRKERERVEHGADSGDVLVVKRLFKIYANSK-------GTKPA 361
            HP    L        D +  R        +  +L V+ L K Y + K       G   A
Sbjct: 247 QHPYTRGLLAAVPRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKA 306

Query: 362 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI----RDSMDLV 417
           V+ +SF +  GE  GL+G +G+GK+T  ++L G + P+SG+       +     +   L 
Sbjct: 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLR 366

Query: 418 RS-YIGYCPQFDALNDRLTPREHLEFYSRVRNVPS-VLLNTIVNESLNKFALGH-YSDRE 474
           R   + +   + +LN R+T  + L    R+    S       V E L    L   + DR 
Sbjct: 367 RRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRY 426

Query: 475 VRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILT 533
              LSGG +++++ A AL   P L+ LDEP S +D   +  +   ++    E G   +  
Sbjct: 427 PHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFI 486

Query: 534 SHNMEECEALCTKLTIMVNGQ 554
           SH++     +  ++ +M +G+
Sbjct: 487 SHDLAVVRYIADRVAVMYDGR 507

Length = 539

>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score =  103 bits (260), Expect = 3e-25
 Identities = 52/204 (25%), Positives = 93/204 (45%), Gaps = 7/204 (3%)

Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
           ++ +K + KIY        A+  ++  +  GE   ++G +G+GK+T   +L G  KPTSG
Sbjct: 1   MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSG 60

Query: 402 NAYVMNHSI-----RDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNT 456
              +    +     ++   L R  IG+  Q   L   LT  E++E    +    +     
Sbjct: 61  EVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKR 120

Query: 457 IVNESLNKFALGHYSDRE-VRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRF 515
              E L    L     ++    LSGG +++++ A AL+ NP +I  DEPT  +D    + 
Sbjct: 121 AAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKE 180

Query: 516 LWTCI-ERAVSEGRCVILTSHNME 538
           +   + E     G+ +I+ +H+ E
Sbjct: 181 VLELLRELNKERGKTIIMVTHDPE 204

Length = 226

>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional

 Score =  105 bits (264), Expect = 4e-25
 Identities = 66/213 (30%), Positives = 109/213 (51%), Gaps = 19/213 (8%)

Query: 2   GLTTTPKRVV--------TLLLTTQKVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHL 53
           G TTT + ++        ++ L  + VP            +G  PQFD L+   T RE+L
Sbjct: 45  GKTTTLRMLLGLTHPDAGSISLCGEPVPSRAR---HARQRVGVVPQFDNLDPDFTVRENL 101

Query: 54  EFYSRVRNVPSVLLNTIVNESLNKFA-LGHYSDREVRTLSGGNKRKLSTAIALLGNPPLI 112
             + R   + +     +V   L +FA L + +D +V  LSGG KR+L+ A AL+ +P ++
Sbjct: 102 LVFGRYFGLSAAAARALV-PPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVL 160

Query: 113 FLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLG 172
            LDEPT+G+DP AR  +W  +   ++ G+ ++LT+H MEE E LC +L ++  G+    G
Sbjct: 161 VLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEG 220

Query: 173 SATHLKSKSMA---LPVSGNDLGRGDPVRSELS 202
           +   L    +    + + G D      +R EL+
Sbjct: 221 APHALIESEIGCDVIEIYGPDP---VALRDELA 250

Length = 306

>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter

 Score =  103 bits (259), Expect = 4e-25
 Identities = 65/213 (30%), Positives = 108/213 (50%), Gaps = 7/213 (3%)

Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
           L V+ L K +   K     +  +S  V RG+ F +LG  G+GK+   + + G IKP SG 
Sbjct: 1   LKVENLSKDWKEFK-----LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGK 55

Query: 403 AYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL 462
             +    I + +   +  I Y PQ  AL   +T  +++ +  + R V    +   V E  
Sbjct: 56  ILLNGKDITN-LPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIA 114

Query: 463 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER 522
               + H  +R+  TLSGG +++++ A AL+ NP ++ LDEP S +D   +  L   +++
Sbjct: 115 EMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKK 174

Query: 523 AVSE-GRCVILTSHNMEECEALCTKLTIMVNGQ 554
              E G  V+  +H+ EE  AL  K+ IM+NG+
Sbjct: 175 IRKEFGVTVLHVTHDFEEAWALADKVAIMLNGK 207

Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional

 Score =  105 bits (264), Expect = 7e-25
 Identities = 68/191 (35%), Positives = 103/191 (53%), Gaps = 13/191 (6%)

Query: 34  IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFA-LGHYSDREVRTLS 92
           IG  PQFD L+   T RE+L  + R   + +  +  ++  SL +FA L   +D  V  LS
Sbjct: 116 IGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVI-PSLLEFARLESKADARVSDLS 174

Query: 93  GGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEE 152
           GG KR+L+ A AL+ +P L+ LDEPT+G+DP AR  +W  +   ++ G+ ++LT+H MEE
Sbjct: 175 GGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEE 234

Query: 153 CEALCTKLTIMVNGQFTCLGSATHLKSKSMALPVSGNDLGRGDPVRSELSRALNDGSGSG 212
            E LC +L ++  G+    G    L  + +   V   ++  GDP   ELS  +       
Sbjct: 235 AERLCDRLCVLEAGRKIAEGRPHALIDEHIGCQVI--EIYGGDP--HELSSLVKP----- 285

Query: 213 IRNSARPEVSG 223
              + R EVSG
Sbjct: 286 --YARRIEVSG 294

Length = 340

>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI

 Score =  103 bits (259), Expect = 1e-24
 Identities = 67/193 (34%), Positives = 103/193 (53%), Gaps = 13/193 (6%)

Query: 32  SYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFA-LGHYSDREVRT 90
             IG  PQFD L+   T RE+L  + R   + +  +  ++  SL +FA L   +D  V  
Sbjct: 77  VAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVI-PSLLEFARLESKADVRVAL 135

Query: 91  LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 150
           LSGG KR+L+ A AL+ +P L+ LDEPT+G+DP AR  +W  +   ++ G+ ++LT+H M
Sbjct: 136 LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFM 195

Query: 151 EECEALCTKLTIMVNGQFTCLGSATHLKSKSMALPVSGNDLGRGDPVRSELSRALNDGSG 210
           EE E LC +L ++ +G+    G    L  + +   V   ++  GDP   EL   +     
Sbjct: 196 EEAERLCDRLCVLESGRKIAEGRPHALIDEQIGCNVI--EIYGGDP--DELRELIRP--- 248

Query: 211 SGIRNSARPEVSG 223
                + R EVSG
Sbjct: 249 ----YARRIEVSG 257

This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303

>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

 Score =  105 bits (263), Expect = 1e-24
 Identities = 58/212 (27%), Positives = 102/212 (48%), Gaps = 6/212 (2%)

Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
           L +K + K +    G+   +  ++  +  GE   LLG +G GK+T  +M+ G  +PTSG 
Sbjct: 4   LELKNVRKSF----GSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGE 59

Query: 403 AYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL 462
             +    + D +   +  I    Q  AL   +T  E++ F  ++R VP   ++  V E  
Sbjct: 60  ILIDGRDVTD-LPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVA 118

Query: 463 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER 522
               L H  +R+   LSGG +++++ A AL+  P +  LDEP S +D   R  + + I++
Sbjct: 119 KLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKK 178

Query: 523 AV-SEGRCVILTSHNMEECEALCTKLTIMVNG 553
                G   I  +H+  E   L  ++ +M +G
Sbjct: 179 LHERLGTTTIYVTHDQVEAMTLADRIVVMNDG 210

Length = 338

>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter

 Score =  102 bits (256), Expect = 1e-24
 Identities = 64/226 (28%), Positives = 110/226 (48%), Gaps = 7/226 (3%)

Query: 345 VKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 404
           +K + K++ ++ G   A+  +S  V +GE FG++G +GAGK+T  + + G  +PTSG+  
Sbjct: 4   LKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVL 63

Query: 405 VMNHSI----RDSMDLVRSYIGYCPQ-FDALNDRLTPREHLEFYSRVRNVPSVLLNTIVN 459
           V    +       +   R  IG   Q F+ L+ R T  E++     +  VP   +   V 
Sbjct: 64  VDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSR-TVFENVALPLEIAGVPKAEIEERVL 122

Query: 460 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTC 519
           E L    L   +D     LSGG K+++  A AL  NP ++  DE TS +DP   + +   
Sbjct: 123 ELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILAL 182

Query: 520 IERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
           +     E G  ++L +H ME  + +C ++ +M  G+    G+   +
Sbjct: 183 LRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEV 228

MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233

>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter

 Score =  101 bits (253), Expect = 2e-24
 Identities = 43/133 (32%), Positives = 77/133 (57%)

Query: 34  IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSG 93
           +G+      L DRLT RE+LE+++ +  +    L   + E  ++  +    DR V   S 
Sbjct: 80  LGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFST 139

Query: 94  GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEEC 153
           G ++K++ A AL+ +PP++ LDEPT+G+D  A R L   I +  + G+C++ ++H M+E 
Sbjct: 140 GMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEV 199

Query: 154 EALCTKLTIMVNG 166
           E LC ++ ++  G
Sbjct: 200 ERLCDRVVVLHRG 212

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218

>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK

 Score =  101 bits (253), Expect = 2e-24
 Identities = 61/221 (27%), Positives = 108/221 (48%), Gaps = 12/221 (5%)

Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
           + ++ + K +    G   A++ ++  +  GE   LLG +G GKTTT +M+ G  +PTSG 
Sbjct: 1   VELENVTKRF----GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGR 56

Query: 403 AYVMNHSIRDSMDLV---RSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVN 459
            Y+     RD  DL    R  I    Q  AL   +T  +++ F  ++R VP   ++  V 
Sbjct: 57  IYIGG---RDVTDLPPKDRD-IAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVR 112

Query: 460 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTC 519
           E      + H  DR+ + LSGG +++++   A++  P +  +DEP S +D   R  +   
Sbjct: 113 EVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAE 172

Query: 520 IERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLG 559
           ++R     G   I  +H+  E   +  ++ +M +GQ   +G
Sbjct: 173 LKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213

>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter

 Score =  100 bits (251), Expect = 3e-24
 Identities = 40/134 (29%), Positives = 72/134 (53%)

Query: 34  IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSG 93
           IGY P+   L  ++   + L + ++++ +        ++E L +  L  Y+++ V  LS 
Sbjct: 72  IGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSK 131

Query: 94  GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEEC 153
           GN++K+    A++ +P L+ LDEP SG+DP     L   I      G+ VIL++H ME  
Sbjct: 132 GNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELV 191

Query: 154 EALCTKLTIMVNGQ 167
           E LC ++ ++  G+
Sbjct: 192 EELCDRVLLLNKGR 205

This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210

>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system

 Score =  100 bits (252), Expect = 3e-24
 Identities = 36/121 (29%), Positives = 66/121 (54%)

Query: 47  LTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALL 106
            T  E + F      +P   +   V E+L    L    DR   TLSGG K++++ A  L 
Sbjct: 91  PTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLA 150

Query: 107 GNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNG 166
            +P ++ LDEPT+G+DP  RR L   +++  +EG+ +I+ +H+++    L  ++ ++ +G
Sbjct: 151 MDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDG 210

Query: 167 Q 167
           +
Sbjct: 211 K 211

Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score =  107 bits (268), Expect = 5e-24
 Identities = 63/181 (34%), Positives = 100/181 (55%), Gaps = 7/181 (3%)

Query: 5    TTPKRVVTLLL--TTQKVPGSNPTIDKNLSYI----GYCPQFDALNDRLTPREHLEFYSR 58
            TT   ++T LL  T+  V      I+ NL  +    G CPQ + L   LT  EH+ FY++
Sbjct: 970  TTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQ 1029

Query: 59   VRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPT 118
            ++          +   L    L H  + E + LSGG +RKLS AIA +G+  ++ LDEPT
Sbjct: 1030 LKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPT 1089

Query: 119  SGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 178
            SG+DP +RR +W  + +  S GR +I+++H+M+E + L  ++ I+  G+  C G+   LK
Sbjct: 1090 SGVDPYSRRSIWDLLLKYRS-GRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLK 1148

Query: 179  S 179
            +
Sbjct: 1149 N 1149

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

 Score = 99.7 bits (249), Expect = 5e-24
 Identities = 52/173 (30%), Positives = 81/173 (46%), Gaps = 3/173 (1%)

Query: 363 NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIG 422
           + +SF +  GE   + G NGAGKTT  ++L G ++P +G  Y     I++  +     + 
Sbjct: 19  SDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALL 78

Query: 423 YCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGN 482
           Y      +   LT  E+L F+ R     S    TI  E+L +  L    D  V  LS G 
Sbjct: 79  YLGHQPGIKTELTALENLHFWQRFHG--SGNAATIW-EALAQVGLAGLEDLPVGQLSAGQ 135

Query: 483 KRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 535
           +R+++ A   L   PL  LDEP + +D      L   +    ++G  V+LT+H
Sbjct: 136 QRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTH 188

Length = 209

>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system

 Score =  101 bits (253), Expect = 6e-24
 Identities = 58/204 (28%), Positives = 100/204 (49%), Gaps = 6/204 (2%)

Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI-----R 411
           G    VN +S  V  GE F ++GL+G+GK+T  + +   I+PTSG   +    I     +
Sbjct: 35  GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRK 94

Query: 412 DSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYS 471
           +  +L R  I    Q  AL    T  E++ F   V+ VP         E+L    L  + 
Sbjct: 95  ELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWE 154

Query: 472 DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCV 530
            +    LSGG ++++  A AL  +P ++ +DE  S +DP  RR +   + R  +E  + +
Sbjct: 155 HKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTI 214

Query: 531 ILTSHNMEECEALCTKLTIMVNGQ 554
           +  +H+++E   L  ++ IM +G+
Sbjct: 215 VFITHDLDEALRLGDRIAIMKDGR 238

This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269

>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score =  100 bits (252), Expect = 6e-24
 Identities = 64/231 (27%), Positives = 109/231 (47%), Gaps = 10/231 (4%)

Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
           L V+ L  +Y   K    A+N +S  + RGE  G++G +G+GK+T  ++L G  KP+SG+
Sbjct: 4   LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGS 63

Query: 403 AYVMNHSIRDSMDLVRSY---IGYCPQ--FDALNDRLTPREHLEFYSRVRNVPSVLLNTI 457
             + +          +++   +    Q  + +LN R T    L    R   +        
Sbjct: 64  ILL-DGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQR-- 120

Query: 458 VNESLNKFALG-HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFL 516
           + E L++  L   + DR    LSGG +++++ A AL+  P L+ LDEPTS +D   +  +
Sbjct: 121 IAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQI 180

Query: 517 WTCIERAVSEGRCVIL-TSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
              +     E     L  SH++   E +C ++ +M NGQ   +G    L S
Sbjct: 181 LNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231

Length = 252

>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter

 Score =  100 bits (251), Expect = 7e-24
 Identities = 68/214 (31%), Positives = 112/214 (52%), Gaps = 6/214 (2%)

Query: 356 KGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR--DS 413
            G K AVN ++  + +GE   L+G +G+GKTTT KM+   I+PTSG  ++    IR  D 
Sbjct: 11  GGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDP 70

Query: 414 MDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFAL--GHYS 471
           ++L R  IGY  Q   L   +T  E++    ++   P   +    +E L    L    ++
Sbjct: 71  VELRRK-IGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFA 129

Query: 472 DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCV 530
           DR    LSGG ++++  A AL  +PPL+ +DEP   +DP  R  L    +R   E G+ +
Sbjct: 130 DRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTI 189

Query: 531 ILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
           +  +H+++E   L  ++ IM NG+   +G+   +
Sbjct: 190 VFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEI 223

OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score =  103 bits (259), Expect = 2e-23
 Identities = 63/251 (25%), Positives = 106/251 (42%), Gaps = 35/251 (13%)

Query: 325 DVRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAG 384
           ++               VL V+ L             V  +SF V  GE  G+ GL GAG
Sbjct: 246 ELEDLFPEPPEEGIGEPVLEVRNL--------SGGGKVRDVSFTVRAGEILGIAGLVGAG 297

Query: 385 KTTTFKMLTGAIKPTSGNAY-----VMNHSIRDSMDLVRSYIGYCPQFDALNDR------ 433
           +T   + L GA   +SG        V   S RD++      I Y P      DR      
Sbjct: 298 RTELARALFGARPASSGEILLDGKPVRIRSPRDAIKA---GIAYVP-----EDRKSEGLV 349

Query: 434 --LTPREHLEFYSRVRNVPSVLLNT-----IVNESLNKFALGHYS-DREVRTLSGGNKRK 485
             ++  E++   S  R     L++      +    + +  +   S ++ + TLSGGN++K
Sbjct: 350 LDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQK 409

Query: 486 LSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCT 545
           +  A  L  +P ++ LDEPT G+D GA+  ++  I    +EG+ +++ S  + E   L  
Sbjct: 410 VVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSD 469

Query: 546 KLTIMVNGQFT 556
           ++ +M  G+  
Sbjct: 470 RILVMREGRIV 480

Length = 500

>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C

 Score = 98.4 bits (246), Expect = 2e-23
 Identities = 67/222 (30%), Positives = 106/222 (47%), Gaps = 37/222 (16%)

Query: 352 YANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 411
           Y N +   PA++ +S  +  GE   ++G  G+GK+T  K+L G  KPTSG+  +    IR
Sbjct: 12  YPNQE--IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIR 69

Query: 412 --DSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRN-----VPSV----LLNTIVNE 460
             D  DL R  IGY PQ    +  L       FY  +R+      P      +L      
Sbjct: 70  QLDPADL-RRNIGYVPQ----DVTL-------FYGTLRDNITLGAPLADDERILRAAELA 117

Query: 461 SLNKFALGHYS--DREV----RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARR 514
            +  F   H +  D ++    R LSGG ++ ++ A ALL +PP++ LDEPTS MD  +  
Sbjct: 118 GVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEE 177

Query: 515 FLWTCIER--AVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 554
            L    ER   +   + +I+ +H     + L  ++ +M +G+
Sbjct: 178 RL---KERLRQLLGDKTLIIITHRPSLLD-LVDRIIVMDSGR 215

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220

>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 96.7 bits (242), Expect = 2e-23
 Identities = 65/218 (29%), Positives = 96/218 (44%), Gaps = 43/218 (19%)

Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
           VL V+ L          K AV  +SF V  GE  G+ GL G G+T   + L G   P SG
Sbjct: 4   VLEVRGL--------SVKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASG 55

Query: 402 NAYVMNHSI--RDSMDLVRSYIGYCPQFDALNDRLTPRE--HLEFYSRVRNVPSVLLNTI 457
              +    +  R   D +R+ I Y P+     DR   RE   L+         SV  N  
Sbjct: 56  EITLDGKPVTRRSPRDAIRAGIAYVPE-----DRK--REGLVLDL--------SVAENIA 100

Query: 458 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW 517
           ++                  LSGGN++K+  A  L  +P ++ LDEPT G+D GA+  ++
Sbjct: 101 LS----------------SLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIY 144

Query: 518 TCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQF 555
             I      G+ V+L S  ++E   LC ++ +M  G+ 
Sbjct: 145 RLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182

This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182

>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 98.9 bits (247), Expect = 3e-23
 Identities = 56/237 (23%), Positives = 103/237 (43%), Gaps = 16/237 (6%)

Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
           ++ VK L K Y        A+  ++  + +GE   ++G +GAGK+T  + L G + PTSG
Sbjct: 3   MIEVKNLSKTYPGGH---QALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSG 59

Query: 402 NAYVMNHSIR----DSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVR-NVPSVLLNT 456
                   I       +  +R  IG   Q   L  RL+  E++        +    L   
Sbjct: 60  EILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGL 119

Query: 457 IVNE-------SLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 509
              E       +L +  +   + +   TLSGG +++++ A AL+  P +I  DEP + +D
Sbjct: 120 FSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLD 179

Query: 510 P-GARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 565
           P  A++ +    +    +G  VI+  H ++  +    ++  +  G+    G A+ L 
Sbjct: 180 PESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELT 236

Length = 258

>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters

 Score = 96.3 bits (241), Expect = 3e-23
 Identities = 48/183 (26%), Positives = 84/183 (45%), Gaps = 40/183 (21%)

Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMD 415
             KP +  +S  +  GE   ++G +G+GK+T  K+L     PTSG   +    +RD  ++
Sbjct: 13  RPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLE 72

Query: 416 LVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREV 475
            +R  I Y PQ                          L +  + E++             
Sbjct: 73  SLRKNIAYVPQD-----------------------PFLFSGTIRENI------------- 96

Query: 476 RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 535
             LSGG +++++ A ALL +PP++ LDE TS +DP     +   + RA+++G+ VI+ +H
Sbjct: 97  --LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEAL-RALAKGKTVIVIAH 153

Query: 536 NME 538
            + 
Sbjct: 154 RLS 156

The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171

>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

 Score =  100 bits (250), Expect = 5e-23
 Identities = 61/227 (26%), Positives = 115/227 (50%), Gaps = 8/227 (3%)

Query: 345 VKRLFKIYANSKGTKP-AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA 403
           ++ + K +  +      A++ +S  + +GE FG++G +GAGK+T  +++    +PTSG+ 
Sbjct: 4   LENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSV 63

Query: 404 YVMNHSI----RDSMDLVRSYIGYCPQ-FDALNDRLTPREHLEFYSRVRNVPSVLLNTIV 458
           +V    +       +  +R  IG   Q F+ L+ R T  E++ F   +  VP   +   V
Sbjct: 64  FVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSR-TVFENVAFPLELAGVPKAEIKQRV 122

Query: 459 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT 518
            E L    L   +DR    LSGG K++++ A AL  NP ++  DE TS +DP   + +  
Sbjct: 123 AELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILE 182

Query: 519 CIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
            ++    E G  ++L +H ME  + +C ++ ++  G+    G+ + +
Sbjct: 183 LLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEV 229

Length = 339

>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 98.5 bits (246), Expect = 6e-23
 Identities = 64/213 (30%), Positives = 107/213 (50%), Gaps = 15/213 (7%)

Query: 349 FKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 408
           F  Y NS+    A+  +SF +  GE   +LG NG+GK+T  K+LTG +KP SG   +   
Sbjct: 15  FS-YPNSE--NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGI 71

Query: 409 SI-RDSMDLVRSYIGYC---P--QFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL 462
           +I ++++  +R  IG     P  QF       T  + + F    + VP   +  I+++  
Sbjct: 72  TISKENLKEIRKKIGIIFQNPDNQFIG----ATVEDDIAFGLENKKVPPKKMKDIIDDLA 127

Query: 463 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER 522
            K  +  Y D+E + LSGG K++++ A  L  NP +I  DE TS +DP  +R +   +  
Sbjct: 128 KKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVD 187

Query: 523 AVSEG-RCVILTSHNMEECEALCTKLTIMVNGQ 554
                 + +I  +H+M+E   L  K+ +   G+
Sbjct: 188 LRKTRKKTLISITHDMDEA-ILADKVIVFSEGK 219

Length = 271

>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system

 Score = 96.8 bits (242), Expect = 7e-23
 Identities = 66/235 (28%), Positives = 106/235 (45%), Gaps = 23/235 (9%)

Query: 324 DDVRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGA 383
           ++V K     + G+ S    + K          G   A+  +SF V RGE  GL+G NGA
Sbjct: 4   ENVSKSYPTYKGGSSS----LKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGA 59

Query: 384 GKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFY 443
           GK+T  ++L G   P SG   V    +   + L     G        N  LT RE++   
Sbjct: 60  GKSTLLRLLAGIYPPDSGTVTVRG-RVSSLLGL-----GG-----GFNPELTGRENIYLN 108

Query: 444 SRVRNVPSVLLNTIVNESLNKFA-LGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLD 502
            R+  +    ++  ++E +  F+ LG + D  V+T S G K +L+ AIA    P ++ +D
Sbjct: 109 GRLLGLSRKEIDEKIDEIIE-FSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLID 167

Query: 503 EPTSGMDPGARRFLWTCIER---AVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 554
           E  +  D     F   C  R    + +G+ VIL SH+    + LC +  ++  G+
Sbjct: 168 EVLAVGD---AAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGK 219

The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224

>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 99.3 bits (248), Expect = 1e-22
 Identities = 59/213 (27%), Positives = 99/213 (46%), Gaps = 11/213 (5%)

Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDL 416
           G   A++ IS  +  GE   LLG +GAGK+T  +++ G   P +G   +    + D  +L
Sbjct: 13  GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNL 72

Query: 417 -VRSY-IGYCPQFDALNDRLTPREHLEFYSRVRNV--PSVLLNTIVNESLNKFALGHYSD 472
            VR   +G+  Q  AL   +T  +++ F  +VR        +   V E L    L   +D
Sbjct: 73  AVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLAD 132

Query: 473 REVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR----RFLWTCIERAVSEGR 528
           R    LSGG +++++ A AL   P ++ LDEP   +D   R    R+L    +R    G 
Sbjct: 133 RYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDR---LGV 189

Query: 529 CVILTSHNMEECEALCTKLTIMVNGQFTCLGSA 561
             +  +H+ EE   L  ++ ++  G+   +G  
Sbjct: 190 TTVFVTHDQEEALELADRVVVLNQGRIEQVGPP 222

Length = 345

>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD

 Score = 96.9 bits (242), Expect = 1e-22
 Identities = 58/216 (26%), Positives = 100/216 (46%), Gaps = 11/216 (5%)

Query: 361 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI--RDSMDLVR 418
           A+N +S  V  GE   ++G NGAGKTT   ++TG  +P  G+       +       + R
Sbjct: 17  ALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIAR 76

Query: 419 SYIGYCPQFDALNDRLTPREHLEF-YSRVRNVPSVLLNTI-------VNESLNKFALGHY 470
           + IG   Q   + + LT  E+LE    R ++V + L   +       + E L    L   
Sbjct: 77  AGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADE 136

Query: 471 SDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCV 530
           +DR    LS G K+ L   + L+ +P L+ LDEP +GM           + ++++    V
Sbjct: 137 ADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELL-KSLAGKHSV 195

Query: 531 ILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
           ++  H+ME   ++  K+T++  G     GS   +++
Sbjct: 196 VVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242

>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2

 Score =  101 bits (253), Expect = 1e-22
 Identities = 77/254 (30%), Positives = 119/254 (46%), Gaps = 28/254 (11%)

Query: 325 DVRKERERVEHGADSGDVLVVKRLFKIYAN-SKGTKPAVNQISFGVGRGECFGLLGLNGA 383
           +V KE E VE G     ++ V+ + K Y +  +G   AV+ +S  V  GE FG++G +GA
Sbjct: 266 EVEKECE-VEVGEP---IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGA 321

Query: 384 GKTTTFKMLTGAIKPTSGNAYV--------MNHSIRDSMDLVRSYIGYCPQFDALN---- 431
           GKTT  K++ G ++PTSG   V        M     D     + YIG   Q   L     
Sbjct: 322 GKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRT 381

Query: 432 --DRLTPREHLEF---YSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKL 486
             D LT    LE     +R++ V   L     +E   +  L  Y D     LS G + ++
Sbjct: 382 VLDNLTEAIGLELPDELARMKAV-ITLKMVGFDEEKAEEILDKYPD----ELSEGERHRV 436

Query: 487 STAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCT 545
           + A  L+  P ++ LDEPT  MDP  +  +   I +A  E  +  I+ SH+M+    +C 
Sbjct: 437 ALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCD 496

Query: 546 KLTIMVNGQFTCLG 559
           +  +M +G+   +G
Sbjct: 497 RAALMRDGKIVKIG 510

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520

>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family

 Score =  101 bits (255), Expect = 1e-22
 Identities = 65/222 (29%), Positives = 105/222 (47%), Gaps = 37/222 (16%)

Query: 352 YANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 411
           Y   +   PA++ +S  +  GE   ++G  G+GK+T  K+L G  +PT G+  +    IR
Sbjct: 473 YPGQE--TPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIR 530

Query: 412 --DSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRN-----VPSV----LLNTIVNE 460
             D  DL R  IGY PQ    + RL       FY  +R+      P      +L      
Sbjct: 531 QIDPADL-RRNIGYVPQ----DPRL-------FYGTLRDNIALGAPYADDEEILRAAELA 578

Query: 461 SLNKFALGHYS--DREV----RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARR 514
            + +F   H    D ++    R+LSGG ++ ++ A ALL +PP++ LDEPTS MD  +  
Sbjct: 579 GVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEE 638

Query: 515 FLWTCIER--AVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 554
                 +R      G+ ++L +H     + L  ++ +M NG+
Sbjct: 639 ---RFKDRLKRWLAGKTLVLVTHRTSLLD-LVDRIIVMDNGR 676

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694

>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

 Score = 96.5 bits (241), Expect = 2e-22
 Identities = 65/251 (25%), Positives = 114/251 (45%), Gaps = 31/251 (12%)

Query: 319 VSLEEDDVRKERERVEHGADSGDVLVVKRLFKIY--ANSKGTKPAVNQISFGVGRGECFG 376
           V ++  +V K+       + S    + KRL  +           A+  ISF + +GE  G
Sbjct: 2   VVIKVSNVSKKFRIYHEKSYS----LKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVG 57

Query: 377 LLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFD---ALNDR 433
           ++G NGAGK+T  K++ G  KPTSG   V       +  +        P  +     +  
Sbjct: 58  IIGHNGAGKSTLLKLIAGIYKPTSGKVKV-------TGKVA-------PLIELGAGFDPE 103

Query: 434 LTPREHLEFYSRVRNVPSVLLNTIVNESLNKFA-LGHYSDREVRTLSGGNKRKLSTAIAL 492
           LT RE++     +  +    ++  V+E + +FA LG + D+ V+T S G   +L+ ++A 
Sbjct: 104 LTGRENIYLRGLILGLTRKEIDEKVDEII-EFAELGDFIDQPVKTYSSGMYARLAFSVAT 162

Query: 493 LGNPPLIFLDEPTSGMDPGARRFLWTCIERA---VSEGRCVILTSHNMEECEALCTKLTI 549
              P ++ LDE  +  D     F   C+ER    V + + ++L SH++   +  C +   
Sbjct: 163 HVEPDILLLDEVLAVGDA---AFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIW 219

Query: 550 MVNGQFTCLGS 560
           + +GQ    GS
Sbjct: 220 LEHGQIRMEGS 230

Length = 249

>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system

 Score = 94.7 bits (236), Expect = 3e-22
 Identities = 60/191 (31%), Positives = 93/191 (48%), Gaps = 12/191 (6%)

Query: 372 GECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI----RDSMDL--VRSYIGYCP 425
            E  G+ G +GAGK+T  + + G  KP  G   + N ++    R  ++L   +  IG   
Sbjct: 23  EEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVL-NGTVLFDSRKKINLPPQQRKIGLVF 81

Query: 426 QFDALNDRLTPREHLEF-YSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKR 484
           Q  AL   L  RE+L F   R RN    +    V+E L+   L H  +R    LSGG K+
Sbjct: 82  QQYALFPHLNVRENLAFGLKRKRNREDRIS---VDELLDLLGLDHLLNRYPAQLSGGEKQ 138

Query: 485 KLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEAL 543
           +++ A AL   P L+ LDEP S +D   R  L   +++        VI  +H++ E E L
Sbjct: 139 RVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYL 198

Query: 544 CTKLTIMVNGQ 554
             ++ +M +G+
Sbjct: 199 ADRIVVMEDGR 209

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214

>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

 Score = 95.2 bits (237), Expect = 4e-22
 Identities = 52/147 (35%), Positives = 82/147 (55%)

Query: 34  IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSG 93
           IG       L  RLT RE+L++++R+  +    +   + E   +  L  Y DR V   S 
Sbjct: 77  IGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFST 136

Query: 94  GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEEC 153
           G K+K++ A AL+ +P ++ LDEPTSG+D   RR     I++  +EGR VI +SH M+E 
Sbjct: 137 GMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEV 196

Query: 154 EALCTKLTIMVNGQFTCLGSATHLKSK 180
           EALC ++ ++  G+    GS   L ++
Sbjct: 197 EALCDRVIVLHKGEVVLEGSIEALDAR 223

Length = 245

>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 96.4 bits (240), Expect = 4e-22
 Identities = 57/210 (27%), Positives = 103/210 (49%), Gaps = 7/210 (3%)

Query: 356 KGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI-RDSM 414
            G+K A+N I+F   R     ++G NGAGK+T F+   G +KPTSG+  +    I ++++
Sbjct: 14  SGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENI 73

Query: 415 DLVRSYIGYCPQFDALNDRL---TPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYS 471
             VR ++G    F   +D++   T  + + F      +    +   V+ +L+   L    
Sbjct: 74  REVRKFVGLV--FQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELR 131

Query: 472 DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCV 530
           DR    LSGG K++++ A  +   P ++ LDEPT+G+DP   + L   +       G  V
Sbjct: 132 DRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTV 191

Query: 531 ILTSHNMEECEALCTKLTIMVNGQFTCLGS 560
           I ++H ++    +   + +M  G+    G+
Sbjct: 192 IFSTHQLDLVPEMADYIYVMDKGRIVAYGT 221

Length = 277

>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 96.3 bits (240), Expect = 5e-22
 Identities = 50/171 (29%), Positives = 84/171 (49%), Gaps = 8/171 (4%)

Query: 2   GLTTTPKRVVTLLLTTQKVPGSNPTIDKNLSY-----IGYCPQFDALNDRLTPREHLEFY 56
           G TTT + ++ LL  T+   G        LS      IGY P+   L  ++T  + L++ 
Sbjct: 40  GKTTTFRMILGLLEPTE---GEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQLKYL 96

Query: 57  SRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDE 116
           + ++ +P   +   +   L +  +     ++++ LS GN++K+    A++  P L+ LDE
Sbjct: 97  AELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDE 156

Query: 117 PTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 167
           P SG+DP     L   I     EG  +I +SH ME  E LC +L ++  GQ
Sbjct: 157 PFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQ 207

Length = 300

>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA

 Score = 93.6 bits (233), Expect = 6e-22
 Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 4/181 (2%)

Query: 355 SKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM 414
           S+G +     +SF +  GE   + G NG GKTT  ++L G ++P SG       ++ +  
Sbjct: 9   SRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR 68

Query: 415 DLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDRE 474
           D     I Y      L   L+  E+L F++ +           + ++L    L  + D  
Sbjct: 69  DEPHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQ----RTIEDALAAVGLTGFEDLP 124

Query: 475 VRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTS 534
              LS G +R+L+ A   L   PL  LDEPT+ +D      L   +   ++ G  V+LT+
Sbjct: 125 AAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTT 184

Query: 535 H 535
           H
Sbjct: 185 H 185

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 98.9 bits (247), Expect = 7e-22
 Identities = 58/195 (29%), Positives = 89/195 (45%), Gaps = 25/195 (12%)

Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDL 416
           G +  +  +SF + RG+   ++G NGAGK+T  K+L G + P SG    +  +++     
Sbjct: 333 GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSG-TVKVGETVK----- 386

Query: 417 VRSYIGYCPQ-FDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFAL-GHYSDRE 474
               IGY  Q  D L+   T  E L                 V   L +F   G   ++ 
Sbjct: 387 ----IGYFDQHRDELDPDKTVLEEL------SEGFPDGDEQEVRAYLGRFGFTGEDQEKP 436

Query: 475 VRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE--GRCVIL 532
           V  LSGG K +L  A  LL  P L+ LDEPT+ +D  +   L    E A+ +  G  V+L
Sbjct: 437 VGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEAL----EEALLDFEG-TVLL 491

Query: 533 TSHNMEECEALCTKL 547
            SH+    + + T++
Sbjct: 492 VSHDRYFLDRVATRI 506

Length = 530

>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain

 Score = 91.5 bits (228), Expect = 1e-21
 Identities = 31/77 (40%), Positives = 49/77 (63%)

Query: 91  LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 150
           LSGG +++++ A ALL NP L+ LDEPTSG+DP +R  L   +     EGR VI+ +H+ 
Sbjct: 81  LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDP 140

Query: 151 EECEALCTKLTIMVNGQ 167
           E  E    ++ ++ +G+
Sbjct: 141 ELAELAADRVIVLKDGK 157

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157

>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein

 Score = 93.3 bits (232), Expect = 1e-21
 Identities = 57/211 (27%), Positives = 101/211 (47%), Gaps = 6/211 (2%)

Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS--M 414
           G+  A++ ++  V  G    LLG +G+GK+T  +++ G  +P SG   +     +D+  +
Sbjct: 11  GSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNG---QDATRV 67

Query: 415 DLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDRE 474
                 IG+  Q  AL   LT R+++ F   +R  P   +   V E L    L    DR 
Sbjct: 68  HARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRY 127

Query: 475 VRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCV-ILT 533
              LSGG +++++ A AL   P ++ LDEP   +D   R+ L + + +   E     +  
Sbjct: 128 PNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFV 187

Query: 534 SHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
           +H+ EE   +  ++ +M NG+   +GS   +
Sbjct: 188 THDQEEAMEVADRIVVMSNGKIEQIGSPDEV 218

[Transport and binding proteins, Anions]. Length = 237

>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit

 Score = 93.0 bits (231), Expect = 2e-21
 Identities = 59/205 (28%), Positives = 93/205 (45%), Gaps = 11/205 (5%)

Query: 367 FGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQ 426
               +GE  GLLG NGAGKTT  + + G I P  G   V   S          +IGY PQ
Sbjct: 1   LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKG----WRHIGYVPQ 56

Query: 427 FDALN-DRLTPREHLEFYSRVRNV-----PSVLLNTIVNESLNKFALGHYSDREVRTLSG 480
                 D      H     R  ++     P V     V ++L +  L   +DR V  LSG
Sbjct: 57  RHEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSG 116

Query: 481 GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEEC 540
           G ++++  A AL   P ++ LDEP +G+D   +  L          G  +++T+H++ + 
Sbjct: 117 GQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQA 176

Query: 541 EALCTKLTIMVNGQFTCLGSATHLK 565
            A C ++ +++NG+    G+   L+
Sbjct: 177 MATCDRV-VLLNGRVIADGTPQQLQ 200

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223

>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

 Score = 93.6 bits (233), Expect = 2e-21
 Identities = 59/217 (27%), Positives = 98/217 (45%), Gaps = 12/217 (5%)

Query: 361 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH---SIRDSMDLV 417
           A+N +SF V  GE   L+G NGAGKTT   ++TG  +P  G          +      + 
Sbjct: 20  ALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIA 79

Query: 418 RSYIGYCPQFDALNDRLTPREHLEFYSRV-RNVPSVLLNTI-------VNESLNKFALGH 469
           R+ IG   Q   + + LT RE+LE      ++V + L   +       ++E L    LG 
Sbjct: 80  RAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGD 139

Query: 470 YSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC 529
             DR    LS G K+ L   + L  +P L+ LDEP +GM           + ++++    
Sbjct: 140 ERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELL-KSLAGKHS 198

Query: 530 VILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
           +++  H+M     +  K+T++  G     GS   +++
Sbjct: 199 ILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQN 235

Length = 249

>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily

 Score = 92.3 bits (230), Expect = 3e-21
 Identities = 57/190 (30%), Positives = 86/190 (45%), Gaps = 11/190 (5%)

Query: 354 NSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI---KPTSGNAYVMNHSI 410
           N       +N +S  V  G+   +LG +G+GKTT    ++G +     TSG         
Sbjct: 15  NWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPR 74

Query: 411 RDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTI-----VNESLNKF 465
               D  +  + Y  Q D L   LT RE L + + +R  P    + I      +  L   
Sbjct: 75  --KPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRL-PRKSSDAIRKKRVEDVLLRDL 131

Query: 466 ALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS 525
           AL       V+ +SGG +R++S A+ LL +P ++ LDEPTSG+D      L + + +   
Sbjct: 132 ALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR 191

Query: 526 EGRCVILTSH 535
             R VILT H
Sbjct: 192 RNRIVILTIH 201

The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226

>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 95.1 bits (237), Expect = 5e-21
 Identities = 56/200 (28%), Positives = 97/200 (48%), Gaps = 6/200 (3%)

Query: 361 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI-----RDSMD 415
            VN  S  V  GE F ++GL+G+GK+T  ++L   I+PT G   V    I      +  +
Sbjct: 43  GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRE 102

Query: 416 LVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREV 475
           L R  I    Q  AL    T  E++ F   V+ VP         E+L    L  Y+D+  
Sbjct: 103 LRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP 162

Query: 476 RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTS 534
             LSGG ++++  A AL  +P ++ +DE  S +DP  R  +   +    ++  + ++  +
Sbjct: 163 NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFIT 222

Query: 535 HNMEECEALCTKLTIMVNGQ 554
           H+++E   +  ++ IM +G+
Sbjct: 223 HDLDEALRIGDRIAIMKDGE 242

Length = 386

>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group

 Score = 91.1 bits (227), Expect = 5e-21
 Identities = 50/199 (25%), Positives = 96/199 (48%), Gaps = 9/199 (4%)

Query: 345 VKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 404
           +K + K +    G K  ++ ++  + +G+ + ++G +G+GK+T   ++    K  SG  Y
Sbjct: 1   LKNISKKF----GDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVY 56

Query: 405 VMNHSI-----RDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVN 459
           +          + +    R  +GY  Q  AL +  T  E+L+   + + +          
Sbjct: 57  LNGQETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKK 116

Query: 460 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTC 519
           E+L K  L     +++  LSGG +++++ A A+L  PPLI  DEPT  +DP  R  +   
Sbjct: 117 EALEKVGLNLKLKQKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDL 176

Query: 520 IERAVSEGRCVILTSHNME 538
           +     EG+ +I+ +H+ E
Sbjct: 177 LLELNDEGKTIIIVTHDPE 195

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206

>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein

 Score = 90.6 bits (225), Expect = 6e-21
 Identities = 48/181 (26%), Positives = 80/181 (44%), Gaps = 6/181 (3%)

Query: 355 SKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM 414
            +  +   + +SF +  GE   + G NG+GKTT  ++L G   P +G   +    +    
Sbjct: 9   ERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR 68

Query: 415 DLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDRE 474
           D +   + Y      +   L+  E+L F+    +   V       E+L +  L  + DR 
Sbjct: 69  DSIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVE------EALARVGLNGFEDRP 122

Query: 475 VRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTS 534
           V  LS G +R+++ A  LL   PL  LDEPT+ +D          +    + G  V+LT+
Sbjct: 123 VAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTT 182

Query: 535 H 535
           H
Sbjct: 183 H 183

CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201

>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter

 Score = 88.1 bits (219), Expect = 6e-21
 Identities = 45/124 (36%), Positives = 64/124 (51%), Gaps = 8/124 (6%)

Query: 386 TTTFKMLTGAIKPTSGNAYVMNHSIRD--SMDLVRSYIGYCPQFDALNDRLTPREHLEFY 443
           +T  K++TG ++PTSG   +         S  L+R  IG   Q   L   LT RE+L F 
Sbjct: 1   STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFF- 59

Query: 444 SRVRNVPSVLLNTIVNESLNKFALGHYSDRE-VRTLSGGNKRKLSTAIALLGNPPLIFLD 502
                +     +    E+L +  L  + DRE V TLSGG K++++ A ALL  P L+ LD
Sbjct: 60  ----GLRDKEADARAEEALERVGLPDFLDREPVGTLSGGQKQRVAIARALLKKPKLLLLD 115

Query: 503 EPTS 506
           EPT+
Sbjct: 116 EPTA 119

ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119

>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter

 Score = 90.7 bits (226), Expect = 7e-21
 Identities = 49/170 (28%), Positives = 84/170 (49%), Gaps = 8/170 (4%)

Query: 2   GLTTTPKRVVTLLLTTQ---KVPGSNPTIDKN-LSYIGYCPQFDALNDRLTPREHLEFYS 57
           G TTT K ++ L+          G +   +   L  IG   +       LT RE+L   +
Sbjct: 38  GKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLA 97

Query: 58  RVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEP 117
           R+  +        ++E L+   L   + ++V+  S G K++L  A+ALLGNP L+ LDEP
Sbjct: 98  RLLGIR----KKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEP 153

Query: 118 TSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 167
           T+G+DP   + L   I     +G  V+++SH + E + +  ++ I+  G+
Sbjct: 154 TNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGK 203

The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208

>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein

 Score = 91.6 bits (228), Expect = 8e-21
 Identities = 57/231 (24%), Positives = 103/231 (44%), Gaps = 26/231 (11%)

Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
           +L V+ L K+Y N K    A+  I+  +  GE   ++G +GAGK+T  + +   ++P+SG
Sbjct: 1   MLEVENLSKVYPNGK---QALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSG 57

Query: 402 NAYVMNHSIRD----SMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSV--LLN 455
           +  +    I       +  +R  IG   Q   L +RLT  E++  + R+   P+   LL 
Sbjct: 58  SILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENV-LHGRLGYKPTWRSLLG 116

Query: 456 T-------IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGM 508
                       +L +  L   + +    LSGG +++++ A AL   P LI  DEP + +
Sbjct: 117 RFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASL 176

Query: 509 DPGARR-----FLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 554
           DP   +           E    +G  VI+  H ++  +    ++  +  G+
Sbjct: 177 DPKTSKQVMDYLKRINKE----DGITVIINLHQVDLAKKYADRIVGLKAGE 223

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243

>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional

 Score = 89.9 bits (224), Expect = 1e-20
 Identities = 50/180 (27%), Positives = 80/180 (44%), Gaps = 6/180 (3%)

Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDL 416
           G +   + +SF +  GE   L G NG+GKTT  +++ G + P +G   +    I D    
Sbjct: 13  GGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPD-- 70

Query: 417 VRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVR 476
           V     Y    +A+   LT  E+LEF++             +  +L    L   +     
Sbjct: 71  VAEACHYLGHRNAMKPALTVAENLEFWAAFLGGE----ELDIAAALEAVGLAPLAHLPFG 126

Query: 477 TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN 536
            LS G KR+++ A  L+ N P+  LDEPT+ +D  A       I   +++G  VI  +H 
Sbjct: 127 YLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHI 186

Length = 207

>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter

 Score = 90.4 bits (225), Expect = 1e-20
 Identities = 60/219 (27%), Positives = 111/219 (50%), Gaps = 6/219 (2%)

Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
           + ++ + K Y    G   A++ +S  +  GE F LLG +G GKTT  +++ G   PTSG 
Sbjct: 1   IELENVSKFY----GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGE 56

Query: 403 AYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL 462
             +    I + +   +  +    Q  AL   LT  E++ F  R++ +P   +   V E+L
Sbjct: 57  ILLDGKDITN-LPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEAL 115

Query: 463 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER 522
           +   L  Y++R+   LSGG +++++ A AL+  P ++ LDEP   +D   R+ +   ++R
Sbjct: 116 DLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKR 175

Query: 523 AVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 560
              E G   +  +H+ EE   +  ++ +M  G+   +G+
Sbjct: 176 LQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGT 214

PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 93.9 bits (234), Expect = 3e-20
 Identities = 62/230 (26%), Positives = 98/230 (42%), Gaps = 38/230 (16%)

Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
           ++ ++ L   Y    G +P +  +S  +  GE  GL+G NGAGK+T  K+L G ++P SG
Sbjct: 3   MITLENLSLAY----GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSG 58

Query: 402 N---------AYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSV 452
                      Y+      D    V  Y+     F  L + L   E    Y+ + +    
Sbjct: 59  EVTRPKGLRVGYLSQEPPLDPEKTVLDYV--IEGFGELRELLAELEEA--YALLADPDDE 114

Query: 453 LLNTI---------------VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPP 497
           LL  +                 E+L         DR V +LSGG +R+++ A ALL  P 
Sbjct: 115 LLAELEALLEELDGWTLEARAEEALLGLGFPD-EDRPVSSLSGGWRRRVALARALLEEPD 173

Query: 498 LIFLDEPTSGMDPGARRFLWTCIERAVSEGRC-VILTSHNMEECEALCTK 546
           L+ LDEPT+ +D  +  +L    E  +      VI+ SH+    + + T 
Sbjct: 174 LLLLDEPTNHLDLESIEWL----EDYLKRYPGTVIVVSHDRYFLDNVATH 219

Length = 530

>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 92.0 bits (229), Expect = 3e-20
 Identities = 64/218 (29%), Positives = 107/218 (49%), Gaps = 13/218 (5%)

Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
            L ++ + K +    G   AV+ IS  + +GE   LLG +G GKTT  +M+ G  +P+SG
Sbjct: 5   ALEIRNVSKSF----GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSG 60

Query: 402 NAYVMNHSIRDSMDLVRSY---IGYCPQFDALNDRLTPREHLEFYSRVRNVPSV-LLNTI 457
              +    I D    V      IG   Q  AL   +T  E++ F  +VR       +   
Sbjct: 61  EILLDGEDITD----VPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKAR 116

Query: 458 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW 517
           V E+L    L  ++DR+   LSGG +++++ A AL+  P ++ LDEP S +D   R  + 
Sbjct: 117 VEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMR 176

Query: 518 TCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQ 554
             ++    E G   +  +H+ EE  A+  ++ +M +G+
Sbjct: 177 KELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGR 214

Length = 352

>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system

 Score = 89.5 bits (223), Expect = 3e-20
 Identities = 57/228 (25%), Positives = 104/228 (45%), Gaps = 22/228 (9%)

Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
           + V+ L K Y N K    A+  +S  +  GE   L+G +GAGK+T  + L G ++PTSG+
Sbjct: 1   IEVENLSKTYPNGK---KALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGS 57

Query: 403 AYVMNHSI----RDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIV 458
             +    I      ++  +R  IG   Q   L +RL+  E++    R+         ++ 
Sbjct: 58  VLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENV-LSGRLGRRS--TWRSLF 114

Query: 459 N-----------ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSG 507
                        +L +  L   + +    LSGG +++++ A AL+  P LI  DEP + 
Sbjct: 115 GLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVAS 174

Query: 508 MDP-GARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 554
           +DP  +R+ +         EG  VI++ H ++       ++  + +G+
Sbjct: 175 LDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGR 222

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241

>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 90.2 bits (224), Expect = 4e-20
 Identities = 65/217 (29%), Positives = 108/217 (49%), Gaps = 13/217 (5%)

Query: 345 VKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 404
           VK L   Y      K  +N +SF V +GE   ++G NG+GK+TT +++ G ++  SG   
Sbjct: 7   VKNLTFKY-KEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQII 65

Query: 405 VMNHSI-RDSMDLVRSYIGYC---P--QFDALNDRLTPREHLEFYSRVRNVPSVLLNTIV 458
           +    +  +++  +R  IG     P  QF       T  + + F    + +P   +   V
Sbjct: 66  IDGDLLTEENVWDIRHKIGMVFQNPDNQFVGA----TVEDDVAFGLENKGIPHEEMKERV 121

Query: 459 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT 518
           NE+L    +  + +RE   LSGG K++++ A A+   P +I LDE TS +DP  R  L  
Sbjct: 122 NEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIK 181

Query: 519 CIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQ 554
            I+    +    VI  +H+++E  AL  ++ +M NGQ
Sbjct: 182 TIKGIRDDYQMTVISITHDLDEV-ALSDRVLVMKNGQ 217

Length = 279

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 92.6 bits (231), Expect = 7e-20
 Identities = 60/236 (25%), Positives = 100/236 (42%), Gaps = 23/236 (9%)

Query: 339 SGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP 398
              +L V+ L   +A   G  PAV  +SF V  GE  G++G +G+GK+T    L G +  
Sbjct: 2   MSPLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPE 61

Query: 399 ----TSG-----NAYVMNHSIRDSMDLVRSYIGYCPQ--FDALNDRLTPREHLE--FYSR 445
               TSG        ++  S R+   L    I    Q    +LN  +T  + +       
Sbjct: 62  GGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLH 121

Query: 446 VRNVPSVLLNTIVNESLNKFALGHYSDREVRT-----LSGGNKRKLSTAIALLGNPPLIF 500
            +   +      V E L +  L    D E R      LSGG ++++  A+AL   P L+ 
Sbjct: 122 GKGSRAEARKRAV-ELLEQVGL---PDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLI 177

Query: 501 LDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQF 555
            DEPT+ +D   +  +   ++    E G  V+  +H++     L  ++ +M  G+ 
Sbjct: 178 ADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEI 233

Length = 539

>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

 Score = 88.4 bits (220), Expect = 7e-20
 Identities = 53/187 (28%), Positives = 88/187 (47%), Gaps = 4/187 (2%)

Query: 356 KGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI----R 411
            G + A+  +SF + +GE   L G +GAGK+T  K++ G  +PT G   V  H +     
Sbjct: 12  PGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKG 71

Query: 412 DSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYS 471
             +  +R  IG   Q   L    T  E++    RV   P   +   V+E L+   L H +
Sbjct: 72  REIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKA 131

Query: 472 DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVI 531
                 LSGG +++++ A A++  P ++  DEPT  +DP     +    E     G  V+
Sbjct: 132 RALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVL 191

Query: 532 LTSHNME 538
           + +H++E
Sbjct: 192 MATHDLE 198

Length = 223

>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional

 Score = 89.4 bits (222), Expect = 8e-20
 Identities = 59/198 (29%), Positives = 96/198 (48%), Gaps = 9/198 (4%)

Query: 349 FKIYANSKGT-KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN 407
           +K  +N + T K A++ ++  V +GE   +LG NG+GK+T  K +   + P+ G  YV  
Sbjct: 12  YKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDG 71

Query: 408 HSIRDSMDL--VRSYIGYCPQFDALNDRLTP---REHLEFYSRVRNVPSVLLNTIVNESL 462
               D  +L  +R+  G    F   ++++      E + F      +P   +   V+ESL
Sbjct: 72  LDTSDEENLWDIRNKAGMV--FQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESL 129

Query: 463 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER 522
            K  +  Y       LSGG K++++ A  L   P  I  DEPT+ +DP  RR +   I+ 
Sbjct: 130 KKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKE 189

Query: 523 AVSE-GRCVILTSHNMEE 539
              + G  +IL +H MEE
Sbjct: 190 LNKKYGITIILITHYMEE 207

Length = 280

>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C

 Score = 86.5 bits (215), Expect = 9e-20
 Identities = 52/213 (24%), Positives = 91/213 (42%), Gaps = 42/213 (19%)

Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
           L V+ +   Y       P +  +SF +  GE   ++G +G+GK+T  +++ G ++PTSG 
Sbjct: 1   LEVENVSFRYPG--AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGR 58

Query: 403 AYVMNHSIRD-SMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNES 461
             +    I     + +  ++GY PQ D L                         +I  E+
Sbjct: 59  VRLDGADISQWDPNELGDHVGYLPQDDEL----------------------FSGSI-AEN 95

Query: 462 LNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIE 521
           +               LSGG +++L  A AL GNP ++ LDEP S +D    R L   I 
Sbjct: 96  I---------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIA 140

Query: 522 RAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 554
              + G   I+ +H  E   +   ++ ++ +G+
Sbjct: 141 ALKAAGATRIVIAHRPETLAS-ADRILVLEDGR 172

This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173

>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 89.0 bits (221), Expect = 1e-19
 Identities = 66/210 (31%), Positives = 106/210 (50%), Gaps = 11/210 (5%)

Query: 352 YANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 411
           Y+   GT+ A+  I+F   +GE   LLG NGAGK+T F    G +KPTSG   +    I+
Sbjct: 9   YSYPDGTE-ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIK 67

Query: 412 -DSMDL--VRSYIGYCPQFDALNDRL---TPREHLEFYSRVRNVPSVLLNTIVNESLNKF 465
            D   L  VR  +G    F   +D+L   T  E + F      +    +   V E+L   
Sbjct: 68  YDKKSLLEVRKTVGIV--FQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAV 125

Query: 466 ALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDP-GARRFLWTCIERAV 524
            +  + ++    LSGG K++++ A  L   P +I LDEPTSG+DP GA + +    +   
Sbjct: 126 GMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLN- 184

Query: 525 SEGRCVILTSHNMEECEALCTKLTIMVNGQ 554
            EG  +I+++H+++       K+ +M +G+
Sbjct: 185 KEGITIIISTHDVDLVPVYADKVYVMSDGK 214

Length = 275

>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

 Score = 92.7 bits (231), Expect = 1e-19
 Identities = 56/230 (24%), Positives = 92/230 (40%), Gaps = 42/230 (18%)

Query: 333 VEHGADSGDVLVVKRLFKI------YANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKT 386
            E   D   + + K   +I      +       P +  +S  +  GE   ++G +G+GK+
Sbjct: 454 PEQEGDKTLIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKS 513

Query: 387 TTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSYIGYCPQFDALNDRLTPREHLEFYSR 445
           T  K+L G  KP  G   +    + D  +  +R  +GY  Q   L    + RE++     
Sbjct: 514 TLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSG-SIRENIAL--- 569

Query: 446 VRNVPSVLLNTIVN--------ESLNKFALGHYSDREVR----TLSGGNKRKLSTAIALL 493
               P      I+         E +    +G+  D  V      LSGG +++L+ A ALL
Sbjct: 570 --GNPEATDEEIIEAAQLAGAHEFIENLPMGY--DTPVGEGGANLSGGQRQRLALARALL 625

Query: 494 GNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-------GRCVILTSHN 536
             P ++ LDE TS +DP          E  + +       GR VI+ +H 
Sbjct: 626 SKPKILLLDEATSALDPE--------TEAIILQNLLQILQGRTVIIIAHR 667

Length = 709

>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 89.0 bits (221), Expect = 1e-19
 Identities = 65/229 (28%), Positives = 111/229 (48%), Gaps = 18/229 (7%)

Query: 345 VKRLFKIYANSKGT---KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
           ++ L  IY   +GT   K A++ ++  +  GE  GL+G  G+GK+T  + L G +KPTSG
Sbjct: 5   IENLTHIY--MEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSG 62

Query: 402 NAYVMNHSIRD---SMDLVRSYIG----YCPQFDALNDRLTPREHLEFYSRVRNVPSVLL 454
              +    I D    +  +R  +G    Y P++    +  T  + + F      +    +
Sbjct: 63  KIIIDGVDITDKKVKLSDIRKKVGLVFQY-PEYQLFEE--TIEKDIAFGPINLGLSEEEI 119

Query: 455 NTIVNESLNKFALGH--YSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGA 512
              V  ++N   L +  Y D+    LSGG KR+++ A  +   P ++ LDEPT+G+DP  
Sbjct: 120 ENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKG 179

Query: 513 RRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 560
           R  +   I+    E    +IL SH+ME+   L  ++ +M  G+    G+
Sbjct: 180 RDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGT 228

Length = 287

>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional

 Score = 86.4 bits (215), Expect = 2e-19
 Identities = 54/175 (30%), Positives = 82/175 (46%), Gaps = 9/175 (5%)

Query: 364 QISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRS---Y 420
            +SF +  GE   + G NGAGKT+  ++L G  +P +G        IR   D       Y
Sbjct: 19  GLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLY 78

Query: 421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSG 480
           +G+ P    +   LT  E+L FY R+        +  + E+L +  L  + D  VR LS 
Sbjct: 79  LGHQP---GIKTELTALENLRFYQRLHGPGD---DEALWEALAQVGLAGFEDVPVRQLSA 132

Query: 481 GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 535
           G +R+++ A   L   PL  LDEP + +D      L   + +   +G  VILT+H
Sbjct: 133 GQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTH 187

Length = 204

>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 87.5 bits (218), Expect = 2e-19
 Identities = 65/226 (28%), Positives = 98/226 (43%), Gaps = 13/226 (5%)

Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
           +L V+ L   Y        A+  +S  V RGE   LLG NGAGKTT  K + G ++P SG
Sbjct: 3   MLEVENLSAGYGKI----QALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSG 58

Query: 402 NAYVMNHSIRD--SMDLVRSYIGYCPQFDALNDRLTPREHLE--FYSRVRNVPSVLLNTI 457
                   I      +  R  I Y P+   +  RLT  E+L    Y+R            
Sbjct: 59  RIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQ---ERD 115

Query: 458 VNESLNKF-ALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFL 516
           + E    F  L    ++   TLSGG ++ L+ A AL+  P L+ LDEP+ G+ P     +
Sbjct: 116 LEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEI 175

Query: 517 WTCIER-AVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSA 561
           +  I+      G  ++L   N      +  +  ++ NG+    G+A
Sbjct: 176 FEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTA 221

Length = 237

>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE

 Score = 86.5 bits (215), Expect = 2e-19
 Identities = 58/197 (29%), Positives = 95/197 (48%), Gaps = 6/197 (3%)

Query: 347 RLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM 406
               +     G   A++ +S  + +GE   L G +GAGKTT  K+L GA+ P+ G   + 
Sbjct: 3   EFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIA 62

Query: 407 NHSI---RDS-MDLVRSYIGYCPQ-FDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNES 461
              +   R   + L+R  IG   Q F  L DR T  E++     VR      +   V  +
Sbjct: 63  GEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDR-TVYENVALPLEVRGKKEREIQRRVGAA 121

Query: 462 LNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIE 521
           L +  L H +D     LSGG +++++ A A++ +PPL+  DEPT  +DP     +   ++
Sbjct: 122 LRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLK 181

Query: 522 RAVSEGRCVILTSHNME 538
           R    G  VI+ +H++ 
Sbjct: 182 RLNKRGTTVIVATHDLS 198

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214

>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C

 Score = 84.3 bits (209), Expect = 6e-19
 Identities = 54/198 (27%), Positives = 90/198 (45%), Gaps = 37/198 (18%)

Query: 359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 418
           +  +  +S  + +GE   LLG +G+GK+T  ++LTG +KP  G   +    + D    + 
Sbjct: 15  QQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALS 74

Query: 419 SYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTL 478
           S I    Q          R +L F + +RN                  LG       R  
Sbjct: 75  SLISVLNQ----------RPYL-FDTTLRN-----------------NLG-------RRF 99

Query: 479 SGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 538
           SGG +++L+ A  LL + P++ LDEPT G+DP   R L + I   V + + +I  +H++ 
Sbjct: 100 SGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFE-VLKDKTLIWITHHLT 158

Query: 539 ECEALCTKLTIMVNGQFT 556
             E +  K+  + NG+  
Sbjct: 159 GIEHM-DKILFLENGKII 175

The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score = 89.1 bits (222), Expect = 9e-19
 Identities = 57/228 (25%), Positives = 94/228 (41%), Gaps = 25/228 (10%)

Query: 339 SGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP 398
               L ++ + K +        A + +S  V +GE   LLG NGAGK+T  K+L G  +P
Sbjct: 1   MEPALEMRGITKRF----PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQP 56

Query: 399 TSGNAYV--MNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNT 456
            SG   V      I+   D +R  IG   Q   L   LT  E++           +    
Sbjct: 57  DSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQ 116

Query: 457 IVNE----------SLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTS 506
                          ++        D +V  LS G ++++    AL     L+ LDEPT+
Sbjct: 117 ARARIKELSERYGLPVDP-------DAKVADLSVGEQQRVEILKALYRGARLLILDEPTA 169

Query: 507 GMDPG-ARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNG 553
            + P  A       + R  +EG+ +I  +H ++E  A+  ++T++  G
Sbjct: 170 VLTPQEADELFEI-LRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRG 216

Length = 501

>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter

 Score = 84.8 bits (210), Expect = 1e-18
 Identities = 48/186 (25%), Positives = 84/186 (45%), Gaps = 4/186 (2%)

Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV----MNHSIRD 412
               A++ I+  +  GE   L+G +GAGK+T  K++     PTSG   V    ++     
Sbjct: 12  NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGR 71

Query: 413 SMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSD 472
           ++  +R  IG   Q   L       E++ F   V  VP   +   V  +L    L H   
Sbjct: 72  AIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHR 131

Query: 473 REVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL 532
                LSGG +++++ A A++ +P ++  DEPT  +DP     +   +++    G  V++
Sbjct: 132 ALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVV 191

Query: 533 TSHNME 538
            +H  E
Sbjct: 192 ATHAKE 197

FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214

>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 84.9 bits (210), Expect = 1e-18
 Identities = 52/178 (29%), Positives = 79/178 (44%), Gaps = 5/178 (2%)

Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMD 415
           G    +N IS  V  GE   + G +G GK+T  K++   I PTSG        +     +
Sbjct: 14  GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPE 73

Query: 416 LVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYS-DRE 474
             R  + YC Q  AL    T  ++L F  ++RN           + L +FAL      + 
Sbjct: 74  AYRQQVSYCAQTPALFGD-TVEDNLIFPWQIRN--RRPDRAAALDLLARFALPDSILTKN 130

Query: 475 VRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL 532
           +  LSGG K++++    L   P ++ LDE TS +D   +R +   I R V E    +L
Sbjct: 131 ITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVL 188

Length = 223

>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 85.6 bits (212), Expect = 1e-18
 Identities = 49/193 (25%), Positives = 90/193 (46%), Gaps = 5/193 (2%)

Query: 359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 418
           + A+  +S  +  GE   +LG +G GKTT   ++ G + P+ G+  +    I        
Sbjct: 18  RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGP----G 73

Query: 419 SYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTL 478
           +  G   Q +AL   L   +++ F  ++R +       I ++ L    L     + +  L
Sbjct: 74  AERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQL 133

Query: 479 SGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTC-IERAVSEGRCVILTSHNM 537
           SGG ++++  A AL   P L+ LDEP   +D   R  +    ++     G+ V+L +H++
Sbjct: 134 SGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDI 193

Query: 538 EECEALCTKLTIM 550
           EE   L T+L ++
Sbjct: 194 EEALFLATRLVVL 206

Length = 259

>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein

 Score = 89.0 bits (221), Expect = 1e-18
 Identities = 67/231 (29%), Positives = 103/231 (44%), Gaps = 13/231 (5%)

Query: 346 KRLFKIYANSKGTKPAVNQISFGVGR-GECFGLLGLNGAGKTTTFKMLTGAIKP-TSGNA 403
            RL   +   +  K  +  +S GV + GE   ++G +GAGKTT    L         G+ 
Sbjct: 25  SRLRGCFCRERPRKHLLKNVS-GVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSG 83

Query: 404 YVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVR---NVPSVLLNTIVNE 460
            V+ + +      +R+   Y  Q D     LT REHL F + +R    V        V+E
Sbjct: 84  SVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDE 143

Query: 461 SLNKFALGHYSD------REVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARR 514
            L    L   ++        V+ LSGG +++L+ A  LL +PPL+F DEPTSG+D     
Sbjct: 144 VLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAY 203

Query: 515 FLWTCIERAVSEGRCVILTSHN-MEECEALCTKLTIMVNGQFTCLGSATHL 564
            +   ++    +G+ +I T H    E   L  K+ +M  G+   LGS    
Sbjct: 204 SVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQA 254

[Transport and binding proteins, Other]. Length = 617

>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 84.6 bits (210), Expect = 2e-18
 Identities = 43/171 (25%), Positives = 76/171 (44%), Gaps = 27/171 (15%)

Query: 19  KVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNT--------- 69
           K+ G      +    IGY PQ  +++          F   V++V  VLL           
Sbjct: 62  KIFGKPVRKRRKRLRIGYVPQKSSVD--------RSFPITVKDV--VLLGRYGKKGWFRR 111

Query: 70  -------IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 122
                   V+E+L +  +    DR++  LSGG K+++  A AL  NP L+ LDEP +G+D
Sbjct: 112 LNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVD 171

Query: 123 PGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 173
              ++ ++  ++    EG+ V++ +H++    A   +  I +N      G 
Sbjct: 172 VAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDR-VICLNRHLIASGP 221

Length = 254

>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 86.1 bits (214), Expect = 2e-18
 Identities = 58/237 (24%), Positives = 101/237 (42%), Gaps = 30/237 (12%)

Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
           +L VK L   +    G   AV+ +SF + +GE  G++G +G+GK+   K + G +     
Sbjct: 1   LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPK--P 58

Query: 402 NAYVMNHSIR-DSMDLVR-----------SYIGYCPQ--FDALNDRLTPREHL-EFYSRV 446
           NA ++   I  D  DL+              I    Q    +LN  +T  + + E     
Sbjct: 59  NARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLH 118

Query: 447 RNVPSV--LLNTIVNESLNKFALGHYSDREVR------TLSGGNKRKLSTAIALLGNPPL 498
               S        + E L    +    D E R       LSGG ++++  A+AL  NP L
Sbjct: 119 GKGLSKKEAKERAI-ELLELVGI---PDPERRLKSYPHELSGGMRQRVMIAMALALNPKL 174

Query: 499 IFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQ 554
           +  DEPT+ +D   +  +   ++    E G  +IL +H++     +  ++ +M  G+
Sbjct: 175 LIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGR 231

Length = 316

>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 83.8 bits (208), Expect = 3e-18
 Identities = 30/99 (30%), Positives = 54/99 (54%), Gaps = 1/99 (1%)

Query: 70  IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFL 129
            V E+L    L    DR    LSGG K++++ A  L   P ++ LDEPT+G+DP  RR L
Sbjct: 118 RVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRREL 177

Query: 130 WTCIER-AVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 167
              +++     G+ +I+ +H++E       ++ ++ +G+
Sbjct: 178 LELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGK 216

Length = 235

>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

 Score = 83.8 bits (208), Expect = 5e-18
 Identities = 60/235 (25%), Positives = 95/235 (40%), Gaps = 43/235 (18%)

Query: 339 SGDVLVVKRLFKIYANSKGTKP-----AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT 393
              +L VK L K +   KG        AV+ +SF +  GE  GL+G +G GK+T  +++ 
Sbjct: 1   MEPLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLIL 60

Query: 394 GAIKPTSGNAYVMNHSIRD-SMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSV 452
           G  +PTSG        I   S +  R  +                E LE   +V      
Sbjct: 61  GLEEPTSGEILFEGKDITKLSKEERRERV---------------LELLE---KV------ 96

Query: 453 LLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGA 512
                    L +  L  Y   E   LSGG ++++  A AL  NP LI  DEP S +D   
Sbjct: 97  --------GLPEEFLYRY-PHE---LSGGQRQRIGIARALALNPKLIVADEPVSALDVSV 144

Query: 513 RRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
           +  +   ++    E G   +  SH++     +  ++ +M  G+   +G    + S
Sbjct: 145 QAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFS 199

Length = 268

>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 83.6 bits (207), Expect = 7e-18
 Identities = 56/187 (29%), Positives = 96/187 (51%), Gaps = 13/187 (6%)

Query: 361 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDL--VR 418
            +  +SF + +G+   ++G NG+GK+T  K++ G  K  SG  +  N +I    +   +R
Sbjct: 24  TLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAI-TDDNFEKLR 82

Query: 419 SYIGYC---P--QFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDR 473
            +IG     P  QF     +      LE ++    VP   ++  V+E+L +  +   +D 
Sbjct: 83  KHIGIVFQNPDNQFVGSIVKYDVAFGLENHA----VPYDEMHRRVSEALKQVDMLERADY 138

Query: 474 EVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILT 533
           E   LSGG K++++ A  L  NP +I LDE TS +DP AR+ L   + +  SE    I++
Sbjct: 139 EPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIIS 198

Query: 534 -SHNMEE 539
            +H++ E
Sbjct: 199 ITHDLSE 205

Length = 269

>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL

 Score = 82.1 bits (203), Expect = 8e-18
 Identities = 56/205 (27%), Positives = 91/205 (44%), Gaps = 18/205 (8%)

Query: 360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH----------S 409
           P +  +S  V  GEC  L G +GAGK+T  K L     P SG   V  H          S
Sbjct: 22  PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILV-RHEGAWVDLAQAS 80

Query: 410 IRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGH 469
            R+ +++ R  IGY  QF  +  R++  E +      R VP         E L +  +  
Sbjct: 81  PREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNI-- 138

Query: 470 YSDR----EVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS 525
             +R       T SGG +++++ A   + + P++ LDEPT+ +D   R+ +   I  A +
Sbjct: 139 -PERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKA 197

Query: 526 EGRCVILTSHNMEECEALCTKLTIM 550
            G  +I   H+ E  E +  ++  +
Sbjct: 198 RGAALIGIFHDEEVRELVADRVMDV 222

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224

>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily

 Score = 81.4 bits (202), Expect = 9e-18
 Identities = 44/136 (32%), Positives = 63/136 (46%), Gaps = 30/136 (22%)

Query: 33  YIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLS 92
            IGY PQ D L+  LT RE L F        +  L                     R LS
Sbjct: 83  IIGYVPQDDILHPTLTVRETLMF--------AAKL---------------------RGLS 113

Query: 93  GGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM-E 151
           GG ++++S A+ L+ NP L+FLDEPTSG+D  +   + + + R    GR +I + H    
Sbjct: 114 GGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSS 173

Query: 152 ECEALCTKLTIMVNGQ 167
           E   L  KL ++  G+
Sbjct: 174 EIFELFDKLLLLSQGR 189

ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194

>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein

 Score = 84.5 bits (209), Expect = 9e-18
 Identities = 65/236 (27%), Positives = 110/236 (46%), Gaps = 23/236 (9%)

Query: 345 VKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 404
           +  + K++     T  A+N +S  V  G+ +G++G +GAGK+T  + +    +PTSG+  
Sbjct: 4   LSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVI 63

Query: 405 VMNHSIRDSMDLV----------RSYIGYCPQ-FDALNDRLTPREHLEFYSRVRNVPSVL 453
           V      D  DL           R  IG   Q F+ L+ R T   ++     + N P   
Sbjct: 64  V------DGQDLTTLSNSELTKARRQIGMIFQHFNLLSSR-TVFGNVALPLELDNTPKDE 116

Query: 454 LNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR 513
           +   V E L    LG   D     LSGG K++++ A AL  NP ++  DE TS +DP   
Sbjct: 117 IKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATT 176

Query: 514 RFLWTC---IERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
           + +      I R +  G  ++L +H M+  + +C  + ++ NG+    G+ + + S
Sbjct: 177 QSILELLKEINRRL--GLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343

>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional

 Score = 86.0 bits (213), Expect = 9e-18
 Identities = 60/210 (28%), Positives = 98/210 (46%), Gaps = 13/210 (6%)

Query: 361 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSY 420
           A+  ++  V  GE   LLG NGAGK+T  K+L+G  +PT G   + N +  + +D   + 
Sbjct: 20  ALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINY-NKLDHKLAA 78

Query: 421 ---IGYCPQFDALNDRLTPREHLEFYSR-----VRNVPSV---LLNTIVNESLNKFALGH 469
              IG   Q  ++ D LT  E+L +  R     V  V  +    +       L +  L  
Sbjct: 79  QLGIGIIYQELSVIDELTVLENL-YIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKV 137

Query: 470 YSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC 529
             D +V  LS  +K+ L  A  L+ +  +I +DEPTS +      +L+  + +   EG  
Sbjct: 138 DLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTA 197

Query: 530 VILTSHNMEECEALCTKLTIMVNGQFTCLG 559
           ++  SH + E   +C + T+M +G   C G
Sbjct: 198 IVYISHKLAEIRRICDRYTVMKDGSSVCSG 227

Length = 510

>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F

 Score = 79.8 bits (198), Expect = 1e-17
 Identities = 54/194 (27%), Positives = 74/194 (38%), Gaps = 70/194 (36%)

Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
           + ++ L K Y    G K  +  IS  +  G+  GL+G NGAGK+T  K++ G ++P  G 
Sbjct: 1   IELENLSKTY----GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEG- 55

Query: 403 AYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL 462
                  I      V+  IGY  Q                                    
Sbjct: 56  -------IVTWGSTVK--IGYFEQ------------------------------------ 70

Query: 463 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER 522
                          LSGG K +L+ A  LL NP L+ LDEPT+ +D  +   L    E 
Sbjct: 71  ---------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEAL----EE 111

Query: 523 AVSE-GRCVILTSH 535
           A+ E    VIL SH
Sbjct: 112 ALKEYPGTVILVSH 125

Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144

>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system

 Score = 81.8 bits (203), Expect = 1e-17
 Identities = 60/222 (27%), Positives = 93/222 (41%), Gaps = 39/222 (17%)

Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIR 411
           G K A+  IS  + +GE   L+G +G GK+T  ++L          P  G   +    I 
Sbjct: 11  GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIY 70

Query: 412 DSMDLV---RSYIGYCPQ----FD---ALNDRLTPREHLEFYSRVRNVPSVLLNTIVNES 461
           D    V   R  +G   Q    F      N     R H              L+  V E+
Sbjct: 71  DLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGI-------KLKEELDERVEEA 123

Query: 462 LNKFALGHYSDREV------RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRF 515
           L K AL      EV        LSGG +++L  A AL   P ++ LDEPTS +DP +   
Sbjct: 124 LRKAAL----WDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTA- 178

Query: 516 LWTCIERAVSEGR---CVILTSHNMEECEALCTKLTIMVNGQ 554
               IE  ++E +    +++ +HNM++   +  +   ++NG+
Sbjct: 179 ---KIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGR 217

Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227

>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional

 Score = 81.1 bits (200), Expect = 1e-17
 Identities = 50/177 (28%), Positives = 79/177 (44%), Gaps = 5/177 (2%)

Query: 359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 418
           +P + QISF +  G    L G NGAGKTT  K++ G + P  G       SI+  +   +
Sbjct: 14  QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQ 73

Query: 419 SYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTL 478
             + +      +N  LT RE+  +     ++        + E    F+L H  D     L
Sbjct: 74  KQLCFVGHRSGINPYLTLRENCLY-----DIHFSPGAVGITELCRLFSLEHLIDYPCGLL 128

Query: 479 SGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 535
           S G KR+++     +    L  LDEP   +D  +   + T I+   ++G  V+LTSH
Sbjct: 129 SSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSH 185

Length = 200

>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

 Score = 85.1 bits (211), Expect = 2e-17
 Identities = 56/208 (26%), Positives = 98/208 (47%), Gaps = 23/208 (11%)

Query: 365 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI--RDSMDLVRSYIG 422
           IS  V  GE  GL G+ GAG+T   + L G      G   +    I    +   +   + 
Sbjct: 282 ISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLV 341

Query: 423 YCPQFDALNDRLTPREHLEFYSRVR-NVPSVLLNTIV--------NESLNKF--ALG--- 468
           Y P+     DR +   +L+  + +  NV ++  N           N  L ++  AL    
Sbjct: 342 YLPE-----DRQSSGLYLD--APLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKF 394

Query: 469 HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGR 528
           +++++  RTLSGGN++K+  A  L  +P L+ +DEPT G+D  AR  ++  I    ++  
Sbjct: 395 NHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNV 454

Query: 529 CVILTSHNMEECEALCTKLTIMVNGQFT 556
            V+  S ++EE E +  ++ +M  G+ +
Sbjct: 455 AVLFISSDLEEIEQMADRVLVMHQGEIS 482

Length = 510

>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional

 Score = 84.1 bits (208), Expect = 2e-17
 Identities = 60/208 (28%), Positives = 103/208 (49%), Gaps = 12/208 (5%)

Query: 359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDL-- 416
           + AV+ +S  + +GE F LLG +G GK+T  +ML G  +PT+G        + D +DL  
Sbjct: 32  QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQI------MLDGVDLSH 85

Query: 417 VRSY---IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDR 473
           V  Y   I    Q  AL   +T  +++ F  +   +P   + + VNE L    +  ++ R
Sbjct: 86  VPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKR 145

Query: 474 EVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR-RFLWTCIERAVSEGRCVIL 532
           +   LSGG +++++ A +L   P L+ LDEP   +D   R R     ++     G   ++
Sbjct: 146 KPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVM 205

Query: 533 TSHNMEECEALCTKLTIMVNGQFTCLGS 560
            +H+ EE   +  ++ IM  G+F  +G 
Sbjct: 206 VTHDQEEAMTMAGRIAIMNRGKFVQIGE 233

Length = 377

>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

 Score = 85.0 bits (211), Expect = 3e-17
 Identities = 70/237 (29%), Positives = 108/237 (45%), Gaps = 46/237 (19%)

Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
            L V+RL    A     KP +  ISF +  GE  G++G +G+GK+T  ++L G   PTSG
Sbjct: 334 ALSVERLT--AAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSG 391

Query: 402 NAYVMNHSIR-DSMDLVR-------SYIGYCPQ----FD---ALN-----DRLTPREHLE 441
                  S+R D  DL +        +IGY PQ    FD   A N     +   P + +E
Sbjct: 392 -------SVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIE 444

Query: 442 FYSRVRNVPSVLLNTIVNESLNKFALGHYSDREV----RTLSGGNKRKLSTAIALLGNPP 497
                           V+E + +   G+  D  +     TLSGG +++++ A AL G+P 
Sbjct: 445 AARLAG----------VHELILRLPQGY--DTRIGEGGATLSGGQRQRIALARALYGDPF 492

Query: 498 LIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 554
           L+ LDEP S +D      L   I  A + G  V++ +H      A   K+ ++ +G+
Sbjct: 493 LVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSAL-ASVDKILVLQDGR 548

Length = 580

>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE

 Score = 80.6 bits (200), Expect = 3e-17
 Identities = 62/222 (27%), Positives = 92/222 (41%), Gaps = 25/222 (11%)

Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI--RDSM 414
           G    +  +S  V +GE   +LG NG GKTT  K L G +   SG+  +    I      
Sbjct: 11  GQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPH 70

Query: 415 DLVRSYIGYCPQFDALNDRLTPREHLE-----FYSRVRNVPSVLLNTIVNESLNKF-ALG 468
           +  R+ I Y PQ   +  RLT  E+L         R R +P        +E    F  L 
Sbjct: 71  ERARAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIP--------DEIYELFPVLK 122

Query: 469 HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-- 526
               R    LSGG +++L+ A AL+  P L+ LDEPT G+ P     +   I R +    
Sbjct: 123 EMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPS----IIKDIGRVIRRLR 178

Query: 527 ---GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 565
              G  ++L    ++    L  +  +M  G+    G+   L 
Sbjct: 179 AEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230

>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional

 Score = 81.5 bits (201), Expect = 3e-17
 Identities = 60/232 (25%), Positives = 104/232 (44%), Gaps = 22/232 (9%)

Query: 339 SGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP 398
               +VV  +   + N      A+   SF V  G    L+G+NG+GK+T FK L G ++ 
Sbjct: 3   QQAGIVVNDVTVTWRNGH---TALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRL 59

Query: 399 TSGNAYVMNHSIRDSMDLVRSYIGYCPQ-------FDALNDRLT---PREHLEFYSRVRN 448
            SG   ++    R +  L ++ + Y PQ       F  L + +       H+ +  R   
Sbjct: 60  ASGKISILGQPTRQA--LQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRR--- 114

Query: 449 VPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGM 508
                   IV  +L +  +  +  R++  LSGG K+++  A A+     +I LDEP +G+
Sbjct: 115 -AKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGV 173

Query: 509 DPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 560
           D      + + +     EG+ +++++HN+      C   T+MV G  T L S
Sbjct: 174 DVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFC-DYTVMVKG--TVLAS 222

Length = 272

>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family

 Score = 84.3 bits (209), Expect = 3e-17
 Identities = 61/227 (26%), Positives = 104/227 (45%), Gaps = 40/227 (17%)

Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR-DSMD 415
           G KP +  ISF +  GE   ++G +G+GK+T  +++ G   PTSG       S+R D  D
Sbjct: 329 GKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSG-------SVRLDGAD 381

Query: 416 LVR-------SYIGYCPQ----FD---ALN-----DRLTPREHLEFYSRVRNVPSVLLNT 456
           L +        +IGY PQ    F    A N     +   P + +E  +++  V  ++L  
Sbjct: 382 LKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIE-AAKLAGVHELILR- 439

Query: 457 IVNESLNKFALGHYSDREVR--TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARR 514
                      G+ +       TLSGG +++++ A AL G+P L+ LDEP S +D    +
Sbjct: 440 --------LPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQ 491

Query: 515 FLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSA 561
            L   I+   + G  V++ +H       +  K+ ++ +G+    G  
Sbjct: 492 ALANAIKALKARGITVVVITHRPSLLGCV-DKILVLQDGRIARFGER 537

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544

>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 81.4 bits (201), Expect = 4e-17
 Identities = 58/209 (27%), Positives = 98/209 (46%), Gaps = 12/209 (5%)

Query: 341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS 400
           +++  K +   Y +SK  KPA+N ISF + RG    L+G NG+GK+T  K++ G + P  
Sbjct: 4   NIVEFKHVSFTYPDSK--KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDD 61

Query: 401 GNAYVMNHS----IRDSMDLVRSYIGYCPQFDALNDRL---TPREHLEFYSRVRNVPSVL 453
                +          ++  +R  +G    F   +++    T  + + F    R VP   
Sbjct: 62  NPNSKITVDGITLTAKTVWDIREKVGIV--FQNPDNQFVGATVGDDVAFGLENRAVPRPE 119

Query: 454 LNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR 513
           +  IV + L    +  Y D E   LSGG K++++ A  L   P +I LDE TS +DP  +
Sbjct: 120 MIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGK 179

Query: 514 RFLWTCIERAVSE-GRCVILTSHNMEECE 541
             +   I +   +    VI  +H+++E  
Sbjct: 180 EQILKLIRKLKKKNNLTVISITHDIDEAN 208

Length = 282

>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter

 Score = 80.5 bits (199), Expect = 4e-17
 Identities = 58/225 (25%), Positives = 104/225 (46%), Gaps = 10/225 (4%)

Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
           + V+ + K +    G   A++ +S  +  GE   LLG +G+GKTT  +++ G  +P SG 
Sbjct: 3   IEVRNVSKRF----GDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGT 58

Query: 403 AYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNV----PSVLLNTIV 458
                    D + +    +G+  Q  AL   +T  +++ F  RV+      P   +   V
Sbjct: 59  ILFGGEDATD-VPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKV 117

Query: 459 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT 518
           +E L    L   +DR    LSGG +++++ A AL   P ++ LDEP   +D   R+ L  
Sbjct: 118 HELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRR 177

Query: 519 CIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSAT 562
            + R   E     +  +H+ EE   +  ++ +M  G+   +G+  
Sbjct: 178 WLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPD 222

Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239

>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional

 Score = 80.6 bits (200), Expect = 6e-17
 Identities = 55/242 (22%), Positives = 90/242 (37%), Gaps = 64/242 (26%)

Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDL 416
           G +  ++ +S  +  GE   +LG NGAGK+T  + L+G + P SG   +    + D    
Sbjct: 13  GGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLAD---- 68

Query: 417 VRSYIGYCPQFDALNDRLTPRE------------HLEFYSRVRNV------PSVLLNT-- 456
                             +P E             L F   V  V      P  L     
Sbjct: 69  -----------------WSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAED 111

Query: 457 --IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALL------GNPPLIFLDEPTSGM 508
             +V  +L +  L H + R+   LSGG ++++  A  L       G P  + LDEPTS +
Sbjct: 112 DALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSAL 171

Query: 509 DPG--------ARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 560
           D          AR+      ER +     V+L  H++        ++ ++  G+    G+
Sbjct: 172 DLAHQHHVLRLARQL---AHERGL--AVIVVL--HDLNLAARYADRIVLLHQGRLVADGT 224

Query: 561 AT 562
             
Sbjct: 225 PA 226

Length = 258

>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 80.8 bits (199), Expect = 6e-17
 Identities = 58/225 (25%), Positives = 102/225 (45%), Gaps = 8/225 (3%)

Query: 347 RLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM 406
           RL  +  +     PA+  I+  + +GE  G++G NG+GK+T    L G ++P  G   V 
Sbjct: 3   RLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVS 62

Query: 407 NHSIRDSMDL--VRSYIGYC---PQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNES 461
                D   L  +R  +G     P+   +    T  E L F      +P + +   V+ +
Sbjct: 63  GIDTGDFSKLQGIRKLVGIVFQNPETQFVGR--TVEEDLAFGPENLCLPPIEIRKRVDRA 120

Query: 462 LNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIE 521
           L +  L  Y  R  +TLSGG  + ++ A  L   P  +  DE TS +DP +   +   I+
Sbjct: 121 LAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIK 180

Query: 522 RAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
           +   +G+ ++  +HN+EE      ++ +M  G+    G   ++ S
Sbjct: 181 KLHEKGKTIVYITHNLEELHD-ADRIIVMDRGKIVLEGEPENVLS 224

Length = 274

>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters

 Score = 78.8 bits (195), Expect = 7e-17
 Identities = 50/185 (27%), Positives = 75/185 (40%), Gaps = 40/185 (21%)

Query: 356 KGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKML-----TGAIKPTSGNAYVMNHSI 410
            G +  +N IS  V  G    L+G +GAGKTT   +L      G I    G   +    +
Sbjct: 17  GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVIT---GEILINGRPL 73

Query: 411 RDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHY 470
             +    +   GY  Q D  +  LT RE L F        S LL                
Sbjct: 74  DKNF---QRSTGYVEQQDVHSPNLTVREALRF--------SALL---------------- 106

Query: 471 SDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCV 530
                R LS   +++L+  + L   P ++FLDEPTSG+D  A   +   +++    G+ +
Sbjct: 107 -----RGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAI 161

Query: 531 ILTSH 535
           + T H
Sbjct: 162 LCTIH 166

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192

>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein

 Score = 79.1 bits (195), Expect = 7e-17
 Identities = 51/199 (25%), Positives = 96/199 (48%), Gaps = 10/199 (5%)

Query: 366 SFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCP 425
              V  GE   ++G +GAGK+T   ++ G I+P SG+  V + S        R  +    
Sbjct: 18  DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRP-VSMLF 76

Query: 426 QFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFA----LGHYSDREVRTLSGG 481
           Q + L   LT R+++         P + LN    E +   A    +  Y DR    LSGG
Sbjct: 77  QENNLFAHLTVRQNIGLGLH----PGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGG 132

Query: 482 NKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEEC 540
            +++++ A  L+   P++ LDEP S +DP  R  +   +++  SE  R +++ +H++ + 
Sbjct: 133 QRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDA 192

Query: 541 EALCTKLTIMVNGQFTCLG 559
            A+ +++ ++  G+   + 
Sbjct: 193 RAIASQIAVVSQGKIKVVS 211

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213

>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system

 Score = 79.8 bits (198), Expect = 8e-17
 Identities = 31/97 (31%), Positives = 49/97 (50%)

Query: 71  VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW 130
             E L +  L   +DR    LS G +R+L  A AL  +P L+ LDEP +G++P     L 
Sbjct: 124 AEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELA 183

Query: 131 TCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 167
             I      G  V+L  H+M+   +L  ++T++  G+
Sbjct: 184 ELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGR 220

The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236

>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA

 Score = 80.6 bits (199), Expect = 1e-16
 Identities = 41/145 (28%), Positives = 77/145 (53%), Gaps = 1/145 (0%)

Query: 34  IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSG 93
           IGY P+ + L   +  RE+L+F + +  +   LL   V E +    L     +++  LS 
Sbjct: 77  IGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSK 136

Query: 94  GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEEC 153
           G ++++  A AL+ +P ++ LDEPT+G+DP     +   I + + + + +IL++H M+E 
Sbjct: 137 GYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVI-KNIGKDKTIILSTHIMQEV 195

Query: 154 EALCTKLTIMVNGQFTCLGSATHLK 178
           EA+C ++ I+  G+         L 
Sbjct: 196 EAICDRVIIINKGKIVADKKLDELS 220

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301

>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 80.2 bits (198), Expect = 1e-16
 Identities = 57/211 (27%), Positives = 91/211 (43%), Gaps = 35/211 (16%)

Query: 345 VKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 404
           V+ L   Y +  GTK A+  +S  +  G    LLG NGAGK+T    L G   P  G   
Sbjct: 7   VEDLHFRYKD--GTK-ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVK 63

Query: 405 VMNHSIRDSMD-LVRSYIGYCPQ----------------FDALNDRLTPREHLEFYSRVR 447
           VM   +    +  VRS +G   Q                F  +N  L   E         
Sbjct: 64  VMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDE--------- 114

Query: 448 NVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSG 507
                 +   V E+L    +  + D+    LS G K++++ A  L  +P +I LDEP + 
Sbjct: 115 ------VERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAY 168

Query: 508 MDPGARRFLWTCIERAVSEGRCVILTSHNME 538
           +DP  +  L   ++R  ++G+ VI+ +H+++
Sbjct: 169 LDPRGQETLMEILDRLHNQGKTVIVATHDVD 199

Length = 274

>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system

 Score = 77.7 bits (192), Expect = 2e-16
 Identities = 31/102 (30%), Positives = 50/102 (49%)

Query: 68  NTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARR 127
           N      L    L    +R   +LSGG K++L+ A ALL    L+  DEPTSG+D     
Sbjct: 104 NEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNME 163

Query: 128 FLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFT 169
            +   I    ++G+ VI+ +H+ E    +C ++ ++ NG   
Sbjct: 164 RVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205

Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205

>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 79.5 bits (196), Expect = 2e-16
 Identities = 64/224 (28%), Positives = 105/224 (46%), Gaps = 38/224 (16%)

Query: 352 YANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG----NAYVMN 407
           Y  S GT  A+  I+  + +GE   +LG NGAGK+T F+ L G +KP+SG    +   ++
Sbjct: 13  YNYSDGTH-ALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPID 71

Query: 408 HSIRDSMDLVRSYIGYCPQ----------------FDALNDRLTPREHLEFYSRVRNVPS 451
           +S +  M L R  +G   Q                F A+N +L P +  E   RV N   
Sbjct: 72  YSRKGLMKL-RESVGMVFQDPDNQLFSASVYQDVSFGAVNLKL-PED--EVRKRVDNA-- 125

Query: 452 VLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDP- 510
                     L +  + H  D+    LS G K++++ A  L+  P ++ LDEPT+G+DP 
Sbjct: 126 ----------LKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPM 175

Query: 511 GARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 554
           G    +   +E     G  +I+ +H+++     C  + +M  G+
Sbjct: 176 GVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGR 219

Length = 283

>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein

 Score = 80.5 bits (199), Expect = 2e-16
 Identities = 52/204 (25%), Positives = 96/204 (47%), Gaps = 11/204 (5%)

Query: 370 GRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLV-----RSYIGYC 424
           G+G    + G +G+GKTT  +++ G  +P  G   +   ++ DS   +     +  IGY 
Sbjct: 22  GQGVT-AIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYV 80

Query: 425 PQFDALNDRLTPREHLEF-YSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNK 483
            Q   L   L+ R +L +   R R     +    V E L    +GH   R    LSGG K
Sbjct: 81  FQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLG---IGHLLGRLPGRLSGGEK 137

Query: 484 RKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC-VILTSHNMEECEA 542
           ++++   ALL +P L+ +DEP + +D   +  +   +ER  +E    ++  SH+++E   
Sbjct: 138 QRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLR 197

Query: 543 LCTKLTIMVNGQFTCLGSATHLKS 566
           L  ++ ++ +G+    G    + +
Sbjct: 198 LADRVVVLEDGRVAAAGPIAEVWA 221

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354

>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C

 Score = 78.4 bits (194), Expect = 2e-16
 Identities = 51/191 (26%), Positives = 87/191 (45%), Gaps = 24/191 (12%)

Query: 359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLV 417
            P +  IS  +  GE   L+G +G+GK+T   ++       SG   +  H +RD ++  +
Sbjct: 15  PPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASL 74

Query: 418 RSYIGYCPQ----FD-------ALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFA 466
           R  IG   Q    F+       A       RE +E  +R  N          +E + +  
Sbjct: 75  RRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAAN---------AHEFIMELP 125

Query: 467 LGHYSDREVR--TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAV 524
            G+ +    R   LSGG +++++ A ALL +PP++ LDE TS +D  + R +   +ER  
Sbjct: 126 EGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERL- 184

Query: 525 SEGRCVILTSH 535
            + R   + +H
Sbjct: 185 MKNRTTFVIAH 195

MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234

>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional

 Score = 81.6 bits (202), Expect = 2e-16
 Identities = 64/226 (28%), Positives = 108/226 (47%), Gaps = 46/226 (20%)

Query: 358 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLV 417
           + P VN +SF + +GE  G+ GL GAG+T   K+L GA+  TSG   +  H +     + 
Sbjct: 264 SGPGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEV-----VT 318

Query: 418 RSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYS------ 471
           RS     PQ D L + +       + S  R    ++L   V E+++  AL ++S      
Sbjct: 319 RS-----PQ-DGLANGIV------YISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSL 366

Query: 472 -----------------------DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGM 508
                                  ++ +  LSGGN++K++ A  L+  P ++ LDEPT G+
Sbjct: 367 KHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGV 426

Query: 509 DPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 554
           D GA++ ++  I +  +EG  +IL S  M E   +  ++ +M  G+
Sbjct: 427 DVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGR 472

Length = 501

>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit

 Score = 81.6 bits (202), Expect = 3e-16
 Identities = 63/228 (27%), Positives = 93/228 (40%), Gaps = 36/228 (15%)

Query: 329 ERERVEHG-----ADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGA 383
              R   G     A     L    +   Y    G +PA+  +SF V  GE   L+G +GA
Sbjct: 303 AAPRPLAGKAPVTAAPAPSLEFSGVSVAYP---GRRPALRPVSFTVPPGERVALVGPSGA 359

Query: 384 GKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSYIGYCPQ----FDALNDRLTPRE 438
           GK+T   +L G + PT G+  V    + D   D  R  I + PQ    F       T  E
Sbjct: 360 GKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAG-----TIAE 414

Query: 439 HLEFYSR-------VRNVPSVLLNTIVNESLNKFALGHYSDREV----RTLSGGNKRKLS 487
           ++               +    L+  V       AL    D  +      LSGG  ++L+
Sbjct: 415 NIRLARPDASDAEIREALERAGLDEFVA------ALPQGLDTPIGEGGAGLSGGQAQRLA 468

Query: 488 TAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 535
            A A L + PL+ LDEPT+ +D      +     RA+++GR V+L +H
Sbjct: 469 LARAFLRDAPLLLLDEPTAHLDAETEAEV-LEALRALAQGRTVLLVTH 515

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529

>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C

 Score = 78.0 bits (193), Expect = 3e-16
 Identities = 54/188 (28%), Positives = 99/188 (52%), Gaps = 14/188 (7%)

Query: 359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLV 417
           +P +  +SF +  G+   ++G +G+GK+T  ++L      +SG+  +    IR+ ++D +
Sbjct: 14  RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSL 73

Query: 418 RSYIGYCPQFDAL-NDRLTPREHLEFYSRV----RNVPSVLLNTIVNESLNKFALGHYS- 471
           R  IG  PQ   L ND  T   ++  Y R       V        +++ + +F  G+ + 
Sbjct: 74  RRAIGVVPQDTVLFND--TIGYNIR-YGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTI 130

Query: 472 --DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC 529
             +R ++ LSGG K++++ A A+L NPP++ LDE TS +D    R +   +   VS+GR 
Sbjct: 131 VGERGLK-LSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRD-VSKGRT 188

Query: 530 VILTSHNM 537
            I+ +H +
Sbjct: 189 TIVIAHRL 196

ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236

>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 81.6 bits (202), Expect = 3e-16
 Identities = 64/247 (25%), Positives = 108/247 (43%), Gaps = 39/247 (15%)

Query: 328 KERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTT 387
           +     E  A +G  L ++ +   Y   +    A+   +  + +GE   +LG +G+GK+T
Sbjct: 322 EVTFPDEQTATTGQALELRNVSFTYPGQQ--TKALKNFNLTLAQGEKVAILGRSGSGKST 379

Query: 388 TFKMLTGAIKPTSGNAYVMNHSIR--DSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSR 445
             ++L GA  P  G+  +    I   D   L R  I    Q          R HL F   
Sbjct: 380 LLQLLAGAWDPQQGSITLNGVEIASLDEQAL-RETISVLTQ----------RVHL-FSGT 427

Query: 446 VRNVPSVLL------NTIVNESLNKFALGHYSDREV-----------RTLSGGNKRKLST 488
           +R+  ++ L      +  +  +L +  L    +              R LSGG +R+L+ 
Sbjct: 428 LRD--NLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLAL 485

Query: 489 AIALLGNPPLIFLDEPTSGMDP-GARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKL 547
           A ALL + PL  LDEPT G+DP   R+ L    E A  EG+ +++ +H +   E    ++
Sbjct: 486 ARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA--EGKTLLMVTHRLRGLER-MDRI 542

Query: 548 TIMVNGQ 554
            ++ NG+
Sbjct: 543 IVLDNGK 549

Length = 573

>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 78.2 bits (193), Expect = 4e-16
 Identities = 51/219 (23%), Positives = 87/219 (39%), Gaps = 31/219 (14%)

Query: 362 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD----SMDLV 417
           ++ +S  +  GE   +LG NGAGK+T  K L+G + P SG   +    +       +   
Sbjct: 17  LDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARH 76

Query: 418 RSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLN--TIVNESLNKFALGHYSDREV 475
           R      PQ  +L    T +E ++                 I  ++L    L   + R+ 
Sbjct: 77  R---AVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDY 133

Query: 476 RTLSGGNKRKLSTAIAL------LGNPPLIFLDEPTSGMDPG--------ARRFLWTCIE 521
           RTLSGG ++++  A  L      + +   +FLDEPTS +D          AR+      E
Sbjct: 134 RTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQL---ARE 190

Query: 522 RAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 560
                    +L  H++        ++ ++  G+    GS
Sbjct: 191 GG---AVLAVL--HDLNLAAQYADRIVLLHQGRVIASGS 224

Length = 259

>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 78.5 bits (194), Expect = 4e-16
 Identities = 61/225 (27%), Positives = 108/225 (48%), Gaps = 16/225 (7%)

Query: 338 DSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK 397
              +++ V+ +   Y ++     A+  +SF V  GE   ++G NG+GK+T  K+L G + 
Sbjct: 1   MKEEIIRVEHISFRYPDAA--TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL 58

Query: 398 PTSGNAYV--MNHSIRDSMDLVRSYIGYC---P--QFDALNDRLTPREHLEFYSRVRNVP 450
           P +G   V  M  S     D VR  +G     P  QF       T ++ + F      VP
Sbjct: 59  PEAGTITVGGMVLSEETVWD-VRRQVGMVFQNPDNQFVGA----TVQDDVAFGLENIGVP 113

Query: 451 SVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDP 510
              +   V+++L +  +  + +RE   LSGG K++++ A  L   P +I LDE TS +DP
Sbjct: 114 REEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDP 173

Query: 511 GARRFLWTCIERAVSEGR-CVILTSHNMEECEALCTKLTIMVNGQ 554
             RR +   + +   +    V+  +H+++E  A   ++ +M  G+
Sbjct: 174 RGRREVLETVRQLKEQKGITVLSITHDLDEA-AQADRVIVMNKGE 217

Length = 279

>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit

 Score = 79.1 bits (195), Expect = 4e-16
 Identities = 53/185 (28%), Positives = 95/185 (51%), Gaps = 2/185 (1%)

Query: 377 LLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTP 436
           LLG +G GKTT  ++L G  +P SG+  +    + +    +R +I    Q  AL   +T 
Sbjct: 1   LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLR-HINMVFQSYALFPHMTV 59

Query: 437 REHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNP 496
            E++ F  ++R VP   +   V E+L    L  ++DR+   LSGG +++++ A AL+  P
Sbjct: 60  EENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKP 119

Query: 497 PLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQF 555
            ++ LDEP S +D   R  +   ++    + G   +  +H+ EE   +  ++ IM  G+ 
Sbjct: 120 KILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIMRKGKI 179

Query: 556 TCLGS 560
             +G+
Sbjct: 180 AQIGT 184

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325

>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like

 Score = 76.8 bits (190), Expect = 5e-16
 Identities = 44/135 (32%), Positives = 65/135 (48%), Gaps = 1/135 (0%)

Query: 34  IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSG 93
           IG   Q  AL   LT  E++ F  ++R VP   +   V E L    L    +R    LSG
Sbjct: 74  IGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSG 133

Query: 94  GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEE 152
           G +++++ A AL   P L+ LDEP S +D   R  L   ++    E G   I  +H+ EE
Sbjct: 134 GQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEE 193

Query: 153 CEALCTKLTIMVNGQ 167
             AL  ++ +M  G+
Sbjct: 194 ALALADRIAVMNEGR 208

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213

>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional

 Score = 80.7 bits (200), Expect = 5e-16
 Identities = 58/200 (29%), Positives = 94/200 (47%), Gaps = 5/200 (2%)

Query: 361 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV--MNHSIRDSMDLVR 418
           A++ ISF    G+   L+G NGAGK+T  K+L+G  +P +G+  +         +   + 
Sbjct: 19  ALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALA 78

Query: 419 SYIGYCPQFDALNDRLTPREHL---EFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREV 475
           + +    Q   L   +T  E+L   +   +   V   LLN    E L    +    D  +
Sbjct: 79  AGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPL 138

Query: 476 RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 535
           + LS G ++ +  A AL  N  +I  DEPTS +       L+  I    +EGR ++  SH
Sbjct: 139 KYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSH 198

Query: 536 NMEECEALCTKLTIMVNGQF 555
            MEE  ALC  +T+  +G++
Sbjct: 199 RMEEIFALCDAITVFKDGRY 218

Length = 501

>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed

 Score = 79.9 bits (197), Expect = 6e-16
 Identities = 50/215 (23%), Positives = 93/215 (43%), Gaps = 15/215 (6%)

Query: 355 SKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI--RD 412
             G    ++ +   V  G   GL+G NGAGKTT  + + G + PT+G   V    +    
Sbjct: 12  EFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALS 71

Query: 413 SMDLVRSYIGYCPQFDALNDRLTPRE--------HLEFYSRVRNVPSVLLNTIVNESLNK 464
           +    R  +   PQ  +L+     R+        H   +              V  ++ +
Sbjct: 72  ARAASRR-VASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETD----RAAVERAMER 126

Query: 465 FALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAV 524
             +  ++DR V +LSGG ++++  A AL    P++ LDEPT+ +D   +      + R V
Sbjct: 127 TGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLV 186

Query: 525 SEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLG 559
            +G+  +   H+++     C +L ++ +G+    G
Sbjct: 187 DDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAG 221

Length = 402

>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit

 Score = 80.5 bits (199), Expect = 6e-16
 Identities = 57/199 (28%), Positives = 85/199 (42%), Gaps = 34/199 (17%)

Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMD 415
           G  P ++ +S  +  GE   +LG +G+GK+T    L G + P  G   +    +     D
Sbjct: 346 GAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQD 405

Query: 416 LVRSYIGYCPQ----FDAL---NDRL-----TPREHLEFYSRV------RNVPSVLLNTI 457
            VR  +  C Q    FD     N RL     T  E      RV      R +P  L +T+
Sbjct: 406 EVRRRVSVCAQDAHLFDTTVRENLRLARPDATDEELWAALERVGLADWLRALPDGL-DTV 464

Query: 458 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW 517
           + E                 LSGG +++L+ A ALL + P++ LDEPT  +D      L 
Sbjct: 465 LGEG-------------GARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELL 511

Query: 518 TCIERAVSEGRCVILTSHN 536
             +  A   GR V+L +H+
Sbjct: 512 EDL-LAALSGRTVVLITHH 529

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530

>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein

 Score = 76.6 bits (189), Expect = 7e-16
 Identities = 59/230 (25%), Positives = 101/230 (43%), Gaps = 29/230 (12%)

Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
           +L  + L K Y   K     +  +S  +G+GE   ++G +G+GK+T   +L G   PTSG
Sbjct: 1   LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSG 60

Query: 402 NAYVMNHSIR-----DSMDLVRSYIGYCPQFDALNDRLTPREHL--EFYSRVRNV--PSV 452
                  S+      +   L    +G+  QF           HL  +F + + NV  P +
Sbjct: 61  EVLFNGQSLSKLSSNERAKLRNKKLGFIYQF----------HHLLPDF-TALENVAMPLL 109

Query: 453 LLNTIVNES-------LNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPT 505
           +    V E+       L K  L H  +     LSGG +++++ A AL+  P L+  DEPT
Sbjct: 110 IGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPT 169

Query: 506 SGMDP-GARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 554
             +D   A+      +E         ++ +H++E  + L  ++  M +GQ
Sbjct: 170 GNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKL-DRVLEMKDGQ 218

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221

>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 76.8 bits (189), Expect = 7e-16
 Identities = 63/197 (31%), Positives = 101/197 (51%), Gaps = 14/197 (7%)

Query: 349 FKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 408
           FK  + S   K  +  IS     G  + ++G +GAGK+T  K++   I PT G+  +   
Sbjct: 6   FKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGV 65

Query: 409 SIR--DSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVR---NVPSVLLNTIVNESLN 463
            I+  D +DL R  IG   Q   L +  T ++++E+   ++   NV      +IV   LN
Sbjct: 66  DIKTIDVIDL-RRKIGMVFQQPHLFEG-TVKDNIEYGPMLKGEKNVDVEYYLSIV--GLN 121

Query: 464 KFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERA 523
           K     Y+ R+V+ LSGG  +++S A  L  NP ++ LDEPTS +DP +   +   I + 
Sbjct: 122 K----EYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKL 177

Query: 524 VSE-GRCVILTSHNMEE 539
            ++    VI  +HNME+
Sbjct: 178 KNKMNLTVIWITHNMEQ 194

Length = 241

>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters

 Score = 76.0 bits (188), Expect = 9e-16
 Identities = 39/161 (24%), Positives = 73/161 (45%), Gaps = 11/161 (6%)

Query: 19  KVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTI-------V 71
           +V G      K    IGY PQ  ++ DR  P    +           L   +       V
Sbjct: 57  RVFGKPLE--KERKRIGYVPQRRSI-DRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKV 113

Query: 72  NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT 131
           +E+L +  L   +DR++  LSGG ++++  A AL+ +P L+ LDEP +G+DP  +  ++ 
Sbjct: 114 DEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYE 173

Query: 132 CIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLG 172
            +     EG  +++ +H++        +  +++N      G
Sbjct: 174 LLRELRREGMTILVVTHDLGLVLEYFDR-VLLLNRTVVASG 213

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213

>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

 Score = 75.9 bits (187), Expect = 1e-15
 Identities = 46/138 (33%), Positives = 76/138 (55%), Gaps = 4/138 (2%)

Query: 29  KNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREV 88
           K+L  IG   +   L + LT RE+L+ ++ +  +P    ++ ++E LN   L +   ++ 
Sbjct: 67  KDLHKIGSLIESPPLYENLTARENLKVHTTLLGLP----DSRIDEVLNIVDLTNTGKKKA 122

Query: 89  RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 148
           +  S G K++L  AIALL +P L+ LDEPT+G+DP   + L   I     +G  VIL+SH
Sbjct: 123 KQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSH 182

Query: 149 NMEECEALCTKLTIMVNG 166
            + E + L   + I+  G
Sbjct: 183 ILSEVQQLADHIGIISEG 200

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223

>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily

 Score = 76.2 bits (188), Expect = 1e-15
 Identities = 42/132 (31%), Positives = 62/132 (46%), Gaps = 6/132 (4%)

Query: 22  GSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTI-----VNESLN 76
           G     D+    + Y  Q D L   LT RE L + + +R  P    + I      +  L 
Sbjct: 71  GQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRL-PRKSSDAIRKKRVEDVLLR 129

Query: 77  KFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERA 136
             AL       V+ +SGG +R++S A+ LL +P ++ LDEPTSG+D      L + + + 
Sbjct: 130 DLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQL 189

Query: 137 VSEGRCVILTSH 148
               R VILT H
Sbjct: 190 ARRNRIVILTIH 201

The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226

>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 77.0 bits (190), Expect = 1e-15
 Identities = 62/218 (28%), Positives = 101/218 (46%), Gaps = 30/218 (13%)

Query: 358 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI------- 410
            K A+N +S  +  G+   ++G NGAGK+T    + G +KPTSG   +    +       
Sbjct: 18  EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAK 77

Query: 411 RDSMDLVRSY----IGYCPQFDALNDRLTPREHL---EFYSRVRNVPSVLLNTIVN---E 460
           R ++ L R +     G  P        LT  E+L   E   + R + S L     +   E
Sbjct: 78  RANL-LARVFQDPLAGTAP-------ELTIEENLALAESRGKKRGLSSALNERRRSSFRE 129

Query: 461 SLNKFALG---HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW 517
            L +  LG     SDR +  LSGG ++ LS  +A L  P ++ LDE T+ +DP    F+ 
Sbjct: 130 RLARLGLGLENRLSDR-IGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVM 188

Query: 518 TCIERAVSEGR-CVILTSHNMEECEALCTKLTIMVNGQ 554
               + V E +   ++ +HNME+      +L ++ +G+
Sbjct: 189 ELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGK 226

Length = 263

>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

 Score = 78.5 bits (193), Expect = 1e-15
 Identities = 50/212 (23%), Positives = 92/212 (43%), Gaps = 5/212 (2%)

Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP--TSGNAYVMNHSIRDSM 414
           G    ++ +S  +  GE   L+G +G GKTT  + + G +K    +G   + +  +  + 
Sbjct: 16  GANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAP 75

Query: 415 DLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDRE 474
              R  +    Q  AL   L   +++ F  R + +P   +   V ++L    LG  +   
Sbjct: 76  PHKRG-LALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHL 134

Query: 475 VRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE--GRCVIL 532
              LSGG +++++ A A+   P ++ LDEP S +D   R  +   I     E     ++ 
Sbjct: 135 PAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILC 194

Query: 533 TSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
            +H+ ++   L  K  IM +G+    G    L
Sbjct: 195 VTHDQDDALTLADKAGIMKDGRLAAHGEPQAL 226

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362

>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 77.1 bits (190), Expect = 1e-15
 Identities = 60/223 (26%), Positives = 103/223 (46%), Gaps = 29/223 (13%)

Query: 352 YANSKGT---KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV--- 405
           Y   KGT     A++ ++    +G+ + ++G  G+GK+T  + +   +KPT+G   V   
Sbjct: 10  YTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDI 69

Query: 406 -MNHSIRDS-MDLVRSYIGYCPQF--DALNDRLTPREHL----EFYSRVRNVPSVLLNTI 457
            + H  +D  +  VR  IG   QF    L +    RE +     F   +  V +     +
Sbjct: 70  TITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLL 129

Query: 458 VNESLNKFALGHYSDREVRTLS-----GGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGA 512
           ++       LG    R+V + S     GG  RK++    L  NP +I LDEPT+G+DP +
Sbjct: 130 MD-------LGF--SRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQS 180

Query: 513 RRFLWTCIER-AVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 554
           +R +   ++     E + +IL SH+M E      ++ +M  G 
Sbjct: 181 KRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGS 223

Length = 286

>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional

 Score = 78.5 bits (193), Expect = 1e-15
 Identities = 53/210 (25%), Positives = 97/210 (46%), Gaps = 6/210 (2%)

Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMD- 415
           G    V   S  +  GE F ++GL+G+GK+T  ++L   I+PT G   +    I    D 
Sbjct: 39  GLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDA 98

Query: 416 ----LVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYS 471
               + R  I    Q  AL   +T  ++  F   +  + +        ++L +  L +Y+
Sbjct: 99  ELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYA 158

Query: 472 DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW-TCIERAVSEGRCV 530
                 LSGG ++++  A AL  NP ++ +DE  S +DP  R  +    ++      R +
Sbjct: 159 HSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTI 218

Query: 531 ILTSHNMEECEALCTKLTIMVNGQFTCLGS 560
           +  SH+++E   +  ++ IM NG+   +G+
Sbjct: 219 VFISHDLDEAMRIGDRIAIMQNGEVVQVGT 248

Length = 400

>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE

 Score = 76.8 bits (189), Expect = 1e-15
 Identities = 59/237 (24%), Positives = 93/237 (39%), Gaps = 34/237 (14%)

Query: 342 VLVVKRLFKIYANS-----KGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI 396
           +L V+ +   Y        K   P +  +S  +  GE  GLLG +G GK+T  ++L G  
Sbjct: 2   LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLE 61

Query: 397 KPTSGNAYVMNHSI----RDSMDLVRSYIGYCPQ--FDALNDRLT-------PREHLEFY 443
           KP  G        +    R      R  +    Q    A+N R+T       P  HL   
Sbjct: 62  KPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSL 121

Query: 444 SRVRNVPSVLLNTIVNESLNKFAL-GHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLD 502
                   +       E L+   L    +D+  R LSGG  ++++ A AL   P LI LD
Sbjct: 122 DESEQKARIA------ELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLD 175

Query: 503 EPTSGMDPGARRFLWTCIERAVSE-----GRCVILTSHNMEECEALCTKLTIMVNGQ 554
           E  S +D      L   I   + +     G   +  +H++   ++ C ++ +M  GQ
Sbjct: 176 EAVSNLD----MVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQ 228

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265

>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

 Score = 75.4 bits (186), Expect = 2e-15
 Identities = 39/126 (30%), Positives = 69/126 (54%), Gaps = 1/126 (0%)

Query: 31  LSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRT 90
           L+ +G   Q   L+  L+ R++L +++ +  +        + E L +  L   +D +VR 
Sbjct: 73  LARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARARIAELLARLGLAERADDKVRE 132

Query: 91  LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER-AVSEGRCVILTSHN 149
           L+GG++R++  A ALL  P L+ LDEPT G+DP +R  +   +   A  +G  V+  +H 
Sbjct: 133 LNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQGLSVLWATHL 192

Query: 150 MEECEA 155
           ++E EA
Sbjct: 193 VDEIEA 198

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236

>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 76.2 bits (188), Expect = 2e-15
 Identities = 53/209 (25%), Positives = 97/209 (46%), Gaps = 18/209 (8%)

Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD--SM 414
           GTK  ++ +S  + +G    ++G NGAGK+T   M++  +K  SG   +    +    S 
Sbjct: 12  GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSK 71

Query: 415 DLVRSYIGYCPQFDALNDRLTPREHLEF----YSRVRNVPSVLLNT----IVNESLNKFA 466
           +L +  +    Q + +N RLT R+ + F    YS+ R      L      I+NE++    
Sbjct: 72  ELAKK-LSILKQENHINSRLTVRDLVGFGRFPYSQGR------LTKEDRRIINEAIEYLH 124

Query: 467 LGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE 526
           L   SDR +  LSGG +++   A+ L  +   + LDEP + +D      +   + R   E
Sbjct: 125 LEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADE 184

Query: 527 -GRCVILTSHNMEECEALCTKLTIMVNGQ 554
            G+ +++  H++         +  + NG+
Sbjct: 185 LGKTIVVVLHDINFASCYSDHIVALKNGK 213

Length = 252

>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 78.8 bits (195), Expect = 2e-15
 Identities = 53/211 (25%), Positives = 98/211 (46%), Gaps = 16/211 (7%)

Query: 359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLV 417
           KPA++ ++  +  G+   L+G +GAGK+T   +L G + PT G   V    +RD S +  
Sbjct: 334 KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAW 393

Query: 418 RSYIGYCPQ----FDALNDRLTPREHLEFYSRVRN---VPSVLLNTIVNESLNKFALGHY 470
           R  I +  Q    F       T RE++       +   + + L    + E + K      
Sbjct: 394 RKQISWVSQNPYLFAG-----TIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDT 448

Query: 471 S-DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC 529
                   LSGG  ++L+ A ALL    L+ LDEPT+ +D    + +   ++   ++ + 
Sbjct: 449 VIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQEL-AKQKT 507

Query: 530 VILTSHNMEECEALCTKLTIMVNGQFTCLGS 560
           V++ +H +E+  A   ++ ++ NG+    G+
Sbjct: 508 VLVITHRLEDA-ADADRIVVLDNGRLVEQGT 537

Length = 559

>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 75.8 bits (186), Expect = 3e-15
 Identities = 56/199 (28%), Positives = 98/199 (49%), Gaps = 24/199 (12%)

Query: 376 GLLGLNGAGKTTTFKMLTGAIKPTSG----NAYVMNHSIRDSMDLVRSYIGYCPQFDALN 431
           GL+G NG GK+T F  L+G ++P  G        +++S R  + L R  +    Q     
Sbjct: 31  GLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLAL-RQQVATVFQ----- 84

Query: 432 DRLTPREHLEFYSRV--------RN--VPSVLLNTIVNESLNKFALGHYSDREVRTLSGG 481
               P + + FY+ +        RN  VP   +   V+E+L      H+  + ++ LS G
Sbjct: 85  ---DPEQQI-FYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHG 140

Query: 482 NKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECE 541
            K++++ A AL+     + LDEPT+G+DP  R  +   I R V++G  VI++SH+++   
Sbjct: 141 QKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIY 200

Query: 542 ALCTKLTIMVNGQFTCLGS 560
            +   + ++  GQ    G+
Sbjct: 201 EISDAVYVLRQGQILTHGA 219

Length = 271

>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D

 Score = 74.8 bits (184), Expect = 3e-15
 Identities = 52/196 (26%), Positives = 94/196 (47%), Gaps = 15/196 (7%)

Query: 365 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR----DSMDLVRSY 420
           ++  + +GE   L+G +G GK+T   +++G  +PTSG   +    I     D M + ++Y
Sbjct: 4   VNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNY 63

Query: 421 IGYCPQFDALNDRLTPREH--LEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTL 478
                   +L   LT RE+  L     + ++       IV E +    L   +D+    L
Sbjct: 64  --------SLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQL 115

Query: 479 SGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC-VILTSHNM 537
           SGG K++++ A AL   P ++ LDEP   +D   R  L   + +   E R  V++ +H++
Sbjct: 116 SGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDV 175

Query: 538 EECEALCTKLTIMVNG 553
           +E   L  ++ ++ NG
Sbjct: 176 DEALLLSDRVVMLTNG 191

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230

>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 74.8 bits (184), Expect = 4e-15
 Identities = 59/234 (25%), Positives = 100/234 (42%), Gaps = 39/234 (16%)

Query: 343 LVVKRLFKIYA--NSKGTK-PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT 399
           L V  + K +      G + P +  +S  V  GEC  L G +G+GK+T  + L     P 
Sbjct: 5   LNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPD 64

Query: 400 SGNAYV---------MNHSIRDSMDLVRSYIGYCPQF-------DALN-------DRLTP 436
            G   V         +    R+ +++ R+ IGY  QF        AL+        R  P
Sbjct: 65  EGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVP 124

Query: 437 REHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNP 496
           RE     ++  ++ +  LN  + E L   A          T SGG +++++ A   + + 
Sbjct: 125 RE--VARAKAADLLT-RLN--LPERLWSLAPA--------TFSGGEQQRVNIARGFIVDY 171

Query: 497 PLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIM 550
           P++ LDEPT+ +D   R  +   I  A + G  ++   H+ E  EA+  +L  +
Sbjct: 172 PILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDV 225

Length = 235

>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 76.6 bits (189), Expect = 4e-15
 Identities = 58/209 (27%), Positives = 93/209 (44%), Gaps = 22/209 (10%)

Query: 364 QISFGV-GRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLV----- 417
             +F +  RG    L G +G+GKT+   M+ G  +P  G   +    + D+   +     
Sbjct: 16  DANFTLPARGIT-ALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPE 74

Query: 418 RSYIGYCPQFDALNDRLTPREHLEFYSRVR----NVPSVLLNTIVNESLNKFALGHYSDR 473
           +  IGY  Q DA   RL P  H      +R           + +V   L    + H  DR
Sbjct: 75  KRRIGYVFQ-DA---RLFP--HYTVRGNLRYGMWKSMRAQFDQLV-ALLG---IEHLLDR 124

Query: 474 EVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL- 532
              TLSGG K++++   ALL  P L+ +DEP + +D   +R +   +ER   E    IL 
Sbjct: 125 YPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILY 184

Query: 533 TSHNMEECEALCTKLTIMVNGQFTCLGSA 561
            SH+++E   L  ++ ++ NG+    G  
Sbjct: 185 VSHSLDEVLRLADRVVVLENGKVKASGPL 213

Length = 352

>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional

 Score = 74.1 bits (182), Expect = 4e-15
 Identities = 54/186 (29%), Positives = 79/186 (42%), Gaps = 15/186 (8%)

Query: 355 SKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM 414
           S+  +P    + F V  GE   + G NGAGKTT  ++L G +   SG   +   +     
Sbjct: 20  SRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG- 78

Query: 415 DLVRSYIGYCPQFDALNDRLTPREHLEFYS-----RVRNVPSVLLNTIVNESLNKFALGH 469
           D  R ++ Y      L   L+  E+L F       R + +P   L  IV        L  
Sbjct: 79  DRSR-FMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSAL-AIV-------GLAG 129

Query: 470 YSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC 529
           Y D  VR LS G K++L+ A   L   PL  LDEP + +D      +   I   +  G  
Sbjct: 130 YEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGA 189

Query: 530 VILTSH 535
            ++T+H
Sbjct: 190 ALVTTH 195

Length = 214

>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed

 Score = 74.8 bits (184), Expect = 4e-15
 Identities = 63/210 (30%), Positives = 100/210 (47%), Gaps = 27/210 (12%)

Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDL 416
           G +  ++ +S  +  G+   LLG NGAGK+T  +++ G + P  G     N  +R     
Sbjct: 15  GQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEG-VIKRNGKLR----- 68

Query: 417 VRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVR 476
               IGY PQ   L+  L P   +  + R+R  P      I+  +L +   GH  D  ++
Sbjct: 69  ----IGYVPQKLYLDTTL-PLT-VNRFLRLR--PGTKKEDIL-PALKRVQAGHLIDAPMQ 119

Query: 477 TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC-VILTSH 535
            LSGG  +++  A ALL  P L+ LDEPT G+D   +  L+  I++   E  C V++ SH
Sbjct: 120 KLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSH 179

Query: 536 NM-----EECEALCTKLTIMVNGQFTCLGS 560
           ++     +  E LC      +N    C G+
Sbjct: 180 DLHLVMAKTDEVLC------LNHHICCSGT 203

Length = 251

>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

 Score = 74.9 bits (185), Expect = 5e-15
 Identities = 41/152 (26%), Positives = 66/152 (43%), Gaps = 13/152 (8%)

Query: 34  IGYCPQFDALNDRLTPRE--------HLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSD 85
           + Y PQ  +    LT  E        HL  + R    PS     IV E+L    L H +D
Sbjct: 78  LAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGR----PSKEDEEIVEEALELLGLEHLAD 133

Query: 86  REVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW-TCIERAVSEGRCVI 144
           R V  LSGG ++++  A AL    P++ LDEPTS +D   +  +     +    +G  V+
Sbjct: 134 RPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVV 193

Query: 145 LTSHNMEECEALCTKLTIMVNGQFTCLGSATH 176
           +  H++         L ++ +G+    G+   
Sbjct: 194 MVLHDLNLAARYADHLILLKDGKIVAQGTPEE 225

Length = 258

>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

 Score = 74.6 bits (184), Expect = 5e-15
 Identities = 56/201 (27%), Positives = 94/201 (46%), Gaps = 30/201 (14%)

Query: 361 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-------S 413
           AVN ++  V   E   L+G NGAGKTT F  LTG  KPT G   +    I          
Sbjct: 20  AVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIAR 79

Query: 414 MDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVN---------ESLNK 464
           M +VR++     Q   L   +T  E+L   ++ + + + L + ++          E+L++
Sbjct: 80  MGVVRTF-----QHVRLFREMTVIENL-LVAQHQQLKTGLFSGLLKTPAFRRAESEALDR 133

Query: 465 FA-------LGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW 517
            A       L  +++R+   L+ G +R+L  A  ++  P ++ LDEP +G++P   + L 
Sbjct: 134 AATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELD 193

Query: 518 TCIERAVSE-GRCVILTSHNM 537
             I    +E    V+L  H+M
Sbjct: 194 ELIAELRNEHNVTVLLIEHDM 214

Length = 255

>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein

 Score = 76.8 bits (189), Expect = 8e-15
 Identities = 60/230 (26%), Positives = 105/230 (45%), Gaps = 14/230 (6%)

Query: 338 DSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK 397
           + GDV++  R    +      +  V+ +SF + RGE  G+ GL GAG+T   + L GA  
Sbjct: 252 EIGDVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYP 311

Query: 398 PT-SGNAYVMNH--SIRDSMDLVRSYIGYCPQFDALNDRLTPR---------EHLEFYSR 445
               GN ++      IR+    +R+ I   P+ D     + P            L+ +  
Sbjct: 312 GKFEGNVFINGKPVDIRNPAQAIRAGIAMVPE-DRKRHGIVPILGVGKNITLSVLKSFCF 370

Query: 446 VRNVPSVLLNTIVNESLNKFALGHYS-DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEP 504
              + +     I+  ++ +  +   S    +  LSGGN++K   A  LL NP ++ LDEP
Sbjct: 371 KMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEP 430

Query: 505 TSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 554
           T G+D GA+  ++  I +   EG  +I+ S  + E   L  ++ ++  G+
Sbjct: 431 TRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGK 480

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500

>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins

 Score = 72.1 bits (178), Expect = 9e-15
 Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 1/104 (0%)

Query: 70  IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPG-ARRF 128
            V ++L    L H +DR    LSGG ++++  A AL   PP++ LDEPTS +D       
Sbjct: 77  YVPQALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIEL 136

Query: 129 LWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLG 172
           L      A   G+ V++  H++        ++ ++ +G+    G
Sbjct: 137 LELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180

ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180

>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter

 Score = 73.5 bits (181), Expect = 9e-15
 Identities = 43/135 (31%), Positives = 72/135 (53%), Gaps = 1/135 (0%)

Query: 34  IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSG 93
           I Y PQ  AL   +T  +++ +  + R V    +   V E      + H  +R+  TLSG
Sbjct: 73  ISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSG 132

Query: 94  GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEE 152
           G +++++ A AL+ NP ++ LDEP S +D   +  L   +++   E G  V+  +H+ EE
Sbjct: 133 GEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEE 192

Query: 153 CEALCTKLTIMVNGQ 167
             AL  K+ IM+NG+
Sbjct: 193 AWALADKVAIMLNGK 207

Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional

 Score = 76.5 bits (189), Expect = 1e-14
 Identities = 56/213 (26%), Positives = 95/213 (44%), Gaps = 28/213 (13%)

Query: 362 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-PTSGNAYVMNH--SIRDSMDLVR 418
           V+ +SF + RGE  G+ GL GAG+T   + L GA      G  ++      IR+    + 
Sbjct: 278 VDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIA 337

Query: 419 SYIGYCPQFDALNDRLTPREH----------------LEFYSRVRNVPSVLLNTIVNESL 462
             I   P+     DR   +                  L+ ++    +        + ES+
Sbjct: 338 QGIAMVPE-----DR---KRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESI 389

Query: 463 NKFALGHYS-DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIE 521
            +  +   S +  +  LSGGN++K   A  LL NP ++ LDEPT G+D GA+  ++  I 
Sbjct: 390 QRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLIN 449

Query: 522 RAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 554
           + V +G  +I+ S  + E   L  ++ +M  G+
Sbjct: 450 QLVQQGVAIIVISSELPEVLGLSDRVLVMHEGK 482

Length = 506

>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 74.5 bits (183), Expect = 1e-14
 Identities = 61/243 (25%), Positives = 103/243 (42%), Gaps = 24/243 (9%)

Query: 340 GDVLVVKRLFKIYANSKGTKP--AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK 397
             +L VK L+ ++ + K      A+N IS+   + + + ++G +G+GK+T      G IK
Sbjct: 19  DIILRVKNLYCVF-DEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK 77

Query: 398 PTSGNAYVMNHSIRDSMDLVRSYIGYCPQ----FDALNDRLT-----PREHLEFYSRVRN 448
              G   V +  I D  +          +    F  L  R++     P   L F   +  
Sbjct: 78  SKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQL-FKDTIEK 136

Query: 449 ---VPSVLLNTIVNES-------LNKFALGH-YSDREVRTLSGGNKRKLSTAIALLGNPP 497
                 V L    +E+       LNK  L   Y +R    LSGG KR+++ A  L   P 
Sbjct: 137 DIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPE 196

Query: 498 LIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTC 557
           ++  DEPT+G+DP     +   I  A +  + V + +H ME    +  ++ +M  G+   
Sbjct: 197 ILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILK 256

Query: 558 LGS 560
            G+
Sbjct: 257 TGT 259

Length = 320

>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional

 Score = 73.0 bits (179), Expect = 2e-14
 Identities = 46/145 (31%), Positives = 76/145 (52%), Gaps = 1/145 (0%)

Query: 34  IGYCPQFDALNDRLTPREHLEFYSRVR-NVPSVLLNTIVNESLNKFALGHYSDREVRTLS 92
           IGY PQ  ++  RL+  ++L    ++R ++ +       NE + +F + H  D   ++LS
Sbjct: 80  IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLS 139

Query: 93  GGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEE 152
           GG +R++  A AL  NP  I LDEP +G+DP +   +   IE     G  V++T HN+ E
Sbjct: 140 GGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRE 199

Query: 153 CEALCTKLTIMVNGQFTCLGSATHL 177
             A+C +  I+  G     G+ T +
Sbjct: 200 TLAVCERAYIVSQGHLIAHGTPTEI 224

Length = 241

>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional

 Score = 72.7 bits (179), Expect = 2e-14
 Identities = 56/214 (26%), Positives = 99/214 (46%), Gaps = 15/214 (7%)

Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMD- 415
           GTK  +N +S  +  G+   L+G NG GK+T  K     + P SG  ++ +  I      
Sbjct: 13  GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSR 72

Query: 416 -LVRSYIGYCPQFDALNDRLTPRE--------HLEFYSRVRNVPSVLLNTIVNESLNKFA 466
            L R  +   PQ     + +T RE         L  + R+    S   N  VN+++ +  
Sbjct: 73  QLAR-RLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRL----SAEDNARVNQAMEQTR 127

Query: 467 LGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE 526
           + H +DR +  LSGG +++   A+ L  + P++ LDEPT+ +D   +  L   +    ++
Sbjct: 128 INHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQ 187

Query: 527 GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 560
           G+ V+   H++ +    C  L ++ NG     G+
Sbjct: 188 GKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGT 221

Length = 255

>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system

 Score = 71.6 bits (176), Expect = 3e-14
 Identities = 45/136 (33%), Positives = 67/136 (49%), Gaps = 5/136 (3%)

Query: 34  IGYCPQFDALNDRLTPREHLEF-YSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLS 92
           IG   Q  AL   L  RE+L F   R RN    +    V+E L+   L H  +R    LS
Sbjct: 77  IGLVFQQYALFPHLNVRENLAFGLKRKRNREDRIS---VDELLDLLGLDHLLNRYPAQLS 133

Query: 93  GGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNME 151
           GG K++++ A AL   P L+ LDEP S +D   R  L   +++        VI  +H++ 
Sbjct: 134 GGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLS 193

Query: 152 ECEALCTKLTIMVNGQ 167
           E E L  ++ +M +G+
Sbjct: 194 EAEYLADRIVVMEDGR 209

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214

>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional

 Score = 75.3 bits (185), Expect = 3e-14
 Identities = 54/189 (28%), Positives = 93/189 (49%), Gaps = 18/189 (9%)

Query: 361 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSY 420
           A+N ISF V  GE  G++GLNG+GK+T   ++ G   P  G        I+ S  L+   
Sbjct: 39  ALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTV-----DIKGSAALIAIS 93

Query: 421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSG 480
            G       LN +LT  E++E    +  +    +  I+ E +    +G +  + V+T S 
Sbjct: 94  SG-------LNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSS 146

Query: 481 GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERA---VSEGRCVILTSHNM 537
           G K +L  AI++  NP ++ +DE  S    G + F   C+++      +G+ +   SH++
Sbjct: 147 GMKSRLGFAISVHINPDILVIDEALS---VGDQTFTKKCLDKMNEFKEQGKTIFFISHSL 203

Query: 538 EECEALCTK 546
            + ++ CTK
Sbjct: 204 SQVKSFCTK 212

Length = 549

>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed

 Score = 74.2 bits (183), Expect = 3e-14
 Identities = 52/214 (24%), Positives = 99/214 (46%), Gaps = 16/214 (7%)

Query: 355 SKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI---- 410
           S   K  ++ +   +  GE   LLG +G GKTT  +++ G   P SG   +    I    
Sbjct: 23  SFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVP 82

Query: 411 ---RDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFAL 467
              R    + +SY        AL   +T  E++ F  R++  P+  +   V E+L    L
Sbjct: 83  AENRHVNTVFQSY--------ALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQL 134

Query: 468 GHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE- 526
             ++ R+   LSGG +++++ A A++  P ++ LDE  S +D   R+ +   ++    + 
Sbjct: 135 EEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKL 194

Query: 527 GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 560
           G   +  +H+ EE   +  ++ +M +G+    G+
Sbjct: 195 GITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGT 228

Length = 375

>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

 Score = 75.2 bits (185), Expect = 3e-14
 Identities = 62/217 (28%), Positives = 99/217 (45%), Gaps = 35/217 (16%)

Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMD 415
           G KP +  ISF +  GE   ++G +G+GK+T  K+L     PTSG   +    IRD S+D
Sbjct: 340 GKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLD 399

Query: 416 LVRSYIGYCPQFDAL------------NDRLTPREHLE------FYSRVRNVPSVLLNTI 457
            +R  IG   Q   L                T  E  E       +  + N+P    +TI
Sbjct: 400 SLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPD-GYDTI 458

Query: 458 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW 517
           V E       G         LSGG +++L+ A ALL NPP++ LDE TS +D      + 
Sbjct: 459 VGER------G-------VNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQ 505

Query: 518 TCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 554
             +++ + +GR  ++ +H +        ++ ++ NG+
Sbjct: 506 DALKK-LLKGRTTLIIAHRLST-IKNADRIIVLDNGR 540

Length = 567

>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional

 Score = 72.4 bits (177), Expect = 4e-14
 Identities = 55/248 (22%), Positives = 114/248 (45%), Gaps = 36/248 (14%)

Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI---KP 398
           ++ V++L K +   +    A++ +   +  GE   LLG +G+GK+T  + L+G I   K 
Sbjct: 4   IIRVEKLAKTFNQHQ----ALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKS 59

Query: 399 TSGNAYVMNHSIRDSMDLV------RSYIGYCPQFDALNDRLTPREH------------- 439
              +  ++  +++    L       R+  GY  Q   L +RL+  E+             
Sbjct: 60  AGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWR 119

Query: 440 --LEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPP 497
               +++R +   ++       ++L +  + H++ + V TLSGG +++++ A AL+    
Sbjct: 120 TCFSWFTREQKQRAL-------QALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAK 172

Query: 498 LIFLDEPTSGMDP-GARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFT 556
           +I  DEP + +DP  AR  + T  +   ++G  V++T H ++     C ++  +  G   
Sbjct: 173 VILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVF 232

Query: 557 CLGSATHL 564
             GS+   
Sbjct: 233 YDGSSQQF 240

Length = 262

>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter

 Score = 68.5 bits (168), Expect = 5e-14
 Identities = 34/87 (39%), Positives = 46/87 (52%), Gaps = 6/87 (6%)

Query: 34  IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDRE-VRTLS 92
           IG   Q   L   LT RE+L F      +     +    E+L +  L  + DRE V TLS
Sbjct: 38  IGVVFQDPQLFPELTVRENLFF-----GLRDKEADARAEEALERVGLPDFLDREPVGTLS 92

Query: 93  GGNKRKLSTAIALLGNPPLIFLDEPTS 119
           GG K++++ A ALL  P L+ LDEPT+
Sbjct: 93  GGQKQRVAIARALLKKPKLLLLDEPTA 119

ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119

>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit

 Score = 70.1 bits (172), Expect = 6e-14
 Identities = 26/81 (32%), Positives = 47/81 (58%)

Query: 71  VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW 130
           V E+L         +R    LSGG K++++ A A+   P ++ LDEPT+G+DP  R  + 
Sbjct: 108 VREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQML 167

Query: 131 TCIERAVSEGRCVILTSHNME 151
             + R  +EG  V++++H+++
Sbjct: 168 AILRRLRAEGMTVVISTHDVD 188

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190

>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional

 Score = 74.1 bits (182), Expect = 6e-14
 Identities = 55/229 (24%), Positives = 95/229 (41%), Gaps = 41/229 (17%)

Query: 362 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH--SIRDSMDLVRS 419
           V  ISF V RGE  G  GL G+G+T     L G  K   G   +     S R  +D V+ 
Sbjct: 279 VRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKK 338

Query: 420 YIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLN----KFALGHYSDRE- 474
            + Y  +          R    F+       S+  N  ++ SL     K A+G + + + 
Sbjct: 339 GMAYITE---------SRRDNGFFPNF----SIAQNMAISRSLKDGGYKGAMGLFHEVDE 385

Query: 475 ---------------------VRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR 513
                                +  LSGGN++K+  +  L   P +I  DEPT G+D GA+
Sbjct: 386 QRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAK 445

Query: 514 RFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSAT 562
             ++  + +   +G+ +++ S  + E   +C ++ +   G+ T + +  
Sbjct: 446 AEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTNR 494

Length = 510

>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional

 Score = 71.7 bits (176), Expect = 6e-14
 Identities = 55/204 (26%), Positives = 98/204 (48%), Gaps = 6/204 (2%)

Query: 351 IYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 410
           +YA+  G KPA+  I+  +  GE   +LG +G GKTT   ++ G +    G+  +    +
Sbjct: 7   LYADYGG-KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPV 65

Query: 411 RDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHY 470
                   +  G   Q + L      ++++ F  ++  V  +    I ++ L K  L   
Sbjct: 66  EGP----GAERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGA 121

Query: 471 SDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRC 529
             R +  LSGG ++++  A AL  NP L+ LDEP   +D   R  + T + +   E G+ 
Sbjct: 122 EKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQ 181

Query: 530 VILTSHNMEECEALCTKLTIMVNG 553
           V+L +H++EE   + T+L ++  G
Sbjct: 182 VLLITHDIEEAVFMATELVLLSPG 205

Length = 255

>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 71.0 bits (174), Expect = 8e-14
 Identities = 58/219 (26%), Positives = 96/219 (43%), Gaps = 16/219 (7%)

Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS------- 409
           G   A+  I+     GE   LLG +GAGK++  ++L     P SG   +  +        
Sbjct: 13  GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTP 72

Query: 410 ----IRDSMDLVRSYIGYCPQFDALNDRLTPREHL-EFYSRVRNVPSVLLNTIVNESLNK 464
               IRD    +R  +G   Q   L   LT +E+L E   RV  +          + L +
Sbjct: 73  SDKAIRD----LRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKR 128

Query: 465 FALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAV 524
             L  Y+DR    LSGG +++++ A AL+  P ++  DEPT+ +DP     + + I+   
Sbjct: 129 LRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELA 188

Query: 525 SEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATH 563
             G   ++ +H +E      +++  M NG     G A+ 
Sbjct: 189 ETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC 227

Length = 242

>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional

 Score = 72.1 bits (178), Expect = 9e-14
 Identities = 63/221 (28%), Positives = 105/221 (47%), Gaps = 19/221 (8%)

Query: 346 KRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 405
           K + K++     T  A+N +S  +  GE FG++G +GAGK+T  + +    +PTSG   V
Sbjct: 5   KNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLV 64

Query: 406 MNHSIRDSMDLV----------RSYIGYCPQ-FDALNDRLTPREHLEFYSRVRNVPSVLL 454
                 D  DL           R  IG   Q F+ L+ R T  +++     +   P   +
Sbjct: 65  ------DGQDLTALSEKELRKARRQIGMIFQHFNLLSSR-TVFDNVALPLELAGTPKAEI 117

Query: 455 NTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARR 514
              V E L    L   +DR    LSGG K++++ A AL  NP ++  DE TS +DP   R
Sbjct: 118 KARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTR 177

Query: 515 FLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQ 554
            +   ++    E G  ++L +H M+  + +C ++ ++  G+
Sbjct: 178 SILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGR 218

Length = 343

>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA

 Score = 70.4 bits (173), Expect = 1e-13
 Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 1/121 (0%)

Query: 47  LTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALL 106
           L   +     + + ++P       ++E      L    D  VR LS G + +   A ALL
Sbjct: 110 LPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALL 169

Query: 107 GNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVN 165
             P ++FLDEPT G+D  A+  +   ++    E G  V+LTSH M++ EAL  ++ ++  
Sbjct: 170 HEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDK 229

Query: 166 G 166
           G
Sbjct: 230 G 230

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score = 72.9 bits (180), Expect = 1e-13
 Identities = 27/85 (31%), Positives = 50/85 (58%)

Query: 85  DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVI 144
           ++ + TLSGGN++K+  A  L  +P ++ LDEPT G+D GA+  ++  I    +EG+ ++
Sbjct: 396 EQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAIL 455

Query: 145 LTSHNMEECEALCTKLTIMVNGQFT 169
           + S  + E   L  ++ +M  G+  
Sbjct: 456 MISSELPELLGLSDRILVMREGRIV 480

Length = 500

>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters

 Score = 69.9 bits (172), Expect = 1e-13
 Identities = 50/204 (24%), Positives = 87/204 (42%), Gaps = 22/204 (10%)

Query: 345 VKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 404
           +K L K +    G    +  I   V +GE   ++G +G+GK+T  + +    +P SG   
Sbjct: 3   IKNLHKSF----GDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTII 58

Query: 405 VMNHSIRDS---MDLVRSYIGYC-------PQFDAL-NDRLTPREHLEFYSRVRNVPSVL 453
           +    + D    ++ +R  +G         P    L N  L P        +V+ +    
Sbjct: 59  IDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPI-------KVKGMSKAE 111

Query: 454 LNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR 513
                 E L K  L   +D     LSGG +++++ A AL  NP ++  DEPTS +DP   
Sbjct: 112 AEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELV 171

Query: 514 RFLWTCIERAVSEGRCVILTSHNM 537
             +   ++    EG  +++ +H M
Sbjct: 172 GEVLDVMKDLAEEGMTMVVVTHEM 195

HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213

>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 71.3 bits (174), Expect = 1e-13
 Identities = 57/216 (26%), Positives = 97/216 (44%), Gaps = 7/216 (3%)

Query: 354 NSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG-----NAYVMNH 408
           NS     A+  I   V +G    L+G  G+GK+T  + L G ++PT G     +  V + 
Sbjct: 14  NSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSST 73

Query: 409 SIRDSMDLVRSYIGYCPQF-DALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFAL 467
           S +  +  VR  +G   QF ++     T  + + F  +   +P      I  E L    L
Sbjct: 74  SKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGL 133

Query: 468 G-HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE 526
              + ++    LSGG  R+++ A  L   P ++ LDEPT+G+DP AR  +    E     
Sbjct: 134 ADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQS 193

Query: 527 GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSAT 562
           G+ V+L +H M++       + ++  G     G+ +
Sbjct: 194 GQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPS 229

Length = 288

>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

 Score = 70.3 bits (172), Expect = 1e-13
 Identities = 55/212 (25%), Positives = 94/212 (44%), Gaps = 27/212 (12%)

Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD--SM 414
           G   A++++S  + +GE   L+G NGAGKTT    L G  + TSG        I D  + 
Sbjct: 16  GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTA 75

Query: 415 DLVRSYIGYCPQFDALNDRLTPREHL----------EFYSRVRNVPSVLLNTIVNESLNK 464
            ++R  +   P+   +  R+T  E+L          +F  R++ V  +            
Sbjct: 76  KIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRL-------- 127

Query: 465 FALGHYSDREVR--TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER 522
                +  R  R  T+SGG ++ L+   AL+  P L+ LDEP+ G+ P   + ++  IE+
Sbjct: 128 -----HERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQ 182

Query: 523 AVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 554
              +G  + L   N  +   L  +  ++ NG 
Sbjct: 183 LREQGMTIFLVEQNANQALKLADRGYVLENGH 214

Length = 237

>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C

 Score = 69.9 bits (172), Expect = 1e-13
 Identities = 50/199 (25%), Positives = 85/199 (42%), Gaps = 34/199 (17%)

Query: 356 KGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SM 414
              KP +  I+F +  GE   ++G  GAGKTT   +L     P  G   +    IRD S 
Sbjct: 13  DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISR 72

Query: 415 DLVRSYIGYCPQ---------FD--ALNDRLTPREHLEFYSR-------VRNVPSVLLNT 456
             +RS IG   Q          +   L       E +   ++       +  +P+   +T
Sbjct: 73  KSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNG-YDT 131

Query: 457 IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFL 516
           ++ E+      G         LS G ++ L+ A A+L +P ++ LDE TS +D    + +
Sbjct: 132 VLGEN------GG-------NLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLI 178

Query: 517 WTCIERAVSEGRCVILTSH 535
              +E+ + +GR  I+ +H
Sbjct: 179 QEALEK-LMKGRTSIIIAH 196

Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229

>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

 Score = 70.2 bits (173), Expect = 2e-13
 Identities = 57/218 (26%), Positives = 94/218 (43%), Gaps = 17/218 (7%)

Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDL 416
           G K  +  IS  V +GE   ++G +G+GK+T  + L G  +P SG+  V    + D  D+
Sbjct: 13  GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDI 72

Query: 417 --VRSYIGYCPQ----F---DAL-NDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFA 466
             +R  +G   Q    F     L N  L P        +V+ +          E L K  
Sbjct: 73  LKLRRKVGMVFQQFNLFPHLTVLENVTLAPV-------KVKKLSKAEAREKALELLEKVG 125

Query: 467 LGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE 526
           L   +D     LSGG +++++ A AL  +P ++  DEPTS +DP     +   ++    E
Sbjct: 126 LADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEE 185

Query: 527 GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
           G  +I+ +H M     +  ++  M  G+    G     
Sbjct: 186 GMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEF 223

Length = 240

>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK

 Score = 70.2 bits (172), Expect = 2e-13
 Identities = 63/236 (26%), Positives = 97/236 (41%), Gaps = 35/236 (14%)

Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
           +L V  L K Y   KG       +SF +  GE  G++G +G+GK+T    L G + P  G
Sbjct: 3   LLQVSGLSKSYGGGKG----CRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHG 58

Query: 402 NAYVMNHSIR----------DSMDLVRSYIGYCPQFDALNDRLTPREHLEF-YSRVRNVP 450
            A  +  S            +   L+R+  G+  Q         PR+ L    S   N+ 
Sbjct: 59  TATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQ--------NPRDGLRMRVSAGANIG 110

Query: 451 SVLLNTIVNESLNKFALGHYSDREV-----------RTLSGGNKRKLSTAIALLGNPPLI 499
             L+        N  A       EV           R  SGG +++L  A  L+  P L+
Sbjct: 111 ERLMAIGARHYGNIRATAQDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLV 170

Query: 500 FLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQ 554
           F+DEPT G+D   +  L   +   V + G  VI+ +H++     L  +L +M  G+
Sbjct: 171 FMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGR 226

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253

>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 70.0 bits (171), Expect = 2e-13
 Identities = 58/225 (25%), Positives = 98/225 (43%), Gaps = 25/225 (11%)

Query: 349 FKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNA 403
            + ++   G K AV  ++  + + +   ++G +G GKTT  + +             G  
Sbjct: 6   IENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKI 65

Query: 404 YVMNHSIRDSMD---LVRSYIGYCPQFDALNDRLTP-----REHLEFYSRVRNVPSV-LL 454
           Y     I D        R  +G   Q      + TP      +++ F  R+  V S   L
Sbjct: 66  YFKGQDIYDPQLDVTEYRKKVGMVFQ------KPTPFPMSIYDNVAFGPRIHGVKSKHKL 119

Query: 455 NTIVNESLNKFAL----GHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDP 510
           + IV ESL K AL        ++    LSGG +++L  A AL   P +I LDEPTS +DP
Sbjct: 120 DRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDP 179

Query: 511 GARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQF 555
            A + +   +E  +SE   +++ +HN+ +   +   +  M  G+ 
Sbjct: 180 IATQRIEKLLEE-LSENYTIVIVTHNIGQAIRIADYIAFMYRGEL 223

Length = 250

>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional

 Score = 72.5 bits (179), Expect = 2e-13
 Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 19/140 (13%)

Query: 371 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDAL 430
            GE  G++G NG GKTT  K+L G +KP  G    ++  ++         I Y PQ+   
Sbjct: 364 EGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGE---VDPELK---------ISYKPQY--- 408

Query: 431 NDRLTPREHLEFYSRVRNVPSVLLNTIVN-ESLNKFALGHYSDREVRTLSGGNKRKLSTA 489
              + P         +R++   L ++    E +    L    D+ V+ LSGG  ++++ A
Sbjct: 409 ---IKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIA 465

Query: 490 IALLGNPPLIFLDEPTSGMD 509
             L  +  L  LDEP++ +D
Sbjct: 466 ACLSRDADLYLLDEPSAHLD 485

Length = 590

>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 70.5 bits (173), Expect = 3e-13
 Identities = 34/96 (35%), Positives = 50/96 (52%), Gaps = 9/96 (9%)

Query: 88  VRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGA----RRFL-WTCIERAVSEGRC 142
           VR LS G + +   A ALL  P ++FLDEPT G+D  A    R FL     ER  +    
Sbjct: 154 VRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQAT---- 209

Query: 143 VILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 178
           V+LT+H  ++   LC ++ ++  GQ    G+   L+
Sbjct: 210 VLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQ 245

Length = 325

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score = 71.4 bits (176), Expect = 3e-13
 Identities = 58/230 (25%), Positives = 95/230 (41%), Gaps = 19/230 (8%)

Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
           VL V+ L  +         AV  +SF V  GE  G+ G+ G G++   + ++G  KP SG
Sbjct: 257 VLEVEDL-SVKDRRGV--TAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASG 313

Query: 402 NAYVMNHSIR---DSMDLVRSYIGYCPQFDALNDRLTPREHLEF---YSRVRNVPSVLLN 455
              +    +       +  R  + Y P+ D     L     L       R    P     
Sbjct: 314 RILLNGKDVLGRLSPRERRRLGLAYVPE-DRHGHGLVLDLSLAENLVLGRHDKKPFSRGG 372

Query: 456 TIVNESLNKFALG---HYSDR------EVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTS 506
            +   ++ KFA      +  R        R+LSGGN++KL  A  L   P L+   +PT 
Sbjct: 373 FLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTR 432

Query: 507 GMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFT 556
           G+D GA  F+   +      G+ V+L S +++E   L  ++ ++  G+  
Sbjct: 433 GLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIV 482

Length = 501

>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 69.4 bits (170), Expect = 3e-13
 Identities = 50/219 (22%), Positives = 89/219 (40%), Gaps = 7/219 (3%)

Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
           ++ V  L K     +G    +  +   V RGE   ++G +G+GK+T   +L G   P+SG
Sbjct: 6   IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSG 65

Query: 402 NAYVMNHSIRD-----SMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNT 456
              ++   +          L   ++G+  Q   L   LT  E++     +R   S     
Sbjct: 66  EVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRA 125

Query: 457 IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPG-ARRF 515
                L    LG         LSGG +++++ A A  G P ++F DEPT  +D     + 
Sbjct: 126 GAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKI 185

Query: 516 LWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 554
                      G  ++L +H+  +  A C +   + +G+
Sbjct: 186 ADLLFALNRERGTTLVLVTHD-PQLAARCDRQLRLRSGR 223

Length = 228

>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems

 Score = 67.2 bits (165), Expect = 4e-13
 Identities = 25/78 (32%), Positives = 50/78 (64%), Gaps = 1/78 (1%)

Query: 91  LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHN 149
           LSGG +++++ A AL  +P ++ LDEPTS +DP  RR +   ++   ++ G  V+L +H+
Sbjct: 101 LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHD 160

Query: 150 MEECEALCTKLTIMVNGQ 167
           ++E   L  ++ ++ +G+
Sbjct: 161 LDEAARLADRVVVLRDGK 178

This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178

>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional

 Score = 70.5 bits (173), Expect = 4e-13
 Identities = 51/181 (28%), Positives = 90/181 (49%), Gaps = 19/181 (10%)

Query: 341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS 400
           + +V+K + K +    G+   ++ ++  + +G    LLG +G GKTT  +++ G  KPT 
Sbjct: 5   NFVVLKNITKRF----GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTE 60

Query: 401 GNAY-----VMNHSI--RDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVL 453
           G  +     V + SI  RD   + +SY        AL   ++  E++ +  ++  VP   
Sbjct: 61  GQIFIDGEDVTHRSIQQRDICMVFQSY--------ALFPHMSLGENVGYGLKMLGVPKEE 112

Query: 454 LNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR 513
               V E+L    L  + DR V  +SGG +++++ A AL+  P ++  DEP S +D   R
Sbjct: 113 RKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLR 172

Query: 514 R 514
           R
Sbjct: 173 R 173

Length = 351

>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system

 Score = 68.3 bits (168), Expect = 5e-13
 Identities = 40/134 (29%), Positives = 69/134 (51%)

Query: 34  IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSG 93
           IGY PQ  ++  +LT  E++     +R +        + E L +F + H    +  +LSG
Sbjct: 77  IGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSG 136

Query: 94  GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEEC 153
           G +R++  A AL  NP  + LDEP +G+DP A + +   I+     G  V++T HN+ E 
Sbjct: 137 GERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRET 196

Query: 154 EALCTKLTIMVNGQ 167
            ++  +  I+  G+
Sbjct: 197 LSITDRAYIIYEGK 210

The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232

>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 68.8 bits (169), Expect = 5e-13
 Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 1/96 (1%)

Query: 73  ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPG-ARRFLWT 131
           E L    LG  +DR    LS G +R+L  A AL   P L+ LDEP +G++P         
Sbjct: 132 ELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAEL 191

Query: 132 CIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 167
             E     G  ++L  H+M+    L  ++ ++  G+
Sbjct: 192 IRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGE 227

Length = 250

>gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional

 Score = 69.1 bits (169), Expect = 5e-13
 Identities = 54/236 (22%), Positives = 103/236 (43%), Gaps = 31/236 (13%)

Query: 327 RKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKT 386
           R  +ER++      D L+ K       +   T  A++ IS     G+  GL+G+NG+GK+
Sbjct: 18  RTNKERMK------DALIPK-------HKNKTFFALDDISLKAYEGDVIGLVGINGSGKS 64

Query: 387 TTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRV 446
           T   ++ G++ PT G        +  + ++    I        L+ +LT  E++EF    
Sbjct: 65  TLSNIIGGSLSPTVGK-------VDRNGEVSVIAIS-----AGLSGQLTGIENIEFKMLC 112

Query: 447 RNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTS 506
                  +  +  + +    LG +  + V+  S G + KL  +I +  NP ++ +DE  S
Sbjct: 113 MGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALS 172

Query: 507 GMDPGARRFLWTCIERAV---SEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLG 559
               G + F   C+++      + + +   SHN+ +    CTK+  +  G+    G
Sbjct: 173 ---VGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYG 225

Length = 264

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 71.2 bits (175), Expect = 6e-13
 Identities = 43/140 (30%), Positives = 62/140 (44%), Gaps = 19/140 (13%)

Query: 371 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDAL 430
            GE  G+LG NG GKTT  K+L G IKP  G             DL    + Y PQ+ + 
Sbjct: 366 DGEVIGILGPNGIGKTTFVKLLAGVIKPDEG----------SEEDLK---VSYKPQYISP 412

Query: 431 NDRLTPREHLEFYSRVRNVPSVLLNT-IVNESLNKFALGHYSDREVRTLSGGNKRKLSTA 489
           +   T  + L        + S   ++    E +    L    +R V  LSGG  ++++ A
Sbjct: 413 DYDGTVEDLLR-----SAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIA 467

Query: 490 IALLGNPPLIFLDEPTSGMD 509
            AL     L  LDEP++ +D
Sbjct: 468 AALSREADLYLLDEPSAYLD 487

Length = 591

>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

 Score = 70.5 bits (173), Expect = 7e-13
 Identities = 28/85 (32%), Positives = 50/85 (58%)

Query: 85  DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVI 144
           ++  RTLSGGN++K+  A  L  +P L+ +DEPT G+D  AR  ++  I    ++   V+
Sbjct: 398 EQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVL 457

Query: 145 LTSHNMEECEALCTKLTIMVNGQFT 169
             S ++EE E +  ++ +M  G+ +
Sbjct: 458 FISSDLEEIEQMADRVLVMHQGEIS 482

Length = 510

>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA

 Score = 67.0 bits (164), Expect = 8e-13
 Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 7/137 (5%)

Query: 12  TLLLTTQKVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIV 71
            +      +        +N+ Y+G+ P    L   L+  E+L F++ +           +
Sbjct: 56  EVRWNGTALAEQRDEPHRNILYLGHLP---GLKPELSALENLHFWAAIHGGAQ----RTI 108

Query: 72  NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT 131
            ++L    L  + D     LS G +R+L+ A   L   PL  LDEPT+ +D      L  
Sbjct: 109 EDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAG 168

Query: 132 CIERAVSEGRCVILTSH 148
            +   ++ G  V+LT+H
Sbjct: 169 LLRAHLARGGIVLLTTH 185

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198

>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters

 Score = 66.9 bits (164), Expect = 8e-13
 Identities = 35/123 (28%), Positives = 52/123 (42%), Gaps = 30/123 (24%)

Query: 27  IDKNLS-YIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSD 85
           +DKN     GY  Q D  +  LT RE L F        S LL                  
Sbjct: 73  LDKNFQRSTGYVEQQDVHSPNLTVREALRF--------SALL------------------ 106

Query: 86  REVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL 145
              R LS   +++L+  + L   P ++FLDEPTSG+D  A   +   +++    G+ ++ 
Sbjct: 107 ---RGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILC 163

Query: 146 TSH 148
           T H
Sbjct: 164 TIH 166

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192

>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 68.0 bits (167), Expect = 1e-12
 Identities = 41/137 (29%), Positives = 70/137 (51%), Gaps = 3/137 (2%)

Query: 34  IGYCPQFDALNDRLTPREHLEFYSRV-RNVPSVLLNTIVNESLNKFAL-GHYSDREVRTL 91
           +G   Q  AL   LT  E++ F  R    +P  L+  +V   L    L G  +D     L
Sbjct: 87  MGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSEL 146

Query: 92  SGGNKRKLSTAIALLGNPPLIFLDEPTSGMDP-GARRFLWTCIERAVSEGRCVILTSHNM 150
           SGG +++++ A A+  +P L+FLDEPTSG+DP  A        E   + G  VI+ +H++
Sbjct: 147 SGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDL 206

Query: 151 EECEALCTKLTIMVNGQ 167
           +    +  ++ ++ +G+
Sbjct: 207 DSLLTIADRVAVLADGK 223

Length = 263

>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 66.3 bits (163), Expect = 1e-12
 Identities = 28/78 (35%), Positives = 46/78 (58%)

Query: 91  LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 150
           LSGGN++K+  A  L  +P ++ LDEPT G+D GA+  ++  I      G+ V+L S  +
Sbjct: 105 LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSEL 164

Query: 151 EECEALCTKLTIMVNGQF 168
           +E   LC ++ +M  G+ 
Sbjct: 165 DELLGLCDRILVMYEGRI 182

This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182

>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional

 Score = 69.9 bits (172), Expect = 1e-12
 Identities = 58/217 (26%), Positives = 102/217 (47%), Gaps = 31/217 (14%)

Query: 360 PAVNQ-ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH--SIRDSMDL 416
           P + + ISF V  GE  GL GL GAG++   K+L GA + T+G  Y+      IR   D 
Sbjct: 266 PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDA 325

Query: 417 VRSYIGYCPQFDALNDRLTP----REHLEFYSRVRNVPSVLLNTIVNESLNKFALGHY-- 470
           +R+ I  CP+ D   + + P     +++   +R  ++       ++N          +  
Sbjct: 326 IRAGIMLCPE-DRKAEGIIPVHSVADNINISARRHHLR---AGCLINNRWEAENADRFIR 381

Query: 471 --------SDREVRTLSGGNKRKLSTAIALLG-----NPPLIFLDEPTSGMDPGARRFLW 517
                    ++ +  LSGGN++K     A+LG     +  +I LDEPT G+D GA+  ++
Sbjct: 382 SLNIKTPSREQLIMNLSGGNQQK-----AILGRWLSEDMKVILLDEPTRGIDVGAKHEIY 436

Query: 518 TCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 554
             I    ++G  V+  S ++ E   +  ++ +M  G+
Sbjct: 437 NVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGR 473

Length = 501

>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor

 Score = 67.8 bits (166), Expect = 1e-12
 Identities = 40/139 (28%), Positives = 62/139 (44%), Gaps = 15/139 (10%)

Query: 371 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDAL 430
             E  G+LG NG GKTT  KML G +KP  G+            ++    + Y PQ+   
Sbjct: 24  ESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDI-----------EIELDTVSYKPQYIKA 72

Query: 431 NDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAI 490
           +   T R+ L   S  ++  +        E      +    DREV  LSGG  ++++ A 
Sbjct: 73  DYEGTVRDLL--SSITKDFYTH--PYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAA 128

Query: 491 ALLGNPPLIFLDEPTSGMD 509
            L  +  +  LDEP++ +D
Sbjct: 129 CLSKDADIYLLDEPSAYLD 147

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246

>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein

 Score = 67.9 bits (166), Expect = 1e-12
 Identities = 53/215 (24%), Positives = 97/215 (45%), Gaps = 5/215 (2%)

Query: 355 SKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM 414
           S G +  V+ +      G   GLLG NG+GK+T  ++L GA++P +G   +    +    
Sbjct: 10  SAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLS 69

Query: 415 DLVRS-YIGYCPQFDALNDRLTPREHLEF----YSRVRNVPSVLLNTIVNESLNKFALGH 469
              R+  +    Q       LT R+ +      +  +    S     +V+ +L +  L H
Sbjct: 70  RRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSH 129

Query: 470 YSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC 529
            +DR++ TLSGG ++++  A AL   P L+ LDEPT+ +D  A+      +    + G  
Sbjct: 130 LADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVT 189

Query: 530 VILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
           V+   H++    + C  + ++  G+    G    +
Sbjct: 190 VVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREV 224

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256

>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 69.9 bits (172), Expect = 1e-12
 Identities = 59/216 (27%), Positives = 96/216 (44%), Gaps = 28/216 (12%)

Query: 360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVR 418
           P +  +S  +  GE   LLG  G GK+T  ++LT A  P  G   +    I D S   +R
Sbjct: 354 PVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALR 413

Query: 419 SYIGYCPQ-FDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREV-- 475
             I    Q     +  L  R++L   +     P+     ++ E L +  L    + +   
Sbjct: 414 QAISVVSQRVHLFSATL--RDNLLLAA-----PNASDEALI-EVLQQVGLEKLLEDDKGL 465

Query: 476 --------RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEG 527
                   R LSGG +R+L  A ALL + PL+ LDEPT G+D    R +   +    ++ 
Sbjct: 466 NAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELL-AEHAQN 524

Query: 528 RCVILTSHN---MEECEALCTKLTIMVNGQFTCLGS 560
           + V++ +H    +E+ + +C    +M NGQ    G+
Sbjct: 525 KTVLMITHRLTGLEQFDRIC----VMDNGQIIEQGT 556

Length = 574

>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only]

 Score = 66.8 bits (164), Expect = 2e-12
 Identities = 43/143 (30%), Positives = 71/143 (49%), Gaps = 2/143 (1%)

Query: 34  IGYCPQFDALNDRLTPREHLEFYSRVRNV-PSVLLNTI-VNESLNKFALGHYSDREVRTL 91
           IGY PQ  ++  +LT  +++     +R            ++  L +F + H  D +  +L
Sbjct: 81  IGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSL 140

Query: 92  SGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 151
           SGG +R++  A AL  NP  I LDEP +G+DP A   +   I+     G  V++T HN+ 
Sbjct: 141 SGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR 200

Query: 152 ECEALCTKLTIMVNGQFTCLGSA 174
           E   +C +  I+ +G+    GS 
Sbjct: 201 ETLDICDRAYIISDGKVLAEGSP 223

Length = 243

>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

 Score = 66.2 bits (162), Expect = 2e-12
 Identities = 37/123 (30%), Positives = 57/123 (46%), Gaps = 6/123 (4%)

Query: 26  TIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSD 85
           +  + L Y+G+ P    +   LT  E+L F+ R     S    TI  E+L +  L    D
Sbjct: 72  SYHQALLYLGHQP---GIKTELTALENLHFWQRFHG--SGNAATIW-EALAQVGLAGLED 125

Query: 86  REVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL 145
             V  LS G +R+++ A   L   PL  LDEP + +D      L   +    ++G  V+L
Sbjct: 126 LPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLL 185

Query: 146 TSH 148
           T+H
Sbjct: 186 TTH 188

Length = 209

>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein

 Score = 69.3 bits (170), Expect = 2e-12
 Identities = 48/153 (31%), Positives = 70/153 (45%), Gaps = 10/153 (6%)

Query: 35  GYCPQFDALNDRLTPREHLEFYSRVR---NVPSVLLNTIVNESLNKFALGHYSD------ 85
            Y  Q D     LT REHL F + +R    V        V+E L    L   ++      
Sbjct: 102 AYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVP 161

Query: 86  REVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL 145
             V+ LSGG +++L+ A  LL +PPL+F DEPTSG+D      +   ++    +G+ +I 
Sbjct: 162 GRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIIC 221

Query: 146 TSHN-MEECEALCTKLTIMVNGQFTCLGSATHL 177
           T H    E   L  K+ +M  G+   LGS    
Sbjct: 222 TIHQPSSELFELFDKIILMAEGRVAYLGSPDQA 254

[Transport and binding proteins, Other]. Length = 617

>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 65.1 bits (160), Expect = 2e-12
 Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 9/79 (11%)

Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
           L ++ + K +    G   A++ +S  V RGE   LLG NGAGK+T  K+L+G  KP SG 
Sbjct: 1   LELRGITKRF----GGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGE 56

Query: 403 AY-----VMNHSIRDSMDL 416
                  V   S RD+   
Sbjct: 57  ILVDGKEVSFASPRDARRA 75

This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163

>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein

 Score = 65.6 bits (160), Expect = 3e-12
 Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 9/136 (6%)

Query: 13  LLLTTQKVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVN 72
           +LL    +     +I + L Y+G+ P    +   L+  E+L F+    +   V       
Sbjct: 57  VLLNGGPLDFQRDSIARGLLYLGHAP---GIKTTLSVLENLRFWHADHSDEQVE------ 107

Query: 73  ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTC 132
           E+L +  L  + DR V  LS G +R+++ A  LL   PL  LDEPT+ +D          
Sbjct: 108 EALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEA 167

Query: 133 IERAVSEGRCVILTSH 148
           +    + G  V+LT+H
Sbjct: 168 MAGHCARGGMVVLTTH 183

CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201

>gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional

 Score = 65.7 bits (160), Expect = 3e-12
 Identities = 43/157 (27%), Positives = 75/157 (47%), Gaps = 8/157 (5%)

Query: 379 GLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPRE 438
           G NG GK++  +M+ G ++P+SGN Y  N +I    ++ + Y  Y      L   +T  E
Sbjct: 33  GANGCGKSSLLRMIAGIMQPSSGNIYYKNCNIN---NIAKPYCTYIGHNLGLKLEMTVFE 89

Query: 439 HLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPL 498
           +L+F+S + N  S      +  +++ F L    D +  +LS G ++ ++ A  +     L
Sbjct: 90  NLKFWSEIYN--SA---ETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDL 144

Query: 499 IFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 535
             LDE  + +    R  L   I    + G  V+L+SH
Sbjct: 145 WLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSH 181

Length = 195

>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA

 Score = 69.0 bits (169), Expect = 3e-12
 Identities = 59/231 (25%), Positives = 101/231 (43%), Gaps = 37/231 (16%)

Query: 322 EEDDVRKERERVEHGADSGDVLVVKRLFKIYANSKGT-KPAVNQISFGVGRGECFGLLGL 380
           E+D   +  ER       GDV        +     G  +PA++ IS  +  GE   L+G 
Sbjct: 316 EKDTGTRAIERAR-----GDV----EFRNVTFRYPGRDRPALDSISLVIEPGETVALVGR 366

Query: 381 NGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSYIGYCPQ----FD---ALND 432
           +G+GK+T   ++    +P SG   +  H + D ++  +R  +    Q    F+   A N 
Sbjct: 367 SGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNI 426

Query: 433 RLTPREHLEFYSRVRNVP-----SVLLNTIVNESLNKFALGHYS---DREVRTLSGGNKR 484
                     Y R            L      + ++K  LG  +   +  V  LSGG ++
Sbjct: 427 A---------YGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVL-LSGGQRQ 476

Query: 485 KLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 535
           +L+ A ALL + P++ LDE TS +D  + R +   +ER + +GR  ++ +H
Sbjct: 477 RLAIARALLKDAPILILDEATSALDNESERLVQAALER-LMQGRTTLVIAH 526

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571

>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents

 Score = 65.6 bits (161), Expect = 4e-12
 Identities = 40/147 (27%), Positives = 68/147 (46%), Gaps = 2/147 (1%)

Query: 34  IGYCPQFDALNDRLTPREHLEFYSRV-RNVPSVLLNTIVNESLNKFALGHYSDREVRTLS 92
           +G   Q  AL D LT  E++ F  R    +    +  IV E L    L    D     LS
Sbjct: 79  MGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELS 138

Query: 93  GGNKRKLSTAIALLGNPPLIFLDEPTSGMDP-GARRFLWTCIERAVSEGRCVILTSHNME 151
           GG K++++ A AL  +P L+  DEPT+G+DP  +              G   I+ +H+++
Sbjct: 139 GGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD 198

Query: 152 ECEALCTKLTIMVNGQFTCLGSATHLK 178
              A+  ++ ++ +G+    G+   L+
Sbjct: 199 TAFAIADRIAVLYDGKIVAEGTPEELR 225

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional

 Score = 66.0 bits (161), Expect = 4e-12
 Identities = 47/173 (27%), Positives = 78/173 (45%), Gaps = 5/173 (2%)

Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
           +L    L K Y         ++ +SF +G GE   ++G +G+GK+T   +L G   PTSG
Sbjct: 5   LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSG 64

Query: 402 NAYVMNHSI-----RDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNT 456
           +       +         +L    +G+  QF  L    T  E++     +       +N+
Sbjct: 65  DVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINS 124

Query: 457 IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 509
              E L    L H ++     LSGG +++++ A AL+ NP L+  DEPT  +D
Sbjct: 125 RALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLD 177

Length = 233

>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 65.7 bits (161), Expect = 5e-12
 Identities = 39/134 (29%), Positives = 62/134 (46%), Gaps = 1/134 (0%)

Query: 34  IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSG 93
           IGY  Q DAL   LT  +++     +R            E L    L  + D+    LSG
Sbjct: 74  IGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSG 133

Query: 94  GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC-VILTSHNMEE 152
           G +++++ A AL   P L+ LDEP   +D   R  L   + R   E R  V+L +H+++E
Sbjct: 134 GMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDE 193

Query: 153 CEALCTKLTIMVNG 166
              L  ++ ++ N 
Sbjct: 194 AVYLADRVVVLSNR 207

Length = 248

>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 65.8 bits (160), Expect = 5e-12
 Identities = 62/250 (24%), Positives = 109/250 (43%), Gaps = 29/250 (11%)

Query: 333 VEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKML 392
           +E G  + DV  + RL+ +Y N K     +  I+  +     FG++G +G+GK+T  K+L
Sbjct: 1   MEAGKSAEDVFNISRLY-LYINDKAI---LKDITIKIPNNSIFGIMGPSGSGKSTLLKVL 56

Query: 393 TGAIKPTSGNAYVMNHSIRDSMDLVR-SYIGYCPQFDALNDRLTPREHLEFYSRVRNVPS 451
              I+       V    +    D+ +   I    +   +  +  P  HL  Y    N+  
Sbjct: 57  NRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYD---NIAY 113

Query: 452 VL----------LNTIVNESLNKFAL-GHYSDR---EVRTLSGGNKRKLSTAIALLGNPP 497
            L          +  IV E L K  L     DR       LSGG +++L+ A AL   P 
Sbjct: 114 PLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPK 173

Query: 498 LIFLDEPTSGMDPGARRFLWTCIERAVSEGR---CVILTSHNMEECEALCTKLTIMVNGQ 554
           ++ +DEPTS +D    +     IE+ ++E +    +++ SHN ++   +   +  + NG+
Sbjct: 174 VLLMDEPTSMIDIVNSQ----AIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGE 229

Query: 555 FTCLGSATHL 564
               GS+  +
Sbjct: 230 LVEWGSSNEI 239

Length = 257

>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 65.2 bits (159), Expect = 5e-12
 Identities = 45/191 (23%), Positives = 82/191 (42%), Gaps = 22/191 (11%)

Query: 364 QISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT---SGNAYVMNHSIRDSMDLVRSY 420
            ++F + +GE   L+G +G GK+T    + GA+      +G  ++    + D +   +  
Sbjct: 20  NVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRL-DMLPAAQRQ 78

Query: 421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTI--------VNESLNKFALGHYSD 472
           IG   Q   L   L+  ++L F          L  T+         N +L +  L     
Sbjct: 79  IGILFQDALLFPHLSVGQNLLF---------ALPATLKGNARRNAANAALERSGLDGAFH 129

Query: 473 REVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR-RFLWTCIERAVSEGRCVI 531
           ++  TLSGG + +++   ALL  P  + LDEP S +D   R +F         + G   +
Sbjct: 130 QDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTV 189

Query: 532 LTSHNMEECEA 542
             +H++++  A
Sbjct: 190 QVTHDLQDVPA 200

Length = 213

>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional

 Score = 68.1 bits (167), Expect = 5e-12
 Identities = 63/236 (26%), Positives = 94/236 (39%), Gaps = 43/236 (18%)

Query: 323 EDDVRKERERVEHGADSGDV--LVVKR--LFKIYANSKGTKPAVNQISFGVGRGECFGLL 378
           ED V   R+      D G V   V      F  Y NS+     V  +SF    G+   ++
Sbjct: 313 EDAVPDVRDP-PGAIDLGRVKGAVEFDDVSFS-YDNSR---QGVEDVSFEAKPGQTVAIV 367

Query: 379 GLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSYIGYCPQFDAL------- 430
           G  GAGK+T   +L     P SG   +    IR  +   +R  I    Q DA        
Sbjct: 368 GPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQ-DAGLFNRSIE 426

Query: 431 -NDRL-----TPREHLEFYSRVRNVPSVL-----LNTIVNESLNKFALGHYSDREVRTLS 479
            N R+     T  E      R +    +       +T+V E       G       R LS
Sbjct: 427 DNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGER------G-------RQLS 473

Query: 480 GGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 535
           GG +++L+ A ALL +PP++ LDE TS +D      +   ++  + +GR   + +H
Sbjct: 474 GGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALD-ELMKGRTTFIIAH 528

Length = 588

>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter

 Score = 65.1 bits (160), Expect = 6e-12
 Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 3/135 (2%)

Query: 34  IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKF-ALGHYSDREVRTLS 92
           IGY P+   +   LT  E+L   +  R          +      F  L     +   TLS
Sbjct: 77  IGYVPEGRRIFPELTVEENLLLGAYARRRAKR--KARLERVYELFPRLKERRKQLAGTLS 134

Query: 93  GGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEE 152
           GG ++ L+ A AL+  P L+ LDEP+ G+ P     ++  I     EG  ++L   N   
Sbjct: 135 GGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARF 194

Query: 153 CEALCTKLTIMVNGQ 167
              +  +  ++  G+
Sbjct: 195 ALEIADRAYVLERGR 209

LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222

>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group

 Score = 64.6 bits (158), Expect = 6e-12
 Identities = 35/120 (29%), Positives = 60/120 (50%)

Query: 32  SYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTL 91
             +GY  Q  AL +  T  E+L+   + + +          E+L K  L     +++  L
Sbjct: 76  EKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYEL 135

Query: 92  SGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 151
           SGG +++++ A A+L  PPLI  DEPT  +DP  R  +   +     EG+ +I+ +H+ E
Sbjct: 136 SGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE 195

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206

>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 65.5 bits (160), Expect = 6e-12
 Identities = 33/126 (26%), Positives = 61/126 (48%), Gaps = 1/126 (0%)

Query: 39  QFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRK 98
           Q +AL   L   +++ F  ++R +       I ++ L    L     + +  LSGG +++
Sbjct: 81  QNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQR 140

Query: 99  LSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTC-IERAVSEGRCVILTSHNMEECEALC 157
           +  A AL   P L+ LDEP   +D   R  +    ++     G+ V+L +H++EE   L 
Sbjct: 141 VGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLA 200

Query: 158 TKLTIM 163
           T+L ++
Sbjct: 201 TRLVVL 206

Length = 259

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score = 68.6 bits (168), Expect = 6e-12
 Identities = 57/194 (29%), Positives = 85/194 (43%), Gaps = 18/194 (9%)

Query: 355 SKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKML-----TGAIKPTSGNAYVMNHS 409
            K  +  +N +   V  G    L+G +GAGKTT   +L     TG I  T G+  V    
Sbjct: 772 KKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVI--TGGDRLVNGRP 829

Query: 410 IRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLL---NTIVNESLNKFA 466
           +  S    RS IGY  Q D      T RE L F + +R   SV        V E +    
Sbjct: 830 LDSSFQ--RS-IGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLE 886

Query: 467 LGHYSDREVRT----LSGGNKRKLSTAIALLGNPP-LIFLDEPTSGMDPGARRFLWTCIE 521
           +  Y+D  V      L+   +++L+  + L+  P  L+FLDEPTSG+D      +   + 
Sbjct: 887 MESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMR 946

Query: 522 RAVSEGRCVILTSH 535
           +    G+ ++ T H
Sbjct: 947 KLADHGQAILCTIH 960

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional

 Score = 65.9 bits (161), Expect = 6e-12
 Identities = 61/220 (27%), Positives = 99/220 (45%), Gaps = 10/220 (4%)

Query: 355 SKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI---- 410
           ++G +   + IS  V RG+   ++G +G GKTT  +++ G I P  G       +I    
Sbjct: 16  TRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMS 75

Query: 411 RDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVR-NVPSVLLNTIVNESLNKFALGH 469
           R  +  VR  +    Q  AL   +   +++ +  R    +P+ LL++ V   L    L  
Sbjct: 76  RSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRG 135

Query: 470 YSDREVRTLSGGNKRK--LSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCI-ERAVSE 526
            +      LSGG  R+  L+ AIAL   P LI  DEP  G DP     L   I E   + 
Sbjct: 136 AAKLMPSELSGGMARRAALARAIAL--EPDLIMFDEPFVGQDPITMGVLVKLISELNSAL 193

Query: 527 GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
           G   ++ SH++ E  ++     I+ + +    GSA  L++
Sbjct: 194 GVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQA 233

Length = 269

>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional

 Score = 67.6 bits (165), Expect = 7e-12
 Identities = 52/173 (30%), Positives = 87/173 (50%), Gaps = 11/173 (6%)

Query: 372 GECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALN 431
           GE   +LG +G+GK+T    L G I+  +    ++ ++ + +  +++   G+  Q D L 
Sbjct: 94  GEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKR-TGFVTQDDILY 152

Query: 432 DRLTPREHLEFYSRVRNVPSVL---LNTIVNES------LNKFALGHYSDREVRTLSGGN 482
             LT RE L F S +R +P  L      +V ES      L K       +  +R +SGG 
Sbjct: 153 PHLTVRETLVFCSLLR-LPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGE 211

Query: 483 KRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 535
           ++++S A  +L NP L+ LDEPTSG+D  A   L   +     +G+ ++ + H
Sbjct: 212 RKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMH 264

Length = 659

>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK

 Score = 64.6 bits (158), Expect = 8e-12
 Identities = 33/132 (25%), Positives = 65/132 (49%), Gaps = 1/132 (0%)

Query: 42  ALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLST 101
           AL   +T  +++ F  ++R VP   ++  V E      + H  DR+ + LSGG +++++ 
Sbjct: 82  ALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVAL 141

Query: 102 AIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKL 160
             A++  P +  +DEP S +D   R  +   ++R     G   I  +H+  E   +  ++
Sbjct: 142 GRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRI 201

Query: 161 TIMVNGQFTCLG 172
            +M +GQ   +G
Sbjct: 202 AVMNDGQIQQIG 213

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213

>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein

 Score = 64.8 bits (158), Expect = 8e-12
 Identities = 41/145 (28%), Positives = 69/145 (47%), Gaps = 1/145 (0%)

Query: 34  IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSG 93
           IG+  Q  AL   LT R+++ F   +R  P   +   V E L    L    DR    LSG
Sbjct: 74  IGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSG 133

Query: 94  GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCV-ILTSHNMEE 152
           G +++++ A AL   P ++ LDEP   +D   R+ L + + +   E     +  +H+ EE
Sbjct: 134 GQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEE 193

Query: 153 CEALCTKLTIMVNGQFTCLGSATHL 177
              +  ++ +M NG+   +GS   +
Sbjct: 194 AMEVADRIVVMSNGKIEQIGSPDEV 218

[Transport and binding proteins, Anions]. Length = 237

>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

 Score = 67.4 bits (165), Expect = 8e-12
 Identities = 57/221 (25%), Positives = 99/221 (44%), Gaps = 38/221 (17%)

Query: 359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG-----NAYVMNHS---- 409
           +P++  +SF + +GE  G+ GL GA +T   + L G  + ++G        + NH+    
Sbjct: 261 QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEA 320

Query: 410 IRDSMDLV---RSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSV-----LLNTI---- 457
           I     LV   R   G     D           + F S + N+ +      LL+      
Sbjct: 321 INHGFALVTEERRSTGIYAYLD-----------IGFNSLISNIRNYKNKVGLLDNSRMKS 369

Query: 458 ----VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR 513
               V +S+     GH +  ++ +LSGGN++K+     LL  P ++ LDEPT G+D GA+
Sbjct: 370 DTQWVIDSMRVKTPGHRT--QIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAK 427

Query: 514 RFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 554
             ++  I     + + +I+ S  M E   +  ++ +M NG 
Sbjct: 428 FEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGL 468

Length = 491

>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 65.2 bits (159), Expect = 8e-12
 Identities = 67/246 (27%), Positives = 104/246 (42%), Gaps = 55/246 (22%)

Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
           +L V  L K+Y   KG +     +SF +  GE  G++G +G+GKTT  K ++G + P +G
Sbjct: 6   LLSVSGLSKLYGPGKGCR----DVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAG 61

Query: 402 NA------------YVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNV 449
                         Y M+ + R    L+R+  G+  Q         PR+ L         
Sbjct: 62  TVTYRMRDGQPRDLYTMSEAERRR--LLRTEWGFVHQ--------NPRDGLR-------- 103

Query: 450 PSVLLNTIVNESLNKFALGHYSD---------REV-----------RTLSGGNKRKLSTA 489
             V     + E L      HY +          EV           RT SGG +++L  A
Sbjct: 104 MQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIA 163

Query: 490 IALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLT 548
             L+  P L+F+DEPT G+D   +  L   +   V E G  V++ +H++     L  +L 
Sbjct: 164 RNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLM 223

Query: 549 IMVNGQ 554
           +M  GQ
Sbjct: 224 VMKQGQ 229

Length = 258

>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional

 Score = 64.1 bits (157), Expect = 9e-12
 Identities = 39/149 (26%), Positives = 62/149 (41%), Gaps = 8/149 (5%)

Query: 5   TTPKRVVTLLLT----TQKVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVR 60
           TT  R++  LL     T K+ G +           Y    +A+   LT  E+LEF++   
Sbjct: 42  TTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFL 101

Query: 61  NVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSG 120
                     +  +L    L   +      LS G KR+++ A  L+ N P+  LDEPT+ 
Sbjct: 102 GGE----ELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAA 157

Query: 121 MDPGARRFLWTCIERAVSEGRCVILTSHN 149
           +D  A       I   +++G  VI  +H 
Sbjct: 158 LDAAAVALFAELIRAHLAQGGIVIAATHI 186

Length = 207

>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein

 Score = 63.7 bits (156), Expect = 1e-11
 Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 1/120 (0%)

Query: 33  YIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLS 92
           +IG+  Q   L   LT  E++E    +  VP         E L +  LG   +     LS
Sbjct: 83  HIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELS 142

Query: 93  GGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER-AVSEGRCVILTSHNME 151
           GG +++++ A AL  +P +I  DEPT  +D    + +   +       G  +++ +H+ E
Sbjct: 143 GGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE 202

This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score = 66.8 bits (164), Expect = 1e-11
 Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 2/87 (2%)

Query: 85  DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPG-ARRFLWTCIERAVSEGRCV 143
           D  V  LS   ++ +  A AL  +  ++ LDEPT+ +      R     I R  ++G  +
Sbjct: 140 DTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDL-IRRLKAQGVAI 198

Query: 144 ILTSHNMEECEALCTKLTIMVNGQFTC 170
           I  SH ++E   +  ++T++ +G+   
Sbjct: 199 IYISHRLDEVFEIADRITVLRDGRVVG 225

Length = 500

>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

 Score = 64.3 bits (157), Expect = 1e-11
 Identities = 49/203 (24%), Positives = 91/203 (44%), Gaps = 14/203 (6%)

Query: 369 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV--MNHSIRDSMDLVRSYIGYCPQ 426
           V  GE   +LG +GAGK+T   ++ G   P SG   +  ++H+     +   S +    Q
Sbjct: 22  VPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLF---Q 78

Query: 427 FDALNDRLTPREHLEFYSRVRNVPSVLLN----TIVNESLNKFALGHYSDREVRTLSGGN 482
            + L   LT  +++         P + LN      V  +  +  L  +  R    LSGG 
Sbjct: 79  ENNLFAHLTVAQNIGLGLS----PGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQ 134

Query: 483 KRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECE 541
           +++++ A  L+   P++ LDEP S +DP  R  +   + +   E    +++ +H+ E+  
Sbjct: 135 RQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAA 194

Query: 542 ALCTKLTIMVNGQFTCLGSATHL 564
            +  ++  + NG+    GS   L
Sbjct: 195 RIADRVVFLDNGRIAAQGSTQEL 217

Length = 231

>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD

 Score = 64.3 bits (157), Expect = 1e-11
 Identities = 52/209 (24%), Positives = 87/209 (41%), Gaps = 21/209 (10%)

Query: 361 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP----TSGNAYVMNHSIRDSMDL 416
            V  ++  + RGE   L+G +G+GK+ T   + G + P    TSG   +      D   L
Sbjct: 1   LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILL------DGRPL 54

Query: 417 ----VRS-YIGYCPQ--FDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGH 469
               +R  +I    Q    A N   T   H     R     S     ++ E+L    L  
Sbjct: 55  LPLSIRGRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPD 114

Query: 470 YS---DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR-RFLWTCIERAVS 525
                 +    LSGG  +++  A+ALL  PP +  DEPT+ +D   + R L    E    
Sbjct: 115 PEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQL 174

Query: 526 EGRCVILTSHNMEECEALCTKLTIMVNGQ 554
            G  ++L +H++     +  ++ +M +G+
Sbjct: 175 FGTGILLITHDLGVVARIADEVAVMDDGR 203

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230

>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters

 Score = 63.4 bits (155), Expect = 1e-11
 Identities = 36/157 (22%), Positives = 60/157 (38%), Gaps = 26/157 (16%)

Query: 356 KGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT---SGNAYVMNHSIRD 412
           +   P +   S  V  GE   +LG  G+G +T  K L    +      G+ +      ++
Sbjct: 17  RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKE 76

Query: 413 SMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSD 472
             +     I Y  + D     LT RE L+F  R +                        +
Sbjct: 77  FAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCKG-----------------------N 113

Query: 473 REVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 509
             VR +SGG ++++S A AL+    ++  D  T G+D
Sbjct: 114 EFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLD 150

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202

>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C

 Score = 63.6 bits (156), Expect = 1e-11
 Identities = 50/216 (23%), Positives = 88/216 (40%), Gaps = 39/216 (18%)

Query: 354 NSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS 413
             + T   +  I+  V +GE   ++G  G+GK++    L G ++  SG+  V        
Sbjct: 13  GEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGS----- 67

Query: 414 MDLVRSYIGYCPQFD-ALNDRLTPREHL--------EFYSRVRNVPSVLLNTIVNESLNK 464
                  I Y  Q     N   T RE++        E Y +V  + +  L       L  
Sbjct: 68  -------IAYVSQEPWIQNG--TIRENILFGKPFDEERYEKV--IKACALE----PDLEI 112

Query: 465 FALGHYSDR-EV----RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT- 518
              G   D  E+      LSGG K+++S A A+  +  +  LD+P S +D    R ++  
Sbjct: 113 LPDG---DLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFEN 169

Query: 519 CIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 554
           CI   +   +  IL +H ++       ++ ++ NG+
Sbjct: 170 CILGLLLNNKTRILVTHQLQLLPH-ADQIVVLDNGR 204

This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204

>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

 Score = 64.3 bits (157), Expect = 2e-11
 Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 2/99 (2%)

Query: 70  IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR-RF 128
                L      H +DR   +LS G +R++  A AL+ +P L+ LDEP  G+D  AR + 
Sbjct: 151 AAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQL 210

Query: 129 LWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNG 166
           L    E A S     ++  +H+ EE     T   ++  G
Sbjct: 211 LNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEG 249

Length = 257

>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional

 Score = 62.9 bits (154), Expect = 2e-11
 Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 6/119 (5%)

Query: 30  NLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVR 89
           +L Y+G+ P    +   LT  E+L FY R+        +  + E+L +  L  + D  VR
Sbjct: 75  DLLYLGHQP---GIKTELTALENLRFYQRLHGPGD---DEALWEALAQVGLAGFEDVPVR 128

Query: 90  TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 148
            LS G +R+++ A   L   PL  LDEP + +D      L   + +   +G  VILT+H
Sbjct: 129 QLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTH 187

Length = 204

>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 62.1 bits (152), Expect = 2e-11
 Identities = 25/77 (32%), Positives = 43/77 (55%)

Query: 91  LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 150
           LS G ++ +  A AL  N  L+ LDEPT+ + P     L+  I R  ++G  VI  SH +
Sbjct: 83  LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRL 142

Query: 151 EECEALCTKLTIMVNGQ 167
           +E   +  ++T++ +G+
Sbjct: 143 DEVFEIADRVTVLRDGR 159

This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163

>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 62.1 bits (152), Expect = 2e-11
 Identities = 25/77 (32%), Positives = 43/77 (55%)

Query: 478 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 537
           LS G ++ +  A AL  N  L+ LDEPT+ + P     L+  I R  ++G  VI  SH +
Sbjct: 83  LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRL 142

Query: 538 EECEALCTKLTIMVNGQ 554
           +E   +  ++T++ +G+
Sbjct: 143 DEVFEIADRVTVLRDGR 159

This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163

>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional

 Score = 66.8 bits (163), Expect = 2e-11
 Identities = 55/172 (31%), Positives = 83/172 (48%), Gaps = 18/172 (10%)

Query: 377  LLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS-----MDLVRSYIGYCPQFDALN 431
            L+G++GAGKTT   +L G  + T G  Y+    IR S      +      GYC Q D  +
Sbjct: 911  LMGVSGAGKTTLMDVLAG--RKTGG--YI-EGDIRISGFPKKQETFARISGYCEQNDIHS 965

Query: 432  DRLTPREHLEFYSRVR---NVPSVLLNTIVNESLNKFALGHYSDREV-----RTLSGGNK 483
             ++T RE L + + +R    V        V+E +    L +  D  V       LS   +
Sbjct: 966  PQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQR 1025

Query: 484  RKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 535
            ++L+ A+ L+ NP +IF+DEPTSG+D  A   +   +   V  GR V+ T H
Sbjct: 1026 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1077

Length = 1470

>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed

 Score = 64.0 bits (156), Expect = 2e-11
 Identities = 55/212 (25%), Positives = 94/212 (44%), Gaps = 4/212 (1%)

Query: 349 FKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 408
           FK  +   G    ++ I   + +GE   ++G +G+GK+T  + +    + TSG+  V   
Sbjct: 4   FKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGL 63

Query: 409 SIRD---SMDLVRSYIGYCPQFDALNDRLTPREHLEFYS-RVRNVPSVLLNTIVNESLNK 464
            + D      L+R   G   Q   L   LT  E++ F   RVR            E L K
Sbjct: 64  KVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAK 123

Query: 465 FALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAV 524
             L   +      LSGG +++++ A AL   P L+  DEPTS +DP  R  +   ++   
Sbjct: 124 VGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLA 183

Query: 525 SEGRCVILTSHNMEECEALCTKLTIMVNGQFT 556
            EG  +++ +H +   E + ++L  +  G+  
Sbjct: 184 EEGMTMVIVTHEIGFAEKVASRLIFIDKGRIA 215

Length = 240

>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein

 Score = 65.9 bits (161), Expect = 2e-11
 Identities = 57/232 (24%), Positives = 98/232 (42%), Gaps = 59/232 (25%)

Query: 360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR-DSMDLVR 418
           PA++ ++  V  GE   L+G +GAGK+T F++L     P SG        I  D +DL  
Sbjct: 354 PALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSG-------RILLDGVDLR- 405

Query: 419 SYIGYCPQFDALNDRLTPREHLEFYSRVRNVP--SVLLNTIVNESLNKFALGHYSDREVR 476
                  Q D       P E     +R+  VP   VL    V E++ ++     +D EV 
Sbjct: 406 -------QLD-------PAE---LRARMALVPQDPVLFAASVMENI-RYGRPDATDEEVE 447

Query: 477 ----------------------------TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGM 508
                                       TLSGG +++++ A A+L + P++ LDE TS +
Sbjct: 448 AAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSAL 507

Query: 509 DPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 560
           D  + + +   +E    +GR  ++ +H +        ++ +M  G+    G+
Sbjct: 508 DAESEQLVQQALETL-MKGRTTLIIAHRLATVLK-ADRIVVMDQGRIVAQGT 557

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576

>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters

 Score = 62.9 bits (154), Expect = 3e-11
 Identities = 32/142 (22%), Positives = 59/142 (41%), Gaps = 6/142 (4%)

Query: 32  SYIGYCPQ--FDALNDRLTPREHLE--FYSRVRNVPSVLLNTIVNESLNKFALG-HYSDR 86
             I    Q    +LN R+T  E +        +          V   L    L     +R
Sbjct: 82  KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNR 141

Query: 87  EVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVIL 145
               LSGG +++++ A AL  NP L+  DEPTS +D   +  +   +++   E G  ++ 
Sbjct: 142 YPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLF 201

Query: 146 TSHNMEECEALCTKLTIMVNGQ 167
            +H++     +  ++ +M  G+
Sbjct: 202 ITHDLGVVAKIADRVAVMYAGK 223

The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228

>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

 Score = 64.6 bits (158), Expect = 3e-11
 Identities = 38/134 (28%), Positives = 65/134 (48%), Gaps = 1/134 (0%)

Query: 34  IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSG 93
           I    Q  AL   +T  E++ F  ++R VP   ++  V E      L H  +R+   LSG
Sbjct: 77  IAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSG 136

Query: 94  GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAV-SEGRCVILTSHNMEE 152
           G +++++ A AL+  P +  LDEP S +D   R  + + I++     G   I  +H+  E
Sbjct: 137 GQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVE 196

Query: 153 CEALCTKLTIMVNG 166
              L  ++ +M +G
Sbjct: 197 AMTLADRIVVMNDG 210

Length = 338

>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein

 Score = 65.1 bits (159), Expect = 3e-11
 Identities = 41/161 (25%), Positives = 74/161 (45%), Gaps = 5/161 (3%)

Query: 34  IGYCPQFDALNDRLTPREHLEF-YSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLS 92
           IGY  Q   L   L+ R +L +   R R     +    V E L    +GH   R    LS
Sbjct: 77  IGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLG---IGHLLGRLPGRLS 133

Query: 93  GGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC-VILTSHNME 151
           GG K++++   ALL +P L+ +DEP + +D   +  +   +ER  +E    ++  SH+++
Sbjct: 134 GGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQ 193

Query: 152 ECEALCTKLTIMVNGQFTCLGSATHLKSKSMALPVSGNDLG 192
           E   L  ++ ++ +G+    G    + +      ++  D G
Sbjct: 194 EVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPWLAREDQG 234

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354

>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional

 Score = 63.8 bits (155), Expect = 3e-11
 Identities = 55/216 (25%), Positives = 90/216 (41%), Gaps = 28/216 (12%)

Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
           L V  L K Y    G    +  +S     G+   ++G +G+GK+T  + +    KP+ G+
Sbjct: 6   LNVIDLHKRY----GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGS 61

Query: 403 AYVMNHSIRDSMDLVRSYIGYCPQFDA-----LNDRLTPR-EHLEFYS------RVRNVP 450
             V   +I     LVR   G     D      L  RLT   +H   +S       V   P
Sbjct: 62  IVVNGQTIN----LVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAP 117

Query: 451 SVLLNTIVNES-------LNKFAL-GHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLD 502
             +L     E+       L K  +      +    LSGG ++++S A AL   P ++  D
Sbjct: 118 IQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFD 177

Query: 503 EPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 538
           EPTS +DP     +   +++   EG+ +++ +H M 
Sbjct: 178 EPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG 213

Length = 257

>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

 Score = 64.7 bits (158), Expect = 3e-11
 Identities = 62/214 (28%), Positives = 100/214 (46%), Gaps = 8/214 (3%)

Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
           L +  + K +    G   A+  IS  V +GE   LLG +G GKTT  +++ G  + T+G 
Sbjct: 5   LSIDNIRKRF----GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGT 60

Query: 403 AYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL 462
            Y     I       R Y G   Q  AL   LT  +++ +  + R +    +   V E L
Sbjct: 61  IYQGGRDITRLPPQKRDY-GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELL 119

Query: 463 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER 522
           +   L     +    LSGG +++++ A AL  +P L+ LDEP S +D   R  L T I R
Sbjct: 120 DLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEI-R 178

Query: 523 AVSE--GRCVILTSHNMEECEALCTKLTIMVNGQ 554
            +    G   I+ +H+ EE  ++  ++ +M +G 
Sbjct: 179 QLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGV 212

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353

>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C

 Score = 63.3 bits (154), Expect = 3e-11
 Identities = 47/196 (23%), Positives = 85/196 (43%), Gaps = 34/196 (17%)

Query: 361 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH--SIRDSMDLVR 418
            ++ IS  +  GE  G++G +G+GK+T  K++     P +G   V  H  ++ D   L R
Sbjct: 17  ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWL-R 75

Query: 419 SYIGYCPQFD-----------ALNDRLTPREHLEFYSRVRNVPSVLL------NTIVNES 461
             +G   Q +           AL D     E +   +++      +       +TIV E 
Sbjct: 76  RQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGE- 134

Query: 462 LNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIE 521
                      +    LSGG +++++ A AL+ NP ++  DE TS +D  +   +   + 
Sbjct: 135 -----------QGA-GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNM- 181

Query: 522 RAVSEGRCVILTSHNM 537
             +  GR VI+ +H +
Sbjct: 182 HDICAGRTVIIIAHRL 197

The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237

>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit

 Score = 62.6 bits (152), Expect = 5e-11
 Identities = 49/190 (25%), Positives = 88/190 (46%), Gaps = 12/190 (6%)

Query: 2   GLTTTPKRVVTLLLTTQ---KVPGSNPTIDKNLSYIGYCPQFDALN-DRLTPREHLEFYS 57
           G TT  + ++ L+   +   KV G++P   K   +IGY PQ      D      H     
Sbjct: 18  GKTTLLRAILGLIPPAKGTVKVAGASPG--KGWRHIGYVPQRHEFAWDFPISVAHTVMSG 75

Query: 58  RVRNV-----PSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLI 112
           R  ++     P V     V ++L +  L   +DR V  LSGG ++++  A AL   P ++
Sbjct: 76  RTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVL 135

Query: 113 FLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLG 172
            LDEP +G+D   +  L          G  +++T+H++ +  A C ++ +++NG+    G
Sbjct: 136 LLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRV-VLLNGRVIADG 194

Query: 173 SATHLKSKSM 182
           +   L+  + 
Sbjct: 195 TPQQLQDPAP 204

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223

>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 63.2 bits (153), Expect = 5e-11
 Identities = 49/198 (24%), Positives = 100/198 (50%), Gaps = 8/198 (4%)

Query: 362 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR-DSMDLVRSY 420
           +N +SF + +GE   ++G NG+GK+TT +++ G  +   G   +    +  +++  +R  
Sbjct: 23  LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRK 82

Query: 421 IGYCPQFDALNDRL---TPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRT 477
           IG    F   +++    T  + + F    + +P   +   V+E+L    +  +  RE   
Sbjct: 83  IGMV--FQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPAR 140

Query: 478 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILT-SHN 536
           LSGG K++++ A  +   P +I LDE TS +DP  R+ +   I     + +  +L+ +H+
Sbjct: 141 LSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHD 200

Query: 537 MEECEALCTKLTIMVNGQ 554
           ++E  A   ++ +M  G+
Sbjct: 201 LDEA-ASSDRILVMKAGE 217

Length = 277

>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 63.3 bits (154), Expect = 6e-11
 Identities = 54/221 (24%), Positives = 94/221 (42%), Gaps = 26/221 (11%)

Query: 352 YANSKGT---KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 408
           Y  S GT   K  ++ ISF +  G    L+G  G+GK+T  +     +KP+SG   +  +
Sbjct: 10  YIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGY 69

Query: 409 SI-----RDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNES-- 461
            I       ++  +R  +    QF        P   L   + +++V     N   +E   
Sbjct: 70  HITPETGNKNLKKLRKKVSLVFQF--------PEAQLFENTVLKDVEFGPKNFGFSEDEA 121

Query: 462 -------LNKFALGH-YSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR 513
                  L K  L      +    LSGG  R+++ A  +   P ++ LDEP +G+DP  R
Sbjct: 122 KEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGR 181

Query: 514 RFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 554
           + +    +     G  VIL +HNM++       + ++ +G+
Sbjct: 182 KEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGK 222

Length = 287

>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional

 Score = 62.0 bits (151), Expect = 6e-11
 Identities = 60/195 (30%), Positives = 93/195 (47%), Gaps = 24/195 (12%)

Query: 357 GTKPAVNQISFGVGRGECFGLL-GLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SM 414
           G    +N ISF +  GE F L+ G +G GK+T  K++   I PTSG        I     
Sbjct: 18  GDAKILNNISFSLRAGE-FKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKP 76

Query: 415 DLVRSYIGYCPQFDAL-NDRLTPREHLEFYSRVRNV---PSVLLNTIVNESLNKFALG-H 469
           ++ R  + YC Q   L  D  T  ++L F  ++RN    P++ L     + L +FAL   
Sbjct: 77  EIYRQQVSYCAQTPTLFGD--TVYDNLIFPWQIRNQQPDPAIFL-----DDLERFALPDT 129

Query: 470 YSDREVRTLSGGNKRKLSTAIALLGN----PPLIFLDEPTSGMDPGARRFLWTCIERAVS 525
              + +  LSGG K++    I+L+ N    P ++ LDE TS +D   +  +   I R V 
Sbjct: 130 ILTKNIAELSGGEKQR----ISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVR 185

Query: 526 E-GRCVILTSHNMEE 539
           E    V+  +H+ +E
Sbjct: 186 EQNIAVLWVTHDKDE 200

Length = 225

>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 63.3 bits (154), Expect = 7e-11
 Identities = 40/138 (28%), Positives = 64/138 (46%), Gaps = 11/138 (7%)

Query: 75  LNKFALGH-YSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCI 133
           LNK  L   Y +R    LSGG KR+++ A  L   P ++  DEPT+G+DP     +   I
Sbjct: 160 LNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLI 219

Query: 134 ERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS-------ATHLKSKSMALP- 185
             A +  + V + +H ME    +  ++ +M  G+    G+          + S S+ +P 
Sbjct: 220 LDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQHIINSTSIQVPR 279

Query: 186 --VSGNDLGRGDPVRSEL 201
                NDL + DP   +L
Sbjct: 280 VIQVINDLIKKDPKYKKL 297

Length = 320

>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 62.5 bits (152), Expect = 9e-11
 Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 1/104 (0%)

Query: 71  VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW 130
           V+ +L+   L    DR    LSGG K++++ A  +   P ++ LDEPT+G+DP   + L 
Sbjct: 118 VSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELI 177

Query: 131 TCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 173
             +       G  VI ++H ++    +   + +M  G+    G+
Sbjct: 178 DFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGT 221

Length = 277

>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family

 Score = 61.6 bits (150), Expect = 9e-11
 Identities = 51/196 (26%), Positives = 87/196 (44%), Gaps = 5/196 (2%)

Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
           V+ ++ L   Y +    K  +  I+  +  GE   L G +G+GKTT   ++ G      G
Sbjct: 1   VISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEG 60

Query: 402 NAYVMNHSI----RDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRV-RNVPSVLLNT 456
           +  V+   +       +  +R  IGY  Q   L   LT R++++    +  N+       
Sbjct: 61  SLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARE 120

Query: 457 IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFL 516
                L    LG + D     LSGG K++++ A AL+  P L+  DEPT+ +D  + R +
Sbjct: 121 RARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDV 180

Query: 517 WTCIERAVSEGRCVIL 532
              +++   E  C IL
Sbjct: 181 VELMQKLAREQGCTIL 196

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220

>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 62.1 bits (151), Expect = 1e-10
 Identities = 43/137 (31%), Positives = 68/137 (49%), Gaps = 6/137 (4%)

Query: 71  VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW 130
           VNE+L    +  + +RE   LSGG K++++ A A+   P +I LDE TS +DP  R  L 
Sbjct: 121 VNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELI 180

Query: 131 TCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKSMALPVSGN 189
             I+    +    VI  +H+++E  AL  ++ +M NGQ     +   L S+   L     
Sbjct: 181 KTIKGIRDDYQMTVISITHDLDEV-ALSDRVLVMKNGQVESTSTPRELFSRGNDL----L 235

Query: 190 DLGRGDPVRSELSRALN 206
            LG   P  + L ++L 
Sbjct: 236 QLGLDIPFTTSLVQSLR 252

Length = 279

>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

 Score = 61.7 bits (150), Expect = 1e-10
 Identities = 54/205 (26%), Positives = 90/205 (43%), Gaps = 14/205 (6%)

Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
           + VK L K +    G +  ++ I   V  GE   ++G +G+GKTT  + +    +P +G 
Sbjct: 4   IEVKNLVKKF---HG-QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGT 59

Query: 403 AYVMNHSIRDSMDL---------VRSYIGYCPQ-FDALNDRLTPREHLEFYSRVRNVPSV 452
             V + +I  +  L         +R ++G+  Q F+    R      +E    V+  P  
Sbjct: 60  IRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKE 119

Query: 453 LLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGA 512
                  E L K  L        R LSGG +++++ A AL   P +I  DEPTS +DP  
Sbjct: 120 EATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPEL 179

Query: 513 RRFLWTCIERAVSEGRCVILTSHNM 537
              +   I +   E R +++ +H M
Sbjct: 180 VGEVLNTIRQLAQEKRTMVIVTHEM 204

Length = 250

>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter

 Score = 64.0 bits (156), Expect = 1e-10
 Identities = 47/201 (23%), Positives = 94/201 (46%), Gaps = 18/201 (8%)

Query: 319 VSLEEDDVRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLL 378
           V L + +   +++R E    +GD+++    +     S      ++ IS  +       ++
Sbjct: 451 VYLVDSEFINKKKRTELNNLNGDIVINDVSYSYGYGS----NILSDISLTIKMNSKTTIV 506

Query: 379 GLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSYIGYCPQ----FDAL--- 430
           G++G+GK+T  K+L G  +  SG   +   S++D     +R +I Y PQ    F      
Sbjct: 507 GMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILE 566

Query: 431 NDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSD--REVRTLSGGNKRKLST 488
           N  L  +E++        + +      + + +    LG+ ++   E  ++SGG K++++ 
Sbjct: 567 NLLLGAKENVS----QDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIAL 622

Query: 489 AIALLGNPPLIFLDEPTSGMD 509
           A ALL +  ++ LDE TS +D
Sbjct: 623 ARALLTDSKVLILDESTSNLD 643

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708

>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 61.8 bits (150), Expect = 1e-10
 Identities = 58/202 (28%), Positives = 88/202 (43%), Gaps = 27/202 (13%)

Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKM------LTGAIKPTSGNAYVMNHSI 410
           G K A+  I+  + +     L+G +G GK+T  +       L    + T    Y   + +
Sbjct: 17  GEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIM 76

Query: 411 RDSMDLV--RSYIGYC-------PQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNES 461
               D+V  R  IG         P+    N    PR H E   +        L+TIV +S
Sbjct: 77  DSGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKT-------LDTIVEKS 129

Query: 462 LNKFAL-GHYSDR---EVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW 517
           L   AL     DR      +LSGG +++L  A  L  NP +I +DEP S +DP A   + 
Sbjct: 130 LKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIE 189

Query: 518 TCIERAVSEGRCVILTSHNMEE 539
             IE  + +   VI+ +HNM++
Sbjct: 190 DLIED-LKKEYTVIIVTHNMQQ 210

Length = 253

>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 62.0 bits (151), Expect = 2e-10
 Identities = 38/147 (25%), Positives = 66/147 (44%), Gaps = 9/147 (6%)

Query: 34  IGYCPQFDALNDRLTPREHLEFYSRVRNV--PSVLLNTIVNESLNKFALGHYSDREVRTL 91
           +G+  Q  AL   +T  +++ F  +VR        +   V E L    L   +DR    L
Sbjct: 79  VGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQL 138

Query: 92  SGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR----RFLWTCIERAVSEGRCVILTS 147
           SGG +++++ A AL   P ++ LDEP   +D   R    R+L    +R    G   +  +
Sbjct: 139 SGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDR---LGVTTVFVT 195

Query: 148 HNMEECEALCTKLTIMVNGQFTCLGSA 174
           H+ EE   L  ++ ++  G+   +G  
Sbjct: 196 HDQEEALELADRVVVLNQGRIEQVGPP 222

Length = 345

>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein

 Score = 60.6 bits (147), Expect = 2e-10
 Identities = 29/115 (25%), Positives = 60/115 (52%), Gaps = 5/115 (4%)

Query: 63  PSVLLNTIVNESLNKFA----LGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPT 118
           P + LN    E +   A    +  Y DR    LSGG +++++ A  L+   P++ LDEP 
Sbjct: 97  PGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPF 156

Query: 119 SGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLG 172
           S +DP  R  +   +++  SE  R +++ +H++ +  A+ +++ ++  G+   + 
Sbjct: 157 SALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVS 211

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213

>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 61.1 bits (148), Expect = 2e-10
 Identities = 61/204 (29%), Positives = 95/204 (46%), Gaps = 31/204 (15%)

Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKML------TGAIKPTSGNAYVMNHSI 410
           G   A+  I+  +   E   ++G +G GK+T  K L         +K T    Y  ++ +
Sbjct: 23  GQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNIL 82

Query: 411 RDSMDLV--RSYIGYC-------PQ--FDALNDRLTPREHLEFYSRVRNVPSVLLNTIVN 459
           +  +DLV  R  IG         PQ  FD  N    PR H       +N     L  IV 
Sbjct: 83  KGKVDLVELRKNIGMVFQKGNPFPQSIFD--NVAYGPRIH-----GTKNKKK--LQEIVE 133

Query: 460 ESLNKFAL-GHYSDR---EVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRF 515
           +SL   AL     DR   +  +LSGG +++L  A AL  NP ++ +DEPTS +DP + R 
Sbjct: 134 KSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRK 193

Query: 516 LWTCIERAVSEGRCVILTSHNMEE 539
           +   I + + E   +++ +HNM++
Sbjct: 194 IEELILK-LKEKYTIVIVTHNMQQ 216

Length = 259

>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters

 Score = 60.2 bits (147), Expect = 3e-10
 Identities = 36/131 (27%), Positives = 63/131 (48%), Gaps = 1/131 (0%)

Query: 34  IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSG 93
            GY  Q DAL   LT  +++     ++ VP         E L    L  + +     LSG
Sbjct: 75  RGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSG 134

Query: 94  GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEE 152
           G +++++ A AL  +P ++ LDEP S +D   R  L   +     E G+ V+L +H+++E
Sbjct: 135 GMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDE 194

Query: 153 CEALCTKLTIM 163
              L  ++ ++
Sbjct: 195 AVFLADRVVVL 205

NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 60.2 bits (147), Expect = 3e-10
 Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 2/121 (1%)

Query: 33  YIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDRE-VRTL 91
            IG+  Q   L   LT  E++E    +    +        E L    L     ++    L
Sbjct: 84  KIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSEL 143

Query: 92  SGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCI-ERAVSEGRCVILTSHNM 150
           SGG +++++ A AL+ NP +I  DEPT  +D    + +   + E     G+ +I+ +H+ 
Sbjct: 144 SGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP 203

Query: 151 E 151
           E
Sbjct: 204 E 204

Length = 226

>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor

 Score = 60.8 bits (148), Expect = 3e-10
 Identities = 46/182 (25%), Positives = 76/182 (41%), Gaps = 24/182 (13%)

Query: 372 GECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMD-LVRSYIGYCPQ--FD 428
           G+  GL+G NG GK+T  K+L G +KP  G             D ++  + G   Q  F 
Sbjct: 26  GQVLGLVGPNGIGKSTALKILAGKLKPNLGK-----FDDPPDWDEILDEFRGSELQNYFT 80

Query: 429 AL-NDRLTPREHLEFYSRVRNVPSV-------LLNTI-----VNESLNKFALGHYSDREV 475
            L    +      ++   V  +P         LL        ++E +++  L H  DR +
Sbjct: 81  KLLEGDVKVIVKPQY---VDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNI 137

Query: 476 RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 535
             LSGG  ++++ A AL  +    F DEP+S +D   R      I     +   V++  H
Sbjct: 138 DQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEH 197

Query: 536 NM 537
           ++
Sbjct: 198 DL 199

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255

>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

 Score = 62.4 bits (152), Expect = 3e-10
 Identities = 51/191 (26%), Positives = 87/191 (45%), Gaps = 24/191 (12%)

Query: 359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLV 417
           +P +N ISF +  G+   ++G +GAGK+T  ++L       SG+  +    IRD +   +
Sbjct: 276 RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSL 335

Query: 418 RSYIGYCPQFDAL-NDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHY------ 470
           R  IG  PQ   L ND +        Y+     P       V  +     +  +      
Sbjct: 336 RRAIGIVPQDTVLFNDTI-------AYNIKYGRP-DATAEEVGAAAEAAQIHDFIQSLPE 387

Query: 471 ------SDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAV 524
                  +R ++ LSGG K++++ A  +L NPP++ LDE TS +D    + +   +   V
Sbjct: 388 GYDTGVGERGLK-LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALRE-V 445

Query: 525 SEGRCVILTSH 535
           S GR  ++ +H
Sbjct: 446 SAGRTTLVIAH 456

Length = 497

>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 60.9 bits (148), Expect = 4e-10
 Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 1/78 (1%)

Query: 91  LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER-AVSEGRCVILTSHN 149
           +SGG  RK++    L  NP +I LDEPT+G+DP ++R +   ++     E + +IL SH+
Sbjct: 146 MSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHD 205

Query: 150 MEECEALCTKLTIMVNGQ 167
           M E      ++ +M  G 
Sbjct: 206 MNEVARYADEVIVMKEGS 223

Length = 286

>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 60.4 bits (146), Expect = 4e-10
 Identities = 37/136 (27%), Positives = 71/136 (52%)

Query: 53  LEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLI 112
           + F  R   VP   +   V+E+L      H+  + ++ LS G K++++ A AL+     +
Sbjct: 99  IAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYL 158

Query: 113 FLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLG 172
            LDEPT+G+DP  R  +   I R V++G  VI++SH+++    +   + ++  GQ    G
Sbjct: 159 LLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHG 218

Query: 173 SATHLKSKSMALPVSG 188
           +   + + + A+  +G
Sbjct: 219 APGEVFACTEAMEQAG 234

Length = 271

>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 61.2 bits (149), Expect = 4e-10
 Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 1/108 (0%)

Query: 79  ALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS 138
            + H  DR   TLSGG K++++   ALL  P L+ +DEP + +D   +R +   +ER   
Sbjct: 117 GIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRD 176

Query: 139 EGRCVIL-TSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKSMALP 185
           E    IL  SH+++E   L  ++ ++ NG+    G    +       P
Sbjct: 177 EINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSPDFPP 224

Length = 352

>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit

 Score = 61.0 bits (148), Expect = 5e-10
 Identities = 32/143 (22%), Positives = 61/143 (42%), Gaps = 5/143 (3%)

Query: 34  IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSG 93
           IG   Q  AL   +T  ++      +   P         E L    L  Y  R    LSG
Sbjct: 73  IGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSG 132

Query: 94  GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFL---WTCIERAVSEGRCVILTSHNM 150
           G ++++  A AL   P ++ +DE  S +DP  R  +      ++  +   + ++  +H++
Sbjct: 133 GMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATL--QKTIVFITHDL 190

Query: 151 EECEALCTKLTIMVNGQFTCLGS 173
           +E   +  ++ IM  G+   +G+
Sbjct: 191 DEAIRIGDRIVIMKAGEIVQVGT 213

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363

>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system

 Score = 59.4 bits (144), Expect = 5e-10
 Identities = 42/191 (21%), Positives = 86/191 (45%), Gaps = 10/191 (5%)

Query: 369 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFD 428
             +GE   ++G +G+GK+T   ++ G   P SG   ++N     +       +    Q +
Sbjct: 21  FAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRV-LINGVDVTAAPPADRPVSMLFQEN 79

Query: 429 ALNDRLTPREHLEFYSRVRNVPSVLLNTI----VNESLNKFALGHYSDREVRTLSGGNKR 484
            L   LT  +++     +   P + L       +  +L +  L     R    LSGG ++
Sbjct: 80  NLFAHLTVEQNVG----LGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQ 135

Query: 485 KLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEAL 543
           +++ A  L+ + P++ LDEP + +DP  R  +   +    +E    V++ +H  E+ + L
Sbjct: 136 RVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRL 195

Query: 544 CTKLTIMVNGQ 554
             ++  + NG+
Sbjct: 196 AQRVVFLDNGR 206

Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 60.2 bits (146), Expect = 5e-10
 Identities = 46/159 (28%), Positives = 76/159 (47%), Gaps = 7/159 (4%)

Query: 361 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRS- 419
           AV  +SF +  G+   ++G NG+GK+T  KML G I+PTSG   + +H +       RS 
Sbjct: 28  AVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSK 87

Query: 420 ---YIGYCPQFDALNDRLTPREHLEF-YSRVRNVPSVLLNTIVNESLNKFAL-GHYSDRE 474
               I   P   +LN RL   + L+F      ++        + E+L    L   +++  
Sbjct: 88  RIRMIFQDPN-TSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYY 146

Query: 475 VRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR 513
              L+ G K++++ A AL+  P +I  DE  + +D   R
Sbjct: 147 PHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMR 185

Length = 267

>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 60.1 bits (146), Expect = 6e-10
 Identities = 42/151 (27%), Positives = 71/151 (47%), Gaps = 25/151 (16%)

Query: 26  TIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGH--Y 83
           TI+K+   I + P    L++        E  +RV+             ++N   L +  Y
Sbjct: 100 TIEKD---IAFGPINLGLSEE-------EIENRVK------------RAMNIVGLDYEDY 137

Query: 84  SDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRC 142
            D+    LSGG KR+++ A  +   P ++ LDEPT+G+DP  R  +   I+    E    
Sbjct: 138 KDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMT 197

Query: 143 VILTSHNMEECEALCTKLTIMVNGQFTCLGS 173
           +IL SH+ME+   L  ++ +M  G+    G+
Sbjct: 198 IILVSHSMEDVAKLADRIIVMNKGKCELQGT 228

Length = 287

>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family

 Score = 61.5 bits (150), Expect = 6e-10
 Identities = 60/216 (27%), Positives = 92/216 (42%), Gaps = 56/216 (25%)

Query: 340 GD-VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP 398
           GD V+  + L K +    G K  ++ +SF +  G   G++G NGAGK+T F+M+TG  +P
Sbjct: 319 GDKVIEAENLSKGF----GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQP 374

Query: 399 TSGNAYVMNHSIRDSMDLVRSYIGYCPQF-DALNDRLTPREHLEFYSRVRNVPSVLLNTI 457
            SG        I +++ L      Y  Q  DAL+   T  E                   
Sbjct: 375 DSGTI-----KIGETVKL-----AYVDQSRDALDPNKTVWEE------------------ 406

Query: 458 VNESLNKFALGHY---------------SDRE--VRTLSGGNKRKLSTAIALLGNPPLIF 500
           ++  L+   LG                 SD++  V  LSGG + ++  A  L     ++ 
Sbjct: 407 ISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLL 466

Query: 501 LDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSH 535
           LDEPT+ +D    R L    E A+ E   C ++ SH
Sbjct: 467 LDEPTNDLDVETLRAL----EEALLEFAGCAVVISH 498

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552

>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 59.6 bits (144), Expect = 7e-10
 Identities = 35/106 (33%), Positives = 56/106 (52%), Gaps = 5/106 (4%)

Query: 67  LNTIVNESLNKFAL----GHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 122
           L+ IV ESL K AL        ++    LSGG +++L  A AL   P +I LDEPTS +D
Sbjct: 119 LDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALD 178

Query: 123 PGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQF 168
           P A + +   +E  +SE   +++ +HN+ +   +   +  M  G+ 
Sbjct: 179 PIATQRIEKLLEE-LSENYTIVIVTHNIGQAIRIADYIAFMYRGEL 223

Length = 250

>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 59.5 bits (145), Expect = 7e-10
 Identities = 53/207 (25%), Positives = 91/207 (43%), Gaps = 40/207 (19%)

Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS-----GNAYVMNHSIR 411
           G K A+  I+  + + +   L+G +G GK+T  + L             G   +   +I 
Sbjct: 18  GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIY 77

Query: 412 D-SMDLV--RSYIGYCPQFDALNDRLTP-----REHLEFYSRVRNVPSVLLNTIVNESLN 463
           D  +D+V  R  +G   Q      +  P      +++ +  R+  +    L+ IV  SL 
Sbjct: 78  DPKVDVVELRRRVGMVFQ------KPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLK 131

Query: 464 KFALGHYSDREV--------RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDP-GARR 514
           K AL      EV          LSGG +++L  A AL   P ++ +DEPTS +DP    +
Sbjct: 132 KAALWD----EVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLK 187

Query: 515 FLWTCIERAVSEGR---CVILTSHNME 538
                IE  ++E +    +++ +HNM+
Sbjct: 188 -----IEELITELKKKYTIVIVTHNMQ 209

Length = 253

>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 59.6 bits (145), Expect = 8e-10
 Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 3/123 (2%)

Query: 60  RNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTS 119
           + VP   +  I+++   K  +  Y D+E + LSGG K++++ A  L  NP +I  DE TS
Sbjct: 112 KKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTS 171

Query: 120 GMDPGARRFLWTCIERAVSEG-RCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATH-L 177
            +DP  +R +   +        + +I  +H+M+E   L  K+ +   G+    G     L
Sbjct: 172 MLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEA-ILADKVIVFSEGKLIAQGKPKEIL 230

Query: 178 KSK 180
            +K
Sbjct: 231 NNK 233

Length = 271

>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 59.6 bits (144), Expect = 8e-10
 Identities = 67/251 (26%), Positives = 110/251 (43%), Gaps = 37/251 (14%)

Query: 326 VRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGK 385
           VR++ E          +L VK L   Y    G K AVN IS  + +     L+G +G GK
Sbjct: 5   VREKIEIAPFPEAKEHILEVKDLSIYY----GEKRAVNDISMDIEKHAVTALIGPSGCGK 60

Query: 386 TTTFKM---LTGAIKPTSGNAYVMNHSIR---DSMDLV--RSYIGYC-----PQFDALND 432
           +T  +    +   I        ++   +     ++++V  R  IG       P   ++ +
Sbjct: 61  STFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYN 120

Query: 433 RLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFAL-GHYSDR---EVRTLSGGNKRKLST 488
            +T   H   Y+  R     +L+ IV ESL K AL     DR      +LSGG +++L  
Sbjct: 121 NIT---HALKYAGERR--KSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCI 175

Query: 489 AIALLGNPPLIFLDEPTSGMDP--GARRFLWTCIERAVSEGR---CVILTSHNMEECEAL 543
           A  L   P ++ LDEP S +DP   A+      IE  ++E +    +I+ +HNM++   +
Sbjct: 176 ARTLAMKPAVLLLDEPASALDPISNAK------IEELITELKEEYSIIIVTHNMQQALRV 229

Query: 544 CTKLTIMVNGQ 554
             +    +NG 
Sbjct: 230 SDRTAFFLNGD 240

Length = 268

>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters

 Score = 57.4 bits (140), Expect = 9e-10
 Identities = 23/61 (37%), Positives = 41/61 (67%), Gaps = 1/61 (1%)

Query: 91  LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 150
           LSGG +++++ A ALL +PP++ LDE TS +DP     +   + RA+++G+ VI+ +H +
Sbjct: 97  LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEAL-RALAKGKTVIVIAHRL 155

Query: 151 E 151
            
Sbjct: 156 S 156

The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171

>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 59.6 bits (145), Expect = 9e-10
 Identities = 52/205 (25%), Positives = 84/205 (40%), Gaps = 26/205 (12%)

Query: 377 LLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI---RDSMDL--VRSYIGYCPQFDALN 431
           ++G  G+GK+T  + L G ++PTSG   +    I   + +  L  +R  +G   QF    
Sbjct: 38  IIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQF---- 93

Query: 432 DRLTPREHLEFYSRVRN----------VPSVLLNTIVNESLNKFALGH-YSDREVRTLSG 480
               P EH  F   V            V          E +    L      R    LSG
Sbjct: 94  ----P-EHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSG 148

Query: 481 GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEE 539
           G  R+++ A  L   P ++ LDEPT+G+DP  R+ +     +   E G   +L +H+ME+
Sbjct: 149 GQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMED 208

Query: 540 CEALCTKLTIMVNGQFTCLGSATHL 564
                 ++ +M  G     G+   +
Sbjct: 209 AARYADQIVVMHKGTVFLQGTPREI 233

Length = 290

>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

 Score = 59.1 bits (144), Expect = 9e-10
 Identities = 53/233 (22%), Positives = 88/233 (37%), Gaps = 50/233 (21%)

Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG--AIKPTSGNAYVMNHSIRDS- 413
           G K  +  ++  V  GE   ++G NG+GK+T    + G    + T G        I +  
Sbjct: 15  GKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELS 74

Query: 414 ------------------------MDLVRSYIGYCPQFDALNDRLTPREHL-EFYSRVRN 448
                                    D +R+         A+N R   R  L EF   ++ 
Sbjct: 75  PDERARAGIFLAFQYPVEIPGVTNSDFLRA---------AMNARRGARGILPEFIKELKE 125

Query: 449 VPSVLLNTIVNESLNKFALGHYSDREV-RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSG 507
              +L        L++     + +R V    SGG K++      LL  P L  LDEP SG
Sbjct: 126 KAELL-------GLDEE----FLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSG 174

Query: 508 MDPGARRFLWTCIERAVSEGRCVILTSHNMEECEAL-CTKLTIMVNGQFTCLG 559
           +D  A + +   I     EGR V++ +H     + +   K+ ++ +G+    G
Sbjct: 175 LDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSG 227

Length = 251

>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 59.2 bits (144), Expect = 1e-09
 Identities = 38/136 (27%), Positives = 67/136 (49%), Gaps = 3/136 (2%)

Query: 34  IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFAL--GHYSDREVRTL 91
           IGY  Q   L   LT  E++    ++       +    +E L+   L    Y+DR    L
Sbjct: 77  IGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHEL 136

Query: 92  SGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNM 150
           SGG ++++  A AL  +PP++ +DEP   +DP  R+ L   I+    E G+ ++  +H++
Sbjct: 137 SGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDI 196

Query: 151 EECEALCTKLTIMVNG 166
           +E   L  ++ +M  G
Sbjct: 197 DEALKLADRIAVMDAG 212

Length = 309

>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2

 Score = 60.6 bits (147), Expect = 1e-09
 Identities = 66/235 (28%), Positives = 98/235 (41%), Gaps = 40/235 (17%)

Query: 359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG--AIKPTSGNAYVMNHSIRDSMDL 416
           K  +  ISF +  GE  G+LG +GAGK+    +L G    +PTSG   + + ++ +    
Sbjct: 13  KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRI-IYHVALCEKCGY 71

Query: 417 VR--SYIGY-CPQF---------------DALNDRLTPREHLEF------YSRVRNVPSV 452
           V   S +G  CP                 D L  R+  R  +        Y     + +V
Sbjct: 72  VERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNV 131

Query: 453 L--LNTI---VNESLNKFA-------LGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIF 500
           L  L  I     E++ +         L H      R LSGG K+++  A  L   P L  
Sbjct: 132 LEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFL 191

Query: 501 LDEPTSGMDPGARRFLWTCIERAV-SEGRCVILTSHNMEECEALCTKLTIMVNGQ 554
            DEPT  +DP   + +   +E AV + G  ++LTSH  E  E L  K   + NG+
Sbjct: 192 ADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGE 246

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520

>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family

 Score = 60.7 bits (148), Expect = 1e-09
 Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 6/81 (7%)

Query: 89  RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER--AVSEGRCVILT 146
           R+LSGG ++ ++ A ALL +PP++ LDEPTS MD  +        +R      G+ ++L 
Sbjct: 600 RSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEE---RFKDRLKRWLAGKTLVLV 656

Query: 147 SHNMEECEALCTKLTIMVNGQ 167
           +H     + L  ++ +M NG+
Sbjct: 657 THRTSLLD-LVDRIIVMDNGR 676

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694

>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 60.4 bits (147), Expect = 1e-09
 Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 4/80 (5%)

Query: 89  RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDP-GARRFLWTCIERAVSEGRCVILTS 147
           R LSGG +R+L+ A ALL + PL  LDEPT G+DP   R+ L    E A  EG+ +++ +
Sbjct: 473 RRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA--EGKTLLMVT 530

Query: 148 HNMEECEALCTKLTIMVNGQ 167
           H +   E    ++ ++ NG+
Sbjct: 531 HRLRGLER-MDRIIVLDNGK 549

Length = 573

>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit

 Score = 59.8 bits (145), Expect = 1e-09
 Identities = 40/144 (27%), Positives = 73/144 (50%), Gaps = 1/144 (0%)

Query: 31  LSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRT 90
           L +I    Q  AL   +T  E++ F  ++R VP   +   V E+L    L  ++DR+   
Sbjct: 41  LRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQ 100

Query: 91  LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHN 149
           LSGG +++++ A AL+  P ++ LDEP S +D   R  +   ++    + G   +  +H+
Sbjct: 101 LSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHD 160

Query: 150 MEECEALCTKLTIMVNGQFTCLGS 173
            EE   +  ++ IM  G+   +G+
Sbjct: 161 QEEAMTMSDRIAIMRKGKIAQIGT 184

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325

>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 58.7 bits (142), Expect = 1e-09
 Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 1/71 (1%)

Query: 83  YSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GR 141
           Y+ R+V+ LSGG  +++S A  L  NP ++ LDEPTS +DP +   +   I +  ++   
Sbjct: 124 YATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNL 183

Query: 142 CVILTSHNMEE 152
            VI  +HNME+
Sbjct: 184 TVIWITHNMEQ 194

Length = 241

>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

 Score = 59.6 bits (144), Expect = 1e-09
 Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 2/138 (1%)

Query: 42  ALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLST 101
           AL   L   +++ F  R + +P   +   V ++L    LG  +      LSGG +++++ 
Sbjct: 89  ALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAI 148

Query: 102 AIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE--GRCVILTSHNMEECEALCTK 159
           A A+   P ++ LDEP S +D   R  +   I     E     ++  +H+ ++   L  K
Sbjct: 149 ARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADK 208

Query: 160 LTIMVNGQFTCLGSATHL 177
             IM +G+    G    L
Sbjct: 209 AGIMKDGRLAAHGEPQAL 226

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362

>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional

 Score = 59.7 bits (145), Expect = 1e-09
 Identities = 58/202 (28%), Positives = 96/202 (47%), Gaps = 18/202 (8%)

Query: 363 NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSY-- 420
           N IS  +  G+   LLG +G+GKTT  +++ G    TSG  ++  H      D+ R +  
Sbjct: 19  NDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSG--HIRFHG----TDVSRLHAR 72

Query: 421 ---IGYCPQFDALNDRLTPREHLEFYSRV---RNVPSV-LLNTIVNESLNKFALGHYSDR 473
              +G+  Q  AL   +T  +++ F   V   R  P+   +   V + L    L H +DR
Sbjct: 73  DRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADR 132

Query: 474 EVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGR--CVI 531
               LSGG K++++ A AL   P ++ LDEP   +D   R+ L   + +   E +   V 
Sbjct: 133 YPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVF 192

Query: 532 LTSHNMEECEALCTKLTIMVNG 553
           +T H+ EE   +  ++ +M  G
Sbjct: 193 VT-HDQEEAMEVADRVVVMSQG 213

Length = 353

>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C

 Score = 57.8 bits (140), Expect = 1e-09
 Identities = 45/162 (27%), Positives = 69/162 (42%), Gaps = 38/162 (23%)

Query: 360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDL--V 417
           P +  +SF V  GE  G++G  GAGK+T    L   ++   G   +    I  ++ L  +
Sbjct: 22  PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDIS-TIPLEDL 80

Query: 418 RSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRT 477
           RS +   PQ D                     P++   TI + +L+ F    YSD E+  
Sbjct: 81  RSSLTIIPQ-D---------------------PTLFSGTIRS-NLDPF--DEYSDEEIYG 115

Query: 478 ----------LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 509
                     LS G ++ L  A ALL  P ++ LDE T+ +D
Sbjct: 116 ALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASID 157

Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207

>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 59.0 bits (143), Expect = 1e-09
 Identities = 47/188 (25%), Positives = 84/188 (44%), Gaps = 9/188 (4%)

Query: 360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV-----MNHSIRDSM 414
            A+  ++  +  G     +G  G+GK+T  ++L G   PT G+  V      + S    +
Sbjct: 21  RALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDI 80

Query: 415 DLVRSYIGYCPQF--DALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGH-YS 471
             +R  +G   QF    L +  T  + + F  +   V       +  E L    +     
Sbjct: 81  KQIRKKVGLVFQFPESQLFEE-TVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLF 139

Query: 472 DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVI 531
           ++    LSGG  R+++ A  L   P ++ LDEPT+G+DP  R+ L T  ++    G  ++
Sbjct: 140 EKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIV 199

Query: 532 LTSHNMEE 539
           L +H M++
Sbjct: 200 LVTHLMDD 207

Length = 280

>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C

 Score = 57.6 bits (140), Expect = 2e-09
 Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 12/101 (11%)

Query: 75  LNKFALGHYS--DREV----RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRF 128
           +  F   H +  D ++    R LSGG ++ ++ A ALL +PP++ LDEPTS MD  +   
Sbjct: 119 VTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEER 178

Query: 129 LWTCIER--AVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 167
           L    ER   +   + +I+ +H     + L  ++ +M +G+
Sbjct: 179 L---KERLRQLLGDKTLIIITHRPSLLD-LVDRIIVMDSGR 215

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220

>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 59.2 bits (144), Expect = 2e-09
 Identities = 42/146 (28%), Positives = 73/146 (50%), Gaps = 3/146 (2%)

Query: 34  IGYCPQ-FDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLS 92
           IG   Q F+ L+ R T  E++ F   +  VP   +   V E L    L   +DR    LS
Sbjct: 85  IGMIFQHFNLLSSR-TVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLS 143

Query: 93  GGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNME 151
           GG K++++ A AL  NP ++  DE TS +DP   + +   ++    E G  ++L +H ME
Sbjct: 144 GGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME 203

Query: 152 ECEALCTKLTIMVNGQFTCLGSATHL 177
             + +C ++ ++  G+    G+ + +
Sbjct: 204 VVKRICDRVAVLDQGRLVEEGTVSEV 229

Length = 339

>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 29/118 (24%), Positives = 60/118 (50%), Gaps = 1/118 (0%)

Query: 51  EHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPP 110
           E++ F   V+ VP         E+L    L  Y+D+    LSGG ++++  A AL  +P 
Sbjct: 125 ENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPD 184

Query: 111 LIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQ 167
           ++ +DE  S +DP  R  +   +    ++  + ++  +H+++E   +  ++ IM +G+
Sbjct: 185 ILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGE 242

Length = 386

>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 58.2 bits (141), Expect = 2e-09
 Identities = 32/92 (34%), Positives = 53/92 (57%), Gaps = 1/92 (1%)

Query: 62  VPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGM 121
           VP   ++  V+E+L +  +   +D E   LSGG K++++ A  L  NP +I LDE TS +
Sbjct: 114 VPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSML 173

Query: 122 DPGARRFLWTCIERAVSEGRCVILT-SHNMEE 152
           DP AR+ L   + +  SE    I++ +H++ E
Sbjct: 174 DPDARQNLLDLVRKVKSEHNITIISITHDLSE 205

Length = 269

>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

 Score = 59.8 bits (145), Expect = 2e-09
 Identities = 47/182 (25%), Positives = 77/182 (42%), Gaps = 19/182 (10%)

Query: 362 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR-DSMDLVRSY 420
           V  I+  + RGE   L+G NG+GK+T   +LTG  +P SG   +    +  + ++  R  
Sbjct: 339 VGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKL 398

Query: 421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGH---YSDREVRT 477
                    L D+L   E            S  L   + + L +  L H    +D     
Sbjct: 399 FSAVFSDYHLFDQLLGPE---------GKASPQL---IEKWLQRLELAHKTSLNDGRFSN 446

Query: 478 --LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW-TCIERAVSEGRCVILTS 534
             LS G K++L+  +ALL    ++ LDE  +  DP  RR  +   +     +G+ +   S
Sbjct: 447 LKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAIS 506

Query: 535 HN 536
           H+
Sbjct: 507 HD 508

Length = 546

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 60.2 bits (146), Expect = 2e-09
 Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 9/79 (11%)

Query: 82  HYSDREVRTLSGGNKRKLSTAIAL--------LGNPPLIFLDEPTSGMDPGARRFLWTCI 133
               R ++TLSGG +   S A+ L             L+FLDEP   +D      L   +
Sbjct: 807 GGEVRPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEIL 866

Query: 134 ERAVSEGRCVILTSHNMEE 152
           E  +S+GR +I+ SH +EE
Sbjct: 867 EELLSDGRQIIIISH-VEE 884

Length = 908

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 60.2 bits (146), Expect = 2e-09
 Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 9/79 (11%)

Query: 469 HYSDREVRTLSGGNKRKLSTAIAL--------LGNPPLIFLDEPTSGMDPGARRFLWTCI 520
               R ++TLSGG +   S A+ L             L+FLDEP   +D      L   +
Sbjct: 807 GGEVRPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEIL 866

Query: 521 ERAVSEGRCVILTSHNMEE 539
           E  +S+GR +I+ SH +EE
Sbjct: 867 EELLSDGRQIIIISH-VEE 884

Length = 908

>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

 Score = 59.2 bits (144), Expect = 3e-09
 Identities = 46/194 (23%), Positives = 71/194 (36%), Gaps = 50/194 (25%)

Query: 362 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYI 421
           +++++F V  GE   + G +GAGKT+  + L G     SG                   I
Sbjct: 409 LSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGR------------------I 450

Query: 422 GYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIV--------------NESLNKFAL 467
                   L           F  +   +P   L   +                 L+K  L
Sbjct: 451 SMPADSALL-----------FLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGL 499

Query: 468 GHYSDR--EV----RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIE 521
           G  ++R  E     R LSGG +++L+ A  LL  P  +FLDE TS +D      L+  ++
Sbjct: 500 GDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLK 559

Query: 522 RAVSEGRCVILTSH 535
             +     VI   H
Sbjct: 560 EEL-PDATVISVGH 572

Length = 604

>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter

 Score = 56.9 bits (138), Expect = 4e-09
 Identities = 30/98 (30%), Positives = 54/98 (55%), Gaps = 1/98 (1%)

Query: 81  GHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE- 139
             ++DR    LSGG ++++  A AL  +PPL+ +DEP   +DP  R  L    +R   E 
Sbjct: 126 AEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQEL 185

Query: 140 GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 177
           G+ ++  +H+++E   L  ++ IM NG+   +G+   +
Sbjct: 186 GKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEI 223

OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242

>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

 Score = 57.3 bits (139), Expect = 4e-09
 Identities = 35/143 (24%), Positives = 64/143 (44%), Gaps = 9/143 (6%)

Query: 45  DRLTPREHLEFYSRV-RNVPSVLLNTI-------VNESLNKFALGHYSDREVRTLSGGNK 96
           + LT RE+LE      ++V + L   +       ++E L    LG   DR    LS G K
Sbjct: 94  ENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQK 153

Query: 97  RKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEAL 156
           + L   + L  +P L+ LDEP +GM           + ++++    +++  H+M     +
Sbjct: 154 QWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELL-KSLAGKHSILVVEHDMGFVREI 212

Query: 157 CTKLTIMVNGQFTCLGSATHLKS 179
             K+T++  G     GS   +++
Sbjct: 213 ADKVTVLHEGSVLAEGSLDEVQN 235

Length = 249

>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein

 Score = 58.4 bits (141), Expect = 4e-09
 Identities = 45/161 (27%), Positives = 75/161 (46%), Gaps = 7/161 (4%)

Query: 23  SNPTIDKNLSYIGYCPQ-FDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALG 81
           SN  + K    IG   Q F+ L+ R T   ++     + N P   +   V E L    LG
Sbjct: 73  SNSELTKARRQIGMIFQHFNLLSSR-TVFGNVALPLELDNTPKDEIKRKVTELLALVGLG 131

Query: 82  HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTC---IERAVS 138
              D     LSGG K++++ A AL  NP ++  DE TS +DP   + +      I R + 
Sbjct: 132 DKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRL- 190

Query: 139 EGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 179
            G  ++L +H M+  + +C  + ++ NG+    G+ + + S
Sbjct: 191 -GLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343

>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 57.4 bits (138), Expect = 4e-09
 Identities = 56/218 (25%), Positives = 91/218 (41%), Gaps = 37/218 (16%)

Query: 361 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT------------GAIKPTSGNAYVMNH 408
           A+N I+  + +     L+G +G GK+T  + L             G +     N Y  N 
Sbjct: 22  ALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNF 81

Query: 409 SIRDSMDLVRSYIGYCPQFDALNDRLTPREHL-EFYSRVRNVPSV-------LLNTIVNE 460
            I +    +R  IG   Q        TP   L   Y  +   P +        L+ IV +
Sbjct: 82  DILE----LRRKIGMVFQ--------TPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQ 129

Query: 461 SLNKFALGHYS----DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFL 516
           SL K AL +      +    +LSGG +++L  A  L   P +I +DEPTS +DP +   +
Sbjct: 130 SLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKI 189

Query: 517 WTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 554
              I   + E   +I+ +HNM++   +  +    +NG 
Sbjct: 190 EELIIN-LKESYTIIIVTHNMQQAGRISDRTAFFLNGC 226

Length = 254

>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional

 Score = 58.5 bits (142), Expect = 4e-09
 Identities = 57/206 (27%), Positives = 97/206 (47%), Gaps = 31/206 (15%)

Query: 355 SKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM 414
           S   +P ++ +S+ V  GE + ++G NGAGK+T   ++TG       N   +    R S 
Sbjct: 269 SYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSG 328

Query: 415 DLV---RSYIGYCPQFDALNDRLTPREHLEFY--SRVRNV------PSVLLNTIVNESLN 463
           + +   + +IGY          ++   HL++   + VRNV       S+ +   V++   
Sbjct: 329 ETIWDIKKHIGY----------VSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQ 378

Query: 464 KFA------LG---HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARR 514
           K A      LG     +D    +LS G +R      AL+ +P L+ LDEP  G+DP  R+
Sbjct: 379 KLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQ 438

Query: 515 FLWTCIERAVSEGRCVIL-TSHNMEE 539
            +   ++  +SEG   +L  SH+ E+
Sbjct: 439 LVRRFVDVLISEGETQLLFVSHHAED 464

Length = 490

>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 56.9 bits (138), Expect = 5e-09
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 91  LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL-TSHN 149
           LSGG +++++ A AL+  P L+ LDEPTS +D   +  +   +     E     L  SH+
Sbjct: 142 LSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHD 201

Query: 150 MEECEALCTKLTIMVNGQFTCLGSATHLKS 179
           +   E +C ++ +M NGQ   +G    L S
Sbjct: 202 LALVEHMCDRIAVMDNGQIVEIGPTEELLS 231

Length = 252

>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C

 Score = 55.3 bits (134), Expect = 5e-09
 Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 1/77 (1%)

Query: 91  LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 150
           LSGG +++L  A AL GNP ++ LDEP S +D    R L   I    + G   I+ +H  
Sbjct: 97  LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRP 156

Query: 151 EECEALCTKLTIMVNGQ 167
           E   +   ++ ++ +G+
Sbjct: 157 ETLAS-ADRILVLEDGR 172

This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173

>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein

 Score = 58.3 bits (141), Expect = 5e-09
 Identities = 59/222 (26%), Positives = 90/222 (40%), Gaps = 39/222 (17%)

Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT---SGNAY-----VMNH 408
           G   A++ I   V  GEC GL G NGAGK+T  K+L+G + P     G  Y     +   
Sbjct: 12  GGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSG-VYPHGTWDGEIYWSGSPLKAS 70

Query: 409 SIRDSMDLVRSYIGYCPQFDALNDRLTPREHL----------------EFYSRVRNVPSV 452
           +IRD+    R+ I    Q   L   L+  E++                  Y R +N+   
Sbjct: 71  NIRDTE---RAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRE 127

Query: 453 LLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGA 512
           L     N +           R V    GG ++ +  A AL     L+ LDEP+S +    
Sbjct: 128 LQLDADNVT-----------RPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKE 176

Query: 513 RRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 554
              L   I    + G   +  SH + E +A+C  + ++ +GQ
Sbjct: 177 TEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQ 218

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500

>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 57.3 bits (138), Expect = 5e-09
 Identities = 59/235 (25%), Positives = 100/235 (42%), Gaps = 40/235 (17%)

Query: 352 YANSKGTK---PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 408
           Y  +K T     A+N  S    + +   ++G  G+GK+T  ++  G I   +G   V ++
Sbjct: 14  YTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDY 73

Query: 409 SI-------RDSMDLVRSYIGYC---PQFDALNDRLTP----------REHLEFYSRVRN 448
           +I       ++   L R  IG     P++    + +                E Y   + 
Sbjct: 74  AIPANLKKIKEVKRL-RKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAY---KK 129

Query: 449 VPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTA--IALLGNPPLIFLDEPTS 506
           VP +L    + E         Y  R    LSGG KR+++ A  IA+ GN   + LDEPT 
Sbjct: 130 VPELLKLVQLPED--------YVKRSPFELSGGQKRRVALAGIIAMDGNT--LVLDEPTG 179

Query: 507 GMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 560
           G+DP          ER   E  + +I+ +HNM++   +  ++ +M  G+   +GS
Sbjct: 180 GLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGS 234

Length = 289

>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional

 Score = 58.3 bits (142), Expect = 7e-09
 Identities = 52/187 (27%), Positives = 89/187 (47%), Gaps = 33/187 (17%)

Query: 371 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLV-RSYIG-----YC 424
            G+  G+LG NG GKTT  K+L+G + P  G+     +    S D V + + G     Y 
Sbjct: 98  EGKVTGILGPNGIGKTTAVKILSGELIPNLGD-----YEEEPSWDEVLKRFRGTELQNY- 151

Query: 425 PQFDAL-NDRLTPR---EHLEFYSRV--RNVPSVLLNT----IVNESLNKFALGHYSDRE 474
             F  L N  +      ++++   +V    V  +L        ++E + +  L +  DR+
Sbjct: 152 --FKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRD 209

Query: 475 VRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR----RFLWTCIERAVSEGRCV 530
           +  LSGG  ++++ A ALL +    F DEPTS +D   R    R +     R ++EG+ V
Sbjct: 210 ISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLI-----RELAEGKYV 264

Query: 531 ILTSHNM 537
           ++  H++
Sbjct: 265 LVVEHDL 271

Length = 590

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 58.0 bits (141), Expect = 8e-09
 Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 91  LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHN 149
           LSGG ++++  A+AL   P L+  DEPT+ +D   +  +   ++    E G  V+  +H+
Sbjct: 155 LSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHD 214

Query: 150 MEECEALCTKLTIMVNGQF 168
           +     L  ++ +M  G+ 
Sbjct: 215 LGVVAELADRVVVMYKGEI 233

Length = 539

>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional

 Score = 57.7 bits (140), Expect = 8e-09
 Identities = 28/83 (33%), Positives = 51/83 (61%)

Query: 85  DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVI 144
           ++ +  LSGGN++K++ A  L+  P ++ LDEPT G+D GA++ ++  I +  +EG  +I
Sbjct: 390 EQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSII 449

Query: 145 LTSHNMEECEALCTKLTIMVNGQ 167
           L S  M E   +  ++ +M  G+
Sbjct: 450 LVSSEMPEVLGMSDRILVMHEGR 472

Length = 501

>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family

 Score = 58.0 bits (141), Expect = 8e-09
 Identities = 61/235 (25%), Positives = 92/235 (39%), Gaps = 63/235 (26%)

Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
           +  + R+ K+       K  +  IS     G   G+LGLNGAGK+T  +++ G  K  +G
Sbjct: 4   IYTMNRVSKVVP---PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNG 60

Query: 402 NAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNES 461
            A      I+         +GY PQ   L+   T RE++E    V  +   L     NE 
Sbjct: 61  EARPAP-GIK---------VGYLPQEPQLDPTKTVRENVE--EGVAEIKDAL--DRFNEI 106

Query: 462 LNKFAL-----------------------GHYSDRE----------------VRTLSGGN 482
             KFA                            DR+                V  LSGG 
Sbjct: 107 SAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGE 166

Query: 483 KRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE--GRCVILTSH 535
           +R+++    LL  P ++ LDEPT+ +D  A    W  +E+ + E  G  V+  +H
Sbjct: 167 RRRVALCRLLLSKPDMLLLDEPTNHLD--AESVAW--LEQHLQEYPG-TVVAVTH 216

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552

>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional

 Score = 56.5 bits (137), Expect = 8e-09
 Identities = 67/245 (27%), Positives = 106/245 (43%), Gaps = 55/245 (22%)

Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
           L V+ L K+Y   KG +     +SF +  GE  G++G +G+GKTT    L+  + P +G 
Sbjct: 7   LSVRGLTKLYGPRKGCR----DVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGE 62

Query: 403 A-YVMNH-SIRD--SMD------LVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSV 452
             Y M    +RD  ++       L+R+  G+  Q         PR+ L           V
Sbjct: 63  VHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQ--------HPRDGLR--------MQV 106

Query: 453 LLNTIVNESLNKFALG--HYSD-REV-------------------RTLSGGNKRKLSTAI 490
                + E L   A+G  HY D R                      T SGG +++L  A 
Sbjct: 107 SAGGNIGERL--MAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIAR 164

Query: 491 ALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTI 549
            L+ +P L+F+DEPT G+D   +  L   +   V E G  V++ +H++     L  +L +
Sbjct: 165 NLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLV 224

Query: 550 MVNGQ 554
           M  G+
Sbjct: 225 MKQGR 229

Length = 258

>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 56.1 bits (136), Expect = 9e-09
 Identities = 25/107 (23%), Positives = 54/107 (50%), Gaps = 1/107 (0%)

Query: 73  ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDP-GARRFLWT 131
           ++L +  +   + +   TLSGG +++++ A AL+  P +I  DEP + +DP  A++ +  
Sbjct: 130 DALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDI 189

Query: 132 CIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 178
             +    +G  VI+  H ++  +    ++  +  G+    G A+ L 
Sbjct: 190 LKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELT 236

Length = 258

>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 56.7 bits (137), Expect = 9e-09
 Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 2/133 (1%)

Query: 60  RNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTS 119
           R VP   +  IV + L    +  Y D E   LSGG K++++ A  L   P +I LDE TS
Sbjct: 113 RAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTS 172

Query: 120 GMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 178
            +DP  +  +   I +   +    VI  +H+++E   +  ++ ++ +G+    GS   + 
Sbjct: 173 MLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN-MADQVLVLDDGKLLAQGSPVEIF 231

Query: 179 SKSMALPVSGNDL 191
           SK   L   G D+
Sbjct: 232 SKVEMLKEIGLDI 244

Length = 282

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 57.7 bits (140), Expect = 9e-09
 Identities = 46/193 (23%), Positives = 79/193 (40%), Gaps = 44/193 (22%)

Query: 371 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDAL 430
            G+  G+LG NG GK+T  K+L G +KP  G          +            P +D +
Sbjct: 99  PGKVVGILGPNGIGKSTALKILAGELKPNLGRY--------EDP----------PSWDEV 140

Query: 431 NDRLTPREHLEFYSRVRN--------------VPSVLLNTI------------VNESLNK 464
             R    E   ++ ++                +P V+   +             +E + +
Sbjct: 141 IKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVER 200

Query: 465 FALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAV 524
             L +  DR+V  LSGG  ++++ A ALL +  + F DEP+S +D   R      I    
Sbjct: 201 LGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELA 260

Query: 525 SEGRCVILTSHNM 537
            +G+ VI+  H++
Sbjct: 261 EDGKYVIVVEHDL 273

Length = 591

>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD

 Score = 55.3 bits (134), Expect = 1e-08
 Identities = 36/141 (25%), Positives = 65/141 (46%), Gaps = 9/141 (6%)

Query: 47  LTPREHLEF-YSRVRNVPSVLLNTI-------VNESLNKFALGHYSDREVRTLSGGNKRK 98
           LT  E+LE    R ++V + L   +       + E L    L   +DR    LS G K+ 
Sbjct: 92  LTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQW 151

Query: 99  LSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCT 158
           L   + L+ +P L+ LDEP +GM           + ++++    V++  H+ME   ++  
Sbjct: 152 LEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELL-KSLAGKHSVVVVEHDMEFVRSIAD 210

Query: 159 KLTIMVNGQFTCLGSATHLKS 179
           K+T++  G     GS   +++
Sbjct: 211 KVTVLHQGSVLAEGSLDQVQA 231

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 57.3 bits (139), Expect = 1e-08
 Identities = 40/131 (30%), Positives = 57/131 (43%), Gaps = 15/131 (11%)

Query: 34  IGYCPQ-FDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFAL-GHYSDREVRTL 91
           IGY  Q  D L+   T  E L                 V   L +F   G   ++ V  L
Sbjct: 387 IGYFDQHRDELDPDKTVLEEL------SEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVL 440

Query: 92  SGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE--GRCVILTSHN 149
           SGG K +L  A  LL  P L+ LDEPT+ +D  +   L    E A+ +  G  V+L SH+
Sbjct: 441 SGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEAL----EEALLDFEG-TVLLVSHD 495

Query: 150 MEECEALCTKL 160
               + + T++
Sbjct: 496 RYFLDRVATRI 506

Length = 530

>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system

 Score = 55.3 bits (134), Expect = 1e-08
 Identities = 34/110 (30%), Positives = 57/110 (51%), Gaps = 17/110 (15%)

Query: 67  LNTIVNESLNKFALGHYSDREV------RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSG 120
           L+  V E+L K AL      EV        LSGG +++L  A AL   P ++ LDEPTS 
Sbjct: 116 LDERVEEALRKAAL----WDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSA 171

Query: 121 MDPGARRFLWTCIERAVSEGR---CVILTSHNMEECEALCTKLTIMVNGQ 167
           +DP +       IE  ++E +    +++ +HNM++   +  +   ++NG+
Sbjct: 172 LDPISTA----KIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGR 217

Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227

>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 56.1 bits (135), Expect = 1e-08
 Identities = 42/158 (26%), Positives = 71/158 (44%), Gaps = 6/158 (3%)

Query: 48  TPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLG 107
           T  E L F      +P + +   V+ +L +  L  Y  R  +TLSGG  + ++ A  L  
Sbjct: 94  TVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTM 153

Query: 108 NPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 167
            P  +  DE TS +DP +   +   I++   +G+ ++  +HN+EE      ++ +M  G+
Sbjct: 154 EPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHD-ADRIIVMDRGK 212

Query: 168 FTCLGSATHLKSKSMALPVSGNDLGRGDPVRSELSRAL 205
               G   ++ S      VS   LG   P   EL+  L
Sbjct: 213 IVLEGEPENVLSD-----VSLQTLGLTPPSLIELAENL 245

Length = 274

>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 57.1 bits (139), Expect = 1e-08
 Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 8/88 (9%)

Query: 89  RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 148
           R LSGG +R+L  A ALL + PL+ LDEPT G+D    R +   +    ++ + V++ +H
Sbjct: 474 RQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELL-AEHAQNKTVLMITH 532

Query: 149 N---MEECEALCTKLTIMVNGQFTCLGS 173
               +E+ + +C    +M NGQ    G+
Sbjct: 533 RLTGLEQFDRIC----VMDNGQIIEQGT 556

Length = 574

>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 55.6 bits (134), Expect = 1e-08
 Identities = 34/90 (37%), Positives = 50/90 (55%), Gaps = 5/90 (5%)

Query: 67  LNTIVNESLNKFAL-GHYSDR---EVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 122
           L+TIV +SL   AL     DR      +LSGG +++L  A  L  NP +I +DEP S +D
Sbjct: 122 LDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALD 181

Query: 123 PGARRFLWTCIERAVSEGRCVILTSHNMEE 152
           P A   +   IE  + +   VI+ +HNM++
Sbjct: 182 PIATAKIEDLIED-LKKEYTVIIVTHNMQQ 210

Length = 253

>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 55.9 bits (135), Expect = 1e-08
 Identities = 53/227 (23%), Positives = 96/227 (42%), Gaps = 19/227 (8%)

Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
           L V+ L K Y    G    +  +S     G+   ++G +G+GK+T  + +    KP++G+
Sbjct: 7   LEVEDLHKRY----GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGS 62

Query: 403 AYVMNHSIRDSMD--------------LVRSYIGYCPQFDALNDRLTPREH-LEFYSRVR 447
             V    IR   D               +R+ +G   Q   L   +T  E+ +E    V 
Sbjct: 63  IRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVL 122

Query: 448 NVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSG 507
            V          + L K  +   +D     LSGG +++++ A AL   P ++  DEPTS 
Sbjct: 123 GVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSA 182

Query: 508 MDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 554
           +DP     +   ++    EGR +++ +H M     + + +  +  G+
Sbjct: 183 LDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGK 229

Length = 256

>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 55.8 bits (134), Expect = 1e-08
 Identities = 55/198 (27%), Positives = 89/198 (44%), Gaps = 19/198 (9%)

Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT------GAIKPTSGNAYVMNHSI 410
            T  A+  IS  + R +   ++G +G GK+T  K L       G +K   G       +I
Sbjct: 18  NTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVK-VEGVVDFFGQNI 76

Query: 411 RDS---MDLVRSYIGYCPQFDALND-RLTPREHLEFYSRVR-NVPSVLLNTIVNESLNKF 465
            D    ++ +R  IG    F   N   ++  E++ +  R+   +P   L+ IV  +L   
Sbjct: 77  YDPRININRLRRQIGMV--FQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGA 134

Query: 466 ALGHYS----DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIE 521
           AL        ++    LSGG +++L  A AL   P ++ +DEP S +DP A   +   I 
Sbjct: 135 ALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIH 194

Query: 522 RAVSEGRCVILTSHNMEE 539
              SE    I+T HNM++
Sbjct: 195 SLRSELTIAIVT-HNMQQ 211

Length = 259

>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 58/205 (28%), Positives = 87/205 (42%), Gaps = 37/205 (18%)

Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTT---TFKMLTGAIKP--TSGNAYVMNHSIR 411
           G K A+  I+  + + +   L+G +G GK+T   +   +   +      G        I 
Sbjct: 12  GEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIY 71

Query: 412 DS-MDLV--RSYIGYCPQ---------FDALNDRLTPREHLEFYSRVRNVPSVLLNTIVN 459
           D  +D+V  R  +G   Q         +D  N    PR H     +        L+ IV 
Sbjct: 72  DKKIDVVELRRRVGMVFQKPNPFPMSIYD--NIAYGPRLHGIKDKKE-------LDEIVE 122

Query: 460 ESLNKFAL-GHYSDREVR---TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRF 515
           ESL K AL     DR       LSGG +++L  A AL   P ++ LDEPTS +DP A   
Sbjct: 123 ESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATG- 181

Query: 516 LWTCIERAVSEGR---CVILTSHNM 537
               IE  + E +    +++ +HNM
Sbjct: 182 ---KIEELIQELKKKYTIVIVTHNM 203

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247

>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system

 Score = 55.7 bits (135), Expect = 2e-08
 Identities = 26/96 (27%), Positives = 52/96 (54%), Gaps = 1/96 (1%)

Query: 73  ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTC 132
           E+L    L  +  +    LSGG ++++  A AL  +P ++ +DE  S +DP  RR +   
Sbjct: 143 EALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDE 202

Query: 133 IERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQ 167
           + R  +E  + ++  +H+++E   L  ++ IM +G+
Sbjct: 203 LLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGR 238

This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269

>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional

 Score = 56.3 bits (136), Expect = 2e-08
 Identities = 24/94 (25%), Positives = 51/94 (54%)

Query: 82  HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGR 141
           H  ++ +  LSGGN++K+  +  L   P +I  DEPT G+D GA+  ++  + +   +G+
Sbjct: 401 HSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGK 460

Query: 142 CVILTSHNMEECEALCTKLTIMVNGQFTCLGSAT 175
            +++ S  + E   +C ++ +   G+ T + +  
Sbjct: 461 VILMVSSELPEIITVCDRIAVFCEGRLTQILTNR 494

Length = 510

>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional

 Score = 56.5 bits (137), Expect = 2e-08
 Identities = 53/217 (24%), Positives = 85/217 (39%), Gaps = 39/217 (17%)

Query: 361 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT---SGNAY-----VMNHSIRD 412
           A++ +S  V  GE   L G NGAGK+T  K+L+G + P     G        +   +IRD
Sbjct: 20  ALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSG-VYPHGTYEGEIIFEGEELQASNIRD 78

Query: 413 SMDLVRSYIGYCPQFDALNDRLTPREHL---------------EFYSRVRNVPSVLLNTI 457
           +    R+ I    Q  AL   L+  E++                 Y R +          
Sbjct: 79  TE---RAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQ---------- 125

Query: 458 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW 517
             + L +  L       V  L  G ++ +  A AL     L+ LDEPT+ +       L 
Sbjct: 126 --KLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLL 183

Query: 518 TCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 554
             I    + G   I  SH + E +A+   + ++ +G+
Sbjct: 184 DIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGR 220

Length = 506

>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 5/120 (4%)

Query: 63  PSVLLN----TIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPT 118
           P + LN      V  +  +  L  +  R    LSGG +++++ A  L+   P++ LDEP 
Sbjct: 98  PGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPF 157

Query: 119 SGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 177
           S +DP  R  +   + +   E    +++ +H+ E+   +  ++  + NG+    GS   L
Sbjct: 158 SALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQEL 217

Length = 231

>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional

 Score = 57.2 bits (138), Expect = 2e-08
 Identities = 39/122 (31%), Positives = 60/122 (49%), Gaps = 8/122 (6%)

Query: 35   GYCPQFDALNDRLTPREHLEFYSRVR---NVPSVLLNTIVNESLNKFALGHYSDREV--- 88
            GYC Q D  + ++T RE L + + +R    V        V+E +    L +  D  V   
Sbjct: 956  GYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLP 1015

Query: 89   --RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILT 146
                LS   +++L+ A+ L+ NP +IF+DEPTSG+D  A   +   +   V  GR V+ T
Sbjct: 1016 GVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1075

Query: 147  SH 148
             H
Sbjct: 1076 IH 1077

Length = 1470

>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional

 Score = 57.1 bits (138), Expect = 2e-08
 Identities = 51/163 (31%), Positives = 73/163 (44%), Gaps = 19/163 (11%)

Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDL 416
           G +  ++ I   +  G   GLLG NGAGK+T  K+L G + P SG    +   I+     
Sbjct: 323 GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEI-GLAKGIK----- 376

Query: 417 VRSYIGYCP--QFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFAL-GHYSDR 473
               +GY    Q + L    +P +HL      R  P  L   +  + L  F   G     
Sbjct: 377 ----LGYFAQHQLEFLRADESPLQHL-----ARLAPQELEQKL-RDYLGGFGFQGDKVTE 426

Query: 474 EVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFL 516
           E R  SGG K +L  A+ +   P L+ LDEPT+ +D   R+ L
Sbjct: 427 ETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQAL 469

Length = 638

>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins

 Score = 54.9 bits (133), Expect = 2e-08
 Identities = 57/190 (30%), Positives = 87/190 (45%), Gaps = 24/190 (12%)

Query: 360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVR 418
           P +  +S  +  G+   L+G +G GK+T   +L     PTSG   +    IRD ++  +R
Sbjct: 17  PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLR 76

Query: 419 SYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGH--------- 469
           S IG   Q   L D  T  E++ +         V       E   K A  H         
Sbjct: 77  SQIGLVSQEPVLFDG-TIAENIRYGKPDATDEEV-------EEAAKKANIHDFIMSLPDG 128

Query: 470 YSDREV----RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS 525
           Y D  V      LSGG K++++ A ALL NP ++ LDE TS +D  + + +   ++RA  
Sbjct: 129 Y-DTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRA-M 186

Query: 526 EGRCVILTSH 535
           +GR  I+ +H
Sbjct: 187 KGRTTIVIAH 196

MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238

>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional

 Score = 55.2 bits (133), Expect = 2e-08
 Identities = 58/234 (24%), Positives = 93/234 (39%), Gaps = 29/234 (12%)

Query: 355 SKGTKPAVNQISFGV-GR------------GECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
              T  A+  +SF V GR            G+  GL+G NG+GK+T  KML     P+ G
Sbjct: 7   HSDTTFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEG 66

Query: 402 NAYVMNHSIR--DSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVP--------S 451
              +    +    S    R  + Y PQ     + +T RE +     +   P         
Sbjct: 67  EILLDAQPLESWSSKAFARK-VAYLPQQLPAAEGMTVRELVA----IGRYPWHGALGRFG 121

Query: 452 VLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPG 511
                 V E+++   L   + R V +LSGG +++   A+ +  +   + LDEPTS +D  
Sbjct: 122 AADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIA 181

Query: 512 ARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
            +  +   + R   E G  VI   H++      C  L  +  G+    G+   L
Sbjct: 182 HQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEL 235

Length = 265

>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 55.0 bits (132), Expect = 2e-08
 Identities = 61/237 (25%), Positives = 102/237 (43%), Gaps = 43/237 (18%)

Query: 355 SKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKML------------TGAIKPTSGN 402
           S G   A++ IS      E   L+G +G GK+T  + L            TG IK    N
Sbjct: 13  SYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQN 72

Query: 403 AYVMNHSIRDSMDLV--RSYIGYCPQFDALNDRLTP-----REHLEFYSRVRNVPSV-LL 454
            Y         MDLV  R  +G   Q      + TP      +++ +  ++  V    L+
Sbjct: 73  IY------GSKMDLVELRKEVGMVFQ------QPTPFPFSVYDNVAYGLKIAGVKDKELI 120

Query: 455 NTIVNESLNKFALGHYS----DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDP 510
           +  V ESL + A+   +    DR  +  SGG ++++  A AL   P ++ LDEPTS +DP
Sbjct: 121 DQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDP 180

Query: 511 GARRFLWTCIERAVSEGR---CVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
            +     + IE  + E +     I+ +HN+++   +  +   ++NG     G    +
Sbjct: 181 ISS----SEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233

Length = 251

>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein

 Score = 55.9 bits (135), Expect = 2e-08
 Identities = 53/211 (25%), Positives = 92/211 (43%), Gaps = 26/211 (12%)

Query: 361 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSY 420
            V+  S  +  GE   L+GL+G+GK+T  + + G    + G+  V       S+D+    
Sbjct: 39  GVHNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLV--KDGDGSVDVAN-- 94

Query: 421 IGYCP-----------------QFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLN 463
              C                  QF AL    T  E++ F   ++ +P       V+E L 
Sbjct: 95  ---CDAATLRRLRTHRVSMVFQQF-ALLPWRTVEENVAFGLEMQGMPKAERRKRVDEQLE 150

Query: 464 KFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW-TCIER 522
              L  ++DR+   LSGG ++++  A A     P++ +DEP S +DP  R  L    +E 
Sbjct: 151 LVGLAQWADRKPGELSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLEL 210

Query: 523 AVSEGRCVILTSHNMEECEALCTKLTIMVNG 553
                + ++  SH+++E   +  ++ IM  G
Sbjct: 211 QSKLKKTIVFVSHDLDEALKIGNRIAIMEGG 241

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382

>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein

 Score = 56.4 bits (136), Expect = 2e-08
 Identities = 48/189 (25%), Positives = 73/189 (38%), Gaps = 60/189 (31%)

Query: 352 YANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG---------- 401
           +ANS      V  +SF    G+   ++G  GAGKTT   +L     PT G          
Sbjct: 344 FANSS---QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDIN 400

Query: 402 ----------------NAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRL-----TPREHL 440
                           +A + N SIR+++ L R          A ++ +         H 
Sbjct: 401 TVTRESLRKSIATVFQDAGLFNRSIRENIRLGRE--------GATDEEVYEAAKAAAAHD 452

Query: 441 EFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIF 500
               R         +T+V E  N+             LSGG +++L+ A A+L N P++ 
Sbjct: 453 FILKRSNG-----YDTLVGERGNR-------------LSGGERQRLAIARAILKNAPILV 494

Query: 501 LDEPTSGMD 509
           LDE TS +D
Sbjct: 495 LDEATSALD 503

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585

>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter

 Score = 54.1 bits (131), Expect = 3e-08
 Identities = 38/140 (27%), Positives = 65/140 (46%), Gaps = 2/140 (1%)

Query: 39  QFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRK 98
            F+ L+ R T  E++     +  VP   +   V E L    L   +D     LSGG K++
Sbjct: 90  HFNLLSSR-TVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQR 148

Query: 99  LSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALC 157
           +  A AL  NP ++  DE TS +DP   + +   +     E G  ++L +H ME  + +C
Sbjct: 149 VGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRIC 208

Query: 158 TKLTIMVNGQFTCLGSATHL 177
            ++ +M  G+    G+   +
Sbjct: 209 DRVAVMEKGEVVEEGTVEEV 228

MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233

>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional

 Score = 55.1 bits (133), Expect = 3e-08
 Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 1/92 (1%)

Query: 62  VPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGM 121
           +P   +   V+ESL K  +  Y       LSGG K++++ A  L   P  I  DEPT+ +
Sbjct: 116 IPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAML 175

Query: 122 DPGARRFLWTCIERAVSE-GRCVILTSHNMEE 152
           DP  RR +   I+    + G  +IL +H MEE
Sbjct: 176 DPSGRREVVNTIKELNKKYGITIILITHYMEE 207

Length = 280

>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional

 Score = 56.1 bits (136), Expect = 3e-08
 Identities = 29/77 (37%), Positives = 46/77 (59%)

Query: 91  LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 150
           LSGGN++K   A  LL NP ++ LDEPT G+D GA+  ++  I + V +G  +I+ S  +
Sbjct: 406 LSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSEL 465

Query: 151 EECEALCTKLTIMVNGQ 167
            E   L  ++ +M  G+
Sbjct: 466 PEVLGLSDRVLVMHEGK 482

Length = 506

>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 54.9 bits (132), Expect = 3e-08
 Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 21/122 (17%)

Query: 34  IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSG 93
           I Y P+   +ND+    E +E     +++    L   V++ L+K ALG         LSG
Sbjct: 140 IAYGPRLHGINDKKQLEEIVE-----KSLRKAALWDEVSDRLDKNALG---------LSG 185

Query: 94  GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGR---CVILTSHNM 150
           G +++L  A  L   P ++ LDEPTS +DP A       IE  + E R    +++ +HNM
Sbjct: 186 GQQQRLCVARTLAVEPEILLLDEPTSALDPKAT----AKIEDLIQELRGSYTIMIVTHNM 241

Query: 151 EE 152
           ++
Sbjct: 242 QQ 243

Length = 286

>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 54.9 bits (132), Expect = 3e-08
 Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 21/122 (17%)

Query: 421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSG 480
           I Y P+   +ND+    E +E     +++    L   V++ L+K ALG         LSG
Sbjct: 140 IAYGPRLHGINDKKQLEEIVE-----KSLRKAALWDEVSDRLDKNALG---------LSG 185

Query: 481 GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGR---CVILTSHNM 537
           G +++L  A  L   P ++ LDEPTS +DP A       IE  + E R    +++ +HNM
Sbjct: 186 GQQQRLCVARTLAVEPEILLLDEPTSALDPKAT----AKIEDLIQELRGSYTIMIVTHNM 241

Query: 538 EE 539
           ++
Sbjct: 242 QQ 243

Length = 286

>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional

 Score = 55.9 bits (135), Expect = 3e-08
 Identities = 56/224 (25%), Positives = 92/224 (41%), Gaps = 23/224 (10%)

Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI----RD 412
                V  ISF +  GE  GL+G +G+GK+TT   L   I  + G  +     +    R 
Sbjct: 297 DHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLNRR 355

Query: 413 SMDLVRSYIGYCPQ--FDALNDRLTPR----EHLEFYSRVRNVPSVLLNTIVNESLNKFA 466
            +  VR  I    Q    +LN RL       E L  +    +        I    + +  
Sbjct: 356 QLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVI--AVMEEVG 413

Query: 467 LGHYSDREVR-----TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIE 521
           L    D E R       SGG +++++ A AL+  P LI LDEPTS +D   +  +   ++
Sbjct: 414 L----DPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLK 469

Query: 522 RAVSEGRCV-ILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
               + +   +  SH++    ALC ++ ++  G+    G    +
Sbjct: 470 SLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERV 513

Length = 529

>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional

 Score = 55.3 bits (134), Expect = 3e-08
 Identities = 55/198 (27%), Positives = 89/198 (44%), Gaps = 28/198 (14%)

Query: 377 LLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLV-----RSYIGYCPQFDALN 431
           + G +GAGKT+    ++G  +P  G   +    + D+   +     +  IGY  Q DA  
Sbjct: 29  IFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQ-DA-- 85

Query: 432 DRLTPREHLEFYSRVR--------NVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNK 483
            RL P  H   Y +VR               + IV  +L    +    DR   +LSGG K
Sbjct: 86  -RLFP--H---Y-KVRGNLRYGMAKSMVAQFDKIV--AL--LGIEPLLDRYPGSLSGGEK 134

Query: 484 RKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL-TSHNMEECEA 542
           ++++   ALL  P L+ +DEP + +D   +R L   +ER   E    IL  SH+++E   
Sbjct: 135 QRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILR 194

Query: 543 LCTKLTIMVNGQFTCLGS 560
           L  ++ ++  G+    G 
Sbjct: 195 LADRVVVLEQGKVKAFGP 212

Length = 352

>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional

 Score = 54.2 bits (131), Expect = 3e-08
 Identities = 56/227 (24%), Positives = 98/227 (43%), Gaps = 12/227 (5%)

Query: 345 VKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 404
           +  +   Y    G   A+  I+    +GE   LLG +GAGK++  ++L     P SG   
Sbjct: 5   LNGINCFY----GAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLN 60

Query: 405 VMNHSIRDS-------MDLVRSYIGYCPQFDALNDRLTPREHL-EFYSRVRNVPSVLLNT 456
           +  +    S       +  +R  +G   Q   L   LT +++L E   RV  +       
Sbjct: 61  IAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALA 120

Query: 457 IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFL 516
              + L +  L  Y+DR    LSGG +++++ A AL+  P ++  DEPT+ +DP     +
Sbjct: 121 RAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQI 180

Query: 517 WTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATH 563
            + I      G   ++ +H +E      +++  M NG     G A+ 
Sbjct: 181 VSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC 227

Length = 242

>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit

 Score = 55.8 bits (135), Expect = 4e-08
 Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 89  RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 148
             LSGG +++L+ A ALL + P++ LDEPT  +D      L   +  A   GR V+L +H
Sbjct: 470 ARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDL-LAALSGRTVVLITH 528

Query: 149 N 149
           +
Sbjct: 529 H 529

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530

>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D

 Score = 53.6 bits (129), Expect = 4e-08
 Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 1/99 (1%)

Query: 69  TIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRF 128
            IV E +    L   +D+    LSGG K++++ A AL   P ++ LDEP   +D   R  
Sbjct: 93  AIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGN 152

Query: 129 LWTCIERAVSEGRC-VILTSHNMEECEALCTKLTIMVNG 166
           L   + +   E R  V++ +H+++E   L  ++ ++ NG
Sbjct: 153 LQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNG 191

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score = 55.7 bits (135), Expect = 4e-08
 Identities = 56/215 (26%), Positives = 93/215 (43%), Gaps = 33/215 (15%)

Query: 361 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI----RDSMDL 416
           AV+ IS  + RG+  GL+G +G+GK+T    L   I P+ G        I    R  M  
Sbjct: 302 AVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLI-PSQGEIRFDGQDIDGLSRKEMRP 360

Query: 417 VRSYIGYCPQ--FDALNDRLTPRE-----------HLEFYSRVRNVPSVLLNTIVNESLN 463
           +R  +    Q  + +L+ R+T  +            L    R + V   L        L+
Sbjct: 361 LRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEAL----EEVGLD 416

Query: 464 KFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIE-- 521
                 Y        SGG +++++ A AL+  P LI LDEPTS +D   +      ++  
Sbjct: 417 PATRNRYPHE----FSGGQRQRIAIARALILKPELILLDEPTSALDRSVQA---QVLDLL 469

Query: 522 RAVSE--GRCVILTSHNMEECEALCTKLTIMVNGQ 554
           R + +  G   +  SH++    ALC ++ +M +G+
Sbjct: 470 RDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGK 504

Length = 534

>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 54.8 bits (132), Expect = 4e-08
 Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 5/104 (4%)

Query: 67  LNTIVNESLNKFAL----GHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 122
           ++  V ESL + AL        D     LSGG +++L  A A+  +P +I +DEP S +D
Sbjct: 153 IDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALD 212

Query: 123 PGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNG 166
           P A   +   IE    E   VI+T HNM++   +  K  + + G
Sbjct: 213 PVATSKIEDLIEELAEEYTVVIVT-HNMQQAARISDKTAVFLTG 255

Length = 285

>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 54.8 bits (132), Expect = 4e-08
 Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 5/104 (4%)

Query: 454 LNTIVNESLNKFAL----GHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 509
           ++  V ESL + AL        D     LSGG +++L  A A+  +P +I +DEP S +D
Sbjct: 153 IDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALD 212

Query: 510 PGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNG 553
           P A   +   IE    E   VI+T HNM++   +  K  + + G
Sbjct: 213 PVATSKIEDLIEELAEEYTVVIVT-HNMQQAARISDKTAVFLTG 255

Length = 285

>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein

 Score = 54.1 bits (130), Expect = 5e-08
 Identities = 32/121 (26%), Positives = 61/121 (50%)

Query: 70  IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFL 129
           +V+ +L +  L H +DR++ TLSGG ++++  A AL   P L+ LDEPT+ +D  A+   
Sbjct: 117 VVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLET 176

Query: 130 WTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKSMALPVSGN 189
              +    + G  V+   H++    + C  + ++  G+    G    + + ++   V G 
Sbjct: 177 LALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLTPALIRAVYGV 236

Query: 190 D 190
           D
Sbjct: 237 D 237

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256

>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

 Score = 55.1 bits (133), Expect = 5e-08
 Identities = 26/78 (33%), Positives = 44/78 (56%)

Query: 90  TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN 149
           +LSGGN++K+     LL  P ++ LDEPT G+D GA+  ++  I     + + +I+ S  
Sbjct: 391 SLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSE 450

Query: 150 MEECEALCTKLTIMVNGQ 167
           M E   +  ++ +M NG 
Sbjct: 451 MPELLGITDRILVMSNGL 468

Length = 491

>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component

 Score = 53.3 bits (129), Expect = 5e-08
 Identities = 49/205 (23%), Positives = 78/205 (38%), Gaps = 42/205 (20%)

Query: 365 ISFGVGRGECFGLLGLNGAGKTTTFKMLTG--AIKPTSGNAYVMNHSIRD-SMDL-VRSY 420
           ++  + +GE   L+G NG+GK+T  K + G    + T G        I D   +   R  
Sbjct: 19  VNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLG 78

Query: 421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTI---VNESLNKFALGHYSDREVRT 477
           I    Q+        P E          +P V        VNE                 
Sbjct: 79  IFLAFQY--------PPE----------IPGVKNADFLRYVNEGF--------------- 105

Query: 478 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 537
            SGG K++      LL  P L  LDEP SG+D  A R +   I +   EG+ V++ +H  
Sbjct: 106 -SGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQ 164

Query: 538 EECEAL-CTKLTIMVNGQFTCLGSA 561
              + +   ++ ++ +G+    G  
Sbjct: 165 RLLDYIKPDRVHVLYDGRIVKSGDK 189

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200

>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR)

 Score = 55.7 bits (134), Expect = 5e-08
 Identities = 51/210 (24%), Positives = 88/210 (41%), Gaps = 43/210 (20%)

Query: 360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRS 419
           P +  ISF + +G+   + G  G+GK++   M+ G ++P+ G    + HS R        
Sbjct: 440 PVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGK---IKHSGR-------- 488

Query: 420 YIGYCPQFDALNDRLTPREHLEF---YSRVRNVPSVLLNTIVNESLNKFALGHYSDREVR 476
            I + PQ   +    T ++++ F   Y   R   SV+    + E +  F      D+ V 
Sbjct: 489 -ISFSPQTSWIMPG-TIKDNIIFGLSYDEYR-YTSVIKACQLEEDIALFP---EKDKTVL 542

Query: 477 -----TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVI 531
                TLSGG + ++S A A+  +  L  LD P + +D           E+ + E  C+ 
Sbjct: 543 GEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLD--------VVTEKEIFE-SCL- 592

Query: 532 LTSHNMEECEALCTKLTIMVNGQFTCLGSA 561
                   C+ +  K  I+V  +   L  A
Sbjct: 593 --------CKLMSNKTRILVTSKLEHLKKA 614

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490

>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

 Score = 54.0 bits (130), Expect = 5e-08
 Identities = 50/172 (29%), Positives = 78/172 (45%), Gaps = 33/172 (19%)

Query: 361 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSY 420
           AV  +SF +  G+   ++G NG+GK+T  KML G I+PTSG   + +H       L    
Sbjct: 28  AVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHP------LHFGD 81

Query: 421 IGYCPQ-----FDALNDRLTPREHLEFYSRVRNVPSVLLNT---------IVNESLNKFA 466
             Y  Q     F   +  L PR+ +   S++ + P + LNT          + E+L +  
Sbjct: 82  YSYRSQRIRMIFQDPSTSLNPRQRI---SQILDFP-LRLNTDLEPEQREKQIIETLRQVG 137

Query: 467 L-----GHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR 513
           L      +Y       L+ G K++L  A AL+  P +I  DE  + +D   R
Sbjct: 138 LLPDHASYYP----HMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMR 185

Length = 267

>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 53.9 bits (130), Expect = 6e-08
 Identities = 30/98 (30%), Positives = 55/98 (56%), Gaps = 2/98 (2%)

Query: 71  VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDP-GARRFL 129
           V E+L    +  + ++    LSGG K++++ A  L   P +I LDEPTSG+DP GA + +
Sbjct: 118 VKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIM 177

Query: 130 WTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 167
               +    EG  +I+++H+++       K+ +M +G+
Sbjct: 178 KLLYDLN-KEGITIIISTHDVDLVPVYADKVYVMSDGK 214

Length = 275

>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F

 Score = 51.7 bits (125), Expect = 6e-08
 Identities = 27/59 (45%), Positives = 34/59 (57%), Gaps = 5/59 (8%)

Query: 91  LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSH 148
           LSGG K +L+ A  LL NP L+ LDEPT+ +D  +   L    E A+ E    VIL SH
Sbjct: 71  LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEAL----EEALKEYPGTVILVSH 125

Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144

>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C

 Score = 53.4 bits (129), Expect = 6e-08
 Identities = 24/60 (40%), Positives = 38/60 (63%), Gaps = 1/60 (1%)

Query: 91  LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 150
           LSGG K++++ A A+L NPP++ LDE TS +D    R +   +   VS+GR  I+ +H +
Sbjct: 138 LSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRD-VSKGRTTIVIAHRL 196

ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236

>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed

 Score = 54.8 bits (132), Expect = 6e-08
 Identities = 35/152 (23%), Positives = 69/152 (45%), Gaps = 6/152 (3%)

Query: 69  TIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRF 128
             V  ++ +  +  ++DR V +LSGG ++++  A AL    P++ LDEPT+ +D   +  
Sbjct: 118 AAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVR 177

Query: 129 LWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLG------SATHLKSKSM 182
               + R V +G+  +   H+++     C +L ++ +G+    G      +A  L++   
Sbjct: 178 TLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTADTLRAAFD 237

Query: 183 ALPVSGNDLGRGDPVRSELSRALNDGSGSGIR 214
           A    G D   G P  + L       + +  R
Sbjct: 238 ARTAVGTDPATGAPTVTPLPDPDRTEAAADTR 269

Length = 402

>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 53.9 bits (130), Expect = 6e-08
 Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 5/116 (4%)

Query: 91  LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHN 149
           LSGG  R+++ A  L   P ++ LDEPT+G+DP  R+ +     +   E G   +L +H+
Sbjct: 146 LSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHS 205

Query: 150 MEECEALCTKLTIMVNGQFTCLGSATHLKSKSMALPVSGNDLGRGDPVRSELSRAL 205
           ME+      ++ +M  G     G+   + +    L   G DL    P   +  RAL
Sbjct: 206 MEDAARYADQIVVMHKGTVFLQGTPREIFADPDELEAIGLDL----PETVKFKRAL 257

Length = 290

>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein

 Score = 53.3 bits (129), Expect = 6e-08
 Identities = 43/162 (26%), Positives = 72/162 (44%), Gaps = 8/162 (4%)

Query: 355 SKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM 414
                P +  ISF +  GE  G++G  G+GK++    L   ++ +SG+  +    I   +
Sbjct: 13  RPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDIS-KI 71

Query: 415 DL--VRSYIGYCPQFDALNDRLTPREHLEFYSRVRN--VPSVLLNTIVNESLNKFALGHY 470
            L  +RS I   PQ D +    T R +L+ +    +  +   L    + E +     G  
Sbjct: 72  GLHDLRSRISIIPQ-DPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLD 130

Query: 471 SDREVR--TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDP 510
           +  E     LS G ++ L  A ALL    ++ LDE T+ +DP
Sbjct: 131 TVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDP 172

The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221

>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C

 Score = 54.1 bits (130), Expect = 6e-08
 Identities = 46/192 (23%), Positives = 79/192 (41%), Gaps = 30/192 (15%)

Query: 326 VRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGK 385
            + ++E  +    S D  +      +        P +  I+  + +GE   + G  G+GK
Sbjct: 22  EKAKQENNDRKHSSDDNNLFFSNLCLVGA-----PVLKNINLKIEKGEMLAITGSTGSGK 76

Query: 386 TTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEF--- 442
           T+   ++ G ++P+ G    + HS R         I +  QF  +    T +E++ F   
Sbjct: 77  TSLLMLILGELEPSEG---KIKHSGR---------ISFSSQFSWIMPG-TIKENIIFGVS 123

Query: 443 YSRVRNVPSVLLNTIVNESLNKFALGHYSDREVR-----TLSGGNKRKLSTAIALLGNPP 497
           Y   R   SV+    + E + KF      D  V      TLSGG + ++S A A+  +  
Sbjct: 124 YDEYR-YKSVVKACQLEEDITKFP---EKDNTVLGEGGITLSGGQRARISLARAVYKDAD 179

Query: 498 LIFLDEPTSGMD 509
           L  LD P   +D
Sbjct: 180 LYLLDSPFGYLD 191

The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282

>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional

 Score = 55.1 bits (133), Expect = 6e-08
 Identities = 49/198 (24%), Positives = 85/198 (42%), Gaps = 21/198 (10%)

Query: 352 YANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 411
           Y + +     +  IS  +  GE   ++G +G+GK+T   +L    KPTSG   V    + 
Sbjct: 14  YPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVA 73

Query: 412 DSMD------LVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNES---- 461
             +D      L R + G+  Q   L   LT  +++E       VP+V       +     
Sbjct: 74  T-LDADALAQLRREHFGFIFQRYHLLSHLTAAQNVE-------VPAVYAGLERKQRLLRA 125

Query: 462 ---LNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT 518
              L +  L    + +   LSGG ++++S A AL+    +I  DEPT  +D  +   +  
Sbjct: 126 QELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMA 185

Query: 519 CIERAVSEGRCVILTSHN 536
            + +    G  VI+ +H+
Sbjct: 186 ILHQLRDRGHTVIIVTHD 203

Length = 648

>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C

 Score = 52.9 bits (127), Expect = 7e-08
 Identities = 44/201 (21%), Positives = 91/201 (45%), Gaps = 27/201 (13%)

Query: 358 TKPAVN---QISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-S 413
           T+P       +SF +  GE   L+G +G+GK+T   +L    +P  G   +    I    
Sbjct: 23  TRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYE 82

Query: 414 MDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIV--------NESLNKF 465
              + S +    Q   L  R + ++++ +      + S     +         +  +++ 
Sbjct: 83  HKYLHSKVSLVGQEPVLFAR-SLQDNIAY-----GLQSCSFECVKEAAQKAHAHSFISEL 136

Query: 466 ALGHYSDREVR--TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERA 523
           A G+ ++   +   LSGG K++++ A AL+ NP ++ LDE TS +D  + +     +++A
Sbjct: 137 ASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQ----QVQQA 192

Query: 524 VSEG---RCVILTSHNMEECE 541
           + +    R V++ +H +   E
Sbjct: 193 LYDWPERRTVLVIAHRLSTVE 213

TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226

>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 53.3 bits (128), Expect = 8e-08
 Identities = 35/131 (26%), Positives = 62/131 (47%), Gaps = 1/131 (0%)

Query: 47  LTPREHL-EFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIAL 105
           LT +E+L E   RV  +          + L +  L  Y+DR    LSGG +++++ A AL
Sbjct: 97  LTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARAL 156

Query: 106 LGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVN 165
           +  P ++  DEPT+ +DP     + + I+     G   ++ +H +E      +++  M N
Sbjct: 157 MMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMEN 216

Query: 166 GQFTCLGSATH 176
           G     G A+ 
Sbjct: 217 GHIVEQGDASC 227

Length = 242

>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

 Score = 53.3 bits (128), Expect = 8e-08
 Identities = 43/185 (23%), Positives = 76/185 (41%), Gaps = 22/185 (11%)

Query: 365 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV----MNHSIRDSMDLVRSY 420
           +S  V  GE   L+G NGAGK+T    + G     SG+       +       +   R+Y
Sbjct: 18  LSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAY 76

Query: 421 IGYCPQFDALNDRLTPREHLE-FYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLS 479
                    L+ + TP   +  ++    + P      ++N+     AL     R    LS
Sbjct: 77  ---------LSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLS 127

Query: 480 GGNKRKLSTAIALL-----GNPP--LIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL 532
           GG  +++  A  +L      NP   L+ LDEP + +D   +  L   +     +G  +++
Sbjct: 128 GGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVM 187

Query: 533 TSHNM 537
           +SH++
Sbjct: 188 SSHDL 192

Length = 248

>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional

 Score = 54.6 bits (132), Expect = 9e-08
 Identities = 58/209 (27%), Positives = 95/209 (45%), Gaps = 15/209 (7%)

Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI-----R 411
           G K A++  +  V  G    L+G NGAGK+T  K+LTG     +G+   +   +     +
Sbjct: 16  GVK-ALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPK 74

Query: 412 DSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSR--VRNVPSVLLNTIVNES---LNKFA 466
            S +   + IG   Q   L  +LT  E++ F  R  V     +    +  E+   L +  
Sbjct: 75  SSQE---AGIGIIHQELNLIPQLTIAENI-FLGREFVNRFGRIDWKKMYAEADKLLARLN 130

Query: 467 LGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE 526
           L   SD+ V  LS G ++ +  A  L     +I +DEPT  +       L+  I    S+
Sbjct: 131 LRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQ 190

Query: 527 GRCVILTSHNMEECEALCTKLTIMVNGQF 555
           GR ++  SH ++E   +C  +T+  +GQF
Sbjct: 191 GRGIVYISHRLKEIFEICDDVTVFRDGQF 219

Length = 501

>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional

 Score = 54.9 bits (132), Expect = 9e-08
 Identities = 42/127 (33%), Positives = 62/127 (48%), Gaps = 10/127 (7%)

Query: 31  LSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVL---LNTIVNES------LNKFALG 81
           L   G+  Q D L   LT RE L F S +R +P  L      +V ES      L K    
Sbjct: 139 LKRTGFVTQDDILYPHLTVRETLVFCSLLR-LPKSLTKQEKILVAESVISELGLTKCENT 197

Query: 82  HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGR 141
              +  +R +SGG ++++S A  +L NP L+ LDEPTSG+D  A   L   +     +G+
Sbjct: 198 IIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGK 257

Query: 142 CVILTSH 148
            ++ + H
Sbjct: 258 TIVTSMH 264

Length = 659

>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 53.5 bits (128), Expect = 9e-08
 Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 5/94 (5%)

Query: 83  YSDREVRTLSGGNKRKLSTA--IALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE- 139
           Y  R    LSGG KR+++ A  IA+ GN   + LDEPT G+DP          ER   E 
Sbjct: 143 YVKRSPFELSGGQKRRVALAGIIAMDGNT--LVLDEPTGGLDPKGEEDFINLFERLNKEY 200

Query: 140 GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 173
            + +I+ +HNM++   +  ++ +M  G+   +GS
Sbjct: 201 KKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGS 234

Length = 289

>gnl|CDD|222036 pfam13304, AAA_21, AAA domain

 Score = 53.2 bits (127), Expect = 9e-08
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 3/83 (3%)

Query: 70  IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALL---GNPPLIFLDEPTSGMDPGAR 126
           +V     +  L       ++ +S G KR L+  +ALL       L+ +DEP +G+ P   
Sbjct: 169 LVKRLFLESDLLRLLKLLIKGISDGTKRLLALLLALLSALPKGSLLLIDEPENGLHPKLL 228

Query: 127 RFLWTCIERAVSEGRCVILTSHN 149
           R L   ++    +G  +I T+H+
Sbjct: 229 RKLVELLKELSEKGAQLIFTTHS 251

Length = 256

>gnl|CDD|222036 pfam13304, AAA_21, AAA domain

 Score = 53.2 bits (127), Expect = 9e-08
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 3/83 (3%)

Query: 457 IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALL---GNPPLIFLDEPTSGMDPGAR 513
           +V     +  L       ++ +S G KR L+  +ALL       L+ +DEP +G+ P   
Sbjct: 169 LVKRLFLESDLLRLLKLLIKGISDGTKRLLALLLALLSALPKGSLLLIDEPENGLHPKLL 228

Query: 514 RFLWTCIERAVSEGRCVILTSHN 536
           R L   ++    +G  +I T+H+
Sbjct: 229 RKLVELLKELSEKGAQLIFTTHS 251

Length = 256

>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional

 Score = 54.5 bits (132), Expect = 9e-08
 Identities = 47/179 (26%), Positives = 79/179 (44%), Gaps = 40/179 (22%)

Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
           L V+ L K +       P    ++  +  GE   ++G NG GKTT  + L G ++P SG 
Sbjct: 320 LEVENLTKGF----DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSG- 374

Query: 403 AYVMNHSIRDSMDLVRSYIGYCPQ-----FDALNDRLTPREHLEFYSR-------VRNVP 450
                 +++ S +   + IGY  Q     F+  ND LT  + +  + +       VR   
Sbjct: 375 ------TVKWSEN---ANIGYYAQDHAYDFE--ND-LTLFDWMSQWRQEGDDEQAVRGTL 422

Query: 451 SVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 509
             LL +   + + K          V+ LSGG K ++     ++  P ++ +DEPT+ MD
Sbjct: 423 GRLLFS--QDDIKK---------SVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMD 470

Length = 530

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 54.6 bits (132), Expect = 1e-07
 Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 5/76 (6%)

Query: 85  DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC-V 143
           DR V +LSGG +R+++ A ALL  P L+ LDEPT+ +D  +  +L    E  +      V
Sbjct: 148 DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWL----EDYLKRYPGTV 203

Query: 144 ILTSHNMEECEALCTK 159
           I+ SH+    + + T 
Sbjct: 204 IVVSHDRYFLDNVATH 219

Length = 530

>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 2/81 (2%)

Query: 89  RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 148
           R  SGG +++L+ A  LL + P++ LDEPT G+DP   R L + I   V + + +I  +H
Sbjct: 97  RRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFE-VLKDKTLIWITH 155

Query: 149 NMEECEALCTKLTIMVNGQFT 169
           ++   E +  K+  + NG+  
Sbjct: 156 HLTGIEHM-DKILFLENGKII 175

The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178

>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 2/96 (2%)

Query: 73  ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTC 132
             L        SDR +  LSGG ++ LS  +A L  P ++ LDE T+ +DP    F+   
Sbjct: 132 ARLGLGLENRLSDR-IGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMEL 190

Query: 133 IERAVSEGR-CVILTSHNMEECEALCTKLTIMVNGQ 167
             + V E +   ++ +HNME+      +L ++ +G+
Sbjct: 191 TAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGK 226

Length = 263

>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 54.2 bits (131), Expect = 1e-07
 Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 2/93 (2%)

Query: 89  RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 148
             LSGG  ++L+ A ALL    L+ LDEPT+ +D    + +   ++   ++ + V++ +H
Sbjct: 455 AGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQEL-AKQKTVLVITH 513

Query: 149 NMEECEALCTKLTIMVNGQFTCLGSATHLKSKS 181
            +E+  A   ++ ++ NG+    G+   L  K 
Sbjct: 514 RLEDA-ADADRIVVLDNGRLVEQGTHEELSEKQ 545

Length = 559

>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein

 Score = 53.7 bits (129), Expect = 1e-07
 Identities = 28/77 (36%), Positives = 45/77 (58%)

Query: 91  LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 150
           LSGGN++K   A  LL NP ++ LDEPT G+D GA+  ++  I +   EG  +I+ S  +
Sbjct: 404 LSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSEL 463

Query: 151 EECEALCTKLTIMVNGQ 167
            E   L  ++ ++  G+
Sbjct: 464 AEVLGLSDRVLVIGEGK 480

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500

>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system

 Score = 52.1 bits (125), Expect = 1e-07
 Identities = 26/111 (23%), Positives = 53/111 (47%), Gaps = 5/111 (4%)

Query: 62  VPSVLLNTI----VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEP 117
            P + L       +  +L +  L     R    LSGG +++++ A  L+ + P++ LDEP
Sbjct: 96  SPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEP 155

Query: 118 TSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQ 167
            + +DP  R  +   +    +E    V++ +H  E+ + L  ++  + NG+
Sbjct: 156 FAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGR 206

Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 53.2 bits (127), Expect = 1e-07
 Identities = 59/229 (25%), Positives = 98/229 (42%), Gaps = 32/229 (13%)

Query: 359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY-----VMNHSIRDS 413
           K  ++Q+S G        L+G  G+GKTT  + L       SG  Y     +   SI + 
Sbjct: 34  KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNY 93

Query: 414 MDLV--RSYIGYCPQ------FDALND--------RLTPREHLEFYSRVRNVPSVLLNTI 457
            D++  R  +G   Q         +++        +L PR+     ++ R +  V L   
Sbjct: 94  RDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQAR-LTEVGLWDA 152

Query: 458 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW 517
           V + L        SD   R LSGG ++ L  A  L  NP ++ LDEPTS +DP     + 
Sbjct: 153 VKDRL--------SDSPFR-LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIE 203

Query: 518 TCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
             I R++++   VI+ +HN+ +   +  +  +  +G+    G    L S
Sbjct: 204 EFI-RSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFS 251

Length = 276

>gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50

 Score = 52.2 bits (126), Expect = 1e-07
 Identities = 48/197 (24%), Positives = 69/197 (35%), Gaps = 47/197 (23%)

Query: 362 VNQISFGVGRGECFGLLGLNGAGKTTTF---KM-LTGAIKPTSGNAYVMNHSIRDSMDLV 417
            ++I F         ++G NGAGKTT     K  LTG + P S         IR+    V
Sbjct: 15  RSEIEF---FSPLTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGE--V 69

Query: 418 RSYIGYCPQFDALNDRLTPREHLEFYSR------VRNVPSVLLNTIV--NESLNKFALGH 469
           R+ +                  L F +       +    ++L N I       N   L  
Sbjct: 70  RAQV-----------------KLAFENANGKKYTITRSLAILENVIFCHQGESNWPLL-- 110

Query: 470 YSDREVRTLSGGNKRKLSTAIALL------GNPPLIFLDEPTSGMDPGARRF-LWTCIE- 521
                    SGG K   S  I L        N  ++ LDEPT+ +D       L   IE 
Sbjct: 111 ---DMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEE 167

Query: 522 RAVSEGRCVILTSHNME 538
           R   +   +I+ +H+ E
Sbjct: 168 RKSQKNFQLIVITHDEE 184

The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. Length = 204

>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor

 Score = 51.4 bits (123), Expect = 1e-07
 Identities = 40/170 (23%), Positives = 58/170 (34%), Gaps = 60/170 (35%)

Query: 369 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFD 428
           V  GE  G++G NG GKTT  K+L G + P   N         D  D +     Y PQ+ 
Sbjct: 22  VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDN---------DEWDGIT--PVYKPQY- 69

Query: 429 ALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLST 488
                                                            LSGG  ++++ 
Sbjct: 70  -----------------------------------------------IDLSGGELQRVAI 82

Query: 489 AIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEG-RCVILTSHNM 537
           A ALL N      DEP++ +D   R      I R   EG +  ++  H++
Sbjct: 83  AAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDL 132

The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177

>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 23/100 (23%), Positives = 44/100 (44%), Gaps = 9/100 (9%)

Query: 73  ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARR----- 127
            +L +  L   + +    LSGG +++++ A AL   P LI  DEP + +DP   +     
Sbjct: 128 SALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDY 187

Query: 128 FLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 167
                 E    +G  VI+  H ++  +    ++  +  G+
Sbjct: 188 LKRINKE----DGITVIINLHQVDLAKKYADRIVGLKAGE 223

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243

>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 53.0 bits (128), Expect = 2e-07
 Identities = 22/78 (28%), Positives = 43/78 (55%), Gaps = 1/78 (1%)

Query: 91  LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHN 149
           LSGG ++++  A+AL  NP L+  DEPT+ +D   +  +   ++    E G  +IL +H+
Sbjct: 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHD 213

Query: 150 MEECEALCTKLTIMVNGQ 167
           +     +  ++ +M  G+
Sbjct: 214 LGVVAEIADRVAVMYAGR 231

Length = 316

>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional

 Score = 53.6 bits (129), Expect = 2e-07
 Identities = 26/88 (29%), Positives = 45/88 (51%)

Query: 85  DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVI 144
           D +V  LS  +K+ L  A  L+ +  +I +DEPTS +      +L+  + +   EG  ++
Sbjct: 140 DEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIV 199

Query: 145 LTSHNMEECEALCTKLTIMVNGQFTCLG 172
             SH + E   +C + T+M +G   C G
Sbjct: 200 YISHKLAEIRRICDRYTVMKDGSSVCSG 227

Length = 510

>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional

 Score = 52.2 bits (125), Expect = 2e-07
 Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 3/104 (2%)

Query: 70  IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFL 129
           IV  +L +  +  +  R++  LSGG K+++  A A+     +I LDEP +G+D      +
Sbjct: 122 IVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARI 181

Query: 130 WTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 173
            + +     EG+ +++++HN+      C   T+MV G  T L S
Sbjct: 182 ISLLRELRDEGKTMLVSTHNLGSVTEFC-DYTVMVKG--TVLAS 222

Length = 272

>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 15/112 (13%)

Query: 40  FDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKL 99
           F  +N  L   E               +   V E+L    +  + D+    LS G K+++
Sbjct: 103 FGPVNMGLDKDE---------------VERRVEEALKAVRMWDFRDKPPYHLSYGQKKRV 147

Query: 100 STAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 151
           + A  L  +P +I LDEP + +DP  +  L   ++R  ++G+ VI+ +H+++
Sbjct: 148 AIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD 199

Length = 274

>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 22/118 (18%)

Query: 70  IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIAL------LGNPPLIFLDEPTSGMDP 123
           I  ++L    L   + R+ RTLSGG ++++  A  L      + +   +FLDEPTS +D 
Sbjct: 115 IAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDI 174

Query: 124 G--------ARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 173
                    AR+      E         +L  H++        ++ ++  G+    GS
Sbjct: 175 AHQHHTLRLARQL---AREGG---AVLAVL--HDLNLAAQYADRIVLLHQGRVIASGS 224

Length = 259

>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 35/136 (25%), Positives = 65/136 (47%), Gaps = 6/136 (4%)

Query: 71  VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW 130
           V+++L +  +  + +RE   LSGG K++++ A  L   P +I LDE TS +DP  RR + 
Sbjct: 121 VDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVL 180

Query: 131 TCIERAVSEGR-CVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKSMALPVSGN 189
             + +   +    V+  +H+++E  A   ++ +M  G+    G+   +      L   G 
Sbjct: 181 ETVRQLKEQKGITVLSITHDLDEA-AQADRVIVMNKGEILEEGTPEEIFKSGHMLQEIGL 239

Query: 190 DLGRGDPVRSELSRAL 205
           D+    P   +L   L
Sbjct: 240 DV----PFSVKLKELL 251

Length = 279

>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional

 Score = 53.8 bits (130), Expect = 2e-07
 Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 13/123 (10%)

Query: 85  DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVI 144
           D  ++ LS G ++ +  A AL  N  +I  DEPTS +       L+  I    +EGR ++
Sbjct: 135 DTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVIL 194

Query: 145 LTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKSMALPVSGNDLGRGDPVRSELSRA 204
             SH MEE  ALC  +T+  +G++     AT      MA       + R   V++ + R 
Sbjct: 195 YVSHRMEEIFALCDAITVFKDGRYV----ATF---DDMA------QVDRDQLVQAMVGRE 241

Query: 205 LND 207
           + D
Sbjct: 242 IGD 244

Length = 501

>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional

 Score = 52.7 bits (126), Expect = 2e-07
 Identities = 28/106 (26%), Positives = 56/106 (52%), Gaps = 1/106 (0%)

Query: 73  ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDP-GARRFLWT 131
           ++L +  + H++ + V TLSGG +++++ A AL+    +I  DEP + +DP  AR  + T
Sbjct: 135 QALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDT 194

Query: 132 CIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 177
             +   ++G  V++T H ++     C ++  +  G     GS+   
Sbjct: 195 LRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQF 240

Length = 262

>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 52.8 bits (126), Expect = 2e-07
 Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 7/102 (6%)

Query: 91  LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 150
           LSGG  R+++ A  L   P ++ LDEPT+G+DP AR  +    E     G+ V+L +H M
Sbjct: 145 LSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLM 204

Query: 151 EECEALCTKLTIMVNGQFTCLGSATH-------LKSKSMALP 185
           ++       + ++  G     G+ +        LK+  + +P
Sbjct: 205 DDVADYADYVYLLEKGHIISCGTPSDVFQEVDFLKAHELGVP 246

Length = 288

>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

 Score = 51.7 bits (125), Expect = 2e-07
 Identities = 27/103 (26%), Positives = 47/103 (45%)

Query: 75  LNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIE 134
           L K  L   +D     LSGG +++++ A AL  +P ++  DEPTS +DP     +   ++
Sbjct: 121 LEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMK 180

Query: 135 RAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 177
               EG  +I+ +H M     +  ++  M  G+    G     
Sbjct: 181 DLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEF 223

Length = 240

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score = 53.6 bits (129), Expect = 2e-07
 Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 8/123 (6%)

Query: 34  IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLL---NTIVNESLNKFALGHYSDREVRT 90
           IGY  Q D      T RE L F + +R   SV        V E +    +  Y+D  V  
Sbjct: 838 IGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGV 897

Query: 91  ----LSGGNKRKLSTAIALLGNPP-LIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL 145
               L+   +++L+  + L+  P  L+FLDEPTSG+D      +   + +    G+ ++ 
Sbjct: 898 PGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILC 957

Query: 146 TSH 148
           T H
Sbjct: 958 TIH 960

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 52.3 bits (125), Expect = 2e-07
 Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 5/105 (4%)

Query: 67  LNTIVNESLNKFALGHYS----DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 122
           L+ IV +SL K AL +      +    +LSGG +++L  A  L   P +I +DEPTS +D
Sbjct: 123 LDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALD 182

Query: 123 PGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 167
           P +   +   I   + E   +I+ +HNM++   +  +    +NG 
Sbjct: 183 PISTGKIEELIIN-LKESYTIIIVTHNMQQAGRISDRTAFFLNGC 226

Length = 254

>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 52.3 bits (125), Expect = 2e-07
 Identities = 58/234 (24%), Positives = 95/234 (40%), Gaps = 40/234 (17%)

Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDL 416
           G K AV  ++  V RG    L+G +G GKTT  + +      T G A V    + D  D+
Sbjct: 15  GDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPG-ARVTGRILLDGQDI 73

Query: 417 VRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVP--SVLLNTIVNESL----NKFALGHY 470
                 Y P+ D +  R   R     + +    P  SV  N +    L    ++  L   
Sbjct: 74  ------YGPRVDPVAMR---RRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEV 124

Query: 471 SDREVRT-----------------LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR 513
           ++R +R                  LSGG +++L  A AL   P ++ +DEPTS +DP + 
Sbjct: 125 AERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPAST 184

Query: 514 ---RFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
                L T +++  +    +I+ +HNM +   +    +  + G     G    L
Sbjct: 185 ARIEDLMTDLKKVTT----IIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQL 234

Length = 252

>gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 6/85 (7%)

Query: 67  LNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPP--LIFLDEPTSGMDPG 124
           L  +++  L    LG    +++ TLSGG  +++  A  L   PP  L  LDEP++G+   
Sbjct: 68  LQFLIDVGLGYLTLG----QKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQ 123

Query: 125 ARRFLWTCIERAVSEGRCVILTSHN 149
               L   I+  +  G  VIL  HN
Sbjct: 124 DINQLLEVIKGLIDLGNTVILIEHN 148

Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176

>gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 6/85 (7%)

Query: 454 LNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPP--LIFLDEPTSGMDPG 511
           L  +++  L    LG    +++ TLSGG  +++  A  L   PP  L  LDEP++G+   
Sbjct: 68  LQFLIDVGLGYLTLG----QKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQ 123

Query: 512 ARRFLWTCIERAVSEGRCVILTSHN 536
               L   I+  +  G  VIL  HN
Sbjct: 124 DINQLLEVIKGLIDLGNTVILIEHN 148

Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176

>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system

 Score = 51.0 bits (123), Expect = 3e-07
 Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 8/130 (6%)

Query: 42  ALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFA-LGHYSDREVRTLSGGNKRKLS 100
             N  LT RE++    R+  +    ++  ++E +  F+ LG + D  V+T S G K +L+
Sbjct: 94  GFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIE-FSELGDFIDLPVKTYSSGMKARLA 152

Query: 101 TAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER---AVSEGRCVILTSHNMEECEALC 157
            AIA    P ++ +DE  +  D     F   C  R    + +G+ VIL SH+    + LC
Sbjct: 153 FAIATALEPDILLIDEVLAVGD---AAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLC 209

Query: 158 TKLTIMVNGQ 167
            +  ++  G+
Sbjct: 210 DRALVLEKGK 219

The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224

>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE

 Score = 51.1 bits (123), Expect = 3e-07
 Identities = 27/94 (28%), Positives = 48/94 (51%)

Query: 58  RVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEP 117
            VR      +   V  +L +  L H +D     LSGG +++++ A A++ +PPL+  DEP
Sbjct: 105 EVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEP 164

Query: 118 TSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 151
           T  +DP     +   ++R    G  VI+ +H++ 
Sbjct: 165 TGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS 198

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214

>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 52.1 bits (125), Expect = 3e-07
 Identities = 23/77 (29%), Positives = 42/77 (54%)

Query: 91  LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 150
           LSGG  R+++ A  +   P ++ LDEP +G+DP  R+ +    +     G  VIL +HNM
Sbjct: 146 LSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNM 205

Query: 151 EECEALCTKLTIMVNGQ 167
           ++       + ++ +G+
Sbjct: 206 DDVAEYADDVLVLEHGK 222

Length = 287

>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 51.4 bits (123), Expect = 3e-07
 Identities = 32/90 (35%), Positives = 52/90 (57%), Gaps = 5/90 (5%)

Query: 67  LNTIVNESLNKFAL-GHYSDR---EVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 122
           L  IV +SL   AL     DR   +  +LSGG +++L  A AL  NP ++ +DEPTS +D
Sbjct: 128 LQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALD 187

Query: 123 PGARRFLWTCIERAVSEGRCVILTSHNMEE 152
           P + R +   I + + E   +++ +HNM++
Sbjct: 188 PVSTRKIEELILK-LKEKYTIVIVTHNMQQ 216

Length = 259

>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 43/191 (22%), Positives = 75/191 (39%), Gaps = 13/191 (6%)

Query: 359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG--AIKPTSGNAYVMNHSIRDSMDL 416
           K  +  ++  V +GE   ++G NG+GK+T  K + G  + + TSG        + +    
Sbjct: 13  KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPD 72

Query: 417 VRSYIG------YCPQFDALNDRLTPREHLEFYSRVRNVPSVLL---NTIVNESLNKFAL 467
            R+  G      Y  +   +++    R  L      R    + L     ++   L    +
Sbjct: 73  ERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGM 132

Query: 468 -GHYSDREVRT-LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS 525
              + +R V    SGG K++       L  P L  LDE  SG+D  A + +   I R   
Sbjct: 133 DEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE 192

Query: 526 EGRCVILTSHN 536
             R  ++ +H 
Sbjct: 193 PDRSFLIITHY 203

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243

>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter

 Score = 53.0 bits (127), Expect = 3e-07
 Identities = 52/235 (22%), Positives = 92/235 (39%), Gaps = 20/235 (8%)

Query: 309 FTRSNLHPVPVSLEEDDVRKERERVEHGADSGDVLVVKRLFKIYANSKGTKP-AVNQISF 367
              +   P     + D+V            S D + +K +       +G++  A+  I  
Sbjct: 309 ERFNEPEPELELSDADNVLLLAHD-----KSVDSIELKDVHMNPKAPEGSEGFALGPIDL 363

Query: 368 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN-----AYVMNHSIRDSMDLVRSYIG 422
            + +G+   ++G NG GK+T  K+  G   P  G      A V   S  D  DL  +   
Sbjct: 364 RIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFA 423

Query: 423 YCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGN 482
               F   +D + P E     + + N     L  +      K   G +S      LS G 
Sbjct: 424 ---DFHLFDDLIGPDEGEH--ASLDNA-QQYLQRLEIADKVKIEDGGFS--TTTALSTGQ 475

Query: 483 KRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT-CIERAVSEGRCVILTSHN 536
           +++L+   A L + P++  DE  +  DP  +RF +   +     +G+ +I+ SH+
Sbjct: 476 QKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHD 530

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555

>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed

 Score = 52.8 bits (128), Expect = 3e-07
 Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 11/59 (18%)

Query: 366 SFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN---------AYVMNHSIRDSMD 415
           SF +  G   G++G NGAGK+T FKM+TG  +P SG          AYV     RD++D
Sbjct: 344 SFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQS--RDALD 400

Length = 556

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score = 52.5 bits (127), Expect = 4e-07
 Identities = 26/82 (31%), Positives = 44/82 (53%)

Query: 88  VRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTS 147
            R+LSGGN++KL  A  L   P L+   +PT G+D GA  F+   +      G+ V+L S
Sbjct: 401 ARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLIS 460

Query: 148 HNMEECEALCTKLTIMVNGQFT 169
            +++E   L  ++ ++  G+  
Sbjct: 461 EDLDEILELSDRIAVIYEGRIV 482

Length = 501

>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit

 Score = 52.3 bits (126), Expect = 4e-07
 Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 1/58 (1%)

Query: 91  LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 148
           LSGG  ++L+ A A L + PL+ LDEPT+ +D      +     RA+++GR V+L +H
Sbjct: 459 LSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEV-LEALRALAQGRTVLLVTH 515

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529

>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 52.0 bits (124), Expect = 4e-07
 Identities = 57/219 (26%), Positives = 97/219 (44%), Gaps = 35/219 (15%)

Query: 358 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFK---MLTGAIKPTS--GNAYVMNHSIRD 412
           TK  ++ ++  + R +    +G +G GK+T  +    L   I+ TS  G  Y +  + R 
Sbjct: 94  TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRS 153

Query: 413 ----SMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPS-------VLLNTIVNES 461
               S++L R+ IG   Q      + TP E +  +  V   P         +L  IV +S
Sbjct: 154 KKISSLEL-RTRIGMVFQ------KPTPFE-MSIFDNVAYGPRNNGINDRKILEKIVEKS 205

Query: 462 LNKFALGHYS----DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW 517
           L   AL        D+    LSGG +++L  A A+   P ++ +DEPTS +DP A     
Sbjct: 206 LKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIAT---- 261

Query: 518 TCIERAVSEGR---CVILTSHNMEECEALCTKLTIMVNG 553
             IE  + E +    +I+ +H+M + + +  +      G
Sbjct: 262 AKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQG 300

Length = 329

>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2

 Score = 52.1 bits (125), Expect = 5e-07
 Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 1/89 (1%)

Query: 85  DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCV 143
           D+    LS G + +++ A  L+  P ++ LDEPT  MDP  +  +   I +A  E  +  
Sbjct: 422 DKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTF 481

Query: 144 ILTSHNMEECEALCTKLTIMVNGQFTCLG 172
           I+ SH+M+    +C +  +M +G+   +G
Sbjct: 482 IIVSHDMDFVLDVCDRAALMRDGKIVKIG 510

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520

>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional

 Score = 50.9 bits (122), Expect = 5e-07
 Identities = 37/128 (28%), Positives = 66/128 (51%), Gaps = 5/128 (3%)

Query: 44  NDRLTP----REHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKL 99
           N+ L P    ++++ F  ++  V  +    I ++ L K  L     R +  LSGG ++++
Sbjct: 78  NEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRV 137

Query: 100 STAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCT 158
             A AL  NP L+ LDEP   +D   R  + T + +   E G+ V+L +H++EE   + T
Sbjct: 138 GIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMAT 197

Query: 159 KLTIMVNG 166
           +L ++  G
Sbjct: 198 ELVLLSPG 205

Length = 255

>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK

 Score = 51.0 bits (122), Expect = 5e-07
 Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 1/84 (1%)

Query: 85  DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCV 143
           D   R  SGG +++L  A  L+  P L+F+DEPT G+D   +  L   +   V + G  V
Sbjct: 143 DDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAV 202

Query: 144 ILTSHNMEECEALCTKLTIMVNGQ 167
           I+ +H++     L  +L +M  G+
Sbjct: 203 IIVTHDLGVARLLAQRLLVMQQGR 226

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253

>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed

 Score = 50.9 bits (122), Expect = 5e-07
 Identities = 35/133 (26%), Positives = 56/133 (42%), Gaps = 8/133 (6%)

Query: 38  PQFDAL-NDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNK 96
           P   AL N    P        RVR            E L K  L   +      LSGG +
Sbjct: 90  PHLTALENVMFGPL-------RVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQ 142

Query: 97  RKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEAL 156
           ++++ A AL   P L+  DEPTS +DP  R  +   ++    EG  +++ +H +   E +
Sbjct: 143 QRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKV 202

Query: 157 CTKLTIMVNGQFT 169
            ++L  +  G+  
Sbjct: 203 ASRLIFIDKGRIA 215

Length = 240

>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

 Score = 51.9 bits (125), Expect = 5e-07
 Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 7/84 (8%)

Query: 71  VNESLNKFALGHYSDR--EV----RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPG 124
           +   L+K  LG  ++R  E     R LSGG +++L+ A  LL  P  +FLDE TS +D  
Sbjct: 490 LVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEE 549

Query: 125 ARRFLWTCIERAVSEGRCVILTSH 148
               L+  ++  +     VI   H
Sbjct: 550 TEDRLYQLLKEEL-PDATVISVGH 572

Length = 604

>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family

 Score = 52.4 bits (126), Expect = 5e-07
 Identities = 58/225 (25%), Positives = 96/225 (42%), Gaps = 53/225 (23%)

Query: 358 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDL- 416
           +   ++ ++  +  GE  G++G +G+GK+T  K+L     P  G   V      D +DL 
Sbjct: 469 SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLV------DGVDLA 522

Query: 417 ------VRSYIGYCPQFDAL-------NDRLT----PREH----------LEFYSRVRNV 449
                 +R  +G   Q + L       N  L     P EH           +F S +   
Sbjct: 523 IADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQG 582

Query: 450 PSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 509
                NT V E   K A           LSGG +++++ A AL+GNP ++  DE TS +D
Sbjct: 583 ----YNTEVGE---KGAN----------LSGGQRQRIAIARALVGNPRILIFDEATSALD 625

Query: 510 PGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 554
             +   +   + R +  GR VI+ +H +    A C ++ ++  GQ
Sbjct: 626 YESEALIMRNM-REICRGRTVIIIAHRLSTVRA-CDRIIVLEKGQ 668

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694

>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed

 Score = 52.3 bits (126), Expect = 5e-07
 Identities = 46/166 (27%), Positives = 66/166 (39%), Gaps = 36/166 (21%)

Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDL 416
             K  V   S  V RG+   L+G NG GKTT  K++ G ++  SG        I     L
Sbjct: 330 DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSG-------RIHCGTKL 382

Query: 417 VRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVP----SVLLNTIVNESLNKFALGHYSD 472
             +Y      FD     L P + +       N+      V++N        +  LG+  D
Sbjct: 383 EVAY------FDQHRAELDPEKTVM-----DNLAEGKQEVMVNGR-----PRHVLGYLQD 426

Query: 473 ---------REVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 509
                      V+ LSGG + +L  A   L    L+ LDEPT+ +D
Sbjct: 427 FLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLD 472

Length = 635

>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 50.8 bits (121), Expect = 5e-07
 Identities = 48/199 (24%), Positives = 91/199 (45%), Gaps = 24/199 (12%)

Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTT---TFKMLTGAIKPTSGNAYVMNHSIRDS 413
           G K A+  I+  + + +   L+G +G GK+T    F  +   I    G   +    +++ 
Sbjct: 13  GKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQ 72

Query: 414 MDLV--RSYIGYCPQ-----FDALNDRLT--PREHLEFYSRVRNVPSVLLNTIVNESLNK 464
            D+V  R  +G   Q       ++ + ++  P+ H      ++N        +V + L K
Sbjct: 73  -DVVALRKNVGMVFQQPNVFVKSIYENISYAPKLH----GMIKNKDEE--EALVVDCLQK 125

Query: 465 FALGHYSDREVR----TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCI 520
             L      +++     LSGG +++L  A AL   P L+ LDEPTS +DP +   +   +
Sbjct: 126 VGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELL 185

Query: 521 ERAVSEGRCVILTSHNMEE 539
            + +S    +I+ +HNM++
Sbjct: 186 -KELSHNLSMIMVTHNMQQ 203

Length = 246

>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C

 Score = 49.8 bits (120), Expect = 6e-07
 Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 2/79 (2%)

Query: 90  TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT-CIERAVSEGRCVILTSH 148
            LSGG K+++S A A+  +  +  LD+P S +D    R ++  CI   +   +  IL +H
Sbjct: 127 NLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTH 186

Query: 149 NMEECEALCTKLTIMVNGQ 167
            ++       ++ ++ NG+
Sbjct: 187 QLQLLPH-ADQIVVLDNGR 204

This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204

>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 50.7 bits (121), Expect = 6e-07
 Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 15/111 (13%)

Query: 66  LLNTIVNESLNKFAL-GHYSDR---EVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGM 121
           +L+ IV ESL K AL     DR      +LSGG +++L  A  L   P ++ LDEP S +
Sbjct: 136 VLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASAL 195

Query: 122 DP--GARRFLWTCIERAVSEGR---CVILTSHNMEECEALCTKLTIMVNGQ 167
           DP   A+      IE  ++E +    +I+ +HNM++   +  +    +NG 
Sbjct: 196 DPISNAK------IEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGD 240

Length = 268

>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 50.9 bits (122), Expect = 6e-07
 Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 7/102 (6%)

Query: 91  LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 150
           LSGG  R+++ A  L   P ++ LDEPT+G+DP  R+ L T  ++    G  ++L +H M
Sbjct: 146 LSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLM 205

Query: 151 EECEALCTKLTIMVNGQFTCLGSATH-------LKSKSMALP 185
           ++       + ++  G+    G           L+ K + +P
Sbjct: 206 DDVANYADFVYVLEKGKLVLSGKPKDIFQDVDFLEEKQLGVP 247

Length = 280

>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional

 Score = 51.9 bits (125), Expect = 6e-07
 Identities = 47/188 (25%), Positives = 77/188 (40%), Gaps = 30/188 (15%)

Query: 361 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI-RDSMDLVRS 419
           +V  I+  + RGE   L+G NG+GK+T   +LTG  +P SG   +    +  +  +  R 
Sbjct: 338 SVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRK 397

Query: 420 YIGYCPQFDA------LNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGH---Y 470
                  F A      L D+L   E                  +V + L +  + H    
Sbjct: 398 ------LFSAVFTDFHLFDQLLGPEGKP-----------ANPALVEKWLERLKMAHKLEL 440

Query: 471 SDREVRT--LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-G 527
            D  +    LS G K++L+  +AL     ++ LDE  +  DP  RR  +  +   + E G
Sbjct: 441 EDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMG 500

Query: 528 RCVILTSH 535
           + +   SH
Sbjct: 501 KTIFAISH 508

Length = 547

>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2

 Score = 51.7 bits (124), Expect = 7e-07
 Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 1/104 (0%)

Query: 80  LGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAV-S 138
           L H      R LSGG K+++  A  L   P L   DEPT  +DP   + +   +E AV +
Sbjct: 158 LSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKA 217

Query: 139 EGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKSM 182
            G  ++LTSH  E  E L  K   + NG+    G+   + +  M
Sbjct: 218 SGISMVLTSHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAVFM 261

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520

>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 50.2 bits (120), Expect = 7e-07
 Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 4/113 (3%)

Query: 34  IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYS-DREVRTLS 92
           + YC Q  AL    T  ++L F  ++RN           + L +FAL      + +  LS
Sbjct: 79  VSYCAQTPALFGD-TVEDNLIFPWQIRN--RRPDRAAALDLLARFALPDSILTKNITELS 135

Query: 93  GGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL 145
           GG K++++    L   P ++ LDE TS +D   +R +   I R V E    +L
Sbjct: 136 GGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVL 188

Length = 223

>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional

 Score = 51.6 bits (123), Expect = 7e-07
 Identities = 31/133 (23%), Positives = 64/133 (48%), Gaps = 1/133 (0%)

Query: 42  ALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLST 101
           AL   +T  ++  F   +  + +        ++L +  L +Y+      LSGG ++++  
Sbjct: 116 ALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGL 175

Query: 102 AIALLGNPPLIFLDEPTSGMDPGARRFLW-TCIERAVSEGRCVILTSHNMEECEALCTKL 160
           A AL  NP ++ +DE  S +DP  R  +    ++      R ++  SH+++E   +  ++
Sbjct: 176 ARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRI 235

Query: 161 TIMVNGQFTCLGS 173
            IM NG+   +G+
Sbjct: 236 AIMQNGEVVQVGT 248

Length = 400

>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional

 Score = 50.3 bits (120), Expect = 7e-07
 Identities = 46/186 (24%), Positives = 85/186 (45%), Gaps = 6/186 (3%)

Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI----RD 412
           G + A+  ++F +  GE   L G +GAGK+T  K++ G  +P++G  +   H I      
Sbjct: 13  GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNR 72

Query: 413 SMDLVRSYIGYCPQ-FDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYS 471
            +  +R  IG   Q    L DR T  +++     +       +   V+ +L+K  L   +
Sbjct: 73  EVPFLRRQIGMIFQDHHLLMDR-TVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKA 131

Query: 472 DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVI 531
                 LSGG ++++  A A++  P ++  DEPT  +D      +    E     G  V+
Sbjct: 132 KNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVL 191

Query: 532 LTSHNM 537
           + +H++
Sbjct: 192 MATHDI 197

Length = 222

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 51.4 bits (124), Expect = 8e-07
 Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 3/138 (2%)

Query: 33  YIGYCPQFDALNDRLTPREHLEFYSRVRNVPS-VLLNTIVNESLNKFALGH-YSDREVRT 90
            + +   + +LN R+T  + L    R+    S       V E L    L   + DR    
Sbjct: 370 QMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHE 429

Query: 91  LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHN 149
           LSGG +++++ A AL   P L+ LDEP S +D   +  +   ++    E G   +  SH+
Sbjct: 430 LSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHD 489

Query: 150 MEECEALCTKLTIMVNGQ 167
           +     +  ++ +M +G+
Sbjct: 490 LAVVRYIADRVAVMYDGR 507

Length = 539

>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional

 Score = 51.6 bits (124), Expect = 8e-07
 Identities = 58/246 (23%), Positives = 106/246 (43%), Gaps = 67/246 (27%)

Query: 322 EEDDVRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLN 381
           E+D+ ++  ER +     GD+   + +   Y   +   PA+  I+F +  G+   L+G +
Sbjct: 327 EKDEGKRVIERAK-----GDI-EFRNVTFTYPGKE--VPALRNINFKIPAGKTVALVGRS 378

Query: 382 GAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM-------------------DLVRSYIG 422
           G+GK+T   +LT       G   +  H +RD                     D + + I 
Sbjct: 379 GSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIA 438

Query: 423 YCPQFDALNDRLTPREHLE----------FYSRVRNVPSVLLNTIVNESLNKFALGHYSD 472
           Y     A  ++ + RE +E          F +++ N     L+T++ E+      G    
Sbjct: 439 Y-----ARTEQYS-REQIEEAARMAYAMDFINKMDNG----LDTVIGEN------G---- 478

Query: 473 REVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE---GRC 529
                LSGG +++++ A ALL + P++ LDE TS +D  + R     I+ A+ E    R 
Sbjct: 479 ---VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESER----AIQAALDELQKNRT 531

Query: 530 VILTSH 535
            ++ +H
Sbjct: 532 SLVIAH 537

Length = 582

>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 49.4 bits (118), Expect = 9e-07
 Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 1/86 (1%)

Query: 71  VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR-RFL 129
            N +L +  L     ++  TLSGG + +++   ALL  P  + LDEP S +D   R +F 
Sbjct: 115 ANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFR 174

Query: 130 WTCIERAVSEGRCVILTSHNMEECEA 155
                   + G   +  +H++++  A
Sbjct: 175 QWVFSEVRAAGIPTVQVTHDLQDVPA 200

Length = 213

>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional

 Score = 50.7 bits (122), Expect = 9e-07
 Identities = 51/191 (26%), Positives = 84/191 (43%), Gaps = 32/191 (16%)

Query: 342 VLVVKRLFKIYANSKG------TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA 395
           +L    L K Y   +G         A++ +SF + RG+   ++G +G GK+T  ++LT  
Sbjct: 5   LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMI 64

Query: 396 IKPTSGNAYVMNHSI----RDSMDLVRSYIGYCPQ--FDALNDRLTPREHLEFYSRVRNV 449
             PT G  Y     +     ++  L+R  I    Q  + +LN R    + LE        
Sbjct: 65  ETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILE-------- 116

Query: 450 PSVLLNTI---------VNESLNKFALG--HYSDREVRTLSGGNKRKLSTAIALLGNPPL 498
             +L+NT              + K  L   HY DR     SGG +++++ A AL+ +P +
Sbjct: 117 EPLLINTSLSAAERREKALAMMAKVGLRPEHY-DRYPHMFSGGQRQRIAIARALMLDPDV 175

Query: 499 IFLDEPTSGMD 509
           +  DEP S +D
Sbjct: 176 VVADEPVSALD 186

Length = 327

>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 50.7 bits (122), Expect = 1e-06
 Identities = 29/98 (29%), Positives = 54/98 (55%), Gaps = 1/98 (1%)

Query: 71  VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW 130
           V E+L    L  ++DR+   LSGG +++++ A AL+  P ++ LDEP S +D   R  + 
Sbjct: 117 VEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMR 176

Query: 131 TCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQ 167
             ++    E G   +  +H+ EE  A+  ++ +M +G+
Sbjct: 177 KELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGR 214

Length = 352

>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

 Score = 51.1 bits (123), Expect = 1e-06
 Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 15/66 (22%)

Query: 91  LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-------GRCV 143
           LSGG +++L+ A ALL  P ++ LDE TS +DP          E  + +       GR V
Sbjct: 610 LSGGQRQRLALARALLSKPKILLLDEATSALDPE--------TEAIILQNLLQILQGRTV 661

Query: 144 ILTSHN 149
           I+ +H 
Sbjct: 662 IIIAHR 667

Length = 709

>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional

 Score = 50.2 bits (120), Expect = 1e-06
 Identities = 34/133 (25%), Positives = 65/133 (48%), Gaps = 1/133 (0%)

Query: 42  ALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLST 101
           AL   +T  +++ F  +   +P   + + VNE L    +  ++ R+   LSGG +++++ 
Sbjct: 101 ALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVAL 160

Query: 102 AIALLGNPPLIFLDEPTSGMDPGAR-RFLWTCIERAVSEGRCVILTSHNMEECEALCTKL 160
           A +L   P L+ LDEP   +D   R R     ++     G   ++ +H+ EE   +  ++
Sbjct: 161 ARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRI 220

Query: 161 TIMVNGQFTCLGS 173
            IM  G+F  +G 
Sbjct: 221 AIMNRGKFVQIGE 233

Length = 377

>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional

 Score = 49.8 bits (120), Expect = 1e-06
 Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 21/120 (17%)

Query: 70  IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALL------GNPPLIFLDEPTSGMDP 123
           +V  +L +  L H + R+   LSGG ++++  A  L       G P  + LDEPTS +D 
Sbjct: 114 LVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDL 173

Query: 124 G--------ARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSAT 175
                    AR+      ER +     V+L  H++        ++ ++  G+    G+  
Sbjct: 174 AHQHHVLRLARQL---AHERGL--AVIVVL--HDLNLAARYADRIVLLHQGRLVADGTPA 226

Length = 258

>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 27/104 (25%), Positives = 55/104 (52%)

Query: 70  IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFL 129
            VN+++ +  + H +DR +  LSGG +++   A+ L  + P++ LDEPT+ +D   +  L
Sbjct: 118 RVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVEL 177

Query: 130 WTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 173
              +    ++G+ V+   H++ +    C  L ++ NG     G+
Sbjct: 178 MRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGT 221

Length = 255

>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional

 Score = 49.9 bits (120), Expect = 1e-06
 Identities = 44/182 (24%), Positives = 72/182 (39%), Gaps = 16/182 (8%)

Query: 365 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD----SMDLVRSY 420
           +S  V  GE   L+G NGAGK+T    + G + P SG+       +       +   R+Y
Sbjct: 15  LSAEVRAGEILHLVGPNGAGKSTLLARMAG-LLPGSGSIQFAGQPLEAWSAAELARHRAY 73

Query: 421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSG 480
           +    Q         P        +     +  + + +NE      L     R V  LSG
Sbjct: 74  L--SQQQTPPF--AMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSG 129

Query: 481 GNKRKLSTAIALL-----GNP--PLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILT 533
           G  +++  A  +L      NP   L+ LDEP + +D   +  L   +     +G  V+++
Sbjct: 130 GEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMS 189

Query: 534 SH 535
           SH
Sbjct: 190 SH 191

Length = 248

>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 51/204 (25%), Positives = 89/204 (43%), Gaps = 31/204 (15%)

Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT---GAIKPTSGNAYVMNHSI--- 410
           G K A+  I     + +   L+G +G+GK+T  + L      I        ++   I   
Sbjct: 31  GKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDIN 90

Query: 411 RDSMDL--VRSYIGYCPQFDALNDRLTP-----REHLEFYSRVRNVP-SVLLNTIVNESL 462
           R  +++  +R +IG   Q      R  P      E++ F      V    +L+ IV  SL
Sbjct: 91  RKEINVYEMRKHIGMVFQ------RPNPFAKSIYENITFALERAGVKDKKVLDEIVETSL 144

Query: 463 NKFALGHYS----DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT 518
            + AL         +   TLSGG +++L  A A+   P ++ +DEP S +DP +      
Sbjct: 145 KQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPIST----M 200

Query: 519 CIERAVSEGR---CVILTSHNMEE 539
            +E  + E +    +I+ +HNM++
Sbjct: 201 QLEETMFELKKNYTIIIVTHNMQQ 224

Length = 267

>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 50.2 bits (120), Expect = 1e-06
 Identities = 64/268 (23%), Positives = 105/268 (39%), Gaps = 57/268 (21%)

Query: 310 TRSNLHPVPVSLEEDDVRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGV 369
           +      V  +  E D +   E  ++  D    L V+ L   Y    G   A+  +S  +
Sbjct: 13  SDGTDPEVETTSGESDEQTRDEWTDYEFDGDAKLSVEDLDVYY----GDDHALKGVSMDI 68

Query: 370 GRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR-----------------D 412
                  L+G +G GK+T  + L             MN  I+                 D
Sbjct: 69  PEKSVTALIGPSGCGKSTFLRCLNR-----------MNDRIKAARIDGSVELDGQDIYQD 117

Query: 413 SMDLV--RSYIGYC-------PQFDALNDRLTPREHLEFYSRVRNVPSVLL--------N 455
            ++LV  R  +G         P+    N    PR+H +       + + LL        +
Sbjct: 118 GVNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDIN---TGLLARLLGRDDKDAED 174

Query: 456 TIVNESLNKFAL-GHYSDR---EVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPG 511
            +V  SL + AL    +DR       LSGG +++L  A  L  +P +I +DEP S +DP 
Sbjct: 175 ELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPI 234

Query: 512 ARRFLWTCIERAVSEGRCVILTSHNMEE 539
           A   +   IE  ++E   V++ +HNM++
Sbjct: 235 ATSKIEDLIEE-LAEEYTVVVVTHNMQQ 261

Length = 305

>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional

 Score = 50.0 bits (119), Expect = 1e-06
 Identities = 39/163 (23%), Positives = 72/163 (44%), Gaps = 15/163 (9%)

Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD--SM 414
           G       ++  +  G    ++G NG GK+T  + L+  + P  G+ ++    I+   S 
Sbjct: 18  GKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASK 77

Query: 415 DLVRSYIGYCPQFDALNDRLTPRE--------HLEFYSRVRNVPSVLLNTIVNESLNKFA 466
           ++ R  IG   Q       +T +E        H   ++R R          V +++    
Sbjct: 78  EVARR-IGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDE----EAVTKAMQATG 132

Query: 467 LGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 509
           + H +D+ V TLSGG +++   A+ L     ++ LDEPT+ +D
Sbjct: 133 ITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD 175

Length = 265

>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 49.6 bits (118), Expect = 1e-06
 Identities = 51/201 (25%), Positives = 85/201 (42%), Gaps = 26/201 (12%)

Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDL 416
           G K A+  +S  + +     L+G +G GK+T  + L         N  + N  I   + +
Sbjct: 23  GEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRM------NDLIKNCRIEGKVSI 76

Query: 417 VRSYIGYCPQFDALNDR--------------LTPREHLEFYSRVRNVPSVLLNTIVNESL 462
               I Y P  D +  R              ++  +++ +  R+       L+ +V  +L
Sbjct: 77  EGEDI-YEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENAL 135

Query: 463 NKFAL-GHYSDR---EVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT 518
              AL    SDR      +LSGG +++L  A  L   P +I  DEPTS +DP +   +  
Sbjct: 136 RSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIED 195

Query: 519 CIERAVSEGRCVILTSHNMEE 539
            I     +   VI+T HNM++
Sbjct: 196 LIMNLKKDYTIVIVT-HNMQQ 215

Length = 258

>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 4/87 (4%)

Query: 83  YSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC 142
           Y  R    LSGG KR+++ A  L   P  +  DEPT+G+DP   + +    +    +G+ 
Sbjct: 158 YLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKT 217

Query: 143 VILTSHNMEECEAL-CTKLTIMV-NGQ 167
           +IL +H+++    L  TK TI   +G+
Sbjct: 218 IILVTHDLD--NVLEWTKRTIFFKDGK 242

Length = 305

>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 4/87 (4%)

Query: 470 YSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC 529
           Y  R    LSGG KR+++ A  L   P  +  DEPT+G+DP   + +    +    +G+ 
Sbjct: 158 YLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKT 217

Query: 530 VILTSHNMEECEAL-CTKLTIMV-NGQ 554
           +IL +H+++    L  TK TI   +G+
Sbjct: 218 IILVTHDLD--NVLEWTKRTIFFKDGK 242

Length = 305

>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 35/136 (25%), Positives = 66/136 (48%), Gaps = 8/136 (5%)

Query: 42  ALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFA-LGHYSDREVRTLSGGNKRKLS 100
             +  LT RE++     +  +    ++  V+E + +FA LG + D+ V+T S G   +L+
Sbjct: 99  GFDPELTGRENIYLRGLILGLTRKEIDEKVDEII-EFAELGDFIDQPVKTYSSGMYARLA 157

Query: 101 TAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERA---VSEGRCVILTSHNMEECEALC 157
            ++A    P ++ LDE  +  D     F   C+ER    V + + ++L SH++   +  C
Sbjct: 158 FSVATHVEPDILLLDEVLAVGDA---AFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYC 214

Query: 158 TKLTIMVNGQFTCLGS 173
            +   + +GQ    GS
Sbjct: 215 DRAIWLEHGQIRMEGS 230

Length = 249

>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 37/133 (27%), Positives = 71/133 (53%), Gaps = 1/133 (0%)

Query: 42  ALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLST 101
           AL   LT  E++ F  R++ +P   +   V E+L+   L  Y++R+   LSGG +++++ 
Sbjct: 82  ALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAI 141

Query: 102 AIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKL 160
           A AL+  P ++ LDEP   +D   R+ +   ++R   E G   +  +H+ EE   +  ++
Sbjct: 142 ARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRI 201

Query: 161 TIMVNGQFTCLGS 173
            +M  G+   +G+
Sbjct: 202 AVMNKGKIQQIGT 214

PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232

>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

 Score = 50.0 bits (120), Expect = 2e-06
 Identities = 50/203 (24%), Positives = 90/203 (44%), Gaps = 30/203 (14%)

Query: 365 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI-RDSMDLVRSY-IG 422
           I F +  GE   LLG NGAGK+T  K++ G + P SG   +  +   R +        I 
Sbjct: 30  IDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIY 89

Query: 423 YCPQFDALNDRLTPREHLEF--------YSRVRNVPSVL---LNTIVNESLNKFALGHYS 471
             PQ   L   L+ +E++ F          +++ + + L   L+   +    + A     
Sbjct: 90  LVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVA----- 144

Query: 472 DRE-VRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCV 530
           DR+ V  L G           L+ +  ++ LDEPT+ + P     L++ I   +++G  +
Sbjct: 145 DRQIVEILRG-----------LMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGI 193

Query: 531 ILTSHNMEECEALCTKLTIMVNG 553
           +  SH + E   L  ++++M +G
Sbjct: 194 VFISHKLPEIRQLADRISVMRDG 216

Length = 510

>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family

 Score = 50.0 bits (120), Expect = 2e-06
 Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 1/91 (1%)

Query: 90  TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN 149
           TLSGG +++++ A AL G+P L+ LDEP S +D    + L   I+   + G  V++ +H 
Sbjct: 454 TLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHR 513

Query: 150 MEECEALCTKLTIMVNGQFTCLGSATHLKSK 180
                 +  K+ ++ +G+    G    + +K
Sbjct: 514 PSLLGCV-DKILVLQDGRIARFGERDEVLAK 543

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544

>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 23/64 (35%), Positives = 40/64 (62%), Gaps = 2/64 (3%)

Query: 85  DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVI 144
           +R V+ LSGG +++++ A ALL +PP++ LDE TS +D  + R +   +ER   + R   
Sbjct: 134 ERGVK-LSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERL-MKNRTTF 191

Query: 145 LTSH 148
           + +H
Sbjct: 192 VIAH 195

MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234

>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters

 Score = 48.3 bits (116), Expect = 2e-06
 Identities = 25/78 (32%), Positives = 41/78 (52%)

Query: 73  ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTC 132
           E L K  L   +D     LSGG +++++ A AL  NP ++  DEPTS +DP     +   
Sbjct: 118 ELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDV 177

Query: 133 IERAVSEGRCVILTSHNM 150
           ++    EG  +++ +H M
Sbjct: 178 MKDLAEEGMTMVVVTHEM 195

HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213

>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 49.0 bits (117), Expect = 2e-06
 Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 1/84 (1%)

Query: 85  DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCV 143
           D   RT SGG +++L  A  L+  P L+F+DEPT G+D   +  L   +   V E G  V
Sbjct: 146 DDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAV 205

Query: 144 ILTSHNMEECEALCTKLTIMVNGQ 167
           ++ +H++     L  +L +M  GQ
Sbjct: 206 VIVTHDLAVARLLADRLMVMKQGQ 229

Length = 258

>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 55/207 (26%), Positives = 89/207 (42%), Gaps = 36/207 (17%)

Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKML-----TGAIKPTSGNAYVMNHSIR 411
           G K A+  +   +        +G +G GK+T  + L     T      +G   +    I 
Sbjct: 30  GEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIY 89

Query: 412 D-SMDLV--RSYIGYCPQ---------FDALNDRLTPREHLEFYSRVRNVPSVLLNTIVN 459
           D  +D+V  R+ +G   Q         ++  N    PR H    S+        L+ IV 
Sbjct: 90  DPRLDVVELRARVGMVFQKPNPFPKSIYE--NVAYGPRIHGLARSKAE------LDEIVE 141

Query: 460 ESLNKFAL-GHYSDR--EVRT-LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRF 515
            SL K  L     DR  E  T LSGG +++L  A A+  +P +I +DEP S +DP A   
Sbjct: 142 TSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIAT-- 199

Query: 516 LWTCIERAVSEGR---CVILTSHNMEE 539
               +E  + E R    +++ +H+M++
Sbjct: 200 --AKVEELIDELRQNYTIVIVTHSMQQ 224

Length = 267

>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 47/199 (23%), Positives = 77/199 (38%), Gaps = 30/199 (15%)

Query: 362 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLT-------GAIKPTSGNAYVMN------- 407
           ++ ++F V  GE   L+G +G+GK+T  ++L        G I+      Y M        
Sbjct: 16  LDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLV 75

Query: 408 -------HSIRDSMDLVRSYIGYCPQFDAL-NDRLTPREHLEFYSRVRNVPSVLLNTIVN 459
                    +R+ + +V       P    L N    P         V  +          
Sbjct: 76  PADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAP-------VLVLGMARAEAEKRAM 128

Query: 460 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTC 519
           E L+   L   +D     LSGG +++++ A AL   P ++  DE TS +DP     +   
Sbjct: 129 ELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNV 188

Query: 520 IERAVSEGR-CVILTSHNM 537
           I R  SE    ++L +H M
Sbjct: 189 IRRLASEHDLTMLLVTHEM 207

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252

>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 49.2 bits (117), Expect = 2e-06
 Identities = 49/201 (24%), Positives = 89/201 (44%), Gaps = 25/201 (12%)

Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKML------------TGAIKPTSGNAY 404
           G K A+N I+  +   +   L+G +G GK+T  + L             G +     N Y
Sbjct: 15  GEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIY 74

Query: 405 VMNHSIRDSMDLVRSYIGYCPQFDALND-RLTPREHLEFYSRVRNVP-SVLLNTIVNESL 462
             +  + +    +R  +G    F   N   ++  +++ +  R+  +     L+ IV  +L
Sbjct: 75  DKDVDVVE----LRKRVGMV--FQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWAL 128

Query: 463 NKFALGHYSDREVR----TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT 518
            K AL      +++     LSGG +++L  A  +   P +I +DEPTS +DP +   +  
Sbjct: 129 KKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIED 188

Query: 519 CIERAVSEGRCVILTSHNMEE 539
            +     E   VI+T HNM++
Sbjct: 189 LMVELKKEYTIVIVT-HNMQQ 208

Length = 251

>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 48.9 bits (116), Expect = 2e-06
 Identities = 49/203 (24%), Positives = 81/203 (39%), Gaps = 28/203 (13%)

Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDL 416
           G   AV  +S          ++G +G GK+T  + +   +     +A V    + D  D+
Sbjct: 15  GKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSIN-RMHDLVPSARVTGKILLDDTDI 73

Query: 417 ---------VRSYIGYCPQFDALNDRLTPREHLEFYSRV-------RNVPSVLLNTIVNE 460
                    +R  +G   Q      +  P   +  Y  V         V     + IV  
Sbjct: 74  YDRGVDPVSIRRRVGMVFQ------KPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVES 127

Query: 461 SLNKFAL-GHYSDR---EVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFL 516
           SL + AL     DR       LSGG +++L  A  +   P +I +DEP S +DP +   +
Sbjct: 128 SLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKI 187

Query: 517 WTCIERAVSEGRCVILTSHNMEE 539
              IE  + E   +I+ +HNM++
Sbjct: 188 EELIEE-LKEKYTIIIVTHNMQQ 209

Length = 252

>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 61/238 (25%), Positives = 95/238 (39%), Gaps = 38/238 (15%)

Query: 343 LVVKRLFKIYANS-----KGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK 397
           L V  L   YA+         +  +N +S  +  GE   LLG +G GK+T  ++L G   
Sbjct: 4   LNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES 63

Query: 398 PTSGNAYVMNHSI----RDSMDLVRSYIGYCPQ--FDALNDRLTPRE-------HLEFYS 444
           P+ GN       +    R      R  I    Q    A+N R T RE       HL    
Sbjct: 64  PSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLD 123

Query: 445 ---RVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFL 501
              R+     +L    +++S+         D+    LSGG  +++  A AL   P L+ L
Sbjct: 124 KAERLARASEMLRAVDLDDSV--------LDKRPPQLSGGQLQRVCLARALAVEPKLLIL 175

Query: 502 DEPTSGMDPGARRFLWTCIERAVSE-----GRCVILTSHNMEECEALCTKLTIMVNGQ 554
           DE  S +D      L   + R + +     G   +  +H++   E  C ++ +M NGQ
Sbjct: 176 DEAVSNLD----LVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQ 229

Length = 268

>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein

 Score = 50.0 bits (120), Expect = 2e-06
 Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 34/169 (20%)

Query: 360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDL--V 417
             ++ +S  +  GE   ++G +G+GK+T  ++L G   P SG+ +     +   +D+  V
Sbjct: 467 LILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDL-AGLDVQAV 525

Query: 418 RSYIGYCPQ---------FD--ALNDRLTPREHLE------FYSRVRNVPSVLLNTIVNE 460
           R  +G   Q         F+  A    LT  E  E          +R +P + ++T+++E
Sbjct: 526 RRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMP-MGMHTVISE 584

Query: 461 SLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 509
                           TLSGG +++L  A AL+  P ++  DE TS +D
Sbjct: 585 GGG-------------TLSGGQRQRLLIARALVRKPRILLFDEATSALD 620

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686

>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

 Score = 48.0 bits (115), Expect = 3e-06
 Identities = 32/118 (27%), Positives = 54/118 (45%)

Query: 34  IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSG 93
           IG   Q   L    T  E++    RV   P   +   V+E L+   L H +      LSG
Sbjct: 81  IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSG 140

Query: 94  GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 151
           G +++++ A A++  P ++  DEPT  +DP     +    E     G  V++ +H++E
Sbjct: 141 GEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLE 198

Length = 223

>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 38/147 (25%), Positives = 68/147 (46%), Gaps = 5/147 (3%)

Query: 34  IGYCPQFDALNDRLTPREHLEFYSRVRNV----PSVLLNTIVNESLNKFALGHYSDREVR 89
           +G+  Q  AL   +T  +++ F  RV+      P   +   V+E L    L   +DR   
Sbjct: 76  VGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPA 135

Query: 90  TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSH 148
            LSGG +++++ A AL   P ++ LDEP   +D   R+ L   + R   E     +  +H
Sbjct: 136 QLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTH 195

Query: 149 NMEECEALCTKLTIMVNGQFTCLGSAT 175
           + EE   +  ++ +M  G+   +G+  
Sbjct: 196 DQEEALEVADRVVVMNKGRIEQVGTPD 222

Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239

>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 48.8 bits (117), Expect = 3e-06
 Identities = 35/138 (25%), Positives = 63/138 (45%), Gaps = 15/138 (10%)

Query: 39  QFDALNDRLTPREHLEF----YSRVRNVPSVLLNT----IVNESLNKFALGHYSDREVRT 90
           Q + +N RLT R+ + F    YS+ R      L      I+NE++    L   SDR +  
Sbjct: 82  QENHINSRLTVRDLVGFGRFPYSQGR------LTKEDRRIINEAIEYLHLEDLSDRYLDE 135

Query: 91  LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHN 149
           LSGG +++   A+ L  +   + LDEP + +D      +   + R   E G+ +++  H+
Sbjct: 136 LSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHD 195

Query: 150 MEECEALCTKLTIMVNGQ 167
           +         +  + NG+
Sbjct: 196 INFASCYSDHIVALKNGK 213

Length = 252

>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 48.5 bits (115), Expect = 3e-06
 Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 11/118 (9%)

Query: 67  LNTIVNESLNKFAL-GHYSDR---EVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 122
           +  IV E L K  L     DR       LSGG +++L+ A AL   P ++ +DEPTS +D
Sbjct: 126 IKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMID 185

Query: 123 PGARRFLWTCIERAVSEGR---CVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 177
               +     IE+ ++E +    +++ SHN ++   +   +  + NG+    GS+  +
Sbjct: 186 IVNSQ----AIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI 239

Length = 257

>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 48.5 bits (115), Expect = 3e-06
 Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 11/119 (9%)

Query: 66  LLNTIVNESLNKFALGHYS----DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGM 121
           L++  V ESL + A+   +    DR  +  SGG ++++  A AL   P ++ LDEPTS +
Sbjct: 119 LIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSAL 178

Query: 122 DPGARRFLWTCIERAVSEGR---CVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 177
           DP +     + IE  + E +     I+ +HN+++   +  +   ++NG     G    +
Sbjct: 179 DPISS----SEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233

Length = 251

>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed

 Score = 49.3 bits (119), Expect = 3e-06
 Identities = 46/173 (26%), Positives = 67/173 (38%), Gaps = 53/173 (30%)

Query: 376 GLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLT 435
           G+LGLNGAGK+T  +++ G  K   G A      I+         +GY PQ   L+   T
Sbjct: 37  GVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-GIK---------VGYLPQEPQLDPEKT 86

Query: 436 PREHLEFYSRVRNVPSVLLNTIVNESLNKFAL-----------------------GHYSD 472
            RE++E    V  V + L     NE    +A                            D
Sbjct: 87  VRENVE--EGVAEVKAAL--DRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLD 142

Query: 473 RE----------------VRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 509
            +                V  LSGG +R+++    LL  P ++ LDEPT+ +D
Sbjct: 143 SQLEIAMDALRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLD 195

Length = 556

>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 48.7 bits (116), Expect = 3e-06
 Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 10/82 (12%)

Query: 71  VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW 130
           VN+ L+  ALG         LSGG +++L  A  L  +P +I +DEP S +DP A   + 
Sbjct: 190 VNDRLDDNALG---------LSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIE 240

Query: 131 TCIERAVSEGRCVILTSHNMEE 152
             IE  ++E   V++ +HNM++
Sbjct: 241 DLIEE-LAEEYTVVVVTHNMQQ 261

Length = 305

>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional

 Score = 48.2 bits (115), Expect = 3e-06
 Identities = 43/147 (29%), Positives = 68/147 (46%), Gaps = 7/147 (4%)

Query: 369 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMD------LVRSYIG 422
           V RGE   L+G +G+GK+T   +L G    +SG   ++   +   MD      L   ++G
Sbjct: 33  VKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLH-QMDEEARAKLRAKHVG 91

Query: 423 YCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGN 482
           +  Q   L   L   E++E  + +R   S          L +  LG   D     LSGG 
Sbjct: 92  FVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGE 151

Query: 483 KRKLSTAIALLGNPPLIFLDEPTSGMD 509
           +++++ A A  G P ++F DEPT  +D
Sbjct: 152 QQRVALARAFNGRPDVLFADEPTGNLD 178

Length = 228

>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 53/221 (23%), Positives = 95/221 (42%), Gaps = 35/221 (15%)

Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDL 416
           G   A+ +I+  +   +   L+G +G GK+T  + L         N  + +  I   + L
Sbjct: 14  GDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRM------NDLIPSVKIEGEVLL 67

Query: 417 VRSYIGYCPQFDALNDR--------------LTPREHLEFYSRVRNVPS-VLLNTIVNES 461
               I Y    D    R              ++  +++ +  R   +     L+ IV +S
Sbjct: 68  DGQDI-YKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKS 126

Query: 462 LNKFAL-GHYSDREVRT---LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW 517
           L   AL     DR  ++   LSGG +++L  A AL   P ++ +DEPTS +DP     + 
Sbjct: 127 LKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDP-----IS 181

Query: 518 TC-IERAVSEGR---CVILTSHNMEECEALCTKLTIMVNGQ 554
           T  IE  + E +    +++ +HNM++   +  K    +NG+
Sbjct: 182 TLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGE 222

Length = 250

>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional

 Score = 49.3 bits (118), Expect = 3e-06
 Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 1/149 (0%)

Query: 365 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYC 424
           I+  +  GE    +G +G GK+T  +M+ G    TSG+ ++    + D     R  +G  
Sbjct: 22  INLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERG-VGMV 80

Query: 425 PQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKR 484
            Q  AL   L+  E++ F  ++       +N  VN+      L H  DR+ + LSGG ++
Sbjct: 81  FQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQ 140

Query: 485 KLSTAIALLGNPPLIFLDEPTSGMDPGAR 513
           +++    L+  P +  LDEP S +D   R
Sbjct: 141 RVAIGRTLVAEPSVFLLDEPLSNLDAALR 169

Length = 369

>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 48.5 bits (115), Expect = 3e-06
 Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 12/131 (9%)

Query: 51  EHLEFYSRVRNVPS-VLLNTIVNESLNKFAL-GHYSDRE---VRTLSGGNKRKLSTAIAL 105
           E++ +  R+R V    +L   V  +L   AL     DR       LSGG +++L  A AL
Sbjct: 117 ENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARAL 176

Query: 106 LGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGR---CVILTSHNMEECEALCTKLTI 162
             +P ++  DEPTS +DP A       IE  +S+ +    +++ +HNM++   +      
Sbjct: 177 ATDPEILLFDEPTSALDPIAT----ASIEELISDLKNKVTILIVTHNMQQAARVSDYTAY 232

Query: 163 MVNGQFTCLGS 173
           M  G+    G+
Sbjct: 233 MYMGELIEFGA 243

Length = 265

>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 48.5 bits (115), Expect = 3e-06
 Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 12/131 (9%)

Query: 438 EHLEFYSRVRNVPS-VLLNTIVNESLNKFAL-GHYSDRE---VRTLSGGNKRKLSTAIAL 492
           E++ +  R+R V    +L   V  +L   AL     DR       LSGG +++L  A AL
Sbjct: 117 ENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARAL 176

Query: 493 LGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGR---CVILTSHNMEECEALCTKLTI 549
             +P ++  DEPTS +DP A       IE  +S+ +    +++ +HNM++   +      
Sbjct: 177 ATDPEILLFDEPTSALDPIAT----ASIEELISDLKNKVTILIVTHNMQQAARVSDYTAY 232

Query: 550 MVNGQFTCLGS 560
           M  G+    G+
Sbjct: 233 MYMGELIEFGA 243

Length = 265

>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional

 Score = 48.2 bits (115), Expect = 3e-06
 Identities = 57/231 (24%), Positives = 103/231 (44%), Gaps = 31/231 (13%)

Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKML--------- 392
           +L V  L   Y      K A+N +S      E   L+G +G+GK+T  + +         
Sbjct: 5   ILQVSDLSVYY----NKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPE 60

Query: 393 ---TGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALND-RLTPREHLEFYSRVRN 448
              TG+I     N Y       D++DL R  IG    F   N   ++  E++ +  R++ 
Sbjct: 61  VTITGSIVYNGHNIYSPR---TDTVDL-RKEIGMV--FQQPNPFPMSIYENVVYGLRLKG 114

Query: 449 VP-SVLLNTIVNESLNKFAL-GHYSDR---EVRTLSGGNKRKLSTAIALLGNPPLIFLDE 503
           +    +L+  V +SL   ++     DR       LSGG ++++  A  L  +P +I LDE
Sbjct: 115 IKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDE 174

Query: 504 PTSGMDP-GARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNG 553
           PTS +DP  A +   T +   + +   ++L + +M++   +  +    ++G
Sbjct: 175 PTSALDPISAGKIEETLLG--LKDDYTMLLVTRSMQQASRISDRTGFFLDG 223

Length = 252

>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter

 Score = 47.8 bits (114), Expect = 4e-06
 Identities = 26/105 (24%), Positives = 48/105 (45%)

Query: 47  LTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALL 106
               E++ F   V  VP   +   V  +L    L H        LSGG +++++ A A++
Sbjct: 93  RNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIV 152

Query: 107 GNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 151
            +P ++  DEPT  +DP     +   +++    G  V++ +H  E
Sbjct: 153 NSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE 197

FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214

>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

 Score = 49.2 bits (118), Expect = 4e-06
 Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 1/97 (1%)

Query: 89  RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 148
            TLSGG +++++ A AL G+P L+ LDEP S +D      L   I  A + G  V++ +H
Sbjct: 471 ATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAH 530

Query: 149 NMEECEALCTKLTIMVNGQFTCLGSATHLKSKSMALP 185
                 A   K+ ++ +G+    G    + +K +  P
Sbjct: 531 RPSAL-ASVDKILVLQDGRIAAFGPREEVLAKVLRPP 566

Length = 580

>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 48.3 bits (115), Expect = 4e-06
 Identities = 27/98 (27%), Positives = 52/98 (53%), Gaps = 1/98 (1%)

Query: 71  VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDP-GARRFL 129
           V+ +L +  + H  D+    LS G K++++ A  L+  P ++ LDEPT+G+DP G    +
Sbjct: 122 VDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIM 181

Query: 130 WTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 167
              +E     G  +I+ +H+++     C  + +M  G+
Sbjct: 182 KLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGR 219

Length = 283

>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional

 Score = 49.5 bits (119), Expect = 4e-06
 Identities = 21/46 (45%), Positives = 29/46 (63%)

Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
           G KP    IS   G G  +GL+G NG GK+T  K+L G ++P++GN
Sbjct: 12  GAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGN 57

Length = 530

>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional

 Score = 48.3 bits (115), Expect = 4e-06
 Identities = 54/216 (25%), Positives = 100/216 (46%), Gaps = 27/216 (12%)

Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIR 411
           G   A+  I+  +   E   ++G +G GK+T  K L   ++      T+G     + +I 
Sbjct: 35  GEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIF 94

Query: 412 D---SMDLVRSYIGYC-----PQFDALNDRLT--PREHLEFYSRVRNVPSVLLNTIVNES 461
           D   S++ +R+ +G       P   ++ D +T  P+ H      +++     L+ IV +S
Sbjct: 95  DKSYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIH-----GIKD--KKTLDEIVEKS 147

Query: 462 LNKFAL-GHYSDR---EVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW 517
           L   A+     DR       LSGG +++L  A  L   P +I +DEPTS +DP +   + 
Sbjct: 148 LRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVE 207

Query: 518 TCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNG 553
             ++  + +   +I+ +HNM++   +  K    +NG
Sbjct: 208 ELVQE-LKKDYSIIIVTHNMQQAARISDKTAFFLNG 242

Length = 271

>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional

 Score = 47.5 bits (113), Expect = 5e-06
 Identities = 34/121 (28%), Positives = 50/121 (41%), Gaps = 13/121 (10%)

Query: 33  YIGYCPQFDALNDRLTPREHLEFYS-----RVRNVPSVLLNTIVNESLNKFALGHYSDRE 87
           ++ Y      L   L+  E+L F       R + +P   L  IV        L  Y D  
Sbjct: 83  FMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSAL-AIV-------GLAGYEDTL 134

Query: 88  VRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTS 147
           VR LS G K++L+ A   L   PL  LDEP + +D      +   I   +  G   ++T+
Sbjct: 135 VRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTT 194

Query: 148 H 148
           H
Sbjct: 195 H 195

Length = 214

>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed

 Score = 48.4 bits (116), Expect = 5e-06
 Identities = 32/133 (24%), Positives = 68/133 (51%), Gaps = 1/133 (0%)

Query: 42  ALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLST 101
           AL   +T  E++ F  R++  P+  +   V E+L    L  ++ R+   LSGG +++++ 
Sbjct: 96  ALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAI 155

Query: 102 AIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKL 160
           A A++  P ++ LDE  S +D   R+ +   ++    + G   +  +H+ EE   +  ++
Sbjct: 156 ARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRI 215

Query: 161 TIMVNGQFTCLGS 173
            +M +G+    G+
Sbjct: 216 VVMRDGRIEQDGT 228

Length = 375

>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 28/126 (22%), Positives = 46/126 (36%), Gaps = 38/126 (30%)

Query: 12  TLLLTTQKVPGSNPTIDKNLSYIG---------------YCPQFDALNDRLTPREHLEFY 56
           TLL         N +++ ++ Y G               Y  + D     LT RE L+F 
Sbjct: 48  TLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFA 107

Query: 57  SRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDE 116
            R +                        +  VR +SGG ++++S A AL+    ++  D 
Sbjct: 108 LRCKG-----------------------NEFVRGISGGERKRVSIAEALVSRASVLCWDN 144

Query: 117 PTSGMD 122
            T G+D
Sbjct: 145 STRGLD 150

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202

>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

 Score = 47.8 bits (114), Expect = 5e-06
 Identities = 26/78 (33%), Positives = 39/78 (50%)

Query: 73  ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTC 132
           E L K  L        R LSGG +++++ A AL   P +I  DEPTS +DP     +   
Sbjct: 127 ELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNT 186

Query: 133 IERAVSEGRCVILTSHNM 150
           I +   E R +++ +H M
Sbjct: 187 IRQLAQEKRTMVIVTHEM 204

Length = 250

>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 48.2 bits (114), Expect = 5e-06
 Identities = 52/205 (25%), Positives = 84/205 (40%), Gaps = 42/205 (20%)

Query: 1   MGLTTTPKRVVTLLLTT------QKVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLE 54
           +G  T  K++ +L L T      QK      +I  N   + Y P+ + +NDR        
Sbjct: 147 LGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDN---VAYGPRNNGINDR-------- 195

Query: 55  FYSRVRNVPSVLLNTIVNESLNKFALGHYS----DREVRTLSGGNKRKLSTAIALLGNPP 110
                      +L  IV +SL   AL        D+    LSGG +++L  A A+   P 
Sbjct: 196 ----------KILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPE 245

Query: 111 LIFLDEPTSGMDPGARRFLWTCIERAVSEGR---CVILTSHNMEECEALCTKLTIMVNGQ 167
           ++ +DEPTS +DP A       IE  + E +    +I+ +H+M + + +  +      G 
Sbjct: 246 VLLMDEPTSALDPIAT----AKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGW 301

Query: 168 FTCLGSAT----HLKSKSMALPVSG 188
               G       H K+K     +SG
Sbjct: 302 IEEAGETKTIFIHPKNKRTKDYISG 326

Length = 329

>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 47.7 bits (113), Expect = 5e-06
 Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 1/62 (1%)

Query: 91  LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 150
           LSGG +++L  A AL   P L+ LDEPTS +DP +   +   + + +S    +I+ +HNM
Sbjct: 143 LSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELL-KELSHNLSMIMVTHNM 201

Query: 151 EE 152
           ++
Sbjct: 202 QQ 203

Length = 246

>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins

 Score = 46.6 bits (111), Expect = 5e-06
 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 6/66 (9%)

Query: 91  LSGGNKRKLSTAIAL----LGNPPLIFLDEPTSGMDP-GARRFLWTCIERAVSEGRCVIL 145
           LSGG K   + A+ L    L   PL  LDE   G+DP   +      +E  V +G  VI+
Sbjct: 78  LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLV-KGAQVIV 136

Query: 146 TSHNME 151
            +H  E
Sbjct: 137 ITHLPE 142

ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162

>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins

 Score = 46.6 bits (111), Expect = 5e-06
 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 6/66 (9%)

Query: 478 LSGGNKRKLSTAIAL----LGNPPLIFLDEPTSGMDP-GARRFLWTCIERAVSEGRCVIL 532
           LSGG K   + A+ L    L   PL  LDE   G+DP   +      +E  V +G  VI+
Sbjct: 78  LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLV-KGAQVIV 136

Query: 533 TSHNME 538
            +H  E
Sbjct: 137 ITHLPE 142

ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162

>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 47.7 bits (113), Expect = 5e-06
 Identities = 57/222 (25%), Positives = 92/222 (41%), Gaps = 35/222 (15%)

Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKML------------TGAIKPTSGNAY 404
           G   A+  I     + E   L+G +G GK+T  + L            TG +     N Y
Sbjct: 16  GKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIY 75

Query: 405 VMNHSIRDSMDLVRSYIGYCPQFDALND-RLTPREHLEFYSRVRNVPS-VLLNTIVNESL 462
             N    D + L R  +G    F   N    +  E++ +  R+  V    +L+  V  SL
Sbjct: 76  APN---EDVVQL-RKQVGMV--FQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSL 129

Query: 463 NKFALGHYSD------REVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFL 516
            + A+  + +          +LSGG ++++  A  L   P +I LDEPTS +DP +    
Sbjct: 130 KQAAI--WDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISS--- 184

Query: 517 WTCIERAVSEGR---CVILTSHNMEECEALCTKLTIMVNGQF 555
            T IE  + E R    +IL +H+M +   +  K    + G  
Sbjct: 185 -TQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNL 225

Length = 252

>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional

 Score = 47.7 bits (113), Expect = 6e-06
 Identities = 20/61 (32%), Positives = 36/61 (59%)

Query: 91  LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 150
           LSGG ++++S A AL   P ++  DEPTS +DP     +   +++   EG+ +++ +H M
Sbjct: 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM 212

Query: 151 E 151
            
Sbjct: 213 G 213

Length = 257

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score = 48.3 bits (116), Expect = 7e-06
 Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 2/83 (2%)

Query: 85  DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPG-ARRFLWTCIERAVSEGRCV 143
           D +V  LS G ++++    AL     L+ LDEPT+ + P  A       + R  +EG+ +
Sbjct: 135 DAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEI-LRRLAAEGKTI 193

Query: 144 ILTSHNMEECEALCTKLTIMVNG 166
           I  +H ++E  A+  ++T++  G
Sbjct: 194 IFITHKLKEVMAIADRVTVLRRG 216

Length = 501

>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional

 Score = 47.4 bits (113), Expect = 7e-06
 Identities = 35/109 (32%), Positives = 58/109 (53%), Gaps = 13/109 (11%)

Query: 67  LNTIVNESLNKFAL-GHYSDREVRT---LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 122
           L+ IV +SL   AL     DR  ++   LSGG +++L  A AL   P ++ +DEPTS +D
Sbjct: 119 LDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALD 178

Query: 123 PGARRFLWTC-IERAVSEGR---CVILTSHNMEECEALCTKLTIMVNGQ 167
           P     + T  IE  + E +    +++ +HNM++   +  K    +NG+
Sbjct: 179 P-----ISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGE 222

Length = 250

>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system

 Score = 47.2 bits (113), Expect = 8e-06
 Identities = 24/96 (25%), Positives = 48/96 (50%), Gaps = 1/96 (1%)

Query: 73  ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDP-GARRFLWT 131
            +L +  L   + +    LSGG +++++ A AL+  P LI  DEP + +DP  +R+ +  
Sbjct: 127 AALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDL 186

Query: 132 CIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 167
                  EG  VI++ H ++       ++  + +G+
Sbjct: 187 LKRINREEGITVIVSLHQVDLAREYADRIVGLKDGR 222

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241

>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed

 Score = 47.0 bits (112), Expect = 8e-06
 Identities = 46/146 (31%), Positives = 71/146 (48%), Gaps = 17/146 (11%)

Query: 34  IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSG 93
           IGY PQ   L+  L P   +  + R+R  P      I+  +L +   GH  D  ++ LSG
Sbjct: 69  IGYVPQKLYLDTTL-PLT-VNRFLRLR--PGTKKEDIL-PALKRVQAGHLIDAPMQKLSG 123

Query: 94  GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC-VILTSHNM-- 150
           G  +++  A ALL  P L+ LDEPT G+D   +  L+  I++   E  C V++ SH++  
Sbjct: 124 GETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHL 183

Query: 151 ---EECEALCTKLTIMVNGQFTCLGS 173
              +  E LC      +N    C G+
Sbjct: 184 VMAKTDEVLC------LNHHICCSGT 203

Length = 251

>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 47.4 bits (113), Expect = 8e-06
 Identities = 24/93 (25%), Positives = 46/93 (49%)

Query: 75  LNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIE 134
           L K  +   +D     LSGG +++++ A AL   P ++  DEPTS +DP     +   ++
Sbjct: 137 LAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQ 196

Query: 135 RAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 167
               EGR +++ +H M     + + +  +  G+
Sbjct: 197 DLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGK 229

Length = 256

>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein

 Score = 47.3 bits (113), Expect = 8e-06
 Identities = 35/91 (38%), Positives = 48/91 (52%), Gaps = 11/91 (12%)

Query: 67  LNTIVNESLNKFAL-GHYSDREVR---TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 122
           L+ IV ESL K AL     DR       LSGG +++L  A AL   P ++ LDEPTS +D
Sbjct: 117 LDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALD 176

Query: 123 PGARRFLWTCIERAVSEGR---CVILTSHNM 150
           P A       IE  + E +    +++ +HNM
Sbjct: 177 PIATG----KIEELIQELKKKYTIVIVTHNM 203

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247

>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 47.4 bits (112), Expect = 8e-06
 Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 2/96 (2%)

Query: 84  SDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCV 143
           SD   R LSGG ++ L  A  L  NP ++ LDEPTS +DP     +   I R++++   V
Sbjct: 158 SDSPFR-LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFI-RSLADRLTV 215

Query: 144 ILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 179
           I+ +HN+ +   +  +  +  +G+    G    L S
Sbjct: 216 IIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFS 251

Length = 276

>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional

 Score = 48.4 bits (115), Expect = 8e-06
 Identities = 47/200 (23%), Positives = 87/200 (43%), Gaps = 40/200 (20%)

Query: 354 NSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS 413
           +SK +KP ++ I+  +  G    ++G  G GKT+    + G +                S
Sbjct: 625 DSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSH-----------AETS 673

Query: 414 MDLVRSYIGYCPQ----FDALNDRLTPREHLEF--------YSRVRNVPSVLLNTIVNES 461
             ++R  + Y PQ    F+A     T RE++ F        Y R  +V      T +   
Sbjct: 674 SVVIRGSVAYVPQVSWIFNA-----TVRENILFGSDFESERYWRAIDV------TALQHD 722

Query: 462 LNKFA---LGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPG-ARRFLW 517
           L+      L    +R V  +SGG K+++S A A+  N  +   D+P S +D   A +   
Sbjct: 723 LDLLPGRDLTEIGERGV-NISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFD 781

Query: 518 TCIERAVSEGRCVILTSHNM 537
           +C++  + +G+  +L ++ +
Sbjct: 782 SCMKDEL-KGKTRVLVTNQL 800

Length = 1495

>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional

 Score = 46.5 bits (110), Expect = 9e-06
 Identities = 34/131 (25%), Positives = 56/131 (42%), Gaps = 8/131 (6%)

Query: 18  QKVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNK 77
           Q +     T  K L ++G+      +N  LT RE+  +     ++        + E    
Sbjct: 63  QSIKKDLCTYQKQLCFVGH---RSGINPYLTLRENCLY-----DIHFSPGAVGITELCRL 114

Query: 78  FALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAV 137
           F+L H  D     LS G KR+++     +    L  LDEP   +D  +   + T I+   
Sbjct: 115 FSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHR 174

Query: 138 SEGRCVILTSH 148
           ++G  V+LTSH
Sbjct: 175 AKGGAVLLTSH 185

Length = 200

>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 20/74 (27%), Positives = 40/74 (54%)

Query: 90  TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN 149
           T SGG +++++ A   + + P++ LDEPT+ +D   R+ +   I  A + G  +I   H+
Sbjct: 149 TFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHD 208

Query: 150 MEECEALCTKLTIM 163
            E  E +  ++  +
Sbjct: 209 EEVRELVADRVMDV 222

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224

>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE

 Score = 46.7 bits (112), Expect = 1e-05
 Identities = 42/156 (26%), Positives = 63/156 (40%), Gaps = 23/156 (14%)

Query: 34  IGYCPQFDALNDRLTPREHLE-----FYSRVRNVPSVLLNTIVNESLNKF-ALGHYSDRE 87
           I Y PQ   +  RLT  E+L         R R +P        +E    F  L     R 
Sbjct: 77  IAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIP--------DEIYELFPVLKEMLGRR 128

Query: 88  VRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-----GRC 142
              LSGG +++L+ A AL+  P L+ LDEPT G+ P     +   I R +       G  
Sbjct: 129 GGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPS----IIKDIGRVIRRLRAEGGMA 184

Query: 143 VILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 178
           ++L    ++    L  +  +M  G+    G+   L 
Sbjct: 185 ILLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score = 48.2 bits (115), Expect = 1e-05
 Identities = 35/155 (22%), Positives = 59/155 (38%), Gaps = 17/155 (10%)

Query: 372 GECFGLLGLNGAGKTTTFKMLTGAI----KPTSGNAYVMNHSIRDSMDLVRSYIGYCPQF 427
           GE   +LG  G+G +T  K +            G       +  +     R  + Y  + 
Sbjct: 87  GELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAET 146

Query: 428 DALNDRLTPREHLEFYSRVRNVPS--------VLLNTIVNESLNKFALGHYSDREV---- 475
           D     LT  E L+F +R +   +             I +  +  + L H  + +V    
Sbjct: 147 DVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDF 206

Query: 476 -RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 509
            R +SGG ++++S A A LG   +   D  T G+D
Sbjct: 207 VRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLD 241

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 22/79 (27%), Positives = 39/79 (49%)

Query: 72  NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT 131
           +E +++  L H  DR +  LSGG  ++++ A AL  +    F DEP+S +D   R     
Sbjct: 121 DELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAAR 180

Query: 132 CIERAVSEGRCVILTSHNM 150
            I     +   V++  H++
Sbjct: 181 LIRELAEDDNYVLVVEHDL 199

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255

>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 46.8 bits (112), Expect = 1e-05
 Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 21/97 (21%)

Query: 67  LNTIVNESLNKFALGHYSDREV--------RTLSGGNKRKLSTAIALLGNPPLIFLDEPT 118
           L+ IV  SL K AL      EV          LSGG +++L  A AL   P ++ +DEPT
Sbjct: 122 LDEIVESSLKKAALWD----EVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPT 177

Query: 119 SGMDP-GARRFLWTCIERAVSEGR---CVILTSHNME 151
           S +DP    +     IE  ++E +    +++ +HNM+
Sbjct: 178 SALDPISTLK-----IEELITELKKKYTIVIVTHNMQ 209

Length = 253

>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 46.6 bits (110), Expect = 1e-05
 Identities = 31/82 (37%), Positives = 43/82 (52%), Gaps = 10/82 (12%)

Query: 71  VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW 130
           V + LNK ALG         LSGG +++L  A AL   P ++ +DEP S +DP A   + 
Sbjct: 140 VKDKLNKSALG---------LSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVE 190

Query: 131 TCIERAVSEGRCVILTSHNMEE 152
             I    SE    I+T HNM++
Sbjct: 191 ELIHSLRSELTIAIVT-HNMQQ 211

Length = 259

>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional

 Score = 47.9 bits (114), Expect = 1e-05
 Identities = 38/146 (26%), Positives = 71/146 (48%), Gaps = 15/146 (10%)

Query: 365 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYC 424
           ++FG+       ++G NG GK+T  K+++G ++P+SG  +      R +   VR  +   
Sbjct: 528 LNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVF------RSAK--VRMAVFSQ 579

Query: 425 PQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFAL-GHYSDREVRTLSGGNK 483
              D L+    P  ++     +R  P V    +    L  F + G+ + + + TLSGG K
Sbjct: 580 HHVDGLDLSSNPLLYM-----MRCFPGVPEQKL-RAHLGSFGVTGNLALQPMYTLSGGQK 633

Query: 484 RKLSTAIALLGNPPLIFLDEPTSGMD 509
            +++ A      P ++ LDEP++ +D
Sbjct: 634 SRVAFAKITFKKPHILLLDEPSNHLD 659

Length = 718

>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein

 Score = 47.8 bits (114), Expect = 1e-05
 Identities = 53/229 (23%), Positives = 90/229 (39%), Gaps = 45/229 (19%)

Query: 359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN--------HSI 410
            P +  ++F +  GE   L+G +G+GK+T   +L    +PT G   +          H +
Sbjct: 494 VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYL 553

Query: 411 RDSMDLV-----------RSYIGY----CPQFDALNDRLTPREHLEFYSRVRNVPSVLLN 455
              + LV           R  I Y     P  + +        H +F     N      +
Sbjct: 554 HRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAH-DFIMEFPNG----YD 608

Query: 456 TIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRF 515
           T V E  ++             LSGG K++++ A AL+  P ++ LDE TS +D    + 
Sbjct: 609 TEVGEKGSQ-------------LSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQL 655

Query: 516 LWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
           L     RA    R V+L +H +   E    ++ ++  G    +G+   L
Sbjct: 656 LQESRSRA---SRTVLLIAHRLSTVER-ADQILVLKKGSVVEMGTHKQL 700

[Transport and binding proteins, Other]. Length = 711

>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 52/208 (25%), Positives = 93/208 (44%), Gaps = 38/208 (18%)

Query: 366 SFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCP 425
              V RGE   +LG +GAGK+T   ++ G + P SG+  +      +  D   +     P
Sbjct: 19  DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTL------NGQDHTTTPPSRRP 72

Query: 426 -----QFDALNDRLTPREHLEFYSRVRNV-----PSVLLNTIVNESLNKFA----LGHYS 471
                Q + L   LT  +         N+     P + LN    E L+  A    +    
Sbjct: 73  VSMLFQENNLFSHLTVAQ---------NIGLGLNPGLKLNAAQREKLHAIARQMGIEDLL 123

Query: 472 DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT-----CIERAVSE 526
            R    LSGG +++++ A  L+   P++ LDEP S +DP  R+ + T     C ER ++ 
Sbjct: 124 ARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLT- 182

Query: 527 GRCVILTSHNMEECEALCTKLTIMVNGQ 554
              +++ SH++E+   +  +  ++ +G+
Sbjct: 183 ---LLMVSHSLEDAARIAPRSLVVADGR 207

Length = 232

>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 46.5 bits (110), Expect = 1e-05
 Identities = 50/199 (25%), Positives = 91/199 (45%), Gaps = 31/199 (15%)

Query: 377 LLGLNGAGKTTTFKMLT--GAIKPT---SGNAYVMNHSIRD-SMDLV--RSYIGYCPQ-- 426
           L+G +G GK+T  + L     + P     G+ Y+    I D ++D+V  R  +G   Q  
Sbjct: 34  LIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKP 93

Query: 427 -------FD--ALNDRLTPREHLEFYSRV--RNVPSVLLNTIVNESLNKFALGHYSDREV 475
                  FD  A   R+   +  +F       ++ +  L   V + L+K ALG       
Sbjct: 94  NPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALG------- 146

Query: 476 RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 535
             LSGG +++L  A  +  +P +I +DEP S +DP +   +   I + + E   +++ +H
Sbjct: 147 --LSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHK-LKEDYTIVIVTH 203

Query: 536 NMEECEALCTKLTIMVNGQ 554
           NM++   +    +  +NG+
Sbjct: 204 NMQQATRVSKYTSFFLNGE 222

Length = 250

>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 27/82 (32%), Positives = 43/82 (52%)

Query: 87  EVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILT 146
           +V TLS    + +  A A   N  ++ +DEPTS +       L+T I +    G  ++  
Sbjct: 131 KVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYI 190

Query: 147 SHNMEECEALCTKLTIMVNGQF 168
           SH MEE   LC ++TI+ +GQ+
Sbjct: 191 SHKMEEIFQLCDEITILRDGQW 212

Length = 491

>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 27/82 (32%), Positives = 43/82 (52%)

Query: 474 EVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILT 533
           +V TLS    + +  A A   N  ++ +DEPTS +       L+T I +    G  ++  
Sbjct: 131 KVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYI 190

Query: 534 SHNMEECEALCTKLTIMVNGQF 555
           SH MEE   LC ++TI+ +GQ+
Sbjct: 191 SHKMEEIFQLCDEITILRDGQW 212

Length = 491

>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein

 Score = 47.1 bits (112), Expect = 2e-05
 Identities = 36/129 (27%), Positives = 63/129 (48%), Gaps = 2/129 (1%)

Query: 39  QFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRK 98
           QF AL    T  E++ F   ++ +P       V+E L    L  ++DR+   LSGG +++
Sbjct: 114 QF-ALLPWRTVEENVAFGLEMQGMPKAERRKRVDEQLELVGLAQWADRKPGELSGGMQQR 172

Query: 99  LSTAIALLGNPPLIFLDEPTSGMDPGARRFLW-TCIERAVSEGRCVILTSHNMEECEALC 157
           +  A A     P++ +DEP S +DP  R  L    +E      + ++  SH+++E   + 
Sbjct: 173 VGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLELQSKLKKTIVFVSHDLDEALKIG 232

Query: 158 TKLTIMVNG 166
            ++ IM  G
Sbjct: 233 NRIAIMEGG 241

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382

>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 91  LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 150
           LSGG +++++ A AL+GNP ++  DE TS +D  +   +   + R +  GR VI+ +H +
Sbjct: 594 LSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNM-REICRGRTVIIIAHRL 652

Query: 151 EECEALCTKLTIMVNGQ 167
               A C ++ ++  GQ
Sbjct: 653 STVRA-CDRIIVLEKGQ 668

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694

>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 5/105 (4%)

Query: 66  LLNTIVNESLNKFAL-GHYSDR---EVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGM 121
            L+ IV +SL   A+     DR       LSGG +++L  A  L   P +I +DEPTS +
Sbjct: 139 TLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSAL 198

Query: 122 DPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNG 166
           DP +   +   ++  + +   +I+ +HNM++   +  K    +NG
Sbjct: 199 DPISTLKVEELVQE-LKKDYSIIIVTHNMQQAARISDKTAFFLNG 242

Length = 271

>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 46.1 bits (109), Expect = 2e-05
 Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 7/82 (8%)

Query: 90  TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGR---CVILT 146
           +LSGG ++++  A  L   P +I LDEPTS +DP +     T IE  + E R    +IL 
Sbjct: 148 SLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISS----TQIENMLLELRDQYTIILV 203

Query: 147 SHNMEECEALCTKLTIMVNGQF 168
           +H+M +   +  K    + G  
Sbjct: 204 THSMHQASRISDKTAFFLTGNL 225

Length = 252

>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 48/204 (23%), Positives = 79/204 (38%), Gaps = 37/204 (18%)

Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG--AIKPTSGNAYVMNHSIRDSM 414
                +  ++  + +GE   ++G NG+GK+T  K++ G  A K   G+      SI D  
Sbjct: 18  NENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLE 77

Query: 415 DLVRSYIGYCPQFD----------------ALNDR-----LTPREHLEFYSRVRNVPSVL 453
              R+++G    F                 A N +     L   + LEF           
Sbjct: 78  PEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFL---------- 127

Query: 454 LNTIVNESLNKFALG-HYSDREVRT-LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPG 511
              I+NE L    +   +  R V    SGG K++       L +  L  LDE  SG+D  
Sbjct: 128 --EIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDID 185

Query: 512 ARRFLWTCIERAVSEGRCVILTSH 535
           A + +   I + ++    +IL +H
Sbjct: 186 ALKIIAEGINKLMTSENSIILITH 209

Length = 252

>gnl|CDD|213246 cd03279, ABC_sbcCD, ATP-binding cassette domain of sbcCD

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 49/202 (24%), Positives = 74/202 (36%), Gaps = 31/202 (15%)

Query: 365 ISF-GVGRGECFGLLGLNGAGKTTTFKMLTGAI--KPTSGNAYVMNHSIRDSMDLVRSYI 421
           I F G+     F + G  GAGK+T    +T A+  K           S+    +      
Sbjct: 20  IDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGE------ 73

Query: 422 GYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSD---REVRTL 478
                 D      T +   + Y RV     +  +      L     G +     R V TL
Sbjct: 74  ------DTAEVSFTFQLGGKKY-RVERSRGLDYDQFTRIVL--LPQGEFDRFLARPVSTL 124

Query: 479 SGGNKRKLSTAIAL--------LGNPPL--IFLDEPTSGMDPGARRFLWTCIERAVSEGR 528
           SGG     S ++AL         G   L  +F+DE    +DP A   + T +E   +E R
Sbjct: 125 SGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENR 184

Query: 529 CVILTSHNMEECEALCTKLTIM 550
            V + SH  E  E +  +L ++
Sbjct: 185 MVGVISHVEELKERIPQRLEVI 206

SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. Length = 213

>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 11/114 (9%)

Query: 67  LNTIVNESLNKFAL-GHYSDR---EVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 122
           L+ IV +SL    L     DR       LSGG +++L  A A+   P ++ +DEP S +D
Sbjct: 122 LDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALD 181

Query: 123 PGARRFLWTCIERAVSEGR---CVILTSHNMEECEALCTKLTIMVNGQFTCLGS 173
           P A       IE  + E +    +I+ +H+M++ + +  ++    +G+     +
Sbjct: 182 PVAT----NVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNT 231

Length = 251

>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 11/114 (9%)

Query: 454 LNTIVNESLNKFAL-GHYSDR---EVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 509
           L+ IV +SL    L     DR       LSGG +++L  A A+   P ++ +DEP S +D
Sbjct: 122 LDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALD 181

Query: 510 PGARRFLWTCIERAVSEGR---CVILTSHNMEECEALCTKLTIMVNGQFTCLGS 560
           P A       IE  + E +    +I+ +H+M++ + +  ++    +G+     +
Sbjct: 182 PVAT----NVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNT 231

Length = 251

>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

 Score = 45.3 bits (107), Expect = 3e-05
 Identities = 23/78 (29%), Positives = 41/78 (52%)

Query: 90  TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN 149
           T+SGG ++ L+   AL+  P L+ LDEP+ G+ P   + ++  IE+   +G  + L   N
Sbjct: 137 TMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQN 196

Query: 150 MEECEALCTKLTIMVNGQ 167
             +   L  +  ++ NG 
Sbjct: 197 ANQALKLADRGYVLENGH 214

Length = 237

>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional

 Score = 46.5 bits (111), Expect = 3e-05
 Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 1/60 (1%)

Query: 89  RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 148
           R LSGG +++L+ A ALL +PP++ LDE TS +D      +   ++  + +GR   + +H
Sbjct: 470 RQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALD-ELMKGRTTFIIAH 528

Length = 588

>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 23/66 (34%), Positives = 37/66 (56%)

Query: 80  LGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE 139
           LG + D     LSGG K++++ A AL+  P L+  DEPT+ +D  + R +   +++   E
Sbjct: 131 LGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLARE 190

Query: 140 GRCVIL 145
             C IL
Sbjct: 191 QGCTIL 196

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220

>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

 Score = 45.3 bits (108), Expect = 3e-05
 Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 83  YSDREV-RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGR 141
           + +R V    SGG K++      LL  P L  LDEP SG+D  A + +   I     EGR
Sbjct: 136 FLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGR 195

Query: 142 CVILTSHNMEECEAL-CTKLTIMVNGQFTCLG 172
            V++ +H     + +   K+ ++ +G+    G
Sbjct: 196 GVLIITHYQRLLDYIKPDKVHVLYDGRIVKSG 227

Length = 251

>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C

 Score = 45.2 bits (107), Expect = 3e-05
 Identities = 23/83 (27%), Positives = 47/83 (56%), Gaps = 9/83 (10%)

Query: 77  KFALGHYSDREVR--TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIE 134
           + A G+ ++   +   LSGG K++++ A AL+ NP ++ LDE TS +D  + +     ++
Sbjct: 135 ELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQ----QVQ 190

Query: 135 RAVSEG---RCVILTSHNMEECE 154
           +A+ +    R V++ +H +   E
Sbjct: 191 QALYDWPERRTVLVIAHRLSTVE 213

TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226

>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed

 Score = 46.5 bits (111), Expect = 3e-05
 Identities = 43/167 (25%), Positives = 71/167 (42%), Gaps = 26/167 (15%)

Query: 367 FGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI---------RDSMDLV 417
             +   E   L+G NGAGK+T  K+L G +    G        I         R+    V
Sbjct: 24  LHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTV 83

Query: 418 RSYI--------GYCPQFDALNDRL--TPRE-HLEFYSRVRNVPSVL----LNTIVNESL 462
             ++         Y  ++  ++  +   P E +L   ++++          L   +NE L
Sbjct: 84  YDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVL 143

Query: 463 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 509
            +  LG   D  + +LSGG  RK +   AL+ NP ++ LDEPT+ +D
Sbjct: 144 AQ--LGLDPDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLD 188

Length = 635

>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 45.4 bits (107), Expect = 3e-05
 Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 5/87 (5%)

Query: 70  IVNESLNKFAL-GHYSDR---EVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGA 125
           IV  SL + AL     DR       LSGG +++L  A  +   P +I +DEP S +DP +
Sbjct: 124 IVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPIS 183

Query: 126 RRFLWTCIERAVSEGRCVILTSHNMEE 152
              +   IE  + E   +I+ +HNM++
Sbjct: 184 TLKIEELIEE-LKEKYTIIIVTHNMQQ 209

Length = 252

>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 45.3 bits (107), Expect = 3e-05
 Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 10/97 (10%)

Query: 71  VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW 130
           V + L+K ALG         LSGG +++L  A  +  +P +I +DEP S +DP +   + 
Sbjct: 136 VKDKLDKSALG---------LSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIE 186

Query: 131 TCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 167
             I + + E   +++ +HNM++   +    +  +NG+
Sbjct: 187 DLIHK-LKEDYTIVIVTHNMQQATRVSKYTSFFLNGE 222

Length = 250

>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 57/223 (25%), Positives = 99/223 (44%), Gaps = 29/223 (13%)

Query: 340 GDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT 399
           G  L++  + K Y    G +  +NQ+   +  G+   ++G +G GK+T  ++L G   P+
Sbjct: 10  GTPLLLNAVSKRY----GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS 65

Query: 400 SGNAYVMN---HSIRDSMDLVRSYIGYCPQF-DALNDRLTPREHLEFYSRVRNVPSVLLN 455
           +G            R+   L+         F DA   RL P     +   + NV   L  
Sbjct: 66  AGELLAGTAPLAEAREDTRLM---------FQDA---RLLP-----WKKVIDNVGLGLKG 108

Query: 456 TIVNESLNKFALGHYSDREVR---TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGA 512
              + +L   A    +DR       LSGG K++++ A AL+  P L+ LDEP   +D   
Sbjct: 109 QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALT 168

Query: 513 RRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQ 554
           R  +   IE    + G  V+L +H++ E  A+  ++ ++  G+
Sbjct: 169 RIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGK 211

Length = 257

>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 45.1 bits (106), Expect = 4e-05
 Identities = 39/159 (24%), Positives = 75/159 (47%), Gaps = 6/159 (3%)

Query: 48  TPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLG 107
           T  + + F    + +P   +   V+E+L    +  +  RE   LSGG K++++ A  +  
Sbjct: 98  TVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIAL 157

Query: 108 NPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILT-SHNMEECEALCTKLTIMVNG 166
            P +I LDE TS +DP  R+ +   I     + +  +L+ +H+++E  A   ++ +M  G
Sbjct: 158 RPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEA-ASSDRILVMKAG 216

Query: 167 QFTCLGSATHLKSKSMALPVSGNDLGRGDPVRSELSRAL 205
           +     + + L + S  +   G D+    P  S L + L
Sbjct: 217 EIIKEAAPSELFATSEDMVEIGLDV----PFSSNLMKDL 251

Length = 277

>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR)

 Score = 46.4 bits (110), Expect = 4e-05
 Identities = 58/224 (25%), Positives = 105/224 (46%), Gaps = 39/224 (17%)

Query: 339  SGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP 398
            SG  + V+ L   Y  ++  +  +  +SF V  G+  GLLG  G+GK+T   +L+  ++ 
Sbjct: 1214 SGGQMDVQGLTAKY--TEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKST---LLSALLRL 1268

Query: 399  TSGNAYVMNHSIR-DSMDLV--RSYIGYCPQ----FDALNDRLTPREHLEFYSRV----- 446
             S    +    +  +S+ L   R   G  PQ    F       T R++L+ Y +      
Sbjct: 1269 LSTEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSG-----TFRKNLDPYEQWSDEEI 1323

Query: 447  -RNVPSVLLNTIVNESLNK--FAL--GHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFL 501
             +    V L +++ +  +K  F L  G Y       LS G+K+ +  A ++L    ++ L
Sbjct: 1324 WKVAEEVGLKSVIEQFPDKLDFVLVDGGY------VLSNGHKQLMCLARSILSKAKILLL 1377

Query: 502  DEPTSGMDPGARRFLWTCIERAVSEGRC-VILTSHNME---ECE 541
            DEP++ +DP   + +   ++++ S   C VIL+ H +E   EC+
Sbjct: 1378 DEPSAHLDPVTLQIIRKTLKQSFSN--CTVILSEHRVEALLECQ 1419

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490

>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 11/93 (11%)

Query: 67  LNTIVNESLNKFAL-GHYSDR--EVRT-LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 122
           L+ IV  SL K  L     DR  E  T LSGG +++L  A A+  +P +I +DEP S +D
Sbjct: 136 LDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALD 195

Query: 123 PGARRFLWTCIERAVSEGR---CVILTSHNMEE 152
           P A       +E  + E R    +++ +H+M++
Sbjct: 196 PIAT----AKVEELIDELRQNYTIVIVTHSMQQ 224

Length = 267

>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 44.9 bits (106), Expect = 4e-05
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 5/90 (5%)

Query: 67  LNTIVNESLNKFALGHYSDREVR----TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 122
           L+ IV  +L K AL      +++     LSGG +++L  A  +   P +I +DEPTS +D
Sbjct: 120 LDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALD 179

Query: 123 PGARRFLWTCIERAVSEGRCVILTSHNMEE 152
           P +   +   +     E   VI+T HNM++
Sbjct: 180 PISTLKIEDLMVELKKEYTIVIVT-HNMQQ 208

Length = 251

>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 45.4 bits (107), Expect = 4e-05
 Identities = 27/91 (29%), Positives = 51/91 (56%), Gaps = 7/91 (7%)

Query: 67  LNTIVNESLNKFALGHYSDREVR----TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 122
           L+ +V +SL + A+      +++     LSGG +++L  A A+   P ++ +DEP S +D
Sbjct: 134 LDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALD 193

Query: 123 P-GARRFLWTCIERAVSEGRCVILTSHNMEE 152
           P   R+    C+E  + E   +I+ +HNM++
Sbjct: 194 PISTRQVEELCLE--LKEQYTIIMVTHNMQQ 222

Length = 274

>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 45.4 bits (107), Expect = 4e-05
 Identities = 27/91 (29%), Positives = 51/91 (56%), Gaps = 7/91 (7%)

Query: 454 LNTIVNESLNKFALGHYSDREVR----TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 509
           L+ +V +SL + A+      +++     LSGG +++L  A A+   P ++ +DEP S +D
Sbjct: 134 LDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALD 193

Query: 510 P-GARRFLWTCIERAVSEGRCVILTSHNMEE 539
           P   R+    C+E  + E   +I+ +HNM++
Sbjct: 194 PISTRQVEELCLE--LKEQYTIIMVTHNMQQ 222

Length = 274

>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 45.4 bits (107), Expect = 4e-05
 Identities = 49/207 (23%), Positives = 89/207 (42%), Gaps = 37/207 (17%)

Query: 358 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT------GAIKPTSGNAYVMNHSI- 410
           T+  +  +S  + + +   ++G +G GK+T  K L         ++   G     N +I 
Sbjct: 19  TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVR-VEGRVEFFNQNIY 77

Query: 411 --RDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNV----------PSVLLNTIV 458
             R +++ +R  +            + P+ +L   S   NV          P + ++ IV
Sbjct: 78  ERRVNLNRLRRQVSM----------VHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIV 127

Query: 459 NESLNKFAL----GHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARR 514
             +L    L     H   +    LSGG +++L  A AL   P ++ +DEP  G+DP A  
Sbjct: 128 ESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASM 187

Query: 515 FLWTCIE--RAVSEGRCVILTSHNMEE 539
            + + I+  R  SE   VI++ HN+ +
Sbjct: 188 KVESLIQSLRLRSELTMVIVS-HNLHQ 213

Length = 261

>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional

 Score = 45.5 bits (108), Expect = 4e-05
 Identities = 46/171 (26%), Positives = 72/171 (42%), Gaps = 35/171 (20%)

Query: 361 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD----SMDL 416
           AV+ ++  +  GE  G++G +G GK+T  + + G +K T G    +   +          
Sbjct: 36  AVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRA 95

Query: 417 VRSYIGYCPQ--FDALNDRLTP----REHLEFY----------SRVRNVPSV--LLNTIV 458
           VRS I    Q    +LN R+T      E L  Y           RV+ +     LL  ++
Sbjct: 96  VRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLI 155

Query: 459 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 509
           N   ++F             SGG  +++  A AL+  P LI  DEP S +D
Sbjct: 156 NRYPHEF-------------SGGQCQRIGIARALILEPKLIICDEPVSALD 193

Length = 331

>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities

 Score = 43.5 bits (102), Expect = 4e-05
 Identities = 30/175 (17%), Positives = 54/175 (30%), Gaps = 53/175 (30%)

Query: 371 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDAL 430
            GE   ++G  G+GKTT  + L   + P  G    ++        L +            
Sbjct: 1   PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQ------------ 48

Query: 431 NDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAI 490
                                               L      +  + SG  + +L+ A+
Sbjct: 49  -----------------------------------LLLIIVGGKKASGSGELRLRLALAL 73

Query: 491 ALLGNPPLIFLDEPTSGMDPGARR------FLWTCIERAVSEGRCVILTSHNMEE 539
           A    P ++ LDE TS +D            L   +     +   VILT+++ ++
Sbjct: 74  ARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKD 128

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148

>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 2/96 (2%)

Query: 73  ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDP-GARRFLWT 131
           E L K  L H  +     LSGG +++++ A AL+  P L+  DEPT  +D   A+     
Sbjct: 124 EMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDL 183

Query: 132 CIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 167
            +E         ++ +H++E  + L  ++  M +GQ
Sbjct: 184 MLELNRELNTSFLVVTHDLELAKKL-DRVLEMKDGQ 218

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221

>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional

 Score = 45.3 bits (108), Expect = 5e-05
 Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 1/96 (1%)

Query: 79  ALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS 138
            +    DR   +LSGG K++++   ALL  P L+ +DEP + +D   +R L   +ER   
Sbjct: 117 GIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAR 176

Query: 139 EGRCVIL-TSHNMEECEALCTKLTIMVNGQFTCLGS 173
           E    IL  SH+++E   L  ++ ++  G+    G 
Sbjct: 177 EINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGP 212

Length = 352

>gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50

 Score = 44.5 bits (106), Expect = 5e-05
 Identities = 28/116 (24%), Positives = 41/116 (35%), Gaps = 21/116 (18%)

Query: 52  HLEFYSR------VRNVPSVLLNTIV--NESLNKFALGHYSDREVRTLSGGNKRKLSTAI 103
            L F +       +    ++L N I       N   L           SGG K   S  I
Sbjct: 74  KLAFENANGKKYTITRSLAILENVIFCHQGESNWPLL-----DMRGRCSGGEKVLASLII 128

Query: 104 ALL------GNPPLIFLDEPTSGMDPGARRF-LWTCIE-RAVSEGRCVILTSHNME 151
            L        N  ++ LDEPT+ +D       L   IE R   +   +I+ +H+ E
Sbjct: 129 RLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEE 184

The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. Length = 204

>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional

 Score = 44.7 bits (106), Expect = 5e-05
 Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 16/85 (18%)

Query: 71  VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW 130
           V + L+K AL         TLSGG +++L  A A+   P ++ +DEP S +DP +     
Sbjct: 153 VKDDLHKSAL---------TLSGGQQQRLCIARAIAVKPDILLMDEPASALDPIST---- 199

Query: 131 TCIERAVSEGR---CVILTSHNMEE 152
             +E  + E +    +I+ +HNM++
Sbjct: 200 MQLEETMFELKKNYTIIIVTHNMQQ 224

Length = 267

>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C

 Score = 44.1 bits (105), Expect = 6e-05
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 1/59 (1%)

Query: 90  TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 148
            LS G ++ L+ A A+L +P ++ LDE TS +D    + +   +E+ + +GR  I+ +H
Sbjct: 139 NLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEK-LMKGRTSIIIAH 196

Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229

>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional

 Score = 45.6 bits (108), Expect = 6e-05
 Identities = 20/69 (28%), Positives = 33/69 (47%)

Query: 335 HGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 394
              D+ DVL V+ L   +   +    AV  +SF + RGE   ++G +G+GK+ T   L  
Sbjct: 5   DELDARDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMR 64

Query: 395 AIKPTSGNA 403
            ++   G  
Sbjct: 65  LLEQAGGLV 73

Length = 623

>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD

 Score = 43.9 bits (104), Expect = 7e-05
 Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 1/78 (1%)

Query: 91  LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR-RFLWTCIERAVSEGRCVILTSHN 149
           LSGG  +++  A+ALL  PP +  DEPT+ +D   + R L    E     G  ++L +H+
Sbjct: 126 LSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHD 185

Query: 150 MEECEALCTKLTIMVNGQ 167
           +     +  ++ +M +G+
Sbjct: 186 LGVVARIADEVAVMDDGR 203

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230

>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional

 Score = 44.6 bits (106), Expect = 7e-05
 Identities = 52/226 (23%), Positives = 85/226 (37%), Gaps = 75/226 (33%)

Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKML------------TGAIKPTSGNAY 404
           G K A+  IS  + +      +G +G GK+T  +               G I+    N Y
Sbjct: 36  GDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIY 95

Query: 405 VMNHSIRDSMDLV--RSYIG------------------YCPQFDALNDRLTPREHLEFYS 444
                    +D+   R  +G                  Y  +   +N+R           
Sbjct: 96  ------DKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNR----------- 138

Query: 445 RVRNVPSVLLNTIVNESLNKFALGHYSDREVR--------TLSGGNKRKLSTAIALLGNP 496
           RV       L+  V  SL   AL      EV+         LSGG +++L  A A+   P
Sbjct: 139 RV-------LDEAVERSLRGAALWD----EVKDRLHENAFGLSGGQQQRLVIARAIAIEP 187

Query: 497 PLIFLDEPTSGMDPGARRFLWTCIERAVSEGR---CVILTSHNMEE 539
            ++ LDEPTS +DP +       IE  ++E +    +++ +HNM++
Sbjct: 188 EVLLLDEPTSALDPIST----LKIEELITELKSKYTIVIVTHNMQQ 229

Length = 272

>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional

 Score = 45.5 bits (108), Expect = 7e-05
 Identities = 48/193 (24%), Positives = 84/193 (43%), Gaps = 33/193 (17%)

Query: 354 NSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS 413
           +SK  +P ++ I+  V  G    ++G  G GKT+    + G + P S  + V        
Sbjct: 625 DSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVV-------- 676

Query: 414 MDLVRSYIGYCPQ----FDALNDRLTPREHLEF--------YSRVRNVPSVLLNTIVNES 461
              +R  + Y PQ    F+A     T R+++ F        Y R  +V ++  +    + 
Sbjct: 677 ---IRGTVAYVPQVSWIFNA-----TVRDNILFGSPFDPERYERAIDVTALQHDL---DL 725

Query: 462 LNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPG-ARRFLWTCI 520
           L    L    +R V  +SGG K+++S A A+  N  +   D+P S +D    R+    CI
Sbjct: 726 LPGGDLTEIGERGV-NISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCI 784

Query: 521 ERAVSEGRCVILT 533
           +  +     V++T
Sbjct: 785 KDELRGKTRVLVT 797

Length = 1622

>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 45.2 bits (108), Expect = 7e-05
 Identities = 51/205 (24%), Positives = 92/205 (44%), Gaps = 16/205 (7%)

Query: 359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLV 417
           K     ++F +  G+   L+G +GAGKT+    L G + P  G+  +    +R+   +  
Sbjct: 363 KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESW 421

Query: 418 R---SYIGYCPQFDA--LNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALG-HY- 470
           R   S++G  PQ     L D +          +++     L N  V+E L     G    
Sbjct: 422 RKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQA---LENAWVSEFLPLLPQGLDTP 478

Query: 471 -SDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC 529
             D+    LS G  ++L+ A ALL    L+ LDEPT+ +D  + + +   +  A S  + 
Sbjct: 479 IGDQAAG-LSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAA-SRRQT 536

Query: 530 VILTSHNMEECEALCTKLTIMVNGQ 554
            ++ +H +E+      ++ +M +GQ
Sbjct: 537 TLMVTHQLEDLAQ-WDQIWVMQDGQ 560

Length = 588

>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

 Score = 45.1 bits (107), Expect = 8e-05
 Identities = 23/79 (29%), Positives = 45/79 (56%), Gaps = 2/79 (2%)

Query: 89  RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 148
             LSGG +++L+ A ALL NPP++ LDE TS +D      +   +++ + +GR  ++ +H
Sbjct: 464 VNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKK-LLKGRTTLIIAH 522

Query: 149 NMEECEALCTKLTIMVNGQ 167
            +        ++ ++ NG+
Sbjct: 523 RLST-IKNADRIIVLDNGR 540

Length = 567

>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein

 Score = 45.1 bits (107), Expect = 8e-05
 Identities = 22/84 (26%), Positives = 46/84 (54%), Gaps = 2/84 (2%)

Query: 90  TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN 149
           TLSGG +++++ A A+L + P++ LDE TS +D  + + +   +E    +GR  ++ +H 
Sbjct: 476 TLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETL-MKGRTTLIIAHR 534

Query: 150 MEECEALCTKLTIMVNGQFTCLGS 173
           +        ++ +M  G+    G+
Sbjct: 535 LATVLK-ADRIVVMDQGRIVAQGT 557

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576

>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 44.3 bits (104), Expect = 8e-05
 Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 7/96 (7%)

Query: 63  PSVLLNTIVNESLNKFAL----GHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPT 118
           P + ++ IV  +L    L     H   +    LSGG +++L  A AL   P ++ +DEP 
Sbjct: 119 PKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPC 178

Query: 119 SGMDPGARRFLWTCIE--RAVSEGRCVILTSHNMEE 152
            G+DP A   + + I+  R  SE   VI++ HN+ +
Sbjct: 179 FGLDPIASMKVESLIQSLRLRSELTMVIVS-HNLHQ 213

Length = 261

>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 44.1 bits (104), Expect = 8e-05
 Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 5/106 (4%)

Query: 67  LNTIVNESLNKFAL-GHYSDR---EVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 122
           L+ +V  SL   AL     DR       LSGG +++L  A  +   P +I +DEPTS +D
Sbjct: 118 LDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALD 177

Query: 123 PGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQF 168
           P A   +   +E        VI+T H+M++   +  +    + G+ 
Sbjct: 178 PIATHKIEELMEELKKNYTIVIVT-HSMQQARRISDRTAFFLMGEL 222

Length = 249

>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 44.1 bits (104), Expect = 8e-05
 Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 5/106 (4%)

Query: 454 LNTIVNESLNKFAL-GHYSDR---EVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 509
           L+ +V  SL   AL     DR       LSGG +++L  A  +   P +I +DEPTS +D
Sbjct: 118 LDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALD 177

Query: 510 PGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQF 555
           P A   +   +E        VI+T H+M++   +  +    + G+ 
Sbjct: 178 PIATHKIEELMEELKKNYTIVIVT-HSMQQARRISDRTAFFLMGEL 222

Length = 249

>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional

 Score = 44.2 bits (105), Expect = 9e-05
 Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 19/97 (19%)

Query: 67  LNTIVNESLNKFALGHYSDREVR--------TLSGGNKRKLSTAIALLGNPPLIFLDEPT 118
           L+  V  SL   AL      EV+         LSGG +++L  A A+   P ++ LDEPT
Sbjct: 141 LDEAVERSLRGAALWD----EVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPT 196

Query: 119 SGMDPGARRFLWTCIERAVSEGR---CVILTSHNMEE 152
           S +DP +       IE  ++E +    +++ +HNM++
Sbjct: 197 SALDPIST----LKIEELITELKSKYTIVIVTHNMQQ 229

Length = 272

>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 43.2 bits (103), Expect = 1e-04
 Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 7/145 (4%)

Query: 34  IGYCPQFDALNDRLTPREHLE--FYSRVRNVPSVLLNTIVNESLNKF-ALGHYSDREVRT 90
           I Y P+   +  RLT  E+L    Y+R            + E    F  L    ++   T
Sbjct: 80  IAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQ---ERDLEEVYELFPRLKERRNQRAGT 136

Query: 91  LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER-AVSEGRCVILTSHN 149
           LSGG ++ L+ A AL+  P L+ LDEP+ G+ P     ++  I+      G  ++L   N
Sbjct: 137 LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQN 196

Query: 150 MEECEALCTKLTIMVNGQFTCLGSA 174
                 +  +  ++ NG+    G+A
Sbjct: 197 ARFALEIADRGYVLENGRIVLSGTA 221

Length = 237

>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 4/145 (2%)

Query: 75  LNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIE 134
           L +  L   SD+ V  LS G ++ +  A  L     +I +DEPT  +       L+  I 
Sbjct: 126 LARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIR 185

Query: 135 RAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKSMALPVSGNDLG-- 192
              S+GR ++  SH ++E   +C  +T+  +GQF        L   S+   + G  L   
Sbjct: 186 ELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLTEDSLIEMMVGRKLEDQ 245

Query: 193 --RGDPVRSELSRALNDGSGSGIRN 215
             R D    E+   +++ SG G+ +
Sbjct: 246 YPRLDKAPGEVRLKVDNLSGPGVND 270

Length = 501

>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 22/58 (37%), Positives = 38/58 (65%), Gaps = 1/58 (1%)

Query: 91  LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 148
           LSGG +++L+ A ALL + P++ LDE TS +D  + R +   +ER + +GR  ++ +H
Sbjct: 470 LSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALER-LMQGRTTLVIAH 526

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571

>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 7/96 (7%)

Query: 62  VPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALL-----GNPP--LIFL 114
            P      ++N+     AL     R    LSGG  +++  A  +L      NP   L+ L
Sbjct: 97  QPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLL 156

Query: 115 DEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 150
           DEP + +D   +  L   +     +G  ++++SH++
Sbjct: 157 DEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDL 192

Length = 248

>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 43.5 bits (102), Expect = 1e-04
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 7/90 (7%)

Query: 91  LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR---RFLWTCIERAVSEGRCVILTS 147
           LSGG +++L  A AL   P ++ +DEPTS +DP +      L T +++  +    +I+ +
Sbjct: 149 LSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTT----IIIVT 204

Query: 148 HNMEECEALCTKLTIMVNGQFTCLGSATHL 177
           HNM +   +    +  + G     G    L
Sbjct: 205 HNMHQAARVSDTTSFFLVGDLVEHGPTDQL 234

Length = 252

>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D

 Score = 42.5 bits (101), Expect = 1e-04
 Identities = 17/41 (41%), Positives = 24/41 (58%)

Query: 89  RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFL 129
             LSGG +++L+ A  LL  P  +FLDE TS +D  +   L
Sbjct: 90  DVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRL 130

Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166

>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D

 Score = 42.5 bits (101), Expect = 1e-04
 Identities = 17/41 (41%), Positives = 24/41 (58%)

Query: 476 RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFL 516
             LSGG +++L+ A  LL  P  +FLDE TS +D  +   L
Sbjct: 90  DVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRL 130

Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166

>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 50/209 (23%), Positives = 88/209 (42%), Gaps = 41/209 (19%)

Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG-----AIKPTSGNAYVMNHSIR 411
           G   A++ IS    + +   L+G +G GK+T  + L             G   +   +I 
Sbjct: 17  GDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIY 76

Query: 412 DS-MDLV--RSYIG------------------YCPQFDALNDRLTPREHLEFYSRVRNVP 450
           D  +D+V  R  +G                  Y  + + + D+    E +E     R++ 
Sbjct: 77  DPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVE-----RSLR 131

Query: 451 SVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDP 510
              L   V + L++ ALG         LSGG +++L  A AL   P ++ +DEP S +DP
Sbjct: 132 HAALWDEVKDRLHESALG---------LSGGQQQRLCIARALAVEPEVLLMDEPASALDP 182

Query: 511 GARRFLWTCIERAVSEGRCVILTSHNMEE 539
            A + +   I   +     +I+ +HNM++
Sbjct: 183 IATQKIEELIHE-LKARYTIIIVTHNMQQ 210

Length = 253

>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional

 Score = 44.1 bits (104), Expect = 2e-04
 Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 6/120 (5%)

Query: 43  LNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTA 102
           LN +LT  E++E    +  +    +  I+ E +    +G +  + V+T S G K +L  A
Sbjct: 96  LNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFA 155

Query: 103 IALLGNPPLIFLDEPTSGMDPGARRFLWTCIERA---VSEGRCVILTSHNMEECEALCTK 159
           I++  NP ++ +DE  S    G + F   C+++      +G+ +   SH++ + ++ CTK
Sbjct: 156 ISVHINPDILVIDEALS---VGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTK 212

Length = 549

>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional

 Score = 44.0 bits (105), Expect = 2e-04
 Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 9/85 (10%)

Query: 70  IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR--- 126
            ++E + +  L +  DR++  LSGG  ++++ A ALL +    F DEPTS +D   R   
Sbjct: 192 KLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNV 251

Query: 127 -RFLWTCIERAVSEGRCVILTSHNM 150
            R +     R ++EG+ V++  H++
Sbjct: 252 ARLI-----RELAEGKYVLVVEHDL 271

Length = 590

>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 23/70 (32%), Positives = 37/70 (52%)

Query: 58  RVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEP 117
           ++  VP       V E+L    L  + DR V  +SGG +++++ A AL+  P ++  DEP
Sbjct: 104 KMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEP 163

Query: 118 TSGMDPGARR 127
            S +D   RR
Sbjct: 164 LSNLDANLRR 173

Length = 351

>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 91  LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 150
           LSGG +++++ A AL+ NP ++  DE TS +D  +   +   +   +  GR VI+ +H +
Sbjct: 139 LSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNM-HDICAGRTVIIIAHRL 197

The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237

>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 1/58 (1%)

Query: 91  LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 148
           LSGG K++++ A  +L NPP++ LDE TS +D    + +   +   VS GR  ++ +H
Sbjct: 400 LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALRE-VSAGRTTLVIAH 456

Length = 497

>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 44/200 (22%), Positives = 80/200 (40%), Gaps = 11/200 (5%)

Query: 366 SFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV-MNHSIRDSMDLVRSYIGYC 424
           S  +  G+ +  +G NG+GK+   + L G +   SG      +H  R S + ++  +   
Sbjct: 23  SLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDE 82

Query: 425 PQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL-----NKFALGHYSDREVRTLS 479
            Q     D L+P E        R    ++ + + + +       +F +    DR  + LS
Sbjct: 83  WQ-RNNTDMLSPGED----DTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLS 137

Query: 480 GGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEE 539
            G  RK     AL+  P L+ LDEP  G+D  +R+ L   +      G  ++L  +  +E
Sbjct: 138 TGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDE 197

Query: 540 CEALCTKLTIMVNGQFTCLG 559
                    ++ +      G
Sbjct: 198 IPDFVQFAGVLADCTLAETG 217

Length = 490

>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 1/65 (1%)

Query: 89  RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL-TS 147
            +LS G +R      AL+ +P L+ LDEP  G+DP  R+ +   ++  +SEG   +L  S
Sbjct: 400 HSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVS 459

Query: 148 HNMEE 152
           H+ E+
Sbjct: 460 HHAED 464

Length = 490

>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component

 Score = 42.1 bits (100), Expect = 2e-04
 Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 1/85 (1%)

Query: 91  LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 150
            SGG K++      LL  P L  LDEP SG+D  A R +   I +   EG+ V++ +H  
Sbjct: 105 FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQ 164

Query: 151 EECEAL-CTKLTIMVNGQFTCLGSA 174
              + +   ++ ++ +G+    G  
Sbjct: 165 RLLDYIKPDRVHVLYDGRIVKSGDK 189

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200

>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 10/82 (12%)

Query: 71  VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW 130
           V + L++ ALG         LSGG +++L  A AL   P ++ +DEP S +DP A + + 
Sbjct: 139 VKDRLHESALG---------LSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIE 189

Query: 131 TCIERAVSEGRCVILTSHNMEE 152
             I   +     +I+ +HNM++
Sbjct: 190 ELIHE-LKARYTIIIVTHNMQQ 210

Length = 253

>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 49/196 (25%), Positives = 84/196 (42%), Gaps = 32/196 (16%)

Query: 358 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDL 416
             PA+  ++F +  G+  G+ G  G+GK+T   ++      + G+    +  +    +D 
Sbjct: 327 DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDS 386

Query: 417 VRSYIGYCPQ----FD-------ALNDRLTPREHLEFYSRVRNVPSVLLN------TIVN 459
            RS +    Q    F        AL      ++ +E  +R+ +V   +L       T V 
Sbjct: 387 WRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVG 446

Query: 460 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTC 519
           E            R V  LSGG K+++S A ALL N  ++ LD+  S +D      +   
Sbjct: 447 E------------RGV-MLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHN 493

Query: 520 IERAVSEGRCVILTSH 535
           + R   EGR VI+++H
Sbjct: 494 L-RQWGEGRTVIISAH 508

Length = 569

>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 43.1 bits (101), Expect = 2e-04
 Identities = 51/204 (25%), Positives = 87/204 (42%), Gaps = 25/204 (12%)

Query: 361 AVNQISFGVGRGECFGLLGLNGAGKTT---TFKMLTGAIKPT--SGNAYVMNHSIRDS-- 413
           A+  IS  +        +G +G GK+T    F  +   I  T   G   +   +I D   
Sbjct: 18  ALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGV 77

Query: 414 -MDLVRSYIGYCPQFDALNDRLTP-----REHLEFYSRVRNVP-SVLLNTIVNESLNKFA 466
            +D +R  +G   Q      R  P      E++ +  RV  V  +  +   V E+L   A
Sbjct: 78  QVDELRKNVGMVFQ------RPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAA 131

Query: 467 LGHYSDREVR----TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER 522
           L      +++     LSGG +++L  A A+  +P ++ +DEP S +DP +   +   I  
Sbjct: 132 LWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHE 191

Query: 523 AVSEGRCVILTSHNMEECEALCTK 546
              +   VI+T HNM++   +  K
Sbjct: 192 LKKDYTIVIVT-HNMQQAARVSDK 214

Length = 250

>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 43.1 bits (101), Expect = 2e-04
 Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 1/69 (1%)

Query: 91  LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 150
           LSGG +++L  A A+  +P ++ +DEP S +DP +   +   I     +   VI+T HNM
Sbjct: 147 LSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVT-HNM 205

Query: 151 EECEALCTK 159
           ++   +  K
Sbjct: 206 QQAARVSDK 214

Length = 250

>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 51/216 (23%), Positives = 87/216 (40%), Gaps = 33/216 (15%)

Query: 358 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP----TSGN----------A 403
            +P V+ +S  + RG    L+G +G+GK+ T     G +      T+G            
Sbjct: 15  AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC 74

Query: 404 YVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLN 463
            +    I   M   RS         A N   T   H          P+   +  +  +L 
Sbjct: 75  ALRGRKIATIMQNPRS---------AFNPLHTMHTHARETCLALGKPAD--DATLTAALE 123

Query: 464 KFALGHYSDREVRT----LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR-RFLWT 518
              L + + R ++     +SGG  +++  A+ALL   P I  DEPT+ +D  A+ R L  
Sbjct: 124 AVGLEN-AARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARIL-D 181

Query: 519 CIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNG 553
            +E  V +    ++L +H+M     L   + +M +G
Sbjct: 182 LLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHG 217

Length = 254

>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional

 Score = 43.4 bits (103), Expect = 3e-04
 Identities = 33/109 (30%), Positives = 58/109 (53%), Gaps = 13/109 (11%)

Query: 85  DREVRTLSGGNKRKLSTAIALLG-----NPPLIFLDEPTSGMDPGARRFLWTCIERAVSE 139
           ++ +  LSGGN++K     A+LG     +  +I LDEPT G+D GA+  ++  I    ++
Sbjct: 391 EQLIMNLSGGNQQK-----AILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQ 445

Query: 140 GRCVILTSHNMEECEALCTKLTIMVNGQFT-CL--GSATHLKSKSMALP 185
           G  V+  S ++ E   +  ++ +M  G+    L    AT  ++ S+ALP
Sbjct: 446 GVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQATERQALSLALP 494

Length = 501

>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE

 Score = 42.5 bits (100), Expect = 3e-04
 Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 9/88 (10%)

Query: 85  DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE----- 139
           D+  R LSGG  ++++ A AL   P LI LDE  S +D      L   I   + +     
Sbjct: 145 DKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLD----MVLQAVILELLRKLQQAF 200

Query: 140 GRCVILTSHNMEECEALCTKLTIMVNGQ 167
           G   +  +H++   ++ C ++ +M  GQ
Sbjct: 201 GTAYLFITHDLRLVQSFCQRVAVMDKGQ 228

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265

>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein

 Score = 43.3 bits (102), Expect = 3e-04
 Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 8/98 (8%)

Query: 86  REVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL 145
           R V    GG ++ +  A AL     L+ LDEP+S +       L   I    + G   + 
Sbjct: 137 RPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVY 196

Query: 146 TSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKSMA 183
            SH + E +A+C  + ++ +GQ        H+ +K M+
Sbjct: 197 ISHKLNEVKAVCDTICVIRDGQ--------HVATKDMS 226

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500

>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 42.7 bits (100), Expect = 3e-04
 Identities = 55/230 (23%), Positives = 94/230 (40%), Gaps = 54/230 (23%)

Query: 340 GDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT 399
             +++  +L KI+    G   AV      + + E  G +G +G GK+T  + L       
Sbjct: 5   APIVMDCKLDKIFY---GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNR----- 56

Query: 400 SGNAYVMNHSIRDSMDLVRSY-----IGYCPQ--FDALNDRLTPREHLEFYSRVRN--VP 450
                 MN       DLV+ +     + +  Q  +    D +  R ++    +  N    
Sbjct: 57  ------MN-------DLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPFSM 103

Query: 451 SVLLNTIVNESLNKFALGHYSDR------------EVR--------TLSGGNKRKLSTAI 490
           S+  N      LN++  G   DR            EV+        +LSGG +++L  A 
Sbjct: 104 SIFDNVAFGLRLNRYK-GDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIAR 162

Query: 491 ALLGNPPLIFLDEPTSGMDPGA-RRFLWTCIERAVSEGRCVILTSHNMEE 539
           A+   P ++ LDEP S +DP A RR     +E  + +   + L +HNM++
Sbjct: 163 AIATEPEVLLLDEPCSALDPIATRRVEELMVE--LKKDYTIALVTHNMQQ 210

Length = 261

>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 42.3 bits (99), Expect = 3e-04
 Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 3/64 (4%)

Query: 90  TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGA-RRFLWTCIERAVSEGRCVILTSH 148
           +LSGG +++L  A A+   P ++ LDEP S +DP A RR     +E  + +   + L +H
Sbjct: 149 SLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVE--LKKDYTIALVTH 206

Query: 149 NMEE 152
           NM++
Sbjct: 207 NMQQ 210

Length = 261

>gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 1/78 (1%)

Query: 91  LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERA-VSEGRCVILTSHN 149
           L+ G  +K+  AIAL   P L+  DEPT+ M+P  +  ++  + R   +    ++L SH+
Sbjct: 159 LTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHD 218

Query: 150 MEECEALCTKLTIMVNGQ 167
           ++       K+ ++  GQ
Sbjct: 219 LQMISQWADKINVLYCGQ 236

Length = 330

>gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 1/78 (1%)

Query: 478 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERA-VSEGRCVILTSHN 536
           L+ G  +K+  AIAL   P L+  DEPT+ M+P  +  ++  + R   +    ++L SH+
Sbjct: 159 LTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHD 218

Query: 537 MEECEALCTKLTIMVNGQ 554
           ++       K+ ++  GQ
Sbjct: 219 LQMISQWADKINVLYCGQ 236

Length = 330

>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 21/74 (28%), Positives = 40/74 (54%)

Query: 90  TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN 149
           T SGG +++++ A   + + P++ LDEPT+ +D   R  +   I  A + G  ++   H+
Sbjct: 152 TFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHD 211

Query: 150 MEECEALCTKLTIM 163
            E  EA+  +L  +
Sbjct: 212 EEVREAVADRLLDV 225

Length = 235

>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional

 Score = 41.8 bits (99), Expect = 4e-04
 Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 1/80 (1%)

Query: 89  RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTS 147
            T SGG +++L  A  L+ +P L+F+DEPT G+D   +  L   +   V E G  V++ +
Sbjct: 150 TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVT 209

Query: 148 HNMEECEALCTKLTIMVNGQ 167
           H++     L  +L +M  G+
Sbjct: 210 HDLAVARLLAHRLLVMKQGR 229

Length = 258

>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 1/68 (1%)

Query: 83  YSDREVRT-LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGR 141
           + +R V    SGG K++       L  P L  LDE  SG+D  A + +   I R     R
Sbjct: 136 FLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDR 195

Query: 142 CVILTSHN 149
             ++ +H 
Sbjct: 196 SFLIITHY 203

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243

>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 42.3 bits (99), Expect = 4e-04
 Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 5/106 (4%)

Query: 51  EHLEFYSRVRNVPSVLLNTIVNESLNKFAL-GHYSDR---EVRTLSGGNKRKLSTAIALL 106
           +++ +  R+       L+ +V  +L   AL    SDR      +LSGG +++L  A  L 
Sbjct: 111 DNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLA 170

Query: 107 GNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEE 152
             P +I  DEPTS +DP +   +   I     +   VI+T HNM++
Sbjct: 171 VKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVT-HNMQQ 215

Length = 258

>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional

 Score = 42.1 bits (99), Expect = 4e-04
 Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 3/77 (3%)

Query: 91  LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDP-GARRFLWTCIERAVSEGRCVILTSHN 149
           LSGG ++++  A  L  +P +I LDEPTS +DP  A +   T +   + +   ++L + +
Sbjct: 149 LSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLG--LKDDYTMLLVTRS 206

Query: 150 MEECEALCTKLTIMVNG 166
           M++   +  +    ++G
Sbjct: 207 MQQASRISDRTGFFLDG 223

Length = 252

>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein

 Score = 42.8 bits (101), Expect = 4e-04
 Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 4/87 (4%)

Query: 91  LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 150
           LSGG K++++ A AL+  P ++ LDE TS +D    + L     RA    R V+L +H +
Sbjct: 618 LSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSRA---SRTVLLIAHRL 674

Query: 151 EECEALCTKLTIMVNGQFTCLGSATHL 177
              E    ++ ++  G    +G+   L
Sbjct: 675 STVER-ADQILVLKKGSVVEMGTHKQL 700

[Transport and binding proteins, Other]. Length = 711

>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 42.0 bits (98), Expect = 4e-04
 Identities = 44/185 (23%), Positives = 80/185 (43%), Gaps = 31/185 (16%)

Query: 376 GLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLT 435
            ++G +G GK+T  + L       SG A +    + D+ ++      Y P  D +N  L 
Sbjct: 34  AIIGPSGCGKSTLLRALNRMNDIVSG-ARLEGAVLLDNENI------YSPNLDVVN--LR 84

Query: 436 PREHLEF----------YSRVRNVPSVL-------LNTIVNESLNKFALGHYSDREVR-- 476
            R  + F          +  V   P +L       L+ +V +SL + AL       +   
Sbjct: 85  KRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKS 144

Query: 477 --TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTS 534
              LSGG +++L  A  L   P +I +DEP S +DP +   +   ++  + +   + + +
Sbjct: 145 GLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQE-LKQNYTIAIVT 203

Query: 535 HNMEE 539
           HNM++
Sbjct: 204 HNMQQ 208

Length = 251

>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 42.1 bits (99), Expect = 4e-04
 Identities = 46/174 (26%), Positives = 69/174 (39%), Gaps = 26/174 (14%)

Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTT---TFKMLT--GAIKPTSGNAYVMNHSI- 410
           G+   +  +   + +   F L+G +G GK+T   TF  L          G   +   +I 
Sbjct: 15  GSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIY 74

Query: 411 RDSMDL--VRSYIGYCPQFDALNDRLTPREHLEFYSRVR--------NVPSVLLNTIVNE 460
              +D   VR  +G   Q+        P  HL  Y  V               L+  V  
Sbjct: 75  SPDVDPIEVRREVGMVFQYP------NPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEW 128

Query: 461 SLNKFAL-GHYSDR---EVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDP 510
           +L K AL     DR       LSGG +++L  A AL   P ++ +DEPT+ +DP
Sbjct: 129 ALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDP 182

Length = 253

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 42.7 bits (101), Expect = 5e-04
 Identities = 25/81 (30%), Positives = 43/81 (53%)

Query: 70  IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFL 129
             +E + +  L +  DR+V  LSGG  ++++ A ALL +  + F DEP+S +D   R   
Sbjct: 193 KFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNA 252

Query: 130 WTCIERAVSEGRCVILTSHNM 150
              I     +G+ VI+  H++
Sbjct: 253 ARVIRELAEDGKYVIVVEHDL 273

Length = 591

>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional

 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 1/78 (1%)

Query: 91  LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHN 149
           LSGG K++++ A AL+  P L+ LDEP   +D   R  +   IE    + G  V+L +H+
Sbjct: 134 LSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHD 193

Query: 150 MEECEALCTKLTIMVNGQ 167
           + E  A+  ++ ++  G+
Sbjct: 194 VSEAVAMADRVLLIEEGK 211

Length = 257

>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein

 Score = 42.6 bits (101), Expect = 5e-04
 Identities = 41/165 (24%), Positives = 72/165 (43%), Gaps = 21/165 (12%)

Query: 359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLV 417
            P +   S  +  G+   L+G +G+GK+T  K++ G  +P SG          +   +++
Sbjct: 492 PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVL 551

Query: 418 RSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVL--------LNTIVNESLNKFALGH 469
            + +    Q D      T R++L  +        ++         + I +        G 
Sbjct: 552 ANSVAMVDQ-DIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRP------GG 604

Query: 470 YSDREV----RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDP 510
           Y D E+      LSGG +++L  A AL+ NP ++ LDE TS +DP
Sbjct: 605 Y-DAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDP 648

This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710

>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional

 Score = 41.7 bits (98), Expect = 5e-04
 Identities = 46/200 (23%), Positives = 86/200 (43%), Gaps = 25/200 (12%)

Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTT---TFKMLTGAIKP--TSGNAYVMNHSIR 411
           G+  AV  +   + + +    +G +G GK+T    F  L   I      G       ++ 
Sbjct: 21  GSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLY 80

Query: 412 DS-MD--LVRSYIGYCPQFDALNDRLTP-----REHLEFYSRVRNVPSVLLNTIVNESLN 463
              +D   VR  IG   Q      +  P      +++ + +R+ N     ++ +V  SL 
Sbjct: 81  APDVDPVEVRRRIGMVFQ------KPNPFPKSIYDNIAYGARI-NGYKGDMDELVERSLR 133

Query: 464 KFALGHYSDREVRT----LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTC 519
           + AL      +++     LSGG +++L  A A+   P +I +DEP S +DP +   +   
Sbjct: 134 QAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEEL 193

Query: 520 IERAVSEGRCVILTSHNMEE 539
           +     +   +I+T HNM++
Sbjct: 194 MHELKEQYTIIIVT-HNMQQ 212

Length = 264

>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

 Score = 41.5 bits (98), Expect = 6e-04
 Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 1/77 (1%)

Query: 75  LNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIE 134
           L +  L  +++R+   L+ G +R+L  A  ++  P ++ LDEP +G++P   + L   I 
Sbjct: 138 LERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIA 197

Query: 135 RAVSE-GRCVILTSHNM 150
              +E    V+L  H+M
Sbjct: 198 ELRNEHNVTVLLIEHDM 214

Length = 255

>gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional

 Score = 41.3 bits (97), Expect = 6e-04
 Identities = 30/133 (22%), Positives = 59/133 (44%), Gaps = 6/133 (4%)

Query: 43  LNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTA 102
           L+ +LT  E++EF           +  +  + +    LG +  + V+  S G + KL  +
Sbjct: 96  LSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFS 155

Query: 103 IALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAV---SEGRCVILTSHNMEECEALCTK 159
           I +  NP ++ +DE  S    G + F   C+++      + + +   SHN+ +    CTK
Sbjct: 156 INITVNPDILVIDEALS---VGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTK 212

Query: 160 LTIMVNGQFTCLG 172
           +  +  G+    G
Sbjct: 213 IAWIEGGKLKDYG 225

Length = 264

>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional

 Score = 42.0 bits (99), Expect = 6e-04
 Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 7/139 (5%)

Query: 34  IGYCPQFDALNDRLTPREHLEFYSRV---RNVPSV-LLNTIVNESLNKFALGHYSDREVR 89
           +G+  Q  AL   +T  +++ F   V   R  P+   +   V + L    L H +DR   
Sbjct: 76  VGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPA 135

Query: 90  TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGR--CVILTS 147
            LSGG K++++ A AL   P ++ LDEP   +D   R+ L   + +   E +   V +T 
Sbjct: 136 QLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVT- 194

Query: 148 HNMEECEALCTKLTIMVNG 166
           H+ EE   +  ++ +M  G
Sbjct: 195 HDQEEAMEVADRVVVMSQG 213

Length = 353

>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins

 Score = 41.4 bits (98), Expect = 6e-04
 Identities = 23/59 (38%), Positives = 38/59 (64%), Gaps = 1/59 (1%)

Query: 90  TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 148
            LSGG K++++ A ALL NP ++ LDE TS +D  + + +   ++RA  +GR  I+ +H
Sbjct: 139 QLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRA-MKGRTTIVIAH 196

MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238

>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional

 Score = 42.1 bits (99), Expect = 6e-04
 Identities = 53/212 (25%), Positives = 91/212 (42%), Gaps = 17/212 (8%)

Query: 361 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD----SMDL 416
           AV ++SF +  GE   L+G +G+GK+TT + L   ++   G        I       +  
Sbjct: 339 AVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQA 398

Query: 417 VRSYIGYCPQ--FDALNDRLTPREHLEFYSRVRNVPSVLLN-----TIVNESLNKFAL-G 468
           +R  I +  Q  + +L+ R T  + +    RV      LL        V   L +  L  
Sbjct: 399 LRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHG----LLPGKAAAARVAWLLERVGLLP 454

Query: 469 HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR-RFLWTCIERAVSEG 527
            ++ R     SGG ++++  A AL  NP +I  DE  S +D   R + +   ++     G
Sbjct: 455 EHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFG 514

Query: 528 RCVILTSHNMEECEALCTKLTIMVNGQFTCLG 559
              +  SH+M   E +  ++ +M  GQ   +G
Sbjct: 515 IAYLFISHDMAVVERISHRVAVMYLGQIVEIG 546

Length = 623

>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional

 Score = 41.7 bits (98), Expect = 6e-04
 Identities = 56/228 (24%), Positives = 97/228 (42%), Gaps = 35/228 (15%)

Query: 355 SKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR-DS 413
           S G   AV+++S  +  GE  GL+G +G+GK+   K + G    T  N  V    +R D 
Sbjct: 16  SDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGV---TKDNWRVTADRMRFDD 72

Query: 414 MDLV-------RSYIGYCPQ--FDALNDRLTPREHLE---------------FYSRV--R 447
           +DL+       R  +G+     F      L P E +                ++ R   R
Sbjct: 73  IDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWR 132

Query: 448 NVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSG 507
              ++ L   V    +K A+  +       L+ G  +K+  AIAL   P L+  DEPT+ 
Sbjct: 133 KRRAIELLHRVGIKDHKDAMRSFP----YELTEGECQKVMIAIALANQPRLLIADEPTNA 188

Query: 508 MDPGARRFLWTCIERA-VSEGRCVILTSHNMEECEALCTKLTIMVNGQ 554
           M+P  +  ++  + R   +    ++L SH+++       K+ ++  GQ
Sbjct: 189 MEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQ 236

Length = 330

>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 41.7 bits (98), Expect = 6e-04
 Identities = 54/212 (25%), Positives = 95/212 (44%), Gaps = 45/212 (21%)

Query: 355 SKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR--- 411
           S GT  AV  +   + RG+   L+G +G GK+T  + L         N  +   S++   
Sbjct: 22  SYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRM------NDLIEGCSLKGRV 75

Query: 412 --DSMDLVRSYIGYCPQFDALNDRLT-----------PR---EHLEFYSRVRNVPSVLLN 455
             D  DL      Y P+ D +  R             P+   E++ F +R+ N  +  ++
Sbjct: 76  LFDGTDL------YDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARI-NGYTGDMD 128

Query: 456 TIVNESLNKFALGHYSDREVR----TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPG 511
            +V  SL K A+      ++     +LSGG +++L  A  +   P +I +DEP S +DP 
Sbjct: 129 ELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDP- 187

Query: 512 ARRFLWTC-IERAVSEGR---CVILTSHNMEE 539
               + T  IE  + E +    +++ +HNM++
Sbjct: 188 ----ISTLKIEETMHELKKNFTIVIVTHNMQQ 215

Length = 269

>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional

 Score = 41.3 bits (97), Expect = 7e-04
 Identities = 40/135 (29%), Positives = 59/135 (43%), Gaps = 12/135 (8%)

Query: 50  REHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRK--LSTAIALLG 107
           REH         +P+ LL++ V   L    L   +      LSGG  R+  L+ AIAL  
Sbjct: 110 REH-------TQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIAL-- 160

Query: 108 NPPLIFLDEPTSGMDPGARRFLWTCI-ERAVSEGRCVILTSHNMEECEALCTKLTIMVNG 166
            P LI  DEP  G DP     L   I E   + G   ++ SH++ E  ++     I+ + 
Sbjct: 161 EPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADK 220

Query: 167 QFTCLGSATHLKSKS 181
           +    GSA  L++  
Sbjct: 221 KIVAHGSAQALQANP 235

Length = 269

>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional

 Score = 40.8 bits (96), Expect = 9e-04
 Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 3/78 (3%)

Query: 91  LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR-RFLWTCIERAVSE-GRCVILTSH 148
           +SGG  +++  A+ALL   P I  DEPT+ +D  A+ R L   +E  V +    ++L +H
Sbjct: 141 MSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARIL-DLLESIVQKRALGMLLVTH 199

Query: 149 NMEECEALCTKLTIMVNG 166
           +M     L   + +M +G
Sbjct: 200 DMGVVARLADDVAVMSHG 217

Length = 254

>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional

 Score = 41.4 bits (98), Expect = 9e-04
 Identities = 47/167 (28%), Positives = 77/167 (46%), Gaps = 18/167 (10%)

Query: 350 KIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY----V 405
           K Y     T   +  I   V  GE   L+G +G GK+T  +M+ G  + TSG  +    V
Sbjct: 11  KSYDG--KT-QVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRV 67

Query: 406 MNH---SIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL 462
           +N    + RD        I    Q  AL   ++ RE++ +  ++R +P   +   V E+ 
Sbjct: 68  VNELEPADRD--------IAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAA 119

Query: 463 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 509
               L    DR+ R LSGG +++++   A++  P +   DEP S +D
Sbjct: 120 RILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD 166

Length = 356

>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional

 Score = 41.3 bits (98), Expect = 0.001
 Identities = 16/51 (31%), Positives = 28/51 (54%)

Query: 72  NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 122
           +E +    L    D+ V+ LSGG  ++++ A  L  +  L  LDEP++ +D
Sbjct: 435 SEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLD 485

Length = 590

>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family

 Score = 41.1 bits (97), Expect = 0.001
 Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 7/66 (10%)

Query: 85  DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE--GRC 142
           D +V  LSGG +R+++    LL  P ++ LDEPT+ +D  A    W  +E+ + E  G  
Sbjct: 156 DADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLD--AESVAW--LEQHLQEYPG-T 210

Query: 143 VILTSH 148
           V+  +H
Sbjct: 211 VVAVTH 216

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552

>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 24/106 (22%), Positives = 44/106 (41%)

Query: 77  KFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERA 136
           +F +    DR  + LS G  RK     AL+  P L+ LDEP  G+D  +R+ L   +   
Sbjct: 122 QFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASL 181

Query: 137 VSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKSM 182
              G  ++L  +  +E         ++ +      G    +  +++
Sbjct: 182 HQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQAL 227

Length = 490

>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 1/87 (1%)

Query: 92  SGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCV-ILTSHNM 150
           SGG +++++ A AL+  P LI LDEPTS +D   +  +   ++    + +   +  SH++
Sbjct: 427 SGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDL 486

Query: 151 EECEALCTKLTIMVNGQFTCLGSATHL 177
               ALC ++ ++  G+    G    +
Sbjct: 487 HVVRALCHQVIVLRQGEVVEQGDCERV 513

Length = 529

>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 28/104 (26%), Positives = 51/104 (49%)

Query: 73  ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTC 132
           + L +  L  Y+DR    LSGG +++++ A AL+  P ++  DEPT+ +DP     + + 
Sbjct: 124 KLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSI 183

Query: 133 IERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATH 176
           I      G   ++ +H +E      +++  M NG     G A+ 
Sbjct: 184 IRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC 227

Length = 242

>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 1/79 (1%)

Query: 73  ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTC 132
           E L+   L   +D     LSGG +++++ A AL   P ++  DE TS +DP     +   
Sbjct: 129 ELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNV 188

Query: 133 IERAVSEGR-CVILTSHNM 150
           I R  SE    ++L +H M
Sbjct: 189 IRRLASEHDLTMLLVTHEM 207

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252

>gnl|CDD|213246 cd03279, ABC_sbcCD, ATP-binding cassette domain of sbcCD

 Score = 40.3 bits (95), Expect = 0.001
 Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 10/88 (11%)

Query: 86  REVRTLSGGNKRKLSTAIAL--------LGNPPL--IFLDEPTSGMDPGARRFLWTCIER 135
           R V TLSGG     S ++AL         G   L  +F+DE    +DP A   + T +E 
Sbjct: 119 RPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALEL 178

Query: 136 AVSEGRCVILTSHNMEECEALCTKLTIM 163
             +E R V + SH  E  E +  +L ++
Sbjct: 179 IRTENRMVGVISHVEELKERIPQRLEVI 206

SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. Length = 213

>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 40.4 bits (94), Expect = 0.001
 Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 5/90 (5%)

Query: 67  LNTIVNESLNKFALGHYSDREVR----TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 122
           L+ +V +SL + AL       +      LSGG +++L  A  L   P +I +DEP S +D
Sbjct: 120 LDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALD 179

Query: 123 PGARRFLWTCIERAVSEGRCVILTSHNMEE 152
           P +   +   ++  + +   + + +HNM++
Sbjct: 180 PVSTMRIEELMQE-LKQNYTIAIVTHNMQQ 208

Length = 251

>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 5/90 (5%)

Query: 67  LNTIVNESLNKFALGHYSDREVRT----LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 122
           ++ +V  SL + AL      +++     LSGG +++L  A A+   P +I +DEP S +D
Sbjct: 124 MDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALD 183

Query: 123 PGARRFLWTCIERAVSEGRCVILTSHNMEE 152
           P +   +   +     +   +I+T HNM++
Sbjct: 184 PISTLRIEELMHELKEQYTIIIVT-HNMQQ 212

Length = 264

>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional

 Score = 40.9 bits (96), Expect = 0.001
 Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 6/118 (5%)

Query: 91  LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERA-VSEGRCVILTSHN 149
           L+ G  +K+  AIAL   P L+  DEPT+ M+P  +  ++  + R   +    ++L SH+
Sbjct: 159 LTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHD 218

Query: 150 MEECEALCTKLTIMVNGQFTCLGSATHLKSK-----SMALPVSGNDLGRGDPVRSELS 202
           ++       K+ ++  GQ      +  L +      + AL  +  D G   P +S L+
Sbjct: 219 LQMLSQWADKINVLYCGQTVETAPSKELVTTPHHPYTQALIRAIPDFGSAMPHKSRLN 276

Length = 330

>gnl|CDD|222219 pfam13558, SbcCD_C, Putative exonuclease SbcCD, C subunit

 Score = 37.9 bits (89), Expect = 0.001
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 12/56 (21%)

Query: 86  REVRTLSGGNKRKL-STAIAL--------LGNPP---LIFLDEPTSGMDPGARRFL 129
           R+  TLSGG K+ L   A+A             P   LIFLDE  + +D    R L
Sbjct: 18  RDSGTLSGGEKQVLAYLALAAALAAQYGSNRGGPAPRLIFLDEAFAKLDEENIRSL 73

Possible exonuclease SbcCD, C subunit, on AAA proteins. Length = 79

>gnl|CDD|222219 pfam13558, SbcCD_C, Putative exonuclease SbcCD, C subunit

 Score = 37.9 bits (89), Expect = 0.001
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 12/56 (21%)

Query: 473 REVRTLSGGNKRKL-STAIAL--------LGNPP---LIFLDEPTSGMDPGARRFL 516
           R+  TLSGG K+ L   A+A             P   LIFLDE  + +D    R L
Sbjct: 18  RDSGTLSGGEKQVLAYLALAAALAAQYGSNRGGPAPRLIFLDEAFAKLDEENIRSL 73

Possible exonuclease SbcCD, C subunit, on AAA proteins. Length = 79

>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP)

 Score = 41.5 bits (97), Expect = 0.001
 Identities = 57/255 (22%), Positives = 111/255 (43%), Gaps = 36/255 (14%)

Query: 321 LEEDDVRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGL 380
           LE D +  ER  ++ G   G+ + V      +A  +   P +N I+F +  G    ++G 
Sbjct: 619 LEPDSI--ERRTIKPG--EGNSITVHNATFTWA--RDLPPTLNGITFSIPEGALVAVVGQ 672

Query: 381 NGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDAL-NDRLTPREH 439
            G GK++    L   +    G+ ++            +  + Y PQ   + ND L  RE+
Sbjct: 673 VGCGKSSLLSALLAEMDKVEGHVHM------------KGSVAYVPQQAWIQNDSL--REN 718

Query: 440 LEF--------YSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIA 491
           + F        Y +V    ++L +  +  S ++  +G   ++ V  LSGG K+++S A A
Sbjct: 719 ILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIG---EKGV-NLSGGQKQRVSLARA 774

Query: 492 LLGNPPLIFLDEPTSGMDPGARRFLWTCI--ERAVSEGRCVILTSHNMEECEALCTKLTI 549
           +  N  +   D+P S +D    + ++  +     V + +  IL +H +     +   + +
Sbjct: 775 VYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQV-DVIIV 833

Query: 550 MVNGQFTCLGSATHL 564
           M  G+ + +GS   L
Sbjct: 834 MSGGKISEMGSYQEL 848

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522

>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 6/89 (6%)

Query: 80  LGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPG-ARRFLWTCIERAVS 138
           L HY       LSGG +++++ A A  G P ++F DEPT  +D     +           
Sbjct: 140 LTHYP----AQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRE 195

Query: 139 EGRCVILTSHNMEECEALCTKLTIMVNGQ 167
            G  ++L +H+  +  A C +   + +G+
Sbjct: 196 RGTTLVLVTHD-PQLAARCDRQLRLRSGR 223

Length = 228

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 40.7 bits (96), Expect = 0.002
 Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 6/90 (6%)

Query: 34  IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNT-IVNESLNKFALGHYSDREVRTLS 92
           + Y PQ+ + +   T  + L        + S   ++    E +    L    +R V  LS
Sbjct: 403 VSYKPQYISPDYDGTVEDLLR-----SAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELS 457

Query: 93  GGNKRKLSTAIALLGNPPLIFLDEPTSGMD 122
           GG  ++++ A AL     L  LDEP++ +D
Sbjct: 458 GGELQRVAIAAALSREADLYLLDEPSAYLD 487

Length = 591

>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed

 Score = 40.7 bits (96), Expect = 0.002
 Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 2/56 (3%)

Query: 67  LNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 122
           L   +NE L +  LG   D  + +LSGG  RK +   AL+ NP ++ LDEPT+ +D
Sbjct: 135 LENRINEVLAQ--LGLDPDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLD 188

Length = 635

>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 11/67 (16%)

Query: 91  LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDP--GARRFLWTCIERAVSEGR---CVIL 145
           LSGG +++L  A  +   P ++ LDEP S +DP    R      IE  ++E +    V++
Sbjct: 157 LSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGR------IEELITELKQDYTVVI 210

Query: 146 TSHNMEE 152
            +HNM++
Sbjct: 211 VTHNMQQ 217

Length = 260

>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 11/67 (16%)

Query: 478 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDP--GARRFLWTCIERAVSEGR---CVIL 532
           LSGG +++L  A  +   P ++ LDEP S +DP    R      IE  ++E +    V++
Sbjct: 157 LSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGR------IEELITELKQDYTVVI 210

Query: 533 TSHNMEE 539
            +HNM++
Sbjct: 211 VTHNMQQ 217

Length = 260

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 41.2 bits (97), Expect = 0.002
 Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 6/73 (8%)

Query: 85  DREVRTLSGGNKRKLSTAIAL------LGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS 138
           +R +  LSGG +  L  A  L       GN PL+ LDEPT  +D   RR L   +ER + 
Sbjct: 783 ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLR 842

Query: 139 EGRCVILTSHNME 151
           +   VI+ SH+ E
Sbjct: 843 KIPQVIIVSHDEE 855

Length = 880

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 41.2 bits (97), Expect = 0.002
 Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 6/73 (8%)

Query: 472 DREVRTLSGGNKRKLSTAIAL------LGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS 525
           +R +  LSGG +  L  A  L       GN PL+ LDEPT  +D   RR L   +ER + 
Sbjct: 783 ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLR 842

Query: 526 EGRCVILTSHNME 538
           +   VI+ SH+ E
Sbjct: 843 KIPQVIIVSHDEE 855

Length = 880

>gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C

 Score = 40.2 bits (94), Expect = 0.002
 Identities = 57/219 (26%), Positives = 100/219 (45%), Gaps = 37/219 (16%)

Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
           + VK L   Y  ++G    +  ISF +  G+  GLLG  G+GK+T        +  T G+
Sbjct: 3   MTVKDLTAKY--TEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGD 59

Query: 403 AYVMNHSIRDSMDLV--RSYIGYCPQ----FDALNDRLTPREHLEFYSR------VRNVP 450
             +   S  +S+ L   R   G  PQ    F       T R++L+ Y +       +   
Sbjct: 60  IQIDGVSW-NSVPLQKWRKAFGVIPQKVFIFSG-----TFRKNLDPYGKWSDEEIWKVAE 113

Query: 451 SVLLNTIVNESLNK--FAL--GHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTS 506
            V L +++ +   +  F L  G         LS G+K+ +  A ++L    ++ LDEP++
Sbjct: 114 EVGLKSVIEQFPGQLDFVLVDGGC------VLSHGHKQLMCLARSVLSKAKILLLDEPSA 167

Query: 507 GMDPGARRFLWTCIERAVSEGRC-VILTSHNME---ECE 541
            +DP   + +   +++A ++  C VIL+ H +E   EC+
Sbjct: 168 HLDPITYQVIRKTLKQAFAD--CTVILSEHRIEAMLECQ 204

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score = 40.8 bits (95), Expect = 0.002
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 91  LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAV-SEGRCVILTSHN 149
           LSGG K+++S A A++ NP ++ LDE TS +D  +   +   I     +E R  I+ +H 
Sbjct: 580 LSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHR 639

Query: 150 M 150
           +
Sbjct: 640 L 640

Length = 1466

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score = 40.8 bits (95), Expect = 0.002
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 478 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAV-SEGRCVILTSHN 536
           LSGG K+++S A A++ NP ++ LDE TS +D  +   +   I     +E R  I+ +H 
Sbjct: 580 LSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHR 639

Query: 537 M 537
           +
Sbjct: 640 L 640

Length = 1466

>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional

 Score = 39.2 bits (92), Expect = 0.003
 Identities = 23/82 (28%), Positives = 48/82 (58%), Gaps = 9/82 (10%)

Query: 91  LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT-----CIERAVSEGRCVIL 145
           LSGG +++++ A  L+   P++ LDEP S +DP  R+ + T     C ER ++    +++
Sbjct: 130 LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLT----LLM 185

Query: 146 TSHNMEECEALCTKLTIMVNGQ 167
            SH++E+   +  +  ++ +G+
Sbjct: 186 VSHSLEDAARIAPRSLVVADGR 207

Length = 232

>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 40.2 bits (95), Expect = 0.003
 Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 6/107 (5%)

Query: 64  SVLLNTIVNESLNKFALG-HY--SDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSG 120
             L N  V+E L     G      D+    LS G  ++L+ A ALL    L+ LDEPT+ 
Sbjct: 457 QALENAWVSEFLPLLPQGLDTPIGDQAAG-LSVGQAQRLALARALLQPCQLLLLDEPTAS 515

Query: 121 MDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 167
           +D  + + +   +  A S  +  ++ +H +E+      ++ +M +GQ
Sbjct: 516 LDAHSEQLVMQALNAA-SRRQTTLMVTHQLEDLAQ-WDQIWVMQDGQ 560

Length = 588

>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein

 Score = 39.9 bits (94), Expect = 0.003
 Identities = 17/35 (48%), Positives = 24/35 (68%)

Query: 89  RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDP 123
             LSGG +++L  A AL+ NP ++ LDE TS +DP
Sbjct: 614 ANLSGGQRQRLEIARALVRNPSILILDEATSALDP 648

This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710

>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit

 Score = 40.4 bits (95), Expect = 0.003
 Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 14/117 (11%)

Query: 40  FDALNDRLTPREHLEFYSRVRNVPSVL--LNTIVNESLNKFALGHYSDREVRTLSGGNKR 97
            D L+  +T  E  EF+     VPS+   L T+ +  L    LG    +   TLSGG  +
Sbjct: 786 ADVLD--MTVEEAYEFFE---AVPSISRKLQTLCDVGLGYIRLG----QPATTLSGGEAQ 836

Query: 98  KLSTAIALLG---NPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 151
           ++  A  L        L  LDEPT+G+     + L   ++R V +G  V++  HN++
Sbjct: 837 RIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDKGNTVVVIEHNLD 893

This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925

>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit

 Score = 40.4 bits (95), Expect = 0.003
 Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 14/117 (11%)

Query: 427 FDALNDRLTPREHLEFYSRVRNVPSVL--LNTIVNESLNKFALGHYSDREVRTLSGGNKR 484
            D L+  +T  E  EF+     VPS+   L T+ +  L    LG    +   TLSGG  +
Sbjct: 786 ADVLD--MTVEEAYEFFE---AVPSISRKLQTLCDVGLGYIRLG----QPATTLSGGEAQ 836

Query: 485 KLSTAIALLG---NPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 538
           ++  A  L        L  LDEPT+G+     + L   ++R V +G  V++  HN++
Sbjct: 837 RIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDKGNTVVVIEHNLD 893

This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925

>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional

 Score = 38.6 bits (90), Expect = 0.004
 Identities = 19/50 (38%), Positives = 29/50 (58%)

Query: 73  ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 122
           E L    L H ++     LSGG +++++ A AL+ NP L+  DEPT  +D
Sbjct: 128 EMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLD 177

Length = 233

>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

 Score = 39.2 bits (92), Expect = 0.004
 Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 3/79 (3%)

Query: 91  LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE--GRCVILTSH 148
           LSGG +++++ A AL  +P L+ LDEP S +D   R  L T I R +    G   I+ +H
Sbjct: 135 LSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEI-RQLQRRLGVTTIMVTH 193

Query: 149 NMEECEALCTKLTIMVNGQ 167
           + EE  ++  ++ +M +G 
Sbjct: 194 DQEEALSMADRIVVMNHGV 212

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353

>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional

 Score = 39.0 bits (91), Expect = 0.004
 Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 1/108 (0%)

Query: 71  VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW 130
           V E+++   L   + R V +LSGG +++   A+ +  +   + LDEPTS +D   +  + 
Sbjct: 128 VEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVL 187

Query: 131 TCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 177
             + R   E G  VI   H++      C  L  +  G+    G+   L
Sbjct: 188 ALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEL 235

Length = 265

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score = 39.6 bits (93), Expect = 0.004
 Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 7/80 (8%)

Query: 92  SGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIE--RAVSE--GRCVILTS 147
           SGG +++++ A AL+  P LI LDEPTS +D   +      ++  R + +  G   +  S
Sbjct: 428 SGGQRQRIAIARALILKPELILLDEPTSALDRSVQA---QVLDLLRDLQQKHGLSYLFIS 484

Query: 148 HNMEECEALCTKLTIMVNGQ 167
           H++    ALC ++ +M +G+
Sbjct: 485 HDLAVVRALCHRVIVMRDGK 504

Length = 534

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	566
COG1123	539	ATPase components of various ABC-type transport sy	100.0
PRK10261	623	glutathione transporter ATP-binding protein; Provi	100.0
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	100.0
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	100.0
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	100.0
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	100.0
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	100.0
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	100.0
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	100.0
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	100.0
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	100.0
COG4172	534	ABC-type uncharacterized transport system, duplica	100.0
PRK10938	490	putative molybdenum transport ATP-binding protein	100.0
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	100.0
PRK15064	530	ABC transporter ATP-binding protein; Provisional	100.0
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	100.0
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	100.0
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	100.0
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	100.0
PRK13409	590	putative ATPase RIL; Provisional	100.0
COG3845	501	ABC-type uncharacterized transport systems, ATPase	100.0
PRK11147	635	ABC transporter ATPase component; Reviewed	100.0
COG0488	530	Uup ATPase components of ABC transporters with dup	100.0
KOG0055|consensus	1228		100.0
PLN03073	718	ABC transporter F family; Provisional	100.0
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	100.0
PLN03232	1495	ABC transporter C family member; Provisional	100.0
PLN03130	1622	ABC transporter C family member; Provisional	100.0
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	100.0
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	100.0
PLN03140	1470	ABC transporter G family member; Provisional	100.0
PTZ00243	1560	ABC transporter; Provisional	100.0
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	100.0
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	100.0
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	100.0
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	100.0
KOG0054|consensus	1381		100.0
COG1127	263	Ttg2A ABC-type transport system involved in resist	100.0
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	100.0
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	100.0
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	100.0
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	100.0
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	100.0
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	100.0
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	100.0
COG3638	258	ABC-type phosphate/phosphonate transport system, A	100.0
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	100.0
PRK13537	306	nodulation ABC transporter NodI; Provisional	100.0
KOG0927|consensus	614		100.0
COG2884	223	FtsE Predicted ATPase involved in cell division [C	100.0
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	100.0
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	100.0
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	100.0
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	100.0
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	100.0
PRK13536	340	nodulation factor exporter subunit NodI; Provision	100.0
KOG0062|consensus	582		100.0
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	100.0
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	100.0
COG4152	300	ABC-type uncharacterized transport system, ATPase	100.0
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	100.0
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	100.0
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	100.0
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	100.0
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	100.0
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	100.0
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	100.0
COG0411	250	LivG ABC-type branched-chain amino acid transport	100.0
PRK00635	1809	excinuclease ABC subunit A; Provisional	100.0
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	100.0
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	100.0
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	100.0
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	100.0
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	100.0
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	100.0
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	100.0
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	100.0
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	100.0
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	100.0
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	100.0
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	100.0
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	100.0
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	100.0
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	100.0
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	100.0
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	100.0
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	100.0
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	100.0
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	100.0
cd03269	210	ABC_putative_ATPase This subfamily is involved in	100.0
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	100.0
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	100.0
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	100.0
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	100.0
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	100.0
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	100.0
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	100.0
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	100.0
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	100.0
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	100.0
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	100.0
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	100.0
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	100.0
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	100.0
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	100.0
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	100.0
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	100.0
PRK10908	222	cell division protein FtsE; Provisional	100.0
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	100.0
COG0410	237	LivF ABC-type branched-chain amino acid transport	100.0
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	100.0
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	100.0
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	100.0
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	100.0
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	100.0
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	100.0
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	100.0
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	100.0
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	100.0
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	100.0
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	100.0
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	100.0
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	100.0
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	100.0
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	100.0
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	100.0
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	100.0
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
COG4598	256	HisP ABC-type histidine transport system, ATPase c	100.0
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	100.0
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	100.0
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	100.0
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	100.0
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	100.0
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	100.0
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	100.0
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	100.0
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	100.0
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	100.0
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	100.0
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	100.0
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	100.0
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	100.0
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	100.0
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	100.0
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	100.0
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	100.0
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	100.0
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	100.0
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	100.0
COG4181	228	Predicted ABC-type transport system involved in ly	100.0
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	100.0
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	100.0
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	100.0
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	100.0
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	100.0
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK09984	262	phosphonate/organophosphate ester transporter subu	100.0
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	100.0
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	100.0
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	100.0
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	100.0
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	100.0
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	100.0
cd03299	235	ABC_ModC_like Archeal protein closely related to M	100.0
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	100.0
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	100.0
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	100.0
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	100.0
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	100.0
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	100.0
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	100.0
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	100.0
cd03234	226	ABCG_White The White subfamily represents ABC tran	100.0
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	100.0
COG4559	259	ABC-type hemin transport system, ATPase component	100.0
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
KOG0066|consensus	807		100.0
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	100.0
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	100.0
COG4525	259	TauB ABC-type taurine transport system, ATPase com	100.0
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	100.0
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	100.0
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	100.0
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	100.0
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	100.0
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	100.0
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	100.0
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	100.0
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	100.0
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	100.0
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	100.0
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	100.0
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	100.0
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	100.0
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10261	623	glutathione transporter ATP-binding protein; Provi	100.0
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	100.0
COG1123	539	ATPase components of various ABC-type transport sy	100.0
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	100.0
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	100.0
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	100.0
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	100.0
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	100.0
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	100.0
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	100.0
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	100.0
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	100.0
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	100.0
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK03695	248	vitamin B12-transporter ATPase; Provisional	100.0
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	100.0
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	100.0
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	100.0
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	100.0
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	100.0
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	100.0
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	100.0
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	100.0
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	100.0
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	100.0
PRK13546	264	teichoic acids export protein ATP-binding subunit;	100.0
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	100.0
COG3845	501	ABC-type uncharacterized transport systems, ATPase	100.0
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	100.0
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	100.0
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	100.0
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	100.0
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	100.0
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	100.0
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	100.0
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	100.0
PRK10938	490	putative molybdenum transport ATP-binding protein	100.0
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	100.0
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	100.0
cd03215	182	ABC_Carb_Monos_II This family represents domain II	100.0
cd03246	173	ABCC_Protease_Secretion This family represents the	100.0
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	100.0
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	100.0
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	100.0
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	100.0
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	100.0
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	100.0
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	100.0
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	100.0
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	100.0
COG4988	559	CydD ABC-type transport system involved in cytochr	100.0
KOG0058|consensus	716		100.0
COG4619	223	ABC-type uncharacterized transport system, ATPase	100.0
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	100.0
KOG0065|consensus	1391		100.0
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	100.0
cd03216	163	ABC_Carb_Monos_I This family represents the domain	100.0
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	100.0
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	100.0
KOG0057|consensus	591		100.0
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	100.0
COG4586	325	ABC-type uncharacterized transport system, ATPase	100.0
PLN03211	659	ABC transporter G-25; Provisional	100.0
PRK10535	648	macrolide transporter ATP-binding /permease protei	100.0
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	100.0
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	100.0
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	100.0
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	100.0
PRK15064	530	ABC transporter ATP-binding protein; Provisional	100.0
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	100.0
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	100.0
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	100.0
KOG0055|consensus	1228		100.0
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	100.0
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	100.0
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	100.0
COG4674	249	Uncharacterized ABC-type transport system, ATPase	100.0
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	100.0
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	100.0
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	100.0
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	100.0
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	100.0
COG4987	573	CydC ABC-type transport system involved in cytochr	100.0
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	100.0
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	100.0
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	100.0
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	100.0
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	100.0
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	100.0
COG4172	534	ABC-type uncharacterized transport system, duplica	100.0
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	100.0
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	100.0
KOG0059|consensus	885		100.0
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	100.0
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	100.0
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	100.0
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	100.0
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	100.0
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	100.0
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	100.0
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	100.0
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	100.0
PRK10522	547	multidrug transporter membrane component/ATP-bindi	100.0
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	100.0
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	100.0
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	100.0
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	100.0
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	100.0
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	100.0
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	100.0
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	100.0
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	100.0
PRK11147	635	ABC transporter ATPase component; Reviewed	100.0
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	100.0
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	100.0
COG0488	530	Uup ATPase components of ABC transporters with dup	100.0
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	100.0
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	100.0
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	100.0
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	100.0
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	100.0
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	100.0
COG4133	209	CcmA ABC-type transport system involved in cytochr	100.0
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	100.0
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	100.0
COG1127	263	Ttg2A ABC-type transport system involved in resist	100.0
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	100.0
PRK13409	590	putative ATPase RIL; Provisional	100.0
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	100.0
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	100.0
KOG0056|consensus	790		100.0
COG4136	213	ABC-type uncharacterized transport system, ATPase	100.0
PLN03140	1470	ABC transporter G family member; Provisional	100.0
COG4152	300	ABC-type uncharacterized transport system, ATPase	100.0
PRK13537	306	nodulation ABC transporter NodI; Provisional	100.0
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	100.0
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	100.0
PRK00635	1809	excinuclease ABC subunit A; Provisional	100.0
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	100.0
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	100.0
KOG0061|consensus	613		100.0
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	100.0
PLN03073	718	ABC transporter F family; Provisional	100.0
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	100.0
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	100.0
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	100.0
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	100.0
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	100.0
PRK13536	340	nodulation factor exporter subunit NodI; Provision	100.0
PLN03232	1495	ABC transporter C family member; Provisional	100.0
PLN03130	1622	ABC transporter C family member; Provisional	100.0
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	100.0
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	100.0
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	100.0
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	100.0
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	100.0
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	100.0
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	100.0
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	100.0
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	100.0
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	100.0
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	100.0
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	100.0
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	100.0
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	100.0
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	100.0
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	100.0
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	100.0
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	100.0
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	100.0
PTZ00243	1560	ABC transporter; Provisional	100.0
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	100.0
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	100.0
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	100.0
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	100.0
COG2884	223	FtsE Predicted ATPase involved in cell division [C	100.0
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	100.0
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	100.0
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	100.0
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	100.0
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	100.0
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	100.0
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	100.0
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	100.0
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	100.0
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	100.0
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	100.0
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	100.0
cd03269	210	ABC_putative_ATPase This subfamily is involved in	100.0
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	100.0
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	100.0
COG3638	258	ABC-type phosphate/phosphonate transport system, A	100.0
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	100.0
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	100.0
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	100.0
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	100.0
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	100.0
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	100.0
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	100.0
COG0411	250	LivG ABC-type branched-chain amino acid transport	100.0
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	100.0
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	100.0
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	100.0
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	100.0
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	100.0
COG4598	256	HisP ABC-type histidine transport system, ATPase c	100.0
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	100.0
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	100.0
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	100.0
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	100.0
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	100.0
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	100.0
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	100.0
PRK10908	222	cell division protein FtsE; Provisional	100.0
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	100.0
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	100.0
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	100.0
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	100.0
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	100.0
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	100.0
KOG0054|consensus	1381		100.0
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	100.0
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	99.98
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	99.98
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	99.98
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	99.98
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	99.98
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	99.98
COG0410	237	LivF ABC-type branched-chain amino acid transport	99.98
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	99.98
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	99.98
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.98
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.98
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.98
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	99.98
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	99.98
PF00005	137	ABC_tran: ABC transporter This structure is on hol	99.98
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	99.98
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	99.98
cd03299	235	ABC_ModC_like Archeal protein closely related to M	99.98
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	99.98
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.98
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.98
KOG0063|consensus	592		99.98
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	99.98
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	99.98
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	99.98
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	99.97

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=100.00  E-value=3.7e-79  Score=645.38  Aligned_cols=437  Identities=24%  Similarity=0.324  Sum_probs=355.0

Q ss_pred             CCcchHHHHHhccccCCC-ccCC------CCC---ccc----ccccceeEEcCCC--CCCCCCCHHHHHHHHHHhcC-CC
Q psy7366           1 MGLTTTPKRVVTLLLTTQ-KVPG------SNP---TID----KNLSYIGYCPQFD--ALNDRLTPREHLEFYSRVRN-VP   63 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~-~~~~------~~~---~~~----~~~~~ig~v~Q~~--~l~~~~tv~e~l~~~~~~~~-~~   63 (566)
                      +||||+.+++.|++-++- ...|      .+.   ...    -+...|+|+||+|  .+.|-+||.+.+.-.....+ .+
T Consensus        46 sGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~  125 (539)
T COG1123          46 SGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGS  125 (539)
T ss_pred             CCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhcccc
Confidence            599999999999998662 1111      110   111    1346799999998  45677999999976655543 55


Q ss_pred             hhhHHHHHHHHHHHcCCCcccc--cccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHh-CC
Q psy7366          64 SVLLNTIVNESLNKFALGHYSD--REVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS-EG  140 (566)
Q Consensus        64 ~~~~~~~~~~~l~~~gl~~~~~--~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g  140 (566)
                      ..+..+++.++|+.+||++...  +++++||||||||+.||+||+.+|++||+||||++||+..+.++.++|+++.+ .|
T Consensus       126 ~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g  205 (539)
T COG1123         126 RAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELG  205 (539)
T ss_pred             HHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcC
Confidence            7888999999999999987554  59999999999999999999999999999999999999999999999999964 59


Q ss_pred             CEEEEecCChhHHHhhcCEEEEEeCCEEEEecChhHHHhhccCccccCCCCCCCCccchhHHHhhccCCCCccccCCCcc
Q psy7366         141 RCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKSMALPVSGNDLGRGDPVRSELSRALNDGSGSGIRNSARPE  220 (566)
Q Consensus       141 ~tviiisH~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (566)
                      .++|+||||+..+.++||||+||++|++++.|+++++..... +|+.           ..+..+....            
T Consensus       206 ~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~~p~-hpYT-----------~~Ll~a~p~~------------  261 (539)
T COG1123         206 MAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILSNPQ-HPYT-----------RGLLAAVPRL------------  261 (539)
T ss_pred             cEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHHHHhccC-Cccc-----------HHHHhhCCCc------------
Confidence            999999999999999999999999999999999999876422 1111           0000000000            


Q ss_pred             cccccccccCCccchhhhhhhHHHHHHHHHHHHhhhhheeeccCCeeeeeeccchhhchHHHHHHHHHHHHHHHHHHHHH
Q psy7366         221 VSGFYNENIDGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNGTRLVAVNIWAWRIIGKNLTCMACHGALYSAINLSI  300 (566)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (566)
                                                                                                      
T Consensus       262 --------------------------------------------------------------------------------  261 (539)
T COG1123         262 --------------------------------------------------------------------------------  261 (539)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHhhhhcccccCCCCCCCcchhHHHHHHhhhcCCCCCCeEEEeeeEEEeCCc-------CCCcceeeeeeEEEeCCc
Q psy7366         301 EYKVFSRCFTRSNLHPVPVSLEEDDVRKERERVEHGADSGDVLVVKRLFKIYANS-------KGTKPAVNQISFGVGRGE  373 (566)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~-------~~~~~~l~~isl~i~~Ge  373 (566)
                                          ......   ......+....++++++||++.|...       .+...+++||||+|.+||
T Consensus       262 --------------------~~~~~~---~~~~~~~~~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE  318 (539)
T COG1123         262 --------------------GDEKII---RLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGE  318 (539)
T ss_pred             --------------------cccccc---ccccccccccCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCC
Confidence                                000000   00000000134579999999999732       123578999999999999


Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccC--CC-chHHhcCceEEEecCC--CCCCCCCHHHHHHHHHHhcC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI--RD-SMDLVRSYIGYCPQFD--ALNDRLTPREHLEFYSRVRN  448 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~--~~-~~~~~~~~i~~v~q~~--~l~~~~tv~e~l~~~~~~~~  448 (566)
                      ++||+|+||||||||.|+|+|+.+|++|+|.++|.+.  +. .....++++-++||||  .+.|.+||.+++......+.
T Consensus       319 ~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~  398 (539)
T COG1123         319 TLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHG  398 (539)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhc
Confidence            9999999999999999999999999999999999873  21 2334567889999997  58999999999988776554


Q ss_pred             CC-chHHHHHHHHHHHHcCCCC-ccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy7366         449 VP-SVLLNTIVNESLNKFALGH-YSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE  526 (566)
Q Consensus       449 ~~-~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~  526 (566)
                      .. ..+.++++.++++.++|.+ +++++|.+||||||||++|||||+.+|++||+|||||.||+..+..+.++|.+++++
T Consensus       399 ~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e  478 (539)
T COG1123         399 GGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEE  478 (539)
T ss_pred             ccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHH
Confidence            32 3444567999999999985 799999999999999999999999999999999999999999999999999999887


Q ss_pred             -CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         527 -GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       527 -g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                       |.|.|+||||++.+..+||||++|++|+|++.|+.+++
T Consensus       479 ~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~~v  517 (539)
T COG1123         479 LGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKV  517 (539)
T ss_pred             hCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCHHHH
Confidence             99999999999999999999999999999999987654

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.2e-78  Score=672.80  Aligned_cols=456  Identities=22%  Similarity=0.267  Sum_probs=350.7

Q ss_pred             CCcchHHHHHhccccCCCc---cCCCC----------C---ccc---c-cccceeEEcCCC--CCCCCCCHHHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQK---VPGSN----------P---TID---K-NLSYIGYCPQFD--ALNDRLTPREHLEFYSR   58 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~---~~~~~----------~---~~~---~-~~~~ig~v~Q~~--~l~~~~tv~e~l~~~~~   58 (566)
                      .||||++|+++|++.+...   +.+..          .   ...   . +...||||+|+|  .+++.+||.||+.+..+
T Consensus        53 sGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~  132 (623)
T PRK10261         53 SGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIR  132 (623)
T ss_pred             ChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHH
Confidence            5999999999999876431   12210          0   000   0 124699999998  67888999999998765


Q ss_pred             hc-CCChhhHHHHHHHHHHHcCCCc---ccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHH
Q psy7366          59 VR-NVPSVLLNTIVNESLNKFALGH---YSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIE  134 (566)
Q Consensus        59 ~~-~~~~~~~~~~~~~~l~~~gl~~---~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~  134 (566)
                      .. +.+..+..+++.++++.+||..   .+++++.+|||||||||+||+||+.+|+||||||||++||+.+++++.++|+
T Consensus       133 ~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~  212 (623)
T PRK10261        133 LHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIK  212 (623)
T ss_pred             HhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHH
Confidence            53 5666677788999999999963   5789999999999999999999999999999999999999999999999999


Q ss_pred             HHHhC-CCEEEEecCChhHHHhhcCEEEEEeCCEEEEecChhHHHhhccCccccCCCCCCCCccchhHHHhhccCCCCcc
Q psy7366         135 RAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKSMALPVSGNDLGRGDPVRSELSRALNDGSGSGI  213 (566)
Q Consensus       135 ~l~~~-g~tviiisH~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (566)
                      +++++ |+|||+||||++++.++||||++|++|+++..|+++++..... .++.           ..+.........   
T Consensus       213 ~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~~~g~~~~~~~~~~-~~~~-----------~~l~~~~~~~~~---  277 (623)
T PRK10261        213 VLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQIFHAPQ-HPYT-----------RALLAAVPQLGA---  277 (623)
T ss_pred             HHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeecccCCHHHhhcCCC-Chhh-----------hhhhhccCcccc---
Confidence            99755 9999999999999999999999999999999999887643210 0000           000000000000   


Q ss_pred             ccCCCcccccccccccCCccchhhhhhhHHHHHHHHHHHHhhhhheeeccCCeeeeeeccchhhchHHHHHHHHHHHHHH
Q psy7366         214 RNSARPEVSGFYNENIDGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNGTRLVAVNIWAWRIIGKNLTCMACHGALY  293 (566)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (566)
                             ..   .....                           ...                                 
T Consensus       278 -------~~---~~~~~---------------------------~~~---------------------------------  287 (623)
T PRK10261        278 -------MK---GLDYP---------------------------RRF---------------------------------  287 (623)
T ss_pred             -------cc---cccCC---------------------------ccc---------------------------------
Confidence                   00   00000                           000                                 


Q ss_pred             HHHHHHHHHHHHhhhhcccccCCCCCCCcchhHHHHHHhhhcCCCCCCeEEEeeeEEEeCCcC-------CCcceeeeee
Q psy7366         294 SAINLSIEYKVFSRCFTRSNLHPVPVSLEEDDVRKERERVEHGADSGDVLVVKRLFKIYANSK-------GTKPAVNQIS  366 (566)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~-------~~~~~l~~is  366 (566)
                                      +.... .........    ..  .........+|+++|+++.|+...       +...+|+|+|
T Consensus       288 ----------------~~~~~-~~~~~~~~~----~~--~~~~~~~~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs  344 (623)
T PRK10261        288 ----------------PLISL-EHPAKQEPP----IE--QDTVVDGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVS  344 (623)
T ss_pred             ----------------ccccc-ccccccCcc----cc--cccccCCCceEEEeeeEEEEcCCCccccccCCceEEEeeeE
Confidence                            00000 000000000    00  000001124799999999996211       1246999999


Q ss_pred             EEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc----hHHhcCceEEEecCC--CCCCCCCHHHHH
Q psy7366         367 FGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS----MDLVRSYIGYCPQFD--ALNDRLTPREHL  440 (566)
Q Consensus       367 l~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~----~~~~~~~i~~v~q~~--~l~~~~tv~e~l  440 (566)
                      |+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++...    ...++++|+|+||++  .+++.+||.+|+
T Consensus       345 ~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l  424 (623)
T PRK10261        345 FDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSI  424 (623)
T ss_pred             eEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHH
Confidence            99999999999999999999999999999999999999999987542    123467899999997  588899999999


Q ss_pred             HHHHHhcCC-CchHHHHHHHHHHHHcCCC-CccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHH
Q psy7366         441 EFYSRVRNV-PSVLLNTIVNESLNKFALG-HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT  518 (566)
Q Consensus       441 ~~~~~~~~~-~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~  518 (566)
                      .+.....+. ......+++.++++.++|. ...++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+++
T Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~  504 (623)
T PRK10261        425 MEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIIN  504 (623)
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence            876544333 2333456788999999996 57899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         519 CIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       519 ~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      +|++++++ |.|||+||||++++..+|||+++|++|++++.|+++++
T Consensus       505 ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~~~i  551 (623)
T PRK10261        505 LLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAV  551 (623)
T ss_pred             HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence            99999875 89999999999999999999999999999999988765

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8.1e-78  Score=658.88  Aligned_cols=427  Identities=21%  Similarity=0.284  Sum_probs=343.5

Q ss_pred             CCcchHHHHHhccccC----CC-ccCCCCCccc----ccccceeEEcCCCCCCCCCCHHHHHHHHHHhc--C-CChhhHH
Q psy7366           1 MGLTTTPKRVVTLLLT----TQ-KVPGSNPTID----KNLSYIGYCPQFDALNDRLTPREHLEFYSRVR--N-VPSVLLN   68 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~----~~-~~~~~~~~~~----~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~--~-~~~~~~~   68 (566)
                      .||||++|+++|++.+    |+ .+.+......    .....||||||++.+++.+||.||+.+.....  + .+..+..
T Consensus        42 sGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~  121 (506)
T PRK13549         42 AGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMY  121 (506)
T ss_pred             CCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHH
Confidence            5999999999999875    22 1223221111    11356999999999999999999998865432  1 2334556


Q ss_pred             HHHHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecC
Q psy7366          69 TIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH  148 (566)
Q Consensus        69 ~~~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH  148 (566)
                      +++.++++.+|++...++++.+||||||||++||+||+.+|++|||||||++||+.++.++.++|++++++|.|||++||
T Consensus       122 ~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH  201 (506)
T PRK13549        122 LRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISH  201 (506)
T ss_pred             HHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence            78899999999998889999999999999999999999999999999999999999999999999999778999999999


Q ss_pred             ChhHHHhhcCEEEEEeCCEEEEecChhHHHhhccCccccCCCCCCCCccchhHHHhhccCCCCccccCCCcccccccccc
Q psy7366         149 NMEECEALCTKLTIMVNGQFTCLGSATHLKSKSMALPVSGNDLGRGDPVRSELSRALNDGSGSGIRNSARPEVSGFYNEN  228 (566)
Q Consensus       149 ~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (566)
                      |++++..+||||++|++|+++..|+++++...                   ...+.+...                    
T Consensus       202 ~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-------------------~~~~~~~~~--------------------  242 (506)
T PRK13549        202 KLNEVKAISDTICVIRDGRHIGTRPAAGMTED-------------------DIITMMVGR--------------------  242 (506)
T ss_pred             cHHHHHHhcCEEEEEECCEEeeecccccCCHH-------------------HHHHHhhCc--------------------
Confidence            99999999999999999999988765542110                   000000000                    


Q ss_pred             cCCccchhhhhhhHHHHHHHHHHHHhhhhheeeccCCeeeeeeccchhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy7366         229 IDGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNGTRLVAVNIWAWRIIGKNLTCMACHGALYSAINLSIEYKVFSRC  308 (566)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (566)
                                                                                                      
T Consensus       243 --------------------------------------------------------------------------------  242 (506)
T PRK13549        243 --------------------------------------------------------------------------------  242 (506)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hcccccCCCCCCCcchhHHHHHHhhhcCCCCCCeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHH
Q psy7366         309 FTRSNLHPVPVSLEEDDVRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTT  388 (566)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTL  388 (566)
                             .........     .     ......+|+++|+++.|+.+ +++.+|+|+||+|++||+++|+||||||||||
T Consensus       243 -------~~~~~~~~~-----~-----~~~~~~~l~~~~l~~~~~~~-~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTL  304 (506)
T PRK13549        243 -------ELTALYPRE-----P-----HTIGEVILEVRNLTAWDPVN-PHIKRVDDVSFSLRRGEILGIAGLVGAGRTEL  304 (506)
T ss_pred             -------Ccccccccc-----c-----cCCCCceEEEecCccccccc-cccccccceeeEEcCCcEEEEeCCCCCCHHHH
Confidence                   000000000     0     00112369999999998421 13569999999999999999999999999999


Q ss_pred             HHHHHCCCC-CCccEEEEcCccCCCc--hHHhcCceEEEecCC---CCCCCCCHHHHHHHHHH--hcC---CCchHHHHH
Q psy7366         389 FKMLTGAIK-PTSGNAYVMNHSIRDS--MDLVRSYIGYCPQFD---ALNDRLTPREHLEFYSR--VRN---VPSVLLNTI  457 (566)
Q Consensus       389 l~~i~G~~~-~~~G~i~~~g~~~~~~--~~~~~~~i~~v~q~~---~l~~~~tv~e~l~~~~~--~~~---~~~~~~~~~  457 (566)
                      +|+|+|+++ |++|+|.++|+++...  ....+..++|+||++   .+++++|+.||+.+...  +..   .......+.
T Consensus       305 lk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~  384 (506)
T PRK13549        305 VQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKT  384 (506)
T ss_pred             HHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHH
Confidence            999999998 5999999999887532  233466799999995   47888999999976431  111   122234456


Q ss_pred             HHHHHHHcCCC-CccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccC
Q psy7366         458 VNESLNKFALG-HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN  536 (566)
Q Consensus       458 ~~~~l~~~~l~-~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd  536 (566)
                      +.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.++++|++++++|+|||++|||
T Consensus       385 ~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd  464 (506)
T PRK13549        385 ILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSE  464 (506)
T ss_pred             HHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCC
Confidence            88999999996 57899999999999999999999999999999999999999999999999999998889999999999


Q ss_pred             HHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         537 MEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       537 ~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      ++++.++|||+++|++|+++..|+++++
T Consensus       465 ~~~~~~~~d~v~~l~~G~i~~~~~~~~~  492 (506)
T PRK13549        465 LPEVLGLSDRVLVMHEGKLKGDLINHNL  492 (506)
T ss_pred             HHHHHHhCCEEEEEECCEEEEEeccccC
Confidence            9999999999999999999999988765

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=100.00  E-value=2.2e-77  Score=657.88  Aligned_cols=390  Identities=26%  Similarity=0.358  Sum_probs=326.5

Q ss_pred             cceeEEcCC-CCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCC
Q psy7366          32 SYIGYCPQF-DALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPP  110 (566)
Q Consensus        32 ~~ig~v~Q~-~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~  110 (566)
                      ..|||+||+ +.+++.+||+||+.+.....+.+..+..+++.++++.+||+...++++.+|||||||||+||+||+.+|+
T Consensus       109 ~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~  188 (520)
T TIGR03269       109 KRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPF  188 (520)
T ss_pred             hcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCcccCCHHHHHHHHHHHHHhcCCC
Confidence            469999998 6788889999999987655566666667889999999999988899999999999999999999999999


Q ss_pred             EEEeeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEecCChhHHHhhcCEEEEEeCCEEEEecChhHHHhhccCccccCC
Q psy7366         111 LIFLDEPTSGMDPGARRFLWTCIERAVS-EGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKSMALPVSGN  189 (566)
Q Consensus       111 vLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviiisH~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~~~~~~~~~~~  189 (566)
                      +|||||||++||+.+++++.++|+++.+ .|.|||+||||++++.++||||++|++|+++..|+++++.....       
T Consensus       189 lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~-------  261 (520)
T TIGR03269       189 LFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAVFM-------  261 (520)
T ss_pred             EEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEeCCEEeeecCHHHHHHHHH-------
Confidence            9999999999999999999999999865 59999999999999999999999999999998887766532100       


Q ss_pred             CCCCCCccchhHHHhhccCCCCccccCCCcccccccccccCCccchhhhhhhHHHHHHHHHHHHhhhhheeeccCCeeee
Q psy7366         190 DLGRGDPVRSELSRALNDGSGSGIRNSARPEVSGFYNENIDGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNGTRLV  269 (566)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (566)
                                   ....                                                               
T Consensus       262 -------------~~~~---------------------------------------------------------------  265 (520)
T TIGR03269       262 -------------EGVS---------------------------------------------------------------  265 (520)
T ss_pred             -------------hhch---------------------------------------------------------------
Confidence                         0000                                                               


Q ss_pred             eeccchhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCcchhHHHHHHhhhcCCCCCCeEEEeeeE
Q psy7366         270 AVNIWAWRIIGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNLHPVPVSLEEDDVRKERERVEHGADSGDVLVVKRLF  349 (566)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~  349 (566)
                                                                    ...   ...     .     ......+|+++|++
T Consensus       266 ----------------------------------------------~~~---~~~-----~-----~~~~~~~l~~~~l~  286 (520)
T TIGR03269       266 ----------------------------------------------EVE---KEC-----E-----VEVGEPIIKVRNVS  286 (520)
T ss_pred             ----------------------------------------------hhc---ccc-----c-----cCCCCceEEEeccE
Confidence                                                          000   000     0     00012379999999


Q ss_pred             EEeCC-cCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEc-Ccc---CCCc----hHHhcCc
Q psy7366         350 KIYAN-SKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM-NHS---IRDS----MDLVRSY  420 (566)
Q Consensus       350 ~~y~~-~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~-g~~---~~~~----~~~~~~~  420 (566)
                      +.|+. ..+.+.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++ |.+   +...    ....+++
T Consensus       287 ~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~  366 (520)
T TIGR03269       287 KRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRY  366 (520)
T ss_pred             EEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhh
Confidence            99952 1123569999999999999999999999999999999999999999999996 643   2211    1234567


Q ss_pred             eEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCC-----ccccCcCcCChhHHHHHHHHHHHcCC
Q psy7366         421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGH-----YSDREVRTLSGGNKRKLSTAIALLGN  495 (566)
Q Consensus       421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----~~~~~~~~LSgGqkqrv~la~al~~~  495 (566)
                      ++|+||++.+++.+|+.||+.+.... ..+....+.++.++++.+++..     ..++++.+|||||||||+|||||+.+
T Consensus       367 i~~v~q~~~l~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~  445 (520)
T TIGR03269       367 IGILHQEYDLYPHRTVLDNLTEAIGL-ELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKE  445 (520)
T ss_pred             EEEEccCcccCCCCcHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence            99999999899999999999875432 2233333456788999999964     57899999999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         496 PPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       496 p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      |++|||||||+|||+.+++.++++|++++++ |.|||++|||++++..+|||+++|++|++++.|+++++
T Consensus       446 p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~  515 (520)
T TIGR03269       446 PRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEI  515 (520)
T ss_pred             CCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence            9999999999999999999999999999765 89999999999999999999999999999999988765

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=100.00  E-value=1e-76  Score=653.53  Aligned_cols=429  Identities=23%  Similarity=0.299  Sum_probs=342.9

Q ss_pred             CCcchHHHHHhccccC-------CC-ccCCCCCcc---c----ccccceeEEcCCCC--CCCCCCHHHHHHHHHHh-cCC
Q psy7366           1 MGLTTTPKRVVTLLLT-------TQ-KVPGSNPTI---D----KNLSYIGYCPQFDA--LNDRLTPREHLEFYSRV-RNV   62 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~-------~~-~~~~~~~~~---~----~~~~~ig~v~Q~~~--l~~~~tv~e~l~~~~~~-~~~   62 (566)
                      .||||++|+++|++.+       |+ .+.+.....   .    ...++|||+||++.  +++.+|+.+++.+.... .+.
T Consensus        46 sGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (529)
T PRK15134         46 SGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGM  125 (529)
T ss_pred             CcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCC
Confidence            5999999999999974       22 122222111   0    01246999999985  56678999998765432 245


Q ss_pred             ChhhHHHHHHHHHHHcCCCc---ccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy7366          63 PSVLLNTIVNESLNKFALGH---YSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE  139 (566)
Q Consensus        63 ~~~~~~~~~~~~l~~~gl~~---~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~  139 (566)
                      +..+..+++.++++.+||++   ..++++.+|||||||||+||+||+.+|++|||||||++||+.+++++.++|++++++
T Consensus       126 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~  205 (529)
T PRK15134        126 RREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQE  205 (529)
T ss_pred             CHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHh
Confidence            55566788999999999975   358999999999999999999999999999999999999999999999999999765


Q ss_pred             -CCEEEEecCChhHHHhhcCEEEEEeCCEEEEecChhHHHhhccCccccCCCCCCCCccchhHHHhhccCCCCccccCCC
Q psy7366         140 -GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKSMALPVSGNDLGRGDPVRSELSRALNDGSGSGIRNSAR  218 (566)
Q Consensus       140 -g~tviiisH~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (566)
                       |.|||+||||++++..+||||++|++|+++..|+++++......                .....+..           
T Consensus       206 ~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~----------------~~~~~~~~-----------  258 (529)
T PRK15134        206 LNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATLFSAPTH----------------PYTQKLLN-----------  258 (529)
T ss_pred             cCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEeCCHHHHhhCCCC----------------HHHHHHHH-----------
Confidence             89999999999999999999999999999999988775421000                00000000           


Q ss_pred             cccccccccccCCccchhhhhhhHHHHHHHHHHHHhhhhheeeccCCeeeeeeccchhhchHHHHHHHHHHHHHHHHHHH
Q psy7366         219 PEVSGFYNENIDGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNGTRLVAVNIWAWRIIGKNLTCMACHGALYSAINL  298 (566)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (566)
                                                                                                      
T Consensus       259 --------------------------------------------------------------------------------  258 (529)
T PRK15134        259 --------------------------------------------------------------------------------  258 (529)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHhhhhcccccCCCCCCCcchhHHHHHHhhhcCCCCCCeEEEeeeEEEeCCcC-------CCcceeeeeeEEEeC
Q psy7366         299 SIEYKVFSRCFTRSNLHPVPVSLEEDDVRKERERVEHGADSGDVLVVKRLFKIYANSK-------GTKPAVNQISFGVGR  371 (566)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~-------~~~~~l~~isl~i~~  371 (566)
                         .             ...  ....     .    .......+++++|+++.|+...       +.+.+|+++||+|++
T Consensus       259 ---~-------------~~~--~~~~-----~----~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~  311 (529)
T PRK15134        259 ---S-------------EPS--GDPV-----P----LPEPASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRP  311 (529)
T ss_pred             ---h-------------Ccc--cccc-----c----cCCCCCCcccccCcEEEeecCccccccccccceeeecceeEEcC
Confidence               0             000  0000     0    0001123699999999995211       135799999999999


Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc-h---HHhcCceEEEecCC--CCCCCCCHHHHHHHHHH
Q psy7366         372 GECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS-M---DLVRSYIGYCPQFD--ALNDRLTPREHLEFYSR  445 (566)
Q Consensus       372 Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~---~~~~~~i~~v~q~~--~l~~~~tv~e~l~~~~~  445 (566)
                      ||++||+||||||||||+|+|+|+++ ++|+|+++|+++... .   ..++++++|+||++  .+++.+||.||+.+...
T Consensus       312 Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~  390 (529)
T PRK15134        312 GETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLR  390 (529)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHH
Confidence            99999999999999999999999995 899999999887531 1   12356799999997  47888999999987643


Q ss_pred             hcC--CCchHHHHHHHHHHHHcCCC-CccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy7366         446 VRN--VPSVLLNTIVNESLNKFALG-HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER  522 (566)
Q Consensus       446 ~~~--~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~  522 (566)
                      .+.  .+....++.+.++++.+++. ...++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.++++|++
T Consensus       391 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~  470 (529)
T PRK15134        391 VHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKS  470 (529)
T ss_pred             hccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHH
Confidence            321  23333456788999999997 568999999999999999999999999999999999999999999999999999


Q ss_pred             HHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         523 AVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       523 ~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      ++++ |.|||++|||++++..+|||+++|++|++++.|+++++
T Consensus       471 ~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~  513 (529)
T PRK15134        471 LQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERV  513 (529)
T ss_pred             HHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEEcCHHHH
Confidence            9875 89999999999999999999999999999999988765

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.7e-77  Score=653.73  Aligned_cols=423  Identities=22%  Similarity=0.344  Sum_probs=338.9

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcc----cccccceeEEcCCCCCCCCCCHHHHHHHHHHh----cCC---Chhh
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI----DKNLSYIGYCPQFDALNDRLTPREHLEFYSRV----RNV---PSVL   66 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~----~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~----~~~---~~~~   66 (566)
                      .||||++|++.|++.|..   .+.+.....    .....+|||+||++.+++.+||.||+.+....    .+.   +..+
T Consensus        42 sGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~  121 (510)
T PRK09700         42 AGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWRE  121 (510)
T ss_pred             CCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHH
Confidence            599999999999987644   123322111    11224699999999999999999999875321    121   2334


Q ss_pred             HHHHHHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEe
Q psy7366          67 LNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILT  146 (566)
Q Consensus        67 ~~~~~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviii  146 (566)
                      ..+++.++++.+||....++++.+|||||||||+||+||+.+|++|||||||++||+.++.++.++|++++++|+|||++
T Consensus       122 ~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiiv  201 (510)
T PRK09700        122 MRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYI  201 (510)
T ss_pred             HHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence            56788999999999988899999999999999999999999999999999999999999999999999998789999999


Q ss_pred             cCChhHHHhhcCEEEEEeCCEEEEecChhHHHhhccCccccCCCCCCCCccchhHHHhhccCCCCccccCCCcccccccc
Q psy7366         147 SHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKSMALPVSGNDLGRGDPVRSELSRALNDGSGSGIRNSARPEVSGFYN  226 (566)
Q Consensus       147 sH~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (566)
                      |||++++..+||||++|++|++++.|+++++...                   +....+....   ..            
T Consensus       202 sHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-------------------~~~~~~~~~~---~~------------  247 (510)
T PRK09700        202 SHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSND-------------------DIVRLMVGRE---LQ------------  247 (510)
T ss_pred             eCCHHHHHHhCCEEEEEECCEEeeecchhhCCHH-------------------HHHHHhcCCC---cc------------
Confidence            9999999999999999999999988887654211                   0000000000   00            


Q ss_pred             cccCCccchhhhhhhHHHHHHHHHHHHhhhhheeeccCCeeeeeeccchhhchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7366         227 ENIDGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNGTRLVAVNIWAWRIIGKNLTCMACHGALYSAINLSIEYKVFS  306 (566)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (566)
                                                                                                      
T Consensus       248 --------------------------------------------------------------------------------  247 (510)
T PRK09700        248 --------------------------------------------------------------------------------  247 (510)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhcccccCCCCCCCcchhHHHHHHhhhcCCCCCCeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHH
Q psy7366         307 RCFTRSNLHPVPVSLEEDDVRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKT  386 (566)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKS  386 (566)
                              .........      .    .......+++++|+++.|+      .+|+|+||+|++||+++|+||||||||
T Consensus       248 --------~~~~~~~~~------~----~~~~~~~~l~~~~l~~~~~------~~l~~isl~i~~Ge~~~l~G~NGsGKS  303 (510)
T PRK09700        248 --------NRFNAMKEN------V----SNLAHETVFEVRNVTSRDR------KKVRDISFSVCRGEILGFAGLVGSGRT  303 (510)
T ss_pred             --------ccccccccc------c----ccCCCCcEEEEeCccccCC------CcccceeEEEcCCcEEEEECCCCCCHH
Confidence                    000000000      0    0001123799999998652      389999999999999999999999999


Q ss_pred             HHHHHHHCCCCCCccEEEEcCccCCCc--hHHhcCceEEEecC---CCCCCCCCHHHHHHHHHHhc--------CC-Cch
Q psy7366         387 TTFKMLTGAIKPTSGNAYVMNHSIRDS--MDLVRSYIGYCPQF---DALNDRLTPREHLEFYSRVR--------NV-PSV  452 (566)
Q Consensus       387 TLl~~i~G~~~~~~G~i~~~g~~~~~~--~~~~~~~i~~v~q~---~~l~~~~tv~e~l~~~~~~~--------~~-~~~  452 (566)
                      ||+|+|+|+++|++|+|+++|+++...  ....+++++|+||+   +.+++++|+.||+.+.....        +. ...
T Consensus       304 TLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~  383 (510)
T PRK09700        304 ELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEV  383 (510)
T ss_pred             HHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChH
Confidence            999999999999999999999887532  23446689999998   46888999999997643210        11 122


Q ss_pred             HHHHHHHHHHHHcCCC-CccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEE
Q psy7366         453 LLNTIVNESLNKFALG-HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVI  531 (566)
Q Consensus       453 ~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl  531 (566)
                      .....+.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.++++|++++++|.|||
T Consensus       384 ~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi  463 (510)
T PRK09700        384 DEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVIL  463 (510)
T ss_pred             HHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEE
Confidence            2345678999999997 778999999999999999999999999999999999999999999999999999987899999


Q ss_pred             EEccCHHHHHhhCCEEEEEECCEEEEecCc
Q psy7366         532 LTSHNMEECEALCTKLTIMVNGQFTCLGSA  561 (566)
Q Consensus       532 ~vsHd~~~~~~~~drv~~l~~G~i~~~g~~  561 (566)
                      ++|||++++..+|||+++|++|+++..++.
T Consensus       464 ~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~  493 (510)
T PRK09700        464 MVSSELPEIITVCDRIAVFCEGRLTQILTN  493 (510)
T ss_pred             EEcCCHHHHHhhCCEEEEEECCEEEEEecC
Confidence            999999999999999999999999988765

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=100.00  E-value=2e-76  Score=647.18  Aligned_cols=419  Identities=25%  Similarity=0.339  Sum_probs=338.7

Q ss_pred             CCcchHHHHHhccccCCCc---cCCCCCcc----cccccceeEEcCCCCCCCCCCHHHHHHHHHHhc---C-CChhhHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQK---VPGSNPTI----DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVR---N-VPSVLLNT   69 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~---~~~~~~~~----~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~---~-~~~~~~~~   69 (566)
                      .||||++|+++|++.|+..   +.+.....    ....+.|||++|++.+++.+||+||+.++....   + .+..+.++
T Consensus        41 sGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~  120 (501)
T PRK10762         41 AGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYA  120 (501)
T ss_pred             CCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHH
Confidence            5999999999999976541   23322110    111346999999999999999999998864332   1 23344567


Q ss_pred             HHHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCC
Q psy7366          70 IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN  149 (566)
Q Consensus        70 ~~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~  149 (566)
                      ++.++++.+|+....++++.+||||||||++||+||+.+|++|||||||++||+.++++++++|++++++|.|||++|||
T Consensus       121 ~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd  200 (501)
T PRK10762        121 EADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHR  200 (501)
T ss_pred             HHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence            78999999999988899999999999999999999999999999999999999999999999999998779999999999


Q ss_pred             hhHHHhhcCEEEEEeCCEEEEecChhHHHhhccCccccCCCCCCCCccchhHHHhhccCCCCccccCCCccccccccccc
Q psy7366         150 MEECEALCTKLTIMVNGQFTCLGSATHLKSKSMALPVSGNDLGRGDPVRSELSRALNDGSGSGIRNSARPEVSGFYNENI  229 (566)
Q Consensus       150 ~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (566)
                      ++++..+||||++|++|+++..|+++++...                   ...+.....                     
T Consensus       201 ~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~-------------------~~~~~~~~~---------------------  240 (501)
T PRK10762        201 LKEIFEICDDVTVFRDGQFIAEREVADLTED-------------------SLIEMMVGR---------------------  240 (501)
T ss_pred             HHHHHHhCCEEEEEeCCEEEEecCcCcCCHH-------------------HHHHHhcCC---------------------
Confidence            9999999999999999999987765542110                   000000000                     


Q ss_pred             CCccchhhhhhhHHHHHHHHHHHHhhhhheeeccCCeeeeeeccchhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy7366         230 DGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNGTRLVAVNIWAWRIIGKNLTCMACHGALYSAINLSIEYKVFSRCF  309 (566)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (566)
                                                                                                      
T Consensus       241 --------------------------------------------------------------------------------  240 (501)
T PRK10762        241 --------------------------------------------------------------------------------  240 (501)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCCCCCCCcchhHHHHHHhhhcCCCCCCeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHH
Q psy7366         310 TRSNLHPVPVSLEEDDVRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTF  389 (566)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl  389 (566)
                            ...  ...+     ...   ......+++++|+++         .+|+++||+|.+||+++|+||||||||||+
T Consensus       241 ------~~~--~~~~-----~~~---~~~~~~~l~~~~l~~---------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl  295 (501)
T PRK10762        241 ------KLE--DQYP-----RLD---KAPGEVRLKVDNLSG---------PGVNDVSFTLRKGEILGVSGLMGAGRTELM  295 (501)
T ss_pred             ------Ccc--cccc-----ccc---cCCCCcEEEEeCccc---------CCcccceEEEcCCcEEEEecCCCCCHHHHH
Confidence                  000  0000     000   001123689999973         269999999999999999999999999999


Q ss_pred             HHHHCCCCCCccEEEEcCccCCCc--hHHhcCceEEEecCC---CCCCCCCHHHHHHHHHH--hc---C-CCchHHHHHH
Q psy7366         390 KMLTGAIKPTSGNAYVMNHSIRDS--MDLVRSYIGYCPQFD---ALNDRLTPREHLEFYSR--VR---N-VPSVLLNTIV  458 (566)
Q Consensus       390 ~~i~G~~~~~~G~i~~~g~~~~~~--~~~~~~~i~~v~q~~---~l~~~~tv~e~l~~~~~--~~---~-~~~~~~~~~~  458 (566)
                      |+|+|+++|++|+|.++|+++...  ....++++||+||++   .+++.+|+.||+.+...  ..   + .......+.+
T Consensus       296 ~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~  375 (501)
T PRK10762        296 KVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAV  375 (501)
T ss_pred             HHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHH
Confidence            999999999999999999887542  233566899999996   57888999999976421  11   1 1222334568


Q ss_pred             HHHHHHcCCC-CccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCH
Q psy7366         459 NESLNKFALG-HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM  537 (566)
Q Consensus       459 ~~~l~~~~l~-~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~  537 (566)
                      .++++.+++. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.++++|++++++|.|||++|||+
T Consensus       376 ~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~  455 (501)
T PRK10762        376 SDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEM  455 (501)
T ss_pred             HHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            8999999995 678999999999999999999999999999999999999999999999999999987899999999999


Q ss_pred             HHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         538 EECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       538 ~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      +++..+||++++|++|+++..++++++
T Consensus       456 ~~~~~~~d~v~~l~~G~i~~~~~~~~~  482 (501)
T PRK10762        456 PEVLGMSDRILVMHEGRISGEFTREQA  482 (501)
T ss_pred             HHHHhhCCEEEEEECCEEEEEeccccC
Confidence            999999999999999999999987765

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.9e-76  Score=647.74  Aligned_cols=427  Identities=21%  Similarity=0.300  Sum_probs=338.8

Q ss_pred             CCcchHHHHHhccccC----CC-ccCCCCCcc----cccccceeEEcCCCCCCCCCCHHHHHHHHHHhc--C--CChhhH
Q psy7366           1 MGLTTTPKRVVTLLLT----TQ-KVPGSNPTI----DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVR--N--VPSVLL   67 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~----~~-~~~~~~~~~----~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~--~--~~~~~~   67 (566)
                      .||||++|+++|++.+    |+ .+.+.....    .....+||||||++.+++.+||.||+.+.....  +  .+..+.
T Consensus        38 sGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~  117 (500)
T TIGR02633        38 AGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAM  117 (500)
T ss_pred             CCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHH
Confidence            5999999999999865    22 122221111    011346999999999999999999998764322  1  233455


Q ss_pred             HHHHHHHHHHcCCCccc-ccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEe
Q psy7366          68 NTIVNESLNKFALGHYS-DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILT  146 (566)
Q Consensus        68 ~~~~~~~l~~~gl~~~~-~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviii  146 (566)
                      .+++.++++.+|+.... ++++.+|||||||||+||+||+.+|++|||||||++||+.+++++.++|++++++|.|||++
T Consensus       118 ~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviii  197 (500)
T TIGR02633       118 YLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYI  197 (500)
T ss_pred             HHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence            67889999999998654 67899999999999999999999999999999999999999999999999998889999999


Q ss_pred             cCChhHHHhhcCEEEEEeCCEEEEecChhHHHhhccCccccCCCCCCCCccchhHHHhhccCCCCccccCCCcccccccc
Q psy7366         147 SHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKSMALPVSGNDLGRGDPVRSELSRALNDGSGSGIRNSARPEVSGFYN  226 (566)
Q Consensus       147 sH~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (566)
                      |||++++..+||+|++|++|+++..|+++++...                   .....+...                  
T Consensus       198 tHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~-------------------~~~~~~~~~------------------  240 (500)
T TIGR02633       198 SHKLNEVKAVCDTICVIRDGQHVATKDMSTMSED-------------------DIITMMVGR------------------  240 (500)
T ss_pred             eCcHHHHHHhCCEEEEEeCCeEeeecCcccCCHH-------------------HHHHHHhCc------------------
Confidence            9999999999999999999999877654321100                   000000000                  


Q ss_pred             cccCCccchhhhhhhHHHHHHHHHHHHhhhhheeeccCCeeeeeeccchhhchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7366         227 ENIDGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNGTRLVAVNIWAWRIIGKNLTCMACHGALYSAINLSIEYKVFS  306 (566)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (566)
                                                                                                      
T Consensus       241 --------------------------------------------------------------------------------  240 (500)
T TIGR02633       241 --------------------------------------------------------------------------------  240 (500)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhcccccCCCCCCCcchhHHHHHHhhhcCCCCCCeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHH
Q psy7366         307 RCFTRSNLHPVPVSLEEDDVRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKT  386 (566)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKS  386 (566)
                               .........     .     ......+|+++|+++.|+.+ +++.+|+|+||+|++||+++|+||||||||
T Consensus       241 ---------~~~~~~~~~-----~-----~~~~~~~l~~~~l~~~~~~~-~~~~~l~~is~~i~~Ge~~~l~G~NGsGKS  300 (500)
T TIGR02633       241 ---------EITSLYPHE-----P-----HEIGDVILEARNLTCWDVIN-PHRKRVDDVSFSLRRGEILGVAGLVGAGRT  300 (500)
T ss_pred             ---------ccccccccc-----c-----cCCCCceEEEeCCccccccc-ccccccccceeEEeCCcEEEEeCCCCCCHH
Confidence                     000000000     0     00112379999999988311 134699999999999999999999999999


Q ss_pred             HHHHHHHCCCCC-CccEEEEcCccCCC--chHHhcCceEEEecCC---CCCCCCCHHHHHHHHHH--hc---CCCchHHH
Q psy7366         387 TTFKMLTGAIKP-TSGNAYVMNHSIRD--SMDLVRSYIGYCPQFD---ALNDRLTPREHLEFYSR--VR---NVPSVLLN  455 (566)
Q Consensus       387 TLl~~i~G~~~~-~~G~i~~~g~~~~~--~~~~~~~~i~~v~q~~---~l~~~~tv~e~l~~~~~--~~---~~~~~~~~  455 (566)
                      ||+|+|+|+++| ++|+|.++|+++..  .....+++++|+||++   .+++++|+.+|+.+...  ..   .......+
T Consensus       301 TLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~  380 (500)
T TIGR02633       301 ELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAEL  380 (500)
T ss_pred             HHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHH
Confidence            999999999995 89999999998753  2234567899999996   58889999999976431  11   11222334


Q ss_pred             HHHHHHHHHcCCCC-ccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEc
Q psy7366         456 TIVNESLNKFALGH-YSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTS  534 (566)
Q Consensus       456 ~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vs  534 (566)
                      ..+.++++.+++.. ..++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.++++|++++++|.|||++|
T Consensus       381 ~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivs  460 (500)
T TIGR02633       381 QIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVS  460 (500)
T ss_pred             HHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEEC
Confidence            56889999999974 67999999999999999999999999999999999999999999999999999988899999999


Q ss_pred             cCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         535 HNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       535 Hd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      ||++++..+|||+++|++|++++.++.+++
T Consensus       461 Hd~~~~~~~~d~v~~l~~G~i~~~~~~~~~  490 (500)
T TIGR02633       461 SELAEVLGLSDRVLVIGEGKLKGDFVNHAL  490 (500)
T ss_pred             CCHHHHHHhCCEEEEEECCEEEEEEccccC
Confidence            999999999999999999999988865543

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=100.00  E-value=3.5e-75  Score=637.95  Aligned_cols=427  Identities=21%  Similarity=0.307  Sum_probs=338.0

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcc----cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI----DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNE   73 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~----~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~   73 (566)
                      .||||++|++.|++.|.+   .+.+.....    ......|||++|++.+++.+||.||+.+....    ..+.++++.+
T Consensus        48 sGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~----~~~~~~~~~~  123 (510)
T PRK15439         48 AGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPK----RQASMQKMKQ  123 (510)
T ss_pred             CCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhccccc----chHHHHHHHH
Confidence            599999999999987655   133322111    11124699999999999999999999875321    2345577899


Q ss_pred             HHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHH
Q psy7366          74 SLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEEC  153 (566)
Q Consensus        74 ~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~  153 (566)
                      +++.+|++...++++.+|||||||||+||+||+.+|++|||||||++||+.+++++.++|++++++|+|||++|||++++
T Consensus       124 ~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~  203 (510)
T PRK15439        124 LLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEI  203 (510)
T ss_pred             HHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence            99999999888999999999999999999999999999999999999999999999999999987899999999999999


Q ss_pred             HhhcCEEEEEeCCEEEEecChhHHHhhccCccccCCCCCCCCccchhHHHhhccCCCCccccCCCcccccccccccCCcc
Q psy7366         154 EALCTKLTIMVNGQFTCLGSATHLKSKSMALPVSGNDLGRGDPVRSELSRALNDGSGSGIRNSARPEVSGFYNENIDGKN  233 (566)
Q Consensus       154 ~~~~d~i~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (566)
                      ..+||||++|++|+++..|+++++....                   ....+......  ..     .....        
T Consensus       204 ~~~~d~i~~l~~G~i~~~g~~~~~~~~~-------------------~~~~~~~~~~~--~~-----~~~~~--------  249 (510)
T PRK15439        204 RQLADRISVMRDGTIALSGKTADLSTDD-------------------IIQAITPAARE--KS-----LSASQ--------  249 (510)
T ss_pred             HHhCCEEEEEECCEEEEecChHHcCHHH-------------------HHHHHhCcccc--cc-----ccccc--------
Confidence            9999999999999999999887653210                   00000000000  00     00000        


Q ss_pred             chhhhhhhHHHHHHHHHHHHhhhhheeeccCCeeeeeeccchhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q psy7366         234 LTCMACHGALYSAINLSIEYKVFSRCFTRSNGTRLVAVNIWAWRIIGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSN  313 (566)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (566)
                                                                                           .         .
T Consensus       250 ---------------------------------------------------------------------~---------~  251 (510)
T PRK15439        250 ---------------------------------------------------------------------K---------L  251 (510)
T ss_pred             ---------------------------------------------------------------------c---------c
Confidence                                                                                 0         0


Q ss_pred             cCCCCCCCcchhHHHHHHhhhcCCCCCCeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHH
Q psy7366         314 LHPVPVSLEEDDVRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT  393 (566)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~  393 (566)
                      ....+..  .      .    .......+++++|+++         .+|+++||+|++|+++||+||||||||||+|+|+
T Consensus       252 ~~~~~~~--~------~----~~~~~~~~l~~~~l~~---------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~  310 (510)
T PRK15439        252 WLELPGN--R------R----QQAAGAPVLTVEDLTG---------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLY  310 (510)
T ss_pred             ccccccc--c------c----ccCCCCceEEEeCCCC---------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHc
Confidence            0000000  0      0    0001124799999973         1599999999999999999999999999999999


Q ss_pred             CCCCCCccEEEEcCccCCCc--hHHhcCceEEEecCC---CCCCCCCHHHHHHHHHH--h-cCCCchHHHHHHHHHHHHc
Q psy7366         394 GAIKPTSGNAYVMNHSIRDS--MDLVRSYIGYCPQFD---ALNDRLTPREHLEFYSR--V-RNVPSVLLNTIVNESLNKF  465 (566)
Q Consensus       394 G~~~~~~G~i~~~g~~~~~~--~~~~~~~i~~v~q~~---~l~~~~tv~e~l~~~~~--~-~~~~~~~~~~~~~~~l~~~  465 (566)
                      |+++|++|+|.++|+++...  ....+.+++|+||++   .+++.+|+.+|+.....  . ........++.+.++++.+
T Consensus       311 Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~  390 (510)
T PRK15439        311 GLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRAL  390 (510)
T ss_pred             CCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHc
Confidence            99999999999999987542  223456899999984   48888999999864211  1 1111222345678999999


Q ss_pred             CCC-CccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhC
Q psy7366         466 ALG-HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALC  544 (566)
Q Consensus       466 ~l~-~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~  544 (566)
                      ++. ...++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.++++|++++++|.|||++|||++++..+|
T Consensus       391 ~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~  470 (510)
T PRK15439        391 NIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMA  470 (510)
T ss_pred             CCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhC
Confidence            997 6789999999999999999999999999999999999999999999999999999888999999999999999999


Q ss_pred             CEEEEEECCEEEEecCcccc
Q psy7366         545 TKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       545 drv~~l~~G~i~~~g~~~~l  564 (566)
                      ||+++|++|+++..|+++++
T Consensus       471 d~i~~l~~G~i~~~~~~~~~  490 (510)
T PRK15439        471 DRVLVMHQGEISGALTGAAI  490 (510)
T ss_pred             CEEEEEECCEEEEEEccccC
Confidence            99999999999999988765

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.8e-75  Score=637.02  Aligned_cols=421  Identities=24%  Similarity=0.305  Sum_probs=335.6

Q ss_pred             CCcchHHHHHhccccCCCc---cCCCCCcc----cccccceeEEcCCCCCCCCCCHHHHHHHHHH--hcC-CChhhHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQK---VPGSNPTI----DKNLSYIGYCPQFDALNDRLTPREHLEFYSR--VRN-VPSVLLNTI   70 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~---~~~~~~~~----~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~--~~~-~~~~~~~~~   70 (566)
                      .||||++|+++|++.|.+.   +.+.....    .....+|||+||++.+++.+||.||+.+...  ..+ .+..+..++
T Consensus        41 sGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~  120 (501)
T PRK11288         41 AGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYE  120 (501)
T ss_pred             CCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHH
Confidence            5999999999999866441   22221110    1123579999999999999999999987532  122 234456678


Q ss_pred             HHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCCh
Q psy7366          71 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM  150 (566)
Q Consensus        71 ~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~  150 (566)
                      +.++++.+|++...++++.+||||||||++||+||+.+|+||||||||++||+.+++++.++|++++++|+|||++|||+
T Consensus       121 ~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~  200 (501)
T PRK11288        121 AREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRM  200 (501)
T ss_pred             HHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            89999999998888999999999999999999999999999999999999999999999999999987899999999999


Q ss_pred             hHHHhhcCEEEEEeCCEEEEecChhHHHhhccCccccCCCCCCCCccchhHHHhhccCCCCccccCCCcccccccccccC
Q psy7366         151 EECEALCTKLTIMVNGQFTCLGSATHLKSKSMALPVSGNDLGRGDPVRSELSRALNDGSGSGIRNSARPEVSGFYNENID  230 (566)
Q Consensus       151 ~~~~~~~d~i~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (566)
                      +++..+||||++|++|+++..++.....                  ....+...+...                      
T Consensus       201 ~~~~~~~d~i~~l~~G~i~~~~~~~~~~------------------~~~~~~~~~~~~----------------------  240 (501)
T PRK11288        201 EEIFALCDAITVFKDGRYVATFDDMAQV------------------DRDQLVQAMVGR----------------------  240 (501)
T ss_pred             HHHHHhCCEEEEEECCEEEeecCccccC------------------CHHHHHHHhcCC----------------------
Confidence            9999999999999999998654321000                  000000000000                      


Q ss_pred             CccchhhhhhhHHHHHHHHHHHHhhhhheeeccCCeeeeeeccchhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy7366         231 GKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNGTRLVAVNIWAWRIIGKNLTCMACHGALYSAINLSIEYKVFSRCFT  310 (566)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (566)
                                                                                                      
T Consensus       241 --------------------------------------------------------------------------------  240 (501)
T PRK11288        241 --------------------------------------------------------------------------------  240 (501)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCCCCCCcchhHHHHHHhhhcCCCCCCeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHH
Q psy7366         311 RSNLHPVPVSLEEDDVRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFK  390 (566)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~  390 (566)
                           .........     .     .......+++++++.        ..+++|+||+|++||+++|+||||||||||+|
T Consensus       241 -----~~~~~~~~~-----~-----~~~~~~~l~~~~~~~--------~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk  297 (501)
T PRK11288        241 -----EIGDIYGYR-----P-----RPLGEVRLRLDGLKG--------PGLREPISFSVRAGEIVGLFGLVGAGRSELMK  297 (501)
T ss_pred             -----Ccccccccc-----c-----cCCCCcEEEEecccc--------CCcccceeEEEeCCcEEEEEcCCCCCHHHHHH
Confidence                 000000000     0     000123588999872        24899999999999999999999999999999


Q ss_pred             HHHCCCCCCccEEEEcCccCCC--chHHhcCceEEEecCC---CCCCCCCHHHHHHHHHHhc----C--CCchHHHHHHH
Q psy7366         391 MLTGAIKPTSGNAYVMNHSIRD--SMDLVRSYIGYCPQFD---ALNDRLTPREHLEFYSRVR----N--VPSVLLNTIVN  459 (566)
Q Consensus       391 ~i~G~~~~~~G~i~~~g~~~~~--~~~~~~~~i~~v~q~~---~l~~~~tv~e~l~~~~~~~----~--~~~~~~~~~~~  459 (566)
                      +|+|+++|++|+|+++|+++..  .....+++++|+||++   .+++.+|+.||+.+.....    +  ......++.+.
T Consensus       298 ~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~  377 (501)
T PRK11288        298 LLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENAD  377 (501)
T ss_pred             HHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHH
Confidence            9999999999999999988753  2234567899999996   4888899999987643211    1  11222345678


Q ss_pred             HHHHHcCCC-CccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHH
Q psy7366         460 ESLNKFALG-HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME  538 (566)
Q Consensus       460 ~~l~~~~l~-~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~  538 (566)
                      ++++.+++. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.++++|++++++|.|||++|||++
T Consensus       378 ~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~  457 (501)
T PRK11288        378 RFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLP  457 (501)
T ss_pred             HHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence            999999994 6789999999999999999999999999999999999999999999999999999888999999999999


Q ss_pred             HHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         539 ECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       539 ~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      ++..+||++++|++|++++.|++++.
T Consensus       458 ~~~~~~d~i~~l~~g~i~~~~~~~~~  483 (501)
T PRK11288        458 EVLGVADRIVVMREGRIAGELAREQA  483 (501)
T ss_pred             HHHhhCCEEEEEECCEEEEEEccccC
Confidence            99999999999999999999987764

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5e-75  Score=634.81  Aligned_cols=421  Identities=20%  Similarity=0.282  Sum_probs=336.0

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcc----cccccceeEEcCCCCCCCCCCHHHHHHHHHH-hcC--CChhhHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI----DKNLSYIGYCPQFDALNDRLTPREHLEFYSR-VRN--VPSVLLNTI   70 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~----~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~-~~~--~~~~~~~~~   70 (566)
                      +||||++|+++|++.|.+   .+.+.....    ......|||+||++.+++.+||.||+.+... ..+  .+..+..++
T Consensus        35 sGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~  114 (491)
T PRK10982         35 AGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRD  114 (491)
T ss_pred             CCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHH
Confidence            599999999999987654   123321110    1123569999999999999999999987532 112  233445668


Q ss_pred             HHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCCh
Q psy7366          71 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM  150 (566)
Q Consensus        71 ~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~  150 (566)
                      +.++++.+|+....++++.+|||||||||+||+||+.+|++|||||||++||+.++++++++|++++++|.|||++|||+
T Consensus       115 ~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~  194 (491)
T PRK10982        115 TKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKM  194 (491)
T ss_pred             HHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence            89999999999888999999999999999999999999999999999999999999999999999987899999999999


Q ss_pred             hHHHhhcCEEEEEeCCEEEEecChhHHHhhccCccccCCCCCCCCccchhHHHhhccCCCCccccCCCcccccccccccC
Q psy7366         151 EECEALCTKLTIMVNGQFTCLGSATHLKSKSMALPVSGNDLGRGDPVRSELSRALNDGSGSGIRNSARPEVSGFYNENID  230 (566)
Q Consensus       151 ~~~~~~~d~i~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (566)
                      +++..+||||++|++|+++..|+++++...                   +....+...                      
T Consensus       195 ~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~-------------------~~~~~~~~~----------------------  233 (491)
T PRK10982        195 EEIFQLCDEITILRDGQWIATQPLAGLTMD-------------------KIIAMMVGR----------------------  233 (491)
T ss_pred             HHHHHhCCEEEEEECCEEEeecChhhCCHH-------------------HHHHHHhCC----------------------
Confidence            999999999999999999988776542100                   000000000                      


Q ss_pred             CccchhhhhhhHHHHHHHHHHHHhhhhheeeccCCeeeeeeccchhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy7366         231 GKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNGTRLVAVNIWAWRIIGKNLTCMACHGALYSAINLSIEYKVFSRCFT  310 (566)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (566)
                                                                                                      
T Consensus       234 --------------------------------------------------------------------------------  233 (491)
T PRK10982        234 --------------------------------------------------------------------------------  233 (491)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCCCCCCcchhHHHHHHhhhcCCCCCCeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHH
Q psy7366         311 RSNLHPVPVSLEEDDVRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFK  390 (566)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~  390 (566)
                        .   ... ..+.     .    .......+|+++|+++.+      +.+|+++||+|++||++||+||||||||||++
T Consensus       234 --~---~~~-~~~~-----~----~~~~~~~~i~~~~l~~~~------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~  292 (491)
T PRK10982        234 --S---LTQ-RFPD-----K----ENKPGEVILEVRNLTSLR------QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVE  292 (491)
T ss_pred             --C---ccc-cccc-----c----cCCCCCcEEEEeCccccc------CcccceeeEEEeCCcEEEEecCCCCCHHHHHH
Confidence              0   000 0000     0    000112369999998863      24899999999999999999999999999999


Q ss_pred             HHHCCCCCCccEEEEcCccCCCc--hHHhcCceEEEecCC---CCCCCCCHHHHHHH-----HHHhcCC-CchHHHHHHH
Q psy7366         391 MLTGAIKPTSGNAYVMNHSIRDS--MDLVRSYIGYCPQFD---ALNDRLTPREHLEF-----YSRVRNV-PSVLLNTIVN  459 (566)
Q Consensus       391 ~i~G~~~~~~G~i~~~g~~~~~~--~~~~~~~i~~v~q~~---~l~~~~tv~e~l~~-----~~~~~~~-~~~~~~~~~~  459 (566)
                      +|+|+.+|++|+|+++|+++...  ....++.++|+||++   .+++++|+.+|..+     .....+. ......+.+.
T Consensus       293 ~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (491)
T PRK10982        293 TLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQ  372 (491)
T ss_pred             HHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHH
Confidence            99999999999999999887542  233467799999984   47888888877322     1111121 2233455678


Q ss_pred             HHHHHcCCC-CccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHH
Q psy7366         460 ESLNKFALG-HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME  538 (566)
Q Consensus       460 ~~l~~~~l~-~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~  538 (566)
                      ++++.+++. +..++++.+|||||||||+|||||+.+|+||||||||+|||+.+++.++++|+++.++|.|||++|||++
T Consensus       373 ~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~  452 (491)
T PRK10982        373 WVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMP  452 (491)
T ss_pred             HHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChH
Confidence            899999995 5679999999999999999999999999999999999999999999999999999888999999999999


Q ss_pred             HHHhhCCEEEEEECCEEEEecCccc
Q psy7366         539 ECEALCTKLTIMVNGQFTCLGSATH  563 (566)
Q Consensus       539 ~~~~~~drv~~l~~G~i~~~g~~~~  563 (566)
                      ++..+|||+++|++|+++..++.++
T Consensus       453 ~~~~~~d~v~~l~~g~i~~~~~~~~  477 (491)
T PRK10982        453 ELLGITDRILVMSNGLVAGIVDTKT  477 (491)
T ss_pred             HHHhhCCEEEEEECCEEEEEEcccc
Confidence            9999999999999999998876543

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=100.00  E-value=4.6e-73  Score=565.80  Aligned_cols=429  Identities=24%  Similarity=0.331  Sum_probs=355.6

Q ss_pred             CCcchHHHHHhccccCCCccCCCCCc----------cc-----ccccceeEEcCCC--CCCCCCCHHHHHHHHHHh-cCC
Q psy7366           1 MGLTTTPKRVVTLLLTTQKVPGSNPT----------ID-----KNLSYIGYCPQFD--ALNDRLTPREHLEFYSRV-RNV   62 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~~~~~~~~----------~~-----~~~~~ig~v~Q~~--~l~~~~tv~e~l~~~~~~-~~~   62 (566)
                      +|||-|.+++++++-....+..++..          .+     -+..+|+|+||+|  +|.|-.|+...+.-.... +++
T Consensus        47 SGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~  126 (534)
T COG4172          47 SGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGL  126 (534)
T ss_pred             CCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcc
Confidence            59999999999998653322222110          00     1234799999999  677888999888766554 578


Q ss_pred             ChhhHHHHHHHHHHHcCCCc---ccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy7366          63 PSVLLNTIVNESLNKFALGH---YSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE  139 (566)
Q Consensus        63 ~~~~~~~~~~~~l~~~gl~~---~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~  139 (566)
                      +..+.++++-++|+.+|+.+   .++.++++|||||||||+||.||+.+|++||-||||++||..-+.++.++|++|.++
T Consensus       127 ~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~  206 (534)
T COG4172         127 SRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAE  206 (534)
T ss_pred             cHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHH
Confidence            89999999999999999985   468999999999999999999999999999999999999999999999999999655


Q ss_pred             -CCEEEEecCChhHHHhhcCEEEEEeCCEEEEecChhHHHhhccCccccCCCCCCCCccchhHHHhhccCCCCccccCCC
Q psy7366         140 -GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKSMALPVSGNDLGRGDPVRSELSRALNDGSGSGIRNSAR  218 (566)
Q Consensus       140 -g~tviiisH~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (566)
                       |.++++||||+.-+..++|||+||++|++++.|..+++.+... +|+.               +.+-..          
T Consensus       207 ~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~t~~lF~~Pq-HpYT---------------r~Ll~a----------  260 (534)
T COG4172         207 LGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFAAPQ-HPYT---------------RKLLAA----------  260 (534)
T ss_pred             hCcEEEEEeccHHHHHHhhhhEEEEeccEEeecCcHHHHhhCCC-ChHH---------------HHHHhc----------
Confidence             9999999999999999999999999999999999888765321 1110               000000          


Q ss_pred             cccccccccccCCccchhhhhhhHHHHHHHHHHHHhhhhheeeccCCeeeeeeccchhhchHHHHHHHHHHHHHHHHHHH
Q psy7366         219 PEVSGFYNENIDGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNGTRLVAVNIWAWRIIGKNLTCMACHGALYSAINL  298 (566)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (566)
                                                                                                      
T Consensus       261 --------------------------------------------------------------------------------  260 (534)
T COG4172         261 --------------------------------------------------------------------------------  260 (534)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHhhhhcccccCCCCCCCcchhHHHHHHhhhcCCCCCCeEEEeeeEEEeCCcCC-------CcceeeeeeEEEeC
Q psy7366         299 SIEYKVFSRCFTRSNLHPVPVSLEEDDVRKERERVEHGADSGDVLVVKRLFKIYANSKG-------TKPAVNQISFGVGR  371 (566)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~-------~~~~l~~isl~i~~  371 (566)
                                             ++.     ......+......++++++...|.-..|       ...+++++||++++
T Consensus       261 -----------------------eP~-----g~~~p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~  312 (534)
T COG4172         261 -----------------------EPS-----GDPPPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRR  312 (534)
T ss_pred             -----------------------CCC-----CCCCCCCCCCCceEEecceEEEEecCCccccccchheEEeccceeEecC
Confidence                                   000     0000001112346888898888854221       24589999999999


Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC----chHHhcCceEEEecCC--CCCCCCCHHHHHHHHHH
Q psy7366         372 GECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD----SMDLVRSYIGYCPQFD--ALNDRLTPREHLEFYSR  445 (566)
Q Consensus       372 Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~----~~~~~~~~i~~v~q~~--~l~~~~tv~e~l~~~~~  445 (566)
                      |+.+||+|.+|||||||-.+|.+++++. |+|.|+|+++..    ....+|+++-.|||||  ++.|.|||.+.|.-+..
T Consensus       313 gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~  391 (534)
T COG4172         313 GQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLR  391 (534)
T ss_pred             CCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhh
Confidence            9999999999999999999999999886 999999999964    2345788999999998  48999999999988776


Q ss_pred             hcC--CCchHHHHHHHHHHHHcCCC-CccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy7366         446 VRN--VPSVLLNTIVNESLNKFALG-HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER  522 (566)
Q Consensus       446 ~~~--~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~  522 (566)
                      .+.  .+..+..+++.++|+.+||+ ...+++|.++|||||||++|||||+.+|++++||||||+||...+.++.++|++
T Consensus       392 vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~  471 (534)
T COG4172         392 VHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRD  471 (534)
T ss_pred             hcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHH
Confidence            653  44556677899999999997 467999999999999999999999999999999999999999999999999999


Q ss_pred             HHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         523 AVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       523 ~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      ++++ |.+-++||||+..+..+||+|+||++|+|+++|+.+++
T Consensus       472 LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~~~~i  514 (534)
T COG4172         472 LQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAV  514 (534)
T ss_pred             HHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeCCHHHH
Confidence            9866 99999999999999999999999999999999998765

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=100.00  E-value=2.4e-72  Score=613.85  Aligned_cols=420  Identities=20%  Similarity=0.281  Sum_probs=323.1

Q ss_pred             CCcchHHHHHhccccCCCc---cCCCCCcc---cccccceeEEcCCCCCC---C-----CCCHHHHHHHHHHhcCCChhh
Q psy7366           1 MGLTTTPKRVVTLLLTTQK---VPGSNPTI---DKNLSYIGYCPQFDALN---D-----RLTPREHLEFYSRVRNVPSVL   66 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~---~~~~~~~~---~~~~~~ig~v~Q~~~l~---~-----~~tv~e~l~~~~~~~~~~~~~   66 (566)
                      .||||++|+++|++.+++.   +.+.....   ......+||++|++.+.   .     .+||.|++.+.        ..
T Consensus        40 sGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~--------~~  111 (490)
T PRK10938         40 SGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE--------VK  111 (490)
T ss_pred             CCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceeccCcchhhcccchhhccccHHHhcccc--------hh
Confidence            5999999999999876541   22221111   11124599999987531   1     46888877532        12


Q ss_pred             HHHHHHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEe
Q psy7366          67 LNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILT  146 (566)
Q Consensus        67 ~~~~~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviii  146 (566)
                      .++++.++++.+||+...++++.+||||||||++||+||+.+|++|||||||++||+.+++++.++|++++++|.|||++
T Consensus       112 ~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~  191 (490)
T PRK10938        112 DPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLV  191 (490)
T ss_pred             HHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEE
Confidence            35678899999999988899999999999999999999999999999999999999999999999999998789999999


Q ss_pred             cCChhHHHhhcCEEEEEeCCEEEEecChhHHHhhccCccccCCCCCCCCccchhHHHhhccCCCCccccCCCcccccccc
Q psy7366         147 SHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKSMALPVSGNDLGRGDPVRSELSRALNDGSGSGIRNSARPEVSGFYN  226 (566)
Q Consensus       147 sH~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (566)
                      ||+++++.++||+|++|++|+++..|+++++.....                  .. .+.....  ....          
T Consensus       192 tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~------------------~~-~~~~~~~--~~~~----------  240 (490)
T PRK10938        192 LNRFDEIPDFVQFAGVLADCTLAETGEREEILQQAL------------------VA-QLAHSEQ--LEGV----------  240 (490)
T ss_pred             eCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhcchh------------------hh-hhhhhhc--cCcc----------
Confidence            999999999999999999999999988876532100                  00 0000000  0000          


Q ss_pred             cccCCccchhhhhhhHHHHHHHHHHHHhhhhheeeccCCeeeeeeccchhhchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7366         227 ENIDGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNGTRLVAVNIWAWRIIGKNLTCMACHGALYSAINLSIEYKVFS  306 (566)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (566)
                                                                                                      
T Consensus       241 --------------------------------------------------------------------------------  240 (490)
T PRK10938        241 --------------------------------------------------------------------------------  240 (490)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhcccccCCCCCCCcchhHHHHHHhhhcCCCCCCeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHH
Q psy7366         307 RCFTRSNLHPVPVSLEEDDVRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKT  386 (566)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKS  386 (566)
                               ..+..... ..  ..    .......+++++|+++.|+    ++.+|+|+||+|++||+++|+||||||||
T Consensus       241 ---------~~~~~~~~-~~--~~----~~~~~~~~l~~~~l~~~~~----~~~il~~vsl~i~~Ge~~~i~G~NGsGKS  300 (490)
T PRK10938        241 ---------QLPEPDEP-SA--RH----ALPANEPRIVLNNGVVSYN----DRPILHNLSWQVNPGEHWQIVGPNGAGKS  300 (490)
T ss_pred             ---------ccCccccc-cc--cc----ccCCCCceEEEeceEEEEC----CeeEEeeceEEEcCCCEEEEECCCCCCHH
Confidence                     00000000 00  00    0001234799999999996    45699999999999999999999999999


Q ss_pred             HHHHHHHCCCCC-CccEEEEcCccCCC--chHHhcCceEEEecCCCCCC--CCCHHHHHHHHHH----hcCCCchHHHHH
Q psy7366         387 TTFKMLTGAIKP-TSGNAYVMNHSIRD--SMDLVRSYIGYCPQFDALND--RLTPREHLEFYSR----VRNVPSVLLNTI  457 (566)
Q Consensus       387 TLl~~i~G~~~~-~~G~i~~~g~~~~~--~~~~~~~~i~~v~q~~~l~~--~~tv~e~l~~~~~----~~~~~~~~~~~~  457 (566)
                      ||+|+|+|+.+| ++|+|+++|+++..  .....+++++|++|++.++.  ..++.+++.+...    .........++.
T Consensus       301 TLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (490)
T PRK10938        301 TLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKL  380 (490)
T ss_pred             HHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHH
Confidence            999999998876 69999999987632  22234668999999876543  3467666543211    111112223456


Q ss_pred             HHHHHHHcCCCC-ccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-cEEEEEcc
Q psy7366         458 VNESLNKFALGH-YSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEG-RCVILTSH  535 (566)
Q Consensus       458 ~~~~l~~~~l~~-~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g-~tvl~vsH  535 (566)
                      +.++++.+++.+ ..++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.++++|+++++++ .|||++||
T Consensus       381 ~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsH  460 (490)
T PRK10938        381 AQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSH  460 (490)
T ss_pred             HHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEec
Confidence            889999999987 8899999999999999999999999999999999999999999999999999998775 57999999


Q ss_pred             CHHHHHh-hCCEEEEEECCEEEEec
Q psy7366         536 NMEECEA-LCTKLTIMVNGQFTCLG  559 (566)
Q Consensus       536 d~~~~~~-~~drv~~l~~G~i~~~g  559 (566)
                      |++++.. +||++++|++|+++..-
T Consensus       461 d~~~~~~~~~d~v~~l~~G~i~~~~  485 (490)
T PRK10938        461 HAEDAPACITHRLEFVPDGDIYRYV  485 (490)
T ss_pred             chhhhhhhhheeEEEecCCceEEee
Confidence            9999987 59999999999987654

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.5e-71  Score=582.39  Aligned_cols=419  Identities=24%  Similarity=0.322  Sum_probs=348.7

Q ss_pred             CCcchHHHHHhccccCCC--------ccCCCCCcccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcC----CChhhHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ--------KVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRN----VPSVLLN   68 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~--------~~~~~~~~~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~----~~~~~~~   68 (566)
                      .||||++|.+.|++.|+.        ++...++. ++...+|++|+|++.+++++||.||+.++.+...    +++..+.
T Consensus        45 AGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~-~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~  123 (500)
T COG1129          45 AGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPR-DALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMR  123 (500)
T ss_pred             CCHHHHHHHHhCcccCCCceEEECCEEccCCCHH-HHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHH
Confidence            499999999999998777        23333333 3455789999999999999999999987665432    6788899


Q ss_pred             HHHHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecC
Q psy7366          69 TIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH  148 (566)
Q Consensus        69 ~~~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH  148 (566)
                      +++.++|+.+|+...+++++.+||.||||.|+||+||..+++|||||||||+|++...+.|++++++|+++|.+||+|||
T Consensus       124 ~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISH  203 (500)
T COG1129         124 RRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISH  203 (500)
T ss_pred             HHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcC
Confidence            99999999999976699999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChhHHHhhcCEEEEEeCCEEEEecCh-hHHHhhccCccccCCCCCCCCccchhHHHhhccCCCCccccCCCccccccccc
Q psy7366         149 NMEECEALCTKLTIMVNGQFTCLGSA-THLKSKSMALPVSGNDLGRGDPVRSELSRALNDGSGSGIRNSARPEVSGFYNE  227 (566)
Q Consensus       149 ~~~~~~~~~d~i~vl~~G~i~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (566)
                      +++|+.++||||+||++|+++...+. .++.                   ..++.+.+.+..                  
T Consensus       204 rl~Ei~~i~DritVlRDG~~v~~~~~~~~~~-------------------~~~lv~~MvGr~------------------  246 (500)
T COG1129         204 RLDEVFEIADRITVLRDGRVVGTRPTAAETS-------------------EDELVRLMVGRE------------------  246 (500)
T ss_pred             cHHHHHHhcCEEEEEeCCEEeeecccccCCC-------------------HHHHHHHhhCcc------------------
Confidence            99999999999999999999976652 3211                   111111111100                  


Q ss_pred             ccCCccchhhhhhhHHHHHHHHHHHHhhhhheeeccCCeeeeeeccchhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy7366         228 NIDGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNGTRLVAVNIWAWRIIGKNLTCMACHGALYSAINLSIEYKVFSR  307 (566)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (566)
                                                                             +                        
T Consensus       247 -------------------------------------------------------~------------------------  247 (500)
T COG1129         247 -------------------------------------------------------L------------------------  247 (500)
T ss_pred             -------------------------------------------------------h------------------------
Confidence                                                                   0                        


Q ss_pred             hhcccccCCCCCCCcchhHHHHHHhhhcCCCCCCeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHH
Q psy7366         308 CFTRSNLHPVPVSLEEDDVRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTT  387 (566)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKST  387 (566)
                                    ...   ... . .........+++++++..        ..++|+||++++|||+||.|-=|||+|.
T Consensus       248 --------------~~~---~~~-~-~~~~~~~~~l~v~~l~~~--------~~~~dvSf~vr~GEIlGiaGLvGaGRTE  300 (500)
T COG1129         248 --------------EDL---FPE-P-PEEGIGEPVLEVRNLSGG--------GKVRDVSFTVRAGEILGIAGLVGAGRTE  300 (500)
T ss_pred             --------------hhh---ccc-c-cccCCCCcEEEEecCCCC--------CceeCceeEEeCCcEEEEeccccCCHHH
Confidence                          000   000 0 000112346889998642        2589999999999999999999999999


Q ss_pred             HHHHHHCCCCCCccEEEEcCccCCC--chHHhcCceEEEecCC---CCCCCCCHHHHHHHHH--Hhc---CCCchHHHHH
Q psy7366         388 TFKMLTGAIKPTSGNAYVMNHSIRD--SMDLVRSYIGYCPQFD---ALNDRLTPREHLEFYS--RVR---NVPSVLLNTI  457 (566)
Q Consensus       388 Ll~~i~G~~~~~~G~i~~~g~~~~~--~~~~~~~~i~~v~q~~---~l~~~~tv~e~l~~~~--~~~---~~~~~~~~~~  457 (566)
                      |+++|.|..++.+|+|.++|+++..  +....+..|+|||.|.   .++..++|.+|+.+..  .+.   -+......+.
T Consensus       301 l~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~  380 (500)
T COG1129         301 LARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERAL  380 (500)
T ss_pred             HHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHH
Confidence            9999999999999999999998753  4567888999999984   6899999999998762  111   1344455667


Q ss_pred             HHHHHHHcCCC-CccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccC
Q psy7366         458 VNESLNKFALG-HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN  536 (566)
Q Consensus       458 ~~~~l~~~~l~-~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd  536 (566)
                      ++++.+.+++. ...+.++.+||||+||||.|||+|+.+|++|||||||.|+|..++.+|+++|++++++|++||++|.+
T Consensus       381 ~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSE  460 (500)
T COG1129         381 AERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSE  460 (500)
T ss_pred             HHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCC
Confidence            88999999996 56789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCEEEEEECCEEEEecCccc
Q psy7366         537 MEECEALCTKLTIMVNGQFTCLGSATH  563 (566)
Q Consensus       537 ~~~~~~~~drv~~l~~G~i~~~g~~~~  563 (566)
                      ++|+..+||||+||++|+++.+-+.++
T Consensus       461 lpEll~~~DRIlVm~~Gri~~e~~~~~  487 (500)
T COG1129         461 LPELLGLSDRILVMREGRIVGELDREE  487 (500)
T ss_pred             hHHHHhhCCEEEEEECCEEEEEecccc
Confidence            999999999999999999998765543

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.9e-70  Score=599.44  Aligned_cols=447  Identities=21%  Similarity=0.271  Sum_probs=322.1

Q ss_pred             CCcchHHHHHhccccCCCccCCCCCcccccccceeEEcCCCCCCCCCCHHHHHHHHHHh-----------cCC-------
Q psy7366           1 MGLTTTPKRVVTLLLTTQKVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRV-----------RNV-------   62 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~-----------~~~-------   62 (566)
                      .||||++|+++|++.+++   |.-  .-.....|||++|++.+++.+||.||+.+....           .+.       
T Consensus        38 sGKSTLl~~l~Gl~~p~~---G~i--~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (530)
T PRK15064         38 CGKSTFMKILGGDLEPSA---GNV--SLDPNERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEED  112 (530)
T ss_pred             CCHHHHHHHHhCCCCCCC---ceE--EecCCCEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccch
Confidence            599999999999986643   111  001123599999999999999999999764210           000       


Q ss_pred             --------------ChhhHHHHHHHHHHHcCCCcc-cccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHH
Q psy7366          63 --------------PSVLLNTIVNESLNKFALGHY-SDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARR  127 (566)
Q Consensus        63 --------------~~~~~~~~~~~~l~~~gl~~~-~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~  127 (566)
                                    ...+.+.++.++++.+|+... .++++.+||||||||++||+||+.+|+||||||||++||+.++.
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~  192 (530)
T PRK15064        113 GMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIR  192 (530)
T ss_pred             HHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHH
Confidence                          011234678899999999764 46789999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCEEEEecCChhHHHhhcCEEEEEeCCEEE-EecChhHHHhhccCccccCCCCCCCCccchhHHHhhc
Q psy7366         128 FLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFT-CLGSATHLKSKSMALPVSGNDLGRGDPVRSELSRALN  206 (566)
Q Consensus       128 ~l~~~l~~l~~~g~tviiisH~~~~~~~~~d~i~vl~~G~i~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (566)
                      +|.++|++   .|.|||+||||++++.++||||++|++|+++ +.|+++++.......             .........
T Consensus       193 ~l~~~l~~---~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~~~~~-------------~~~~~~~~~  256 (530)
T PRK15064        193 WLEDVLNE---RNSTMIIISHDRHFLNSVCTHMADLDYGELRVYPGNYDEYMTAATQA-------------RERLLADNA  256 (530)
T ss_pred             HHHHHHHh---CCCeEEEEeCCHHHHHhhcceEEEEeCCEEEEecCCHHHHHHHHHHH-------------HHHHHHHHH
Confidence            99999863   5899999999999999999999999999994 788888764311000             000000000


Q ss_pred             cCCCCccccCCCcccccccccccCCccchhhhhhhHHHHHHHHHHHHhhhhheeeccCCeeeeeeccchhhchHHHHHHH
Q psy7366         207 DGSGSGIRNSARPEVSGFYNENIDGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNGTRLVAVNIWAWRIIGKNLTCM  286 (566)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (566)
                      ..                               ...+-       ....+....   .        .+            
T Consensus       257 ~~-------------------------------~~~~~-------~~~~~~~~~---~--------~~------------  275 (530)
T PRK15064        257 KK-------------------------------KAQIA-------ELQSFVSRF---S--------AN------------  275 (530)
T ss_pred             HH-------------------------------HHHHH-------HHHHHHHHh---h--------cc------------
Confidence            00                               00000       000000000   0        00            


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCcchhHHHHHHhhh-cCCCCCCeEEEeeeEEEeCCcCCCcceeeee
Q psy7366         287 ACHGALYSAINLSIEYKVFSRCFTRSNLHPVPVSLEEDDVRKERERVE-HGADSGDVLVVKRLFKIYANSKGTKPAVNQI  365 (566)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l~~~y~~~~~~~~~l~~i  365 (566)
                      ...     ........+..    ................    ..... .......+++++|+++.|+    ++.+|+++
T Consensus       276 ~~~-----~~~~~~~~~~~----~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~----~~~~l~~i  338 (530)
T PRK15064        276 ASK-----AKQATSRAKQI----DKIKLEEVKPSSRQNP----FIRFEQDKKLHRNALEVENLTKGFD----NGPLFKNL  338 (530)
T ss_pred             chh-----hHHHHHHHHHH----hhccccccCCccccCc----eeeCCCCCCCCCceEEEEeeEEeeC----CceeecCc
Confidence            000     00000000000    0000000000000000    00000 0011224799999999996    45699999


Q ss_pred             eEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCC--CCCCCCHHHHHHHH
Q psy7366         366 SFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDA--LNDRLTPREHLEFY  443 (566)
Q Consensus       366 sl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~--l~~~~tv~e~l~~~  443 (566)
                      ||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.          .++||+||++.  +++.+|+.+|+.+.
T Consensus       339 s~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~----------~~i~~~~q~~~~~~~~~~t~~~~~~~~  408 (530)
T PRK15064        339 NLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN----------ANIGYYAQDHAYDFENDLTLFDWMSQW  408 (530)
T ss_pred             EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc----------eEEEEEcccccccCCCCCcHHHHHHHh
Confidence            9999999999999999999999999999999999999999873          36999999964  56678999998643


Q ss_pred             HHhcCCCchHHHHHHHHHHHHcCCC-CccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy7366         444 SRVRNVPSVLLNTIVNESLNKFALG-HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER  522 (566)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~  522 (566)
                      ..    .. ..++.+.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.+++.|++
T Consensus       409 ~~----~~-~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  483 (530)
T PRK15064        409 RQ----EG-DDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEK  483 (530)
T ss_pred             cc----CC-ccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence            11    11 1235578899999995 678999999999999999999999999999999999999999999999999987


Q ss_pred             HHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEE-EecCcccc
Q psy7366         523 AVSEGRCVILTSHNMEECEALCTKLTIMVNGQFT-CLGSATHL  564 (566)
Q Consensus       523 ~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~-~~g~~~~l  564 (566)
                      +   +.|||++|||++++..+|||+++|++|+++ +.|+++++
T Consensus       484 ~---~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~  523 (530)
T PRK15064        484 Y---EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEY  523 (530)
T ss_pred             C---CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHH
Confidence            6   469999999999999999999999999998 77887664

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=9.4e-70  Score=600.64  Aligned_cols=447  Identities=21%  Similarity=0.267  Sum_probs=320.7

Q ss_pred             CCcchHHHHHhccccCCCccCCCCCcccccccceeEEcCCCCCCCCCCHHHHHHHHHH-h-------------cCCC---
Q psy7366           1 MGLTTTPKRVVTLLLTTQKVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSR-V-------------RNVP---   63 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~-~-------------~~~~---   63 (566)
                      .||||++|+++|++.|+.   |.-  .-.....||||||+|.+++.+||.||+.+... .             ....   
T Consensus        44 sGKSTLlk~i~G~~~p~~---G~i--~~~~~~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (556)
T PRK11819         44 AGKSTLLRIMAGVDKEFE---GEA--RPAPGIKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDAD  118 (556)
T ss_pred             CCHHHHHHHHhCCCCCCC---ceE--EecCCCEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchh
Confidence            599999999999986643   211  01112469999999999999999999986421 0             0111   


Q ss_pred             -------------------hhhHHHHHHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHH
Q psy7366          64 -------------------SVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPG  124 (566)
Q Consensus        64 -------------------~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~  124 (566)
                                         ..+...++.++++.+|+.. .++++.+|||||||||+||+||+.+|++||||||||+||+.
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~  197 (556)
T PRK11819        119 FDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP-WDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAE  197 (556)
T ss_pred             hHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc-ccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChH
Confidence                               0123567889999999964 79999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCEEEEecCChhHHHhhcCEEEEEeCCEEE-EecChhHHHhhccCccccCCCCCCCCccchhHHH
Q psy7366         125 ARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFT-CLGSATHLKSKSMALPVSGNDLGRGDPVRSELSR  203 (566)
Q Consensus       125 ~~~~l~~~l~~l~~~g~tviiisH~~~~~~~~~d~i~vl~~G~i~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (566)
                      ++.++.++|+++   +.|||+||||++++..+||+|++|++|+++ +.|+++++......                ....
T Consensus       198 ~~~~l~~~L~~~---~~tviiisHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~~~~----------------~~~~  258 (556)
T PRK11819        198 SVAWLEQFLHDY---PGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSSWLEQKAK----------------RLAQ  258 (556)
T ss_pred             HHHHHHHHHHhC---CCeEEEEeCCHHHHHhhcCeEEEEeCCEEEEecCCHHHHHHHHHH----------------HHHH
Confidence            999999999876   359999999999999999999999999986 77888775432100                0000


Q ss_pred             hhccCCCCccccCCCcccccccccccCCccchhhhhhhHHHHHHHHHHHHhhhhheeeccCCeeeeeeccchhhchHHHH
Q psy7366         204 ALNDGSGSGIRNSARPEVSGFYNENIDGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNGTRLVAVNIWAWRIIGKNL  283 (566)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (566)
                      .....           +                 .....+.       ....+.+                      .  
T Consensus       259 ~~~~~-----------~-----------------~~~~~~~-------~~~~~~~----------------------~--  279 (556)
T PRK11819        259 EEKQE-----------A-----------------ARQKALK-------RELEWVR----------------------Q--  279 (556)
T ss_pred             HHHHH-----------H-----------------HHHHHHH-------HHHHHHH----------------------H--
Confidence            00000           0                 0000000       0000000                      0  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCcchhHHHHHHhhhcCCCCCCeEEEeeeEEEeCCcCCCcceee
Q psy7366         284 TCMACHGALYSAINLSIEYKVFSRCFTRSNLHPVPVSLEEDDVRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVN  363 (566)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~~~~~l~  363 (566)
                         .....  ........ ..+....   ...... .......   .. .........+++++|+++.|+    ++.+|+
T Consensus       280 ---~~~~~--~~~~~~~~-~~~~~~~---~~~~~~-~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~~~----~~~~l~  341 (556)
T PRK11819        280 ---SPKAR--QAKSKARL-ARYEELL---SEEYQK-RNETNEI---FI-PPGPRLGDKVIEAENLSKSFG----DRLLID  341 (556)
T ss_pred             ---hhhhh--HHHHHHHH-HHHHHhh---cccccc-cCCCcee---ec-CCCCCCCCeEEEEEeEEEEEC----Ceeeec
Confidence               00000  00000000 0000000   000000 0000000   00 000011234799999999996    467999


Q ss_pred             eeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCC-CCCCCCCHHHHHHH
Q psy7366         364 QISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFD-ALNDRLTPREHLEF  442 (566)
Q Consensus       364 ~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~-~l~~~~tv~e~l~~  442 (566)
                      |+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ ++         ++||+||++ .+++.+|+.||+.+
T Consensus       342 ~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~~---------~i~~v~q~~~~~~~~~tv~e~l~~  411 (556)
T PRK11819        342 DLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-TV---------KLAYVDQSRDALDPNKTVWEEISG  411 (556)
T ss_pred             ceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-ce---------EEEEEeCchhhcCCCCCHHHHHHh
Confidence            99999999999999999999999999999999999999999944 21         599999996 68888999999987


Q ss_pred             HHHhcCCCchHHHHHHHHHHHHcCCCC-ccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy7366         443 YSRVRNVPSVLLNTIVNESLNKFALGH-YSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIE  521 (566)
Q Consensus       443 ~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~  521 (566)
                      ..........  ...+..+++.+++.. ..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|.
T Consensus       412 ~~~~~~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~  489 (556)
T PRK11819        412 GLDIIKVGNR--EIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALL  489 (556)
T ss_pred             hccccccccc--HHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHH
Confidence            5432222211  223457899999964 5799999999999999999999999999999999999999999999999998


Q ss_pred             HHHhCCcEEEEEccCHHHHHhhCCEEEEEEC-CEEE-EecCcccc
Q psy7366         522 RAVSEGRCVILTSHNMEECEALCTKLTIMVN-GQFT-CLGSATHL  564 (566)
Q Consensus       522 ~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~-G~i~-~~g~~~~l  564 (566)
                      ++.   .|||++|||++++..+||++++|++ |++. ..|+.+++
T Consensus       490 ~~~---~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~  531 (556)
T PRK11819        490 EFP---GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEY  531 (556)
T ss_pred             hCC---CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHH
Confidence            872   4899999999999999999999986 7876 46665543

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=100.00  E-value=7.8e-69  Score=640.89  Aligned_cols=243  Identities=56%  Similarity=0.950  Sum_probs=218.1

Q ss_pred             CcchhHHHHHHhhhcCCCCCCeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCc
Q psy7366         321 LEEDDVRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS  400 (566)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~  400 (566)
                      .++.++..++.++.......++|+++|++|.|+.  +.+.+|+|+||+|++||++||+||||||||||+|+|+|+++|++
T Consensus      1916 ~eD~DV~~Er~rV~~~~~~~~~L~v~nLsK~Y~~--~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~pts 1993 (2272)
T TIGR01257      1916 DEDDDVAEERQRIISGGNKTDILRLNELTKVYSG--TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTS 1993 (2272)
T ss_pred             CchhHHHHHHHHHhccCCCCceEEEEEEEEEECC--CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCc
Confidence            3456677777776554455678999999999962  12579999999999999999999999999999999999999999


Q ss_pred             cEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCCh
Q psy7366         401 GNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSG  480 (566)
Q Consensus       401 G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSg  480 (566)
                      |+|+++|+++.......++.|||+||++.+++.+|++||+.++...++.+....++.++++++.++|.+..++++++|||
T Consensus      1994 G~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSG 2073 (2272)
T TIGR01257      1994 GDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSG 2073 (2272)
T ss_pred             cEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCH
Confidence            99999999986544455678999999999999999999999887777766555566788999999999889999999999


Q ss_pred             hHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecC
Q psy7366         481 GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS  560 (566)
Q Consensus       481 Gqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~  560 (566)
                      ||||||+||+||+.+|+||||||||+||||.+++.++++|++++++|+|||++||++++++.+|||+++|++|++++.|+
T Consensus      2074 GqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs 2153 (2272)
T TIGR01257      2074 GNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGT 2153 (2272)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence            99999999999999999999999999999999999999999998789999999999999999999999999999999999


Q ss_pred             ccccc
Q psy7366         561 ATHLK  565 (566)
Q Consensus       561 ~~~l~  565 (566)
                      +++++
T Consensus      2154 ~q~Lk 2158 (2272)
T TIGR01257      2154 IQHLK 2158 (2272)
T ss_pred             HHHHH
Confidence            98875

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=100.00  E-value=4.4e-69  Score=595.16  Aligned_cols=446  Identities=21%  Similarity=0.262  Sum_probs=318.3

Q ss_pred             CCcchHHHHHhccccCCCccCCCCCcccccccceeEEcCCCCCCCCCCHHHHHHHHHHh--------------cCCChh-
Q psy7366           1 MGLTTTPKRVVTLLLTTQKVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRV--------------RNVPSV-   65 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~--------------~~~~~~-   65 (566)
                      .||||++|+|+|++.|..   |.-  .-.....||||||++.+++.+||.||+.++...              ...+.. 
T Consensus        42 sGKSTLl~~i~G~~~p~~---G~i--~~~~~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (552)
T TIGR03719        42 AGKSTLLRIMAGVDKEFN---GEA--RPAPGIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDAD  116 (552)
T ss_pred             CCHHHHHHHHhCCCCCCC---ceE--EecCCCEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchh
Confidence            599999999999986643   211  011124699999999999999999999874211              011111 


Q ss_pred             ---------------------hHHHHHHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHH
Q psy7366          66 ---------------------LLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPG  124 (566)
Q Consensus        66 ---------------------~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~  124 (566)
                                           ...+++.++++.+|++. .++++.+|||||||||+||+||+.+|++|||||||++||+.
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~  195 (552)
T TIGR03719       117 MDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP-WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAE  195 (552)
T ss_pred             hHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc-ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChH
Confidence                                 12356778888999964 68899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCEEEEecCChhHHHhhcCEEEEEeCCEEE-EecChhHHHhhccCccccCCCCCCCCccchhHHH
Q psy7366         125 ARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFT-CLGSATHLKSKSMALPVSGNDLGRGDPVRSELSR  203 (566)
Q Consensus       125 ~~~~l~~~l~~l~~~g~tviiisH~~~~~~~~~d~i~vl~~G~i~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (566)
                      +++++.++|+++   +.|||+||||++++..+||+|++|++|+++ +.|+++++.+....                ....
T Consensus       196 ~~~~l~~~L~~~---~~tvIiisHd~~~~~~~~d~v~~l~~g~i~~~~g~~~~~~~~~~~----------------~~~~  256 (552)
T TIGR03719       196 SVAWLEQHLQEY---PGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSSWLEQKEK----------------RLEQ  256 (552)
T ss_pred             HHHHHHHHHHhC---CCeEEEEeCCHHHHHhhcCeEEEEECCEEEEecCCHHHHHHHHHH----------------HHHH
Confidence            999999999875   359999999999999999999999999976 77888876532100                0000


Q ss_pred             hhccCCCCccccCCCcccccccccccCCccchhhhhhhHHHHHHHHHHHHhhhhheeeccCCeeeeeeccchhhchHHHH
Q psy7366         204 ALNDGSGSGIRNSARPEVSGFYNENIDGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNGTRLVAVNIWAWRIIGKNL  283 (566)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (566)
                      .....             .               .....+.       ....+.+                      .. 
T Consensus       257 ~~~~~-------------~---------------~~~~~~~-------~~~~~~~----------------------~~-  278 (552)
T TIGR03719       257 EEKEE-------------S---------------ARQKALK-------RELEWVR----------------------SS-  278 (552)
T ss_pred             HHHHH-------------H---------------HHHHHHH-------HHHHHHH----------------------hh-
Confidence            00000             0               0000000       0000000                      00 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCcchhHHHHHHhhhcCCCCCCeEEEeeeEEEeCCcCCCcceee
Q psy7366         284 TCMACHGALYSAINLSIEYKVFSRCFTRSNLHPVPVSLEEDDVRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVN  363 (566)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~~~~~l~  363 (566)
                          ....  .+..... ...+.....    ..........   .... .........+++++|+++.|+    ++.+|+
T Consensus       279 ----~~~~--~~~~~~~-~~~~~~~~~----~~~~~~~~~~---~~~~-~~~~~~~~~~l~~~~l~~~~~----~~~~l~  339 (552)
T TIGR03719       279 ----PKAR--QAKSKAR-LARYEELLS----QEFQKRNETA---EIYI-PPGPRLGDKVIEAENLSKGFG----DKLLID  339 (552)
T ss_pred             ----hhhH--HHHHHHH-HHHHHhhhh----hcccccCCCc---eeec-CCCCCCCCeEEEEeeEEEEEC----Ceeeec
Confidence                0000  0000000 000000000    0000000000   0000 000011234799999999996    467999


Q ss_pred             eeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCC-CCCCCCCHHHHHHH
Q psy7366         364 QISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFD-ALNDRLTPREHLEF  442 (566)
Q Consensus       364 ~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~-~l~~~~tv~e~l~~  442 (566)
                      |+||+|++|++++|+||||||||||+++|+|+++|++|+|++++ ++         +|||+||++ .+++.+|+.||+.+
T Consensus       340 ~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~~---------~i~~v~q~~~~~~~~~tv~e~l~~  409 (552)
T TIGR03719       340 DLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-TV---------KLAYVDQSRDALDPNKTVWEEISG  409 (552)
T ss_pred             cceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-ce---------EEEEEeCCccccCCCCcHHHHHHh
Confidence            99999999999999999999999999999999999999999944 21         599999996 47888999999987


Q ss_pred             HHHhcCCCchHHHHHHHHHHHHcCCCC-ccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy7366         443 YSRVRNVPSVLLNTIVNESLNKFALGH-YSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIE  521 (566)
Q Consensus       443 ~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~  521 (566)
                      ..........  ...+.++++.+++.. ..++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.++++|+
T Consensus       410 ~~~~~~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~  487 (552)
T TIGR03719       410 GLDIIQLGKR--EVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALL  487 (552)
T ss_pred             hccccccCcc--hHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Confidence            5432222211  223567899999964 5799999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCcEEEEEccCHHHHHhhCCEEEEEEC-CEEE-EecCccc
Q psy7366         522 RAVSEGRCVILTSHNMEECEALCTKLTIMVN-GQFT-CLGSATH  563 (566)
Q Consensus       522 ~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~-G~i~-~~g~~~~  563 (566)
                      ++   +.|||+||||++++..+||++++|++ |++. ..|+.++
T Consensus       488 ~~---~~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~  528 (552)
T TIGR03719       488 EF---AGCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSE  528 (552)
T ss_pred             HC---CCeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHH
Confidence            87   24899999999999999999999987 5776 4565543

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.5e-68  Score=593.23  Aligned_cols=444  Identities=20%  Similarity=0.279  Sum_probs=311.4

Q ss_pred             CCcchHHHHHhccccCCCccCCCCCcccccccceeEEcCCCCCCCCCCHHHHHHHH-----------------------H
Q psy7366           1 MGLTTTPKRVVTLLLTTQKVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFY-----------------------S   57 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~-----------------------~   57 (566)
                      +||||++|+|+|++.|+.   |.  ........|||++|++..+ ..++.+++.-.                       .
T Consensus        38 sGKSTLLkiL~G~~~pd~---G~--I~~~~~~~i~~~~q~~~~~-~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~  111 (638)
T PRK10636         38 CGKSTLLALLKNEISADG---GS--YTFPGNWQLAWVNQETPAL-PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIA  111 (638)
T ss_pred             CCHHHHHHHHhCCCCCCC---ce--EEecCCCEEEEEecCCCCC-CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHH
Confidence            599999999999886654   21  1111123489999975333 24655544210                       0


Q ss_pred             Hh----cCCChhhHHHHHHHHHHHcCCC-cccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHH
Q psy7366          58 RV----RNVPSVLLNTIVNESLNKFALG-HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTC  132 (566)
Q Consensus        58 ~~----~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~  132 (566)
                      ..    ...+.++...++.++++.+|+. ...++++.+|||||||||+||+||+.+|+||||||||||||+.++.||.++
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~  191 (638)
T PRK10636        112 TIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKW  191 (638)
T ss_pred             HHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHH
Confidence            00    0011234456889999999997 578999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCEEEEecCChhHHHhhcCEEEEEeCCEEE-EecChhHHHhhccCccccCCCCCCCCccchhHHHhhccCCCC
Q psy7366         133 IERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFT-CLGSATHLKSKSMALPVSGNDLGRGDPVRSELSRALNDGSGS  211 (566)
Q Consensus       133 l~~l~~~g~tviiisH~~~~~~~~~d~i~vl~~G~i~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (566)
                      |+++   +.|||+||||++++..+||+|++|++|+++ +.|+++.........             ...........+ .
T Consensus       192 L~~~---~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~~~~~~~~~-------------~~~~~~~~~~~~-~  254 (638)
T PRK10636        192 LKSY---QGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNYSSFEVQRATR-------------LAQQQAMYESQQ-E  254 (638)
T ss_pred             HHhC---CCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEecCCHHHHHHHHHHH-------------HHHHHHHHHHHH-H
Confidence            9865   569999999999999999999999999996 578777654311000             000000000000 0


Q ss_pred             ccccCCCcccccccccccCCccchhhhhhhHHHHHHHHHHHHhhhhheeeccCCeeeeeeccchhhchHHHHHHHHHHHH
Q psy7366         212 GIRNSARPEVSGFYNENIDGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNGTRLVAVNIWAWRIIGKNLTCMACHGA  291 (566)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (566)
                      .++                                     ....|.+.+                       ...+....
T Consensus       255 ~~~-------------------------------------~~~~~i~r~-----------------------~~~a~~~~  274 (638)
T PRK10636        255 RVA-------------------------------------HLQSYIDRF-----------------------RAKATKAK  274 (638)
T ss_pred             HHH-------------------------------------HHHHHHHHh-----------------------hhhhhhHH
Confidence            000                                     000000000                       00000000


Q ss_pred             HHHHHHHHHHHHHHhhhhcccccCCCCCCCcchhHHHHHHhhhc-CCCCCCeEEEeeeEEEeCCcCCCcceeeeeeEEEe
Q psy7366         292 LYSAINLSIEYKVFSRCFTRSNLHPVPVSLEEDDVRKERERVEH-GADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVG  370 (566)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~l~~~y~~~~~~~~~l~~isl~i~  370 (566)
                        .+  .+.. +.+... .  ...  +.. .....   ...... ......+|+++|+++.|+    ++.+|+|+||+|.
T Consensus       275 --~a--~~r~-~~l~~~-~--~~~--~~~-~~~~~---~~~~~~~~~~~~~~l~~~~l~~~y~----~~~il~~isl~i~  336 (638)
T PRK10636        275 --QA--QSRI-KMLERM-E--LIA--PAH-VDNPF---HFSFRAPESLPNPLLKMEKVSAGYG----DRIILDSIKLNLV  336 (638)
T ss_pred             --HH--HHHH-HHHHHh-h--ccc--ccc-cCCce---eEecCCCccCCCceEEEEeeEEEeC----CeeeeccceEEEC
Confidence              00  0000 000000 0  000  000 00000   000000 011235799999999996    4679999999999


Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCC--CCCCCCCHHHHHHHHHHhcC
Q psy7366         371 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFD--ALNDRLTPREHLEFYSRVRN  448 (566)
Q Consensus       371 ~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~--~l~~~~tv~e~l~~~~~~~~  448 (566)
                      +|+++||+||||||||||||+|+|+++|++|+|.+++.          .++||++|+.  .+.+..|+.+++...   . 
T Consensus       337 ~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----------~~igy~~Q~~~~~l~~~~~~~~~~~~~---~-  402 (638)
T PRK10636        337 PGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG----------IKLGYFAQHQLEFLRADESPLQHLARL---A-  402 (638)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC----------EEEEEecCcchhhCCccchHHHHHHHh---C-
Confidence            99999999999999999999999999999999999742          2599999974  355667887775321   1 


Q ss_pred             CCchHHHHHHHHHHHHcCCC-CccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q psy7366         449 VPSVLLNTIVNESLNKFALG-HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEG  527 (566)
Q Consensus       449 ~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g  527 (566)
                        .......+.++++.|++. ...++++.+|||||||||+||++|+.+|++|||||||+|||+.++..+.++|.++   +
T Consensus       403 --~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~  477 (638)
T PRK10636        403 --PQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF---E  477 (638)
T ss_pred             --chhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---C
Confidence              112345678999999996 4689999999999999999999999999999999999999999999999999987   3


Q ss_pred             cEEEEEccCHHHHHhhCCEEEEEECCEEE-EecCcccc
Q psy7366         528 RCVILTSHNMEECEALCTKLTIMVNGQFT-CLGSATHL  564 (566)
Q Consensus       528 ~tvl~vsHd~~~~~~~~drv~~l~~G~i~-~~g~~~~l  564 (566)
                      .|||+||||++++..+||++++|++|+++ +.|+.++.
T Consensus       478 gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  515 (638)
T PRK10636        478 GALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDY  515 (638)
T ss_pred             CeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHH
Confidence            59999999999999999999999999997 67776654

>PRK13409 putative ATPase RIL; Provisional

Probab=100.00  E-value=9.2e-68  Score=583.61  Aligned_cols=405  Identities=23%  Similarity=0.297  Sum_probs=307.0

Q ss_pred             CCcchHHHHHhccccCCC-ccC-------------CCCCcc-----cccccceeEEcCCCCCCCC---CCHHHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ-KVP-------------GSNPTI-----DKNLSYIGYCPQFDALNDR---LTPREHLEFYSR   58 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~-~~~-------------~~~~~~-----~~~~~~ig~v~Q~~~l~~~---~tv~e~l~~~~~   58 (566)
                      +||||++|+++|++.|+. .+.             |.....     .....++++.+|...+++.   .||.|++.+.  
T Consensus       110 aGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~--  187 (590)
T PRK13409        110 IGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV--  187 (590)
T ss_pred             CCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeecccchhhhhhhhcchHHHHHHhh--
Confidence            699999999999998765 221             211110     0112346666776544432   3999998642  


Q ss_pred             hcCCChhhHHHHHHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHh
Q psy7366          59 VRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS  138 (566)
Q Consensus        59 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~  138 (566)
                             +...++.++++.+||+..+++++.+||||||||++||+||+.+|++|||||||++||+.++.++.++|+++++
T Consensus       188 -------~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~  260 (590)
T PRK13409        188 -------DERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE  260 (590)
T ss_pred             -------hHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC
Confidence                   2345788999999999889999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCEEEEecCChhHHHhhcCEEEEEeCCEEEEecChhHHHhhccCccccCCCCCCCCccchhHHHhhccCCCCccccCCC
Q psy7366         139 EGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKSMALPVSGNDLGRGDPVRSELSRALNDGSGSGIRNSAR  218 (566)
Q Consensus       139 ~g~tviiisH~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (566)
                       |+|||+||||++++..+||+|++|+++.-. .|....-..                 ........+....         
T Consensus       261 -g~tvIivsHd~~~l~~~~D~v~vl~~~~g~-~g~~~~~~~-----------------~~~~i~~~~~~~~---------  312 (590)
T PRK13409        261 -GKYVLVVEHDLAVLDYLADNVHIAYGEPGA-YGVVSKPKG-----------------VRVGINEYLKGYL---------  312 (590)
T ss_pred             -CCEEEEEeCCHHHHHHhCCEEEEEeCCccc-cceecchhH-----------------HHHhHHHHHHhcc---------
Confidence             999999999999999999999999864100 010000000                 0000000000000         


Q ss_pred             cccccccccccCCccchhhhhhhHHHHHHHHHHHHhhhhheeeccCCeeeeeeccchhhchHHHHHHHHHHHHHHHHHHH
Q psy7366         219 PEVSGFYNENIDGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNGTRLVAVNIWAWRIIGKNLTCMACHGALYSAINL  298 (566)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (566)
                                                                 ..                                  .
T Consensus       313 -------------------------------------------~~----------------------------------e  315 (590)
T PRK13409        313 -------------------------------------------PE----------------------------------E  315 (590)
T ss_pred             -------------------------------------------hh----------------------------------h
Confidence                                                       00                                  0


Q ss_pred             HHHHHHHhhhhcccccCCCCCCCcchhHHHHHHhhhcCCCCCCeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEE
Q psy7366         299 SIEYKVFSRCFTRSNLHPVPVSLEEDDVRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLL  378 (566)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~  378 (566)
                        ..+        .............         ........+++++|+++.|+    + ..|+++||+|++||+++|+
T Consensus       316 --~~~--------~~~~~~~~~~~~~---------~~~~~~~~~l~~~~ls~~~~----~-~~l~~~s~~i~~Geiv~l~  371 (590)
T PRK13409        316 --NMR--------IRPEPIEFEERPP---------RDESERETLVEYPDLTKKLG----D-FSLEVEGGEIYEGEVIGIV  371 (590)
T ss_pred             --hhh--------ccccCcceecCCC---------ccccCCceEEEEcceEEEEC----C-EEEEecceEECCCCEEEEE
Confidence              000        0000000000000         00001234799999999996    3 3599999999999999999


Q ss_pred             cCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHH
Q psy7366         379 GLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIV  458 (566)
Q Consensus       379 G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~  458 (566)
                      ||||||||||+|+|+|+++|++|+|.++   +         +++|+||++.+++.+||.||+.+.....  ..   ...+
T Consensus       372 G~NGsGKSTLlk~L~Gl~~p~~G~I~~~---~---------~i~y~~Q~~~~~~~~tv~e~l~~~~~~~--~~---~~~~  434 (590)
T PRK13409        372 GPNGIGKTTFAKLLAGVLKPDEGEVDPE---L---------KISYKPQYIKPDYDGTVEDLLRSITDDL--GS---SYYK  434 (590)
T ss_pred             CCCCCCHHHHHHHHhCCCCCCceEEEEe---e---------eEEEecccccCCCCCcHHHHHHHHhhhc--Ch---HHHH
Confidence            9999999999999999999999999885   1         5999999988888899999998653211  11   2346


Q ss_pred             HHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCH
Q psy7366         459 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNM  537 (566)
Q Consensus       459 ~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~  537 (566)
                      .++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|++++++ |+|||++|||+
T Consensus       435 ~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~  514 (590)
T PRK13409        435 SEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDI  514 (590)
T ss_pred             HHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            78999999998899999999999999999999999999999999999999999999999999999765 89999999999


Q ss_pred             HHHHhhCCEEEEEECCEEEEecCc
Q psy7366         538 EECEALCTKLTIMVNGQFTCLGSA  561 (566)
Q Consensus       538 ~~~~~~~drv~~l~~G~i~~~g~~  561 (566)
                      +++..+|||+++|++ ++...|+.
T Consensus       515 ~~~~~~aDrvivl~~-~~~~~g~~  537 (590)
T PRK13409        515 YMIDYISDRLMVFEG-EPGKHGHA  537 (590)
T ss_pred             HHHHHhCCEEEEEcC-cceeeeec
Confidence            999999999999964 77766653

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=100.00  E-value=3.9e-67  Score=539.29  Aligned_cols=424  Identities=24%  Similarity=0.333  Sum_probs=353.9

Q ss_pred             CCcchHHHHHhccccCCC--------ccCCCCCcccccccceeEEcCCCCCCCCCCHHHHHHHHHHhc---CCChhhHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ--------KVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVR---NVPSVLLNT   69 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~--------~~~~~~~~~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~   69 (566)
                      .||||+.|++.|++.|+.        ++...+|. ++.+.+||||+|++.|++.+||.||+..+.+..   .++.....+
T Consensus        41 AGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~-dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~  119 (501)
T COG3845          41 AGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPR-DAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARA  119 (501)
T ss_pred             CCHHHHHHHHhCcccCCcceEEECCEEeccCCHH-HHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHH
Confidence            499999999999998877        34444444 445678999999999999999999999887642   356778889


Q ss_pred             HHHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCC
Q psy7366          70 IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN  149 (566)
Q Consensus        70 ~~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~  149 (566)
                      +++++.+++||+.++++++.+||-|+||||+|.+||+++|++|||||||+.|.|.+.++|+++|++++++|+|||+|||.
T Consensus       120 ~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHK  199 (501)
T COG3845         120 RIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHK  199 (501)
T ss_pred             HHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHhhcCEEEEEeCCEEEEecCh-hHHHhhccCccccCCCCCCCCccchhHHHhhccCCCCccccCCCcccccccccc
Q psy7366         150 MEECEALCTKLTIMVNGQFTCLGSA-THLKSKSMALPVSGNDLGRGDPVRSELSRALNDGSGSGIRNSARPEVSGFYNEN  228 (566)
Q Consensus       150 ~~~~~~~~d~i~vl~~G~i~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (566)
                      +.|+.++|||+.||+.|+++..-++ .+                   ....++.+.+-+..                   
T Consensus       200 L~Ev~~iaDrvTVLR~Gkvvgt~~~~~~-------------------~t~~ela~lMvG~~-------------------  241 (501)
T COG3845         200 LKEVMAIADRVTVLRRGKVVGTVDPVAE-------------------TTEEELAELMVGRE-------------------  241 (501)
T ss_pred             HHHHHHhhCeeEEEeCCeEEeeecCCCC-------------------CCHHHHHHHhcCCc-------------------
Confidence            9999999999999999998754331 11                   00111211111100                   


Q ss_pred             cCCccchhhhhhhHHHHHHHHHHHHhhhhheeeccCCeeeeeeccchhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy7366         229 IDGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNGTRLVAVNIWAWRIIGKNLTCMACHGALYSAINLSIEYKVFSRC  308 (566)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (566)
                                                                                                      
T Consensus       242 --------------------------------------------------------------------------------  241 (501)
T COG3845         242 --------------------------------------------------------------------------------  241 (501)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hcccccCCCCCCCcchhHHHHHHhhhcCCCCCCeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHH
Q psy7366         309 FTRSNLHPVPVSLEEDDVRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTT  388 (566)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTL  388 (566)
                              +.  ....     +   ....+....|++++|+..-.   .+...+++|||+|+.|||+||.|-.|-|.+.|
T Consensus       242 --------v~--~~~~-----~---~~~~pg~~vL~V~~L~v~~~---~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL  300 (501)
T COG3845         242 --------VV--LRVV-----K---PPSTPGEVVLEVEDLSVKDR---RGVTAVKDVSFEVRAGEIVGIAGVAGNGQSEL  300 (501)
T ss_pred             --------cc--cccc-----c---CCCCCCCeEEEEeeeEeecC---CCCceeeeeeeEEecCcEEEEEecCCCCHHHH
Confidence                    00  0000     0   00112235799999997643   23568999999999999999999999999999


Q ss_pred             HHHHHCCCCCCccEEEEcCccC-CC--chHHhcCceEEEecCC---CCCCCCCHHHHHHHHHHhc-------CCCchHHH
Q psy7366         389 FKMLTGAIKPTSGNAYVMNHSI-RD--SMDLVRSYIGYCPQFD---ALNDRLTPREHLEFYSRVR-------NVPSVLLN  455 (566)
Q Consensus       389 l~~i~G~~~~~~G~i~~~g~~~-~~--~~~~~~~~i~~v~q~~---~l~~~~tv~e~l~~~~~~~-------~~~~~~~~  455 (566)
                      +.+|+|+.+|.+|+|.++|+++ ..  .....+..++|||.|.   .+.+++|+.||+.+.....       ........
T Consensus       301 ~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~  380 (501)
T COG3845         301 VEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIR  380 (501)
T ss_pred             HHHHhCCCccCCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHH
Confidence            9999999999999999999997 32  3445568899999985   5889999999997753211       13345667


Q ss_pred             HHHHHHHHHcCCC-CccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEc
Q psy7366         456 TIVNESLNKFALG-HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTS  534 (566)
Q Consensus       456 ~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vs  534 (566)
                      +.+.++++.|++. .....++.+||||++||+.+||-|..+|++||+.+||.|||..+.+.+.+.|.+.+++|++||++|
T Consensus       381 ~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS  460 (501)
T COG3845         381 KFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLIS  460 (501)
T ss_pred             HHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence            7889999999996 566788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         535 HNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       535 Hd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      -|++|+..+||||.||++|+++...++++.
T Consensus       461 ~dLDEil~lsDrIaVi~~Gri~~~~~~~~~  490 (501)
T COG3845         461 EDLDEILELSDRIAVIYEGRIVGIVPPEEA  490 (501)
T ss_pred             hhHHHHHHhhheeeeeeCCceecccccccC
Confidence            999999999999999999999998887753

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=100.00  E-value=7.6e-66  Score=577.10  Aligned_cols=441  Identities=22%  Similarity=0.233  Sum_probs=308.5

Q ss_pred             CCcchHHHHHhccccCCCccCCCCCcccccccceeEEcCCCCCCCCCCHHHHHHH-------------------------
Q psy7366           1 MGLTTTPKRVVTLLLTTQKVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEF-------------------------   55 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~-------------------------   55 (566)
                      .||||++|+|+|++.|+.   |.-  .-.....+++++|.+......+|.+++..                         
T Consensus        40 sGKSTLLriiaG~~~p~~---G~I--~~~~~~~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (635)
T PRK11147         40 AGKSTLMKILNGEVLLDD---GRI--IYEQDLIVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSE  114 (635)
T ss_pred             CCHHHHHHHHcCCCCCCC---eEE--EeCCCCEEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchH
Confidence            599999999999986654   111  11111237888887643334566665421                         


Q ss_pred             -----HHHh----cCCChhhHHHHHHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHH
Q psy7366          56 -----YSRV----RNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR  126 (566)
Q Consensus        56 -----~~~~----~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~  126 (566)
                           ....    ...+......++.++++.+|+.  .++++.+|||||||||+||+||+.+|+||||||||||||+.++
T Consensus       115 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~--~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~  192 (635)
T PRK11147        115 KNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD--PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETI  192 (635)
T ss_pred             HHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC--CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHH
Confidence                 0000    0011123456789999999996  3889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCEEEEecCChhHHHhhcCEEEEEeCCEEE-EecChhHHHhhccCccccCCCCCCCCccchhHHHhh
Q psy7366         127 RFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFT-CLGSATHLKSKSMALPVSGNDLGRGDPVRSELSRAL  205 (566)
Q Consensus       127 ~~l~~~l~~l~~~g~tviiisH~~~~~~~~~d~i~vl~~G~i~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (566)
                      +||.++|+++   +.|||+||||++++..+||+|++|++|+++ +.|+++++.......             ........
T Consensus       193 ~~L~~~L~~~---~~tvlivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~~~~~~~~~-------------~~~~~~~~  256 (635)
T PRK11147        193 EWLEGFLKTF---QGSIIFISHDRSFIRNMATRIVDLDRGKLVSYPGNYDQYLLEKEEA-------------LRVEELQN  256 (635)
T ss_pred             HHHHHHHHhC---CCEEEEEeCCHHHHHHhcCeEEEEECCEEEEecCCHHHHHHHHHHH-------------HHHHHHHH
Confidence            9999999876   359999999999999999999999999997 568887754321000             00000000


Q ss_pred             ccCCCCccccCCCcccccccccccCCccchhhhhhhHHHHHHHHHHHHhhhhheeeccCCeeeeeeccchhhchHHHHHH
Q psy7366         206 NDGSGSGIRNSARPEVSGFYNENIDGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNGTRLVAVNIWAWRIIGKNLTC  285 (566)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (566)
                      ...                               ...+       .....|.+                      .  ..
T Consensus       257 ~~~-------------------------------~~~~-------~~~~~~~~----------------------~--~~  274 (635)
T PRK11147        257 AEF-------------------------------DRKL-------AQEEVWIR----------------------Q--GI  274 (635)
T ss_pred             HHH-------------------------------HHHH-------HHHHHHHH----------------------h--hh
Confidence            000                               0000       00000000                      0  00


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCcchhHHHHHHhhhcC-CCCCCeEEEeeeEEEeCCcCCCcceeee
Q psy7366         286 MACHGALYSAINLSIEYKVFSRCFTRSNLHPVPVSLEEDDVRKERERVEHG-ADSGDVLVVKRLFKIYANSKGTKPAVNQ  364 (566)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~l~~~y~~~~~~~~~l~~  364 (566)
                      .   +..  +...... +...... ...   ..........   ....... .....+|+++|+++.|+    ++++|+|
T Consensus       275 ~---a~~--~~~~~r~-~~~~~~~-~~~---~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~----~~~il~~  337 (635)
T PRK11147        275 K---ARR--TRNEGRV-RALKALR-RER---SERREVMGTA---KMQVEEASRSGKIVFEMENVNYQID----GKQLVKD  337 (635)
T ss_pred             h---hhh--hhHHHHH-HHHHHhh-hhh---ccccccCCce---eEEeCCCCCCCCceEEEeeeEEEEC----CeEEEcC
Confidence            0   000  0000000 0000000 000   0000000000   0000001 11234799999999996    4679999


Q ss_pred             eeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCC-CCCCCCCHHHHHHHH
Q psy7366         365 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFD-ALNDRLTPREHLEFY  443 (566)
Q Consensus       365 isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~-~l~~~~tv~e~l~~~  443 (566)
                      +||+|.+|+++||+|||||||||||++|+|+++|++|+|.+ |.++         +|||++|++ .+++.+||.||+.+.
T Consensus       338 vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~---------~i~y~~q~~~~l~~~~tv~e~l~~~  407 (635)
T PRK11147        338 FSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL---------EVAYFDQHRAELDPEKTVMDNLAEG  407 (635)
T ss_pred             cEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc---------EEEEEeCcccccCCCCCHHHHHHhh
Confidence            99999999999999999999999999999999999999998 5432         599999986 588899999999764


Q ss_pred             HHhcCCCchHHHHHHHHHHHHcCCC-CccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy7366         444 SRVRNVPSVLLNTIVNESLNKFALG-HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER  522 (566)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~  522 (566)
                      .......  .....+.++++.+++. +..++++.+|||||||||+||++|+.+|++|||||||+|||+.++..+.++|++
T Consensus       408 ~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~  485 (635)
T PRK11147        408 KQEVMVN--GRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDS  485 (635)
T ss_pred             ccccccc--chHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHh
Confidence            3211111  1134577899999996 567999999999999999999999999999999999999999999999999987


Q ss_pred             HHhCCcEEEEEccCHHHHHhhCCEEEEEE-CCEEEEe
Q psy7366         523 AVSEGRCVILTSHNMEECEALCTKLTIMV-NGQFTCL  558 (566)
Q Consensus       523 ~~~~g~tvl~vsHd~~~~~~~~drv~~l~-~G~i~~~  558 (566)
                      +   +.|||+||||++++..+||++++|+ +|++...
T Consensus       486 ~---~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~  519 (635)
T PRK11147        486 Y---QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRY  519 (635)
T ss_pred             C---CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEc
Confidence            6   5699999999999999999999998 8998653

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=100.00  E-value=3.4e-67  Score=565.14  Aligned_cols=449  Identities=25%  Similarity=0.287  Sum_probs=319.0

Q ss_pred             CCcchHHHHHhccccCCCccCCCCCcccccccceeEEcCCCCCCCCCCHHHHHHHHHH----------------------
Q psy7366           1 MGLTTTPKRVVTLLLTTQKVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSR----------------------   58 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~----------------------   58 (566)
                      .||||++|++.|...++.   |.  .......+|||++|++.+.+..||.+++.....                      
T Consensus        40 aGKSTLLkilaG~~~~~~---G~--i~~~~~~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (530)
T COG0488          40 AGKSTLLKILAGELEPDS---GE--VTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDE  114 (530)
T ss_pred             CCHHHHHHHHcCCCcCCC---Ce--EeecCCceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhH
Confidence            488888888888885553   21  223333579999999999999999998753210                      


Q ss_pred             --------hcCCChhhHHHHHHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHH
Q psy7366          59 --------VRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW  130 (566)
Q Consensus        59 --------~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~  130 (566)
                              ...++.+..+.+++.++..+|+... ++++.+||||||.||+||+||..+||+|||||||||||..++.||.
T Consensus       115 ~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe  193 (530)
T COG0488         115 LLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLE  193 (530)
T ss_pred             HHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHH
Confidence                    0012234456789999999999877 9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCEEEEecCChhHHHhhcCEEEEEeCCEEE-EecChhHHHhhccCccccCCCCCCCCccchhHHHhhccCC
Q psy7366         131 TCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFT-CLGSATHLKSKSMALPVSGNDLGRGDPVRSELSRALNDGS  209 (566)
Q Consensus       131 ~~l~~l~~~g~tviiisH~~~~~~~~~d~i~vl~~G~i~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (566)
                      ++|.++  .| |||+||||++|++++|++|+.++.|++. +.|+++.+.....+...            .+ .....+.+
T Consensus       194 ~~L~~~--~g-tviiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gny~~~~~~r~~~~~------------~~-~~~~~~~~  257 (530)
T COG0488         194 DYLKRY--PG-TVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYSSYLEQKAERLR------------QE-AAAYEKQQ  257 (530)
T ss_pred             HHHHhC--CC-cEEEEeCCHHHHHHHhhheEEecCCceeEecCCHHHHHHHHHHHHH------------HH-HHHHHHHH
Confidence            999864  46 9999999999999999999999999976 66777776432110000            00 00000000


Q ss_pred             CCccccCCCcccccccccccCCccchhhhhhhHHHHHHHHHHHHhhhhheeeccCCeeeeeeccchhhchHHHHHHHHHH
Q psy7366         210 GSGIRNSARPEVSGFYNENIDGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNGTRLVAVNIWAWRIIGKNLTCMACH  289 (566)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (566)
                       ..++                       ..              ..|.+.+...                       ...
T Consensus       258 -~~~~-----------------------~~--------------~~~i~r~~~~-----------------------~~~  276 (530)
T COG0488         258 -KELA-----------------------KE--------------QEWIRRGKAA-----------------------ASK  276 (530)
T ss_pred             -HHHH-----------------------HH--------------HHHHHHHHhc-----------------------cch
Confidence             0000                       00              0000000000                       000


Q ss_pred             HHHHHHHHHHHHHHHHhhhhcccccCCCCCCCcchhHHHHHHhhhcCCCCCCeEEEeeeEEEeCCcCCCcceeeeeeEEE
Q psy7366         290 GALYSAINLSIEYKVFSRCFTRSNLHPVPVSLEEDDVRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGV  369 (566)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~~~~~l~~isl~i  369 (566)
                      .    ....+.. +...+.....   ..........+............+..+++++|+++.|+.   ++.+++++||.|
T Consensus       277 ~----k~a~sr~-k~l~k~~~~~---~~~~~~~~~~~~~~~f~~~~~~~g~~vl~~~~~~~~y~~---~~~l~~~~s~~i  345 (530)
T COG0488         277 A----KKAKSRI-KRLEKLEARL---AEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDG---GRLLLKDLSFRI  345 (530)
T ss_pred             H----HHHHHHH-HHHHHHHhhh---hhcccccccccceeeccCCcccCCCeeEEEeccccccCC---CceeecCceEEe
Confidence            0    0000000 0000000000   000000000000000000000123458999999999963   368999999999


Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCC-CCCCCCCHHHHHHHHHHhcC
Q psy7366         370 GRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFD-ALNDRLTPREHLEFYSRVRN  448 (566)
Q Consensus       370 ~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~-~l~~~~tv~e~l~~~~~~~~  448 (566)
                      .+|+.+||+||||+|||||||+|+|...|.+|+|.+... +         ++||++|+. .+.++.|+.|++.-..    
T Consensus       346 ~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-v---------~igyf~Q~~~~l~~~~t~~d~l~~~~----  411 (530)
T COG0488         346 DRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-V---------KIGYFDQHRDELDPDKTVLEELSEGF----  411 (530)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-e---------EEEEEEehhhhcCccCcHHHHHHhhC----
Confidence            999999999999999999999999999999999988653 2         699999986 4557789999886432    


Q ss_pred             CCchHHHHHHHHHHHHcCCC-CccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q psy7366         449 VPSVLLNTIVNESLNKFALG-HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEG  527 (566)
Q Consensus       449 ~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g  527 (566)
                       +. ..+..+...|.+|++. +...+++..||||||.|+.||+.++.+|++||||||||+||..+++.+.+.|.++   .
T Consensus       412 -~~-~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~  486 (530)
T COG0488         412 -PD-GDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF---E  486 (530)
T ss_pred             -cc-ccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---C
Confidence             11 1146688999999996 5678999999999999999999999999999999999999999999999999887   7


Q ss_pred             cEEEEEccCHHHHHhhCCEEEEEECCEEEEe-cCccc
Q psy7366         528 RCVILTSHNMEECEALCTKLTIMVNGQFTCL-GSATH  563 (566)
Q Consensus       528 ~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~-g~~~~  563 (566)
                      .|||+||||.+++.++|++++.+.+ ++... |..++
T Consensus       487 Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~  522 (530)
T COG0488         487 GTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYED  522 (530)
T ss_pred             CeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHH
Confidence            8999999999999999999999998 55554 55443

>KOG0055|consensus

Probab=100.00  E-value=6.8e-66  Score=579.69  Aligned_cols=214  Identities=27%  Similarity=0.440  Sum_probs=186.6

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCc
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSY  420 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~  420 (566)
                      -++++|+++.|+.++ +.++|+|+||+|++|+.+||+||+||||||.+.+|-.+|.|++|.|.+||.++++ +...+|++
T Consensus       987 ~I~~~~V~F~YPsRP-~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~ 1065 (1228)
T KOG0055|consen  987 DIEFRNVSFAYPTRP-DVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQ 1065 (1228)
T ss_pred             EEEEeeeEeeCCCCC-CchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHh
Confidence            489999999999655 5789999999999999999999999999999999999999999999999999987 67789999


Q ss_pred             eEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHc-------CCCCcccc----CcCcCChhHHHHHHHH
Q psy7366         421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKF-------ALGHYSDR----EVRTLSGGNKRKLSTA  489 (566)
Q Consensus       421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-------~l~~~~~~----~~~~LSgGqkqrv~la  489 (566)
                      +|.|.|+|.||.. |++|||.++.  ...+..+    +.++++.-       +|++-.|.    +..+||||||||++||
T Consensus      1066 i~lVsQEP~LF~~-TIrENI~YG~--~~vs~~e----Ii~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIA 1138 (1228)
T KOG0055|consen 1066 IGLVSQEPVLFNG-TIRENIAYGS--EEVSEEE----IIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIA 1138 (1228)
T ss_pred             cceeccCchhhcc-cHHHHHhccC--CCCCHHH----HHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHH
Confidence            9999999999976 9999999872  1233332    33333332       23333444    4559999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         490 IALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       490 ~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      ||+++||+||||||.||+||.++.+.+.+.|.+. .+|+|.|+|.|.+..+.. ||.|+|+++|+|++.|+.++|.
T Consensus      1139 RAilRnPkILLLDEATSALDseSErvVQeALd~a-~~gRT~IvIAHRLSTIqn-aD~I~Vi~~G~VvE~GtH~~L~ 1212 (1228)
T KOG0055|consen 1139 RAILRNPKILLLDEATSALDSESERVVQEALDRA-MEGRTTIVIAHRLSTIQN-ADVIAVLKNGKVVEQGTHDELL 1212 (1228)
T ss_pred             HHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHh-hcCCcEEEEecchhhhhc-CCEEEEEECCEEEecccHHHHH
Confidence            9999999999999999999999999999999886 458999999999999986 9999999999999999999874

>PLN03073 ABC transporter F family; Provisional

Probab=100.00  E-value=1.9e-63  Score=558.49  Aligned_cols=388  Identities=20%  Similarity=0.288  Sum_probs=274.4

Q ss_pred             hHHHHHHHHHHHcCCC-cccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Q psy7366          66 LLNTIVNESLNKFALG-HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVI  144 (566)
Q Consensus        66 ~~~~~~~~~l~~~gl~-~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi  144 (566)
                      ..+.++.++|..+|+. ...++++.+||||||||++||+||+.+|++|||||||++||+.++.+|.++|+++   |.|||
T Consensus       319 ~~~~r~~~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~tvi  395 (718)
T PLN03073        319 TAEARAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKTFI  395 (718)
T ss_pred             hHHHHHHHHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCEEE
Confidence            3455677888888986 4678999999999999999999999999999999999999999999999999875   78999


Q ss_pred             EecCChhHHHhhcCEEEEEeCCEEE-EecChhHHHhhccCccccCCCCCCCCccchhHHHhhccCCCCccccCCCccccc
Q psy7366         145 LTSHNMEECEALCTKLTIMVNGQFT-CLGSATHLKSKSMALPVSGNDLGRGDPVRSELSRALNDGSGSGIRNSARPEVSG  223 (566)
Q Consensus       145 iisH~~~~~~~~~d~i~vl~~G~i~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (566)
                      +||||++++..+||+|++|++|++. +.|+++.+.......             .....+.....+.. .+         
T Consensus       396 ivsHd~~~l~~~~d~i~~l~~g~i~~~~g~~~~~~~~~~~~-------------~~~~~~~~e~~~k~-~~---------  452 (718)
T PLN03073        396 VVSHAREFLNTVVTDILHLHGQKLVTYKGDYDTFERTREEQ-------------LKNQQKAFESNERS-RS---------  452 (718)
T ss_pred             EEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHHHHHHHH-------------HHHHHHHHHHHHHH-HH---------
Confidence            9999999999999999999999996 677776654311000             00000000000000 00         


Q ss_pred             ccccccCCccchhhhhhhHHHHHHHHHHHHhhhhheeeccCCeeeeeeccchhhchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7366         224 FYNENIDGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNGTRLVAVNIWAWRIIGKNLTCMACHGALYSAINLSIEYK  303 (566)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (566)
                                 .   .              ..+..                       .........    ...... .+
T Consensus       453 -----------~---l--------------~~~i~-----------------------~~~~~a~~~----~~~~s~-~k  476 (718)
T PLN03073        453 -----------H---M--------------QAFID-----------------------KFRYNAKRA----SLVQSR-IK  476 (718)
T ss_pred             -----------H---H--------------HHHHH-----------------------Hhhhhhhhh----HHHhhc-ch
Confidence                       0   0              00000                       000000000    000000 00


Q ss_pred             HHhhhhcccccCCCCCCCcchhHHHHHHhhhc-CCCCCCeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCC
Q psy7366         304 VFSRCFTRSNLHPVPVSLEEDDVRKERERVEH-GADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNG  382 (566)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NG  382 (566)
                      ...+. ..  .....   ....... .. ... ......+++++|+++.|+.   .+.+|+|+||+|.+|++++|+||||
T Consensus       477 ~l~~~-~~--~~~~~---~~~~~~~-~~-~~~~~~~~~~~L~~~~ls~~y~~---~~~il~~vsl~i~~Ge~i~LvG~NG  545 (718)
T PLN03073        477 ALDRL-GH--VDAVV---NDPDYKF-EF-PTPDDRPGPPIISFSDASFGYPG---GPLLFKNLNFGIDLDSRIAMVGPNG  545 (718)
T ss_pred             HHHHH-hh--hhccc---cCCCcee-ec-CCCccCCCCceEEEEeeEEEeCC---CCeeEeccEEEEcCCCEEEEECCCC
Confidence            00000 00  00000   0000000 00 000 0112357999999999952   3469999999999999999999999


Q ss_pred             CcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHHHH-HhcCCCchHHHHHHHHH
Q psy7366         383 AGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYS-RVRNVPSVLLNTIVNES  461 (566)
Q Consensus       383 sGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~~  461 (566)
                      ||||||||+|+|+++|++|+|.+++.          .++||++|++.  ..+++.++..+.. ...  +. ...+.+.++
T Consensus       546 sGKSTLLk~L~Gll~p~~G~I~~~~~----------~~igyv~Q~~~--~~l~~~~~~~~~~~~~~--~~-~~~~~i~~~  610 (718)
T PLN03073        546 IGKSTILKLISGELQPSSGTVFRSAK----------VRMAVFSQHHV--DGLDLSSNPLLYMMRCF--PG-VPEQKLRAH  610 (718)
T ss_pred             CcHHHHHHHHhCCCCCCCceEEECCc----------eeEEEEecccc--ccCCcchhHHHHHHHhc--CC-CCHHHHHHH
Confidence            99999999999999999999998752          36999999852  3455655543321 111  11 113457889


Q ss_pred             HHHcCCC-CccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHH
Q psy7366         462 LNKFALG-HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEEC  540 (566)
Q Consensus       462 l~~~~l~-~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~  540 (566)
                      ++.+++. ...++++.+|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|.++   +.|||+||||++++
T Consensus       611 L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~---~gtvIivSHd~~~i  687 (718)
T PLN03073        611 LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF---QGGVLMVSHDEHLI  687 (718)
T ss_pred             HHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CCEEEEEECCHHHH
Confidence            9999997 4678999999999999999999999999999999999999999999998888765   34999999999999


Q ss_pred             HhhCCEEEEEECCEEE-EecCcccc
Q psy7366         541 EALCTKLTIMVNGQFT-CLGSATHL  564 (566)
Q Consensus       541 ~~~~drv~~l~~G~i~-~~g~~~~l  564 (566)
                      ..+||++++|++|+++ +.|+.++.
T Consensus       688 ~~~~drv~~l~~G~i~~~~g~~~~~  712 (718)
T PLN03073        688 SGSVDELWVVSEGKVTPFHGTFHDY  712 (718)
T ss_pred             HHhCCEEEEEECCEEEEeCCCHHHH
Confidence            9999999999999998 67876654

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=100.00  E-value=1.5e-60  Score=569.81  Aligned_cols=218  Identities=25%  Similarity=0.367  Sum_probs=193.0

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCC---CCccEEEEcCccCCCchHHhc
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK---PTSGNAYVMNHSIRDSMDLVR  418 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~  418 (566)
                      +++++||++.|+.+.+.+.+|+|+|++|++||++||+|||||||||||++|+|+.+   |++|+|.++|+++..   ..+
T Consensus       759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~---~~~  835 (1394)
T TIGR00956       759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS---SFQ  835 (1394)
T ss_pred             eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh---hhh
Confidence            57999999999643345679999999999999999999999999999999999997   788999999998742   356


Q ss_pred             CceEEEecCCCCCCCCCHHHHHHHHHHhcC---CCchHHHHHHHHHHHHcCCCCccccCcC----cCChhHHHHHHHHHH
Q psy7366         419 SYIGYCPQFDALNDRLTPREHLEFYSRVRN---VPSVLLNTIVNESLNKFALGHYSDREVR----TLSGGNKRKLSTAIA  491 (566)
Q Consensus       419 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~----~LSgGqkqrv~la~a  491 (566)
                      +.+|||+|++.+++.+||+||+.+...++.   .+..+..+.++++++.+++.+..++.++    .|||||||||+||++
T Consensus       836 ~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~a  915 (1394)
T TIGR00956       836 RSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVE  915 (1394)
T ss_pred             cceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHH
Confidence            789999999888899999999998765432   2333445678999999999988888887    799999999999999


Q ss_pred             HcCCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHH-HHhhCCEEEEEECC-EEEEecCcc
Q psy7366         492 LLGNPP-LIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEE-CEALCTKLTIMVNG-QFTCLGSAT  562 (566)
Q Consensus       492 l~~~p~-lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~-~~~~~drv~~l~~G-~i~~~g~~~  562 (566)
                      |+.+|+ ||||||||+|||+.++..+++.|++++++|+|||++||+++. +.+.||++++|++| ++++.|++.
T Consensus       916 L~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~  989 (1394)
T TIGR00956       916 LVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLG  989 (1394)
T ss_pred             HHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcc
Confidence            999997 999999999999999999999999998889999999999986 45779999999997 999999874

>PLN03232 ABC transporter C family member; Provisional

Probab=100.00  E-value=8.1e-61  Score=577.28  Aligned_cols=212  Identities=21%  Similarity=0.326  Sum_probs=183.9

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCc
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSY  420 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~  420 (566)
                      .|+++|++++|..  +.+++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.. ....+|++
T Consensus      1234 ~I~f~nVsf~Y~~--~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~ 1311 (1495)
T PLN03232       1234 SIKFEDVHLRYRP--GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRV 1311 (1495)
T ss_pred             cEEEEEEEEEECC--CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhh
Confidence            5999999999952  23579999999999999999999999999999999999999999999999999976 56678899


Q ss_pred             eEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCC-----------ccccCcCcCChhHHHHHHHH
Q psy7366         421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGH-----------YSDREVRTLSGGNKRKLSTA  489 (566)
Q Consensus       421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGqkqrv~la  489 (566)
                      |+||||+|.+|++ |++|||.++.   ..+    ++.+.++++..++.+           .......+||||||||++||
T Consensus      1312 i~iVpQdp~LF~g-TIr~NL~~~~---~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLA 1383 (1495)
T PLN03232       1312 LSIIPQSPVLFSG-TVRFNIDPFS---EHN----DADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLA 1383 (1495)
T ss_pred             cEEECCCCeeeCc-cHHHHcCCCC---CCC----HHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHH
Confidence            9999999999987 9999997532   111    233555666655532           22344568999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         490 IALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       490 ~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      |||+++|+|||||||||+||+.+.+.+.+.|++.. +++|+|+|+|+++.+.. ||+|++|++|++++.|+++++.
T Consensus      1384 RALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ivE~Gt~~eLl 1457 (1495)
T PLN03232       1384 RALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLNTIID-CDKILVLSSGQVLEYDSPQELL 1457 (1495)
T ss_pred             HHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEECCHHHHH
Confidence            99999999999999999999999999999998863 47999999999999987 9999999999999999999874

>PLN03130 ABC transporter C family member; Provisional

Probab=100.00  E-value=2.1e-60  Score=573.88  Aligned_cols=212  Identities=21%  Similarity=0.332  Sum_probs=184.2

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCc
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSY  420 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~  420 (566)
                      .|+++|++++|..  +..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.. ....+|++
T Consensus      1237 ~I~f~nVsf~Y~~--~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~ 1314 (1622)
T PLN03130       1237 SIKFEDVVLRYRP--ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKV 1314 (1622)
T ss_pred             cEEEEEEEEEeCC--CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhc
Confidence            5999999999962  23479999999999999999999999999999999999999999999999999976 56778999


Q ss_pred             eEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCC-----------ccccCcCcCChhHHHHHHHH
Q psy7366         421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGH-----------YSDREVRTLSGGNKRKLSTA  489 (566)
Q Consensus       421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGqkqrv~la  489 (566)
                      |+||||+|.+|++ |++|||.++.   ...    ++.+.++++..++.+           .......+||||||||++||
T Consensus      1315 IsiVpQdp~LF~G-TIreNLd~~~---~~t----deei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLA 1386 (1622)
T PLN03130       1315 LGIIPQAPVLFSG-TVRFNLDPFN---EHN----DADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLA 1386 (1622)
T ss_pred             cEEECCCCccccc-cHHHHhCcCC---CCC----HHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHH
Confidence            9999999999987 9999997542   111    233556666655432           22334458999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         490 IALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       490 ~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      |||+++|+|||||||||+||..+.+.|.+.|++.. +++|+|+|+|+++.+.. ||||+||++|+|++.|+++++.
T Consensus      1387 RALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~tI~~-~DrIlVLd~G~IvE~Gt~~eLl 1460 (1622)
T PLN03130       1387 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILVLDAGRVVEFDTPENLL 1460 (1622)
T ss_pred             HHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChHHHHh-CCEEEEEECCEEEEeCCHHHHH
Confidence            99999999999999999999999999999999864 47999999999999987 9999999999999999999874

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=100.00  E-value=2.1e-60  Score=569.07  Aligned_cols=215  Identities=21%  Similarity=0.342  Sum_probs=182.2

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCC-----------------------
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----------------------  398 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~-----------------------  398 (566)
                      .|+++||+++|+.++ +.++|+|+||+|++|+++||+||||||||||+++|.|+++|                       
T Consensus      1165 ~I~f~nVsF~Y~~~~-~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~ 1243 (1466)
T PTZ00265       1165 KIEIMDVNFRYISRP-NVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQ 1243 (1466)
T ss_pred             eEEEEEEEEECCCCC-CCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccc
Confidence            489999999997422 35799999999999999999999999999999999999998                       


Q ss_pred             -------------------------------CccEEEEcCccCCC-chHHhcCceEEEecCCCCCCCCCHHHHHHHHHHh
Q psy7366         399 -------------------------------TSGNAYVMNHSIRD-SMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRV  446 (566)
Q Consensus       399 -------------------------------~~G~i~~~g~~~~~-~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~  446 (566)
                                                     ++|+|.++|.++.. ....+|++||||+|+|.+|+ .|++|||.++.. 
T Consensus      1244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gTIreNI~~g~~- 1321 (1466)
T PTZ00265       1244 GDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSIYENIKFGKE- 1321 (1466)
T ss_pred             cccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-ccHHHHHhcCCC-
Confidence                                           69999999999976 56778999999999999987 499999988521 


Q ss_pred             cCCCchHHHHHHHHHHHHcCCCC-----------ccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHH
Q psy7366         447 RNVPSVLLNTIVNESLNKFALGH-----------YSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRF  515 (566)
Q Consensus       447 ~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~  515 (566)
                       ...    .+.+.++++..++.+           ........||||||||++|||||+++|+|||||||||+||+.+.+.
T Consensus      1322 -~at----~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~ 1396 (1466)
T PTZ00265       1322 -DAT----REDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKL 1396 (1466)
T ss_pred             -CCC----HHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHH
Confidence             112    223455555554422           2233455799999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH-hCCcEEEEEccCHHHHHhhCCEEEEEEC----CEEE-EecCccccc
Q psy7366         516 LWTCIERAV-SEGRCVILTSHNMEECEALCTKLTIMVN----GQFT-CLGSATHLK  565 (566)
Q Consensus       516 l~~~l~~~~-~~g~tvl~vsHd~~~~~~~~drv~~l~~----G~i~-~~g~~~~l~  565 (566)
                      |.+.|.++. .+++|+|+|||++..+.. ||+|++|++    |+++ +.|+.+++.
T Consensus      1397 I~~~L~~~~~~~~~TvIiIaHRlsti~~-aD~Ivvl~~~~~~G~iv~e~Gth~eLl 1451 (1466)
T PTZ00265       1397 IEKTIVDIKDKADKTIITIAHRIASIKR-SDKIVVFNNPDRTGSFVQAHGTHEELL 1451 (1466)
T ss_pred             HHHHHHHHhccCCCEEEEEechHHHHHh-CCEEEEEeCCCCCCCEEEEecCHHHHH
Confidence            999999886 358999999999988865 999999999    8955 899998874

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=1.4e-60  Score=443.46  Aligned_cols=219  Identities=26%  Similarity=0.401  Sum_probs=207.4

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC--chHHhcC
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD--SMDLVRS  419 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~--~~~~~~~  419 (566)
                      +|+++|++|+|+    ...+|++||++|.+||+++|+||||||||||||||.|+.+|++|+|+++|+++..  ....+|+
T Consensus         2 mi~i~~l~K~fg----~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~   77 (240)
T COG1126           2 MIEIKNLSKSFG----DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRR   77 (240)
T ss_pred             eEEEEeeeEEeC----CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHH
Confidence            689999999997    6789999999999999999999999999999999999999999999999987743  4566889


Q ss_pred             ceEEEecCCCCCCCCCHHHHHHHHH-HhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCE
Q psy7366         420 YIGYCPQFDALNDRLTPREHLEFYS-RVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPL  498 (566)
Q Consensus       420 ~i~~v~q~~~l~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~l  498 (566)
                      ++|+|||+++|||.+||.||+.+.. ...+.++.++++.+.++|+++||.+..+.+|.+|||||||||+|||||+.+|++
T Consensus        78 ~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~v  157 (240)
T COG1126          78 KVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKV  157 (240)
T ss_pred             hcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCE
Confidence            9999999999999999999998854 456788888999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         499 IFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       499 llLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      +|+|||||+|||+...++.+.+++++++|.|+|+|||++.++.++||||++|++|+++++|+++++
T Consensus       158 mLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~  223 (240)
T COG1126         158 MLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEF  223 (240)
T ss_pred             EeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999998875

>PLN03140 ABC transporter G family member; Provisional

Probab=100.00  E-value=2e-58  Score=549.67  Aligned_cols=219  Identities=26%  Similarity=0.394  Sum_probs=189.3

Q ss_pred             eEEEeeeEEEeCCc---------CCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCC--CccEEEEcCccC
Q psy7366         342 VLVVKRLFKIYANS---------KGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP--TSGNAYVMNHSI  410 (566)
Q Consensus       342 ~l~~~~l~~~y~~~---------~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~  410 (566)
                      .+..+||++.+...         .+.+.+|+|+|++|++|++++|+|||||||||||++|+|..++  .+|+|.++|.+.
T Consensus       867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~  946 (1470)
T PLN03140        867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK  946 (1470)
T ss_pred             eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence            58899999887421         1245799999999999999999999999999999999999763  689999999876


Q ss_pred             CCchHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhc---CCCchHHHHHHHHHHHHcCCCCccccCc-----CcCChhH
Q psy7366         411 RDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVR---NVPSVLLNTIVNESLNKFALGHYSDREV-----RTLSGGN  482 (566)
Q Consensus       411 ~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq  482 (566)
                      ..  ...++.+|||+|++.+++.+||+||+.+....+   ..+..+..+.++++++.++|.+..++.+     ..|||||
T Consensus       947 ~~--~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGe 1024 (1470)
T PLN03140        947 KQ--ETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQ 1024 (1470)
T ss_pred             Ch--HHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHH
Confidence            42  234567999999998999999999999876443   1223334456889999999988888876     5899999


Q ss_pred             HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHH-HHHhhCCEEEEEEC-CEEEEecC
Q psy7366         483 KRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME-ECEALCTKLTIMVN-GQFTCLGS  560 (566)
Q Consensus       483 kqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~-~~~~~~drv~~l~~-G~i~~~g~  560 (566)
                      ||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|+++ ++..+||++++|++ |++++.|+
T Consensus      1025 rkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~ 1104 (1470)
T PLN03140       1025 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGP 1104 (1470)
T ss_pred             HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECC
Confidence            99999999999999999999999999999999999999999888999999999998 57789999999996 89999998


Q ss_pred             cc
Q psy7366         561 AT  562 (566)
Q Consensus       561 ~~  562 (566)
                      +.
T Consensus      1105 ~~ 1106 (1470)
T PLN03140       1105 LG 1106 (1470)
T ss_pred             cc
Confidence            63

>PTZ00243 ABC transporter; Provisional

Probab=100.00  E-value=5.6e-58  Score=552.21  Aligned_cols=212  Identities=24%  Similarity=0.336  Sum_probs=183.8

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCc
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSY  420 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~  420 (566)
                      .|+++|++++|..  +..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.. ....+|++
T Consensus      1308 ~I~f~nVsf~Y~~--~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~ 1385 (1560)
T PTZ00243       1308 SLVFEGVQMRYRE--GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQ 1385 (1560)
T ss_pred             eEEEEEEEEEeCC--CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhc
Confidence            5999999999963  23469999999999999999999999999999999999999999999999999976 56678999


Q ss_pred             eEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCc-------ccc----CcCcCChhHHHHHHHH
Q psy7366         421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHY-------SDR----EVRTLSGGNKRKLSTA  489 (566)
Q Consensus       421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~----~~~~LSgGqkqrv~la  489 (566)
                      |+||||+|.+|++ |+++||..+.   ...    .+.+.++++..++.+.       ++.    ...+||||||||++||
T Consensus      1386 I~iVpQdp~LF~g-TIreNIdp~~---~~s----deeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLA 1457 (1560)
T PTZ00243       1386 FSMIPQDPVLFDG-TVRQNVDPFL---EAS----SAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMA 1457 (1560)
T ss_pred             ceEECCCCccccc-cHHHHhCccc---CCC----HHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHH
Confidence            9999999999987 9999996431   111    2446677777776432       233    3357999999999999


Q ss_pred             HHHcCC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         490 IALLGN-PPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       490 ~al~~~-p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      |||+++ |+|||||||||+||+.+.+.+.+.|++.. +++|||+|+|+++.+.. ||+|++|++|+|++.|+++++.
T Consensus      1458 RALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~ti~~-~DrIlVLd~G~VvE~Gt~~eLl 1532 (1560)
T PTZ00243       1458 RALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLHTVAQ-YDKIIVMDHGAVAEMGSPRELV 1532 (1560)
T ss_pred             HHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHHHHHh-CCEEEEEECCEEEEECCHHHHH
Confidence            999995 89999999999999999999999998763 47999999999998875 9999999999999999999874

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=100.00  E-value=1.3e-58  Score=558.78  Aligned_cols=212  Identities=21%  Similarity=0.270  Sum_probs=183.3

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCc
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSY  420 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~  420 (566)
                      .++++|++++|+.  +..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.. ....+|++
T Consensus      1284 ~I~f~nVsf~Y~~--~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~ 1361 (1522)
T TIGR00957      1284 RVEFRNYCLRYRE--DLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFK 1361 (1522)
T ss_pred             cEEEEEEEEEeCC--CCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhc
Confidence            5999999999963  23469999999999999999999999999999999999999999999999999976 56678999


Q ss_pred             eEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCC-------cccc----CcCcCChhHHHHHHHH
Q psy7366         421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGH-------YSDR----EVRTLSGGNKRKLSTA  489 (566)
Q Consensus       421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~----~~~~LSgGqkqrv~la  489 (566)
                      |+||||+|.+|++ |+++||..+.   ...    ++.+.++++..++.+       .++.    ....||||||||++||
T Consensus      1362 i~iVpQdp~LF~g-TIr~NLdp~~---~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LA 1433 (1522)
T TIGR00957      1362 ITIIPQDPVLFSG-SLRMNLDPFS---QYS----DEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLA 1433 (1522)
T ss_pred             CeEECCCCcccCc-cHHHHcCccc---CCC----HHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHH
Confidence            9999999999987 9999996421   112    233556666665532       2233    3457999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         490 IALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       490 ~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      |||+++|+||||||||++||+++...+.+.|++.. +++|||+|+|+++.+.. ||||+||++|+|++.|+++++.
T Consensus      1434 RALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~ti~~-~DrIlVld~G~IvE~G~~~eLl 1507 (1522)
T TIGR00957      1434 RALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLNTIMD-YTRVIVLDKGEVAEFGAPSNLL 1507 (1522)
T ss_pred             HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHh-CCEEEEEECCEEEEECCHHHHH
Confidence            99999999999999999999999999999998764 47999999999999886 8999999999999999999874

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=100.00  E-value=6.3e-56  Score=534.08  Aligned_cols=211  Identities=23%  Similarity=0.359  Sum_probs=183.3

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCc
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSY  420 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~  420 (566)
                      .|+++|++++|..  +.+++|+|+||+|++||.+||+|++|||||||+++|+|+++ .+|+|.+||.++.. ....+|++
T Consensus      1217 ~I~f~nVs~~Y~~--~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~ 1293 (1490)
T TIGR01271      1217 QMDVQGLTAKYTE--AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKA 1293 (1490)
T ss_pred             eEEEEEEEEEeCC--CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhc
Confidence            5999999999963  24679999999999999999999999999999999999997 79999999999976 45678999


Q ss_pred             eEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCc-------cccCc----CcCChhHHHHHHHH
Q psy7366         421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHY-------SDREV----RTLSGGNKRKLSTA  489 (566)
Q Consensus       421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~----~~LSgGqkqrv~la  489 (566)
                      |+||||+|.+|++ |+++||....   ..    .++.+.++++..++.+.       ++..+    ..||||||||++||
T Consensus      1294 is~IpQdp~LF~G-TIR~NLdp~~---~~----tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LA 1365 (1490)
T TIGR01271      1294 FGVIPQKVFIFSG-TFRKNLDPYE---QW----SDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLA 1365 (1490)
T ss_pred             eEEEeCCCccCcc-CHHHHhCccc---CC----CHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHH
Confidence            9999999999987 9999996431   11    13456677887776432       23333    37999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         490 IALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       490 ~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      |||+++|+||||||||++||+.+...|.+.|++.. +++|||+|||.++.+.. ||+|++|++|+|++.|+++++.
T Consensus      1366 RALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~-~DrIlvL~~G~ivE~g~p~~Ll 1439 (1490)
T TIGR01271      1366 RSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVEALLE-CQQFLVIEGSSVKQYDSIQKLL 1439 (1490)
T ss_pred             HHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHh-CCEEEEEECCEEEEeCCHHHHH
Confidence            99999999999999999999999999999998764 47999999999999876 9999999999999999998874

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=5.3e-57  Score=427.55  Aligned_cols=220  Identities=29%  Similarity=0.482  Sum_probs=209.9

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCc
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSY  420 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~  420 (566)
                      +++++|++|.|+    ++.+++|+||+|++||+++++|||||||||+||+|.++++|++|+|+++|+++.. ....+|++
T Consensus         1 MI~~~nvsk~y~----~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~   76 (309)
T COG1125           1 MIEFENVSKRYG----NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRK   76 (309)
T ss_pred             CceeeeeehhcC----CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHh
Confidence            478999999997    6789999999999999999999999999999999999999999999999999976 45678999


Q ss_pred             eEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCC--ccccCcCcCChhHHHHHHHHHHHcCCCCE
Q psy7366         421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGH--YSDREVRTLSGGNKRKLSTAIALLGNPPL  498 (566)
Q Consensus       421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~LSgGqkqrv~la~al~~~p~l  498 (566)
                      ||||-|...|||++||.||+.+...+.++++...+++++++|+.+||++  +.+|+|++|||||||||.+||||+.+|++
T Consensus        77 IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~i  156 (309)
T COG1125          77 IGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPI  156 (309)
T ss_pred             hhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCe
Confidence            9999999999999999999999888888888889999999999999974  89999999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         499 IFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       499 llLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      ||+||||++|||.+|..+.+.+.++.++ |+|||+||||++|+.+++|||.+|++|+++..++|+++.
T Consensus       157 lLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il  224 (309)
T COG1125         157 LLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEIL  224 (309)
T ss_pred             EeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHH
Confidence            9999999999999999999999999877 999999999999999999999999999999999998764

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.6e-56  Score=436.69  Aligned_cols=223  Identities=27%  Similarity=0.489  Sum_probs=209.4

Q ss_pred             eEEEeeeEEEeCCc-CCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC----chHH
Q psy7366         342 VLVVKRLFKIYANS-KGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD----SMDL  416 (566)
Q Consensus       342 ~l~~~~l~~~y~~~-~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~----~~~~  416 (566)
                      +|++++++|.|... .+...+|+||||+|++|||+||+|+||||||||+|||.++.+|++|+|.++|+++..    ..+.
T Consensus         1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~   80 (339)
T COG1135           1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ   80 (339)
T ss_pred             CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence            47899999999752 223569999999999999999999999999999999999999999999999988854    3456


Q ss_pred             hcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCC
Q psy7366         417 VRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNP  496 (566)
Q Consensus       417 ~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p  496 (566)
                      .|++||++||+++|+...||++|++|+..+.+.++.+.++++.++++.+||.+..+++|.+|||||||||+|||||+.+|
T Consensus        81 ~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P  160 (339)
T COG1135          81 LRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNP  160 (339)
T ss_pred             HHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCC
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         497 PLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       497 ~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      +|||+|||||+|||.+.+.|+++|+++.++ |.||++|||.|+.+.++||||.+|++|++++.|+..++
T Consensus       161 ~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~v  229 (339)
T COG1135         161 KILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEV  229 (339)
T ss_pred             CEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHh
Confidence            999999999999999999999999999876 99999999999999999999999999999999998765

>KOG0054|consensus

Probab=100.00  E-value=1.8e-54  Score=498.24  Aligned_cols=217  Identities=23%  Similarity=0.309  Sum_probs=187.0

Q ss_pred             CCCCCeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chH
Q psy7366         337 ADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMD  415 (566)
Q Consensus       337 ~~~~~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~  415 (566)
                      +|.+..|+++|++.+|..  +...||+||||+|++||.+||+|..|||||||+.+|.++..|.+|+|.+||.++.. ...
T Consensus      1133 WP~~G~I~f~~~~~RYrp--~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~ 1210 (1381)
T KOG0054|consen 1133 WPSKGEIEFEDLSLRYRP--NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLH 1210 (1381)
T ss_pred             CCCCCeEEEEEeEEEeCC--CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHH
Confidence            344457999999999963  45689999999999999999999999999999999999999999999999999977 567


Q ss_pred             HhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCC-------cccc----CcCcCChhHHH
Q psy7366         416 LVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGH-------YSDR----EVRTLSGGNKR  484 (566)
Q Consensus       416 ~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~----~~~~LSgGqkq  484 (566)
                      .+|++++.+||||.+|.+ |++.|+.-+..+       .++.+-++|+..+|.+       .+|.    -..++|-||||
T Consensus      1211 dLRsrlsIIPQdPvLFsG-TvR~NLDPf~e~-------sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQ 1282 (1381)
T KOG0054|consen 1211 DLRSRLSIIPQDPVLFSG-TVRFNLDPFDEY-------SDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQ 1282 (1381)
T ss_pred             HHHhcCeeeCCCCceecC-ccccccCccccc-------CHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHH
Confidence            889999999999999998 999998643221       1233455666655522       2333    34579999999


Q ss_pred             HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         485 KLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       485 rv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      .++|||||+++++||+|||.|+++|+++-..|.+.|++.-+ ++|||.|.|.++.+.+ ||||+||++|++++.|+|.+|
T Consensus      1283 LlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~-dcTVltIAHRl~TVmd-~DrVlVld~G~v~EfdsP~~L 1360 (1381)
T KOG0054|consen 1283 LLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFK-DCTVLTIAHRLNTVMD-SDRVLVLDAGRVVEFDSPAEL 1360 (1381)
T ss_pred             HHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhc-CCeEEEEeeccchhhh-cCeEEEeeCCeEeecCChHHH
Confidence            99999999999999999999999999999999999987433 7999999999999998 899999999999999999987


Q ss_pred             c
Q psy7366         565 K  565 (566)
Q Consensus       565 ~  565 (566)
                      .
T Consensus      1361 l 1361 (1381)
T KOG0054|consen 1361 L 1361 (1381)
T ss_pred             H
Confidence            5

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=1.1e-54  Score=410.28  Aligned_cols=222  Identities=26%  Similarity=0.446  Sum_probs=207.3

Q ss_pred             CCeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc----hH
Q psy7366         340 GDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS----MD  415 (566)
Q Consensus       340 ~~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~----~~  415 (566)
                      ...+++++++++|+    ++.+++|+||+|++||+++|+||||||||||||+|.|+++|++|+|+++|+++...    ..
T Consensus         6 ~~~I~vr~v~~~fG----~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~   81 (263)
T COG1127           6 EPLIEVRGVTKSFG----DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELY   81 (263)
T ss_pred             cceEEEeeeeeecC----CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHH
Confidence            35799999999997    78899999999999999999999999999999999999999999999999998642    23


Q ss_pred             HhcCceEEEecCCCCCCCCCHHHHHHHHHHh-cCCCchHHHHHHHHHHHHcCCCCc-cccCcCcCChhHHHHHHHHHHHc
Q psy7366         416 LVRSYIGYCPQFDALNDRLTPREHLEFYSRV-RNVPSVLLNTIVNESLNKFALGHY-SDREVRTLSGGNKRKLSTAIALL  493 (566)
Q Consensus       416 ~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgGqkqrv~la~al~  493 (566)
                      .+++++|++||+-.||..+||+||+.|+.+- ...++...++.+..-|+.+||... .++.|++|||||++|++||||++
T Consensus        82 ~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAia  161 (263)
T COG1127          82 EIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIA  161 (263)
T ss_pred             HHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHh
Confidence            5788999999999999999999999998754 467788888889999999999876 89999999999999999999999


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         494 GNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       494 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      .+|+||++||||+||||.+...+-++|+++++. |.|+++||||++.+..+|||++++.+|+|+..|+++++.
T Consensus       162 ldPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~  234 (263)
T COG1127         162 LDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELL  234 (263)
T ss_pred             cCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHH
Confidence            999999999999999999999999999999887 999999999999999999999999999999999999874

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=100.00  E-value=2.2e-54  Score=422.11  Aligned_cols=220  Identities=30%  Similarity=0.447  Sum_probs=202.4

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCc
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSY  420 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~  420 (566)
                      +++++|+++.|+    ++++++|+||+|++||+++|+||||||||||||+|+|+++|.+|+|+++|+++.. ..+.+.++
T Consensus         2 ~L~~~~ls~~y~----~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~   77 (258)
T COG1120           2 MLEVENLSFGYG----GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKK   77 (258)
T ss_pred             eeEEEEEEEEEC----CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhh
Confidence            589999999997    6889999999999999999999999999999999999999999999999999976 56677889


Q ss_pred             eEEEecCCCCCCCCCHHHHHHHHHHh----cCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCC
Q psy7366         421 IGYCPQFDALNDRLTPREHLEFYSRV----RNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNP  496 (566)
Q Consensus       421 i~~v~q~~~l~~~~tv~e~l~~~~~~----~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p  496 (566)
                      ++||||.+....++||+|.+.++..-    ...+.+++++.+.++|+.+++.++.++++.+|||||||||.|||||+++|
T Consensus        78 ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~  157 (258)
T COG1120          78 LAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQET  157 (258)
T ss_pred             EEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCC
Confidence            99999998888889999999876322    22334555668999999999999999999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         497 PLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       497 ~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      ++|||||||++||+..+.++++++++++++ |.|||+++||++.+.++||++++|++|+++..|+|+++.
T Consensus       158 ~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl  227 (258)
T COG1120         158 PILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL  227 (258)
T ss_pred             CEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence            999999999999999999999999999855 999999999999999999999999999999999998763

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=100.00  E-value=6.7e-55  Score=399.83  Aligned_cols=221  Identities=36%  Similarity=0.546  Sum_probs=210.7

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCce
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYI  421 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i  421 (566)
                      ++++.+++|+|+.   ...+++||||+++.|+++||+|||||||||+||+|++++.|++|.|+++|.+..+.+...|++|
T Consensus         1 Ml~v~~l~K~y~~---~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~I   77 (245)
T COG4555           1 MLEVTDLTKSYGS---KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKI   77 (245)
T ss_pred             CeeeeehhhhccC---HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhc
Confidence            5789999999973   3448999999999999999999999999999999999999999999999999988777889999


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEE
Q psy7366         422 GYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFL  501 (566)
Q Consensus       422 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllL  501 (566)
                      |.++.+..+|..||++|||.|+..++++...+.+++..++.++|+|.+.+++++..||.||||||+|||||+++|++++|
T Consensus        78 GVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vl  157 (245)
T COG4555          78 GVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVL  157 (245)
T ss_pred             ceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEE
Confidence            99998888999999999999999999999888899999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         502 DEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       502 DEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      ||||||||..++..+.+.+.+++++|++||++||++++++.+||||+++++|++++.|+++++.
T Consensus       158 DEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~  221 (245)
T COG4555         158 DEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALD  221 (245)
T ss_pred             cCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999988763

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=8.5e-54  Score=410.10  Aligned_cols=207  Identities=28%  Similarity=0.436  Sum_probs=192.5

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCce
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYI  421 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i  421 (566)
                      .+.++++++.|+    ...+|+|+||+|.+||+++|+||||||||||||+|+|+.+|++|+|.++|+++...    ...+
T Consensus         3 ~l~i~~v~~~f~----~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p----~~~~   74 (248)
T COG1116           3 LLEIEGVSKSFG----GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP----GPDI   74 (248)
T ss_pred             eEEEEeeEEEeC----ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC----CCCE
Confidence            588999999997    47899999999999999999999999999999999999999999999999987432    3469


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEE
Q psy7366         422 GYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFL  501 (566)
Q Consensus       422 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllL  501 (566)
                      +||||++.++|.+||.||+.++....+.++.+..+++.++++.+||..+.+++|.+|||||||||+|||||+.+|++|||
T Consensus        75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLl  154 (248)
T COG1116          75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLL  154 (248)
T ss_pred             EEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEE
Confidence            99999999999999999999998877666766777899999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEEC--CEEE
Q psy7366         502 DEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVN--GQFT  556 (566)
Q Consensus       502 DEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~--G~i~  556 (566)
                      ||||++||..++..+.+.+.++.++ ++|||+||||++|+-.++|||++|.+  |+|.
T Consensus       155 DEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~  212 (248)
T COG1116         155 DEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG  212 (248)
T ss_pred             cCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence            9999999999999999999997654 99999999999999999999999998  5553

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=1.6e-53  Score=433.53  Aligned_cols=220  Identities=29%  Similarity=0.468  Sum_probs=205.1

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCc
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSY  420 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~  420 (566)
                      ..++++|++|.|+    +..+++|+||+|++||+++|+||||||||||||+|+|+..|++|+|.++|++++..+. .++.
T Consensus         4 ~~l~i~~v~k~yg----~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp-~kR~   78 (352)
T COG3842           4 PALEIRNVSKSFG----DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPP-EKRP   78 (352)
T ss_pred             ceEEEEeeeeecC----CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-hhcc
Confidence            4689999999997    6789999999999999999999999999999999999999999999999999987433 3567


Q ss_pred             eEEEecCCCCCCCCCHHHHHHHHHHhcC-CCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEE
Q psy7366         421 IGYCPQFDALNDRLTPREHLEFYSRVRN-VPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLI  499 (566)
Q Consensus       421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~ll  499 (566)
                      ||+|||+..|||.|||+||+.|+.+... .++.+..+++.++++.++|.++.+++|++|||||||||+|||||+.+|++|
T Consensus        79 ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vL  158 (352)
T COG3842          79 IGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVL  158 (352)
T ss_pred             cceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchh
Confidence            9999999999999999999999988544 334557789999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         500 FLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       500 lLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      |||||.|+||...|..+...++++.++ |.|.|+||||.+++..++|||++|++|+|...|+|+++.
T Consensus       159 LLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY  225 (352)
T COG3842         159 LLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIY  225 (352)
T ss_pred             hhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHh
Confidence            999999999999999999999999876 999999999999999999999999999999999999873

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=100.00  E-value=5.5e-53  Score=427.46  Aligned_cols=219  Identities=27%  Similarity=0.434  Sum_probs=207.0

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCce
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYI  421 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i  421 (566)
                      .|+++|++|.|+.    ..+++++||+|++||+++|+||||||||||||+|+|+.+|++|+|.++|++++..... ++.|
T Consensus         3 ~i~l~~v~K~yg~----~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~-~R~i   77 (338)
T COG3839           3 ELELKNVRKSFGS----FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPE-KRGI   77 (338)
T ss_pred             EEEEeeeEEEcCC----ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh-HCCE
Confidence            5899999999972    2299999999999999999999999999999999999999999999999999873333 4679


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEE
Q psy7366         422 GYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFL  501 (566)
Q Consensus       422 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllL  501 (566)
                      ++|||+..+||.|||+||+.|+.+..+.++.+.++++.+..+.+++.++++++|.+|||||||||+|||||+.+|+++||
T Consensus        78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~  157 (338)
T COG3839          78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLL  157 (338)
T ss_pred             EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEe
Confidence            99999999999999999999999998888889999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         502 DEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       502 DEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      |||+|+||...+..+...|+++.++ |.|+|+||||..|+..++||+++|++|+|...|+|.++.
T Consensus       158 DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely  222 (338)
T COG3839         158 DEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELY  222 (338)
T ss_pred             cCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHh
Confidence            9999999999999999999998876 999999999999999999999999999999999998874

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=2.2e-52  Score=400.36  Aligned_cols=214  Identities=25%  Similarity=0.392  Sum_probs=191.2

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc-----hHH
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS-----MDL  416 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-----~~~  416 (566)
                      +++++|++|.|..+.....+|+++||+|++||+++|+|||||||||||++|.|+.+|++|.|+++|.++...     ...
T Consensus         1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~   80 (226)
T COG1136           1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKL   80 (226)
T ss_pred             CcEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHH
Confidence            367999999997543345799999999999999999999999999999999999999999999999988642     123


Q ss_pred             hcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccc-cCcCcCChhHHHHHHHHHHHcCC
Q psy7366         417 VRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSD-REVRTLSGGNKRKLSTAIALLGN  495 (566)
Q Consensus       417 ~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgGqkqrv~la~al~~~  495 (566)
                      .+++||||||+++|.+++||.||+.++..+.+.+.....+++.++++.+|+.+..+ ++|.+|||||||||+|||||+.+
T Consensus        81 R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~  160 (226)
T COG1136          81 RRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINN  160 (226)
T ss_pred             HHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcC
Confidence            45789999999999999999999999887776665455677889999999986666 88999999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEE
Q psy7366         496 PPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFT  556 (566)
Q Consensus       496 p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~  556 (566)
                      |++||+||||.+||..+.+.+++++.++.++ |+||||||||.+.+. +|||++.|.+|++.
T Consensus       161 P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~-~~dr~i~l~dG~~~  221 (226)
T COG1136         161 PKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAK-YADRVIELKDGKIE  221 (226)
T ss_pred             CCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH-hCCEEEEEeCCeee
Confidence            9999999999999999999999999999876 999999999987665 79999999999954

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=1.9e-52  Score=424.96  Aligned_cols=221  Identities=43%  Similarity=0.711  Sum_probs=205.6

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCce
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYI  421 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i  421 (566)
                      .++++|++|.|+.   ++.+|+||||+|++|+++||+||||||||||+|+|+|+++|++|+|.++|.++.......++++
T Consensus         4 ~i~~~~l~k~~~~---~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~i   80 (293)
T COG1131           4 VIEVRNLTKKYGG---DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRI   80 (293)
T ss_pred             eeeecceEEEeCC---CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhhe
Confidence            5789999999962   3789999999999999999999999999999999999999999999999998876566678889


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEE
Q psy7366         422 GYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFL  501 (566)
Q Consensus       422 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllL  501 (566)
                      ||+||++.+++.+|++||+.|+..+++.+.....++++++++.++|.+..++++.+||+|||||+.||+||+.+|++|||
T Consensus        81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliL  160 (293)
T COG1131          81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLIL  160 (293)
T ss_pred             EEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence            99999999999999999999999988766545567899999999999866889999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhCC-cEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         502 DEPTSGMDPGARRFLWTCIERAVSEG-RCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       502 DEPt~gLD~~~~~~l~~~l~~~~~~g-~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      ||||+||||.++..++++|++++++| +|||++||.++++..+||||++|++|++++.|+++++.
T Consensus       161 DEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~  225 (293)
T COG1131         161 DEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELK  225 (293)
T ss_pred             CCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHH
Confidence            99999999999999999999999886 89999999999999999999999999999999887653

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=7.5e-53  Score=396.72  Aligned_cols=221  Identities=25%  Similarity=0.398  Sum_probs=203.9

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC----chHHh
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD----SMDLV  417 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~----~~~~~  417 (566)
                      +|+++|+++.|+   +++.+|++|||+|++||+++|+||||||||||||+|.|+..|++|+|.++|.++..    ..+.+
T Consensus         3 ~i~~~nl~k~yp---~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~   79 (258)
T COG3638           3 MIEVKNLSKTYP---GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKL   79 (258)
T ss_pred             eEEEeeeeeecC---CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHH
Confidence            689999999996   37889999999999999999999999999999999999999999999999988754    24567


Q ss_pred             cCceEEEecCCCCCCCCCHHHHHHHHH--------HhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHH
Q psy7366         418 RSYIGYCPQFDALNDRLTPREHLEFYS--------RVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTA  489 (566)
Q Consensus       418 ~~~i~~v~q~~~l~~~~tv~e~l~~~~--------~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la  489 (566)
                      |++|||+||.+++.+.+||.+|+..+.        .+.++..++.+..+.++|+++|+.+.+.++.++|||||||||+||
T Consensus        80 r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIA  159 (258)
T COG3638          80 RRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIA  159 (258)
T ss_pred             HHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHH
Confidence            889999999999999999999997642        334566667788899999999999999999999999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         490 IALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       490 ~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      |||+++|+++|.|||+++|||.+.+.+++.|+++.++ |.|||+..|+++.+.++|||++-|++|+|+++|+++++.
T Consensus       160 RaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~el~  236 (258)
T COG3638         160 RALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELT  236 (258)
T ss_pred             HHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCChhhhh
Confidence            9999999999999999999999999999999999765 999999999999999999999999999999999998763

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.1e-52  Score=406.00  Aligned_cols=218  Identities=27%  Similarity=0.455  Sum_probs=192.1

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCc
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSY  420 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~  420 (566)
                      .+++++|+++.|+    +.++|+||||+|++|++++|+||||||||||+|+|+|+++|++|+|.+.|++.....  .+.+
T Consensus         3 ~~i~v~nl~v~y~----~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~--~~~~   76 (254)
T COG1121           3 PMIEVENLTVSYG----NRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRR--KRLR   76 (254)
T ss_pred             cEEEEeeeEEEEC----CEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccc--cCCe
Confidence            3689999999997    236999999999999999999999999999999999999999999999998865421  1467


Q ss_pred             eEEEecCCC--CCCCCCHHHHHHHHHH----hcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcC
Q psy7366         421 IGYCPQFDA--LNDRLTPREHLEFYSR----VRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLG  494 (566)
Q Consensus       421 i~~v~q~~~--l~~~~tv~e~l~~~~~----~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~  494 (566)
                      ||||||...  .-...||+|.+.++..    +.+...+.+++.++++|+++|+.++.++++++|||||+|||.|||||+.
T Consensus        77 IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~  156 (254)
T COG1121          77 IGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQ  156 (254)
T ss_pred             EEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhcc
Confidence            999999643  2334799999987522    1223344557889999999999999999999999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         495 NPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       495 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      +|++|+|||||+|+|+.++..++++|++++++|+|||+||||++.+..+||+|+.|+ +++.+.|+++++.
T Consensus       157 ~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~~  226 (254)
T COG1121         157 NPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEVL  226 (254)
T ss_pred             CCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhcc
Confidence            999999999999999999999999999999889999999999999999999999996 5788999988763

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=100.00  E-value=6e-52  Score=424.91  Aligned_cols=221  Identities=37%  Similarity=0.634  Sum_probs=204.2

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCc
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSY  420 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~  420 (566)
                      .+++++|++|.|+    ++.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|.++.......+++
T Consensus         6 ~~i~i~~l~k~~~----~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~   81 (306)
T PRK13537          6 APIDFRNVEKRYG----DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQR   81 (306)
T ss_pred             ceEEEEeEEEEEC----CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhc
Confidence            4799999999996    467999999999999999999999999999999999999999999999999986544456788


Q ss_pred             eEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEE
Q psy7366         421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIF  500 (566)
Q Consensus       421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lll  500 (566)
                      +||+||++.+++.+|+.||+.++...++.+......++.++++.+++.+..++++.+||||||||++||+||+.+|++||
T Consensus        82 ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lll  161 (306)
T PRK13537         82 VGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLV  161 (306)
T ss_pred             EEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEE
Confidence            99999999999999999999987766665555556678899999999988999999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         501 LDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       501 LDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      |||||+|||+.++..++++|++++++|+|||++||+++++..+|||+++|++|++++.|+++++.
T Consensus       162 LDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~  226 (306)
T PRK13537        162 LDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALI  226 (306)
T ss_pred             EeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            99999999999999999999999877999999999999999999999999999999999988763

>KOG0927|consensus

Probab=100.00  E-value=1.5e-52  Score=432.74  Aligned_cols=388  Identities=23%  Similarity=0.295  Sum_probs=273.5

Q ss_pred             hhHHHHHHHHHHHcCCC-cccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCC-E
Q psy7366          65 VLLNTIVNESLNKFALG-HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGR-C  142 (566)
Q Consensus        65 ~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~-t  142 (566)
                      ..++.++.++|..+|.. +..++.+.+|||||+.|++|||+|..+|++|+|||||||||++++.||.+.|.+.   .+ +
T Consensus       195 ~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~---d~~~  271 (614)
T KOG0927|consen  195 DTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKY---DRII  271 (614)
T ss_pred             hhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhc---cCce
Confidence            34566788888888875 5789999999999999999999999999999999999999999999999999865   34 8


Q ss_pred             EEEecCChhHHHhhcCEEEEEeCCE-EEEecChhHHHhhccCccccCCCCCCCCccchhHHH-hhccCCCCccccCCCcc
Q psy7366         143 VILTSHNMEECEALCTKLTIMVNGQ-FTCLGSATHLKSKSMALPVSGNDLGRGDPVRSELSR-ALNDGSGSGIRNSARPE  220 (566)
Q Consensus       143 viiisH~~~~~~~~~d~i~vl~~G~-i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  220 (566)
                      +|+++|.-+++..+|++|+-|++++ +.+.|+++.......+                 +.+ .+.....          
T Consensus       272 lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~Gnydqy~~tr~E-----------------~~~~q~K~~~k----------  324 (614)
T KOG0927|consen  272 LVIVSHSQDFLNGVCTNIIHLDNKKLIYYEGNYDQYVKTRSE-----------------LEENQMKAYEK----------  324 (614)
T ss_pred             EEEEecchhhhhhHhhhhheecccceeeecCCHHHHhhHHHH-----------------HhHHHHHHHHH----------
Confidence            9999999999999999999999999 5577888775432111                 100 0000000          


Q ss_pred             cccccccccCCccchhhhhhhHHHHHHHHHHHHhhhhheeeccCCeeeeeeccchhhchHHHHHHHHHHHHHHHHHHHHH
Q psy7366         221 VSGFYNENIDGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNGTRLVAVNIWAWRIIGKNLTCMACHGALYSAINLSI  300 (566)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (566)
                                        .+.++-+...+..   .+..+               +. ..+.       .       ..+.
T Consensus       325 ------------------qqk~i~~~K~~ia---~~g~g---------------~a-~~~r-------k-------a~s~  353 (614)
T KOG0927|consen  325 ------------------QQKQIAHMKDLIA---RFGHG---------------SA-KLGR-------K-------AQSK  353 (614)
T ss_pred             ------------------HHhHHHHhhHHHH---hhccc---------------ch-hhhH-------H-------Hhhh
Confidence                              0000000000000   00000               00 0000       0       0000


Q ss_pred             HHHHHhhhhcccccCCCCCCCcchhHHHHHHhhhcCCCCCCeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcC
Q psy7366         301 EYKVFSRCFTRSNLHPVPVSLEEDDVRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGL  380 (566)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~  380 (566)
                      + +...+...    ...........+..-+. ...+.-+.+.+.++|+++.|..   +..++++++|-|..++.++++||
T Consensus       354 ~-K~~~km~~----~gL~ek~~~~k~l~~~f-~~vg~~p~pvi~~~nv~F~y~~---~~~iy~~l~fgid~~srvAlVGP  424 (614)
T KOG0927|consen  354 E-KTLDKMEA----DGLTEKVVGEKVLSFRF-PEVGKIPPPVIMVQNVSFGYSD---NPMIYKKLNFGIDLDSRVALVGP  424 (614)
T ss_pred             h-hhHHHHhh----ccccccccCCceEEEEc-ccccCCCCCeEEEeccccCCCC---cchhhhhhhcccCcccceeEecC
Confidence            0 00000000    00000000000000000 0111223467999999999974   34789999999999999999999


Q ss_pred             CCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCC--CCCCCCCHHHHHHHHHHhcCCCchHHHHHH
Q psy7366         381 NGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFD--ALNDRLTPREHLEFYSRVRNVPSVLLNTIV  458 (566)
Q Consensus       381 NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~--~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~  458 (566)
                      ||+|||||||+++|.+.|..|.|.-.-..          ++++.-|+.  .+.-+.++.|++.-.     .+.....+.+
T Consensus       425 NG~GKsTLlKl~~gdl~p~~G~vs~~~H~----------~~~~y~Qh~~e~ldl~~s~le~~~~~-----~~~~~~~e~~  489 (614)
T KOG0927|consen  425 NGAGKSTLLKLITGDLQPTIGMVSRHSHN----------KLPRYNQHLAEQLDLDKSSLEFMMPK-----FPDEKELEEM  489 (614)
T ss_pred             CCCchhhhHHHHhhccccccccccccccc----------cchhhhhhhHhhcCcchhHHHHHHHh-----ccccchHHHH
Confidence            99999999999999999999998654332          466667763  345556777765422     1222345668


Q ss_pred             HHHHHHcCCC-CccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCH
Q psy7366         459 NESLNKFALG-HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM  537 (566)
Q Consensus       459 ~~~l~~~~l~-~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~  537 (566)
                      +.++.+|||. +....++++||+|||.||.+|+.++..|.+|||||||+|||..+...+.+.|+++   ..+||++|||+
T Consensus       490 r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDf  566 (614)
T KOG0927|consen  490 RSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDF  566 (614)
T ss_pred             HHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechh
Confidence            8999999997 6678899999999999999999999999999999999999999999999999887   67899999999


Q ss_pred             HHHHhhCCEEEEEECCEEEE-ecC
Q psy7366         538 EECEALCTKLTIMVNGQFTC-LGS  560 (566)
Q Consensus       538 ~~~~~~~drv~~l~~G~i~~-~g~  560 (566)
                      ..+.++++++++..+|.+.. .|+
T Consensus       567 rlI~qVaeEi~~c~~~~~~~~~G~  590 (614)
T KOG0927|consen  567 RLISQVAEEIWVCENGTVTKWDGD  590 (614)
T ss_pred             hHHHHHHHHhHhhccCceeecCcc
Confidence            99999999999999887643 344

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=100.00  E-value=1.5e-52  Score=381.19  Aligned_cols=217  Identities=26%  Similarity=0.396  Sum_probs=205.4

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC----chHHh
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD----SMDLV  417 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~----~~~~~  417 (566)
                      +|+++|++|.|+.   ++.+|+|+||+|++||++-|+||||||||||||+|++..+|++|+|+++|.++..    ....+
T Consensus         1 mI~f~~V~k~Y~~---g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~L   77 (223)
T COG2884           1 MIRFENVSKAYPG---GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFL   77 (223)
T ss_pred             CeeehhhhhhcCC---CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchh
Confidence            4789999999984   5779999999999999999999999999999999999999999999999999864    34568


Q ss_pred             cCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCC
Q psy7366         418 RSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPP  497 (566)
Q Consensus       418 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~  497 (566)
                      |++||+||||..+.+..||+||++|+....+.+..+.++++.++|+.+||.+..+..|.+|||||||||+||||++.+|+
T Consensus        78 RR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~  157 (223)
T COG2884          78 RRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPA  157 (223)
T ss_pred             hheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCC
Confidence            89999999999999999999999999999899998999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCc
Q psy7366         498 LIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSA  561 (566)
Q Consensus       498 lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~  561 (566)
                      +||.||||.+|||.....+++++.++.+.|.||||+|||.+.+..+--|++.+++|+++.+...
T Consensus       158 vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~~  221 (223)
T COG2884         158 VLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESR  221 (223)
T ss_pred             eEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecccc
Confidence            9999999999999999999999999999999999999999999999999999999999877543

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=100.00  E-value=9.5e-51  Score=462.10  Aligned_cols=369  Identities=22%  Similarity=0.312  Sum_probs=274.3

Q ss_pred             CCCCCHHHHHHHHHHhcCCChh----------hHHHHHHHHHHHcCCCcc-cccccccCChhHHHHHHHHHHHhCCC--C
Q psy7366          44 NDRLTPREHLEFYSRVRNVPSV----------LLNTIVNESLNKFALGHY-SDREVRTLSGGNKRKLSTAIALLGNP--P  110 (566)
Q Consensus        44 ~~~~tv~e~l~~~~~~~~~~~~----------~~~~~~~~~l~~~gl~~~-~~~~~~~LSgG~kqrl~iA~al~~~p--~  110 (566)
                      +..++|.|.+.|.. ..+.+..          ++.++++ +|+.+||++. +++++.+|||||+|||+||+||+.+|  +
T Consensus       434 ~~~~~v~~~~~~~~-~~~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~  511 (943)
T PRK00349        434 VSELSIGEALEFFE-NLKLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGV  511 (943)
T ss_pred             HhcCcHHHHHHHHH-hcCCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCc
Confidence            45689999999843 3333332          3455664 7899999876 89999999999999999999999997  9


Q ss_pred             EEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHHhhcCEEEEE------eCCEEEEecChhHHHhhccCc
Q psy7366         111 LIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIM------VNGQFTCLGSATHLKSKSMAL  184 (566)
Q Consensus       111 vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~~~d~i~vl------~~G~i~~~g~~~~~~~~~~~~  184 (566)
                      +|||||||++|||.++++|.++|+++++.|.|||+|||+++++. .||||++|      ++|++++.|+++++.......
T Consensus       512 llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~-~aD~vi~LgpgaG~~~G~iv~~g~~~e~~~~~~~l  590 (943)
T PRK00349        512 LYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIR-AADYIVDIGPGAGVHGGEVVASGTPEEIMKNPNSL  590 (943)
T ss_pred             EEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEEEeccccCCCCCEEeeccCHHHHhcChhhe
Confidence            99999999999999999999999999888999999999999987 59999999      999999999988864210000


Q ss_pred             cccCCCCCCCCccchhHHHhhccCCCCccccCCCcccccccccccCCccchhhhhhhHHHHHHHHHHHHhhhhheeeccC
Q psy7366         185 PVSGNDLGRGDPVRSELSRALNDGSGSGIRNSARPEVSGFYNENIDGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSN  264 (566)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (566)
                      .             .   ..+...                                                        
T Consensus       591 ~-------------~---~~l~~~--------------------------------------------------------  598 (943)
T PRK00349        591 T-------------G---QYLSGK--------------------------------------------------------  598 (943)
T ss_pred             e-------------e---hhhccc--------------------------------------------------------
Confidence            0             0   000000                                                        


Q ss_pred             CeeeeeeccchhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCcchhHHHHHHhhhcCCCCCCeEE
Q psy7366         265 GTRLVAVNIWAWRIIGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNLHPVPVSLEEDDVRKERERVEHGADSGDVLV  344 (566)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  344 (566)
                                                                        ....    .+.   .. .    ......|+
T Consensus       599 --------------------------------------------------~~~~----~~~---~~-~----~~~~~~L~  616 (943)
T PRK00349        599 --------------------------------------------------KKIE----VPK---ER-R----KGNGKFLK  616 (943)
T ss_pred             --------------------------------------------------cccc----ccc---cc-c----CCCcceEE
Confidence                                                              0000    000   00 0    00113578


Q ss_pred             EeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHH---------CCCCCCcc------------EE
Q psy7366         345 VKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT---------GAIKPTSG------------NA  403 (566)
Q Consensus       345 ~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~---------G~~~~~~G------------~i  403 (566)
                      +++++.         ..|+|+||+|++|++++|+|+||||||||++.+.         +...+..+            -|
T Consensus       617 v~~l~~---------~~L~~isl~Ip~GeivgVtGvsGSGKSTLl~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v  687 (943)
T PRK00349        617 LKGARE---------NNLKNVDVEIPLGKFTCVTGVSGSGKSTLINETLYKALARKLNGAKKVPGKHKEIEGLEHLDKVI  687 (943)
T ss_pred             ecCCcc---------CCcCceEEEEeCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHhcccccCCCCCcccccccCCCceE
Confidence            888852         2589999999999999999999999999998763         21111111            23


Q ss_pred             EEcCccCCCc--------------hHHhc------CceEEEecCCCCCC-------------------------------
Q psy7366         404 YVMNHSIRDS--------------MDLVR------SYIGYCPQFDALND-------------------------------  432 (566)
Q Consensus       404 ~~~g~~~~~~--------------~~~~~------~~i~~v~q~~~l~~-------------------------------  432 (566)
                      .++-.++..+              .+.+.      +..||.++.++++.                               
T Consensus       688 ~vdQ~pig~~~RS~~~Ty~g~~d~iR~lfa~~~~a~~~g~~~~~FS~N~~~G~C~~C~G~G~~~~~~~f~~~~~~~C~~C  767 (943)
T PRK00349        688 DIDQSPIGRTPRSNPATYTGVFDPIRELFAGTPEAKARGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCDVC  767 (943)
T ss_pred             EEecCCCCCCCCCCceeeccccHHHHHHhccCccccccCCCcccCCCCCCCCCCCcccccceEEEEeccCCCccccCccc
Confidence            3443332110              01110      12333333322221                               


Q ss_pred             -----------------------CCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCC-ccccCcCcCChhHHHHHHH
Q psy7366         433 -----------------------RLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGH-YSDREVRTLSGGNKRKLST  488 (566)
Q Consensus       433 -----------------------~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqrv~l  488 (566)
                                             ++|+.|++.|+.....      .....+.++.++|.. .+++++.+|||||+||+.|
T Consensus       768 ~G~R~~~e~l~v~~~g~~i~dvl~ltv~E~l~~f~~~~~------i~~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~L  841 (943)
T PRK00349        768 KGKRYNRETLEVKYKGKNIADVLDMTVEEALEFFEAIPK------IARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKL  841 (943)
T ss_pred             cCccccccceEEEECCCCHHHHhcCcHHHHHHHHHhchh------hhHHHHHHHHCCCCcccccCCcccCCHHHHHHHHH
Confidence                                   3678888877654321      123467899999986 4799999999999999999


Q ss_pred             HHHHcCCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEE------ECCEEEEec
Q psy7366         489 AIALLGNP---PLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIM------VNGQFTCLG  559 (566)
Q Consensus       489 a~al~~~p---~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l------~~G~i~~~g  559 (566)
                      |++|+.+|   +++||||||+|||+..+..++++|+++.++|.|||++||+++++. .||++++|      ++|++++.|
T Consensus       842 AraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~-~aD~ii~Lgp~~G~~~G~Iv~~G  920 (943)
T PRK00349        842 AKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK-TADWIIDLGPEGGDGGGEIVATG  920 (943)
T ss_pred             HHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEecCCcCCCCCEEEEeC
Confidence            99999999   999999999999999999999999999888999999999999985 69999999      799999999


Q ss_pred             Cccccc
Q psy7366         560 SATHLK  565 (566)
Q Consensus       560 ~~~~l~  565 (566)
                      +++++.
T Consensus       921 t~~el~  926 (943)
T PRK00349        921 TPEEVA  926 (943)
T ss_pred             CHHHHH
Confidence            988764

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=100.00  E-value=1e-51  Score=392.01  Aligned_cols=222  Identities=28%  Similarity=0.447  Sum_probs=199.3

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC--chHHhcC
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD--SMDLVRS  419 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~--~~~~~~~  419 (566)
                      +++++|+++.|+......++|++|||+|.+||++||+|++|||||||.++|+|+.+|++|+|.++|+++..  ..+..++
T Consensus         3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~   82 (252)
T COG1124           3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR   82 (252)
T ss_pred             eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence            68999999999843222359999999999999999999999999999999999999999999999987753  2335667


Q ss_pred             ceEEEecCC--CCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCC-CccccCcCcCChhHHHHHHHHHHHcCCC
Q psy7366         420 YIGYCPQFD--ALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALG-HYSDREVRTLSGGNKRKLSTAIALLGNP  496 (566)
Q Consensus       420 ~i~~v~q~~--~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqrv~la~al~~~p  496 (566)
                      .+-+|||||  .+.|.+||.+.|.-+...++.++.  ++++.++++.+||. .+++++|.+|||||+|||+|||||+.+|
T Consensus        83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~--~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~P  160 (252)
T COG1124          83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKS--QQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEP  160 (252)
T ss_pred             ceeEEecCCccccCcchhHHHHHhhhhccCCccHH--HHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCC
Confidence            899999997  489999999999887776665544  34489999999997 5789999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         497 PLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       497 ~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      ++||||||||+||+..+.+++++|.+++++ +.|+|+||||+..+..+|||++||++|++++.++.+++.
T Consensus       161 klLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~  230 (252)
T COG1124         161 KLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELL  230 (252)
T ss_pred             CEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhh
Confidence            999999999999999999999999999876 899999999999999999999999999999999988764

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=3.7e-52  Score=405.05  Aligned_cols=219  Identities=25%  Similarity=0.422  Sum_probs=200.3

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc--hHHhcC
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS--MDLVRS  419 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~--~~~~~~  419 (566)
                      +|.++|+++.|+    ...+++|||++|+.||.++|+|||||||||||++|+|++.|++|+|.++|+.+...  .....+
T Consensus         2 ~i~i~~~~~~~~----~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R   77 (345)
T COG1118           2 SIRINNVKKRFG----AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDR   77 (345)
T ss_pred             ceeehhhhhhcc----cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhc
Confidence            478899999997    67799999999999999999999999999999999999999999999999944321  223356


Q ss_pred             ceEEEecCCCCCCCCCHHHHHHHHHHhcC--CCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCC
Q psy7366         420 YIGYCPQFDALNDRLTPREHLEFYSRVRN--VPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPP  497 (566)
Q Consensus       420 ~i~~v~q~~~l~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~  497 (566)
                      +||||||+..+|+.|||.+||.|+.+...  .++...+.++.++|+.++|+.+.+++|.+|||||||||+|||||+.+|+
T Consensus        78 ~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~  157 (345)
T COG1118          78 KVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPK  157 (345)
T ss_pred             ceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCC
Confidence            89999999999999999999999876542  2345667889999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         498 LIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       498 lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      +||||||+++||...+..+...|+++.++ |.|+|+||||.+|+.++||||++|++|+|...|+++++
T Consensus       158 vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev  225 (345)
T COG1118         158 VLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEV  225 (345)
T ss_pred             eEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHH
Confidence            99999999999999999999999999877 99999999999999999999999999999999999886

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=100.00  E-value=3.5e-51  Score=423.12  Aligned_cols=223  Identities=26%  Similarity=0.416  Sum_probs=201.7

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc-h---HHh
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS-M---DLV  417 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~---~~~  417 (566)
                      +|+++|+++.|+...+...+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++... .   ...
T Consensus         1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~   80 (343)
T TIGR02314         1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA   80 (343)
T ss_pred             CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence            478999999996321234799999999999999999999999999999999999999999999999988642 2   235


Q ss_pred             cCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCC
Q psy7366         418 RSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPP  497 (566)
Q Consensus       418 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~  497 (566)
                      +++|||+||++.+++.+||+||+.++....+.+.....+++.++++.+++.+..++++.+|||||||||+|||||+.+|+
T Consensus        81 r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~  160 (343)
T TIGR02314        81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPK  160 (343)
T ss_pred             hcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCC
Confidence            77899999999999999999999987765555555566778999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         498 LIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       498 lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      +|||||||++||+.++..++++|+++.++ |.|||++|||++.+.++||++++|++|++++.|+++++
T Consensus       161 iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v  228 (343)
T TIGR02314       161 VLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEI  228 (343)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence            99999999999999999999999999875 99999999999999999999999999999999998765

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=1.4e-52  Score=384.18  Aligned_cols=220  Identities=34%  Similarity=0.518  Sum_probs=204.1

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc--hHHhcC
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS--MDLVRS  419 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~--~~~~~~  419 (566)
                      .|.++|+.|+|+    .+.++++|||+|++||++||+|||||||||.+.++.|+.+|++|+|.+++.+++..  ..+.|.
T Consensus         4 ~L~a~~l~K~y~----kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArl   79 (243)
T COG1137           4 TLVAENLAKSYK----KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARL   79 (243)
T ss_pred             EEEehhhhHhhC----CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhc
Confidence            588999999997    67899999999999999999999999999999999999999999999999999863  456678


Q ss_pred             ceEEEecCCCCCCCCCHHHHHHHHHHhcCCCch--HHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCC
Q psy7366         420 YIGYCPQFDALNDRLTPREHLEFYSRVRNVPSV--LLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPP  497 (566)
Q Consensus       420 ~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~  497 (566)
                      .|||+||+++.|..+||.||+.........+.+  +.+.+++++|+.|++.+..+++..+||||||+|+.|||||+.+|+
T Consensus        80 GigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~  159 (243)
T COG1137          80 GIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPK  159 (243)
T ss_pred             CcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCC
Confidence            899999999999999999999887776553333  334457899999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         498 LIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       498 lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      ++||||||+|+||.+..++.++++.++..|..|+++-|+..+...+|||.+++++|++.++|+++++.
T Consensus       160 fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~  227 (243)
T COG1137         160 FILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIV  227 (243)
T ss_pred             EEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999998863

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=100.00  E-value=5.6e-51  Score=422.22  Aligned_cols=221  Identities=37%  Similarity=0.633  Sum_probs=203.0

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCc
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSY  420 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~  420 (566)
                      .+++++|+++.|+    ++.+|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++.......++.
T Consensus        40 ~~i~i~nl~k~y~----~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~  115 (340)
T PRK13536         40 VAIDLAGVSKSYG----DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARAR  115 (340)
T ss_pred             eeEEEEEEEEEEC----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhcc
Confidence            4799999999997    567999999999999999999999999999999999999999999999999986544556788


Q ss_pred             eEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEE
Q psy7366         421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIF  500 (566)
Q Consensus       421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lll  500 (566)
                      +||+||++.+++.+|+.||+.++...++.+.......+.++++.+++.+..++++.+|||||||||+||+||+.+|++||
T Consensus       116 ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLi  195 (340)
T PRK13536        116 IGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLI  195 (340)
T ss_pred             EEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            99999999999999999999887665554444445667889999999998999999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         501 LDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       501 LDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      |||||+||||.++..++++|++++++|.|||++||+++++.++|||+++|++|++++.|+++++.
T Consensus       196 LDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~  260 (340)
T PRK13536        196 LDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALI  260 (340)
T ss_pred             EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            99999999999999999999999878999999999999999999999999999999999988763

>KOG0062|consensus

Probab=100.00  E-value=1.8e-51  Score=422.59  Aligned_cols=376  Identities=20%  Similarity=0.239  Sum_probs=270.1

Q ss_pred             HHHHHHHcCCCc-ccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCC
Q psy7366          71 VNESLNKFALGH-YSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN  149 (566)
Q Consensus        71 ~~~~l~~~gl~~-~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~  149 (566)
                      ..++|..+|++. ...+++.+||||+|-|++|||||..+||+||||||||+||..++.||.+.|..+   +.|+|+||||
T Consensus       178 ~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~---~~T~liVSHD  254 (582)
T KOG0062|consen  178 YDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW---KITSLIVSHD  254 (582)
T ss_pred             HHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC---CceEEEEecc
Confidence            344889999985 668899999999999999999999999999999999999999999999999865   4899999999


Q ss_pred             hhHHHhhcCEEEEEeCCEEE-EecChhHHHhhccCcc-ccCCCCCCCCccchhHHHhhccCCCCccccCCCccccccccc
Q psy7366         150 MEECEALCTKLTIMVNGQFT-CLGSATHLKSKSMALP-VSGNDLGRGDPVRSELSRALNDGSGSGIRNSARPEVSGFYNE  227 (566)
Q Consensus       150 ~~~~~~~~d~i~vl~~G~i~-~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (566)
                      ..|+..+|+.|+-+++=++- +.|+.+++.....+.. .....+.                                   
T Consensus       255 r~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk~k~E~~~n~qrefe-----------------------------------  299 (582)
T KOG0062|consen  255 RNFLNTVCTDIIHLENLKLDYYKGNYSQFVKTKPEAKKNQQREFE-----------------------------------  299 (582)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhcCcHHHHHHhhHHhhhhhhhhcc-----------------------------------
Confidence            99999999999999988874 6688887754321110 0000000                                   


Q ss_pred             ccCCccchhhhhhhHHHHHHHHHHHHhhhhheeeccCCeeeeeeccchhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy7366         228 NIDGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNGTRLVAVNIWAWRIIGKNLTCMACHGALYSAINLSIEYKVFSR  307 (566)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (566)
                              ....+.+........+.|+.-....                                   ++      +..+
T Consensus       300 --------~q~~~R~h~q~fid~FrYna~ra~s-----------------------------------vq------SRIk  330 (582)
T KOG0062|consen  300 --------VQMKYRAHLQVFIDKFRYNAARASS-----------------------------------VQ------SRIK  330 (582)
T ss_pred             --------hHHHHHHHHHHHHHHhccCcccchh-----------------------------------HH------HHHH
Confidence                    0000011111112222221100000                                   00      0000


Q ss_pred             hhcccccCCCCCCCcchhHHH-HHHhh-h-cCCCCCCeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCc
Q psy7366         308 CFTRSNLHPVPVSLEEDDVRK-ERERV-E-HGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAG  384 (566)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~-~~~~~-~-~~~~~~~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsG  384 (566)
                            +-...+...+..... ....+ . .....++.+++.++++.|.-  +..+.+.+++++++.-+.++++|+||+|
T Consensus       331 ------~L~kl~~lk~~~~~~~~~~~fP~~~e~~~~p~l~i~~V~f~y~p--~~y~~~~~~~~d~e~~sRi~~vg~ng~g  402 (582)
T KOG0062|consen  331 ------MLGKLPALKSTLIEVLIGFLFPTEGEVLSPPNLRISYVAFEYTP--SEYQWRKQLGLDRESDSRISRVGENGDG  402 (582)
T ss_pred             ------HhccCCCCCccceecccceecCCCCCcCCCCeeEEEeeeccCCC--cchhhhhccCCccchhhhhheeccCchh
Confidence                  000000000000000 00000 0 11123467999999988863  2336899999999999999999999999


Q ss_pred             HHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q psy7366         385 KTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNK  464 (566)
Q Consensus       385 KSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~  464 (566)
                      |||++|++.|...|.+|.+.+.+          |.+|+|.+|...=+.++++...-.+...+.+.+    ++.+++.+..
T Consensus       403 kst~lKi~~~~l~~~rgi~~~~~----------r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~----~ee~r~hl~~  468 (582)
T KOG0062|consen  403 KSTLLKILKGDLTPTRGIVGRHP----------RLRIKYFAQHHVDFLDKNVNAVDFMEKSFPGKT----EEEIRRHLGS  468 (582)
T ss_pred             HHHHHHHHhccCCcccceeeecc----------cceecchhHhhhhHHHHHhHHHHHHHHhCCCCC----HHHHHHHHHh
Confidence            99999999999999999887765          457999999754333344433222222223332    3456788999


Q ss_pred             cCCC-CccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhh
Q psy7366         465 FALG-HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEAL  543 (566)
Q Consensus       465 ~~l~-~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~  543 (566)
                      ||+. +...+++.+||||||-||++|.+...+|.+|+||||||+||..+...+.+.|+.+   +..||+||||.+++..+
T Consensus       469 ~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd~~fi~~~  545 (582)
T KOG0062|consen  469 FGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHDEEFISSL  545 (582)
T ss_pred             cCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECcHHHHhhc
Confidence            9997 6777889999999999999999999999999999999999999999999888887   67899999999999999


Q ss_pred             CCEEEEEECCEEEEe
Q psy7366         544 CTKLTIMVNGQFTCL  558 (566)
Q Consensus       544 ~drv~~l~~G~i~~~  558 (566)
                      |+.+++.++|++.-.
T Consensus       546 c~E~Wvve~g~vt~i  560 (582)
T KOG0062|consen  546 CKELWVVEDGKVTPI  560 (582)
T ss_pred             CceeEEEcCCcEEee
Confidence            999999999998653

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.2e-50  Score=420.28  Aligned_cols=219  Identities=24%  Similarity=0.401  Sum_probs=200.6

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCce
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYI  421 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i  421 (566)
                      +|+++|+++.|+   +++.+|+|+||+|++||+++|+|||||||||||++|+|+.+|++|+|.++|+++..... .++.|
T Consensus         3 ~l~i~~l~~~~~---~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~-~~r~i   78 (356)
T PRK11650          3 GLKLQAVRKSYD---GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEP-ADRDI   78 (356)
T ss_pred             EEEEEeEEEEeC---CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH-HHCCE
Confidence            589999999993   14679999999999999999999999999999999999999999999999998865322 24689


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEE
Q psy7366         422 GYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFL  501 (566)
Q Consensus       422 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllL  501 (566)
                      |||||++.+|+.+||+||+.+.....+.+..+...++.++++.++|.++.++++.+|||||||||+|||||+.+|++|||
T Consensus        79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLL  158 (356)
T PRK11650         79 AMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLF  158 (356)
T ss_pred             EEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            99999999999999999999887655555555567789999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         502 DEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       502 DEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      ||||++||+.++..+.+.|+++.++ |.|+|+||||++++..+||++++|++|+++..|+++++
T Consensus       159 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~  222 (356)
T PRK11650        159 DEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEV  222 (356)
T ss_pred             eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHH
Confidence            9999999999999999999998776 99999999999999999999999999999999998876

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.3e-50  Score=395.43  Aligned_cols=220  Identities=28%  Similarity=0.437  Sum_probs=205.5

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCC--CchHHhcC
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR--DSMDLVRS  419 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~--~~~~~~~~  419 (566)
                      +++++++++.|+.   +..+|+++||+|++|++++|+|+||||||||+++++|+++|++|+|.++|.++.  .....+++
T Consensus         3 ~i~~~~l~~~y~~---~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~   79 (235)
T COG1122           3 MIEAENLSFRYPG---RKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQ   79 (235)
T ss_pred             eEEEEEEEEEcCC---CceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhc
Confidence            6889999999973   258999999999999999999999999999999999999999999999999886  45667889


Q ss_pred             ceEEEecCCC-CCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCE
Q psy7366         420 YIGYCPQFDA-LNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPL  498 (566)
Q Consensus       420 ~i~~v~q~~~-l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~l  498 (566)
                      ++|||||+|. .+..-||.+.+.|+....+.+.++.++++.++++.+++.++.++++.+|||||||||+||.+|+.+|++
T Consensus        80 ~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~i  159 (235)
T COG1122          80 KVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEI  159 (235)
T ss_pred             ceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCE
Confidence            9999999984 445569999999998888888888889999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         499 IFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       499 llLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      |||||||+|||+.+++.++++++++.++ |+|||++|||++++..+|||+++|++|+++.+|+++++
T Consensus       160 liLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i  226 (235)
T COG1122         160 LLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEI  226 (235)
T ss_pred             EEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHH
Confidence            9999999999999999999999999887 79999999999999999999999999999999998765

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=2.3e-51  Score=386.76  Aligned_cols=217  Identities=33%  Similarity=0.584  Sum_probs=208.4

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCce
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYI  421 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i  421 (566)
                      ++++++++|+|+    ++.+++|+||+|++|++.|++|||||||||.+|+|.|+++|++|+|.|+|.+++.   ..+.+|
T Consensus         2 ~L~ie~vtK~Fg----~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~---~~~~rI   74 (300)
T COG4152           2 ALEIEGVTKSFG----DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ---EIKNRI   74 (300)
T ss_pred             ceEEecchhccC----ceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh---hhhhhc
Confidence            489999999997    7889999999999999999999999999999999999999999999999998854   345689


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEE
Q psy7366         422 GYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFL  501 (566)
Q Consensus       422 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllL  501 (566)
                      ||+|.+..+|+.+||.|.+.|++.+.+++..+.+..+..||+++++.....+++.+||.|++||+.+..+++++|+++||
T Consensus        75 GyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlIL  154 (300)
T COG4152          75 GYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLIL  154 (300)
T ss_pred             ccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         502 DEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       502 DEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      |||||||||.+.+.+.+.+.+++++|.|||++||.|+.++++||++++|++|+.+.+|+.++++
T Consensus       155 DEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir  218 (300)
T COG4152         155 DEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIR  218 (300)
T ss_pred             cCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999988765

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=100.00  E-value=3.4e-50  Score=393.95  Aligned_cols=219  Identities=43%  Similarity=0.635  Sum_probs=197.5

Q ss_pred             EEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceE
Q psy7366         343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIG  422 (566)
Q Consensus       343 l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~  422 (566)
                      |+++|+++.|+    ++.+|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++.......+++++
T Consensus         1 i~~~~~~~~~~----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~   76 (220)
T cd03265           1 IEVENLVKKYG----DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIG   76 (220)
T ss_pred             CEEEEEEEEEC----CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEE
Confidence            46899999996    46799999999999999999999999999999999999999999999999887543344567899


Q ss_pred             EEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEe
Q psy7366         423 YCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLD  502 (566)
Q Consensus       423 ~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLD  502 (566)
                      |+||++.+++.+|+++|+.+.....+.......+.+.++++.+++.+..++++.+||||||||++|||||+.+|++||||
T Consensus        77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllD  156 (220)
T cd03265          77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLD  156 (220)
T ss_pred             EecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            99999999999999999988655444444444567889999999988889999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         503 EPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       503 EPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      |||+|||+.+++.++++|++++++ |.|||++|||++++..+|||+++|++|+++..+++++++
T Consensus       157 EPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  220 (220)
T cd03265         157 EPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEELK  220 (220)
T ss_pred             CCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHcC
Confidence            999999999999999999999876 899999999999999999999999999999999887753

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.7e-50  Score=417.52  Aligned_cols=219  Identities=25%  Similarity=0.415  Sum_probs=202.5

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCc
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSY  420 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~  420 (566)
                      ++|+++|+++.|+    ++.+|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|.++|+++..... .+++
T Consensus         5 ~~l~~~~l~~~~~----~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~-~~r~   79 (351)
T PRK11432          5 NFVVLKNITKRFG----SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI-QQRD   79 (351)
T ss_pred             cEEEEEeEEEEEC----CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH-HHCC
Confidence            4799999999996    4679999999999999999999999999999999999999999999999998865322 3467


Q ss_pred             eEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEE
Q psy7366         421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIF  500 (566)
Q Consensus       421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lll  500 (566)
                      +|||||++.+|+.+||.||+.|....++.+..+..+++.++++.+++.++.++++.+|||||||||+|||||+.+|++||
T Consensus        80 ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLL  159 (351)
T PRK11432         80 ICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLL  159 (351)
T ss_pred             EEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence            99999999999999999999998766555555666789999999999999999999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         501 LDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       501 LDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      |||||++||+..+..+.+.|+++.++ |.|+|+||||.+++..+|||+++|++|+++..|+++++
T Consensus       160 LDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~  224 (351)
T PRK11432        160 FDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQEL  224 (351)
T ss_pred             EcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence            99999999999999999999999776 99999999999999999999999999999999999876

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=100.00  E-value=3.7e-50  Score=418.19  Aligned_cols=219  Identities=27%  Similarity=0.391  Sum_probs=201.9

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCce
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYI  421 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i  421 (566)
                      +|+++|+++.|+    ++.+|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|.++|+++..... .++.+
T Consensus         4 ~l~~~~l~~~~~----~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~-~~r~i   78 (353)
T TIGR03265         4 YLSIDNIRKRFG----AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPP-QKRDY   78 (353)
T ss_pred             EEEEEEEEEEeC----CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH-HHCCE
Confidence            589999999997    4679999999999999999999999999999999999999999999999998865332 35679


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEE
Q psy7366         422 GYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFL  501 (566)
Q Consensus       422 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllL  501 (566)
                      ||+||++.+|+.+||.||+.|+....+.+..+...++.++++.++|.++.++++.+|||||||||+|||||+.+|++|||
T Consensus        79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLL  158 (353)
T TIGR03265        79 GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLL  158 (353)
T ss_pred             EEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            99999999999999999999987655555555667899999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         502 DEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       502 DEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      ||||++||+.++..+.+.|+++.++ |.|+|+||||++++..+|||+++|++|++++.|+++++.
T Consensus       159 DEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~  223 (353)
T TIGR03265       159 DEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIY  223 (353)
T ss_pred             cCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            9999999999999999999998776 999999999999999999999999999999999988763

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=100.00  E-value=4.7e-50  Score=411.15  Aligned_cols=220  Identities=38%  Similarity=0.654  Sum_probs=199.5

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCc
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSY  420 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~  420 (566)
                      .+++++|+++.|+    ++.+|+++||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++.......+++
T Consensus         3 ~~i~~~~l~~~~~----~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~   78 (303)
T TIGR01288         3 VAIDLVGVSKSYG----DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVA   78 (303)
T ss_pred             cEEEEEeEEEEeC----CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhc
Confidence            3689999999996    467999999999999999999999999999999999999999999999999875444455778


Q ss_pred             eEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEE
Q psy7366         421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIF  500 (566)
Q Consensus       421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lll  500 (566)
                      +||+||++.+++.+|+.||+.++...++.+.......+.++++.+++.+..++++.+|||||||||+|||||+.+|++||
T Consensus        79 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll  158 (303)
T TIGR01288        79 IGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLI  158 (303)
T ss_pred             EEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            99999999999999999999876544444444445567889999999988899999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         501 LDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       501 LDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      |||||+|||+.++..++++|++++++|.|||++|||++++..+|||+++|++|+++..|+++++
T Consensus       159 LDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  222 (303)
T TIGR01288       159 LDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHAL  222 (303)
T ss_pred             EeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence            9999999999999999999999987899999999999999999999999999999999998775

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=100.00  E-value=5.2e-50  Score=396.62  Aligned_cols=218  Identities=28%  Similarity=0.448  Sum_probs=195.1

Q ss_pred             EEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc-h---HHhc
Q psy7366         343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS-M---DLVR  418 (566)
Q Consensus       343 l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~---~~~~  418 (566)
                      |+++|+++.|+    ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... .   ...+
T Consensus         1 l~~~~l~~~~~----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~   76 (235)
T cd03261           1 IELRGLTKSFG----GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLR   76 (235)
T ss_pred             CeEEEEEEEEC----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHh
Confidence            46899999996    46799999999999999999999999999999999999999999999999887542 1   3456


Q ss_pred             CceEEEecCCCCCCCCCHHHHHHHHHHhc-CCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCC
Q psy7366         419 SYIGYCPQFDALNDRLTPREHLEFYSRVR-NVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPP  497 (566)
Q Consensus       419 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~  497 (566)
                      +.++|+||++.+++.+|+.||+.+..... ..+.......+.++++.+++.+..++++.+|||||||||+|||||+.+|+
T Consensus        77 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~  156 (235)
T cd03261          77 RRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPE  156 (235)
T ss_pred             cceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence            78999999999999999999998764432 23333445678889999999888899999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         498 LIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       498 lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      +|||||||+|||+.++..+++.|++++++ |+|||++|||++++..+||++++|++|++++.|+++++
T Consensus       157 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~  224 (235)
T cd03261         157 LLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEEL  224 (235)
T ss_pred             EEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHH
Confidence            99999999999999999999999998874 89999999999999999999999999999999988765

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.1e-50  Score=375.67  Aligned_cols=218  Identities=23%  Similarity=0.349  Sum_probs=200.2

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCc-----cEEEEcCccCCC---
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS-----GNAYVMNHSIRD---  412 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~-----G~i~~~g~~~~~---  412 (566)
                      ..++++|+++.|+    .+.+|+|||++|++++++||+||+|||||||||++..+.....     |+|.++|+++..   
T Consensus         6 ~~~~~~~l~~yYg----~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~   81 (253)
T COG1117           6 PAIEVRDLNLYYG----DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKV   81 (253)
T ss_pred             ceeEecceeEEEC----chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCC
Confidence            3689999999997    6789999999999999999999999999999999999987654     999999999965   


Q ss_pred             chHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCC----CccccCcCcCChhHHHHHHH
Q psy7366         413 SMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALG----HYSDREVRTLSGGNKRKLST  488 (566)
Q Consensus       413 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqrv~l  488 (566)
                      ..-.+|+++|+|||.|+.|| +|++||+.++.++++...+..++.++..|+...|.    +.+++.+..||||||||++|
T Consensus        82 d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcI  160 (253)
T COG1117          82 DVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCI  160 (253)
T ss_pred             CHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHH
Confidence            35678999999999999998 89999999999988877666778888889888773    46788899999999999999


Q ss_pred             HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         489 AIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       489 a~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      ||||+.+|+|||||||||+|||.+...|.++|.++++ ..|||+|||+|.-+.+++|+..+|..|++++.|+.+++
T Consensus       161 ARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~-~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~i  235 (253)
T COG1117         161 ARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK-KYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKI  235 (253)
T ss_pred             HHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh-ccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhh
Confidence            9999999999999999999999999999999999974 69999999999999999999999999999999998765

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=100.00  E-value=7.8e-50  Score=416.35  Aligned_cols=219  Identities=23%  Similarity=0.374  Sum_probs=201.4

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCc--cEEEEcCccCCCchHHhcC
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS--GNAYVMNHSIRDSMDLVRS  419 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~--G~i~~~g~~~~~~~~~~~~  419 (566)
                      .|+++|+++.|+    ++.+|+|+||+|.+||+++|+|||||||||||++|+|+++|++  |+|.++|+++..... .++
T Consensus         5 ~l~~~~l~~~~~----~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~-~~r   79 (362)
T TIGR03258         5 GIRIDHLRVAYG----ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP-HKR   79 (362)
T ss_pred             EEEEEEEEEEEC----CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH-HHC
Confidence            489999999997    4579999999999999999999999999999999999999999  999999998864322 346


Q ss_pred             ceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEE
Q psy7366         420 YIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLI  499 (566)
Q Consensus       420 ~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~ll  499 (566)
                      .+||+||++.+|+.+||+||+.|+....+.+.....+++.++++.++|.+..++++.+|||||||||+|||||+.+|++|
T Consensus        80 ~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~ll  159 (362)
T TIGR03258        80 GLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVL  159 (362)
T ss_pred             CEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            79999999999999999999999876555555566678899999999999999999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhC--CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         500 FLDEPTSGMDPGARRFLWTCIERAVSE--GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       500 lLDEPt~gLD~~~~~~l~~~l~~~~~~--g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      ||||||+|||+..+..+++.|+++.++  |.|+|+||||++++..+|||+++|++|+++..|+++++.
T Consensus       160 LLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~  227 (362)
T TIGR03258       160 LLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALY  227 (362)
T ss_pred             EEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            999999999999999999999999876  799999999999999999999999999999999988763

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=1.7e-50  Score=384.08  Aligned_cols=221  Identities=31%  Similarity=0.436  Sum_probs=202.4

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc--hHHhc
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS--MDLVR  418 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~--~~~~~  418 (566)
                      .++++++++|+|+    +..+++||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|++++..  ....+
T Consensus         3 ~lL~v~~l~k~FG----Gl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar   78 (250)
T COG0411           3 PLLEVRGLSKRFG----GLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIAR   78 (250)
T ss_pred             ceeeeccceeecC----CEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHh
Confidence            3688999999997    78899999999999999999999999999999999999999999999999999763  34567


Q ss_pred             CceEEEecCCCCCCCCCHHHHHHHHHHhc-------C-----CCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHH
Q psy7366         419 SYIGYCPQFDALNDRLTPREHLEFYSRVR-------N-----VPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKL  486 (566)
Q Consensus       419 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~-------~-----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv  486 (566)
                      ..|+.-||.+.+|++|||.||+......+       .     ....+..+++.++|+++||.+..+++.++||+|||+|+
T Consensus        79 ~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~L  158 (250)
T COG0411          79 LGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRL  158 (250)
T ss_pred             ccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHH
Confidence            88999999999999999999998753311       1     12345667899999999999999999999999999999


Q ss_pred             HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         487 STAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       487 ~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      .|||||+.+|++||||||.+||.+....++.++|+++.++ |.||++|-|||+.+..+||||+||+.|+++++|+|++++
T Consensus       159 EIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~  238 (250)
T COG0411         159 EIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVR  238 (250)
T ss_pred             HHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHHh
Confidence            9999999999999999999999999999999999999885 799999999999999999999999999999999999875

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=100.00  E-value=1.8e-48  Score=459.45  Aligned_cols=373  Identities=20%  Similarity=0.286  Sum_probs=271.0

Q ss_pred             CCCCHHHHHHHHHHhcCCC--h----hhHHHHHHHHHHHcCCCcc-cccccccCChhHHHHHHHHHHHhCCC--CEEEee
Q psy7366          45 DRLTPREHLEFYSRVRNVP--S----VLLNTIVNESLNKFALGHY-SDREVRTLSGGNKRKLSTAIALLGNP--PLIFLD  115 (566)
Q Consensus        45 ~~~tv~e~l~~~~~~~~~~--~----~~~~~~~~~~l~~~gl~~~-~~~~~~~LSgG~kqrl~iA~al~~~p--~vLlLD  115 (566)
                      ..|++.|-+.|........  .    .++..|++ .|..+||++. +++.+.+|||||+|||+||+||+.+|  ++||||
T Consensus       425 ~~m~i~~l~~~~~~l~~~~~~~~~il~ei~~RL~-~L~~vGL~~L~ldR~~~tLSGGE~QRV~LAraL~~~p~g~lLILD  503 (1809)
T PRK00635        425 QQMSLQELFIFLSQLPSKSLSIEEVLQGLKSRLS-ILIDLGLPYLTPERALATLSGGEQERTALAKHLGAELIGITYILD  503 (1809)
T ss_pred             hcCCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH-HHHhccccCCCCCCchhhCCHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence            3577888777765442100  0    12223333 3457899876 79999999999999999999999999  899999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHHhhcCEEEEEe------CCEEEEecChhHHHhhccCccccCC
Q psy7366         116 EPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMV------NGQFTCLGSATHLKSKSMALPVSGN  189 (566)
Q Consensus       116 EPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~~~d~i~vl~------~G~i~~~g~~~~~~~~~~~~~~~~~  189 (566)
                      |||++||+.+++.|.++|++++++|.|||+||||++ +.++||||++|.      +|++++.|+++++.....       
T Consensus       504 EPTagLD~~~~~~L~~lL~~L~~~G~TVIvVeHd~~-vi~~aDrVi~L~pGag~~gG~Iv~~G~~~eil~~~~-------  575 (1809)
T PRK00635        504 EPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHDEQ-MISLADRIIDIGPGAGIFGGEVLFNGSPREFLAKSD-------  575 (1809)
T ss_pred             CCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHhCCEEEEEcCCcccCCCEEEEecCHHHHhhChH-------
Confidence            999999999999999999999888999999999998 568899999996      789999998877632100       


Q ss_pred             CCCCCCccchhHHHhhccCCCCccccCCCcccccccccccCCccchhhhhhhHHHHHHHHHHHHhhhhheeeccCCeeee
Q psy7366         190 DLGRGDPVRSELSRALNDGSGSGIRNSARPEVSGFYNENIDGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNGTRLV  269 (566)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (566)
                                .+...+...                                                             
T Consensus       576 ----------~l~~~~l~~-------------------------------------------------------------  584 (1809)
T PRK00635        576 ----------SLTAKYLRQ-------------------------------------------------------------  584 (1809)
T ss_pred             ----------HHHHHHhcC-------------------------------------------------------------
Confidence                      000000000                                                             


Q ss_pred             eeccchhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCcchhHHHHHHhhhcCCCCCCeEEEeeeE
Q psy7366         270 AVNIWAWRIIGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNLHPVPVSLEEDDVRKERERVEHGADSGDVLVVKRLF  349 (566)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~  349 (566)
                                                                 . ....   .+.    .+.      .....+++++++
T Consensus       585 -------------------------------------------~-~~~~---~~~----~~~------~~~~~L~l~~~~  607 (1809)
T PRK00635        585 -------------------------------------------E-LTIP---IPE----KRT------NSLGTLTLSKAT  607 (1809)
T ss_pred             -------------------------------------------c-cccc---Ccc----ccc------CCCCeEEEeccc
Confidence                                                       0 0000   000    000      011257788875


Q ss_pred             EEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHH---------HHHCCCCCCcc----E----EEEcCccCCC
Q psy7366         350 KIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFK---------MLTGAIKPTSG----N----AYVMNHSIRD  412 (566)
Q Consensus       350 ~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~---------~i~G~~~~~~G----~----i~~~g~~~~~  412 (566)
                      .         ..|+++||+|++||+++|+|+||||||||++         .|.|...+..+    .    |.++-.++..
T Consensus       608 ~---------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~idQspigr  678 (1809)
T PRK00635        608 K---------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHITRDLPGR  678 (1809)
T ss_pred             c---------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEecCCCCCC
Confidence            2         2699999999999999999999999999999         66665433111    1    2333332211


Q ss_pred             c-----h------HHhc---------C-----ceEEEecC---------------------C-----------------C
Q psy7366         413 S-----M------DLVR---------S-----YIGYCPQF---------------------D-----------------A  429 (566)
Q Consensus       413 ~-----~------~~~~---------~-----~i~~v~q~---------------------~-----------------~  429 (566)
                      .     .      ..+|         +     ...|.|+.                     .                 .
T Consensus       679 ~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~~e~L~~  758 (1809)
T PRK00635        679 SQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFLPQVLEV  758 (1809)
T ss_pred             CCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccCHHHHhh
Confidence            0     0      0111         0     01112221                     0                 1


Q ss_pred             CCCCCCHHHHHHHHHHh---cCCCchHHHHHHHHHHHHcCCCCc-cccCcCcCChhHHHHHHHHHHHc---CCCCEEEEe
Q psy7366         430 LNDRLTPREHLEFYSRV---RNVPSVLLNTIVNESLNKFALGHY-SDREVRTLSGGNKRKLSTAIALL---GNPPLIFLD  502 (566)
Q Consensus       430 l~~~~tv~e~l~~~~~~---~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgGqkqrv~la~al~---~~p~lllLD  502 (566)
                      .|...||.|++.+....   .........+++ ++++.+++... +++++.+|||||+||++||++|+   .+|++||||
T Consensus       759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILD  837 (1809)
T PRK00635        759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLD  837 (1809)
T ss_pred             ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEe
Confidence            45678999999875431   122233444555 58899999876 79999999999999999999997   699999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEE------CCEEEEecCccccc
Q psy7366         503 EPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMV------NGQFTCLGSATHLK  565 (566)
Q Consensus       503 EPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~------~G~i~~~g~~~~l~  565 (566)
                      |||+|||+.+++.++++|++++++|.|||++||+++++ .+||++++|.      +|++++.|+++++.
T Consensus       838 EPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~  905 (1809)
T PRK00635        838 EPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVV-KVADYVLELGPEGGNLGGYLLASCSPEELI  905 (1809)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHH
Confidence            99999999999999999999988899999999999999 7899999996      78999999988763

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=100.00  E-value=1.5e-49  Score=406.88  Aligned_cols=218  Identities=31%  Similarity=0.537  Sum_probs=200.6

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCce
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYI  421 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i  421 (566)
                      .++++|+++.|+    ++.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.......++++
T Consensus         2 ~l~~~~l~~~~~----~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~i   77 (301)
T TIGR03522         2 SIRVSSLTKLYG----TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNI   77 (301)
T ss_pred             EEEEEEEEEEEC----CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhce
Confidence            378999999996    4679999999999999999999999999999999999999999999999998865445567789


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEE
Q psy7366         422 GYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFL  501 (566)
Q Consensus       422 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllL  501 (566)
                      ||+||++.+++.+|+.||+.+....++.+.....+++.++++.+++.+..++++..|||||||||+||+||+.+|++|||
T Consensus        78 g~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliL  157 (301)
T TIGR03522        78 GYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLIL  157 (301)
T ss_pred             EEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            99999999999999999999877666555444556788999999999889999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         502 DEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       502 DEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      ||||+|||+.+++.+++.|+++++ ++|||++||+++++.++|||+++|++|++++.|+++++
T Consensus       158 DEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~  219 (301)
T TIGR03522       158 DEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDEL  219 (301)
T ss_pred             cCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            999999999999999999999865 79999999999999999999999999999999998876

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=100.00  E-value=1.1e-49  Score=408.33  Aligned_cols=208  Identities=41%  Similarity=0.694  Sum_probs=191.1

Q ss_pred             CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHH
Q psy7366         358 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPR  437 (566)
Q Consensus       358 ~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~  437 (566)
                      ++.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++.......++++||+||++.+++.+|+.
T Consensus         5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~   84 (302)
T TIGR01188         5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGR   84 (302)
T ss_pred             CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHH
Confidence            56799999999999999999999999999999999999999999999999988654445577899999999999999999


Q ss_pred             HHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHH
Q psy7366         438 EHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW  517 (566)
Q Consensus       438 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~  517 (566)
                      ||+.+....++.+.....+++.++++.+++.+..++++.+|||||||||+||+||+.+|++|||||||+|||+.++..++
T Consensus        85 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~  164 (302)
T TIGR01188        85 ENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIW  164 (302)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHH
Confidence            99988766555554445567889999999998899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         518 TCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       518 ~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      ++|++++++|.|||++||+++++..+||++++|++|++++.|++++++
T Consensus       165 ~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~  212 (302)
T TIGR01188       165 DYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELK  212 (302)
T ss_pred             HHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            999999877999999999999999999999999999999999987763

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.5e-49  Score=411.60  Aligned_cols=223  Identities=26%  Similarity=0.437  Sum_probs=199.6

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc-h---HHh
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS-M---DLV  417 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~---~~~  417 (566)
                      +|+++|++++|+...+.+.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++... .   ...
T Consensus         1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~   80 (343)
T PRK11153          1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA   80 (343)
T ss_pred             CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHH
Confidence            478999999996211135799999999999999999999999999999999999999999999999988642 1   234


Q ss_pred             cCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCC
Q psy7366         418 RSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPP  497 (566)
Q Consensus       418 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~  497 (566)
                      ++++||+||++.+++.+|+.||+.+.....+.+.....+++.++++.+++.+..++++.+|||||||||+|||||+.+|+
T Consensus        81 ~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~  160 (343)
T PRK11153         81 RRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPK  160 (343)
T ss_pred             hcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCC
Confidence            67899999999999999999999987655555444555678899999999988999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         498 LIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       498 lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      +|||||||+|||+.++..++++|+++.++ |+|||++|||++++..+||++++|++|++++.|+++++
T Consensus       161 iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~  228 (343)
T PRK11153        161 VLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEV  228 (343)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence            99999999999999999999999999765 89999999999999999999999999999999988765

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=100.00  E-value=2.7e-49  Score=413.74  Aligned_cols=219  Identities=23%  Similarity=0.403  Sum_probs=201.0

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCc
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSY  420 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~  420 (566)
                      .+|+++|+++.|+    ++.+|+++||+|++||+++|+|||||||||||++|+|+++|++|+|.++|+++..... .++.
T Consensus        13 ~~L~l~~l~~~~~----~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~-~~r~   87 (375)
T PRK09452         13 PLVELRGISKSFD----GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPA-ENRH   87 (375)
T ss_pred             ceEEEEEEEEEEC----CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH-HHCC
Confidence            4699999999996    4679999999999999999999999999999999999999999999999998865322 2467


Q ss_pred             eEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEE
Q psy7366         421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIF  500 (566)
Q Consensus       421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lll  500 (566)
                      +||+||++.+|+.+||.||+.|.....+.+.....+++.++++.++|.++.++++.+|||||||||+|||||+.+|++||
T Consensus        88 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llL  167 (375)
T PRK09452         88 VNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLL  167 (375)
T ss_pred             EEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            99999999999999999999987665555555556678999999999999999999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         501 LDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       501 LDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      |||||++||+.++..+++.|+++.++ |.|+|+||||.+++..+|||+++|++|+++..|+++++
T Consensus       168 LDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i  232 (375)
T PRK09452        168 LDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREI  232 (375)
T ss_pred             EeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence            99999999999999999999999875 99999999999999999999999999999999998876

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=100.00  E-value=1.9e-48  Score=442.45  Aligned_cols=367  Identities=23%  Similarity=0.337  Sum_probs=265.2

Q ss_pred             CCCCHHHHHHHHHHhcCCCh----------hhHHHHHHHHHHHcCCCcc-cccccccCChhHHHHHHHHHHHhCCC--CE
Q psy7366          45 DRLTPREHLEFYSRVRNVPS----------VLLNTIVNESLNKFALGHY-SDREVRTLSGGNKRKLSTAIALLGNP--PL  111 (566)
Q Consensus        45 ~~~tv~e~l~~~~~~~~~~~----------~~~~~~~~~~l~~~gl~~~-~~~~~~~LSgG~kqrl~iA~al~~~p--~v  111 (566)
                      -.|||.|.+.|..... .+.          .++.+++ +.+..+||+.. +++++.+|||||+|||.||++|+.+|  ++
T Consensus       433 ~~~~v~~~~~~~~~l~-~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~l  510 (924)
T TIGR00630       433 SELSIREAHEFFNQLD-LTPEEKKIAEEILKEIKERL-GFLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVL  510 (924)
T ss_pred             hcCCHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHH-HhHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcE
Confidence            3578989888876532 111          1233344 34778899865 79999999999999999999999986  89


Q ss_pred             EEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHHhhcCEEEEE------eCCEEEEecChhHHHhhccCcc
Q psy7366         112 IFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIM------VNGQFTCLGSATHLKSKSMALP  185 (566)
Q Consensus       112 LlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~~~d~i~vl------~~G~i~~~g~~~~~~~~~~~~~  185 (566)
                      |||||||+|||+.++++|.++|++++++|.|||+|+||++++. .||||++|      ++|+|++.|+++++........
T Consensus       511 lILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~-~aD~vi~LgpgaG~~~G~Iv~~g~~~el~~~~~~lt  589 (924)
T TIGR00630       511 YVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIR-AADYVIDIGPGAGIHGGEVVASGTPEEILANPDSLT  589 (924)
T ss_pred             EEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHh-hCCEEEEecccccCCCCEEeeccCHHHHhcCchhee
Confidence            9999999999999999999999999888999999999999986 89999999      9999999999887632110000


Q ss_pred             ccCCCCCCCCccchhHHHhhccCCCCccccCCCcccccccccccCCccchhhhhhhHHHHHHHHHHHHhhhhheeeccCC
Q psy7366         186 VSGNDLGRGDPVRSELSRALNDGSGSGIRNSARPEVSGFYNENIDGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNG  265 (566)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (566)
                        .              ..+...     .                                                   
T Consensus       590 --~--------------~~l~~~-----~---------------------------------------------------  597 (924)
T TIGR00630       590 --G--------------QYLSGK-----K---------------------------------------------------  597 (924)
T ss_pred             --e--------------eccccc-----c---------------------------------------------------
Confidence              0              000000     0                                                   


Q ss_pred             eeeeeeccchhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCcchhHHHHHHhhhcCCCCCCeEEE
Q psy7366         266 TRLVAVNIWAWRIIGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNLHPVPVSLEEDDVRKERERVEHGADSGDVLVV  345 (566)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  345 (566)
                                                                        ...   .+.    .. .    ......+++
T Consensus       598 --------------------------------------------------~~~---~~~----~~-~----~~~~~~l~l  615 (924)
T TIGR00630       598 --------------------------------------------------KIE---VPK----ER-R----PGNGKFLTL  615 (924)
T ss_pred             --------------------------------------------------ccc---ccc----cc-c----CCCcceEEE
Confidence                                                              000   000    00 0    001125888


Q ss_pred             eeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHH-HHH--------C-CCCC-----------CccEEE
Q psy7366         346 KRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFK-MLT--------G-AIKP-----------TSGNAY  404 (566)
Q Consensus       346 ~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~-~i~--------G-~~~~-----------~~G~i~  404 (566)
                      +|++.         ..|+|+||+|++|++++|+|+||||||||++ +|.        + ..+|           -.--|.
T Consensus       616 ~~~~~---------~~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  686 (924)
T TIGR00630       616 KGARE---------NNLKNITVSIPLGLFTCITGVSGSGKSTLINDTLYPALARRLNGAKTQPGRYKSIEGLEHLDKVIH  686 (924)
T ss_pred             EeCcc---------CCcCceEEEEeCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhcccccCCCCcCccccccCCCceEE
Confidence            88852         2599999999999999999999999999997 331        1 1111           011255


Q ss_pred             EcCccCCCch-----------HHhcCc-------------------------------eEEEecCCCC------------
Q psy7366         405 VMNHSIRDSM-----------DLVRSY-------------------------------IGYCPQFDAL------------  430 (566)
Q Consensus       405 ~~g~~~~~~~-----------~~~~~~-------------------------------i~~v~q~~~l------------  430 (566)
                      ++-.++..+.           ..+|..                               .|++.-+..+            
T Consensus       687 vdQ~pi~~~~RS~~aTy~~~~d~iR~lfa~~~~a~~~g~~~~~FSfN~~~G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~  766 (924)
T TIGR00630       687 IDQSPIGRTPRSNPATYTGVFDEIRELFAETPEAKARGYTPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCEVCK  766 (924)
T ss_pred             EecCCCCCCCCCchhhhhhhHHHHHHHHhcCCccccCCCChhhcCCCCCCCCCCCCccceEEEEEccCCCCcccCCCCcC
Confidence            5554442110           111111                               1122111000            


Q ss_pred             ------------C--------CCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCC-ccccCcCcCChhHHHHHHHH
Q psy7366         431 ------------N--------DRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGH-YSDREVRTLSGGNKRKLSTA  489 (566)
Q Consensus       431 ------------~--------~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqrv~la  489 (566)
                                  +        .++||.|.+.|+......      ....++++.+||.. .+++++.+|||||+||+.||
T Consensus       767 G~R~~~e~l~v~~~g~~i~dvl~~tv~e~~~f~~~~~~i------~~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA  840 (924)
T TIGR00630       767 GKRYNRETLEVKYKGKNIADVLDMTVEEAYEFFEAVPSI------SRKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLA  840 (924)
T ss_pred             CceeChHHHhceeCCCCHHHHhCCcHHHHHHHHHhccch------hHHHHHHHHcCCCchhhcCccccCCHHHHHHHHHH
Confidence                        1        135566665555432211      13457889999975 47999999999999999999


Q ss_pred             HHHcC---CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEE------ECCEEEEecC
Q psy7366         490 IALLG---NPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIM------VNGQFTCLGS  560 (566)
Q Consensus       490 ~al~~---~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l------~~G~i~~~g~  560 (566)
                      ++|+.   +|+++||||||+|||+..+..+++.|+++.++|.|||++||+++++. .||++++|      ++|++++.|+
T Consensus       841 ~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~-~aD~ii~Lgp~~G~~gG~iv~~G~  919 (924)
T TIGR00630       841 KELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIK-TADYIIDLGPEGGDGGGTIVASGT  919 (924)
T ss_pred             HHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEEEecCCccCCCCEEEEeCC
Confidence            99997   59999999999999999999999999999888999999999999985 69999999      7999999999


Q ss_pred             cccc
Q psy7366         561 ATHL  564 (566)
Q Consensus       561 ~~~l  564 (566)
                      ++++
T Consensus       920 ~~~l  923 (924)
T TIGR00630       920 PEEV  923 (924)
T ss_pred             HHHh
Confidence            8875

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=100.00  E-value=2e-49  Score=386.51  Aligned_cols=212  Identities=32%  Similarity=0.467  Sum_probs=189.4

Q ss_pred             EEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceE
Q psy7366         343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIG  422 (566)
Q Consensus       343 l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~  422 (566)
                      ++++|+++.|+    ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ..++.++
T Consensus         1 l~~~~l~~~~~----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~-~~~~~i~   75 (213)
T cd03259           1 LELKGLSKTYG----SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP-PERRNIG   75 (213)
T ss_pred             CeeeeeEEEeC----CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc-hhhccEE
Confidence            46889999996    467999999999999999999999999999999999999999999999999875422 2356799


Q ss_pred             EEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEe
Q psy7366         423 YCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLD  502 (566)
Q Consensus       423 ~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLD  502 (566)
                      |+||++.+++.+|+.||+.+.....+.......+.+.++++.+++.+..++++.+||||||||++|||||+.+|++||||
T Consensus        76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllD  155 (213)
T cd03259          76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLD  155 (213)
T ss_pred             EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            99999989989999999987654333333344566889999999998889999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEec
Q psy7366         503 EPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLG  559 (566)
Q Consensus       503 EPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g  559 (566)
                      |||+|||+.++..++++|++++++ |.|||++|||++++..+||++++|++|++++.|
T Consensus       156 EPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g  213 (213)
T cd03259         156 EPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG  213 (213)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence            999999999999999999998764 899999999999999999999999999998765

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=100.00  E-value=3.1e-49  Score=386.63  Aligned_cols=218  Identities=34%  Similarity=0.581  Sum_probs=194.2

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCce
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYI  421 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i  421 (566)
                      +++++|+++.|+......++|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++......+++.+
T Consensus         1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i   80 (218)
T cd03266           1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRL   80 (218)
T ss_pred             CeEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhE
Confidence            37899999999731111269999999999999999999999999999999999999999999999998865444556789


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEE
Q psy7366         422 GYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFL  501 (566)
Q Consensus       422 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllL  501 (566)
                      +|+||++.+++.+|+.||+.+....++.......+.+.++++.+++.+..++++.+||||||||++|||||+.+|++|||
T Consensus        81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illl  160 (218)
T cd03266          81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLL  160 (218)
T ss_pred             EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence            99999999999999999998765544444444556788999999999888999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEec
Q psy7366         502 DEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLG  559 (566)
Q Consensus       502 DEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g  559 (566)
                      ||||+|||+.+++.+.++|++++++|.|||++|||++++..+||++++|++|++++.|
T Consensus       161 DEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~  218 (218)
T cd03266         161 DEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG  218 (218)
T ss_pred             cCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence            9999999999999999999999777999999999999999999999999999998754

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=100.00  E-value=3.1e-49  Score=411.22  Aligned_cols=218  Identities=24%  Similarity=0.392  Sum_probs=198.1

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCce
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYI  421 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i  421 (566)
                      +|+++|+++.|+    ++.+|+|+||+|.+||+++|+||||||||||||+|+|+++|++|+|+++|+++.... ..++++
T Consensus         2 ~L~i~~l~~~~~----~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~-~~~r~i   76 (353)
T PRK10851          2 SIEIANIKKSFG----RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLH-ARDRKV   76 (353)
T ss_pred             EEEEEEEEEEeC----CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCC-HHHCCE
Confidence            488999999996    467999999999999999999999999999999999999999999999999886422 234679


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHHhc----CCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCC
Q psy7366         422 GYCPQFDALNDRLTPREHLEFYSRVR----NVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPP  497 (566)
Q Consensus       422 ~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~  497 (566)
                      +|+||++.+|+.+||.||+.+.....    ..+..+..+++.++++.++|.+..++++.+|||||||||+|||||+.+|+
T Consensus        77 ~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~  156 (353)
T PRK10851         77 GFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQ  156 (353)
T ss_pred             EEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence            99999999999999999999875432    22334456678999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         498 LIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       498 lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      +|||||||+|||+.++..+.+.|+++.++ |.|+|++|||++++..+|||+++|++|++++.|+++++
T Consensus       157 llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i  224 (353)
T PRK10851        157 ILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQV  224 (353)
T ss_pred             EEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence            99999999999999999999999999876 89999999999999999999999999999999998876

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=100.00  E-value=2.7e-49  Score=386.50  Aligned_cols=212  Identities=27%  Similarity=0.449  Sum_probs=188.5

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc----hHHh
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS----MDLV  417 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~----~~~~  417 (566)
                      +++++|+++.|+.  +.+.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...    ....
T Consensus         1 ~l~~~~l~~~~~~--~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~   78 (216)
T TIGR00960         1 MIRFEQVSKAYPG--GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFL   78 (216)
T ss_pred             CeEEEEEEEEecC--CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHH
Confidence            4789999999962  124699999999999999999999999999999999999999999999999987431    1234


Q ss_pred             cCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCC
Q psy7366         418 RSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPP  497 (566)
Q Consensus       418 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~  497 (566)
                      ++.++|+||++.+++.+|+.||+.+.....+.......+++.++++.+++.+..++++.+|||||||||+|||||+.+|+
T Consensus        79 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~  158 (216)
T TIGR00960        79 RRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPP  158 (216)
T ss_pred             HHhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence            67899999999999999999999886554443333445678899999999988899999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEE
Q psy7366         498 LIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQF  555 (566)
Q Consensus       498 lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i  555 (566)
                      +|||||||+|||+.+++.+.++|++++++|.|||++|||++++..+||++++|++|++
T Consensus       159 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i  216 (216)
T TIGR00960       159 LLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL  216 (216)
T ss_pred             EEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence            9999999999999999999999999977799999999999999999999999999974

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.1e-49  Score=412.64  Aligned_cols=218  Identities=25%  Similarity=0.423  Sum_probs=198.7

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCce
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYI  421 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i  421 (566)
                      .|+++|+++.|+    ++.+|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|.++|+++..... .++.+
T Consensus         3 ~l~i~~l~~~~~----~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~-~~~~i   77 (369)
T PRK11000          3 SVTLRNVTKAYG----DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP-AERGV   77 (369)
T ss_pred             EEEEEEEEEEeC----CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH-hHCCE
Confidence            489999999996    4679999999999999999999999999999999999999999999999998864222 24579


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEE
Q psy7366         422 GYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFL  501 (566)
Q Consensus       422 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllL  501 (566)
                      +|+||++.+|+.+||.||+.+.....+.+.....+++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||
T Consensus        78 ~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLL  157 (369)
T PRK11000         78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLL  157 (369)
T ss_pred             EEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            99999999999999999999876554444445556789999999999889999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         502 DEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       502 DEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      ||||+|||+.+++.+++.|+++.++ |.|+|++|||++++..+||++++|++|+++..|+++++
T Consensus       158 DEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i  221 (369)
T PRK11000        158 DEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL  221 (369)
T ss_pred             eCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence            9999999999999999999998765 89999999999999999999999999999999998765

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.6e-49  Score=412.05  Aligned_cols=219  Identities=26%  Similarity=0.446  Sum_probs=201.0

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCc
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSY  420 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~  420 (566)
                      .+|+++|+++.|+    +..+|+++||+|++||+++|+|||||||||||++|+|+.+|++|+|+++|+++.... ..++.
T Consensus        18 ~~l~l~~v~~~~~----~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~-~~~r~   92 (377)
T PRK11607         18 PLLEIRNLTKSFD----GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVP-PYQRP   92 (377)
T ss_pred             ceEEEEeEEEEEC----CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCC-HHHCC
Confidence            4699999999996    457999999999999999999999999999999999999999999999999886432 23568


Q ss_pred             eEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEE
Q psy7366         421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIF  500 (566)
Q Consensus       421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lll  500 (566)
                      +||+||++.+|+.+||.||+.+.....+.+..+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++||
T Consensus        93 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLL  172 (377)
T PRK11607         93 INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLL  172 (377)
T ss_pred             EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            99999999999999999999987665555555566788999999999999999999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         501 LDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       501 LDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      |||||++||+..+..+.+.|+++.++ |.|+|++|||.+++..+|||+++|++|+++..|+++++
T Consensus       173 LDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~  237 (377)
T PRK11607        173 LDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEI  237 (377)
T ss_pred             EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHH
Confidence            99999999999999999999998765 99999999999999999999999999999999998876

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=100.00  E-value=5.7e-49  Score=385.30  Aligned_cols=220  Identities=52%  Similarity=0.886  Sum_probs=196.5

Q ss_pred             EEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceE
Q psy7366         343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIG  422 (566)
Q Consensus       343 l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~  422 (566)
                      |+++|+++.|+..  .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.......+++++
T Consensus         1 l~~~~l~~~~~~~--~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~   78 (220)
T cd03263           1 LQIRNLTKTYKKG--TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLG   78 (220)
T ss_pred             CEEEeeEEEeCCC--CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEE
Confidence            4689999999621  16799999999999999999999999999999999999999999999999987654345567899


Q ss_pred             EEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEe
Q psy7366         423 YCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLD  502 (566)
Q Consensus       423 ~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLD  502 (566)
                      |++|++.+++.+|+.+|+.+.....+.+.....+.+.++++.+++.+..++++.+||+|||||++|||||+.+|++||||
T Consensus        79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD  158 (220)
T cd03263          79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLD  158 (220)
T ss_pred             EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEC
Confidence            99999999989999999988665544444344566889999999988889999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         503 EPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       503 EPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      |||+|||+.+++.+.+.|+++++ +.|||++|||++++..+||++++|++|++++.|++++++
T Consensus       159 EP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~  220 (220)
T cd03263         159 EPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQELK  220 (220)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHcC
Confidence            99999999999999999999876 599999999999999999999999999999999988764

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=100.00  E-value=6.8e-49  Score=389.60  Aligned_cols=218  Identities=26%  Similarity=0.422  Sum_probs=193.8

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCce
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYI  421 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i  421 (566)
                      +++++|+++.|+    ++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++..... .++++
T Consensus         2 ~l~~~~l~~~~~----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~-~~~~i   76 (239)
T cd03296           2 SIEVRNVSKRFG----DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV-QERNV   76 (239)
T ss_pred             EEEEEeEEEEEC----CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc-cccce
Confidence            478999999996    4679999999999999999999999999999999999999999999999988753221 24679


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHHhcCC----CchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCC
Q psy7366         422 GYCPQFDALNDRLTPREHLEFYSRVRNV----PSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPP  497 (566)
Q Consensus       422 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~  497 (566)
                      +|++|++.+++.+|+.||+.+.......    ......+.+.++++.+++.+..++++.+|||||||||+|||||+.+|+
T Consensus        77 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~  156 (239)
T cd03296          77 GFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPK  156 (239)
T ss_pred             EEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence            9999999999889999999876443222    222334567889999999888899999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         498 LIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       498 lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      +|||||||+|||+.+++.++++|++++++ |+|||++|||++++..+||++++|++|++++.|+++++
T Consensus       157 llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  224 (239)
T cd03296         157 VLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEV  224 (239)
T ss_pred             EEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHH
Confidence            99999999999999999999999999875 89999999999999999999999999999999988765

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=100.00  E-value=6.6e-49  Score=388.95  Aligned_cols=219  Identities=31%  Similarity=0.467  Sum_probs=194.3

Q ss_pred             EEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc-h-HHhcCc
Q psy7366         343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS-M-DLVRSY  420 (566)
Q Consensus       343 l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~-~~~~~~  420 (566)
                      ++++|+++.|+    ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... . ...+..
T Consensus         1 l~~~~l~~~~~----~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~   76 (236)
T cd03219           1 LEVRGLTKRFG----GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLG   76 (236)
T ss_pred             CeeeeeEEEEC----CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcC
Confidence            46889999996    45699999999999999999999999999999999999999999999999987542 2 223567


Q ss_pred             eEEEecCCCCCCCCCHHHHHHHHHHhcCC----------CchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHH
Q psy7366         421 IGYCPQFDALNDRLTPREHLEFYSRVRNV----------PSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAI  490 (566)
Q Consensus       421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~----------~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~  490 (566)
                      ++|+||++.+++.+|+.||+.+.......          ........+.++++.+++.+..++++.+|||||||||+|||
T Consensus        77 i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~  156 (236)
T cd03219          77 IGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIAR  156 (236)
T ss_pred             EEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHH
Confidence            99999999999999999999876543211          12234456889999999998889999999999999999999


Q ss_pred             HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         491 ALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       491 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      ||+.+|++|||||||+|||+.++..+++.|++++++|+|||++|||++++..+||++++|++|++++.|+++++.
T Consensus       157 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  231 (236)
T cd03219         157 ALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVR  231 (236)
T ss_pred             HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhc
Confidence            999999999999999999999999999999998877899999999999999999999999999999999887753

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=100.00  E-value=8.3e-49  Score=387.50  Aligned_cols=223  Identities=28%  Similarity=0.446  Sum_probs=196.4

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc-h---HHh
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS-M---DLV  417 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~---~~~  417 (566)
                      +|+++|+++.|+...+.+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... .   ...
T Consensus         1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~   80 (233)
T cd03258           1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKA   80 (233)
T ss_pred             CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHH
Confidence            478999999996310012799999999999999999999999999999999999999999999999987542 1   234


Q ss_pred             cCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCC
Q psy7366         418 RSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPP  497 (566)
Q Consensus       418 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~  497 (566)
                      ++.++|+||++.+++.+|+.||+.+.....+.........+.++++.+++.+..++++.+||||||||++|||||+.+|+
T Consensus        81 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~  160 (233)
T cd03258          81 RRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPK  160 (233)
T ss_pred             HhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence            67899999999999999999999876544443333445568899999999988899999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         498 LIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       498 lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      +|||||||+|||+.++..++++|++++++ |.|||++|||++++..+||++++|++|++++.|+++++
T Consensus       161 lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  228 (233)
T cd03258         161 VLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEV  228 (233)
T ss_pred             EEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence            99999999999999999999999998775 89999999999999999999999999999999988765

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=1.1e-49  Score=387.98  Aligned_cols=224  Identities=28%  Similarity=0.437  Sum_probs=206.4

Q ss_pred             eEEEeeeEEEeCCcC--------------------CCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCcc
Q psy7366         342 VLVVKRLFKIYANSK--------------------GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG  401 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~--------------------~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G  401 (566)
                      .++++|++|-|++..                    |...-++|+||+|+.|||+.|+|-+|||||||+++|.++++|++|
T Consensus         4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G   83 (386)
T COG4175           4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG   83 (386)
T ss_pred             eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence            478888888887521                    122357899999999999999999999999999999999999999


Q ss_pred             EEEEcCccCCC-c----hHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcC
Q psy7366         402 NAYVMNHSIRD-S----MDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVR  476 (566)
Q Consensus       402 ~i~~~g~~~~~-~----~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~  476 (566)
                      +|.++|+++.. +    ....++++++|||++.|+|..||.||+.|+....+.++.+.++++.++++.+||..+.+++|.
T Consensus        84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~  163 (386)
T COG4175          84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPN  163 (386)
T ss_pred             eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcc
Confidence            99999999854 2    223467899999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEE
Q psy7366         477 TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQF  555 (566)
Q Consensus       477 ~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i  555 (566)
                      +|||||||||.|||||+.+|+|||+|||||+|||--+.++.+.|.+++++ ++|||+||||++|+.++.|||.+|++|+|
T Consensus       164 eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~i  243 (386)
T COG4175         164 ELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEI  243 (386)
T ss_pred             cccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeE
Confidence            99999999999999999999999999999999999999999999999876 99999999999999999999999999999


Q ss_pred             EEecCccccc
Q psy7366         556 TCLGSATHLK  565 (566)
Q Consensus       556 ~~~g~~~~l~  565 (566)
                      +..|+|+++.
T Consensus       244 vQ~Gtp~eIl  253 (386)
T COG4175         244 VQVGTPEEIL  253 (386)
T ss_pred             EEeCCHHHHH
Confidence            9999999863

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=100.00  E-value=8.3e-49  Score=412.39  Aligned_cols=219  Identities=23%  Similarity=0.440  Sum_probs=198.9

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCc
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSY  420 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~  420 (566)
                      +|+++|+++.|+    ++.+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.. ....++++
T Consensus         3 ~L~~~nls~~y~----~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~   78 (402)
T PRK09536          3 MIDVSDLSVEFG----DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRR   78 (402)
T ss_pred             eEEEeeEEEEEC----CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcc
Confidence            689999999997    5679999999999999999999999999999999999999999999999998865 34556778


Q ss_pred             eEEEecCCCCCCCCCHHHHHHHHHHhc--CC--CchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCC
Q psy7366         421 IGYCPQFDALNDRLTPREHLEFYSRVR--NV--PSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNP  496 (566)
Q Consensus       421 i~~v~q~~~l~~~~tv~e~l~~~~~~~--~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p  496 (566)
                      +||++|++.+++.+|+.||+.+....+  ..  ......+++.++++.+++.+..++++.+|||||||||+|||||+++|
T Consensus        79 ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P  158 (402)
T PRK09536         79 VASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQAT  158 (402)
T ss_pred             eEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence            999999999988999999998753211  11  13344567899999999999999999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         497 PLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       497 ~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      ++|||||||+|||+.++..++++|++++++|.|||++|||++++.++|||+++|++|+++..|+++++
T Consensus       159 ~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev  226 (402)
T PRK09536        159 PVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADV  226 (402)
T ss_pred             CEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence            99999999999999999999999999987789999999999999999999999999999999998875

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=100.00  E-value=9.6e-49  Score=386.79  Aligned_cols=218  Identities=33%  Similarity=0.512  Sum_probs=194.5

Q ss_pred             EEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc-h-HHhcCc
Q psy7366         343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS-M-DLVRSY  420 (566)
Q Consensus       343 l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~-~~~~~~  420 (566)
                      ++++|+++.|+    ++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|+++... . ...++.
T Consensus         1 l~~~~l~~~~~----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~   76 (232)
T cd03218           1 LRAENLSKRYG----KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLG   76 (232)
T ss_pred             CeEEEEEEEeC----CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhcc
Confidence            46899999996    45799999999999999999999999999999999999999999999999987542 2 223467


Q ss_pred             eEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEE
Q psy7366         421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIF  500 (566)
Q Consensus       421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lll  500 (566)
                      ++|+||++.+++.+|+.||+.+.....+.........+.++++.+++.+..++++.+||||||||++|||||+.+|++||
T Consensus        77 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll  156 (232)
T cd03218          77 IGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLL  156 (232)
T ss_pred             EEEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            99999999999999999999876543333333345567899999999988899999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         501 LDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       501 LDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      |||||+|||+.+++.++++|+++.++|.|||++|||++++..+||++++|++|++++.|+.+++
T Consensus       157 lDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  220 (232)
T cd03218         157 LDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEI  220 (232)
T ss_pred             ecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHh
Confidence            9999999999999999999999987799999999999999999999999999999999987764

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=100.00  E-value=7e-49  Score=408.15  Aligned_cols=207  Identities=26%  Similarity=0.418  Sum_probs=191.2

Q ss_pred             CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHh----cCceEEEecCCCCCC
Q psy7366         358 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLV----RSYIGYCPQFDALND  432 (566)
Q Consensus       358 ~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~----~~~i~~v~q~~~l~~  432 (566)
                      ++.+|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|+++|+++.. ....+    ++.++|+||++.+|+
T Consensus         5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~   84 (363)
T TIGR01186         5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFP   84 (363)
T ss_pred             CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCC
Confidence            5679999999999999999999999999999999999999999999999999865 23333    678999999999999


Q ss_pred             CCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHH
Q psy7366         433 RLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGA  512 (566)
Q Consensus       433 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~  512 (566)
                      .+||+||+.+.....+.+..+..+++.++++.++|....++++.+|||||||||+|||||+.+|++|||||||++||+.+
T Consensus        85 ~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~  164 (363)
T TIGR01186        85 HMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLI  164 (363)
T ss_pred             CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence            99999999987766565555566788999999999989999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         513 RRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       513 ~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      +..+.+.+.++.++ |+|||++|||++++..+|||+++|++|+++..|+++++
T Consensus       165 r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei  217 (363)
T TIGR01186       165 RDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEI  217 (363)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHH
Confidence            99999999999765 89999999999999999999999999999999998875

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=100.00  E-value=1.4e-48  Score=382.57  Aligned_cols=216  Identities=27%  Similarity=0.420  Sum_probs=191.0

Q ss_pred             EEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceE
Q psy7366         343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIG  422 (566)
Q Consensus       343 l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~  422 (566)
                      ++++|+++.|+...+.+++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++..    .++.++
T Consensus         1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~----~~~~i~   76 (220)
T cd03293           1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG----PGPDRG   76 (220)
T ss_pred             CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc----ccCcEE
Confidence            4689999999621111579999999999999999999999999999999999999999999999988752    356799


Q ss_pred             EEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEe
Q psy7366         423 YCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLD  502 (566)
Q Consensus       423 ~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLD  502 (566)
                      |+||++.+++.+|+.||+.+.....+.+.....+.+.++++.+++.+..++++.+||||||||++|||||+.+|++||||
T Consensus        77 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLD  156 (220)
T cd03293          77 YVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLD  156 (220)
T ss_pred             EEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence            99999998888999999987655444443444567889999999988889999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEccCHHHHHhhCCEEEEEE--CCEEEEecCcc
Q psy7366         503 EPTSGMDPGARRFLWTCIERAVS-EGRCVILTSHNMEECEALCTKLTIMV--NGQFTCLGSAT  562 (566)
Q Consensus       503 EPt~gLD~~~~~~l~~~l~~~~~-~g~tvl~vsHd~~~~~~~~drv~~l~--~G~i~~~g~~~  562 (566)
                      |||+|||+.++..++++|+++.+ .|.|||++|||++++..+||++++|+  +|+++++++.+
T Consensus       157 EPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~  219 (220)
T cd03293         157 EPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEVD  219 (220)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEec
Confidence            99999999999999999999865 48999999999999999999999999  79999887653

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=100.00  E-value=1.9e-48  Score=378.89  Aligned_cols=210  Identities=34%  Similarity=0.587  Sum_probs=189.7

Q ss_pred             EEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceE
Q psy7366         343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIG  422 (566)
Q Consensus       343 l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~  422 (566)
                      ++++|+++.|+    ++.+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|+++..   ..++.++
T Consensus         1 l~~~~l~~~~~----~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~---~~~~~i~   73 (210)
T cd03269           1 LEVENVTKRFG----RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI---AARNRIG   73 (210)
T ss_pred             CEEEEEEEEEC----CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH---HHHccEE
Confidence            46899999996    4579999999999999999999999999999999999999999999999987643   3456899


Q ss_pred             EEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEe
Q psy7366         423 YCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLD  502 (566)
Q Consensus       423 ~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLD  502 (566)
                      |+||++.+++.+|+.||+.+....++.+.....+.+.++++.+++.+..++++.+||||||||++|||||+.+|++||||
T Consensus        74 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllD  153 (210)
T cd03269          74 YLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILD  153 (210)
T ss_pred             EeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            99999999999999999987655444444444567889999999988889999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEec
Q psy7366         503 EPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLG  559 (566)
Q Consensus       503 EPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g  559 (566)
                      |||+|||+.+++.+.+.|++++++|.|||++|||++++..+||++++|++|++++.|
T Consensus       154 EP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~  210 (210)
T cd03269         154 EPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG  210 (210)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence            999999999999999999998877899999999999999999999999999998754

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=100.00  E-value=1.7e-48  Score=380.03  Aligned_cols=212  Identities=26%  Similarity=0.460  Sum_probs=189.8

Q ss_pred             EEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceE
Q psy7366         343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIG  422 (566)
Q Consensus       343 l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~  422 (566)
                      ++++|+++.|+    ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... .+++++
T Consensus         1 i~~~~l~~~~~----~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~-~~~~i~   75 (213)
T cd03301           1 VELENVTKRFG----NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPP-KDRDIA   75 (213)
T ss_pred             CEEEeeEEEEC----CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc-ccceEE
Confidence            46899999996    4579999999999999999999999999999999999999999999999998754221 235799


Q ss_pred             EEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEe
Q psy7366         423 YCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLD  502 (566)
Q Consensus       423 ~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLD  502 (566)
                      |+||++.+++..|++||+.+.....+.......+.+.++++.+++.+..++++.+||||||||++|||||+.+|++||||
T Consensus        76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllD  155 (213)
T cd03301          76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMD  155 (213)
T ss_pred             EEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            99999988888999999988654444444444567888999999998889999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEec
Q psy7366         503 EPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLG  559 (566)
Q Consensus       503 EPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g  559 (566)
                      |||+|||+.++..++++|++++++ |.|||++|||++++..+||++++|++|++++.|
T Consensus       156 EPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g  213 (213)
T cd03301         156 EPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG  213 (213)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence            999999999999999999999764 899999999999999999999999999998865

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.6e-48  Score=395.18  Aligned_cols=223  Identities=28%  Similarity=0.465  Sum_probs=196.1

Q ss_pred             eEEEeeeEEEeCCcCC-CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc---hHHh
Q psy7366         342 VLVVKRLFKIYANSKG-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS---MDLV  417 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~-~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~---~~~~  417 (566)
                      .|+++|+++.|+...+ .+++|+|+||+|.+||++||+||||||||||+++|+|+++|++|+|.++|+++...   ....
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~   81 (287)
T PRK13637          2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI   81 (287)
T ss_pred             EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence            3889999999963111 24699999999999999999999999999999999999999999999999988542   2345


Q ss_pred             cCceEEEecCCC-CCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCC--CccccCcCcCChhHHHHHHHHHHHcC
Q psy7366         418 RSYIGYCPQFDA-LNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALG--HYSDREVRTLSGGNKRKLSTAIALLG  494 (566)
Q Consensus       418 ~~~i~~v~q~~~-l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgGqkqrv~la~al~~  494 (566)
                      ++++||+||++. .+...||.||+.+.....+.+..+..+++.++++.++|.  +..++++.+||||||||++|||||+.
T Consensus        82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~  161 (287)
T PRK13637         82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAM  161 (287)
T ss_pred             hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHc
Confidence            678999999973 333579999998865544555555566788999999997  67899999999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         495 NPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       495 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      +|++|||||||+|||+.++..++++|++++++ |.|||++|||++++..+|||+++|++|+++++|+++++
T Consensus       162 ~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~  232 (287)
T PRK13637        162 EPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREV  232 (287)
T ss_pred             CCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence            99999999999999999999999999999775 99999999999999999999999999999999988765

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.8e-48  Score=392.40  Aligned_cols=220  Identities=25%  Similarity=0.369  Sum_probs=195.5

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCc
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSY  420 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~  420 (566)
                      +++++|+++.|+.   .+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .....+++
T Consensus         4 ~l~~~~l~~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~   80 (274)
T PRK13647          4 IIEVEDLHFRYKD---GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSK   80 (274)
T ss_pred             eEEEEEEEEEeCC---CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhh
Confidence            6899999999952   3569999999999999999999999999999999999999999999999998854 23445678


Q ss_pred             eEEEecCCC-CCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEE
Q psy7366         421 IGYCPQFDA-LNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLI  499 (566)
Q Consensus       421 i~~v~q~~~-l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~ll  499 (566)
                      ++|+||++. .+...|+.||+.+.....+.......+++.++++.+++.+..++++.+|||||||||+|||||+.+|++|
T Consensus        81 i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~ll  160 (274)
T PRK13647         81 VGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVI  160 (274)
T ss_pred             EEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence            999999973 4456799999987654334444444567889999999998899999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         500 FLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       500 lLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      ||||||+|||+.++..++++|++++++|.|||++|||++++.++|||+++|++|++++.|+++++
T Consensus       161 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  225 (274)
T PRK13647        161 VLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL  225 (274)
T ss_pred             EEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence            99999999999999999999999987799999999999999999999999999999999987654

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=3.1e-48  Score=385.16  Aligned_cols=219  Identities=25%  Similarity=0.378  Sum_probs=195.5

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC---chHHhc
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD---SMDLVR  418 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~---~~~~~~  418 (566)
                      +++++|+++.|+    ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++..   .....+
T Consensus         1 ~l~~~~l~~~~~----~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~   76 (240)
T PRK09493          1 MIEFKNVSKHFG----PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIR   76 (240)
T ss_pred             CEEEEeEEEEEC----CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHh
Confidence            378999999996    4679999999999999999999999999999999999999999999999998753   123456


Q ss_pred             CceEEEecCCCCCCCCCHHHHHHHHHH-hcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCC
Q psy7366         419 SYIGYCPQFDALNDRLTPREHLEFYSR-VRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPP  497 (566)
Q Consensus       419 ~~i~~v~q~~~l~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~  497 (566)
                      ++++|+||++.+++.+|+.||+.+... ..+.......+.+.++++.+++.+..++++.+||||||||++|||||+.+|+
T Consensus        77 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~  156 (240)
T PRK09493         77 QEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPK  156 (240)
T ss_pred             hceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCC
Confidence            789999999999988999999977532 2233333445667899999999888899999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         498 LIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       498 lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      +|||||||+|||+.++..+.++|++++++|+|||++|||++++..+||++++|++|++++.|+++++
T Consensus       157 llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  223 (240)
T PRK09493        157 LMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVL  223 (240)
T ss_pred             EEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHH
Confidence            9999999999999999999999999987799999999999999999999999999999999987765

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=100.00  E-value=2.1e-48  Score=377.91  Aligned_cols=208  Identities=34%  Similarity=0.525  Sum_probs=188.1

Q ss_pred             EEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceE
Q psy7366         343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIG  422 (566)
Q Consensus       343 l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~  422 (566)
                      ++++|+++.|+    ++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++... ...++.++
T Consensus         1 l~~~~l~~~~~----~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~i~   75 (208)
T cd03268           1 LKTNDLTKTYG----KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN-IEALRRIG   75 (208)
T ss_pred             CEEEEEEEEEC----CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch-HHHHhhEE
Confidence            46899999996    46799999999999999999999999999999999999999999999999987543 34466799


Q ss_pred             EEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEe
Q psy7366         423 YCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLD  502 (566)
Q Consensus       423 ~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLD  502 (566)
                      |+||++.+++.+|+.||+.++......    ..+.+.++++.+++.+..++++.+|||||||||+|||||+.+|++||||
T Consensus        76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD  151 (208)
T cd03268          76 ALIEAPGFYPNLTARENLRLLARLLGI----RKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILD  151 (208)
T ss_pred             EecCCCccCccCcHHHHHHHHHHhcCC----cHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEEC
Confidence            999999999999999999886543322    1345788999999998889999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEec
Q psy7366         503 EPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLG  559 (566)
Q Consensus       503 EPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g  559 (566)
                      |||+|||+.+++.++++|++++++|.|||++|||++++..+||++++|++|++++.|
T Consensus       152 EPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g  208 (208)
T cd03268         152 EPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG  208 (208)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence            999999999999999999998877899999999999999999999999999998764

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=100.00  E-value=4e-48  Score=399.84  Aligned_cols=225  Identities=24%  Similarity=0.321  Sum_probs=198.4

Q ss_pred             CCeEEEeeeEEEeCCcC---------CCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccC
Q psy7366         340 GDVLVVKRLFKIYANSK---------GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI  410 (566)
Q Consensus       340 ~~~l~~~~l~~~y~~~~---------~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~  410 (566)
                      ..+|+++||++.|+.+.         +...+++|+||+|.+||++||+|+||||||||+++|+|+++|++|+|.++|+++
T Consensus         6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i   85 (331)
T PRK15079          6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDL   85 (331)
T ss_pred             CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEEC
Confidence            35799999999996321         125699999999999999999999999999999999999999999999999988


Q ss_pred             CCc----hHHhcCceEEEecCC--CCCCCCCHHHHHHHHHHhc--CCCchHHHHHHHHHHHHcCCC-CccccCcCcCChh
Q psy7366         411 RDS----MDLVRSYIGYCPQFD--ALNDRLTPREHLEFYSRVR--NVPSVLLNTIVNESLNKFALG-HYSDREVRTLSGG  481 (566)
Q Consensus       411 ~~~----~~~~~~~i~~v~q~~--~l~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG  481 (566)
                      ...    ...++++++||||++  .+++.+|+.+|+.+....+  .....+..+++.++++.+++. ...++++.+||||
T Consensus        86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG  165 (331)
T PRK15079         86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGG  165 (331)
T ss_pred             CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHH
Confidence            542    223567899999997  5888999999998765433  244455566788999999995 5689999999999


Q ss_pred             HHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecC
Q psy7366         482 NKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS  560 (566)
Q Consensus       482 qkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~  560 (566)
                      |+|||+|||||+.+|++||+||||+|||+.++..++++|+++.++ |.|+|+||||++++..+|||+++|++|++++.|+
T Consensus       166 ~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive~g~  245 (331)
T PRK15079        166 QCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGT  245 (331)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence            999999999999999999999999999999999999999999875 9999999999999999999999999999999998


Q ss_pred             cccc
Q psy7366         561 ATHL  564 (566)
Q Consensus       561 ~~~l  564 (566)
                      ++++
T Consensus       246 ~~~i  249 (331)
T PRK15079        246 YDEV  249 (331)
T ss_pred             HHHH
Confidence            8765

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=100.00  E-value=3.3e-48  Score=385.44  Aligned_cols=219  Identities=31%  Similarity=0.533  Sum_probs=195.0

Q ss_pred             EEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCce
Q psy7366         343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSYI  421 (566)
Q Consensus       343 l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~i  421 (566)
                      ++++|+++.|+.   .+.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++.. .....+..+
T Consensus         1 l~~~~l~~~~~~---~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i   77 (242)
T cd03295           1 IEFENVTKRYGG---GKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKI   77 (242)
T ss_pred             CEEEEEEEEeCC---cceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcce
Confidence            468999999962   1569999999999999999999999999999999999999999999999998754 233456789


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCC--ccccCcCcCChhHHHHHHHHHHHcCCCCEE
Q psy7366         422 GYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGH--YSDREVRTLSGGNKRKLSTAIALLGNPPLI  499 (566)
Q Consensus       422 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~LSgGqkqrv~la~al~~~p~ll  499 (566)
                      +|+||++.+++.+|+.||+.+.....+.......+.+.++++.+++..  ..++++.+|||||||||+|||||+.+|++|
T Consensus        78 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ll  157 (242)
T cd03295          78 GYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLL  157 (242)
T ss_pred             EEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            999999999999999999987654444333444567889999999986  789999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         500 FLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       500 lLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      ||||||+|||+.++..+.+.|++++++ |.|||++||+++++..+||++++|++|++++.|+++++
T Consensus       158 llDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  223 (242)
T cd03295         158 LMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEI  223 (242)
T ss_pred             EecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence            999999999999999999999999765 89999999999999999999999999999999887654

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=100.00  E-value=1.9e-48  Score=381.09  Aligned_cols=212  Identities=26%  Similarity=0.407  Sum_probs=185.5

Q ss_pred             EEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCch-----HHh
Q psy7366         343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM-----DLV  417 (566)
Q Consensus       343 l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~-----~~~  417 (566)
                      |+++|+++.|+...+.+.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++....     ...
T Consensus         1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~   80 (218)
T cd03255           1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR   80 (218)
T ss_pred             CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence            468999999963111157999999999999999999999999999999999999999999999999875421     123


Q ss_pred             cCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCC
Q psy7366         418 RSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPP  497 (566)
Q Consensus       418 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~  497 (566)
                      ++.++|+||++.+++.+|+.||+.+.....+.......+.+.++++.+++.+..++++.+|||||||||+|||||+.+|+
T Consensus        81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~  160 (218)
T cd03255          81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPK  160 (218)
T ss_pred             hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCC
Confidence            56799999999999999999999886554443333345578899999999988899999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEccCHHHHHhhCCEEEEEECCEE
Q psy7366         498 LIFLDEPTSGMDPGARRFLWTCIERAVS-EGRCVILTSHNMEECEALCTKLTIMVNGQF  555 (566)
Q Consensus       498 lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~tvl~vsHd~~~~~~~~drv~~l~~G~i  555 (566)
                      +|||||||+|||+.++..+.++|+++++ +|+|||++|||++++. +||++++|++|++
T Consensus       161 lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l~~G~i  218 (218)
T cd03255         161 IILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELRDGKI  218 (218)
T ss_pred             EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEeeCCcC
Confidence            9999999999999999999999999977 5899999999999987 9999999999974

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=100.00  E-value=3.4e-48  Score=383.81  Aligned_cols=218  Identities=31%  Similarity=0.489  Sum_probs=193.7

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCce
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYI  421 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i  421 (566)
                      +++++|+++.|+    ++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++.......++.+
T Consensus         1 ~l~~~~l~~~~~----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i   76 (236)
T TIGR03864         1 ALEVAGLSFAYG----ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARL   76 (236)
T ss_pred             CEEEEeeEEEEC----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhE
Confidence            478999999996    4679999999999999999999999999999999999999999999999988754322334579


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEE
Q psy7366         422 GYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFL  501 (566)
Q Consensus       422 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllL  501 (566)
                      +|+||++.+++.+|+.||+.+.....+.......+.+.++++.+++.+..++++.+||||||||++|||||+.+|++|||
T Consensus        77 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llll  156 (236)
T TIGR03864        77 GVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLL  156 (236)
T ss_pred             EEeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            99999998888899999998765444433334456688999999999888999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         502 DEPTSGMDPGARRFLWTCIERAVS-EGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       502 DEPt~gLD~~~~~~l~~~l~~~~~-~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      ||||+|||+.+++.+++.|+++++ +|.|||++|||++++.. ||++++|++|++++.|+++++
T Consensus       157 DEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~d~i~~l~~G~i~~~~~~~~~  219 (236)
T TIGR03864       157 DEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEA-DDRLVVLHRGRVLADGAAAEL  219 (236)
T ss_pred             cCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhh-CCEEEEEeCCeEEEeCCHHHH
Confidence            999999999999999999999875 58999999999999975 999999999999999987654

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=100.00  E-value=2.8e-48  Score=385.67  Aligned_cols=219  Identities=27%  Similarity=0.401  Sum_probs=192.7

Q ss_pred             EEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc----hHHhc
Q psy7366         343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS----MDLVR  418 (566)
Q Consensus       343 l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~----~~~~~  418 (566)
                      ++++|+++.|+.   ++.+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|+++...    ....+
T Consensus         1 l~~~~l~~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~   77 (241)
T cd03256           1 IEVENLSKTYPN---GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLR   77 (241)
T ss_pred             CEEeeEEEecCC---ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHH
Confidence            468999999962   25799999999999999999999999999999999999999999999999987542    23456


Q ss_pred             CceEEEecCCCCCCCCCHHHHHHHHHHh--------cCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHH
Q psy7366         419 SYIGYCPQFDALNDRLTPREHLEFYSRV--------RNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAI  490 (566)
Q Consensus       419 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~--------~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~  490 (566)
                      +.++|+||++.+++.+|+.||+.+....        .+.......+++.++++.+++.+..++++.+|||||||||+|||
T Consensus        78 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~  157 (241)
T cd03256          78 RQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIAR  157 (241)
T ss_pred             hccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHH
Confidence            7899999999999989999999764321        11122233456788999999988889999999999999999999


Q ss_pred             HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         491 ALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       491 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      ||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++|||++++..+||++++|++|++++.|+++++
T Consensus       158 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~  232 (241)
T cd03256         158 ALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAEL  232 (241)
T ss_pred             HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHh
Confidence            999999999999999999999999999999998764 89999999999999999999999999999999988765

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=100.00  E-value=3.2e-48  Score=381.80  Aligned_cols=216  Identities=25%  Similarity=0.393  Sum_probs=190.8

Q ss_pred             EEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCC-----CCCccEEEEcCccCCCc---h
Q psy7366         343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI-----KPTSGNAYVMNHSIRDS---M  414 (566)
Q Consensus       343 l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~-----~~~~G~i~~~g~~~~~~---~  414 (566)
                      |+++|+++.|+    ++++|+|+||+|++||+++|+||||||||||+++|+|++     +|++|+|.++|+++...   .
T Consensus         1 i~~~~l~~~~~----~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~   76 (227)
T cd03260           1 IELRDLNVYYG----DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDV   76 (227)
T ss_pred             CEEEEEEEEcC----CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHH
Confidence            46899999996    457999999999999999999999999999999999999     99999999999987532   3


Q ss_pred             HHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCc-hHHHHHHHHHHHHcCCCCccccC--cCcCChhHHHHHHHHHH
Q psy7366         415 DLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPS-VLLNTIVNESLNKFALGHYSDRE--VRTLSGGNKRKLSTAIA  491 (566)
Q Consensus       415 ~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgGqkqrv~la~a  491 (566)
                      ...+++++|+||++.++ .+|+.||+.+.....+... ....+++.++++.+++.+..+++  +.+||||||||++||||
T Consensus        77 ~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~a  155 (227)
T cd03260          77 LELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARA  155 (227)
T ss_pred             HHHHhhEEEEecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHH
Confidence            34567899999999888 7899999987654333222 22356678899999998776666  59999999999999999


Q ss_pred             HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         492 LLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       492 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      |+.+|++|||||||+|||+.++..++++|++++++ .|||++|||++++..+||++++|++|++++.|+++++
T Consensus       156 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  227 (227)
T cd03260         156 LANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI  227 (227)
T ss_pred             HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence            99999999999999999999999999999999877 9999999999999999999999999999999988764

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.8e-48  Score=393.33  Aligned_cols=222  Identities=25%  Similarity=0.416  Sum_probs=195.8

Q ss_pred             eEEEeeeEEEeCCcC-CCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-----chH
Q psy7366         342 VLVVKRLFKIYANSK-GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-----SMD  415 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~-~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-----~~~  415 (566)
                      +|+++|+++.|+... ..+.+|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|+++|.++..     ...
T Consensus         1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~   80 (288)
T PRK13643          1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK   80 (288)
T ss_pred             CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence            478999999996311 11359999999999999999999999999999999999999999999999998742     233


Q ss_pred             HhcCceEEEecCC--CCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCC-CccccCcCcCChhHHHHHHHHHHH
Q psy7366         416 LVRSYIGYCPQFD--ALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALG-HYSDREVRTLSGGNKRKLSTAIAL  492 (566)
Q Consensus       416 ~~~~~i~~v~q~~--~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqrv~la~al  492 (566)
                      ..++.+||+||++  .+++ .|+.||+.|.....+.+..+...++.++++.+++. ...++++.+||||||||++|||+|
T Consensus        81 ~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL  159 (288)
T PRK13643         81 PVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGIL  159 (288)
T ss_pred             HHHhhEEEEecCcchhccc-chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHH
Confidence            4677899999987  4555 59999998876544555555566788999999996 577999999999999999999999


Q ss_pred             cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         493 LGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       493 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      +.+|++|||||||+|||+.++..+.++|++++++|.|||++|||++++..+|||+++|++|+++++|+++++
T Consensus       160 ~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~  231 (288)
T PRK13643        160 AMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDV  231 (288)
T ss_pred             HhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence            999999999999999999999999999999987799999999999999999999999999999999998775

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=100.00  E-value=3.4e-48  Score=377.32  Aligned_cols=211  Identities=33%  Similarity=0.599  Sum_probs=189.3

Q ss_pred             EEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceE
Q psy7366         343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIG  422 (566)
Q Consensus       343 l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~  422 (566)
                      ++++|+++.|+    ++++|+|+||+|++| +++|+||||||||||+++|+|+++|++|+|.++|+++.......+++++
T Consensus         1 i~~~~~~~~~~----~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~   75 (211)
T cd03264           1 LQLENLTKRYG----KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIG   75 (211)
T ss_pred             CEEEEEEEEEC----CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheE
Confidence            46899999996    457999999999999 9999999999999999999999999999999999987643345567899


Q ss_pred             EEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEe
Q psy7366         423 YCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLD  502 (566)
Q Consensus       423 ~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLD  502 (566)
                      |+||++.+++.+|+.||+.+.....+.+.....+.+.++++.+++.+..++++.+||||||||++|||||+.+|++||||
T Consensus        76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD  155 (211)
T cd03264          76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVD  155 (211)
T ss_pred             EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            99999999999999999987655444333344567889999999988889999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEec
Q psy7366         503 EPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLG  559 (566)
Q Consensus       503 EPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g  559 (566)
                      |||+|||+.+++.+.++|+++++ +.|||++|||++++..+|||+++|++|++++.|
T Consensus       156 EPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g  211 (211)
T cd03264         156 EPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG  211 (211)
T ss_pred             CCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence            99999999999999999999876 599999999999999999999999999998764

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.8e-48  Score=395.41  Aligned_cols=223  Identities=22%  Similarity=0.365  Sum_probs=195.2

Q ss_pred             eEEEeeeEEEeCCcC-CCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC--------
Q psy7366         342 VLVVKRLFKIYANSK-GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD--------  412 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~-~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~--------  412 (566)
                      .|+++|+++.|+... ....+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..        
T Consensus         2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~   81 (305)
T PRK13651          2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE   81 (305)
T ss_pred             EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence            388999999996311 12369999999999999999999999999999999999999999999999875421        


Q ss_pred             -----------------chHHhcCceEEEecCCC-CCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCC-Ccccc
Q psy7366         413 -----------------SMDLVRSYIGYCPQFDA-LNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALG-HYSDR  473 (566)
Q Consensus       413 -----------------~~~~~~~~i~~v~q~~~-l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~  473 (566)
                                       .....++++||+||++. .+...||.||+.|.....+.+.....+++.++++.++|. +..++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~  161 (305)
T PRK13651         82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQR  161 (305)
T ss_pred             ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhC
Confidence                             12345678999999862 333569999998876555556556667889999999996 68899


Q ss_pred             CcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECC
Q psy7366         474 EVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNG  553 (566)
Q Consensus       474 ~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G  553 (566)
                      ++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|++++++|.|||++|||++++..+|||+++|++|
T Consensus       162 ~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~G  241 (305)
T PRK13651        162 SPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDG  241 (305)
T ss_pred             ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEECC
Confidence            99999999999999999999999999999999999999999999999999877999999999999999999999999999


Q ss_pred             EEEEecCcccc
Q psy7366         554 QFTCLGSATHL  564 (566)
Q Consensus       554 ~i~~~g~~~~l  564 (566)
                      ++++.|+++++
T Consensus       242 ~i~~~g~~~~~  252 (305)
T PRK13651        242 KIIKDGDTYDI  252 (305)
T ss_pred             EEEEECCHHHH
Confidence            99999998775

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=100.00  E-value=5.3e-48  Score=389.67  Aligned_cols=220  Identities=25%  Similarity=0.351  Sum_probs=195.5

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc----hHH
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS----MDL  416 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~----~~~  416 (566)
                      .+|+++|+++.|+    ++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++...    ...
T Consensus         6 ~~l~~~~l~~~~~----~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~   81 (269)
T PRK11831          6 NLVDMRGVSFTRG----NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYT   81 (269)
T ss_pred             ceEEEeCeEEEEC----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHH
Confidence            4799999999996    46799999999999999999999999999999999999999999999999887531    123


Q ss_pred             hcCceEEEecCCCCCCCCCHHHHHHHHHHhc-CCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCC
Q psy7366         417 VRSYIGYCPQFDALNDRLTPREHLEFYSRVR-NVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGN  495 (566)
Q Consensus       417 ~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~  495 (566)
                      .+++++|+||++.+++.+|+.||+.+..... ..+.......+.++++.+++.+..++++.+|||||||||+|||||+.+
T Consensus        82 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~  161 (269)
T PRK11831         82 VRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALE  161 (269)
T ss_pred             HhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence            4567999999999999999999998754322 223333445678899999999888999999999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         496 PPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       496 p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      |++|||||||+|||+.+++.+.++|+++.++ |.|||++|||++++..+||++++|++|++++.|+++++
T Consensus       162 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~  231 (269)
T PRK11831        162 PDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQAL  231 (269)
T ss_pred             CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHH
Confidence            9999999999999999999999999998765 89999999999999999999999999999999987765

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=100.00  E-value=3.5e-48  Score=378.11  Aligned_cols=210  Identities=27%  Similarity=0.446  Sum_probs=187.5

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc----hHHh
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS----MDLV  417 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~----~~~~  417 (566)
                      +++++|+++.|+.   ++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++...    ...+
T Consensus         1 ~l~~~~l~~~~~~---~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~   77 (214)
T TIGR02673         1 MIEFHNVSKAYPG---GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLL   77 (214)
T ss_pred             CEEEEeeeEEeCC---CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHH
Confidence            4789999999941   35799999999999999999999999999999999999999999999999987542    1235


Q ss_pred             cCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCC
Q psy7366         418 RSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPP  497 (566)
Q Consensus       418 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~  497 (566)
                      ++.++|++|++.+++.+|+.||+.+.....+.......+.+.++++.+++.+..++++.+||||||||++|||||+.+|+
T Consensus        78 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~  157 (214)
T TIGR02673        78 RRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPP  157 (214)
T ss_pred             HhheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCC
Confidence            67899999999999889999999886544433333445678899999999888899999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCE
Q psy7366         498 LIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ  554 (566)
Q Consensus       498 lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~  554 (566)
                      +|||||||+|||+.++..+.++|++++++|+|||++|||++++..+||++++|++|+
T Consensus       158 lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~  214 (214)
T TIGR02673       158 LLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR  214 (214)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence            999999999999999999999999987779999999999999999999999999985

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=100.00  E-value=5.7e-48  Score=385.57  Aligned_cols=219  Identities=26%  Similarity=0.361  Sum_probs=195.3

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc--------
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS--------  413 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~--------  413 (566)
                      +++++|+++.|+    ++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...        
T Consensus         3 ~l~~~~l~~~~~----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~   78 (250)
T PRK11264          3 AIEVKNLVKKFH----GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKG   78 (250)
T ss_pred             cEEEeceEEEEC----CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhh
Confidence            589999999996    45799999999999999999999999999999999999999999999999887431        


Q ss_pred             -hHHhcCceEEEecCCCCCCCCCHHHHHHHHHH-hcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHH
Q psy7366         414 -MDLVRSYIGYCPQFDALNDRLTPREHLEFYSR-VRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIA  491 (566)
Q Consensus       414 -~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~a  491 (566)
                       ....++.++|+||++.+++.+|+.||+.+... ..........+.+.++++.+++....++++.+|||||||||+||||
T Consensus        79 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~a  158 (250)
T PRK11264         79 LIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARA  158 (250)
T ss_pred             HHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHH
Confidence             13456789999999999988999999987532 2233333445667889999999888899999999999999999999


Q ss_pred             HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         492 LLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       492 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      |+.+|++|||||||+|||+.++..++++|+++.++|.|||++|||++++..+||++++|++|++++.|+++++
T Consensus       159 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  231 (250)
T PRK11264        159 LAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKAL  231 (250)
T ss_pred             HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence            9999999999999999999999999999999987799999999999999999999999999999999987765

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.1e-47  Score=379.53  Aligned_cols=220  Identities=24%  Similarity=0.404  Sum_probs=191.7

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc-hH---H
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS-MD---L  416 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~---~  416 (566)
                      ++++++|+++.|+.+...+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++... ..   .
T Consensus         4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~   83 (233)
T PRK11629          4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE   83 (233)
T ss_pred             ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHH
Confidence            4699999999996321114699999999999999999999999999999999999999999999999987542 11   1


Q ss_pred             h-cCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCC
Q psy7366         417 V-RSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGN  495 (566)
Q Consensus       417 ~-~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~  495 (566)
                      . ++.++|+||++.+++.+|+.||+.+.....+.......+++.++++.+++.+..++++.+||||||||++|||||+.+
T Consensus        84 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~  163 (233)
T PRK11629         84 LRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNN  163 (233)
T ss_pred             HHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence            2 367999999999999999999998765433333344456788999999999888999999999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCc
Q psy7366         496 PPLIFLDEPTSGMDPGARRFLWTCIERAVS-EGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSA  561 (566)
Q Consensus       496 p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~  561 (566)
                      |++|||||||+|||+.++..+.++|+++++ +|.|||++|||++++..+ |++++|++|++++.++.
T Consensus       164 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~-~~~~~l~~G~i~~~~~~  229 (233)
T PRK11629        164 PRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRM-SRQLEMRDGRLTAELSL  229 (233)
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhh-CEEEEEECCEEEEEecc
Confidence            999999999999999999999999999876 489999999999999874 79999999999988764

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=100.00  E-value=3.9e-48  Score=379.89  Aligned_cols=217  Identities=29%  Similarity=0.405  Sum_probs=191.5

Q ss_pred             EEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc-hH-HhcCc
Q psy7366         343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS-MD-LVRSY  420 (566)
Q Consensus       343 l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~-~~~~~  420 (566)
                      |+++|+++.|+    ++++|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++... .. ..++.
T Consensus         1 l~~~~l~~~~~----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~   76 (222)
T cd03224           1 LEVENLNAGYG----KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAG   76 (222)
T ss_pred             CEEeeEEeecC----CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcC
Confidence            46899999996    45799999999999999999999999999999999999999999999999887542 22 23567


Q ss_pred             eEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHc-CCCCccccCcCcCChhHHHHHHHHHHHcCCCCEE
Q psy7366         421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKF-ALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLI  499 (566)
Q Consensus       421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~ll  499 (566)
                      ++|+||++.+++.+|+.||+.+......  .......+.++++.+ ++.+..++++.+||||||||++|||||+.+|++|
T Consensus        77 i~~~~q~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll  154 (222)
T cd03224          77 IGYVPEGRRIFPELTVEENLLLGAYARR--RAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLL  154 (222)
T ss_pred             eEEeccccccCCCCcHHHHHHHHhhhcC--chhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            9999999999999999999987654332  222344567788888 5777789999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         500 FLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       500 lLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      ||||||+|||+.++..++++|++++++|.|||++|||++++..+||++++|++|++++.|+++++.
T Consensus       155 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  220 (222)
T cd03224         155 LLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL  220 (222)
T ss_pred             EECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence            999999999999999999999998777899999999999999999999999999999999887654

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.5e-48  Score=405.95  Aligned_cols=223  Identities=26%  Similarity=0.412  Sum_probs=196.1

Q ss_pred             eEEEeeeEEEeCCcC--------------------CCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCcc
Q psy7366         342 VLVVKRLFKIYANSK--------------------GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG  401 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~--------------------~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G  401 (566)
                      +|+++|++|.|+...                    +...+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|
T Consensus         4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG   83 (400)
T PRK10070          4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRG   83 (400)
T ss_pred             EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCC
Confidence            477777777776321                    123489999999999999999999999999999999999999999


Q ss_pred             EEEEcCccCCCc-hH----HhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcC
Q psy7366         402 NAYVMNHSIRDS-MD----LVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVR  476 (566)
Q Consensus       402 ~i~~~g~~~~~~-~~----~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~  476 (566)
                      +|+++|+++... ..    ..+++++|+||++.+|+.+|+.||+.+.....+.+.....+++.++++.++|.+..++++.
T Consensus        84 ~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~  163 (400)
T PRK10070         84 QVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPD  163 (400)
T ss_pred             EEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcc
Confidence            999999988642 11    1246799999999999999999999987655555444455678899999999988999999


Q ss_pred             cCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEccCHHHHHhhCCEEEEEECCEE
Q psy7366         477 TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS-EGRCVILTSHNMEECEALCTKLTIMVNGQF  555 (566)
Q Consensus       477 ~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~tvl~vsHd~~~~~~~~drv~~l~~G~i  555 (566)
                      +|||||||||+|||||+.+|++|||||||+|||+.++..+++.|.++++ .|+|||++|||++++..+||++++|++|++
T Consensus       164 ~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i  243 (400)
T PRK10070        164 ELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEV  243 (400)
T ss_pred             cCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEE
Confidence            9999999999999999999999999999999999999999999999876 489999999999999999999999999999


Q ss_pred             EEecCcccc
Q psy7366         556 TCLGSATHL  564 (566)
Q Consensus       556 ~~~g~~~~l  564 (566)
                      +..|+++++
T Consensus       244 ~~~g~~~~l  252 (400)
T PRK10070        244 VQVGTPDEI  252 (400)
T ss_pred             EecCCHHHH
Confidence            999988765

>PRK10908 cell division protein FtsE; Provisional

Probab=100.00  E-value=8.2e-48  Score=377.60  Aligned_cols=213  Identities=22%  Similarity=0.332  Sum_probs=189.2

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc----hHHh
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS----MDLV  417 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~----~~~~  417 (566)
                      +++++|+++.|+.   ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...    ....
T Consensus         1 ~l~~~~l~~~~~~---~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~   77 (222)
T PRK10908          1 MIRFEHVSKAYLG---GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFL   77 (222)
T ss_pred             CEEEEeeEEEecC---CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHH
Confidence            3789999999931   45799999999999999999999999999999999999999999999999887531    1234


Q ss_pred             cCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCC
Q psy7366         418 RSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPP  497 (566)
Q Consensus       418 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~  497 (566)
                      ++.++|+||++.+++.+|+.||+.+.....+.........+.++++.+++.+..++++.+||||||||++|||||+.+|+
T Consensus        78 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~  157 (222)
T PRK10908         78 RRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPA  157 (222)
T ss_pred             HhheEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCC
Confidence            67899999999888889999999876544444433445567889999999888899999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEE
Q psy7366         498 LIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTC  557 (566)
Q Consensus       498 lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~  557 (566)
                      +|||||||+|||+.+++.+.++|++++++|.|||++|||++++..+||++++|++|+++.
T Consensus       158 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~  217 (222)
T PRK10908        158 VLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG  217 (222)
T ss_pred             EEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence            999999999999999999999999997778999999999999999999999999999854

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=7.6e-48  Score=392.28  Aligned_cols=221  Identities=24%  Similarity=0.386  Sum_probs=194.4

Q ss_pred             EEEeeeEEEeCCcCC-CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-----chHH
Q psy7366         343 LVVKRLFKIYANSKG-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-----SMDL  416 (566)
Q Consensus       343 l~~~~l~~~y~~~~~-~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-----~~~~  416 (566)
                      ++++|+++.|+.... .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..     ....
T Consensus         3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~   82 (290)
T PRK13634          3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP   82 (290)
T ss_pred             EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence            789999999963211 2469999999999999999999999999999999999999999999999998742     2334


Q ss_pred             hcCceEEEecCC--CCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCC-CccccCcCcCChhHHHHHHHHHHHc
Q psy7366         417 VRSYIGYCPQFD--ALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALG-HYSDREVRTLSGGNKRKLSTAIALL  493 (566)
Q Consensus       417 ~~~~i~~v~q~~--~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqrv~la~al~  493 (566)
                      .++++||+||++  .++ ..||.||+.+.....+.+.....+++.++++.++|. ...++++.+|||||||||+|||||+
T Consensus        83 ~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~  161 (290)
T PRK13634         83 LRKKVGIVFQFPEHQLF-EETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLA  161 (290)
T ss_pred             HHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence            567899999997  355 469999998865444445555556788999999997 6679999999999999999999999


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         494 GNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       494 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      .+|++|||||||+|||+.++..++++|++++++ |.|||++|||++++..+|||+++|++|+++++|+++++
T Consensus       162 ~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~  233 (290)
T PRK13634        162 MEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREI  233 (290)
T ss_pred             cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence            999999999999999999999999999999765 99999999999999999999999999999999988764

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=9.5e-48  Score=391.16  Aligned_cols=222  Identities=23%  Similarity=0.377  Sum_probs=194.2

Q ss_pred             eEEEeeeEEEeCCcC-CCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-----chH
Q psy7366         342 VLVVKRLFKIYANSK-GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-----SMD  415 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~-~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-----~~~  415 (566)
                      .++++|+++.|+... ..+.+|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|+++..     ...
T Consensus         2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~   81 (287)
T PRK13641          2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK   81 (287)
T ss_pred             EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence            478999999996211 02469999999999999999999999999999999999999999999999998743     123


Q ss_pred             HhcCceEEEecCC--CCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCC-CccccCcCcCChhHHHHHHHHHHH
Q psy7366         416 LVRSYIGYCPQFD--ALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALG-HYSDREVRTLSGGNKRKLSTAIAL  492 (566)
Q Consensus       416 ~~~~~i~~v~q~~--~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqrv~la~al  492 (566)
                      ..+..++|+||++  .++ .+|+.||+.+.............+++.++++.+++. ...++++.+||||||||++|||||
T Consensus        82 ~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral  160 (287)
T PRK13641         82 KLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVM  160 (287)
T ss_pred             HHHhceEEEEeChhhhhc-cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHH
Confidence            4567899999997  355 579999998765433444444556788999999997 678999999999999999999999


Q ss_pred             cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         493 LGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       493 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      +.+|++|||||||+|||+.++..+.++|++++++|.|||++|||++++..+||++++|++|+++..|+++++
T Consensus       161 ~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~  232 (287)
T PRK13641        161 AYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEI  232 (287)
T ss_pred             HcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            999999999999999999999999999999977799999999999999999999999999999999988765

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=100.00  E-value=1.2e-48  Score=352.86  Aligned_cols=215  Identities=22%  Similarity=0.342  Sum_probs=191.7

Q ss_pred             EEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceE
Q psy7366         343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIG  422 (566)
Q Consensus       343 l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~  422 (566)
                      +.++++.++|+.      .-=.++++|+.||+++|+||+||||||||++|+|+..|.+|+|+++|++.+.... ..+-++
T Consensus         2 l~L~~V~~~y~~------~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P-~~RPVS   74 (231)
T COG3840           2 LALDDVRFSYGH------LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPP-AERPVS   74 (231)
T ss_pred             ccccceEEeeCc------ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCc-ccCChh
Confidence            567889999962      2346899999999999999999999999999999999999999999999865332 234599


Q ss_pred             EEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEe
Q psy7366         423 YCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLD  502 (566)
Q Consensus       423 ~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLD  502 (566)
                      ++||+.++|..+||.+|+.++..-.-.-....+++++.++.++|+..+.++.|.+|||||||||+|||+|+++.+|||||
T Consensus        75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLD  154 (231)
T COG3840          75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLD  154 (231)
T ss_pred             hhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEec
Confidence            99999999999999999988654221123455678899999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         503 EPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       503 EPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      |||++|||.-|.++..++.++..+ +.|++||||.++++.+++||++++++|+|.++|+.+++
T Consensus       155 EPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~  217 (231)
T COG3840         155 EPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQEL  217 (231)
T ss_pred             CchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHH
Confidence            999999999999999999999865 99999999999999999999999999999999998765

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=3.5e-48  Score=365.49  Aligned_cols=220  Identities=30%  Similarity=0.433  Sum_probs=196.2

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC--chHHhc
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD--SMDLVR  418 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~--~~~~~~  418 (566)
                      .+|+++|++..|+    ...+|++|||++++||+++|+|+||+|||||||+|+|+.++.+|+|.++|++++.  .....+
T Consensus         2 ~mL~v~~l~~~YG----~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r   77 (237)
T COG0410           2 PMLEVENLSAGYG----KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERAR   77 (237)
T ss_pred             CceeEEeEeeccc----ceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHh
Confidence            3689999999997    5789999999999999999999999999999999999999999999999999976  345678


Q ss_pred             CceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcC-CCCccccCcCcCChhHHHHHHHHHHHcCCCC
Q psy7366         419 SYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFA-LGHYSDREVRTLSGGNKRKLSTAIALLGNPP  497 (566)
Q Consensus       419 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~LSgGqkqrv~la~al~~~p~  497 (566)
                      ..|+||||...+|+.+||.||+.++...... +.......+++.+.|- |.+..+++.++|||||||.++|||||+.+|+
T Consensus        78 ~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~-~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~Pk  156 (237)
T COG0410          78 LGIAYVPEGRRIFPRLTVEENLLLGAYARRD-KEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPK  156 (237)
T ss_pred             CCeEeCcccccchhhCcHHHHHhhhhhcccc-cccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCC
Confidence            8999999999999999999999886543221 1111222566777764 5677899999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         498 LIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       498 lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      +|+|||||.||-|.-.++|.+.|++++++ |.||++|-++..++.+++||.++|.+|+++.+|+.+++.
T Consensus       157 lLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~  225 (237)
T COG0410         157 LLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELL  225 (237)
T ss_pred             EEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHh
Confidence            99999999999999999999999999976 789999999999999999999999999999999988874

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=100.00  E-value=1.1e-47  Score=388.81  Aligned_cols=337  Identities=25%  Similarity=0.375  Sum_probs=248.6

Q ss_pred             HHHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCC
Q psy7366          70 IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN  149 (566)
Q Consensus        70 ~~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~  149 (566)
                      +.+++.+.++|+..++|.+++||||+.||++||.|++++++++++||||++||...|-..-++++++.+.+++||++.||
T Consensus       193 ~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHD  272 (591)
T COG1245         193 KFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHD  272 (591)
T ss_pred             cHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEech
Confidence            56788999999999999999999999999999999999999999999999999999999999999998889999999999


Q ss_pred             hhHHHhhcCEEEEEeCCEEEEecChhHHHhhccCccccCCCCCCCCccchhHHHhhccCCCCccccCCCccccccccccc
Q psy7366         150 MEECEALCTKLTIMVNGQFTCLGSATHLKSKSMALPVSGNDLGRGDPVRSELSRALNDGSGSGIRNSARPEVSGFYNENI  229 (566)
Q Consensus       150 ~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (566)
                      +.-++-++|-|.++.. +--.+|-...        |..         ....+-..+.+                      
T Consensus       273 LavLD~lsD~vhI~YG-~pg~YGvvs~--------p~s---------vr~gIN~yL~G----------------------  312 (591)
T COG1245         273 LAVLDYLSDFVHILYG-EPGVYGVVSK--------PKS---------VRVGINEYLKG----------------------  312 (591)
T ss_pred             HHHHHHhhheeEEEec-CCccceEecc--------chH---------HHHHHHHHHhc----------------------
Confidence            9999999999998863 2111111000        000         00000000000                      


Q ss_pred             CCccchhhhhhhHHHHHHHHHHHHhhhhheeeccCCeeeeeeccchhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy7366         230 DGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNGTRLVAVNIWAWRIIGKNLTCMACHGALYSAINLSIEYKVFSRCF  309 (566)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (566)
                                                    +.+..                                             
T Consensus       313 ------------------------------yl~~E---------------------------------------------  317 (591)
T COG1245         313 ------------------------------YLPEE---------------------------------------------  317 (591)
T ss_pred             ------------------------------cCchh---------------------------------------------
Confidence                                          00000                                             


Q ss_pred             cccccCCCCCCCcchhHHHHHHhhhcCCCCCCeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHH
Q psy7366         310 TRSNLHPVPVSLEEDDVRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTF  389 (566)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl  389 (566)
                       +.+...-+ .....     .. ..........++..++.|.|+     -..|+-=.=+|+.||++|++||||.||||+.
T Consensus       318 -N~R~R~~~-I~F~~-----~~-~~~~~~~~~lv~y~~~~k~~g-----~F~L~V~~G~i~~gEvigilGpNgiGKTTFv  384 (591)
T COG1245         318 -NVRFRPEE-IEFEE-----KP-PRDDKARDTLVEYPDLKKTYG-----DFKLEVEEGEIYDGEVIGILGPNGIGKTTFV  384 (591)
T ss_pred             -cccccccc-eeeec-----cC-cccccccceeeecchheeecC-----ceEEEecCCeeecceEEEEECCCCcchHHHH
Confidence             00000000 00000     00 000000022455666777764     1234333445677899999999999999999


Q ss_pred             HHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCC
Q psy7366         390 KMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGH  469 (566)
Q Consensus       390 ~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~  469 (566)
                      ++|+|.++|++|.    ..+         -+++|=||-..-..+.||.+.+.-..... ....   ....++++-++|++
T Consensus       385 k~LAG~ikPdeg~----~~~---------~~vSyKPQyI~~~~~gtV~~~l~~~~~~~-~~~s---~~~~ei~~pl~l~~  447 (591)
T COG1245         385 KLLAGVIKPDEGS----EED---------LKVSYKPQYISPDYDGTVEDLLRSAIRSA-FGSS---YFKTEIVKPLNLED  447 (591)
T ss_pred             HHHhccccCCCCC----Ccc---------ceEeecceeecCCCCCcHHHHHHHhhhhh-cccc---hhHHhhcCccchHH
Confidence            9999999999997    222         25899999755455679998775433211 1111   12357888899999


Q ss_pred             ccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEE
Q psy7366         470 YSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLT  548 (566)
Q Consensus       470 ~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~  548 (566)
                      .+++++..|||||.|||+||.+|..+++++|||||++.||.+.|-.+.+.|++..++ ++|.++|-||+-++.-++||++
T Consensus       448 i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~i  527 (591)
T COG1245         448 LLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLI  527 (591)
T ss_pred             HHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEE
Confidence            999999999999999999999999999999999999999999999999999998865 8999999999999999999999


Q ss_pred             EEE
Q psy7366         549 IMV  551 (566)
Q Consensus       549 ~l~  551 (566)
                      |+.
T Consensus       528 vF~  530 (591)
T COG1245         528 VFE  530 (591)
T ss_pred             EEe
Confidence            985

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=100.00  E-value=1e-47  Score=401.16  Aligned_cols=207  Identities=23%  Similarity=0.378  Sum_probs=187.5

Q ss_pred             CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCc----cCCC-ch---HHh-cCceEEEecCC
Q psy7366         358 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH----SIRD-SM---DLV-RSYIGYCPQFD  428 (566)
Q Consensus       358 ~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~----~~~~-~~---~~~-~~~i~~v~q~~  428 (566)
                      ...+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+    ++.. ..   ... +++++|+||++
T Consensus        36 ~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~  115 (382)
T TIGR03415        36 LVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKF  115 (382)
T ss_pred             CEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCC
Confidence            567899999999999999999999999999999999999999999999996    3432 11   122 36899999999


Q ss_pred             CCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCC
Q psy7366         429 ALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGM  508 (566)
Q Consensus       429 ~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gL  508 (566)
                      .+++.+|+.||+.+.....+.+..+...++.++++.++|.+..++++.+|||||||||+|||||+.+|+||||||||+||
T Consensus       116 ~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~L  195 (382)
T TIGR03415       116 ALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSAL  195 (382)
T ss_pred             cCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccC
Confidence            99999999999998765555555555677899999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         509 DPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       509 D~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      |+.++..+++.|.+++++ |+|||++|||++++.++|||+++|++|++++.|+++++
T Consensus       196 D~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei  252 (382)
T TIGR03415       196 DPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEI  252 (382)
T ss_pred             CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence            999999999999999875 99999999999999999999999999999999998876

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.3e-47  Score=394.45  Aligned_cols=224  Identities=26%  Similarity=0.390  Sum_probs=195.9

Q ss_pred             CCeEEEeeeEEEeCCcC-CCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC------
Q psy7366         340 GDVLVVKRLFKIYANSK-GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD------  412 (566)
Q Consensus       340 ~~~l~~~~l~~~y~~~~-~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~------  412 (566)
                      ..+|+++|+++.|+... ..+++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|.++..      
T Consensus        19 ~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~   98 (320)
T PRK13631         19 DIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHE   98 (320)
T ss_pred             CceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccc
Confidence            35799999999996311 12469999999999999999999999999999999999999999999999987643      


Q ss_pred             -----------chHHhcCceEEEecCC--CCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCC-CccccCcCcC
Q psy7366         413 -----------SMDLVRSYIGYCPQFD--ALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALG-HYSDREVRTL  478 (566)
Q Consensus       413 -----------~~~~~~~~i~~v~q~~--~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~L  478 (566)
                                 .....+++++||||++  .+++ .|+.||+.+.....+.+..+...++.++++.+++. ...++++.+|
T Consensus        99 ~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~L  177 (320)
T PRK13631         99 LITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGL  177 (320)
T ss_pred             ccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccC
Confidence                       1234677899999997  4665 59999998765433444445556788999999996 6789999999


Q ss_pred             ChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEe
Q psy7366         479 SGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCL  558 (566)
Q Consensus       479 SgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~  558 (566)
                      ||||||||+|||||+.+|++|||||||+|||+.++..++++|+++.++|.|||++|||++++..+|||+++|++|++++.
T Consensus       178 SgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i~~~  257 (320)
T PRK13631        178 SGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKT  257 (320)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence            99999999999999999999999999999999999999999999877799999999999999999999999999999999


Q ss_pred             cCcccc
Q psy7366         559 GSATHL  564 (566)
Q Consensus       559 g~~~~l  564 (566)
                      |+++++
T Consensus       258 g~~~~~  263 (320)
T PRK13631        258 GTPYEI  263 (320)
T ss_pred             CCHHHH
Confidence            998764

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=9.5e-48  Score=381.87  Aligned_cols=219  Identities=34%  Similarity=0.528  Sum_probs=195.5

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-ch-HHhcC
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SM-DLVRS  419 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~-~~~~~  419 (566)
                      +++++|+++.|+    ++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. .. ...++
T Consensus         3 ~l~~~~l~~~~~----~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~   78 (241)
T PRK10895          3 TLTAKNLAKAYK----GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARR   78 (241)
T ss_pred             eEEEeCcEEEeC----CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHh
Confidence            589999999996    4679999999999999999999999999999999999999999999999998754 22 23457


Q ss_pred             ceEEEecCCCCCCCCCHHHHHHHHHHhc-CCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCE
Q psy7366         420 YIGYCPQFDALNDRLTPREHLEFYSRVR-NVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPL  498 (566)
Q Consensus       420 ~i~~v~q~~~l~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~l  498 (566)
                      .++|+||++.+++.+|+.||+.+..... ..........+.++++.+++.+..++++.+|||||||||+|||||+.+|++
T Consensus        79 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l  158 (241)
T PRK10895         79 GIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKF  158 (241)
T ss_pred             CeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCE
Confidence            8999999999999899999998754332 122333456788999999998888999999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         499 IFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       499 llLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      |||||||+|||+.++..+++++++++++|.|||++||+++++..+||++++|++|++++.|+++++
T Consensus       159 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~  224 (241)
T PRK10895        159 ILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEI  224 (241)
T ss_pred             EEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHH
Confidence            999999999999999999999999887799999999999999999999999999999999988765

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=100.00  E-value=9.9e-48  Score=374.86  Aligned_cols=210  Identities=25%  Similarity=0.383  Sum_probs=187.1

Q ss_pred             EEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc----hHHhc
Q psy7366         343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS----MDLVR  418 (566)
Q Consensus       343 l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~----~~~~~  418 (566)
                      ++++|+++.|+.   .+.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++...    ....+
T Consensus         1 l~~~~l~~~~~~---~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~   77 (214)
T cd03292           1 IEFINVTKTYPN---GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLR   77 (214)
T ss_pred             CEEEEEEEEeCC---CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHH
Confidence            468999999962   35799999999999999999999999999999999999999999999999987531    12356


Q ss_pred             CceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCE
Q psy7366         419 SYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPL  498 (566)
Q Consensus       419 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~l  498 (566)
                      +.++|+||++.+++.+|+.||+.+.....+.......+++.++++.+++.+..++++.+||||||||++|||||+.+|++
T Consensus        78 ~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l  157 (214)
T cd03292          78 RKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTI  157 (214)
T ss_pred             HheEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCE
Confidence            78999999999999999999998865444333334456788999999998888999999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEE
Q psy7366         499 IFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQF  555 (566)
Q Consensus       499 llLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i  555 (566)
                      |||||||+|||+.+++.+.+.|++++++|.|||++|||++++..+||++++|++|++
T Consensus       158 lllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~  214 (214)
T cd03292         158 LIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL  214 (214)
T ss_pred             EEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence            999999999999999999999999877799999999999999999999999999974

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=100.00  E-value=1.5e-47  Score=384.02  Aligned_cols=219  Identities=23%  Similarity=0.405  Sum_probs=193.9

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCc
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSY  420 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~  420 (566)
                      +++++|+++.|+    ++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. .....++.
T Consensus         2 ~l~~~~l~~~~~----~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~   77 (258)
T PRK13548          2 MLEARNLSVRLG----GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARR   77 (258)
T ss_pred             eEEEEeEEEEeC----CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhh
Confidence            588999999996    4579999999999999999999999999999999999999999999999988754 23344567


Q ss_pred             eEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHc------C
Q psy7366         421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALL------G  494 (566)
Q Consensus       421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~------~  494 (566)
                      ++|+||++.+++.+|+.||+.+...............+.++++.+++.+..++++.+|||||||||+|||||+      .
T Consensus        78 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~  157 (258)
T PRK13548         78 RAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDG  157 (258)
T ss_pred             eEEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCC
Confidence            9999999988788999999987543222222333456788999999988889999999999999999999999      5


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         495 NPPLIFLDEPTSGMDPGARRFLWTCIERAV-SEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       495 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~-~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      +|++|||||||+|||+.++..+.++|++++ ++|.|||++|||++++..+||++++|++|++++.|+++++
T Consensus       158 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  228 (258)
T PRK13548        158 PPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEV  228 (258)
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHH
Confidence            999999999999999999999999999987 5689999999999999999999999999999999987764

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.1e-47  Score=389.22  Aligned_cols=221  Identities=29%  Similarity=0.430  Sum_probs=196.5

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCc
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSY  420 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~  420 (566)
                      +++++|+++.|+.. +.+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.. .....+++
T Consensus         4 ~l~~~~l~~~~~~~-~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~   82 (279)
T PRK13650          4 IIEVKNLTFKYKED-QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHK   82 (279)
T ss_pred             eEEEEeEEEEcCCC-CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhh
Confidence            68999999999631 12459999999999999999999999999999999999999999999999998864 33445678


Q ss_pred             eEEEecCCC-CCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEE
Q psy7366         421 IGYCPQFDA-LNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLI  499 (566)
Q Consensus       421 i~~v~q~~~-l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~ll  499 (566)
                      ++|+||++. +++.+||.||+.+.....+....+..+++.++++.+++.+..++++.+||||||||++|||||+.+|++|
T Consensus        83 i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lL  162 (279)
T PRK13650         83 IGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKII  162 (279)
T ss_pred             ceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence            999999974 6777899999987654444455555667899999999998899999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         500 FLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       500 lLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      ||||||+|||+.++..++++|++++++ |.|||++|||++++. .|||+++|++|+++..|+++++
T Consensus       163 lLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~-~~dri~~l~~G~i~~~g~~~~~  227 (279)
T PRK13650        163 ILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA-LSDRVLVMKNGQVESTSTPREL  227 (279)
T ss_pred             EEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEEECCHHHH
Confidence            999999999999999999999999875 999999999999994 7999999999999999988764

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=100.00  E-value=1.7e-47  Score=380.30  Aligned_cols=218  Identities=27%  Similarity=0.353  Sum_probs=193.3

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc-hH-HhcC
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS-MD-LVRS  419 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~-~~~~  419 (566)
                      +|+++|+++.|+    ++++|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++... .. ..+.
T Consensus         2 ~i~~~~l~~~~~----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~   77 (242)
T TIGR03411         2 ILYLEGLSVSFD----GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARA   77 (242)
T ss_pred             eEEEEeeEEEcC----CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhc
Confidence            689999999996    45799999999999999999999999999999999999999999999999887542 22 2346


Q ss_pred             ceEEEecCCCCCCCCCHHHHHHHHHHhc--------CCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHH
Q psy7366         420 YIGYCPQFDALNDRLTPREHLEFYSRVR--------NVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIA  491 (566)
Q Consensus       420 ~i~~v~q~~~l~~~~tv~e~l~~~~~~~--------~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~a  491 (566)
                      .++|+||++.+++.+|+.||+.+.....        ..........+.++++.+++.+..++++.+|||||+|||+||||
T Consensus        78 ~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~lara  157 (242)
T TIGR03411        78 GIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGML  157 (242)
T ss_pred             CeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHH
Confidence            7999999999999999999998754311        11122345568899999999988899999999999999999999


Q ss_pred             HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         492 LLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       492 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      |+.+|++|||||||+|||+.++..++++|+++.+ +.|||++||+++++..+||++++|++|++++.|+++++
T Consensus       158 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~  229 (242)
T TIGR03411       158 LMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQV  229 (242)
T ss_pred             HhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHH
Confidence            9999999999999999999999999999999866 78999999999999999999999999999999987765

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=100.00  E-value=6.6e-48  Score=383.50  Aligned_cols=220  Identities=26%  Similarity=0.393  Sum_probs=192.8

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc----hHHh
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS----MDLV  417 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~----~~~~  417 (566)
                      +++++|+++.|+.   ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...    ....
T Consensus         1 ~l~~~~l~~~~~~---~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~   77 (243)
T TIGR02315         1 MLEVENLSKVYPN---GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKL   77 (243)
T ss_pred             CeEEEeeeeecCC---CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHH
Confidence            3789999999951   35699999999999999999999999999999999999999999999999887531    1234


Q ss_pred             cCceEEEecCCCCCCCCCHHHHHHHHHHh--------cCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHH
Q psy7366         418 RSYIGYCPQFDALNDRLTPREHLEFYSRV--------RNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTA  489 (566)
Q Consensus       418 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~--------~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la  489 (566)
                      ++.++|+||++.+++.+|+.||+.+....        .........+++.++++.+++....++++.+|||||||||+||
T Consensus        78 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la  157 (243)
T TIGR02315        78 RRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIA  157 (243)
T ss_pred             HhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHH
Confidence            67899999999999999999999764211        1111233355688899999998888999999999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         490 IALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       490 ~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      |||+.+|++|||||||+|||+.++..+.++|++++++ |+|||++|||++++.++||++++|++|++++.|+++++
T Consensus       158 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~  233 (243)
T TIGR02315       158 RALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL  233 (243)
T ss_pred             HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHh
Confidence            9999999999999999999999999999999998765 89999999999999999999999999999999988765

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=100.00  E-value=8e-48  Score=374.71  Aligned_cols=208  Identities=30%  Similarity=0.497  Sum_probs=182.7

Q ss_pred             EeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCceEE
Q psy7366         345 VKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSYIGY  423 (566)
Q Consensus       345 ~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~i~~  423 (566)
                      ++|+++.|+..  .+.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++.. .....++.++|
T Consensus         2 ~~~l~~~~~~~--~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~   79 (211)
T cd03225           2 LKNLSFSYPDG--ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL   79 (211)
T ss_pred             ceeEEEecCCC--CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence            67899999621  1579999999999999999999999999999999999999999999999988754 23445678999


Q ss_pred             EecCCC-CCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEe
Q psy7366         424 CPQFDA-LNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLD  502 (566)
Q Consensus       424 v~q~~~-l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLD  502 (566)
                      +||++. .++.+|+.||+.+.....+.........+.++++.+++.+..++++.+|||||||||+|||||+.+|++||||
T Consensus        80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllD  159 (211)
T cd03225          80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLD  159 (211)
T ss_pred             EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            999975 3567899999987644333333334556788999999988889999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCE
Q psy7366         503 EPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ  554 (566)
Q Consensus       503 EPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~  554 (566)
                      |||+|||+.++..+++.|++++++|.|||++|||++++..+||++++|++|+
T Consensus       160 EPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~  211 (211)
T cd03225         160 EPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK  211 (211)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence            9999999999999999999998779999999999999999999999999985

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=100.00  E-value=2e-47  Score=380.98  Aligned_cols=217  Identities=24%  Similarity=0.380  Sum_probs=193.0

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCC-----ccEEEEcCccCCC---c
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT-----SGNAYVMNHSIRD---S  413 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~-----~G~i~~~g~~~~~---~  413 (566)
                      +++++|+++.|+    +..+++|+||+|++||+++|+||||||||||+++|+|+++|+     +|+|.++|+++..   .
T Consensus         1 ~l~~~~l~~~~~----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~   76 (247)
T TIGR00972         1 AIEIENLNLFYG----EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKID   76 (247)
T ss_pred             CEEEEEEEEEEC----CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccc
Confidence            478999999996    456999999999999999999999999999999999999998     9999999998753   2


Q ss_pred             hHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCC-CchHHHHHHHHHHHHcCCC----CccccCcCcCChhHHHHHHH
Q psy7366         414 MDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNV-PSVLLNTIVNESLNKFALG----HYSDREVRTLSGGNKRKLST  488 (566)
Q Consensus       414 ~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqrv~l  488 (566)
                      ....++.++|+||++.+++ .|+.||+.+.....+. +.......+.++++.+++.    +..++++.+||||||||++|
T Consensus        77 ~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~l  155 (247)
T TIGR00972        77 VVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCI  155 (247)
T ss_pred             hHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHH
Confidence            3345678999999998888 9999999876544332 2334456788999999997    67789999999999999999


Q ss_pred             HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         489 AIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       489 a~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      ||||+.+|++|||||||+|||+.++..++++|+++++ +.|||++|||++++..+||++++|++|++++.|+++++
T Consensus       156 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  230 (247)
T TIGR00972       156 ARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQI  230 (247)
T ss_pred             HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            9999999999999999999999999999999999876 48999999999999999999999999999999988765

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=100.00  E-value=2.6e-47  Score=382.29  Aligned_cols=220  Identities=22%  Similarity=0.346  Sum_probs=195.3

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC--------
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD--------  412 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~--------  412 (566)
                      ..++++|+++.|+    ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..        
T Consensus         4 ~~l~~~~l~~~~~----~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~   79 (257)
T PRK10619          4 NKLNVIDLHKRYG----EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL   79 (257)
T ss_pred             ccEEEeeeEEEEC----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccc
Confidence            4689999999996    4679999999999999999999999999999999999999999999999987642        


Q ss_pred             ------chHHhcCceEEEecCCCCCCCCCHHHHHHHHH-HhcCCCchHHHHHHHHHHHHcCCCCcc-ccCcCcCChhHHH
Q psy7366         413 ------SMDLVRSYIGYCPQFDALNDRLTPREHLEFYS-RVRNVPSVLLNTIVNESLNKFALGHYS-DREVRTLSGGNKR  484 (566)
Q Consensus       413 ------~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgGqkq  484 (566)
                            .....+++++|+||++.+++.+|++||+.+.. ............++.++++.+++.+.. ++++.+|||||||
T Consensus        80 ~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~q  159 (257)
T PRK10619         80 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQ  159 (257)
T ss_pred             ccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHH
Confidence                  12345678999999999999999999997643 223333344456788999999998754 8899999999999


Q ss_pred             HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         485 KLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       485 rv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      |++|||||+.+|++|||||||+|||+.+++.+.++|++++++|+|||++|||++++..+|||+++|++|++++.|+++++
T Consensus       160 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  239 (257)
T PRK10619        160 RVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQL  239 (257)
T ss_pred             HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence            99999999999999999999999999999999999999987799999999999999999999999999999999987764

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.5e-47  Score=381.52  Aligned_cols=212  Identities=25%  Similarity=0.393  Sum_probs=189.7

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCce
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYI  421 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i  421 (566)
                      +++++|+++.|+    ++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++...    ...+
T Consensus         1 ml~~~~l~~~~~----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~----~~~~   72 (255)
T PRK11248          1 MLQISHLYADYG----GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP----GAER   72 (255)
T ss_pred             CEEEEEEEEEeC----CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC----CCcE
Confidence            478999999996    45799999999999999999999999999999999999999999999999887531    2358


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEE
Q psy7366         422 GYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFL  501 (566)
Q Consensus       422 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllL  501 (566)
                      +|++|++.+++.+|+.||+.+.....+.......+.+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||
T Consensus        73 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllL  152 (255)
T PRK11248         73 GVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLL  152 (255)
T ss_pred             EEEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            99999999998899999998765444444444456788999999998888999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEccCHHHHHhhCCEEEEEE--CCEEEEecCc
Q psy7366         502 DEPTSGMDPGARRFLWTCIERAVS-EGRCVILTSHNMEECEALCTKLTIMV--NGQFTCLGSA  561 (566)
Q Consensus       502 DEPt~gLD~~~~~~l~~~l~~~~~-~g~tvl~vsHd~~~~~~~~drv~~l~--~G~i~~~g~~  561 (566)
                      ||||+|||+.++..+.++|+++.+ +|.|||++|||++++..+||++++|+  +|++++.++.
T Consensus       153 DEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~  215 (255)
T PRK11248        153 DEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL  215 (255)
T ss_pred             eCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence            999999999999999999999854 58999999999999999999999998  5999988754

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.4e-47  Score=386.99  Aligned_cols=219  Identities=25%  Similarity=0.409  Sum_probs=192.9

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC---chHHhc
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD---SMDLVR  418 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~---~~~~~~  418 (566)
                      +|+++|+++.|+    ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..   .....+
T Consensus         1 ml~~~~l~~~~~----~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~   76 (271)
T PRK13638          1 MLATSDLWFRYQ----DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALR   76 (271)
T ss_pred             CeEEEEEEEEcC----CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHH
Confidence            478999999996    4579999999999999999999999999999999999999999999999998742   223456


Q ss_pred             CceEEEecCCCC-CCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCC
Q psy7366         419 SYIGYCPQFDAL-NDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPP  497 (566)
Q Consensus       419 ~~i~~v~q~~~l-~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~  497 (566)
                      +.++|+||++.. +...|+.+|+.+.....+.......+.+.++++.+++.+..++++.+||||||||++|||||+.+|+
T Consensus        77 ~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~  156 (271)
T PRK13638         77 QQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQAR  156 (271)
T ss_pred             hheEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCC
Confidence            789999999752 3456899999876444343333444567889999999888899999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         498 LIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       498 lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      +|||||||+|||+.++..+.++|++++++|.|||++|||++++..+||++++|++|++++.|+++++
T Consensus       157 lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  223 (271)
T PRK13638        157 YLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEV  223 (271)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            9999999999999999999999999887789999999999999999999999999999999988764

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=100.00  E-value=9.1e-48  Score=372.67  Aligned_cols=203  Identities=30%  Similarity=0.412  Sum_probs=179.9

Q ss_pred             EeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEE
Q psy7366         345 VKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYC  424 (566)
Q Consensus       345 ~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v  424 (566)
                      ++|+++.|+.   .+.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..  ...+++++|+
T Consensus         2 ~~~l~~~~~~---~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~--~~~~~~i~~~   76 (205)
T cd03226           2 IENISFSYKK---GTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA--KERRKSIGYV   76 (205)
T ss_pred             cccEEEEeCC---cCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh--HHhhcceEEE
Confidence            5789999962   1679999999999999999999999999999999999999999999999988743  3345689999


Q ss_pred             ecCCC-CCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeC
Q psy7366         425 PQFDA-LNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDE  503 (566)
Q Consensus       425 ~q~~~-l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDE  503 (566)
                      ||++. .+..+|+.||+.++.....  .  ....+.++++.+++.+..++++.+||||||||++|||||+.+|++|||||
T Consensus        77 ~q~~~~~~~~~tv~e~l~~~~~~~~--~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE  152 (205)
T cd03226          77 MQDVDYQLFTDSVREELLLGLKELD--A--GNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDE  152 (205)
T ss_pred             ecChhhhhhhccHHHHHhhhhhhcC--c--cHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence            99974 3345799999987543222  1  12467899999999988999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEE
Q psy7366         504 PTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFT  556 (566)
Q Consensus       504 Pt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~  556 (566)
                      ||+|||+.+++.+.++|++++++|.|||++|||++++..+||++++|++|+++
T Consensus       153 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv  205 (205)
T cd03226         153 PTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV  205 (205)
T ss_pred             CCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence            99999999999999999999777999999999999999999999999999874

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=100.00  E-value=1.8e-47  Score=374.87  Aligned_cols=214  Identities=25%  Similarity=0.412  Sum_probs=185.7

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc-hH---Hh
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS-MD---LV  417 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~---~~  417 (566)
                      +++++|+++.|+...+.+++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++... ..   ..
T Consensus         1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~   80 (221)
T TIGR02211         1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKL   80 (221)
T ss_pred             CEEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHH
Confidence            378999999996322225699999999999999999999999999999999999999999999999987542 11   12


Q ss_pred             c-CceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCC
Q psy7366         418 R-SYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNP  496 (566)
Q Consensus       418 ~-~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p  496 (566)
                      + +.++|+||++.+++.+|++||+.+.............+.+.++++.+++.+..++++.+|||||||||+|||||+.+|
T Consensus        81 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p  160 (221)
T TIGR02211        81 RNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQP  160 (221)
T ss_pred             HHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCC
Confidence            3 679999999999988999999987544333333334556789999999998889999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEE
Q psy7366         497 PLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFT  556 (566)
Q Consensus       497 ~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~  556 (566)
                      ++|||||||+|||+.++..+.++|++++++ |.|||++|||++++.. ||++++|++|+++
T Consensus       161 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~-~d~v~~l~~G~i~  220 (221)
T TIGR02211       161 SLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKK-LDRVLEMKDGQLF  220 (221)
T ss_pred             CEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh-cCEEEEEeCCEec
Confidence            999999999999999999999999999764 8999999999999865 8999999999975

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=100.00  E-value=1.4e-47  Score=373.58  Aligned_cols=209  Identities=24%  Similarity=0.382  Sum_probs=186.6

Q ss_pred             EEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC---chHHhcC
Q psy7366         343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD---SMDLVRS  419 (566)
Q Consensus       343 l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~---~~~~~~~  419 (566)
                      ++++|+++.|+    ++.+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|+++..   .....++
T Consensus         1 l~~~~l~~~~~----~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~   76 (213)
T cd03262           1 IEIKNLHKSFG----DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQ   76 (213)
T ss_pred             CEEEEEEEEEC----CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHh
Confidence            46899999996    4579999999999999999999999999999999999999999999999998742   2234567


Q ss_pred             ceEEEecCCCCCCCCCHHHHHHHHHH-hcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCE
Q psy7366         420 YIGYCPQFDALNDRLTPREHLEFYSR-VRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPL  498 (566)
Q Consensus       420 ~i~~v~q~~~l~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~l  498 (566)
                      .++|+||++.+++.+|+.||+.+... ..+.......+.+.++++.+++.+..++++.+||||||||++|||||+.+|++
T Consensus        77 ~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l  156 (213)
T cd03262          77 KVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKV  156 (213)
T ss_pred             cceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCE
Confidence            89999999999998999999987542 22333334456778899999998888999999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEE
Q psy7366         499 IFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQF  555 (566)
Q Consensus       499 llLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i  555 (566)
                      |||||||+|||+.+++.+.++|++++++|.|||++|||++++..+||++++|++|++
T Consensus       157 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i  213 (213)
T cd03262         157 MLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI  213 (213)
T ss_pred             EEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence            999999999999999999999999987789999999999999999999999999974

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.2e-47  Score=388.21  Aligned_cols=222  Identities=23%  Similarity=0.391  Sum_probs=194.6

Q ss_pred             eEEEeeeEEEeCCcC-CCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-----chH
Q psy7366         342 VLVVKRLFKIYANSK-GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-----SMD  415 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~-~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-----~~~  415 (566)
                      .++++|+++.|+... ..+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++..     ...
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~   81 (286)
T PRK13646          2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR   81 (286)
T ss_pred             EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence            378999999996311 12469999999999999999999999999999999999999999999999998743     123


Q ss_pred             HhcCceEEEecCC--CCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCC-CccccCcCcCChhHHHHHHHHHHH
Q psy7366         416 LVRSYIGYCPQFD--ALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALG-HYSDREVRTLSGGNKRKLSTAIAL  492 (566)
Q Consensus       416 ~~~~~i~~v~q~~--~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqrv~la~al  492 (566)
                      ..+++|||+||++  .+++ .|+.||+.+.....+.+.....+++.++++.+|+. +..++++.+|||||||||+|||||
T Consensus        82 ~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL  160 (286)
T PRK13646         82 PVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSIL  160 (286)
T ss_pred             HHHhheEEEecChHhccch-hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence            5677899999986  3555 59999998865444445555566788999999997 678899999999999999999999


Q ss_pred             cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         493 LGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       493 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      +.+|++|||||||+|||+.++..+.++|+++.++ |.|||++|||++++..+|||+++|++|++++.|+++++
T Consensus       161 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~  233 (286)
T PRK13646        161 AMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKEL  233 (286)
T ss_pred             HhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence            9999999999999999999999999999999764 89999999999999999999999999999999988764

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.4e-47  Score=392.62  Aligned_cols=224  Identities=24%  Similarity=0.353  Sum_probs=197.6

Q ss_pred             CeEEEeeeEEEeCCcCC------CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc-
Q psy7366         341 DVLVVKRLFKIYANSKG------TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS-  413 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-  413 (566)
                      .+|+++||++.|+...+      ...+|+||||+|.+||++||+|+||||||||+++|+|+++|++|+|.++|+++... 
T Consensus         4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~   83 (327)
T PRK11308          4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKAD   83 (327)
T ss_pred             ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCC
Confidence            47999999999963211      25699999999999999999999999999999999999999999999999988542 


Q ss_pred             ---hHHhcCceEEEecCC--CCCCCCCHHHHHHHHHHhc-CCCchHHHHHHHHHHHHcCCC-CccccCcCcCChhHHHHH
Q psy7366         414 ---MDLVRSYIGYCPQFD--ALNDRLTPREHLEFYSRVR-NVPSVLLNTIVNESLNKFALG-HYSDREVRTLSGGNKRKL  486 (566)
Q Consensus       414 ---~~~~~~~i~~v~q~~--~l~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqrv  486 (566)
                         ...++++|+||||++  .+++.+|+.+++......+ ........+++.++++.++|. ...++++.+|||||||||
T Consensus        84 ~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv  163 (327)
T PRK11308         84 PEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRI  163 (327)
T ss_pred             HHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHH
Confidence               124567899999998  5888899999987655443 334444566789999999996 467999999999999999


Q ss_pred             HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         487 STAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       487 ~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      +|||||+.+|++||+||||++||+.++..++++|.+++++ |.|||+||||++.+..+|||+++|++|++++.|+.+++
T Consensus       164 ~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~~~~~  242 (327)
T PRK11308        164 AIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQI  242 (327)
T ss_pred             HHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence            9999999999999999999999999999999999999875 99999999999999999999999999999999988765

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.1e-47  Score=378.41  Aligned_cols=219  Identities=24%  Similarity=0.366  Sum_probs=194.5

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-------ch
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-------SM  414 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-------~~  414 (566)
                      +++++|+++.|+    ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..       ..
T Consensus         2 ~l~~~~l~~~~~----~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~   77 (242)
T PRK11124          2 SIQLNGINCFYG----AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAI   77 (242)
T ss_pred             EEEEEeeEEEEC----CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhH
Confidence            478999999996    4679999999999999999999999999999999999999999999999997631       12


Q ss_pred             HHhcCceEEEecCCCCCCCCCHHHHHHHH-HHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHc
Q psy7366         415 DLVRSYIGYCPQFDALNDRLTPREHLEFY-SRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALL  493 (566)
Q Consensus       415 ~~~~~~i~~v~q~~~l~~~~tv~e~l~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~  493 (566)
                      ...+++++|+||++.+++.+|+.||+.+. ....+.........+.++++.+++....++++.+||||||||++|||||+
T Consensus        78 ~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~  157 (242)
T PRK11124         78 RELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALM  157 (242)
T ss_pred             HHHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHh
Confidence            34567899999999999999999999752 22333333334556888999999988889999999999999999999999


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         494 GNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       494 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      .+|++|||||||+|||+.++..+.++|+++.++|+|||++|||++++..+||++++|++|++++.|+++++
T Consensus       158 ~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~  228 (242)
T PRK11124        158 MEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF  228 (242)
T ss_pred             cCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence            99999999999999999999999999999877799999999999999999999999999999999987765

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=100.00  E-value=9.6e-48  Score=387.67  Aligned_cols=217  Identities=27%  Similarity=0.415  Sum_probs=192.9

Q ss_pred             EEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc-hH----Hhc
Q psy7366         344 VVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS-MD----LVR  418 (566)
Q Consensus       344 ~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~----~~~  418 (566)
                      .++|+++.|+    ++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++... ..    ..+
T Consensus        26 ~~~~~~~~~~----~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~  101 (269)
T cd03294          26 SKEEILKKTG----QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRR  101 (269)
T ss_pred             hhhhhhhhcC----CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhc
Confidence            4668888886    56799999999999999999999999999999999999999999999999987542 11    124


Q ss_pred             CceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCE
Q psy7366         419 SYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPL  498 (566)
Q Consensus       419 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~l  498 (566)
                      ++++|+||++.+++.+|+.||+.+.....+.........+.++++.+++.+..++++.+|||||||||+|||||+.+|++
T Consensus       102 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~i  181 (269)
T cd03294         102 KKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDI  181 (269)
T ss_pred             CcEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence            67999999999998999999998865444333334455678899999999888999999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         499 IFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       499 llLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      |||||||+|||+.+++.++++|.++.++ |.|||++|||++++..+||++++|++|++++.|+++++
T Consensus       182 llLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~  248 (269)
T cd03294         182 LLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEI  248 (269)
T ss_pred             EEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence            9999999999999999999999998765 89999999999999999999999999999999987765

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.1e-47  Score=386.56  Aligned_cols=221  Identities=25%  Similarity=0.404  Sum_probs=196.4

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC---chHHh
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD---SMDLV  417 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~---~~~~~  417 (566)
                      .+|+++|+++.|+.   ++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++..   ....+
T Consensus         4 ~~l~~~~l~~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~   80 (283)
T PRK13636          4 YILKVEELNYNYSD---GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKL   80 (283)
T ss_pred             ceEEEEeEEEEeCC---CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHH
Confidence            37999999999952   3569999999999999999999999999999999999999999999999998742   23446


Q ss_pred             cCceEEEecCCC-CCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCC
Q psy7366         418 RSYIGYCPQFDA-LNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNP  496 (566)
Q Consensus       418 ~~~i~~v~q~~~-l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p  496 (566)
                      ++.+||+||++. .+...|+.||+.+.....+.+.....+++.++++.+++.+..++++.+||||||||++|||||+.+|
T Consensus        81 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p  160 (283)
T PRK13636         81 RESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEP  160 (283)
T ss_pred             HhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence            678999999973 3345799999987654444444445567889999999998899999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         497 PLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       497 ~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      ++|||||||+|||+.++..+.++|++++++ |.|||++|||++++..+|||+++|++|++++.|+++++
T Consensus       161 ~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~  229 (283)
T PRK13636        161 KVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEV  229 (283)
T ss_pred             CEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            999999999999999999999999999875 89999999999999999999999999999999998765

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.5e-47  Score=385.57  Aligned_cols=219  Identities=25%  Similarity=0.408  Sum_probs=194.2

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc--hHHhcC
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS--MDLVRS  419 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~--~~~~~~  419 (566)
                      +++++|+++.|+.   .+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++...  ....++
T Consensus         1 ml~~~~l~~~~~~---~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~   77 (274)
T PRK13644          1 MIRLENVSYSYPD---GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRK   77 (274)
T ss_pred             CEEEEEEEEEcCC---CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHh
Confidence            4789999999952   35699999999999999999999999999999999999999999999999987542  244567


Q ss_pred             ceEEEecCCC-CCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCE
Q psy7366         420 YIGYCPQFDA-LNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPL  498 (566)
Q Consensus       420 ~i~~v~q~~~-l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~l  498 (566)
                      .++|+||++. .+...|+.||+.+.....+.......+.+.++++.+++.+..++++.+|||||||||+|||||+.+|++
T Consensus        78 ~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~l  157 (274)
T PRK13644         78 LVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPEC  157 (274)
T ss_pred             heEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence            8999999975 356689999998765443444444556788999999999888999999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         499 IFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       499 llLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      |||||||+|||+.++..++++|++++++|.|||++|||++++. .|||+++|++|++++.|+++++
T Consensus       158 llLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~  222 (274)
T PRK13644        158 LIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELH-DADRIIVMDRGKIVLEGEPENV  222 (274)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHh-hCCEEEEEECCEEEEECCHHHH
Confidence            9999999999999999999999999877999999999999985 6999999999999999987765

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.7e-47  Score=385.04  Aligned_cols=220  Identities=26%  Similarity=0.435  Sum_probs=195.3

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCc
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSY  420 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~  420 (566)
                      +++++|+++.|+.   .+.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.. .....+++
T Consensus         3 ~l~~~~l~~~~~~---~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~   79 (277)
T PRK13652          3 LIETRDLCYSYSG---SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKF   79 (277)
T ss_pred             eEEEEEEEEEeCC---CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhh
Confidence            5889999999952   3469999999999999999999999999999999999999999999999998754 33455678


Q ss_pred             eEEEecCCC-CCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEE
Q psy7366         421 IGYCPQFDA-LNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLI  499 (566)
Q Consensus       421 i~~v~q~~~-l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~ll  499 (566)
                      ++|+||++. .+...|+.||+.+.....+.......+.+.++++.+++.+..++++.+||||||||++|||||+.+|++|
T Consensus        80 i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~ll  159 (277)
T PRK13652         80 VGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVL  159 (277)
T ss_pred             eEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence            999999974 3346799999987554334444444567889999999998899999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         500 FLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       500 lLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      ||||||+|||+.++..++++|++++++ |.|||++|||++++.++|||+++|++|++++.|+++++
T Consensus       160 ilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~  225 (277)
T PRK13652        160 VLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEI  225 (277)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHH
Confidence            999999999999999999999999876 89999999999999999999999999999999998775

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=1.1e-48  Score=351.93  Aligned_cols=219  Identities=23%  Similarity=0.360  Sum_probs=203.7

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC---------
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD---------  412 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~---------  412 (566)
                      .|+++|+.|.|+    ...+|++||++.++|+++.|+|.+||||||+|+||.=+.+|+.|.|.++|+.+.-         
T Consensus         6 ~l~v~dlHK~~G----~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~   81 (256)
T COG4598           6 ALEVEDLHKRYG----EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLK   81 (256)
T ss_pred             ceehhHHHhhcc----cchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCee
Confidence            589999999997    6789999999999999999999999999999999999999999999999987631         


Q ss_pred             -----chHHhcCceEEEecCCCCCCCCCHHHHHHH-HHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHH
Q psy7366         413 -----SMDLVRSYIGYCPQFDALNDRLTPREHLEF-YSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKL  486 (566)
Q Consensus       413 -----~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv  486 (566)
                           ...++|.++|+|||+++++..|||.||+.- +....+.++.+..++++.+|.++|+.+..+.+|..||||||||+
T Consensus        82 ~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~  161 (256)
T COG4598          82 PADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRV  161 (256)
T ss_pred             eCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHH
Confidence                 124577889999999999999999999854 34445778888888999999999999989999999999999999


Q ss_pred             HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         487 STAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       487 ~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      +|||||+.+|+++|+|||||+|||+-..++++.+++++++|+|++++||+|.++..++.+|++|++|.|-++|+|+++
T Consensus       162 aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~P~qv  239 (256)
T COG4598         162 AIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQV  239 (256)
T ss_pred             HHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecccCChHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999875

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5e-47  Score=383.64  Aligned_cols=220  Identities=28%  Similarity=0.422  Sum_probs=193.4

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC---chHHhc
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD---SMDLVR  418 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~---~~~~~~  418 (566)
                      +++++|+++.|+.   .+.+|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|+++..   ....++
T Consensus         1 ~l~~~~l~~~~~~---~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~   77 (275)
T PRK13639          1 ILETRDLKYSYPD---GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVR   77 (275)
T ss_pred             CEEEEEEEEEeCC---CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHH
Confidence            4789999999962   3569999999999999999999999999999999999999999999999998742   223456


Q ss_pred             CceEEEecCCC-CCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCC
Q psy7366         419 SYIGYCPQFDA-LNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPP  497 (566)
Q Consensus       419 ~~i~~v~q~~~-l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~  497 (566)
                      +.|+|+||++. .+...|+.||+.+.....+.........+.++++.+++.++.++++.+|||||+||++|||||+.+|+
T Consensus        78 ~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~  157 (275)
T PRK13639         78 KTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPE  157 (275)
T ss_pred             hheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence            78999999973 33346999999875433333333445668899999999988999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         498 LIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       498 lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      +|||||||+|||+.++..+.++|+++.++|.|||++|||++++..+||++++|++|++++.|+++++
T Consensus       158 llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  224 (275)
T PRK13639        158 IIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEV  224 (275)
T ss_pred             EEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            9999999999999999999999999987799999999999999999999999999999999998765

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.9e-47  Score=377.49  Aligned_cols=217  Identities=25%  Similarity=0.381  Sum_probs=191.6

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc-h-HHhcC
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS-M-DLVRS  419 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~-~~~~~  419 (566)
                      +++++|+++.|+    ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... . ...++
T Consensus         5 ~l~~~~l~~~~~----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~   80 (237)
T PRK11614          5 MLSFDKVSAHYG----KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMRE   80 (237)
T ss_pred             EEEEEeEEEeeC----CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHh
Confidence            689999999996    46799999999999999999999999999999999999999999999999987542 2 23467


Q ss_pred             ceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHc-CCCCccccCcCcCChhHHHHHHHHHHHcCCCCE
Q psy7366         420 YIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKF-ALGHYSDREVRTLSGGNKRKLSTAIALLGNPPL  498 (566)
Q Consensus       420 ~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~l  498 (566)
                      .++|++|++.+++.+|+.+|+.+.....  ........+.++++.+ ++.+..++++.+||||||||++|||||+.+|++
T Consensus        81 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~i  158 (237)
T PRK11614         81 AVAIVPEGRRVFSRMTVEENLAMGGFFA--ERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRL  158 (237)
T ss_pred             CEEEeccCcccCCCCcHHHHHHHhhhcc--ChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCE
Confidence            8999999999999899999998753221  1222334566777877 476667889999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         499 IFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       499 llLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      |||||||+|||+.+++.+++.|++++++|.|||++|||++++.++|||+++|++|++++.|+++++
T Consensus       159 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  224 (237)
T PRK11614        159 LLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDAL  224 (237)
T ss_pred             EEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHH
Confidence            999999999999999999999999887799999999999999999999999999999999998765

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=100.00  E-value=4.4e-47  Score=373.88  Aligned_cols=218  Identities=27%  Similarity=0.394  Sum_probs=185.9

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCch----HHh
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM----DLV  417 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~----~~~  417 (566)
                      +++++|+++.|+......++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++....    ...
T Consensus         1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~   80 (228)
T cd03257           1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR   80 (228)
T ss_pred             CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHh
Confidence            3789999999963111126999999999999999999999999999999999999999999999999875422    345


Q ss_pred             cCceEEEecCC--CCCCCCCHHHHHHHHHHhcCCCc-hHHHHH-HHHHHHHcCCC-CccccCcCcCChhHHHHHHHHHHH
Q psy7366         418 RSYIGYCPQFD--ALNDRLTPREHLEFYSRVRNVPS-VLLNTI-VNESLNKFALG-HYSDREVRTLSGGNKRKLSTAIAL  492 (566)
Q Consensus       418 ~~~i~~v~q~~--~l~~~~tv~e~l~~~~~~~~~~~-~~~~~~-~~~~l~~~~l~-~~~~~~~~~LSgGqkqrv~la~al  492 (566)
                      ++.++|++|++  .+++.+|+++|+.+......... ...... +.++++.+++. ...++++.+|||||||||+|||||
T Consensus        81 ~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral  160 (228)
T cd03257          81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARAL  160 (228)
T ss_pred             hccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHH
Confidence            67899999998  46778999999987544332211 111122 35789999995 578999999999999999999999


Q ss_pred             cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEec
Q psy7366         493 LGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLG  559 (566)
Q Consensus       493 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g  559 (566)
                      +.+|++|||||||+|||+.+++.+++.|++++++ |.|||++|||++++..+||++++|++|+++..|
T Consensus       161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g  228 (228)
T cd03257         161 ALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG  228 (228)
T ss_pred             hcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence            9999999999999999999999999999999876 899999999999999999999999999998764

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.2e-47  Score=384.67  Aligned_cols=221  Identities=26%  Similarity=0.407  Sum_probs=196.3

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcC
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRS  419 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~  419 (566)
                      .+++++|+++.|+.  ..+++|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .....++
T Consensus         4 ~~l~~~~l~~~~~~--~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~   81 (279)
T PRK13635          4 EIIRVEHISFRYPD--AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRR   81 (279)
T ss_pred             ceEEEEEEEEEeCC--CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhh
Confidence            36899999999962  13569999999999999999999999999999999999999999999999998864 2334567


Q ss_pred             ceEEEecCCC-CCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCE
Q psy7366         420 YIGYCPQFDA-LNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPL  498 (566)
Q Consensus       420 ~i~~v~q~~~-l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~l  498 (566)
                      .++|+||++. +++..|+.||+.+.....+.+.....+++.++++.++|.+..++++.+|||||||||+|||||+.+|++
T Consensus        82 ~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~l  161 (279)
T PRK13635         82 QVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDI  161 (279)
T ss_pred             heEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence            8999999974 667789999998765444444444556789999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         499 IFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       499 llLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      |||||||+|||+.++..++++|+++.++ |.|||++|||++++.. |||+++|++|++++.|+++++
T Consensus       162 llLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~-~d~i~~l~~G~i~~~g~~~~~  227 (279)
T PRK13635        162 IILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQ-ADRVIVMNKGEILEEGTPEEI  227 (279)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHH
Confidence            9999999999999999999999999876 8999999999999975 999999999999999987764

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=100.00  E-value=7.1e-47  Score=372.51  Aligned_cols=217  Identities=25%  Similarity=0.371  Sum_probs=188.2

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc-hH----
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS-MD----  415 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~----  415 (566)
                      .+|+++|+++.|+.......+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ..    
T Consensus         5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~   84 (228)
T PRK10584          5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK   84 (228)
T ss_pred             ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHH
Confidence            4799999999996311113599999999999999999999999999999999999999999999999987542 11    


Q ss_pred             HhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCC
Q psy7366         416 LVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGN  495 (566)
Q Consensus       416 ~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~  495 (566)
                      ..+++++|+||++.+++.+|+.||+.+.......+.....+++.++++.+++.+..++++.+||||||||++|||||+.+
T Consensus        85 ~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~  164 (228)
T PRK10584         85 LRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGR  164 (228)
T ss_pred             HHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence            12357999999999999999999998754433333344456788999999999888999999999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEe
Q psy7366         496 PPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCL  558 (566)
Q Consensus       496 p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~  558 (566)
                      |++|||||||+|||+.+++.+.++|++++++ |.|||++|||++++.. ||++++|++|++++.
T Consensus       165 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~-~d~i~~l~~g~i~~~  227 (228)
T PRK10584        165 PDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAAR-CDRRLRLVNGQLQEE  227 (228)
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh-CCEEEEEECCEEEec
Confidence            9999999999999999999999999998765 8999999999999855 999999999998753

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.3e-47  Score=391.27  Aligned_cols=223  Identities=21%  Similarity=0.275  Sum_probs=193.8

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCC----CCccEEEEcCccCCCc-hH-
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK----PTSGNAYVMNHSIRDS-MD-  415 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~----~~~G~i~~~g~~~~~~-~~-  415 (566)
                      +|+++|+++.|+...+...+|+||||+|.+||++||+|+||||||||+++|+|+++    |++|+|.++|+++... .. 
T Consensus         3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~   82 (326)
T PRK11022          3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE   82 (326)
T ss_pred             eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence            58999999999742222469999999999999999999999999999999999997    4899999999988542 21 


Q ss_pred             --H-hcCceEEEecCC--CCCCCCCHHHHHHHHHHhc-CCCchHHHHHHHHHHHHcCCCC---ccccCcCcCChhHHHHH
Q psy7366         416 --L-VRSYIGYCPQFD--ALNDRLTPREHLEFYSRVR-NVPSVLLNTIVNESLNKFALGH---YSDREVRTLSGGNKRKL  486 (566)
Q Consensus       416 --~-~~~~i~~v~q~~--~l~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~LSgGqkqrv  486 (566)
                        . .++.|+|+||++  .+++.+|+.+++....... +....+..+++.++++.++|.+   ..++++.+|||||+|||
T Consensus        83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv  162 (326)
T PRK11022         83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRV  162 (326)
T ss_pred             HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHH
Confidence              1 235799999997  4788899998886654432 3344455677899999999964   46899999999999999


Q ss_pred             HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         487 STAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       487 ~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      +|||||+.+|++||+||||++||+.++..++++|++++++ |.|+|+||||++++..+||||++|++|+|++.|+++++
T Consensus       163 ~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g~~~~~  241 (326)
T PRK11022        163 MIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDI  241 (326)
T ss_pred             HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence            9999999999999999999999999999999999999864 99999999999999999999999999999999998765

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.6e-47  Score=380.15  Aligned_cols=220  Identities=25%  Similarity=0.345  Sum_probs=193.7

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc--hHHhc
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS--MDLVR  418 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~--~~~~~  418 (566)
                      .+++++|+++.|+    ++++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++...  ....+
T Consensus         4 ~~l~~~~l~~~~~----~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~   79 (255)
T PRK11300          4 PLLSVSGLMMRFG----GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIAR   79 (255)
T ss_pred             ceEEEeeEEEEEC----CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHh
Confidence            3699999999996    46799999999999999999999999999999999999999999999999987542  22235


Q ss_pred             CceEEEecCCCCCCCCCHHHHHHHHHHh----------cCC-----CchHHHHHHHHHHHHcCCCCccccCcCcCChhHH
Q psy7366         419 SYIGYCPQFDALNDRLTPREHLEFYSRV----------RNV-----PSVLLNTIVNESLNKFALGHYSDREVRTLSGGNK  483 (566)
Q Consensus       419 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~----------~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqk  483 (566)
                      ..++|+||++.+++.+|+.||+.+....          ...     ........+.++++.+++.+..++++.+||||||
T Consensus        80 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~  159 (255)
T PRK11300         80 MGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQ  159 (255)
T ss_pred             cCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHH
Confidence            5699999999999999999999875321          000     0112234678889999998889999999999999


Q ss_pred             HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcc
Q psy7366         484 RKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSAT  562 (566)
Q Consensus       484 qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~  562 (566)
                      ||++|||||+.+|++|||||||+|||+.++..++++|.+++++ |.|||++||+++++..+||++++|++|++++.|+++
T Consensus       160 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~  239 (255)
T PRK11300        160 RRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPE  239 (255)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHH
Confidence            9999999999999999999999999999999999999999876 899999999999999999999999999999999877


Q ss_pred             cc
Q psy7366         563 HL  564 (566)
Q Consensus       563 ~l  564 (566)
                      ++
T Consensus       240 ~~  241 (255)
T PRK11300        240 EI  241 (255)
T ss_pred             HH
Confidence            64

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.5e-47  Score=380.14  Aligned_cols=219  Identities=25%  Similarity=0.433  Sum_probs=193.8

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCc
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSY  420 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~  420 (566)
                      +++++|++++|+    ++.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. .....++.
T Consensus         2 ~l~~~~l~~~~~----~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~   77 (255)
T PRK11231          2 TLRTENLTVGYG----TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARR   77 (255)
T ss_pred             EEEEEeEEEEEC----CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhh
Confidence            588999999996    4679999999999999999999999999999999999999999999999987643 23344567


Q ss_pred             eEEEecCCCCCCCCCHHHHHHHHHH----hcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCC
Q psy7366         421 IGYCPQFDALNDRLTPREHLEFYSR----VRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNP  496 (566)
Q Consensus       421 i~~v~q~~~l~~~~tv~e~l~~~~~----~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p  496 (566)
                      ++|+||++.+++.+|+.||+.+...    ..+.........+.++++.+++.+..++++.+|||||+|||+|||||+.+|
T Consensus        78 i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p  157 (255)
T PRK11231         78 LALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDT  157 (255)
T ss_pred             eEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCC
Confidence            9999999988888999999987421    111112233456788999999988889999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         497 PLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       497 ~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      ++|||||||+|||+.++..+.+.|++++++|.|||++|||++++.++||++++|++|+++..|+++++
T Consensus       158 ~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  225 (255)
T PRK11231        158 PVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEV  225 (255)
T ss_pred             CEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHh
Confidence            99999999999999999999999999877799999999999999999999999999999999987765

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.5e-47  Score=382.18  Aligned_cols=220  Identities=23%  Similarity=0.343  Sum_probs=194.5

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcC
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRS  419 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~  419 (566)
                      .+|+++|+++.|+    ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ....+++
T Consensus        10 ~~l~i~~l~~~~~----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~   85 (265)
T PRK10575         10 TTFALRNVSFRVP----GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFAR   85 (265)
T ss_pred             ceEEEeeEEEEEC----CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhh
Confidence            4799999999996    4579999999999999999999999999999999999999999999999988743 2334567


Q ss_pred             ceEEEecCCCCCCCCCHHHHHHHHHH-hcC---CCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCC
Q psy7366         420 YIGYCPQFDALNDRLTPREHLEFYSR-VRN---VPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGN  495 (566)
Q Consensus       420 ~i~~v~q~~~l~~~~tv~e~l~~~~~-~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~  495 (566)
                      .++|+||++.+++.+|+.||+.+... ...   .......+.+.++++.+++.+..++++.+|||||||||+|||||+.+
T Consensus        86 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~  165 (265)
T PRK10575         86 KVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQD  165 (265)
T ss_pred             heEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence            89999999888888999999986421 111   11223345678899999998888999999999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         496 PPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       496 p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      |++|||||||+|||+.+++.++++|.+++++ |.|||++||+++++..+||++++|++|+++..|+++++
T Consensus       166 p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~  235 (265)
T PRK10575        166 SRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEL  235 (265)
T ss_pred             CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHh
Confidence            9999999999999999999999999999765 89999999999999999999999999999999987765

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8.2e-47  Score=383.38  Aligned_cols=221  Identities=23%  Similarity=0.388  Sum_probs=192.3

Q ss_pred             EEEeeeEEEeCCcCC-CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-----chHH
Q psy7366         343 LVVKRLFKIYANSKG-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-----SMDL  416 (566)
Q Consensus       343 l~~~~l~~~y~~~~~-~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-----~~~~  416 (566)
                      |+++|+++.|+.... .+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++..     ....
T Consensus         3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~   82 (280)
T PRK13649          3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ   82 (280)
T ss_pred             EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence            789999999963110 1469999999999999999999999999999999999999999999999998753     1234


Q ss_pred             hcCceEEEecCC--CCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCC-CccccCcCcCChhHHHHHHHHHHHc
Q psy7366         417 VRSYIGYCPQFD--ALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALG-HYSDREVRTLSGGNKRKLSTAIALL  493 (566)
Q Consensus       417 ~~~~i~~v~q~~--~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqrv~la~al~  493 (566)
                      +++.|+|+||++  .+++ .|+.||+.+.....+.......+.+.++++.+++. ...++++.+||||||||++|||||+
T Consensus        83 ~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~  161 (280)
T PRK13649         83 IRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILA  161 (280)
T ss_pred             HHhheEEEeeChhhhhcc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence            567899999997  4555 69999998765433333444455678899999997 4679999999999999999999999


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         494 GNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       494 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      .+|++|||||||+|||+.+++.+.+.|++++++|+|||++|||++++..+||++++|++|++++.|+++++
T Consensus       162 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  232 (280)
T PRK13649        162 MEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI  232 (280)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            99999999999999999999999999999977789999999999999999999999999999999987765

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=100.00  E-value=8e-47  Score=377.61  Aligned_cols=208  Identities=22%  Similarity=0.325  Sum_probs=187.7

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCc
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSY  420 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~  420 (566)
                      ..|+++|+++.|+    ++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++.    ..++.
T Consensus        11 ~~l~i~~l~~~~~----~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~----~~~~~   82 (257)
T PRK11247         11 TPLLLNAVSKRYG----ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA----EARED   82 (257)
T ss_pred             CcEEEEEEEEEEC----CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH----HhhCc
Confidence            4699999999996    467999999999999999999999999999999999999999999999987652    34567


Q ss_pred             eEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEE
Q psy7366         421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIF  500 (566)
Q Consensus       421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lll  500 (566)
                      ++|++|++.+++.+|+.||+.+...     . .....+.++++.+++.+..++++.+||||||||++|||||+.+|++||
T Consensus        83 i~~v~q~~~l~~~~tv~enl~~~~~-----~-~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lll  156 (257)
T PRK11247         83 TRLMFQDARLLPWKKVIDNVGLGLK-----G-QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLL  156 (257)
T ss_pred             eEEEecCccCCCCCcHHHHHHhccc-----c-hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            9999999999888999999986421     1 123567889999999988899999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcc
Q psy7366         501 LDEPTSGMDPGARRFLWTCIERAVS-EGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSAT  562 (566)
Q Consensus       501 LDEPt~gLD~~~~~~l~~~l~~~~~-~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~  562 (566)
                      |||||+|||+.++..+.++|.++.+ .|.|||++|||++++..+||++++|++|+++++++.+
T Consensus       157 LDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~  219 (257)
T PRK11247        157 LDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD  219 (257)
T ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence            9999999999999999999999865 4899999999999999999999999999999988654

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1e-46  Score=378.18  Aligned_cols=218  Identities=21%  Similarity=0.329  Sum_probs=191.7

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCC-----CccEEEEcCccCCCc--
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIRDS--  413 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~-----~~G~i~~~g~~~~~~--  413 (566)
                      ++++++|+++.|+    ++.+|+|+||+|++||++||+||||||||||+++|+|+++|     ++|+|.++|+++...  
T Consensus        11 ~~l~~~~l~~~~~----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~   86 (258)
T PRK14268         11 PQIKVENLNLWYG----EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDV   86 (258)
T ss_pred             eeEEEeeeEEEeC----CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccc
Confidence            4799999999996    45799999999999999999999999999999999999985     799999999887431  


Q ss_pred             -hHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCC----CccccCcCcCChhHHHHHHH
Q psy7366         414 -MDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALG----HYSDREVRTLSGGNKRKLST  488 (566)
Q Consensus       414 -~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqrv~l  488 (566)
                       ....++.++|+||++.+++ +|+.||+.+.....+.+.....+.+.++++.+++.    +..++++.+|||||||||+|
T Consensus        87 ~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~l  165 (258)
T PRK14268         87 DVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCI  165 (258)
T ss_pred             hHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHH
Confidence             2345678999999998887 89999998765444443333445678899999883    45688999999999999999


Q ss_pred             HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         489 AIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       489 a~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      ||||+.+|++|||||||+|||+.++..++++|+++++ |.|||++|||++++..+|||+++|++|++++.|+++++
T Consensus       166 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  240 (258)
T PRK14268        166 ARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQI  240 (258)
T ss_pred             HHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            9999999999999999999999999999999999864 79999999999999999999999999999999988765

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=100.00  E-value=5.6e-47  Score=373.69  Aligned_cols=215  Identities=30%  Similarity=0.406  Sum_probs=189.4

Q ss_pred             EEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc-h-HHhcCc
Q psy7366         343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS-M-DLVRSY  420 (566)
Q Consensus       343 l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~-~~~~~~  420 (566)
                      |+++|+++.|+    ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... . ...++.
T Consensus         1 l~~~~l~~~~~----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~   76 (230)
T TIGR03410         1 LEVSNLNVYYG----QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAG   76 (230)
T ss_pred             CEEEeEEEEeC----CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhC
Confidence            46899999996    45799999999999999999999999999999999999999999999999887542 2 223567


Q ss_pred             eEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcC-CCCccccCcCcCChhHHHHHHHHHHHcCCCCEE
Q psy7366         421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFA-LGHYSDREVRTLSGGNKRKLSTAIALLGNPPLI  499 (566)
Q Consensus       421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~LSgGqkqrv~la~al~~~p~ll  499 (566)
                      ++|+||++.+++.+|+.+|+.+........   ..+.+.++++.++ +....++++.+||||||||++|||||+.+|++|
T Consensus        77 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~---~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~il  153 (230)
T TIGR03410        77 IAYVPQGREIFPRLTVEENLLTGLAALPRR---SRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLL  153 (230)
T ss_pred             eEEeccCCcccCCCcHHHHHHHHHHhcCcc---hHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            999999999999999999998765433221   2234567777776 566789999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         500 FLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       500 lLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      ||||||+|||+.++..++++|.+++++ |.|||++||+++++..+||++++|++|++++.|+.+++
T Consensus       154 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~  219 (230)
T TIGR03410       154 LLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL  219 (230)
T ss_pred             EecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence            999999999999999999999998875 89999999999999999999999999999999998776

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=100.00  E-value=8.4e-47  Score=377.56  Aligned_cols=218  Identities=22%  Similarity=0.302  Sum_probs=193.3

Q ss_pred             EEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc---------
Q psy7366         343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS---------  413 (566)
Q Consensus       343 l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~---------  413 (566)
                      ++++|+++.|+    ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...         
T Consensus         1 i~~~~l~~~~~----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~   76 (252)
T TIGR03005         1 VRFSDVTKRFG----ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVP   76 (252)
T ss_pred             CEEEEEEEEeC----CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccc
Confidence            46899999996    45799999999999999999999999999999999999999999999999877421         


Q ss_pred             -----hHHhcCceEEEecCCCCCCCCCHHHHHHHHHH-hcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHH
Q psy7366         414 -----MDLVRSYIGYCPQFDALNDRLTPREHLEFYSR-VRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLS  487 (566)
Q Consensus       414 -----~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~  487 (566)
                           ....++.++|++|++.+++..|+.||+.+... ..+.........+.++++.+++.+..++.+.+|||||+||++
T Consensus        77 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~  156 (252)
T TIGR03005        77 ADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVA  156 (252)
T ss_pred             cchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHH
Confidence                 12456789999999999999999999987432 123333344556788999999988889999999999999999


Q ss_pred             HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         488 TAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       488 la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      |||||+.+|++|||||||+|||+.++..+.++|+++.++ |.|||++|||++++..+|||+++|++|++++.|+++++
T Consensus       157 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  234 (252)
T TIGR03005       157 IARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEI  234 (252)
T ss_pred             HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence            999999999999999999999999999999999998765 89999999999999999999999999999999987765

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=100.00  E-value=6.1e-47  Score=368.54  Aligned_cols=210  Identities=20%  Similarity=0.346  Sum_probs=183.5

Q ss_pred             EEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceE
Q psy7366         343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIG  422 (566)
Q Consensus       343 l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~  422 (566)
                      ++++|+++.|+    ++.  .|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++..... .++.++
T Consensus         1 i~~~~l~~~~~----~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~-~~~~i~   73 (211)
T cd03298           1 VRLDKIRFSYG----EQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP-ADRPVS   73 (211)
T ss_pred             CEEEeEEEEeC----CEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH-hHccEE
Confidence            46899999996    232  39999999999999999999999999999999999999999999998754322 246799


Q ss_pred             EEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEe
Q psy7366         423 YCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLD  502 (566)
Q Consensus       423 ~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLD  502 (566)
                      |++|++.+++.+|+.||+.+............++.+.++++.+++.+..++++.+||||||||++|||||+.+|++||||
T Consensus        74 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllD  153 (211)
T cd03298          74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLD  153 (211)
T ss_pred             EEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            99999999999999999986532111112233556889999999998889999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEec
Q psy7366         503 EPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLG  559 (566)
Q Consensus       503 EPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g  559 (566)
                      |||+|||+.++..++++|++++++ |.|||++|||++++..+|||+++|++|++++.|
T Consensus       154 EP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~  211 (211)
T cd03298         154 EPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG  211 (211)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence            999999999999999999998764 899999999999999999999999999998754

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=100.00  E-value=1.1e-46  Score=389.19  Aligned_cols=224  Identities=24%  Similarity=0.345  Sum_probs=195.6

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCC---ccEEEEcCccCCCc-hH-
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT---SGNAYVMNHSIRDS-MD-  415 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~-~~-  415 (566)
                      .+|+++|+++.|....+...+|+|+||+|++||++||+|+||||||||+++|+|+++|+   +|+|.++|+++... .. 
T Consensus        11 ~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~   90 (330)
T PRK09473         11 ALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKE   90 (330)
T ss_pred             ceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHH
Confidence            47999999999964333457999999999999999999999999999999999999996   99999999998542 22 


Q ss_pred             --Hh-cCceEEEecCC--CCCCCCCHHHHHHHHHHhc-CCCchHHHHHHHHHHHHcCCCC---ccccCcCcCChhHHHHH
Q psy7366         416 --LV-RSYIGYCPQFD--ALNDRLTPREHLEFYSRVR-NVPSVLLNTIVNESLNKFALGH---YSDREVRTLSGGNKRKL  486 (566)
Q Consensus       416 --~~-~~~i~~v~q~~--~l~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~LSgGqkqrv  486 (566)
                        .+ ++.|+||||++  .+++.+|+.+++......+ +....+..+++.++++.++|.+   ..++++.+|||||+|||
T Consensus        91 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv  170 (330)
T PRK09473         91 LNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRV  170 (330)
T ss_pred             HHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHH
Confidence              22 35799999998  5889999999987655433 2344445567889999999964   35789999999999999


Q ss_pred             HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         487 STAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       487 ~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      +|||||+.+|++||+||||++||+.++..++++|++++++ |.|+|+||||++.+..+|||+++|++|+|++.|+++++
T Consensus       171 ~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~~~i  249 (330)
T PRK09473        171 MIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDV  249 (330)
T ss_pred             HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence            9999999999999999999999999999999999999876 99999999999999999999999999999999998776

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=100.00  E-value=2.9e-47  Score=371.31  Aligned_cols=206  Identities=28%  Similarity=0.485  Sum_probs=179.7

Q ss_pred             EeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEE
Q psy7366         345 VKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYC  424 (566)
Q Consensus       345 ~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v  424 (566)
                      ++|+++.|+    ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.    ..+++++|+
T Consensus         2 ~~~l~~~~~----~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~----~~~~~i~~v   73 (213)
T cd03235           2 VEDLTVSYG----GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE----KERKRIGYV   73 (213)
T ss_pred             cccceeEEC----CEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH----HHHhheEEe
Confidence            678999996    456999999999999999999999999999999999999999999999998753    345679999


Q ss_pred             ecCCCCC--CCCCHHHHHHHHHHhcC----CCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCE
Q psy7366         425 PQFDALN--DRLTPREHLEFYSRVRN----VPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPL  498 (566)
Q Consensus       425 ~q~~~l~--~~~tv~e~l~~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~l  498 (566)
                      ||++.++  ..+|+.||+.+......    .......+++.++++.+++.+..++++.+||||||||++|||||+.+|++
T Consensus        74 ~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l  153 (213)
T cd03235          74 PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDL  153 (213)
T ss_pred             ccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence            9998763  34799999987532111    12223455688999999998888999999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEec
Q psy7366         499 IFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLG  559 (566)
Q Consensus       499 llLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g  559 (566)
                      |||||||+|||+.++..+.+.|++++++|.|||++|||++++.++||++++|++| +++.|
T Consensus       154 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g  213 (213)
T cd03235         154 LLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG  213 (213)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence            9999999999999999999999998777899999999999999999999999886 55543

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=100.00  E-value=7.2e-47  Score=374.40  Aligned_cols=222  Identities=23%  Similarity=0.353  Sum_probs=197.3

Q ss_pred             EEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCC-C----CccEEEEcCccCCC-chH-
Q psy7366         343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-P----TSGNAYVMNHSIRD-SMD-  415 (566)
Q Consensus       343 l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~-~----~~G~i~~~g~~~~~-~~~-  415 (566)
                      |+++||+..|....+...+++||||+|.+||++||+|.|||||||+.+.|+|+++ |    .+|+|.++|+++.. +.+ 
T Consensus         2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~   81 (316)
T COG0444           2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE   81 (316)
T ss_pred             ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence            7899999999765555679999999999999999999999999999999999998 3    57999999998754 222 


Q ss_pred             --Hh-cCceEEEecCC--CCCCCCCHHHHHHHHHHhcC-C-CchHHHHHHHHHHHHcCCCC---ccccCcCcCChhHHHH
Q psy7366         416 --LV-RSYIGYCPQFD--ALNDRLTPREHLEFYSRVRN-V-PSVLLNTIVNESLNKFALGH---YSDREVRTLSGGNKRK  485 (566)
Q Consensus       416 --~~-~~~i~~v~q~~--~l~~~~tv~e~l~~~~~~~~-~-~~~~~~~~~~~~l~~~~l~~---~~~~~~~~LSgGqkqr  485 (566)
                        .+ .+.|+|+||+|  .|.|-+||.+.+.-....+. . .+++..+++.++|+.+++.+   .++.+|++|||||+||
T Consensus        82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQR  161 (316)
T COG0444          82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQR  161 (316)
T ss_pred             HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHH
Confidence              22 36899999997  58899999998877665443 3 35566788999999999974   5799999999999999


Q ss_pred             HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         486 LSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       486 v~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      |+||.||+.+|++||.||||++||...+.+|+++|++++++ |.++|+||||+..+.++||||+||+.|+|++.|+.+++
T Consensus       162 V~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~~~~i  241 (316)
T COG0444         162 VMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEI  241 (316)
T ss_pred             HHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCCHHHH
Confidence            99999999999999999999999999999999999999875 99999999999999999999999999999999998775

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.1e-47  Score=380.29  Aligned_cols=221  Identities=20%  Similarity=0.295  Sum_probs=194.8

Q ss_pred             CCeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhc
Q psy7366         340 GDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVR  418 (566)
Q Consensus       340 ~~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~  418 (566)
                      ..+|+++|++++|+    ++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .....+
T Consensus         5 ~~~l~i~~l~~~~~----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~   80 (265)
T PRK10253          5 VARLRGEQLTLGYG----KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVA   80 (265)
T ss_pred             ccEEEEEEEEEEEC----CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHh
Confidence            34799999999997    4579999999999999999999999999999999999999999999999998754 233445


Q ss_pred             CceEEEecCCCCCCCCCHHHHHHHHHH-hc---CCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcC
Q psy7366         419 SYIGYCPQFDALNDRLTPREHLEFYSR-VR---NVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLG  494 (566)
Q Consensus       419 ~~i~~v~q~~~l~~~~tv~e~l~~~~~-~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~  494 (566)
                      ..++|+||++.+++.+|+.||+.+... ..   ..........+.++++.+++.+..++++.+||||||||++|||||+.
T Consensus        81 ~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~  160 (265)
T PRK10253         81 RRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQ  160 (265)
T ss_pred             hheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhc
Confidence            679999999998888999999976421 10   01122334567889999999888899999999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         495 NPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       495 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      +|++|||||||+|||+.++..+.++|.++.++ |.|||++|||++++..+||++++|++|++++.|+++++
T Consensus       161 ~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  231 (265)
T PRK10253        161 ETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEI  231 (265)
T ss_pred             CCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            99999999999999999999999999999765 89999999999999999999999999999999988765

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=100.00  E-value=9.9e-47  Score=377.88  Aligned_cols=218  Identities=24%  Similarity=0.380  Sum_probs=193.1

Q ss_pred             EEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCce
Q psy7366         343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSYI  421 (566)
Q Consensus       343 l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~i  421 (566)
                      |+++|+++.|+    ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .....++.+
T Consensus         2 l~~~~l~~~~~----~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i   77 (256)
T TIGR03873         2 LRLSRVSWSAG----GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRV   77 (256)
T ss_pred             ceEEeEEEEEC----CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhhe
Confidence            67899999996    4679999999999999999999999999999999999999999999999998754 233445679


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHH-h---cCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCC
Q psy7366         422 GYCPQFDALNDRLTPREHLEFYSR-V---RNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPP  497 (566)
Q Consensus       422 ~~v~q~~~l~~~~tv~e~l~~~~~-~---~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~  497 (566)
                      +|+||++.+++.+|+.||+.+... .   .........+++.++++.+++.+..++++.+||||||||++|||||+.+|+
T Consensus        78 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~  157 (256)
T TIGR03873        78 ALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPK  157 (256)
T ss_pred             EEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence            999999887788999999987421 1   111222334567889999999888899999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         498 LIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       498 lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      ++||||||+|||+.++..+.++|++++++|.|||++|||++++..+||++++|++|++++.|+++++
T Consensus       158 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  224 (256)
T TIGR03873       158 LLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREV  224 (256)
T ss_pred             EEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHh
Confidence            9999999999999999999999999987789999999999999999999999999999999988765

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.6e-46  Score=375.23  Aligned_cols=218  Identities=19%  Similarity=0.284  Sum_probs=192.0

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCC-----CccEEEEcCccCCC-chH
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIRD-SMD  415 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~-----~~G~i~~~g~~~~~-~~~  415 (566)
                      +++++|+++.|+    ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|.++.. ...
T Consensus         3 ~l~~~~l~~~~~----~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~   78 (250)
T PRK14247          3 KIEIRDLKVSFG----QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVI   78 (250)
T ss_pred             eEEEEeeEEEEC----CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHH
Confidence            589999999996    45799999999999999999999999999999999999974     69999999998754 334


Q ss_pred             HhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCC--CchHHHHHHHHHHHHcCCCC----ccccCcCcCChhHHHHHHHH
Q psy7366         416 LVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNV--PSVLLNTIVNESLNKFALGH----YSDREVRTLSGGNKRKLSTA  489 (566)
Q Consensus       416 ~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~----~~~~~~~~LSgGqkqrv~la  489 (566)
                      .+++.++|+||++.+++.+|+.||+.+.......  ......+.+.++++.+++.+    ..++++.+|||||||||+||
T Consensus        79 ~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~la  158 (250)
T PRK14247         79 ELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIA  158 (250)
T ss_pred             HHhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHH
Confidence            5567899999999888889999999876443222  22334556788999999853    56889999999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         490 IALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       490 ~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      |||+.+|++|||||||+|||+.++..+.+.|+++.+ |.|||++|||++++..+||++++|++|++++.|+++++
T Consensus       159 ral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  232 (250)
T PRK14247        159 RALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREV  232 (250)
T ss_pred             HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHH
Confidence            999999999999999999999999999999999854 89999999999999999999999999999999988765

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.1e-46  Score=374.26  Aligned_cols=214  Identities=26%  Similarity=0.387  Sum_probs=190.0

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCc
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSY  420 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~  420 (566)
                      .++++|+++.|+    ++.+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++.. .....++.
T Consensus         3 ~l~~~~l~~~~~----~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~   78 (241)
T PRK14250          3 EIEFKEVSYSSF----GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRK   78 (241)
T ss_pred             eEEEEeEEEEeC----CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhc
Confidence            488999999996    4579999999999999999999999999999999999999999999999998753 23345678


Q ss_pred             eEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCC-CccccCcCcCChhHHHHHHHHHHHcCCCCEE
Q psy7366         421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALG-HYSDREVRTLSGGNKRKLSTAIALLGNPPLI  499 (566)
Q Consensus       421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqrv~la~al~~~p~ll  499 (566)
                      ++|+||++.+++ .|+.||+.+......    ....++.++++.+++. +..++++.+||||||||++|||||+.+|++|
T Consensus        79 i~~~~q~~~~~~-~tv~e~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~ll  153 (241)
T PRK14250         79 IGMVFQQPHLFE-GTVKDNIEYGPMLKG----EKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVL  153 (241)
T ss_pred             EEEEecCchhch-hhHHHHHhcchhhcC----cHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence            999999998886 699999876433221    1234577899999996 5778999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         500 FLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       500 lLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      ||||||+|||+.+++.+.+.|++++++ |.|||++|||++++..+||++++|++|+++..|+++++
T Consensus       154 llDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  219 (241)
T PRK14250        154 LLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDF  219 (241)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence            999999999999999999999998774 99999999999999999999999999999999987765

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=100.00  E-value=1.6e-46  Score=378.14  Aligned_cols=224  Identities=25%  Similarity=0.385  Sum_probs=194.4

Q ss_pred             eEEEeeeEEEeCCc-----CCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc-h-
Q psy7366         342 VLVVKRLFKIYANS-----KGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS-M-  414 (566)
Q Consensus       342 ~l~~~~l~~~y~~~-----~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~-  414 (566)
                      +|+++|+++.|+..     .+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... . 
T Consensus         2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~   81 (265)
T TIGR02769         2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK   81 (265)
T ss_pred             eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence            58899999999521     0135799999999999999999999999999999999999999999999999987542 1 


Q ss_pred             --HHhcCceEEEecCC--CCCCCCCHHHHHHHHHHh-cCCCchHHHHHHHHHHHHcCCC-CccccCcCcCChhHHHHHHH
Q psy7366         415 --DLVRSYIGYCPQFD--ALNDRLTPREHLEFYSRV-RNVPSVLLNTIVNESLNKFALG-HYSDREVRTLSGGNKRKLST  488 (566)
Q Consensus       415 --~~~~~~i~~v~q~~--~l~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqrv~l  488 (566)
                        ...++.++|+||++  .+++.+|+.||+.+.... ..........++.++++.+++. ...++++.+|||||||||+|
T Consensus        82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~l  161 (265)
T TIGR02769        82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINI  161 (265)
T ss_pred             HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHH
Confidence              22467899999997  466789999999765432 2233333456788999999996 67899999999999999999


Q ss_pred             HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         489 AIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       489 a~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      ||||+.+|++|||||||+|||+.++..++++|++++++ |.|||++|||++++..+||++++|++|++++.|+++++.
T Consensus       162 aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  239 (265)
T TIGR02769       162 ARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLL  239 (265)
T ss_pred             HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCHHHHc
Confidence            99999999999999999999999999999999998875 899999999999999999999999999999999987763

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=100.00  E-value=1.7e-46  Score=378.33  Aligned_cols=224  Identities=25%  Similarity=0.351  Sum_probs=193.6

Q ss_pred             CeEEEeeeEEEeCCcC-----CCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-ch
Q psy7366         341 DVLVVKRLFKIYANSK-----GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SM  414 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~-----~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~  414 (566)
                      .+|+++|+++.|+...     +.+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..
T Consensus         3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~   82 (267)
T PRK15112          3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDY   82 (267)
T ss_pred             ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCch
Confidence            3689999999996211     13569999999999999999999999999999999999999999999999998753 22


Q ss_pred             HHhcCceEEEecCCC--CCCCCCHHHHHHHHHHhc-CCCchHHHHHHHHHHHHcCCC-CccccCcCcCChhHHHHHHHHH
Q psy7366         415 DLVRSYIGYCPQFDA--LNDRLTPREHLEFYSRVR-NVPSVLLNTIVNESLNKFALG-HYSDREVRTLSGGNKRKLSTAI  490 (566)
Q Consensus       415 ~~~~~~i~~v~q~~~--l~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqrv~la~  490 (566)
                      ...++.++|+||++.  +++.+|+.+++.+..... ........+.+.++++.+++. ...++++.+|||||||||+|||
T Consensus        83 ~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lar  162 (267)
T PRK15112         83 SYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLAR  162 (267)
T ss_pred             hhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHH
Confidence            334567999999974  667889999988755432 223333445678999999994 6678899999999999999999


Q ss_pred             HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         491 ALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       491 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      ||+.+|++|||||||+|||+.+++.+.++|.++.++ |.|||++||+++++..+||++++|++|+++..|+++++
T Consensus       163 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  237 (267)
T PRK15112        163 ALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADV  237 (267)
T ss_pred             HHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHH
Confidence            999999999999999999999999999999999765 89999999999999999999999999999999887765

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.8e-46  Score=375.43  Aligned_cols=218  Identities=20%  Similarity=0.313  Sum_probs=191.3

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCC-----CccEEEEcCccCC--C-c
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIR--D-S  413 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~-----~~G~i~~~g~~~~--~-~  413 (566)
                      +|+++|+++.|+    ++++|+|+||+|.+||+++|+||||||||||+++|+|+++|     ++|+|+++|+++.  . .
T Consensus         4 ~l~~~~l~~~~~----~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~   79 (253)
T PRK14267          4 AIETVNLRVYYG----SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVD   79 (253)
T ss_pred             eEEEEeEEEEeC----CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccC
Confidence            689999999996    45799999999999999999999999999999999999987     4999999999875  2 2


Q ss_pred             hHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCC--CchHHHHHHHHHHHHcCCC----CccccCcCcCChhHHHHHH
Q psy7366         414 MDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNV--PSVLLNTIVNESLNKFALG----HYSDREVRTLSGGNKRKLS  487 (566)
Q Consensus       414 ~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~--~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqrv~  487 (566)
                      ...++++++|+||++.+++.+|+.||+.+.......  +.......+.++++.+++.    ...++++.+||||||||++
T Consensus        80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~  159 (253)
T PRK14267         80 PIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLV  159 (253)
T ss_pred             hHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHH
Confidence            334567899999999999999999999876543322  2233345678889999874    3468899999999999999


Q ss_pred             HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         488 TAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       488 la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      |||||+.+|++|||||||+|||+.++..+.++|+++.+ ++|||++|||++++..+||++++|++|++++.|+++++
T Consensus       160 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  235 (253)
T PRK14267        160 IARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKV  235 (253)
T ss_pred             HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence            99999999999999999999999999999999999865 69999999999999999999999999999999988765

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.2e-46  Score=374.76  Aligned_cols=219  Identities=23%  Similarity=0.315  Sum_probs=190.5

Q ss_pred             CCeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCC-----CCccEEEEcCccCCC--
Q psy7366         340 GDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIRD--  412 (566)
Q Consensus       340 ~~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~--  412 (566)
                      .++|+++|+++.|+    ++.+|+++||+|++||+++|+||||||||||+++|+|+++     |++|+|.++|+++..  
T Consensus         4 ~~~l~~~~l~~~~~----~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~   79 (253)
T PRK14242          4 PPKMEARGLSFFYG----DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPH   79 (253)
T ss_pred             CcEEEEeeeEEEEC----CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccc
Confidence            34799999999996    4579999999999999999999999999999999999974     589999999998753  


Q ss_pred             -chHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCC-CchHHHHHHHHHHHHcCCCC----ccccCcCcCChhHHHHH
Q psy7366         413 -SMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNV-PSVLLNTIVNESLNKFALGH----YSDREVRTLSGGNKRKL  486 (566)
Q Consensus       413 -~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~----~~~~~~~~LSgGqkqrv  486 (566)
                       .....++.++|+||++.+++ .|+.||+.+.....+. ......+.+.++++.+++.+    ..++++.+|||||||||
T Consensus        80 ~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv  158 (253)
T PRK14242         80 VDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRL  158 (253)
T ss_pred             cCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHH
Confidence             22345678999999998887 5999999876543332 22234566788899999843    46888999999999999


Q ss_pred             HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         487 STAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       487 ~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      +|||||+.+|++|||||||+|||+.++..+.++|+++.+ +.|||++|||++++..+||++++|++|++++.|+++++
T Consensus       159 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~  235 (253)
T PRK14242        159 CIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQI  235 (253)
T ss_pred             HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            999999999999999999999999999999999999854 79999999999999999999999999999999988765

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=100.00  E-value=1.6e-46  Score=373.56  Aligned_cols=219  Identities=22%  Similarity=0.301  Sum_probs=189.3

Q ss_pred             EEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCC--CCCccEEEEcCccCCCc-hHH-hc
Q psy7366         343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI--KPTSGNAYVMNHSIRDS-MDL-VR  418 (566)
Q Consensus       343 l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~--~~~~G~i~~~g~~~~~~-~~~-~~  418 (566)
                      |+++|+++.|+    ++.+|+|+||+|++||+++|+||||||||||+|+|+|++  +|++|+|.++|+++... ... .+
T Consensus         1 l~~~~l~~~~~----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~   76 (243)
T TIGR01978         1 LKIKDLHVSVE----DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERAR   76 (243)
T ss_pred             CeEeeEEEEEC----CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhc
Confidence            46899999996    467999999999999999999999999999999999995  79999999999987542 222 34


Q ss_pred             CceEEEecCCCCCCCCCHHHHHHHHHHhcC-------CCchHHHHHHHHHHHHcCCC-CccccCcC-cCChhHHHHHHHH
Q psy7366         419 SYIGYCPQFDALNDRLTPREHLEFYSRVRN-------VPSVLLNTIVNESLNKFALG-HYSDREVR-TLSGGNKRKLSTA  489 (566)
Q Consensus       419 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~-------~~~~~~~~~~~~~l~~~~l~-~~~~~~~~-~LSgGqkqrv~la  489 (566)
                      ..++|+||++.+++.+|+.||+.+......       .......+.+.++++.+++. ...++++. +|||||||||+||
T Consensus        77 ~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la  156 (243)
T TIGR01978        77 AGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEIL  156 (243)
T ss_pred             cceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHH
Confidence            569999999999999999999977543211       11222345678899999997 46788887 5999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhh-CCEEEEEECCEEEEecCccccc
Q psy7366         490 IALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEAL-CTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       490 ~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~-~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      |||+.+|++|||||||+|||+.+++.++++|++++++|.|||++|||++++..+ ||++++|++|++++.|++++++
T Consensus       157 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  233 (243)
T TIGR01978       157 QMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVELAK  233 (243)
T ss_pred             HHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHHHhc
Confidence            999999999999999999999999999999999987789999999999999998 8999999999999999887543

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.5e-46  Score=379.42  Aligned_cols=221  Identities=28%  Similarity=0.451  Sum_probs=194.7

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcC
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRS  419 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~  419 (566)
                      .+++++|+++.|+.  +.+++|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ....+++
T Consensus         6 ~~l~~~nl~~~~~~--~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~   83 (271)
T PRK13632          6 VMIKVENVSFSYPN--SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRK   83 (271)
T ss_pred             eEEEEEeEEEEcCC--CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhc
Confidence            37999999999952  14579999999999999999999999999999999999999999999999998854 2345577


Q ss_pred             ceEEEecCCC-CCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCE
Q psy7366         420 YIGYCPQFDA-LNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPL  498 (566)
Q Consensus       420 ~i~~v~q~~~-l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~l  498 (566)
                      +++|+||++. .++.+|+.||+.+...............+.++++.+++.+..++++.+||||||||++|||||+.+|++
T Consensus        84 ~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l  163 (271)
T PRK13632         84 KIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEI  163 (271)
T ss_pred             ceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence            8999999974 667789999998765433333334455688999999999889999999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         499 IFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       499 llLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      |||||||+|||+.+++.++++|++++++ +.|||++||+++++. .||++++|++|+++..|+++++
T Consensus       164 llLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~  229 (271)
T PRK13632        164 IIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSEGKLIAQGKPKEI  229 (271)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHh-hCCEEEEEECCEEEEecCHHHH
Confidence            9999999999999999999999998776 599999999999986 7999999999999999987664

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.9e-46  Score=380.44  Aligned_cols=223  Identities=27%  Similarity=0.405  Sum_probs=195.3

Q ss_pred             CeEEEeeeEEEeCCcC--CCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc--hHH
Q psy7366         341 DVLVVKRLFKIYANSK--GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS--MDL  416 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~--~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~--~~~  416 (566)
                      ++++++|+++.|+...  +.+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...  ...
T Consensus         3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~   82 (280)
T PRK13633          3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWD   82 (280)
T ss_pred             ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHH
Confidence            4799999999996321  135699999999999999999999999999999999999999999999999987542  244


Q ss_pred             hcCceEEEecCCC-CCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCC
Q psy7366         417 VRSYIGYCPQFDA-LNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGN  495 (566)
Q Consensus       417 ~~~~i~~v~q~~~-l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~  495 (566)
                      .++++||+||++. .+...|+.+|+.+.....+.+.....+.+.++++.+++.+..++++.+||||||||++|||||+.+
T Consensus        83 ~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~  162 (280)
T PRK13633         83 IRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMR  162 (280)
T ss_pred             HhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcC
Confidence            5778999999974 233469999998865444444445566788999999999889999999999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         496 PPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       496 p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      |++|||||||+|||+.++..+.+.|++++++ |.|||++|||++++.. ||++++|++|++++.|+++++
T Consensus       163 p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~~  231 (280)
T PRK13633        163 PECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTPKEI  231 (280)
T ss_pred             CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc-CCEEEEEECCEEEEecCHHHH
Confidence            9999999999999999999999999999764 9999999999999986 999999999999999998775

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=4.4e-47  Score=339.34  Aligned_cols=216  Identities=23%  Similarity=0.346  Sum_probs=197.9

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc----hHH-
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS----MDL-  416 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~----~~~-  416 (566)
                      +|+++++++..+...+...+|++|+|.|.+||.++|+||+||||||||-+++|+..|++|+|++.|+++...    ... 
T Consensus         6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~   85 (228)
T COG4181           6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL   85 (228)
T ss_pred             eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence            688999999988777788899999999999999999999999999999999999999999999999998642    222 


Q ss_pred             hcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCC
Q psy7366         417 VRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNP  496 (566)
Q Consensus       417 ~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p  496 (566)
                      ..+++|||||.+.+.|+||..||+..+..+.+-........+.++|+.+||...++.+|.+|||||||||+||||++..|
T Consensus        86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P  165 (228)
T COG4181          86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRP  165 (228)
T ss_pred             hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCC
Confidence            34789999999999999999999999988877555556677899999999999999999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEe
Q psy7366         497 PLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCL  558 (566)
Q Consensus       497 ~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~  558 (566)
                      +||+.||||.+||..+-..|.+++-.+.++ |.|.|+||||...+.+ |+|.+.|.+|+++++
T Consensus       166 ~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~R-c~R~~r~~~G~l~~~  227 (228)
T COG4181         166 DVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAAR-CDRQLRLRSGRLVED  227 (228)
T ss_pred             CEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHh-hhheeeeecceeccC
Confidence            999999999999999999999999998766 9999999999988876 999999999999753

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.6e-46  Score=371.02  Aligned_cols=216  Identities=22%  Similarity=0.372  Sum_probs=189.1

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCce
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYI  421 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i  421 (566)
                      +++++|+++.|+    +..  .++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|+++..... .++.+
T Consensus         1 ~l~~~~l~~~~~----~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~-~~~~i   73 (232)
T PRK10771          1 MLKLTDITWLYH----HLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP-SRRPV   73 (232)
T ss_pred             CeEEEEEEEEEC----Ccc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh-hhccE
Confidence            378999999996    222  39999999999999999999999999999999999999999999998754222 24579


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEE
Q psy7366         422 GYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFL  501 (566)
Q Consensus       422 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllL  501 (566)
                      +|+||++.+++.+|+.||+.+..............++.++++.+++.+..++++.+||||||||++||||++.+|++|||
T Consensus        74 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllL  153 (232)
T PRK10771         74 SMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLL  153 (232)
T ss_pred             EEEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            99999999999999999997643211111223355688999999998889999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         502 DEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       502 DEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      ||||+|||+.+++.+.++|+++.++ |.|||++|||++++..+||++++|++|++++.|+++++
T Consensus       154 DEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~  217 (232)
T PRK10771        154 DEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDEL  217 (232)
T ss_pred             eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            9999999999999999999998764 89999999999999999999999999999999987765

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.7e-46  Score=374.35  Aligned_cols=218  Identities=24%  Similarity=0.334  Sum_probs=190.5

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCC-----CccEEEEcCccCCC---
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIRD---  412 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~-----~~G~i~~~g~~~~~---  412 (566)
                      .+++++|+++.|+    ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|+++|+++..   
T Consensus         6 ~~l~~~~l~~~~~----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~   81 (254)
T PRK14273          6 AIIETENLNLFYT----DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNF   81 (254)
T ss_pred             ceEEEeeeEEEeC----CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccc
Confidence            4799999999996    45699999999999999999999999999999999999997     48999999988742   


Q ss_pred             chHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCC-CchHHHHHHHHHHHHcCC----CCccccCcCcCChhHHHHHH
Q psy7366         413 SMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNV-PSVLLNTIVNESLNKFAL----GHYSDREVRTLSGGNKRKLS  487 (566)
Q Consensus       413 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LSgGqkqrv~  487 (566)
                      .....++.++|+||++.+++ +|++||+.+.....+. ......+.+.++++.+++    .+..++++.+|||||||||+
T Consensus        82 ~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~  160 (254)
T PRK14273         82 DILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLC  160 (254)
T ss_pred             cHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHH
Confidence            22345678999999988875 8999999876543332 222345567888999887    34578899999999999999


Q ss_pred             HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         488 TAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       488 la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      |||||+.+|++|||||||+|||+.++..++++|+++++ +.|||++|||++++..+|||+++|++|+++..|+++++
T Consensus       161 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  236 (254)
T PRK14273        161 IARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE-SYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDEL  236 (254)
T ss_pred             HHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            99999999999999999999999999999999999864 79999999999999999999999999999999988765

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.3e-46  Score=387.67  Aligned_cols=223  Identities=22%  Similarity=0.259  Sum_probs=191.5

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCC----CCccEEEEcCccCCC-chH-
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK----PTSGNAYVMNHSIRD-SMD-  415 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~----~~~G~i~~~g~~~~~-~~~-  415 (566)
                      +|+++|+++.|....+...+|+|+||+|.+||++||+|+||||||||+++|+|+++    |++|+|.++|+++.. ... 
T Consensus         3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~   82 (330)
T PRK15093          3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE   82 (330)
T ss_pred             eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence            68999999999533234579999999999999999999999999999999999997    589999999998854 221 


Q ss_pred             --H-hcCceEEEecCCC--CCCCCCHHHHHHHHHHhc---C---CCchHHHHHHHHHHHHcCCCC---ccccCcCcCChh
Q psy7366         416 --L-VRSYIGYCPQFDA--LNDRLTPREHLEFYSRVR---N---VPSVLLNTIVNESLNKFALGH---YSDREVRTLSGG  481 (566)
Q Consensus       416 --~-~~~~i~~v~q~~~--l~~~~tv~e~l~~~~~~~---~---~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~LSgG  481 (566)
                        . .++.|+||||++.  +++.+|+.+++.......   +   ....+..+++.++++.++|.+   ..++++.+||||
T Consensus        83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG  162 (330)
T PRK15093         83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEG  162 (330)
T ss_pred             HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHH
Confidence              1 2457999999975  678899999997543211   1   011234567889999999974   468999999999


Q ss_pred             HHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecC
Q psy7366         482 NKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS  560 (566)
Q Consensus       482 qkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~  560 (566)
                      |||||+|||||+.+|++|||||||++||+.++..++++|+++.++ |.|||+||||++++..+|||+++|++|+|++.|+
T Consensus       163 ~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive~g~  242 (330)
T PRK15093        163 ECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETAP  242 (330)
T ss_pred             HHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECC
Confidence            999999999999999999999999999999999999999999875 9999999999999999999999999999999998


Q ss_pred             cccc
Q psy7366         561 ATHL  564 (566)
Q Consensus       561 ~~~l  564 (566)
                      ++++
T Consensus       243 ~~~i  246 (330)
T PRK15093        243 SKEL  246 (330)
T ss_pred             HHHH
Confidence            8765

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=100.00  E-value=1.8e-46  Score=371.37  Aligned_cols=202  Identities=32%  Similarity=0.454  Sum_probs=179.6

Q ss_pred             CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEe-cCCCCCCCCCH
Q psy7366         358 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCP-QFDALNDRLTP  436 (566)
Q Consensus       358 ~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~-q~~~l~~~~tv  436 (566)
                      .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.......+++++|++ |++.+++.+|+
T Consensus        33 ~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv  112 (236)
T cd03267          33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPV  112 (236)
T ss_pred             CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcH
Confidence            56799999999999999999999999999999999999999999999999876443334567899998 55678888999


Q ss_pred             HHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHH
Q psy7366         437 REHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFL  516 (566)
Q Consensus       437 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l  516 (566)
                      .||+.+.....+.........+.++++.+++.+..++++.+||||||||++||+||+.+|++|||||||+|||+.+++.+
T Consensus       113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l  192 (236)
T cd03267         113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENI  192 (236)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHH
Confidence            99998765544444444455678899999998888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEec
Q psy7366         517 WTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLG  559 (566)
Q Consensus       517 ~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g  559 (566)
                      .++|.+++++ +.|||++||+++++..+||++++|++|++++.|
T Consensus       193 ~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g  236 (236)
T cd03267         193 RNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG  236 (236)
T ss_pred             HHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence            9999998765 899999999999999999999999999998764

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=100.00  E-value=3e-46  Score=364.22  Aligned_cols=211  Identities=23%  Similarity=0.393  Sum_probs=185.8

Q ss_pred             EEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceE
Q psy7366         343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIG  422 (566)
Q Consensus       343 l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~  422 (566)
                      ++++|+++.|+    .  ++.++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ..++.++
T Consensus         1 ~~~~~l~~~~~----~--~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~i~   73 (213)
T TIGR01277         1 LALDKVRYEYE----H--LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA-PYQRPVS   73 (213)
T ss_pred             CeEEeeeEEeC----C--cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC-hhccceE
Confidence            36899999995    2  468999999999999999999999999999999999999999999999875422 2456799


Q ss_pred             EEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEe
Q psy7366         423 YCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLD  502 (566)
Q Consensus       423 ~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLD  502 (566)
                      |+||++.+++.+|+.||+.+.............+.+.++++.+++.+..++++.+||||||||++|||||+.+|+++|||
T Consensus        74 ~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD  153 (213)
T TIGR01277        74 MLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLD  153 (213)
T ss_pred             EEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            99999999999999999976532211112223456788999999988889999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecC
Q psy7366         503 EPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS  560 (566)
Q Consensus       503 EPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~  560 (566)
                      |||+|||+.++..+.++|+++.++ |.|||++||+++++..+||++++|++|++++.|+
T Consensus       154 EPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~  212 (213)
T TIGR01277       154 EPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD  212 (213)
T ss_pred             CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence            999999999999999999998765 8999999999999999999999999999998874

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=100.00  E-value=2.7e-46  Score=369.25  Aligned_cols=217  Identities=27%  Similarity=0.461  Sum_probs=194.1

Q ss_pred             EEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceE
Q psy7366         343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIG  422 (566)
Q Consensus       343 l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~  422 (566)
                      +.++|++++|+    ++++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|+++..... .++.++
T Consensus         1 l~~~~l~~~~~----~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~-~~~~i~   75 (232)
T cd03300           1 IELENVSKFYG----GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP-HKRPVN   75 (232)
T ss_pred             CEEEeEEEEeC----CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh-hhcceE
Confidence            46899999996    4679999999999999999999999999999999999999999999999998754222 256799


Q ss_pred             EEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEe
Q psy7366         423 YCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLD  502 (566)
Q Consensus       423 ~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLD  502 (566)
                      |++|++.+++.+|+.+|+.+.....+.........+.++++.+++.+..++.+.+||+||+||++|||||+.+|+++|||
T Consensus        76 ~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllD  155 (232)
T cd03300          76 TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLD  155 (232)
T ss_pred             EEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            99999999988999999987654443333344566788999999998899999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         503 EPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       503 EPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      |||+|||+.++..++++|++++++ |.|||++||+++++..+|||+++|++|++++.|+.+++
T Consensus       156 EP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~  218 (232)
T cd03300         156 EPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEI  218 (232)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHH
Confidence            999999999999999999999765 89999999999999999999999999999999987654

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.9e-46  Score=380.82  Aligned_cols=222  Identities=25%  Similarity=0.355  Sum_probs=191.0

Q ss_pred             eEEEeeeEEEeCCcCC-CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC------ch
Q psy7366         342 VLVVKRLFKIYANSKG-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD------SM  414 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~-~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~------~~  414 (566)
                      .|+++|+++.|+.... ...+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..      ..
T Consensus         6 ~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~   85 (289)
T PRK13645          6 DIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEV   85 (289)
T ss_pred             eEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccH
Confidence            5899999999963110 1359999999999999999999999999999999999999999999999988742      22


Q ss_pred             HHhcCceEEEecCCC--CCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCC-CccccCcCcCChhHHHHHHHHHH
Q psy7366         415 DLVRSYIGYCPQFDA--LNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALG-HYSDREVRTLSGGNKRKLSTAIA  491 (566)
Q Consensus       415 ~~~~~~i~~v~q~~~--l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqrv~la~a  491 (566)
                      ..+++.++|++|++.  +++ .|+.||+.+.....+.........+.++++.+++. ...++++.+||||||||++||||
T Consensus        86 ~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~lara  164 (289)
T PRK13645         86 KRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGI  164 (289)
T ss_pred             HHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHH
Confidence            345678999999973  444 59999998764433333333445678899999995 67899999999999999999999


Q ss_pred             HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         492 LLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       492 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      |+.+|++|||||||+|||+.+++.++++|+++.++ |+|||++|||++++..+||++++|++|++++.|+++++
T Consensus       165 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  238 (289)
T PRK13645        165 IAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEI  238 (289)
T ss_pred             HHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            99999999999999999999999999999998764 89999999999999999999999999999999987764

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.7e-46  Score=379.48  Aligned_cols=221  Identities=28%  Similarity=0.428  Sum_probs=195.1

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCc---cEEEEcCccCCC-chHH
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS---GNAYVMNHSIRD-SMDL  416 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~---G~i~~~g~~~~~-~~~~  416 (566)
                      .+|+++|+++.|+..  .+++|+++||+|++||+++|+||||||||||+++|+|+++|++   |+|.++|+++.. ....
T Consensus         4 ~~l~i~~l~~~~~~~--~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~   81 (282)
T PRK13640          4 NIVEFKHVSFTYPDS--KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWD   81 (282)
T ss_pred             ceEEEEEEEEEcCCC--CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHH
Confidence            368999999999621  2469999999999999999999999999999999999999987   899999998854 2334


Q ss_pred             hcCceEEEecCCC-CCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCC
Q psy7366         417 VRSYIGYCPQFDA-LNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGN  495 (566)
Q Consensus       417 ~~~~i~~v~q~~~-l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~  495 (566)
                      .++++||+||++. +++..|+.||+.+.....+.......+++.++++.+++.+..++++.+|||||+||++|||||+.+
T Consensus        82 ~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~  161 (282)
T PRK13640         82 IREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVE  161 (282)
T ss_pred             HHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcC
Confidence            5678999999984 667789999998764444444444556788999999999889999999999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         496 PPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       496 p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      |++|||||||+|||+.++..+.++|+++.++ |.|||++||+++++. +|||+++|++|++++.|+++++
T Consensus       162 P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~  230 (282)
T PRK13640        162 PKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN-MADQVLVLDDGKLLAQGSPVEI  230 (282)
T ss_pred             CCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEEeCCHHHH
Confidence            9999999999999999999999999999765 899999999999985 7999999999999999988764

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=100.00  E-value=2.6e-46  Score=376.10  Aligned_cols=220  Identities=23%  Similarity=0.399  Sum_probs=193.4

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCC---ccEEEEcCccCCCc----
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT---SGNAYVMNHSIRDS----  413 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~----  413 (566)
                      ++|+++|+++.|+    ++.+|+++||+|.+||+++|+||||||||||+++|+|+++|+   +|+|+++|.++...    
T Consensus         3 ~~l~~~nl~~~~~----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~   78 (262)
T PRK09984          3 TIIRVEKLAKTFN----QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLA   78 (262)
T ss_pred             cEEEEeeEEEEeC----CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccc
Confidence            3799999999996    467999999999999999999999999999999999999986   49999999887431    


Q ss_pred             --hHHhcCceEEEecCCCCCCCCCHHHHHHHHHHh--------cCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHH
Q psy7366         414 --MDLVRSYIGYCPQFDALNDRLTPREHLEFYSRV--------RNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNK  483 (566)
Q Consensus       414 --~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~--------~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqk  483 (566)
                        ....+++++|+||++.+++.+|+.||+.+....        ...........+.++++.+++.+..++++.+||||||
T Consensus        79 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~  158 (262)
T PRK09984         79 RDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQ  158 (262)
T ss_pred             hhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHH
Confidence              234467799999999999999999999764321        0111223345788999999998888999999999999


Q ss_pred             HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcc
Q psy7366         484 RKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSAT  562 (566)
Q Consensus       484 qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~  562 (566)
                      |||+|||||+.+|++|||||||+|||+.+++.+.++|++++++ |.|||++|||++++..+||++++|++|+++++|+++
T Consensus       159 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g~~~  238 (262)
T PRK09984        159 QRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQ  238 (262)
T ss_pred             HHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence            9999999999999999999999999999999999999999764 899999999999999999999999999999999887


Q ss_pred             cc
Q psy7366         563 HL  564 (566)
Q Consensus       563 ~l  564 (566)
                      ++
T Consensus       239 ~~  240 (262)
T PRK09984        239 QF  240 (262)
T ss_pred             Hh
Confidence            65

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.4e-46  Score=376.61  Aligned_cols=221  Identities=28%  Similarity=0.398  Sum_probs=195.0

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcC
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRS  419 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~  419 (566)
                      ++++++|+++.|+.  ..+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .....++
T Consensus         6 ~~l~i~~l~~~~~~--~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~   83 (269)
T PRK13648          6 SIIVFKNVSFQYQS--DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRK   83 (269)
T ss_pred             ceEEEEEEEEEcCC--CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHh
Confidence            36999999999963  12459999999999999999999999999999999999999999999999998754 3345667


Q ss_pred             ceEEEecCCC-CCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCE
Q psy7366         420 YIGYCPQFDA-LNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPL  498 (566)
Q Consensus       420 ~i~~v~q~~~-l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~l  498 (566)
                      +++|+||++. +++..|+.+|+.+.............+.+.++++.+++.+..++++.+||+|||||++|||||+.+|++
T Consensus        84 ~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l  163 (269)
T PRK13648         84 HIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSV  163 (269)
T ss_pred             heeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence            8999999985 677789999998765433333444455678899999999888999999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         499 IFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       499 llLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      |||||||+|||+.++..++++|+++.++ |.|||++||+++++.. |||+++|++|++++.|+++++
T Consensus       164 llLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~~  229 (269)
T PRK13648        164 IILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVYKEGTPTEI  229 (269)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhc-CCEEEEEECCEEEEecCHHHH
Confidence            9999999999999999999999998765 8999999999999986 999999999999999988765

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=100.00  E-value=3.8e-46  Score=366.09  Aligned_cols=210  Identities=35%  Similarity=0.525  Sum_probs=188.8

Q ss_pred             EEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceE
Q psy7366         343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIG  422 (566)
Q Consensus       343 l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~  422 (566)
                      |+++|+++.|+    ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...   .++.++
T Consensus         1 l~l~~v~~~~~----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~---~~~~~~   73 (223)
T TIGR03740         1 LETKNLSKRFG----KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRK---DLHKIG   73 (223)
T ss_pred             CEEEeEEEEEC----CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccc---ccccEE
Confidence            46899999996    45799999999999999999999999999999999999999999999999876431   124799


Q ss_pred             EEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEe
Q psy7366         423 YCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLD  502 (566)
Q Consensus       423 ~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLD  502 (566)
                      |+||++.+++.+|+.||+.+.....+..    ...+.++++.+++.+..++++.+|||||+||++||||++.+|++||||
T Consensus        74 ~~~q~~~~~~~~t~~~~~~~~~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllD  149 (223)
T TIGR03740        74 SLIESPPLYENLTARENLKVHTTLLGLP----DSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILD  149 (223)
T ss_pred             EEcCCCCccccCCHHHHHHHHHHHcCCC----HHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEEC
Confidence            9999998888899999998765443322    245778999999998889999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccc
Q psy7366         503 EPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATH  563 (566)
Q Consensus       503 EPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~  563 (566)
                      |||+|||+.+++.++++|++++++|.|||++|||++++..+|||+++|++|++++.|++.+
T Consensus       150 EP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~  210 (223)
T TIGR03740       150 EPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK  210 (223)
T ss_pred             CCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence            9999999999999999999997778999999999999999999999999999999988653

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=7.1e-46  Score=373.77  Aligned_cols=219  Identities=21%  Similarity=0.321  Sum_probs=191.1

Q ss_pred             CCeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCC-----CccEEEEcCccCCC--
Q psy7366         340 GDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIRD--  412 (566)
Q Consensus       340 ~~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~-----~~G~i~~~g~~~~~--  412 (566)
                      ...|+++|+++.|+    ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|+++|+++..  
T Consensus        17 ~~~l~~~nl~~~~~----~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~   92 (267)
T PRK14235         17 EIKMRARDVSVFYG----EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPR   92 (267)
T ss_pred             CceEEEEeEEEEEC----CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccc
Confidence            34799999999996    45799999999999999999999999999999999999975     89999999998753  


Q ss_pred             -chHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCC--CchHHHHHHHHHHHHcCCCC----ccccCcCcCChhHHHH
Q psy7366         413 -SMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNV--PSVLLNTIVNESLNKFALGH----YSDREVRTLSGGNKRK  485 (566)
Q Consensus       413 -~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~----~~~~~~~~LSgGqkqr  485 (566)
                       ....+++.++|+||++.+++. |+.||+.+....++.  +.......+.++++.+++.+    ..++++.+||||||||
T Consensus        93 ~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qr  171 (267)
T PRK14235         93 LDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQR  171 (267)
T ss_pred             cchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHH
Confidence             223456789999999988875 999999876543332  22233456788999999953    4678899999999999


Q ss_pred             HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         486 LSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       486 v~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      ++|||||+.+|++|||||||+|||+.++..+.++|+++.+ +.|||++|||++++..+||++++|++|++++.|+++++
T Consensus       172 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~  249 (267)
T PRK14235        172 LCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKM  249 (267)
T ss_pred             HHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence            9999999999999999999999999999999999999865 68999999999999999999999999999999987764

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=100.00  E-value=4.7e-46  Score=368.69  Aligned_cols=218  Identities=26%  Similarity=0.433  Sum_probs=194.6

Q ss_pred             EEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceE
Q psy7366         343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIG  422 (566)
Q Consensus       343 l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~  422 (566)
                      ++++|+++.|+    ++.+|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ..++.++
T Consensus         1 i~i~~l~~~~~----~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~-~~~~~i~   75 (237)
T TIGR00968         1 IEIANISKRFG----SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVH-ARDRKIG   75 (237)
T ss_pred             CEEEEEEEEEC----CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCC-hhhcCEE
Confidence            46899999997    457999999999999999999999999999999999999999999999998875422 2356899


Q ss_pred             EEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEe
Q psy7366         423 YCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLD  502 (566)
Q Consensus       423 ~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLD  502 (566)
                      |+||++.+|+.+|+.||+.+.....+.......+.+.++++.+++.+..++.+.+||+||+||++|||||+.+|+++|||
T Consensus        76 ~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllD  155 (237)
T TIGR00968        76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLD  155 (237)
T ss_pred             EEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            99999999998999999987654433333334456789999999988889999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         503 EPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       503 EPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      |||+|||+.++..++++|.++.++ |+|||++||+++++.++||++++|++|++++.|+.+++.
T Consensus       156 EP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~  219 (237)
T TIGR00968       156 EPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVY  219 (237)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHH
Confidence            999999999999999999998776 899999999999999999999999999999999887653

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.9e-46  Score=370.68  Aligned_cols=217  Identities=20%  Similarity=0.323  Sum_probs=190.1

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCC---CCccEEEEcCccCCC-chHHh
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK---PTSGNAYVMNHSIRD-SMDLV  417 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~-~~~~~  417 (566)
                      +++++|+++.|+    ++.+|+|+||+|.+||+++|+||||||||||+++|+|+++   |++|+|.++|+++.. .....
T Consensus         2 ~~~~~~l~~~~~----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~   77 (246)
T PRK14269          2 IAKTTNLNLFYG----KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVAL   77 (246)
T ss_pred             ceeeeeeEEEEC----CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHH
Confidence            478999999996    4679999999999999999999999999999999999974   689999999998864 23445


Q ss_pred             cCceEEEecCCCCCCCCCHHHHHHHHHHhcCC--CchHHHHHHHHHHHHcCCC----CccccCcCcCChhHHHHHHHHHH
Q psy7366         418 RSYIGYCPQFDALNDRLTPREHLEFYSRVRNV--PSVLLNTIVNESLNKFALG----HYSDREVRTLSGGNKRKLSTAIA  491 (566)
Q Consensus       418 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~--~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqrv~la~a  491 (566)
                      ++.++|+||++.+|+ .|++||+.+.....+.  .......++.++++.+++.    +..++++.+|||||||||+||||
T Consensus        78 ~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara  156 (246)
T PRK14269         78 RKNVGMVFQQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARA  156 (246)
T ss_pred             hhhEEEEecCCcccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHH
Confidence            678999999998887 6999999876443332  1223445678899999995    34678899999999999999999


Q ss_pred             HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         492 LLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       492 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      |+.+|++|||||||+|||+.++..+.+.|.++.+ |+|||++||+++++..+||++++|++|++++.|+++++
T Consensus       157 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  228 (246)
T PRK14269        157 LAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEF  228 (246)
T ss_pred             HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHH
Confidence            9999999999999999999999999999999864 89999999999999999999999999999999987764

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=100.00  E-value=4.3e-46  Score=363.33  Aligned_cols=204  Identities=29%  Similarity=0.428  Sum_probs=181.1

Q ss_pred             eeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-----chHHhcCce
Q psy7366         347 RLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-----SMDLVRSYI  421 (566)
Q Consensus       347 ~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-----~~~~~~~~i  421 (566)
                      +|+|+|+    ++.+  |+||+|++ |+++|+||||||||||+++|+|+++|++|+|.++|.++..     .....++.+
T Consensus         5 ~l~~~~~----~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i   77 (214)
T cd03297           5 DIEKRLP----DFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKI   77 (214)
T ss_pred             eeeEecC----Ceee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcE
Confidence            8999997    3444  99999999 9999999999999999999999999999999999988742     122346689


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEE
Q psy7366         422 GYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFL  501 (566)
Q Consensus       422 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllL  501 (566)
                      +|+||++.+++.+|+.+|+.+.....  ........+.++++.+++.+..++++.+||||||||++|||||+.+|++|||
T Consensus        78 ~~~~q~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llll  155 (214)
T cd03297          78 GLVFQQYALFPHLNVRENLAFGLKRK--RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLL  155 (214)
T ss_pred             EEEecCCccCCCCCHHHHHHHHHhhC--CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            99999999998999999998764322  2223445688899999998888999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEec
Q psy7366         502 DEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLG  559 (566)
Q Consensus       502 DEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g  559 (566)
                      ||||+|||+.+++.+.++|++++++ |.|||++|||++++..+||++++|++|++++.|
T Consensus       156 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g  214 (214)
T cd03297         156 DEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG  214 (214)
T ss_pred             cCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence            9999999999999999999999776 899999999999999999999999999998765

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.2e-46  Score=389.63  Aligned_cols=210  Identities=21%  Similarity=0.366  Sum_probs=188.1

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc-----hHH
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS-----MDL  416 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-----~~~  416 (566)
                      +|++ |+++.|+    ++ .+ |+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...     ...
T Consensus         1 ~l~~-~l~k~~~----~~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~   73 (352)
T PRK11144          1 MLEL-NFKQQLG----DL-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPP   73 (352)
T ss_pred             CeEE-EEEEEeC----CE-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccch
Confidence            3667 9999996    33 23 89999999999999999999999999999999999999999999887431     223


Q ss_pred             hcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCC
Q psy7366         417 VRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNP  496 (566)
Q Consensus       417 ~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p  496 (566)
                      .+++++|+||++.+|+.+|+.||+.+...      ....+++.++++.+++.+..++++.+|||||||||+|||||+.+|
T Consensus        74 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~------~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p  147 (352)
T PRK11144         74 EKRRIGYVFQDARLFPHYKVRGNLRYGMA------KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAP  147 (352)
T ss_pred             hhCCEEEEcCCcccCCCCcHHHHHHhhhh------hhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence            46789999999999999999999987532      122456789999999998899999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         497 PLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       497 ~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      ++|||||||+|||+.++..+++.|+++.++ |.|||++|||++++..+||++++|++|+++..|+++++
T Consensus       148 ~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i  216 (352)
T PRK11144        148 ELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEV  216 (352)
T ss_pred             CEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHH
Confidence            999999999999999999999999999776 89999999999999999999999999999999998775

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6.2e-46  Score=376.03  Aligned_cols=221  Identities=24%  Similarity=0.366  Sum_probs=194.5

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCc
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSY  420 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~  420 (566)
                      +|+++|+++.|+.. ....+|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|+++.. .....+++
T Consensus         4 ~l~~~~l~~~~~~~-~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~   82 (277)
T PRK13642          4 ILEVENLVFKYEKE-SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRK   82 (277)
T ss_pred             eEEEEEEEEEcCCC-CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcc
Confidence            68999999999631 12459999999999999999999999999999999999999999999999998754 23445678


Q ss_pred             eEEEecCCC-CCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEE
Q psy7366         421 IGYCPQFDA-LNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLI  499 (566)
Q Consensus       421 i~~v~q~~~-l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~ll  499 (566)
                      ++|+||++. +++..|+.||+.+.....+.......+++.++++.+++.+..++++.+||||||||++|||||+.+|++|
T Consensus        83 i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~ll  162 (277)
T PRK13642         83 IGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEII  162 (277)
T ss_pred             eEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence            999999974 5667899999987544333333344566889999999988889999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         500 FLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       500 lLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      ||||||+|||+.++..++++|++++++ |.|||++|||++++. .||++++|++|++++.|+++++
T Consensus       163 llDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~  227 (277)
T PRK13642        163 ILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAA-SSDRILVMKAGEIIKEAAPSEL  227 (277)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEeCCHHHH
Confidence            999999999999999999999999876 999999999999997 5999999999999999998765

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.6e-46  Score=372.74  Aligned_cols=218  Identities=21%  Similarity=0.324  Sum_probs=190.9

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCC-----CCccEEEEcCccCCC---
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIRD---  412 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~---  412 (566)
                      .+++++|+++.|+    ++.+|+|+||+|++||+++|+||||||||||+++|+|+++     |++|+|.++|+++..   
T Consensus        12 ~~l~~~~l~~~~~----~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~   87 (260)
T PRK10744         12 SKIQVRNLNFYYG----KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ   87 (260)
T ss_pred             ceEEEEEEEEEeC----CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence            4699999999996    4579999999999999999999999999999999999986     589999999998742   


Q ss_pred             chHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhc-CCCchHHHHHHHHHHHHcCCC----CccccCcCcCChhHHHHHH
Q psy7366         413 SMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVR-NVPSVLLNTIVNESLNKFALG----HYSDREVRTLSGGNKRKLS  487 (566)
Q Consensus       413 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqrv~  487 (566)
                      ....++++++|+||++.+++ .|+++|+.+..... +.+.....+++.++++.+++.    +..++++.+||||||||++
T Consensus        88 ~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~  166 (260)
T PRK10744         88 DIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLC  166 (260)
T ss_pred             chHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHH
Confidence            23345678999999998887 79999998764432 233334446688899999974    4568899999999999999


Q ss_pred             HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         488 TAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       488 la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      |||||+.+|++|||||||+|||+.+++.+.+.|+++++ +.|||++||+++++..+||++++|++|++++.|+++++
T Consensus       167 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  242 (260)
T PRK10744        167 IARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ-DYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTI  242 (260)
T ss_pred             HHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            99999999999999999999999999999999999854 78999999999999999999999999999999987765

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=100.00  E-value=8.3e-46  Score=366.44  Aligned_cols=216  Identities=30%  Similarity=0.467  Sum_probs=192.5

Q ss_pred             EEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceE
Q psy7366         343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIG  422 (566)
Q Consensus       343 l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~  422 (566)
                      |.++|+++.|+    + ++|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|+++|.++..... .++.++
T Consensus         1 l~~~~l~~~~~----~-~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~-~~~~i~   74 (235)
T cd03299           1 LKVENLSKDWK----E-FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP-EKRDIS   74 (235)
T ss_pred             CeeEeEEEEeC----C-ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh-hHcCEE
Confidence            46889999996    3 38999999999999999999999999999999999999999999999998754222 256899


Q ss_pred             EEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEe
Q psy7366         423 YCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLD  502 (566)
Q Consensus       423 ~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLD  502 (566)
                      |+||++.+++.+|+.||+.+.....+.......+.+.++++.+++.+..++++.+|||||+||++|||||+.+|+++|||
T Consensus        75 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD  154 (235)
T cd03299          75 YVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLD  154 (235)
T ss_pred             EEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence            99999999988999999987654433333444556788999999998899999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         503 EPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       503 EPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      |||+|||+.+++.++++|+++..+ |.|||++||+++++..+||++++|++|++++.|+++++
T Consensus       155 EPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  217 (235)
T cd03299         155 EPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEV  217 (235)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence            999999999999999999998765 99999999999999999999999999999999987654

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.1e-45  Score=370.89  Aligned_cols=218  Identities=21%  Similarity=0.302  Sum_probs=191.0

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCC-----CccEEEEcCccCCC---c
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIRD---S  413 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~-----~~G~i~~~g~~~~~---~  413 (566)
                      .++++|+++.|+    ++.+|+++||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|+++..   .
T Consensus         4 ~l~i~~v~~~~~----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~   79 (258)
T PRK14241          4 RIDVKDLNIYYG----SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVD   79 (258)
T ss_pred             cEEEeeEEEEEC----CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccC
Confidence            589999999996    45799999999999999999999999999999999999974     69999999988742   2


Q ss_pred             hHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCC-CchHHHHHHHHHHHHcCCC----CccccCcCcCChhHHHHHHH
Q psy7366         414 MDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNV-PSVLLNTIVNESLNKFALG----HYSDREVRTLSGGNKRKLST  488 (566)
Q Consensus       414 ~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqrv~l  488 (566)
                      ....++.++|++|++.+++.+|+.||+.+.....+. ......+.+.++++.+++.    +..++++.+|||||||||+|
T Consensus        80 ~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l  159 (258)
T PRK14241         80 PVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCI  159 (258)
T ss_pred             hHHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHH
Confidence            334567899999999999999999999876543332 2333455678889999884    46688999999999999999


Q ss_pred             HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEE------CCEEEEecCcc
Q psy7366         489 AIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMV------NGQFTCLGSAT  562 (566)
Q Consensus       489 a~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~------~G~i~~~g~~~  562 (566)
                      ||||+.+|++|||||||+|||+.++..+.++|+++++ ++|||++|||++++..+|||+++|+      +|++++.|+++
T Consensus       160 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~  238 (258)
T PRK14241        160 ARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDTE  238 (258)
T ss_pred             HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEecCCHH
Confidence            9999999999999999999999999999999999864 6899999999999999999999997      79999999887


Q ss_pred             cc
Q psy7366         563 HL  564 (566)
Q Consensus       563 ~l  564 (566)
                      ++
T Consensus       239 ~~  240 (258)
T PRK14241        239 KI  240 (258)
T ss_pred             HH
Confidence            65

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=100.00  E-value=5.6e-46  Score=388.38  Aligned_cols=210  Identities=23%  Similarity=0.403  Sum_probs=187.4

Q ss_pred             eeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc-----hHHhcCce
Q psy7366         347 RLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS-----MDLVRSYI  421 (566)
Q Consensus       347 ~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-----~~~~~~~i  421 (566)
                      |+++.|+    ++. + ++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...     ....++.+
T Consensus         4 ~l~~~~~----~~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i   77 (354)
T TIGR02142         4 RFSKRLG----DFS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRI   77 (354)
T ss_pred             EEEEEEC----CEE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCe
Confidence            7899996    333 5 99999999999999999999999999999999999999999999987431     12346789


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEE
Q psy7366         422 GYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFL  501 (566)
Q Consensus       422 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllL  501 (566)
                      +|+||++.+|+.+|+.||+.+.....  ......+++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||
T Consensus        78 ~~v~q~~~l~~~~tv~enl~~~~~~~--~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllL  155 (354)
T TIGR02142        78 GYVFQEARLFPHLSVRGNLRYGMKRA--RPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLM  155 (354)
T ss_pred             EEEecCCccCCCCcHHHHHHHHhhcc--ChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            99999999999999999998764322  2223345688999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         502 DEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       502 DEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      ||||+|||+.+++.+++.|++++++ |.|||++|||++++..+||++++|++|+++..|+++++
T Consensus       156 DEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  219 (354)
T TIGR02142       156 DEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEV  219 (354)
T ss_pred             cCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHH
Confidence            9999999999999999999999876 89999999999999999999999999999999988765

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=100.00  E-value=1.2e-45  Score=370.37  Aligned_cols=219  Identities=24%  Similarity=0.396  Sum_probs=190.6

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCcc-----CCCc-hH
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS-----IRDS-MD  415 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~-----~~~~-~~  415 (566)
                      +++++|+++.|+    ++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|++     +... ..
T Consensus         6 ~l~~~~l~~~~~----~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~   81 (258)
T PRK11701          6 LLSVRGLTKLYG----PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEA   81 (258)
T ss_pred             eEEEeeeEEEcC----CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHH
Confidence            699999999996    4579999999999999999999999999999999999999999999999987     6431 21


Q ss_pred             H----hcCceEEEecCCC--CCCCCCHHHHHHHHHHhcCC-CchHHHHHHHHHHHHcCCC-CccccCcCcCChhHHHHHH
Q psy7366         416 L----VRSYIGYCPQFDA--LNDRLTPREHLEFYSRVRNV-PSVLLNTIVNESLNKFALG-HYSDREVRTLSGGNKRKLS  487 (566)
Q Consensus       416 ~----~~~~i~~v~q~~~--l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqrv~  487 (566)
                      .    .++.++|+||++.  +++.+|+.+|+.+....... ........+.++++.+++. ...++++.+||||||||++
T Consensus        82 ~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~  161 (258)
T PRK11701         82 ERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQ  161 (258)
T ss_pred             HHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHH
Confidence            1    3567999999973  67778999998764322221 2223455678899999997 4778999999999999999


Q ss_pred             HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         488 TAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       488 la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      |||||+.+|++|||||||+|||+.++..+++.|++++++ |.|||++|||++++..+||++++|++|++++.|+++++
T Consensus       162 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~  239 (258)
T PRK11701        162 IARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQV  239 (258)
T ss_pred             HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence            999999999999999999999999999999999998765 89999999999999999999999999999999988765

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=100.00  E-value=7.5e-46  Score=373.66  Aligned_cols=219  Identities=21%  Similarity=0.297  Sum_probs=191.3

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCC--------ccEEEEcCccCCC-
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT--------SGNAYVMNHSIRD-  412 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~--------~G~i~~~g~~~~~-  412 (566)
                      +|+++|+++.|+    ++.+|+++||+|++|++++|+||||||||||+|+|+|+++|+        +|+|.++|.++.. 
T Consensus         1 ml~~~nl~~~~~----~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~   76 (272)
T PRK13547          1 MLTADHLHVARR----HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAI   76 (272)
T ss_pred             CeEEEEEEEEEC----CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccC
Confidence            478999999996    467999999999999999999999999999999999999998        9999999998754 


Q ss_pred             chHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhc----CCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHH
Q psy7366         413 SMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVR----NVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLST  488 (566)
Q Consensus       413 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~l  488 (566)
                      .....++.++|+||++.+++.+|+.||+.+.....    ........+.+.++++.+++.+..++++.+|||||+|||+|
T Consensus        77 ~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~l  156 (272)
T PRK13547         77 DAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQF  156 (272)
T ss_pred             CHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHH
Confidence            33344567999999987666689999997743111    11112334567889999999988899999999999999999


Q ss_pred             HHHHc---------CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEe
Q psy7366         489 AIALL---------GNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCL  558 (566)
Q Consensus       489 a~al~---------~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~  558 (566)
                      ||||+         .+|++|||||||+|||+.++..+.++|+++.++ |.|||++|||++++..+||++++|++|++++.
T Consensus       157 aral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~~  236 (272)
T PRK13547        157 ARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAH  236 (272)
T ss_pred             HHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEEe
Confidence            99999         599999999999999999999999999998776 89999999999999999999999999999999


Q ss_pred             cCcccc
Q psy7366         559 GSATHL  564 (566)
Q Consensus       559 g~~~~l  564 (566)
                      |+++++
T Consensus       237 g~~~~~  242 (272)
T PRK13547        237 GAPADV  242 (272)
T ss_pred             cCHHHH
Confidence            987765

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.7e-45  Score=368.20  Aligned_cols=219  Identities=20%  Similarity=0.305  Sum_probs=191.0

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCC--C---CccEEEEcCccCCC---
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK--P---TSGNAYVMNHSIRD---  412 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--~---~~G~i~~~g~~~~~---  412 (566)
                      ..++++|+++.|+    ++.+|+|+||+|++||+++|+||||||||||+++|+|+++  |   ++|+|.++|+++..   
T Consensus         3 ~~l~~~nl~~~~~----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~   78 (252)
T PRK14256          3 NKVKLEQLNVHFG----KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGV   78 (252)
T ss_pred             cEEEEEEEEEEeC----CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccC
Confidence            3589999999996    4579999999999999999999999999999999999986  4   68999999998753   


Q ss_pred             chHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCC-CchHHHHHHHHHHHHcCCCC----ccccCcCcCChhHHHHHH
Q psy7366         413 SMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNV-PSVLLNTIVNESLNKFALGH----YSDREVRTLSGGNKRKLS  487 (566)
Q Consensus       413 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~----~~~~~~~~LSgGqkqrv~  487 (566)
                      .....++.++|+||++.+++.+|+.||+.+.....+. ......+.+.++++.+++..    ..++.+.+||||||||++
T Consensus        79 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~  158 (252)
T PRK14256         79 DPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLC  158 (252)
T ss_pred             ChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHH
Confidence            1234577899999999999989999999875443322 22333456788899999853    457889999999999999


Q ss_pred             HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         488 TAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       488 la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      |||||+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++|||++++..+|||+++|++|++++.|+++++
T Consensus       159 laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  234 (252)
T PRK14256        159 IARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKI  234 (252)
T ss_pred             HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence            99999999999999999999999999999999999975 58999999999999999999999999999999988765

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.4e-45  Score=370.17  Aligned_cols=219  Identities=23%  Similarity=0.361  Sum_probs=190.6

Q ss_pred             CCeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCC--C---CccEEEEcCccCCC--
Q psy7366         340 GDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK--P---TSGNAYVMNHSIRD--  412 (566)
Q Consensus       340 ~~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--~---~~G~i~~~g~~~~~--  412 (566)
                      ..+++++|+++.|+    .+.+|+++||+|++||+++|+||||||||||+++|+|+++  |   ++|+|.++|+++..  
T Consensus        10 ~~~l~i~~l~~~~~----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~   85 (259)
T PRK14274         10 QEVYQINGMNLWYG----QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGK   85 (259)
T ss_pred             CceEEEeeEEEEEC----CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccc
Confidence            34799999999996    4579999999999999999999999999999999999997  3   58999999998742  


Q ss_pred             -chHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCC-CchHHHHHHHHHHHHcCCC----CccccCcCcCChhHHHHH
Q psy7366         413 -SMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNV-PSVLLNTIVNESLNKFALG----HYSDREVRTLSGGNKRKL  486 (566)
Q Consensus       413 -~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqrv  486 (566)
                       .....++.++|+||++.+++. |++||+.+.....+. .......++.++++.+++.    +..++++.+||||||||+
T Consensus        86 ~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv  164 (259)
T PRK14274         86 VDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRL  164 (259)
T ss_pred             cCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHH
Confidence             223456789999999988875 999999876443332 2233345677889999885    346889999999999999


Q ss_pred             HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         487 STAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       487 ~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      +|||+|+.+|++|||||||+|||+.++..++++|+++.+ +.|||++|||++++..+|||+++|++|+++++|+++++
T Consensus       165 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  241 (259)
T PRK14274        165 CIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKM  241 (259)
T ss_pred             HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence            999999999999999999999999999999999999865 78999999999999999999999999999999998765

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.9e-45  Score=367.42  Aligned_cols=218  Identities=21%  Similarity=0.317  Sum_probs=189.5

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCC---CCC--CccEEEEcCccCCCc--
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA---IKP--TSGNAYVMNHSIRDS--  413 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~---~~~--~~G~i~~~g~~~~~~--  413 (566)
                      .+++++|+++.|+    .+.+|+|+||+|++||+++|+||||||||||+++|+|+   ++|  ++|+|.++|+++...  
T Consensus         2 ~~l~~~~~~~~~~----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~   77 (250)
T PRK14245          2 VKIDARDVNFWYG----DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGV   77 (250)
T ss_pred             cEEEEEEEEEEEC----CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccc
Confidence            4689999999996    46799999999999999999999999999999999997   455  589999999987531  


Q ss_pred             -hHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCC-chHHHHHHHHHHHHcCCCC----ccccCcCcCChhHHHHHH
Q psy7366         414 -MDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVP-SVLLNTIVNESLNKFALGH----YSDREVRTLSGGNKRKLS  487 (566)
Q Consensus       414 -~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~----~~~~~~~~LSgGqkqrv~  487 (566)
                       ....++.++|+||++.+++ .|+.||+.+.....+.. .....+.+.++++.+++.+    ..++++.+||||||||++
T Consensus        78 ~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~  156 (250)
T PRK14245         78 QVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLC  156 (250)
T ss_pred             cHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHH
Confidence             2345678999999998887 59999998765433322 2234456788999999853    468899999999999999


Q ss_pred             HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         488 TAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       488 la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      |||||+.+|++|||||||+|||+.++..+.+.|+++. +++|||++|||++++..+|||+++|++|++++.|+++++
T Consensus       157 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~  232 (250)
T PRK14245        157 IARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKI  232 (250)
T ss_pred             HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHH
Confidence            9999999999999999999999999999999999985 479999999999999999999999999999999988765

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.9e-45  Score=367.56  Aligned_cols=218  Identities=22%  Similarity=0.312  Sum_probs=190.6

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCC-----CccEEEEcCccCCC---
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIRD---  412 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~-----~~G~i~~~g~~~~~---  412 (566)
                      .+++++|+++.|+    ++.+|+|+||+|++||+++|+||||||||||+++|+|+.+|     ++|+|.++|+++..   
T Consensus         3 ~~l~~~~l~~~~~----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~   78 (251)
T PRK14270          3 IKMESKNLNLWYG----EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDV   78 (251)
T ss_pred             cEEEEEEeEEEEC----CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccc
Confidence            3689999999996    45799999999999999999999999999999999999875     79999999998753   


Q ss_pred             chHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCC-CchHHHHHHHHHHHHcCCC----CccccCcCcCChhHHHHHH
Q psy7366         413 SMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNV-PSVLLNTIVNESLNKFALG----HYSDREVRTLSGGNKRKLS  487 (566)
Q Consensus       413 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqrv~  487 (566)
                      .....++.++|+||++.+++ +|+.||+.+.....+. .......++.++++.+++.    +..++++.+||+|||||++
T Consensus        79 ~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~  157 (251)
T PRK14270         79 DVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLC  157 (251)
T ss_pred             cHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHH
Confidence            12345678999999998887 8999999876544333 2223345677889999874    3568899999999999999


Q ss_pred             HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         488 TAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       488 la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      |||||+.+|++|||||||+|||+.++..++++|+++.+ +.|||++|||++++..+|||+++|++|++++.|+++++
T Consensus       158 laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~  233 (251)
T PRK14270        158 IARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKI  233 (251)
T ss_pred             HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHH
Confidence            99999999999999999999999999999999999876 58999999999999999999999999999999988765

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=100.00  E-value=9e-46  Score=405.23  Aligned_cols=219  Identities=25%  Similarity=0.339  Sum_probs=195.3

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc--hHHhcC
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS--MDLVRS  419 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~--~~~~~~  419 (566)
                      +++++|+++.|+    ++++|+|+||+|.+||++||+||||||||||+|+|+|+++|++|+|.++|.++...  ....++
T Consensus         4 ~i~~~~l~~~~~----~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~   79 (501)
T PRK10762          4 LLQLKGIDKAFP----GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEA   79 (501)
T ss_pred             eEEEeeeEEEeC----CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhC
Confidence            689999999996    46799999999999999999999999999999999999999999999999987532  222356


Q ss_pred             ceEEEecCCCCCCCCCHHHHHHHHHHhc---C-CCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCC
Q psy7366         420 YIGYCPQFDALNDRLTPREHLEFYSRVR---N-VPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGN  495 (566)
Q Consensus       420 ~i~~v~q~~~l~~~~tv~e~l~~~~~~~---~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~  495 (566)
                      +++|+||++.+++.+|+.||+.++....   . .+....++++.++++.+++.+..++++.+|||||||||+|||||+.+
T Consensus        80 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~  159 (501)
T PRK10762         80 GIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFE  159 (501)
T ss_pred             CEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcC
Confidence            7999999999999999999998754321   1 12233345688999999999888999999999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         496 PPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       496 p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      |++|||||||+|||+.++..++++|++++++|.|||++|||++++..+||++++|++|+++..|+++++
T Consensus       160 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~  228 (501)
T PRK10762        160 SKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADL  228 (501)
T ss_pred             CCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcC
Confidence            999999999999999999999999999987799999999999999999999999999999999988765

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.9e-45  Score=370.97  Aligned_cols=219  Identities=25%  Similarity=0.349  Sum_probs=189.0

Q ss_pred             CCeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCC-----CCccEEEEcCccCCC--
Q psy7366         340 GDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIRD--  412 (566)
Q Consensus       340 ~~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~--  412 (566)
                      ..+++++|+++.|+    ++.+|+++||+|.+||+++|+||||||||||+++|+|+.+     |++|+|.++|+++..  
T Consensus        19 ~~~l~~~~l~~~~~----~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~   94 (268)
T PRK14248         19 EHILEVKDLSIYYG----EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSN   94 (268)
T ss_pred             CceEEEEEEEEEeC----CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccc
Confidence            35799999999996    4679999999999999999999999999999999999864     789999999998753  


Q ss_pred             -chHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCC-chHHHHHHHHHHHHcCCC----CccccCcCcCChhHHHHH
Q psy7366         413 -SMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVP-SVLLNTIVNESLNKFALG----HYSDREVRTLSGGNKRKL  486 (566)
Q Consensus       413 -~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqrv  486 (566)
                       .....+++++|+||++.+++. |+.||+.+........ .......+.++++.+++.    +..++++.+||||||||+
T Consensus        95 ~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl  173 (268)
T PRK14248         95 INVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRL  173 (268)
T ss_pred             ccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHH
Confidence             123456789999999988875 9999998764332221 122345567788888874    356889999999999999


Q ss_pred             HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         487 STAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       487 ~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      +|||||+.+|++|||||||+|||+.++..+.++|+++++ +.|||++|||++++..+|||+++|++|++++.|+++++
T Consensus       174 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~  250 (268)
T PRK14248        174 CIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQI  250 (268)
T ss_pred             HHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            999999999999999999999999999999999999865 68999999999999999999999999999999987764

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.7e-45  Score=371.31  Aligned_cols=218  Identities=21%  Similarity=0.313  Sum_probs=188.7

Q ss_pred             CCeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCC-----CCccEEEEcCccCCC--
Q psy7366         340 GDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIRD--  412 (566)
Q Consensus       340 ~~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~--  412 (566)
                      ..+|+++|+++.|+    ++.+|+|+||+|++||+++|+||||||||||+++|+|+++     |++|+|.++|+++..  
T Consensus        11 ~~~l~i~nl~~~~~----~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~   86 (269)
T PRK14259         11 NIIISLQNVTISYG----TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPR   86 (269)
T ss_pred             CceEEEEeEEEEEC----CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence            34799999999996    4679999999999999999999999999999999999987     689999999988742  


Q ss_pred             -chHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCC----CccccCcCcCChhHHHHHH
Q psy7366         413 -SMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALG----HYSDREVRTLSGGNKRKLS  487 (566)
Q Consensus       413 -~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqrv~  487 (566)
                       .....+++++|+||++.+++. |+.||+.+.....+... ...+.+.++++.+++.    +..++++.+||||||||++
T Consensus        87 ~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~  164 (269)
T PRK14259         87 VDPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARINGYTG-DMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLC  164 (269)
T ss_pred             CCHHHHhhceEEEccCCccchh-hHHHHHhhhhhhcCCcH-HHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHH
Confidence             234456789999999988874 99999987654333322 2345567788888763    4578899999999999999


Q ss_pred             HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEEC-----------CEEE
Q psy7366         488 TAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVN-----------GQFT  556 (566)
Q Consensus       488 la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~-----------G~i~  556 (566)
                      |||||+.+|++|||||||+|||+.++..++++|+++++ +.|||++|||++++..+||++++|++           |+++
T Consensus       165 laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~  243 (269)
T PRK14259        165 IARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLV  243 (269)
T ss_pred             HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceEE
Confidence            99999999999999999999999999999999999854 78999999999999999999999996           6789


Q ss_pred             EecCcccc
Q psy7366         557 CLGSATHL  564 (566)
Q Consensus       557 ~~g~~~~l  564 (566)
                      +.|+++++
T Consensus       244 ~~~~~~~~  251 (269)
T PRK14259        244 EFNETKKI  251 (269)
T ss_pred             EeCCHHHH
Confidence            99988765

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.8e-45  Score=366.20  Aligned_cols=217  Identities=24%  Similarity=0.373  Sum_probs=189.0

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCC-----CccEEEEcCccCCC---c
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIRD---S  413 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~-----~~G~i~~~g~~~~~---~  413 (566)
                      .|+++|+++.|+    ++++++|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|+++..   .
T Consensus         3 ~l~~~~l~~~~~----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~   78 (250)
T PRK14240          3 KISVKDLDLFYG----DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID   78 (250)
T ss_pred             eEEEEEEEEEEC----CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence            488999999996    45799999999999999999999999999999999999763     69999999998753   2


Q ss_pred             hHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCC-chHHHHHHHHHHHHcCCC----CccccCcCcCChhHHHHHHH
Q psy7366         414 MDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVP-SVLLNTIVNESLNKFALG----HYSDREVRTLSGGNKRKLST  488 (566)
Q Consensus       414 ~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqrv~l  488 (566)
                      ....++.++|+||++.+++ +|+.||+.+.....+.. .....+.+.++++.+++.    +..++++.+||||||||++|
T Consensus        79 ~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~l  157 (250)
T PRK14240         79 VNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCI  157 (250)
T ss_pred             hHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHH
Confidence            2345678999999998887 89999998765433322 223456678888888874    35688999999999999999


Q ss_pred             HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         489 AIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       489 a~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      ||||+.+|++|||||||+|||+.++..+.++|+++.+ +.|||++|||++++..+||++++|++|+++..|+++++
T Consensus       158 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~  232 (250)
T PRK14240        158 ARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDL  232 (250)
T ss_pred             HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence            9999999999999999999999999999999999854 79999999999999999999999999999999987764

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.9e-45  Score=366.46  Aligned_cols=218  Identities=22%  Similarity=0.331  Sum_probs=188.8

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCC--CC---CccEEEEcCccCCC---
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI--KP---TSGNAYVMNHSIRD---  412 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~--~~---~~G~i~~~g~~~~~---  412 (566)
                      .+++++|+++.|+    ++.+|+++||+|++||+++|+||||||||||+++|+|+.  +|   ++|+|.++|+++..   
T Consensus         4 ~~l~~~~l~~~~~----~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~   79 (252)
T PRK14239          4 PILQVSDLSVYYN----KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRT   79 (252)
T ss_pred             ceEEEEeeEEEEC----CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCccc
Confidence            3689999999996    457999999999999999999999999999999999985  36   59999999998743   


Q ss_pred             chHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCC-chHHHHHHHHHHHHcCCC----CccccCcCcCChhHHHHHH
Q psy7366         413 SMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVP-SVLLNTIVNESLNKFALG----HYSDREVRTLSGGNKRKLS  487 (566)
Q Consensus       413 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqrv~  487 (566)
                      ....+++.++|+||++.+++ +|+.||+.+.....+.. .......+.++++.+++.    +..++++.+|||||||||+
T Consensus        80 ~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~  158 (252)
T PRK14239         80 DTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVC  158 (252)
T ss_pred             chHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHH
Confidence            12345678999999998887 79999998765433332 222345677889998874    3468899999999999999


Q ss_pred             HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         488 TAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       488 la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      |||||+.+|++|||||||+|||+.++..++++|+++.+ +.|||++|||++++..+|||+++|++|++++.|+++++
T Consensus       159 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  234 (252)
T PRK14239        159 IARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQM  234 (252)
T ss_pred             HHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            99999999999999999999999999999999999865 68999999999999999999999999999999987765

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.6e-45  Score=403.62  Aligned_cols=220  Identities=24%  Similarity=0.318  Sum_probs=196.1

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCC--CccEEEEcCccCCCc-h-HH
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP--TSGNAYVMNHSIRDS-M-DL  416 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~-~-~~  416 (566)
                      .+|+++|+++.|+    ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|  ++|+|.++|.++... . ..
T Consensus         4 ~~l~~~nl~~~~~----~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~   79 (506)
T PRK13549          4 YLLEMKNITKTFG----GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDT   79 (506)
T ss_pred             ceEEEeeeEEEeC----CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHH
Confidence            3699999999996    46799999999999999999999999999999999999996  899999999988542 2 23


Q ss_pred             hcCceEEEecCCCCCCCCCHHHHHHHHHHhc--C-CCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHc
Q psy7366         417 VRSYIGYCPQFDALNDRLTPREHLEFYSRVR--N-VPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALL  493 (566)
Q Consensus       417 ~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~--~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~  493 (566)
                      .++.++|+||++.+++.+|+.||+.+.....  + .+.....+++.++++.+++.+..++++.+|||||||||+|||||+
T Consensus        80 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~  159 (506)
T PRK13549         80 ERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALN  159 (506)
T ss_pred             HHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHh
Confidence            4577999999998999999999998764322  1 222334556889999999988889999999999999999999999


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         494 GNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       494 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      .+|++|||||||+|||+.++..++++|.+++++|.|||++|||++++..+||++++|++|+++..|+++++
T Consensus       160 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~  230 (506)
T PRK13549        160 KQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGM  230 (506)
T ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccC
Confidence            99999999999999999999999999999987799999999999999999999999999999999988765

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=100.00  E-value=2.6e-45  Score=360.89  Aligned_cols=216  Identities=28%  Similarity=0.407  Sum_probs=187.7

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCC---CCccEEEEcCccCCCchHHhc
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK---PTSGNAYVMNHSIRDSMDLVR  418 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~  418 (566)
                      .+.++|+++.|++.++.+++|+|+||+|++||+++|+||||||||||+|+|+|+++   |++|+|.++|+++..  ...+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~--~~~~   80 (226)
T cd03234           3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP--DQFQ   80 (226)
T ss_pred             cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECCh--HHhc
Confidence            46789999999743223679999999999999999999999999999999999999   999999999988742  3456


Q ss_pred             CceEEEecCCCCCCCCCHHHHHHHHHHhcC---CCchHHHHHHHH-HHHHcCCCCccccCcCcCChhHHHHHHHHHHHcC
Q psy7366         419 SYIGYCPQFDALNDRLTPREHLEFYSRVRN---VPSVLLNTIVNE-SLNKFALGHYSDREVRTLSGGNKRKLSTAIALLG  494 (566)
Q Consensus       419 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~  494 (566)
                      ++++|+||++.+++.+|+.||+.+......   .........+.+ .++.+++.+..++.+.+|||||+||++|||||+.
T Consensus        81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~  160 (226)
T cd03234          81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLW  160 (226)
T ss_pred             ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHh
Confidence            789999999999999999999987644321   111122233445 8999999888889999999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCH-HHHHhhCCEEEEEECCEEEEec
Q psy7366         495 NPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM-EECEALCTKLTIMVNGQFTCLG  559 (566)
Q Consensus       495 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~-~~~~~~~drv~~l~~G~i~~~g  559 (566)
                      +|++|||||||+|||+.++..+.++|+++.++|.|+|++||++ +++..+||++++|++|++++.|
T Consensus       161 ~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g  226 (226)
T cd03234         161 DPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG  226 (226)
T ss_pred             CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence            9999999999999999999999999999877789999999998 6899999999999999998765

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.2e-45  Score=365.37  Aligned_cols=218  Identities=22%  Similarity=0.320  Sum_probs=188.8

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCC-----ccEEEEcCccCCC---c
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT-----SGNAYVMNHSIRD---S  413 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~-----~G~i~~~g~~~~~---~  413 (566)
                      +++++|+++.|+    ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|+     +|+|.++|+++..   .
T Consensus         4 ~l~~~~l~~~~~----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~   79 (252)
T PRK14272          4 LLSAQDVNIYYG----DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVD   79 (252)
T ss_pred             EEEEeeeEEEEC----CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccC
Confidence            688999999996    467999999999999999999999999999999999999874     8999999988753   2


Q ss_pred             hHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCC-chHHHHHHHHHHHHcCCC----CccccCcCcCChhHHHHHHH
Q psy7366         414 MDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVP-SVLLNTIVNESLNKFALG----HYSDREVRTLSGGNKRKLST  488 (566)
Q Consensus       414 ~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqrv~l  488 (566)
                      ....++.++|+||++.+++.+|+.||+.+.....+.. .....+.+.++++.+++.    +..++++.+||||||||++|
T Consensus        80 ~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~l  159 (252)
T PRK14272         80 PVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCI  159 (252)
T ss_pred             HHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHH
Confidence            2345678999999999999899999998754433222 222345566677777653    45688999999999999999


Q ss_pred             HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         489 AIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       489 a~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      ||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||+++++..+|||+++|++|++++.|+++++
T Consensus       160 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  234 (252)
T PRK14272        160 ARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQL  234 (252)
T ss_pred             HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            9999999999999999999999999999999999864 79999999999999999999999999999999988765

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2e-45  Score=403.52  Aligned_cols=220  Identities=27%  Similarity=0.357  Sum_probs=195.4

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc-hH-Hhc
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS-MD-LVR  418 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~-~~~  418 (566)
                      .+++++|+++.|+    ++.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++... .. ..+
T Consensus         4 ~~l~~~~l~~~~~----~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~   79 (510)
T PRK09700          4 PYISMAGIGKSFG----PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQ   79 (510)
T ss_pred             ceEEEeeeEEEcC----CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHH
Confidence            3699999999996    46799999999999999999999999999999999999999999999999988542 22 234


Q ss_pred             CceEEEecCCCCCCCCCHHHHHHHHHH----hcCC---CchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHH
Q psy7366         419 SYIGYCPQFDALNDRLTPREHLEFYSR----VRNV---PSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIA  491 (566)
Q Consensus       419 ~~i~~v~q~~~l~~~~tv~e~l~~~~~----~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~a  491 (566)
                      ++++|+||++.+++.+|+.||+.+...    ..+.   +.....+++.++++.+++.+..++++.+|||||||||+||||
T Consensus        80 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~a  159 (510)
T PRK09700         80 LGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKT  159 (510)
T ss_pred             CCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHH
Confidence            679999999999999999999976432    1111   122345678899999999988899999999999999999999


Q ss_pred             HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         492 LLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       492 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      |+.+|++|||||||+|||+.++..++++|++++++|+|||++|||++++..+||++++|++|++++.|+++++
T Consensus       160 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  232 (510)
T PRK09700        160 LMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDV  232 (510)
T ss_pred             HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhC
Confidence            9999999999999999999999999999999987899999999999999999999999999999999988765

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=7.1e-46  Score=342.95  Aligned_cols=220  Identities=23%  Similarity=0.348  Sum_probs=197.4

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCc
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSY  420 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~  420 (566)
                      +|+++|++++..    ++.+++++||++++||+++|+||||||||||||.|+|.+.|++|++.++|.++.. ....+.++
T Consensus         1 mi~a~nls~~~~----Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~   76 (259)
T COG4559           1 MIRAENLSYSLA----GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARH   76 (259)
T ss_pred             CeeeeeeEEEee----cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHH
Confidence            478899999886    6789999999999999999999999999999999999999999999999999866 34555677


Q ss_pred             eEEEecCCCCCCCCCHHHHHHHHHHhcCCC--chHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcC----
Q psy7366         421 IGYCPQFDALNDRLTPREHLEFYSRVRNVP--SVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLG----  494 (566)
Q Consensus       421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~----  494 (566)
                      -+.+||+..+-..+||.|.+.++..-++..  ..+..+.+.++|...++..+..+...+|||||||||.+||.|++    
T Consensus        77 raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~  156 (259)
T COG4559          77 RAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPP  156 (259)
T ss_pred             hhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCC
Confidence            899999988766679999999876544322  23556678999999999999999999999999999999999975    


Q ss_pred             --CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         495 --NPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       495 --~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                        ++++|+||||||+||+..+..++++.++++++|..|+.|-||++.+..||||+++|++|++++.|+|+++.
T Consensus       157 v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vl  229 (259)
T COG4559         157 VPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVL  229 (259)
T ss_pred             CCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhc
Confidence              34599999999999999999999999999999999999999999999999999999999999999998764

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.1e-45  Score=371.50  Aligned_cols=219  Identities=23%  Similarity=0.322  Sum_probs=189.5

Q ss_pred             CCeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCC-----CCccEEEEcCccCCC--
Q psy7366         340 GDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIRD--  412 (566)
Q Consensus       340 ~~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~--  412 (566)
                      ..+|+++|+++.|+    ++.+|+|+||+|.+||+++|+||||||||||+++|+|+.+     |++|+|.++|+++..  
T Consensus        37 ~~~l~~~~l~~~~~----~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~  112 (286)
T PRK14275         37 KPHVVAKNFSIYYG----EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKF  112 (286)
T ss_pred             ceEEEEeeeEEEEC----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcc
Confidence            34799999999996    4569999999999999999999999999999999999864     499999999988743  


Q ss_pred             -chHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCC-chHHHHHHHHHHHHcCCC----CccccCcCcCChhHHHHH
Q psy7366         413 -SMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVP-SVLLNTIVNESLNKFALG----HYSDREVRTLSGGNKRKL  486 (566)
Q Consensus       413 -~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqrv  486 (566)
                       ....++++++|+||++.+++. |+.||+.+.....+.. .....+.+.++++.+++.    +..++++.+|||||||||
T Consensus       113 ~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv  191 (286)
T PRK14275        113 TDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRL  191 (286)
T ss_pred             cchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHH
Confidence             122456789999999988875 9999998765433332 223345677888888873    456889999999999999


Q ss_pred             HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         487 STAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       487 ~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      +|||||+.+|++|||||||+|||+.+++.+.+.|+++++ +.|||++|||++++..+|||+++|++|+++..|+++++
T Consensus       192 ~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~  268 (286)
T PRK14275        192 CVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQL  268 (286)
T ss_pred             HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            999999999999999999999999999999999999865 68999999999999999999999999999999987665

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.6e-45  Score=364.86  Aligned_cols=217  Identities=22%  Similarity=0.354  Sum_probs=189.0

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCC-----CCccEEEEcCccCCC---c
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIRD---S  413 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~---~  413 (566)
                      +++++|+++.|+    .+++|+++||+|++||+++|+|+||||||||+++|+|+++     |++|+|.++|+++..   .
T Consensus         4 ~l~~~~l~~~~~----~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~   79 (251)
T PRK14251          4 IISAKDVHLSYG----NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD   79 (251)
T ss_pred             eEEEEeeEEEEC----CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccch
Confidence            689999999996    4679999999999999999999999999999999999997     479999999998743   2


Q ss_pred             hHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCc-hHHHHHHHHHHHHcCCC----CccccCcCcCChhHHHHHHH
Q psy7366         414 MDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPS-VLLNTIVNESLNKFALG----HYSDREVRTLSGGNKRKLST  488 (566)
Q Consensus       414 ~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqrv~l  488 (566)
                      ....++.++|++|++.+++ .|++||+.+.....+... ....+.+.++++.+++.    ...++++.+||||||||++|
T Consensus        80 ~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~l  158 (251)
T PRK14251         80 LVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICI  158 (251)
T ss_pred             HHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHH
Confidence            2345678999999998886 799999987654333322 22345677889999984    34688999999999999999


Q ss_pred             HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         489 AIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       489 a~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      ||||+.+|++|||||||+|||+.+++.+.+.|+++.+ +.|||++|||++++..+||++++|++|+++..|+++++
T Consensus       159 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  233 (251)
T PRK14251        159 ARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM  233 (251)
T ss_pred             HHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence            9999999999999999999999999999999999854 68999999999999999999999999999999987764

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.6e-45  Score=364.01  Aligned_cols=217  Identities=25%  Similarity=0.395  Sum_probs=189.5

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCC-----CccEEEEcCccCCCc---
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIRDS---  413 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~-----~~G~i~~~g~~~~~~---  413 (566)
                      +|+++|+++.|+    ++++|+++||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|.++...   
T Consensus         3 ~l~~~~l~~~~~----~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~   78 (250)
T PRK14262          3 IIEIENFSAYYG----EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLD   78 (250)
T ss_pred             eEEEEeeEEEeC----CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhh
Confidence            689999999996    45799999999999999999999999999999999999984     899999999887531   


Q ss_pred             hHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCC-chHHHHHHHHHHHHcCCCC----ccccCcCcCChhHHHHHHH
Q psy7366         414 MDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVP-SVLLNTIVNESLNKFALGH----YSDREVRTLSGGNKRKLST  488 (566)
Q Consensus       414 ~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~----~~~~~~~~LSgGqkqrv~l  488 (566)
                      ....++.++|+||++.+++ .|++||+.+.....+.. .....+.+.++++.+++..    ..++++.+||||||||++|
T Consensus        79 ~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~l  157 (250)
T PRK14262         79 VTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCI  157 (250)
T ss_pred             HHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHH
Confidence            2345678999999998887 89999998765433322 2233455778899988853    4688999999999999999


Q ss_pred             HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         489 AIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       489 a~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      ||||+.+|++|||||||+|||+.++..+.++|+++.+ +.|||++|||++++..+||++++|++|+++..|+++++
T Consensus       158 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  232 (250)
T PRK14262        158 ARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREI  232 (250)
T ss_pred             HHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence            9999999999999999999999999999999999865 78999999999999999999999999999999988765

>KOG0066|consensus

Probab=100.00  E-value=1.8e-46  Score=376.84  Aligned_cols=378  Identities=25%  Similarity=0.353  Sum_probs=273.2

Q ss_pred             hcCCChhhHHHHHHHHHHHcCCC-cccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHH
Q psy7366          59 VRNVPSVLLNTIVNESLNKFALG-HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAV  137 (566)
Q Consensus        59 ~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~  137 (566)
                      .+.+.....+.+++++|..+|+. +..+++...+|||+|-||+|||||...|-+|.|||||||||..++-||-+.|..++
T Consensus       380 LraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk  459 (807)
T KOG0066|consen  380 LRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK  459 (807)
T ss_pred             HHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh
Confidence            33344445677899999999997 46799999999999999999999999999999999999999999999999998875


Q ss_pred             hCCCEEEEecCChhHHHhhcCEEEEEeCCEEE-EecChhHHHhhccCcccc--CCCCCCCCccchhH-------------
Q psy7366         138 SEGRCVILTSHNMEECEALCTKLTIMVNGQFT-CLGSATHLKSKSMALPVS--GNDLGRGDPVRSEL-------------  201 (566)
Q Consensus       138 ~~g~tviiisH~~~~~~~~~d~i~vl~~G~i~-~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-------------  201 (566)
                      +   |++|+|||-.|++.+|+.|+-|++-++. +.|++.-++..... ...  ..++..++....++             
T Consensus       460 K---TLLIVSHDQgFLD~VCtdIIHLD~qkLhyYrGNY~~FKKmY~Q-k~~e~~K~yekQeK~LkelKa~GkS~KqAEkq  535 (807)
T KOG0066|consen  460 K---TLLIVSHDQGFLDSVCTDIIHLDNQKLHYYRGNYTLFKKMYAQ-KMQEHEKNYEKQEKQLKELKAEGKSAKQAEKQ  535 (807)
T ss_pred             h---eeEEEecccchHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCcchHHHHHH
Confidence            4   9999999999999999999999999985 45766555432110 000  00000000000000             


Q ss_pred             -HHhhccCC-CCccccCCCcccccccccccCCccchhhhhhhHHHHHHHHHHHHhhhhheeeccCCeeeeeeccchhhch
Q psy7366         202 -SRALNDGS-GSGIRNSARPEVSGFYNENIDGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNGTRLVAVNIWAWRII  279 (566)
Q Consensus       202 -~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (566)
                       .+.+.+.+ ..+.+++...+..                                                         
T Consensus       536 ~Ke~ltrKq~K~~~Knq~dded~---------------------------------------------------------  558 (807)
T KOG0066|consen  536 VKEQLTRKQKKGGKKNQNDDEDA---------------------------------------------------------  558 (807)
T ss_pred             HHHHHHHHHHhccccccCccccc---------------------------------------------------------
Confidence             00000000 0000000000000                                                         


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCcchhHH---HH---HHhhhcC-CCCCCeEEEeeeEEEe
Q psy7366         280 GKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNLHPVPVSLEEDDVR---KE---RERVEHG-ADSGDVLVVKRLFKIY  352 (566)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~-~~~~~~l~~~~l~~~y  352 (566)
                                                                ..++..   ++   +..+..+ .-.+++|-+.++++.|
T Consensus       559 ------------------------------------------gapELL~RpKEY~VkF~FPep~~L~PPvLGlH~VtFgy  596 (807)
T KOG0066|consen  559 ------------------------------------------GAPELLQRPKEYSVKFQFPEPTKLNPPVLGLHDVTFGY  596 (807)
T ss_pred             ------------------------------------------cCHHHHhCchheEEEEecCCCCCCCCCeeecccccccC
Confidence                                                      000000   00   0000001 1123578899999999


Q ss_pred             CCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCC--CC
Q psy7366         353 ANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFD--AL  430 (566)
Q Consensus       353 ~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~--~l  430 (566)
                      .   +.++.+.+++|-|.--..++|+||||.||||||++|.|-+.|..|+..-+          .|-+||++.|..  .+
T Consensus       597 ~---gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn----------hrL~iG~FdQh~~E~L  663 (807)
T KOG0066|consen  597 P---GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN----------HRLRIGWFDQHANEAL  663 (807)
T ss_pred             C---CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc----------ceeeeechhhhhHHhh
Confidence            6   47899999999999999999999999999999999999999999986433          245799999974  46


Q ss_pred             CCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccc-cCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCC
Q psy7366         431 NDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSD-REVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD  509 (566)
Q Consensus       431 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD  509 (566)
                      ....|..|++.-   ...++-    +.++..|..|||...++ -.+..||||||-||++|-.-+..|+||||||||++||
T Consensus       664 ~~Eetp~EyLqr---~FNlpy----q~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLD  736 (807)
T KOG0066|consen  664 NGEETPVEYLQR---KFNLPY----QEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLD  736 (807)
T ss_pred             ccccCHHHHHHH---hcCCCh----HHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcc
Confidence            666788877643   234443    34678899999975443 4689999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEE-ecCcc
Q psy7366         510 PGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTC-LGSAT  562 (566)
Q Consensus       510 ~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~-~g~~~  562 (566)
                      +++...+.+.|+++   ...|||||||-..+.+-.-.++|+.+..|-+ +|+.+
T Consensus       737 IESIDALaEAIney---~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~eIdGdFe  787 (807)
T KOG0066|consen  737 IESIDALAEAINEY---NGGVIMVSHDERLIVETDCNLWVVENQGIDEIDGDFE  787 (807)
T ss_pred             hhhHHHHHHHHHhc---cCcEEEEecccceeeecCceEEEEccCChhhccccHH
Confidence            99999999999887   6789999999988877666788888776644 34444

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.4e-45  Score=368.67  Aligned_cols=219  Identities=23%  Similarity=0.357  Sum_probs=188.6

Q ss_pred             CCeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCC-----CCccEEEEcCccCCC--
Q psy7366         340 GDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIRD--  412 (566)
Q Consensus       340 ~~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~--  412 (566)
                      .++++++|+++.|+    ++.+|+|+||+|++||+++|+|+||||||||+++|+|+++     |++|+|.++|+++..  
T Consensus        22 ~~~l~~~~l~~~~~----~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~   97 (271)
T PRK14238         22 KVVFDTQNLNLWYG----EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKS   97 (271)
T ss_pred             ceEEEEeeeEEEEC----CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccc
Confidence            34799999999996    4569999999999999999999999999999999999997     699999999988742  


Q ss_pred             -chHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCc-hHHHHHHHHHHHHcCC----CCccccCcCcCChhHHHHH
Q psy7366         413 -SMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPS-VLLNTIVNESLNKFAL----GHYSDREVRTLSGGNKRKL  486 (566)
Q Consensus       413 -~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~~~l----~~~~~~~~~~LSgGqkqrv  486 (566)
                       ....+++.++|+||++.+++ .|+.||+.+......... ......+.++++.+++    .+..++++.+||||||||+
T Consensus        98 ~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv  176 (271)
T PRK14238         98 YSVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRL  176 (271)
T ss_pred             ccHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHH
Confidence             23345678999999998887 499999987654333222 2223456677777753    4456889999999999999


Q ss_pred             HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         487 STAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       487 ~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      +|||||+.+|++|||||||+|||+.++..+.++|+++.+ +.|||++|||++++..+||++++|++|+++..|+++++
T Consensus       177 ~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~  253 (271)
T PRK14238        177 CIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKI  253 (271)
T ss_pred             HHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            999999999999999999999999999999999999865 79999999999999999999999999999999988765

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=100.00  E-value=2.9e-45  Score=401.67  Aligned_cols=216  Identities=23%  Similarity=0.348  Sum_probs=194.5

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc-hHH-hc
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS-MDL-VR  418 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~-~~  418 (566)
                      ++|+++|+++.|+    ++.+|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|+++... ... .+
T Consensus        10 ~~l~~~~l~~~~~----~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~   85 (510)
T PRK15439         10 PLLCARSISKQYS----GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQ   85 (510)
T ss_pred             ceEEEEeEEEEeC----CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHh
Confidence            3699999999996    46799999999999999999999999999999999999999999999999987542 222 34


Q ss_pred             CceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCE
Q psy7366         419 SYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPL  498 (566)
Q Consensus       419 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~l  498 (566)
                      ..+||+||++.+++.+|+.||+.+....    ....++++.++++.+++.+..++++.+|||||||||+|||||+.+|++
T Consensus        86 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~----~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~l  161 (510)
T PRK15439         86 LGIYLVPQEPLLFPNLSVKENILFGLPK----RQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRI  161 (510)
T ss_pred             CCEEEEeccCccCCCCcHHHHhhccccc----chHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence            5799999999999999999999875321    123346688999999999888999999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         499 IFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       499 llLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      |||||||+|||+.++..++++|++++++|.|||++|||++++..+||++++|++|++++.|+++++
T Consensus       162 llLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~  227 (510)
T PRK15439        162 LILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADL  227 (510)
T ss_pred             EEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHc
Confidence            999999999999999999999999987899999999999999999999999999999999988765

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.3e-45  Score=336.68  Aligned_cols=215  Identities=25%  Similarity=0.367  Sum_probs=196.9

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCce
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYI  421 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i  421 (566)
                      ++.+++++.+|...  ...+|+|+|++|.+||.++++|||||||||||++++|+.+|+.|+|.++|++++.+..    .-
T Consensus         3 ~l~~~~~sl~y~g~--~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPga----er   76 (259)
T COG4525           3 MLNVSHLSLSYEGK--PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGA----ER   76 (259)
T ss_pred             eeehhheEEecCCc--chhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCc----cc
Confidence            46788999999732  2459999999999999999999999999999999999999999999999999876422    35


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEE
Q psy7366         422 GYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFL  501 (566)
Q Consensus       422 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllL  501 (566)
                      |.|||++.++|.+++.+|+.|+.++.++++....+++.+.+..+||.+.-++++.+|||||||||.|||||+.+|++|+|
T Consensus        77 gvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlL  156 (259)
T COG4525          77 GVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLL  156 (259)
T ss_pred             eeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEee
Confidence            89999999999999999999999999999888888999999999999988999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEccCHHHHHhhCCEEEEEE--CCEEEEecCcc
Q psy7366         502 DEPTSGMDPGARRFLWTCIERAVS-EGRCVILTSHNMEECEALCTKLTIMV--NGQFTCLGSAT  562 (566)
Q Consensus       502 DEPt~gLD~~~~~~l~~~l~~~~~-~g~tvl~vsHd~~~~~~~~drv~~l~--~G~i~~~g~~~  562 (566)
                      |||+++||.-+++.+.++|-++.+ .|+.+++||||++|+.-+++|+++|+  .|+|+..-+++
T Consensus       157 DEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~d  220 (259)
T COG4525         157 DEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPLD  220 (259)
T ss_pred             cCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCCC
Confidence            999999999999999999988754 59999999999999999999999997  57888776554

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=100.00  E-value=4.3e-45  Score=357.79  Aligned_cols=212  Identities=23%  Similarity=0.373  Sum_probs=185.9

Q ss_pred             EEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc----hHHhc
Q psy7366         343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS----MDLVR  418 (566)
Q Consensus       343 l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~----~~~~~  418 (566)
                      ++++|+++.|+.+.+.+.+|+++||++++|++++|+||||||||||+++|+|+++|++|+|+++|.++...    ....+
T Consensus         2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~   81 (220)
T TIGR02982         2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR   81 (220)
T ss_pred             EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence            78999999996322226799999999999999999999999999999999999999999999999987431    12356


Q ss_pred             CceEEEecCCCCCCCCCHHHHHHHHHHhcC-CCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCC
Q psy7366         419 SYIGYCPQFDALNDRLTPREHLEFYSRVRN-VPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPP  497 (566)
Q Consensus       419 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~  497 (566)
                      +.++|+||++.+++.+|+.||+.+...... .........+.++++.+++.+..++++.+||+|||||++|||||+.+|+
T Consensus        82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~  161 (220)
T TIGR02982        82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPK  161 (220)
T ss_pred             hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence            789999999999988999999987654332 2333445678899999999988899999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEccCHHHHHhhCCEEEEEECCEE
Q psy7366         498 LIFLDEPTSGMDPGARRFLWTCIERAVS-EGRCVILTSHNMEECEALCTKLTIMVNGQF  555 (566)
Q Consensus       498 lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~tvl~vsHd~~~~~~~~drv~~l~~G~i  555 (566)
                      +|||||||+|||+.++..++++|+++.+ .++|||++|||++. ..+||++++|++|++
T Consensus       162 illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~-~~~~d~v~~l~~g~~  219 (220)
T TIGR02982       162 LVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRI-LDVADRIVHMEDGKL  219 (220)
T ss_pred             EEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HhhCCEEEEEECCEE
Confidence            9999999999999999999999999876 48999999999985 579999999999986

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=100.00  E-value=6.2e-45  Score=364.33  Aligned_cols=219  Identities=26%  Similarity=0.410  Sum_probs=188.0

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCcc-----CCC-chH
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS-----IRD-SMD  415 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~-----~~~-~~~  415 (566)
                      +|+++|+++.|+    ++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|++     +.. ...
T Consensus         3 ~l~~~~l~~~~~----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~   78 (253)
T TIGR02323         3 LLQVSGLSKSYG----GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEA   78 (253)
T ss_pred             eEEEeeeEEEeC----CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHH
Confidence            689999999996    4568999999999999999999999999999999999999999999999976     533 111


Q ss_pred             ----HhcCceEEEecCCC--CCCCCCHHHHHHHHHHhcC-CCchHHHHHHHHHHHHcCCC-CccccCcCcCChhHHHHHH
Q psy7366         416 ----LVRSYIGYCPQFDA--LNDRLTPREHLEFYSRVRN-VPSVLLNTIVNESLNKFALG-HYSDREVRTLSGGNKRKLS  487 (566)
Q Consensus       416 ----~~~~~i~~v~q~~~--l~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqrv~  487 (566)
                          ..++.++|++|++.  +++.+|+.+|+.+...... .........+.++++.+++. ...++++.+|||||||||+
T Consensus        79 ~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~  158 (253)
T TIGR02323        79 ERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQ  158 (253)
T ss_pred             HHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHH
Confidence                13467999999974  4566789999865322111 11122345678999999997 4789999999999999999


Q ss_pred             HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         488 TAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       488 la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      |||||+.+|++|||||||+|||+.+++.++++|+++.++ |.|||++||+++++..+||++++|++|++++.|+++++
T Consensus       159 laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~~~~  236 (253)
T TIGR02323       159 IARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQV  236 (253)
T ss_pred             HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCHHHH
Confidence            999999999999999999999999999999999998764 89999999999999999999999999999999987765

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.4e-45  Score=365.96  Aligned_cols=219  Identities=23%  Similarity=0.303  Sum_probs=190.9

Q ss_pred             CCeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCC-----CCccEEEEcCccCCC--
Q psy7366         340 GDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIRD--  412 (566)
Q Consensus       340 ~~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~--  412 (566)
                      ..+++++|+++.|+    ++++|+|+||+|.+||+++|+||||||||||+++|+|+++     |++|+|.++|+++..  
T Consensus        18 ~~~l~~~nl~~~~~----~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~   93 (267)
T PRK14237         18 EIALSTKDLHVYYG----KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKE   93 (267)
T ss_pred             CeEEEEeeEEEEEC----CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEccccc
Confidence            34799999999996    4679999999999999999999999999999999999996     589999999998743  


Q ss_pred             -chHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCC-CchHHHHHHHHHHHHcCCC----CccccCcCcCChhHHHHH
Q psy7366         413 -SMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNV-PSVLLNTIVNESLNKFALG----HYSDREVRTLSGGNKRKL  486 (566)
Q Consensus       413 -~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqrv  486 (566)
                       .....++.++|+||++.+++ .|+.||+.+.....+. ........+.++++.+++.    +..++++.+|||||+||+
T Consensus        94 ~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl  172 (267)
T PRK14237         94 INVYEMRKHIGMVFQRPNPFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRL  172 (267)
T ss_pred             CChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHH
Confidence             12345678999999988887 5999999876443322 2223445678889999884    356889999999999999


Q ss_pred             HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         487 STAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       487 ~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      +|||||+.+|++|||||||+|||+.++..+.++|+++.+ +.|||++||+++++..+||++++|++|++++.|+++++
T Consensus       173 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  249 (267)
T PRK14237        173 CIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK-NYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNI  249 (267)
T ss_pred             HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence            999999999999999999999999999999999999854 79999999999999999999999999999999998765

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=100.00  E-value=2.8e-45  Score=355.46  Aligned_cols=201  Identities=24%  Similarity=0.408  Sum_probs=177.7

Q ss_pred             EeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC---c--hHHhcC
Q psy7366         345 VKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD---S--MDLVRS  419 (566)
Q Consensus       345 ~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~---~--~~~~~~  419 (566)
                      ++|+++.|+    ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..   .  ....++
T Consensus         1 i~~l~~~~~----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~   76 (206)
T TIGR03608         1 LKNISKKFG----DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRRE   76 (206)
T ss_pred             CcceEEEEC----CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHh
Confidence            468999996    4579999999999999999999999999999999999999999999999998642   1  123467


Q ss_pred             ceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEE
Q psy7366         420 YIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLI  499 (566)
Q Consensus       420 ~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~ll  499 (566)
                      .++|++|++.+++.+|+.||+.+.....+.......+.+.++++.+++.+..++++.+||||||||++|||||+.+|++|
T Consensus        77 ~i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~ll  156 (206)
T TIGR03608        77 KLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLI  156 (206)
T ss_pred             CeeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence            89999999999998999999988654433334444567889999999988889999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEE
Q psy7366         500 FLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIM  550 (566)
Q Consensus       500 lLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l  550 (566)
                      ||||||+|||+.+++.+.+.|+++.++|.|||++||+++.+ .+||++++|
T Consensus       157 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~-~~~d~i~~l  206 (206)
T TIGR03608       157 LADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVA-KQADRVIEL  206 (206)
T ss_pred             EEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-hhcCEEEeC
Confidence            99999999999999999999999877799999999999976 579999875

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=100.00  E-value=7.2e-45  Score=363.92  Aligned_cols=215  Identities=23%  Similarity=0.316  Sum_probs=187.8

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCC----CccEEEEcCccCCCchHHh
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP----TSGNAYVMNHSIRDSMDLV  417 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~----~~G~i~~~g~~~~~~~~~~  417 (566)
                      .|+++|+++.|+     +++|+|+||+|++||+++|+||||||||||+++|+|+++|    ++|+|.++|+++.. ....
T Consensus         4 ~l~~~~l~~~~~-----~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~-~~~~   77 (254)
T PRK10418          4 QIELRNIALQAA-----QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAP-CALR   77 (254)
T ss_pred             EEEEeCeEEEec-----cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccc-cccc
Confidence            689999999993     4699999999999999999999999999999999999999    99999999998753 1223


Q ss_pred             cCceEEEecCCC--CCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCC---ccccCcCcCChhHHHHHHHHHHH
Q psy7366         418 RSYIGYCPQFDA--LNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGH---YSDREVRTLSGGNKRKLSTAIAL  492 (566)
Q Consensus       418 ~~~i~~v~q~~~--l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~LSgGqkqrv~la~al  492 (566)
                      ++.++|+||++.  +.+.+|+.+|+.+.....+...  ....+.++++.+++.+   ..++++.+|||||||||+|||||
T Consensus        78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral  155 (254)
T PRK10418         78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPA--DDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALAL  155 (254)
T ss_pred             cceEEEEecCCccccCccccHHHHHHHHHHHcCCCh--HHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHH
Confidence            457999999974  4456799998866543333222  2356789999999976   56899999999999999999999


Q ss_pred             cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         493 LGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       493 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      +.+|++|||||||+|||+.++..++++|+++.++ |.|||++||+++++..+|||+++|++|+++..|+++++
T Consensus       156 ~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~  228 (254)
T PRK10418        156 LCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETL  228 (254)
T ss_pred             hcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence            9999999999999999999999999999998765 89999999999999999999999999999999988765

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.5e-45  Score=362.89  Aligned_cols=217  Identities=19%  Similarity=0.304  Sum_probs=188.9

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCC-----ccEEEEcCccCCC---c
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT-----SGNAYVMNHSIRD---S  413 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~-----~G~i~~~g~~~~~---~  413 (566)
                      +++++|+++.|+    ++.+|+++||+|.+|++++|+||||||||||+++|+|+++|+     +|+|.++|+++..   .
T Consensus         4 ~l~~~~l~~~~~----~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~   79 (251)
T PRK14249          4 KIKIRGVNFFYH----KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLD   79 (251)
T ss_pred             eEEEEEEEEEEC----CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccC
Confidence            689999999996    457999999999999999999999999999999999999997     6999999988743   1


Q ss_pred             hHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCC-chHHHHHHHHHHHHcCCC----CccccCcCcCChhHHHHHHH
Q psy7366         414 MDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVP-SVLLNTIVNESLNKFALG----HYSDREVRTLSGGNKRKLST  488 (566)
Q Consensus       414 ~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqrv~l  488 (566)
                      ....++.++|+||++.+++. |+.||+.+.....+.. .....+.+.++++.+++.    +..++++.+|||||||||+|
T Consensus        80 ~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~l  158 (251)
T PRK14249         80 VVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCI  158 (251)
T ss_pred             hHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHH
Confidence            23456789999999988875 9999998765433322 222345567778888864    45688999999999999999


Q ss_pred             HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         489 AIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       489 a~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      ||||+.+|++|||||||+|||+.++..+.++|+++. ++.|||++|||++++..+||++++|++|++++.|+++++
T Consensus       159 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  233 (251)
T PRK14249        159 ARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEI  233 (251)
T ss_pred             HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHH
Confidence            999999999999999999999999999999999984 589999999999999999999999999999999988765

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.6e-45  Score=368.75  Aligned_cols=218  Identities=22%  Similarity=0.357  Sum_probs=189.5

Q ss_pred             CCeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCC-----CCccEEEEcCccCCC--
Q psy7366         340 GDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIRD--  412 (566)
Q Consensus       340 ~~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~--  412 (566)
                      ..+|+++|+++.|+    ++.+|+|+||+|.+||+++|+||||||||||+++|+|+++     |++|+|.++|+++..  
T Consensus        37 ~~~l~i~~l~~~~~----~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~  112 (285)
T PRK14254         37 ETVIEARDLNVFYG----DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDAD  112 (285)
T ss_pred             CceEEEEEEEEEEC----CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccc
Confidence            34799999999996    4579999999999999999999999999999999999987     689999999988742  


Q ss_pred             -chHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCC----CccccCcCcCChhHHHHHH
Q psy7366         413 -SMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALG----HYSDREVRTLSGGNKRKLS  487 (566)
Q Consensus       413 -~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqrv~  487 (566)
                       .....+++++|+||++.+++. |+.||+.+.....+.+. .....+.++++.+++.    +..++++.+|||||||||+
T Consensus       113 ~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~  190 (285)
T PRK14254        113 VDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGYDG-DIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLC  190 (285)
T ss_pred             cchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcCCcH-HHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHH
Confidence             223456789999999988875 99999987654433332 3345678899999985    3568899999999999999


Q ss_pred             HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEE-EEECCEEEEecCcccc
Q psy7366         488 TAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLT-IMVNGQFTCLGSATHL  564 (566)
Q Consensus       488 la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~-~l~~G~i~~~g~~~~l  564 (566)
                      |||||+.+|+||||||||+|||+.+++.+.++|++++++ .|||++|||++++..+|||++ +|++|++++.|+++++
T Consensus       191 LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~-~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~  267 (285)
T PRK14254        191 IARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE-YTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKI  267 (285)
T ss_pred             HHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence            999999999999999999999999999999999999764 899999999999999999975 5799999999987654

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.6e-45  Score=363.70  Aligned_cols=216  Identities=20%  Similarity=0.336  Sum_probs=186.7

Q ss_pred             EEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCC-----CCccEEEEcCccCCCc---h
Q psy7366         343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIRDS---M  414 (566)
Q Consensus       343 l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~~---~  414 (566)
                      -+++|+++.|+    ++++|+|+||+|.+||+++|+||||||||||+++|+|+.+     |++|+|.++|+++...   .
T Consensus         6 ~~~~~l~~~~~----~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~   81 (251)
T PRK14244          6 ASVKNLNLWYG----SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNV   81 (251)
T ss_pred             EEeeeEEEEEC----CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccch
Confidence            36889999996    4679999999999999999999999999999999999986     4799999999887431   2


Q ss_pred             HHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCC--chHHHHHHHHHHHHcCCCC----ccccCcCcCChhHHHHHHH
Q psy7366         415 DLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVP--SVLLNTIVNESLNKFALGH----YSDREVRTLSGGNKRKLST  488 (566)
Q Consensus       415 ~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~--~~~~~~~~~~~l~~~~l~~----~~~~~~~~LSgGqkqrv~l  488 (566)
                      ...+++++|+||++.+++. |+.||+.+.....+..  .......+.++++.+++.+    ..++++.+||||||||++|
T Consensus        82 ~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~l  160 (251)
T PRK14244         82 VLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCI  160 (251)
T ss_pred             HHHhhhEEEEecCcccccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHH
Confidence            2356789999999988876 9999998764333221  2233456778899999864    4578899999999999999


Q ss_pred             HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         489 AIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       489 a~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      ||||+.+|++|||||||+|||+.++..+.+.|+++. +|+|||++|||++++..+||++++|++|++++.|+++++
T Consensus       161 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  235 (251)
T PRK14244        161 ARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI  235 (251)
T ss_pred             HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence            999999999999999999999999999999999985 489999999999999999999999999999999987765

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=4e-45  Score=353.80  Aligned_cols=202  Identities=27%  Similarity=0.371  Sum_probs=181.2

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCce
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYI  421 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i  421 (566)
                      +++++|+++.|+    ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.......++++
T Consensus         1 ~l~~~~l~~~~~----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~   76 (204)
T PRK13538          1 MLEARNLACERD----ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDL   76 (204)
T ss_pred             CeEEEEEEEEEC----CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhhe
Confidence            478999999996    4579999999999999999999999999999999999999999999999998764334456789


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEE
Q psy7366         422 GYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFL  501 (566)
Q Consensus       422 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllL  501 (566)
                      +|++|++.+++.+|+.||+.+.....+.   ...+.+.++++.+++.+..++++.+||||||||++|||||+.+|++|||
T Consensus        77 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~---~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llll  153 (204)
T PRK13538         77 LYLGHQPGIKTELTALENLRFYQRLHGP---GDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWIL  153 (204)
T ss_pred             EEeCCccccCcCCcHHHHHHHHHHhcCc---cHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence            9999999889999999999886544321   2345678899999998888999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEE
Q psy7366         502 DEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIM  550 (566)
Q Consensus       502 DEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l  550 (566)
                      ||||+|||+.++..++++|++++++|.|||++|||++++..+.+|++++
T Consensus       154 DEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~  202 (204)
T PRK13538        154 DEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL  202 (204)
T ss_pred             eCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence            9999999999999999999998777899999999999999977888777

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=100.00  E-value=1e-44  Score=365.45  Aligned_cols=223  Identities=26%  Similarity=0.336  Sum_probs=193.1

Q ss_pred             eEEEeeeEEEeCCc-----CCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc---
Q psy7366         342 VLVVKRLFKIYANS-----KGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS---  413 (566)
Q Consensus       342 ~l~~~~l~~~y~~~-----~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~---  413 (566)
                      +|+++|+++.|+..     ..++.+|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++...   
T Consensus         3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~   82 (268)
T PRK10419          3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA   82 (268)
T ss_pred             eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence            58999999999620     0135799999999999999999999999999999999999999999999999887532   


Q ss_pred             -hHHhcCceEEEecCC--CCCCCCCHHHHHHHHHHh-cCCCchHHHHHHHHHHHHcCCC-CccccCcCcCChhHHHHHHH
Q psy7366         414 -MDLVRSYIGYCPQFD--ALNDRLTPREHLEFYSRV-RNVPSVLLNTIVNESLNKFALG-HYSDREVRTLSGGNKRKLST  488 (566)
Q Consensus       414 -~~~~~~~i~~v~q~~--~l~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqrv~l  488 (566)
                       ....++.++|+||++  .+++..|+.+|+.+.... ...........+.++++.+++. ...++++.+||||||||++|
T Consensus        83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~l  162 (268)
T PRK10419         83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCL  162 (268)
T ss_pred             HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHH
Confidence             123567899999997  466778999998764332 2233333445688999999997 57899999999999999999


Q ss_pred             HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         489 AIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       489 a~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      ||||+.+|++|||||||+|||+.++..+.++|++++++ |.|||++||+++++..+||++++|++|++++.|+++++
T Consensus       163 aral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~  239 (268)
T PRK10419        163 ARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDK  239 (268)
T ss_pred             HHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCChhhc
Confidence            99999999999999999999999999999999998765 89999999999999999999999999999999988775

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=100.00  E-value=3.8e-45  Score=360.52  Aligned_cols=199  Identities=25%  Similarity=0.373  Sum_probs=176.2

Q ss_pred             eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHH
Q psy7366         362 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLE  441 (566)
Q Consensus       362 l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~  441 (566)
                      |+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++....    ...+|++|++.+++.+|+.||+.
T Consensus         1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~----~~~~~v~q~~~l~~~~tv~e~l~   76 (230)
T TIGR01184         1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPG----PDRMVVFQNYSLLPWLTVRENIA   76 (230)
T ss_pred             CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCC----hhheEEecCcccCCCCCHHHHHH
Confidence            57899999999999999999999999999999999999999999999875421    12489999999999999999998


Q ss_pred             HHHHh--cCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy7366         442 FYSRV--RNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTC  519 (566)
Q Consensus       442 ~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~  519 (566)
                      +....  .........+.+.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~  156 (230)
T TIGR01184        77 LAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEE  156 (230)
T ss_pred             HHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHH
Confidence            75321  1233334455678999999999888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         520 IERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       520 l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      |.+++++ |+|||++|||++++..+||++++|++|++++.|+..++
T Consensus       157 l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~  202 (230)
T TIGR01184       157 LMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV  202 (230)
T ss_pred             HHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence            9998765 89999999999999999999999999999998876443

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.5e-45  Score=362.49  Aligned_cols=217  Identities=20%  Similarity=0.314  Sum_probs=188.7

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCC-----CccEEEEcCccCCC--ch
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIRD--SM  414 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~-----~~G~i~~~g~~~~~--~~  414 (566)
                      +++++|+++.|+    ++.+|+++||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|.++..  ..
T Consensus         3 ~l~~~~l~~~~~----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~   78 (249)
T PRK14253          3 KFNIENLDLFYG----ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV   78 (249)
T ss_pred             eEEEeccEEEEC----CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccch
Confidence            588999999996    46799999999999999999999999999999999999986     59999999988742  23


Q ss_pred             HHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCC-chHHHHHHHHHHHHcCCC----CccccCcCcCChhHHHHHHHH
Q psy7366         415 DLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVP-SVLLNTIVNESLNKFALG----HYSDREVRTLSGGNKRKLSTA  489 (566)
Q Consensus       415 ~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqrv~la  489 (566)
                      ...++.++|+||++.+++ .|+.||+.+.....+.. .....+.+.++++.+++.    +..++++.+|||||||||+||
T Consensus        79 ~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la  157 (249)
T PRK14253         79 ADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIA  157 (249)
T ss_pred             HHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHH
Confidence            455678999999998887 79999998764333322 223345677788888874    356788999999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         490 IALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       490 ~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      |||+.+|++|||||||+|||+.++..++++|+++.+ +.|||++||+++++..+|||+++|++|+++..|+++++
T Consensus       158 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  231 (249)
T PRK14253        158 RTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVI  231 (249)
T ss_pred             HHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            999999999999999999999999999999999866 58999999999999999999999999999999987664

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=100.00  E-value=5e-45  Score=358.49  Aligned_cols=214  Identities=26%  Similarity=0.355  Sum_probs=185.0

Q ss_pred             CCeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhc
Q psy7366         340 GDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVR  418 (566)
Q Consensus       340 ~~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~  418 (566)
                      ..+|+++|+++.|+    ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .....+
T Consensus         5 ~~~i~~~~l~~~~~----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~   80 (225)
T PRK10247          5 SPLLQLQNVGYLAG----DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYR   80 (225)
T ss_pred             CceEEEeccEEeeC----CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHH
Confidence            34799999999996    4679999999999999999999999999999999999999999999999988754 333456


Q ss_pred             CceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCC-CccccCcCcCChhHHHHHHHHHHHcCCCC
Q psy7366         419 SYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALG-HYSDREVRTLSGGNKRKLSTAIALLGNPP  497 (566)
Q Consensus       419 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqrv~la~al~~~p~  497 (566)
                      ++++|+||++.+++ .|+.||+.+........  .....+.++++.+++. ...++++.+|||||+|||+|||||+.+|+
T Consensus        81 ~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~  157 (225)
T PRK10247         81 QQVSYCAQTPTLFG-DTVYDNLIFPWQIRNQQ--PDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPK  157 (225)
T ss_pred             hccEEEeccccccc-ccHHHHHHhHHhhcCCC--hHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence            78999999998887 49999998754433221  1234577899999996 57799999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEE-CCEEEEecCc
Q psy7366         498 LIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMV-NGQFTCLGSA  561 (566)
Q Consensus       498 lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~-~G~i~~~g~~  561 (566)
                      +|||||||+|||+.+++.+.++|+++.++ |.|||++|||++++. .||++++|+ ++..+.+|+.
T Consensus       158 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~-~~d~i~~l~~~~~~~~~~~~  222 (225)
T PRK10247        158 VLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN-HADKVITLQPHAGEMQEARY  222 (225)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH-hCCEEEEEecccchHhhhhh
Confidence            99999999999999999999999998764 899999999999996 699999994 5556666654

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.5e-44  Score=365.02  Aligned_cols=218  Identities=24%  Similarity=0.335  Sum_probs=190.3

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCC-----CCccEEEEcCccCCC---
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIRD---  412 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~---  412 (566)
                      .+++++|+++.|+    ++.+|+|+||+|++||+++|+||||||||||+++|+|+++     |++|+|.++|.++..   
T Consensus        24 ~~l~~~nl~~~~~----~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~   99 (272)
T PRK14236         24 TALEVRNLNLFYG----DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV   99 (272)
T ss_pred             cEEEEEEEEEEEC----CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence            4799999999996    4579999999999999999999999999999999999987     489999999998753   


Q ss_pred             chHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCC-chHHHHHHHHHHHHcCCC----CccccCcCcCChhHHHHHH
Q psy7366         413 SMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVP-SVLLNTIVNESLNKFALG----HYSDREVRTLSGGNKRKLS  487 (566)
Q Consensus       413 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqrv~  487 (566)
                      .....++.++|+||++.+++. |+.||+.+.....+.. .....+.+.++++.+++.    +..++++.+|||||||||+
T Consensus       100 ~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~  178 (272)
T PRK14236        100 DVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLV  178 (272)
T ss_pred             CHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHH
Confidence            233456789999999988886 9999998764433322 222345677888998885    3568899999999999999


Q ss_pred             HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         488 TAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       488 la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      |||||+.+|++|||||||+|||+.++..++++|+++++ +.|||++||+++++..+||++++|++|+++..|+++++
T Consensus       179 laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  254 (272)
T PRK14236        179 IARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTL  254 (272)
T ss_pred             HHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHH
Confidence            99999999999999999999999999999999999976 78999999999999999999999999999999987764

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.2e-46  Score=344.04  Aligned_cols=220  Identities=23%  Similarity=0.381  Sum_probs=204.6

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCc
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSY  420 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~  420 (566)
                      +++++|++|.|+    .+.+++++|++|++|.+++|+|||||||||||.+++.++++++|+|+++|.++.. ....+.++
T Consensus         1 MI~i~nv~K~y~----~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~   76 (252)
T COG4604           1 MITIENVSKSYG----TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKK   76 (252)
T ss_pred             CeeehhhhHhhC----CEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHH
Confidence            478999999997    6889999999999999999999999999999999999999999999999999976 45667788


Q ss_pred             eEEEecCCCCCCCCCHHHHHHHHHHh--cCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCE
Q psy7366         421 IGYCPQFDALNDRLTPREHLEFYSRV--RNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPL  498 (566)
Q Consensus       421 i~~v~q~~~l~~~~tv~e~l~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~l  498 (566)
                      ++.+-|+..+...+||+|-+.|+.-.  .+....+++..++++++.++|.++.+++..+||||||||..||+.++++.+.
T Consensus        77 lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdy  156 (252)
T COG4604          77 LSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDY  156 (252)
T ss_pred             HHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcE
Confidence            99999999888899999999885322  3455677788899999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         499 IFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       499 llLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      ++||||.++||......+++.|++++++ |+||++|-||++++..++|+|+.|++|+++.+|+++++.
T Consensus       157 vlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii  224 (252)
T COG4604         157 VLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEII  224 (252)
T ss_pred             EEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhc
Confidence            9999999999999999999999999987 999999999999999999999999999999999999863

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.1e-44  Score=363.93  Aligned_cols=218  Identities=22%  Similarity=0.348  Sum_probs=190.4

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCC-----ccEEEEcCccCCC---c
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT-----SGNAYVMNHSIRD---S  413 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~-----~G~i~~~g~~~~~---~  413 (566)
                      +|+++|+++.|+    +..+|+|+||+|++||+++|+|+||||||||+++|+|+++|+     +|+|.++|+++..   .
T Consensus         7 ~l~~~nl~~~~~----~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~   82 (261)
T PRK14258          7 AIKVNNLSFYYD----TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVN   82 (261)
T ss_pred             eEEEeeEEEEeC----CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccc
Confidence            689999999996    456999999999999999999999999999999999999985     8999999988642   2


Q ss_pred             hHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCC-CchHHHHHHHHHHHHcCCC----CccccCcCcCChhHHHHHHH
Q psy7366         414 MDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNV-PSVLLNTIVNESLNKFALG----HYSDREVRTLSGGNKRKLST  488 (566)
Q Consensus       414 ~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqrv~l  488 (566)
                      ...+++.++|+||++.+++ .|+.||+.+.....+. +.....+.+.++++.+++.    +..++++.+|||||+||++|
T Consensus        83 ~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~l  161 (261)
T PRK14258         83 LNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCI  161 (261)
T ss_pred             hHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHH
Confidence            2345678999999988887 8999999876433332 2223345678889999874    35688999999999999999


Q ss_pred             HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEccCHHHHHhhCCEEEEEEC-----CEEEEecCcc
Q psy7366         489 AIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS-EGRCVILTSHNMEECEALCTKLTIMVN-----GQFTCLGSAT  562 (566)
Q Consensus       489 a~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~tvl~vsHd~~~~~~~~drv~~l~~-----G~i~~~g~~~  562 (566)
                      ||||+.+|++|||||||+|||+.++..+.+.|+++++ +|.|||++|||++++.++|||+++|++     |++++.|+++
T Consensus       162 aral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~  241 (261)
T PRK14258        162 ARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFGLTK  241 (261)
T ss_pred             HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEeCCHH
Confidence            9999999999999999999999999999999999865 489999999999999999999999999     9999999987


Q ss_pred             cc
Q psy7366         563 HL  564 (566)
Q Consensus       563 ~l  564 (566)
                      ++
T Consensus       242 ~~  243 (261)
T PRK14258        242 KI  243 (261)
T ss_pred             HH
Confidence            65

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.2e-44  Score=366.09  Aligned_cols=218  Identities=23%  Similarity=0.314  Sum_probs=190.1

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCC-----CccEEEEcCccCCCc--
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIRDS--  413 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~-----~~G~i~~~g~~~~~~--  413 (566)
                      .+|+++|+++.|+    ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|.++...  
T Consensus        20 ~~l~i~nl~~~~~----~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~   95 (276)
T PRK14271         20 PAMAAVNLTLGFA----GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD   95 (276)
T ss_pred             cEEEEeeEEEEEC----CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccch
Confidence            3689999999997    46799999999999999999999999999999999999985     799999999887542  


Q ss_pred             hHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcC-CCchHHHHHHHHHHHHcCCCC----ccccCcCcCChhHHHHHHH
Q psy7366         414 MDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRN-VPSVLLNTIVNESLNKFALGH----YSDREVRTLSGGNKRKLST  488 (566)
Q Consensus       414 ~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~LSgGqkqrv~l  488 (566)
                      ....+.+++|+||++.+|+ +|+++|+.+...... .........+.++++.+++..    ..++.+.+|||||+||++|
T Consensus        96 ~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~L  174 (276)
T PRK14271         96 VLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCL  174 (276)
T ss_pred             hHHHhhheEEeccCCccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHH
Confidence            2345678999999998887 799999987543222 223333445678889999863    4578899999999999999


Q ss_pred             HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         489 AIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       489 a~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      ||||+.+|++|||||||+|||+.+++.+.+.|+++++ +.|||++|||++++..+|||+++|++|++++.|+++++
T Consensus       175 Aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~  249 (276)
T PRK14271        175 ARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQL  249 (276)
T ss_pred             HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            9999999999999999999999999999999999876 58999999999999999999999999999999988765

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=100.00  E-value=4.9e-45  Score=359.84  Aligned_cols=203  Identities=23%  Similarity=0.330  Sum_probs=178.6

Q ss_pred             eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCC----CccEEEEcCccCCCchHHhcCceEEEecCCC--CCCCC
Q psy7366         361 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP----TSGNAYVMNHSIRDSMDLVRSYIGYCPQFDA--LNDRL  434 (566)
Q Consensus       361 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~----~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~--l~~~~  434 (566)
                      +|+|+||+|++|++++|+||||||||||+++|+|+++|    ++|+|.++|+++... ...++.++|++|++.  +++.+
T Consensus         1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~-~~~~~~i~~~~q~~~~~~~~~~   79 (230)
T TIGR02770         1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL-SIRGRHIATIMQNPRTAFNPLF   79 (230)
T ss_pred             CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh-hhhhheeEEEecCchhhcCccc
Confidence            47899999999999999999999999999999999999    899999999987532 222357999999984  55678


Q ss_pred             CHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCC---CccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHH
Q psy7366         435 TPREHLEFYSRVRNVPSVLLNTIVNESLNKFALG---HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPG  511 (566)
Q Consensus       435 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~---~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~  511 (566)
                      |+.+|+.+.....+.......+.+.++++.+++.   +..++++.+|||||||||+|||||+.+|++|||||||+|||+.
T Consensus        80 t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~  159 (230)
T TIGR02770        80 TMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVV  159 (230)
T ss_pred             CHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHH
Confidence            9999987654433322333456688999999997   5678999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         512 ARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       512 ~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      ++..+.+.|++++++ |.|||++||+++++..+||++++|++|++++.|+++++
T Consensus       160 ~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  213 (230)
T TIGR02770       160 NQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEI  213 (230)
T ss_pred             HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            999999999998765 89999999999999999999999999999999988776

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.3e-44  Score=363.02  Aligned_cols=217  Identities=26%  Similarity=0.360  Sum_probs=189.0

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCC-----CccEEEEcCccCCC---c
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIRD---S  413 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~-----~~G~i~~~g~~~~~---~  413 (566)
                      +++++|+++.|+    ++.+|+|+||+|.+||+++|+|+||||||||+|+|+|+++|     ++|+|.++|+++..   .
T Consensus         7 ~l~~~~l~~~~~----~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~   82 (259)
T PRK14260          7 AIKVKDLSFYYN----TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRIN   82 (259)
T ss_pred             eEEEEEEEEEEC----CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccc
Confidence            689999999996    45799999999999999999999999999999999999985     48999999998743   2


Q ss_pred             hHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcC-CCchHHHHHHHHHHHHcCCC----CccccCcCcCChhHHHHHHH
Q psy7366         414 MDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRN-VPSVLLNTIVNESLNKFALG----HYSDREVRTLSGGNKRKLST  488 (566)
Q Consensus       414 ~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqrv~l  488 (566)
                      ....+.+++|+||++.+|+ +|+.||+.+.....+ .+.....+.+.++++.+++.    +..++++.+|||||||||+|
T Consensus        83 ~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~l  161 (259)
T PRK14260         83 INRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCI  161 (259)
T ss_pred             hHhhhhheEEEecccccCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHH
Confidence            2345678999999998887 899999987644332 22333345677889998873    46788999999999999999


Q ss_pred             HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEE-----CCEEEEecCccc
Q psy7366         489 AIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMV-----NGQFTCLGSATH  563 (566)
Q Consensus       489 a~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~-----~G~i~~~g~~~~  563 (566)
                      ||||+.+|++|||||||+|||+.++..++++|+++.+ +.|||++|||++++..+||++++|+     +|++++.|++++
T Consensus       162 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~  240 (259)
T PRK14260        162 ARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVTTQ  240 (259)
T ss_pred             HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeCCHHH
Confidence            9999999999999999999999999999999999865 6899999999999999999999998     599999999876


Q ss_pred             c
Q psy7366         564 L  564 (566)
Q Consensus       564 l  564 (566)
                      +
T Consensus       241 ~  241 (259)
T PRK14260        241 I  241 (259)
T ss_pred             H
Confidence            5

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.7e-44  Score=361.17  Aligned_cols=217  Identities=27%  Similarity=0.356  Sum_probs=188.6

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCC-----CccEEEEcCccCCCc---
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIRDS---  413 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~-----~~G~i~~~g~~~~~~---  413 (566)
                      +|+++|+++.|+    ++.+|+|+||+|++||+++|+||||||||||+++|+|+.+|     ++|+|.++|+++...   
T Consensus         6 ~i~~~~l~~~~~----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~   81 (253)
T PRK14261          6 ILSTKNLNLWYG----EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGAD   81 (253)
T ss_pred             eEEEeeeEEEEC----CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccc
Confidence            689999999996    46799999999999999999999999999999999999763     489999999987542   


Q ss_pred             hHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCC-chHHHHHHHHHHHHcCCC----CccccCcCcCChhHHHHHHH
Q psy7366         414 MDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVP-SVLLNTIVNESLNKFALG----HYSDREVRTLSGGNKRKLST  488 (566)
Q Consensus       414 ~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqrv~l  488 (566)
                      ....++.++|+||++.+++. |++||+.+.....+.. ....+..+.++++.+++.    ...++++.+||||||||++|
T Consensus        82 ~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~l  160 (253)
T PRK14261         82 VVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCI  160 (253)
T ss_pred             hhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHH
Confidence            23456789999999988875 9999998765443322 223345677888888874    34688999999999999999


Q ss_pred             HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         489 AIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       489 a~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      ||||+.+|+++||||||+|||+.+++.+.++|+++++ +.|||++||+++++..+||++++|++|+++..|+++++
T Consensus       161 aral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~  235 (253)
T PRK14261        161 ARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQI  235 (253)
T ss_pred             HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHH
Confidence            9999999999999999999999999999999999866 58999999999999999999999999999999987765

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.9e-44  Score=364.54  Aligned_cols=218  Identities=20%  Similarity=0.299  Sum_probs=187.5

Q ss_pred             CCeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCC-----CccEEEEcCccCCC--
Q psy7366         340 GDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIRD--  412 (566)
Q Consensus       340 ~~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~-----~~G~i~~~g~~~~~--  412 (566)
                      ..+|+++|+++.|+    ++.+|+++||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|+++..  
T Consensus        18 ~~~l~~~nl~~~~~----~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~   93 (274)
T PRK14265         18 HSVFEVEGVKVFYG----GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQ   93 (274)
T ss_pred             CceEEEeeEEEEeC----CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEeccccc
Confidence            44899999999996    45799999999999999999999999999999999999863     68999999998743  


Q ss_pred             -chHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCC----CccccCcCcCChhHHHHHH
Q psy7366         413 -SMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALG----HYSDREVRTLSGGNKRKLS  487 (566)
Q Consensus       413 -~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqrv~  487 (566)
                       ....++++++|+||++.+++. |+.+|+.+......... ...+.+.++++.+++.    +..++++.+|||||||||+
T Consensus        94 ~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~  171 (274)
T PRK14265         94 INSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANGYKG-NLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLC  171 (274)
T ss_pred             chhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcCchH-HHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHH
Confidence             223456789999999988875 99999987543322211 2234466778888763    4567899999999999999


Q ss_pred             HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEE---------CCEEEEe
Q psy7366         488 TAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMV---------NGQFTCL  558 (566)
Q Consensus       488 la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~---------~G~i~~~  558 (566)
                      |||||+.+|++|||||||+|||+.++..+.++|.++++ +.|||++|||++++..+|||+++|+         +|++++.
T Consensus       172 LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~  250 (274)
T PRK14265        172 IARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEF  250 (274)
T ss_pred             HHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEEe
Confidence            99999999999999999999999999999999999865 6899999999999999999999998         8999999


Q ss_pred             cCcccc
Q psy7366         559 GSATHL  564 (566)
Q Consensus       559 g~~~~l  564 (566)
                      |+++++
T Consensus       251 g~~~~~  256 (274)
T PRK14265        251 SPTEQM  256 (274)
T ss_pred             CCHHHH
Confidence            998765

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.7e-44  Score=359.50  Aligned_cols=218  Identities=22%  Similarity=0.349  Sum_probs=187.2

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCC--C---CccEEEEcCccCCC---
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK--P---TSGNAYVMNHSIRD---  412 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--~---~~G~i~~~g~~~~~---  412 (566)
                      .+++++|+++.|+    .+.+|+++||+|.+||+++|+||||||||||+++|+|+++  |   ++|+|.++|+++..   
T Consensus         4 ~~l~~~~l~~~~~----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~   79 (252)
T PRK14255          4 KIITSSDVHLFYG----KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNE   79 (252)
T ss_pred             ceEEEEeEEEEEC----CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccc
Confidence            4689999999997    4679999999999999999999999999999999999975  4   58999999998742   


Q ss_pred             chHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCc-hHHHHHHHHHHHHcCCC----CccccCcCcCChhHHHHHH
Q psy7366         413 SMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPS-VLLNTIVNESLNKFALG----HYSDREVRTLSGGNKRKLS  487 (566)
Q Consensus       413 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqrv~  487 (566)
                      .....++.++|+||++.+++ .|+.+|+.+.....+... ......+.+.++.+++.    +..++++.+||||||||++
T Consensus        80 ~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~  158 (252)
T PRK14255         80 DVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVC  158 (252)
T ss_pred             cHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHH
Confidence            22345678999999998887 699999987654333222 22234566778888763    4568899999999999999


Q ss_pred             HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         488 TAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       488 la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      |||||+.+|++|||||||+|||+.++..+.++|+++.+ +.|||++|||++++..+||++++|++|+++..|++.++
T Consensus       159 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  234 (252)
T PRK14255        159 IARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQM  234 (252)
T ss_pred             HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            99999999999999999999999999999999999866 58999999999999999999999999999999987654

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=100.00  E-value=3.4e-45  Score=362.67  Aligned_cols=215  Identities=21%  Similarity=0.361  Sum_probs=179.9

Q ss_pred             EEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCce
Q psy7366         343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSYI  421 (566)
Q Consensus       343 l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~i  421 (566)
                      ++++|+++.|+.  +.+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .....++.+
T Consensus         1 i~~~~l~~~~~~--~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i   78 (237)
T cd03252           1 ITFEHVRFRYKP--DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQV   78 (237)
T ss_pred             CEEEEEEEecCC--CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcE
Confidence            468999999963  13569999999999999999999999999999999999999999999999988753 233456789


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHH-----HHHHHHHHHc--CCCCccccCcCcCChhHHHHHHHHHHHcC
Q psy7366         422 GYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLN-----TIVNESLNKF--ALGHYSDREVRTLSGGNKRKLSTAIALLG  494 (566)
Q Consensus       422 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgGqkqrv~la~al~~  494 (566)
                      +|+||++.+++ .|+.||+.+...  ........     ..+.++++.+  ++....++++.+|||||||||+|||||+.
T Consensus        79 ~~~~q~~~~~~-~tv~~nl~~~~~--~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~  155 (237)
T cd03252          79 GVVLQENVLFN-RSIRDNIALADP--GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIH  155 (237)
T ss_pred             EEEcCCchhcc-chHHHHhhccCC--CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhh
Confidence            99999988775 699999976431  11111111     1123445555  55556678999999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         495 NPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       495 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      +|++|||||||+|||+.++..+.+.|+++.+ |.|||++|||++++. .||++++|++|++++.|+++++
T Consensus       156 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~~~~~~~  223 (237)
T cd03252         156 NPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLSTVK-NADRIIVMEKGRIVEQGSHDEL  223 (237)
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHHHH-hCCEEEEEECCEEEEEcCHHHH
Confidence            9999999999999999999999999999864 899999999999996 5999999999999999988765

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.1e-44  Score=381.12  Aligned_cols=216  Identities=25%  Similarity=0.333  Sum_probs=199.0

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC--chHHhc
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD--SMDLVR  418 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~--~~~~~~  418 (566)
                      +.++++|++|+|+    ..++|+++||+|++||++||+|.||||||||+|+|+|.++|++|+|.++|+++..  ......
T Consensus         7 ~ll~~~~i~K~Fg----gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~   82 (500)
T COG1129           7 PLLELRGISKSFG----GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALA   82 (500)
T ss_pred             ceeeeecceEEcC----CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHh
Confidence            4689999999997    6789999999999999999999999999999999999999999999999998853  445567


Q ss_pred             CceEEEecCCCCCCCCCHHHHHHHHHHhc----CCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcC
Q psy7366         419 SYIGYCPQFDALNDRLTPREHLEFYSRVR----NVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLG  494 (566)
Q Consensus       419 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~  494 (566)
                      ..|+.|+|+.+++|++||.||+.+.....    -++++...+.+.++|+++++....+.++.+||.||||.|.|||||..
T Consensus        83 ~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~  162 (500)
T COG1129          83 AGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSF  162 (500)
T ss_pred             CCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhc
Confidence            89999999999999999999997754322    24556778889999999999655899999999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecC
Q psy7366         495 NPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS  560 (566)
Q Consensus       495 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~  560 (566)
                      +++||||||||++|+....+.+++++++++++|.+||+|||.++++.++|||+.||++|+.+...+
T Consensus       163 ~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~  228 (500)
T COG1129         163 DARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP  228 (500)
T ss_pred             CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence            999999999999999999999999999999999999999999999999999999999999999887

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.6e-44  Score=360.16  Aligned_cols=219  Identities=23%  Similarity=0.353  Sum_probs=190.3

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcC------ccCCC-c
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN------HSIRD-S  413 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g------~~~~~-~  413 (566)
                      +++.++|++++|+    ++.+|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|      .++.. .
T Consensus         9 ~~i~~~~~~~~~~----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~   84 (257)
T PRK14246          9 DVFNISRLYLYIN----DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID   84 (257)
T ss_pred             hheeeeeEEEecC----CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCC
Confidence            4699999999997    56799999999999999999999999999999999999999997776665      44432 2


Q ss_pred             hHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCC-CchHHHHHHHHHHHHcCCC----CccccCcCcCChhHHHHHHH
Q psy7366         414 MDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNV-PSVLLNTIVNESLNKFALG----HYSDREVRTLSGGNKRKLST  488 (566)
Q Consensus       414 ~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqrv~l  488 (566)
                      ....+..++|+||++.+++.+|+.+|+.+.....+. +.......+.++++.+++.    +..++.+..||+|||||++|
T Consensus        85 ~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~l  164 (257)
T PRK14246         85 AIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTI  164 (257)
T ss_pred             HHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHH
Confidence            334567899999999999999999999876543222 2233445678899999985    35678999999999999999


Q ss_pred             HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         489 AIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       489 a~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      ||||+.+|+++||||||+|||+.++..+.+.|.++.+ +.|||++||+++++..+||++++|++|++++.|+++++
T Consensus       165 aral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~  239 (257)
T PRK14246        165 ARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI  239 (257)
T ss_pred             HHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence            9999999999999999999999999999999999865 69999999999999999999999999999999988765

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.4e-44  Score=404.32  Aligned_cols=224  Identities=24%  Similarity=0.326  Sum_probs=194.4

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCC---------
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR---------  411 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~---------  411 (566)
                      ++|+++|+++.|+...+..++|+|+||+|.+||++||+||||||||||+++|+|+++|++|+|.++|..+.         
T Consensus        11 ~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~   90 (623)
T PRK10261         11 DVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIEL   90 (623)
T ss_pred             ceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccccc
Confidence            47999999999963222357999999999999999999999999999999999999999999999886431         


Q ss_pred             -C-ch---HHh-cCceEEEecCC--CCCCCCCHHHHHHHHHHhc-CCCchHHHHHHHHHHHHcCCCC---ccccCcCcCC
Q psy7366         412 -D-SM---DLV-RSYIGYCPQFD--ALNDRLTPREHLEFYSRVR-NVPSVLLNTIVNESLNKFALGH---YSDREVRTLS  479 (566)
Q Consensus       412 -~-~~---~~~-~~~i~~v~q~~--~l~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~LS  479 (566)
                       . ..   ... +++||||+|++  .+++.+||.||+.+..... +.+.....+++.++++.+||.+   .+++++.+||
T Consensus        91 ~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LS  170 (623)
T PRK10261         91 SEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLS  170 (623)
T ss_pred             ccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCC
Confidence             1 11   122 35799999998  6788899999998876542 4444455677889999999953   5789999999


Q ss_pred             hhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEe
Q psy7366         480 GGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCL  558 (566)
Q Consensus       480 gGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~  558 (566)
                      |||||||+|||||+.+|++|||||||++||+.++..++++|++++++ |+|||+||||++++..+||||++|++|++++.
T Consensus       171 gGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~~~  250 (623)
T PRK10261        171 GGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVET  250 (623)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeeccc
Confidence            99999999999999999999999999999999999999999999865 99999999999999999999999999999999


Q ss_pred             cCcccc
Q psy7366         559 GSATHL  564 (566)
Q Consensus       559 g~~~~l  564 (566)
                      |+++++
T Consensus       251 g~~~~~  256 (623)
T PRK10261        251 GSVEQI  256 (623)
T ss_pred             CCHHHh
Confidence            887654

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=2e-44  Score=351.46  Aligned_cols=203  Identities=25%  Similarity=0.378  Sum_probs=182.2

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCc
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSY  420 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~  420 (566)
                      .+++++|+++.|+    ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...  ..++.
T Consensus        10 ~~l~~~~l~~~~~----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~--~~~~~   83 (214)
T PRK13543         10 PLLAAHALAFSRN----EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG--DRSRF   83 (214)
T ss_pred             ceEEEeeEEEecC----CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch--hhhhc
Confidence            4799999999996    45799999999999999999999999999999999999999999999999887542  23457


Q ss_pred             eEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEE
Q psy7366         421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIF  500 (566)
Q Consensus       421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lll  500 (566)
                      ++|++|++.+++.+|+.||+.+.....+.   ...+.+.++++.+++.+..++++.+||||||||++|||+++.+|++||
T Consensus        84 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll  160 (214)
T PRK13543         84 MAYLGHLPGLKADLSTLENLHFLCGLHGR---RAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWL  160 (214)
T ss_pred             eEEeecCcccccCCcHHHHHHHHHHhcCC---cHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            99999999888889999999876544322   223456788999999888899999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEEC
Q psy7366         501 LDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVN  552 (566)
Q Consensus       501 LDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~  552 (566)
                      |||||+|||+.+++.+.+.|++++++|.|||++|||++++.++||++++|+.
T Consensus       161 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~  212 (214)
T PRK13543        161 LDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA  212 (214)
T ss_pred             EeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence            9999999999999999999999888899999999999999999999999863

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=100.00  E-value=1.3e-44  Score=382.87  Aligned_cols=224  Identities=25%  Similarity=0.363  Sum_probs=197.4

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCC----ccEEEEcCccCCCc----
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT----SGNAYVMNHSIRDS----  413 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~----~G~i~~~g~~~~~~----  413 (566)
                      +|+|+||++.|....+...+++||||+|.+||++||+|.+||||||+.++|.|++++.    +|+|.++|+++...    
T Consensus         5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~   84 (539)
T COG1123           5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE   84 (539)
T ss_pred             eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence            7999999999975433346999999999999999999999999999999999999987    89999999977431    


Q ss_pred             hH-HhcCceEEEecCC--CCCCCCCHHHHHHHHHHhcC-CCchHHHHHHHHHHHHcCCCCccc--cCcCcCChhHHHHHH
Q psy7366         414 MD-LVRSYIGYCPQFD--ALNDRLTPREHLEFYSRVRN-VPSVLLNTIVNESLNKFALGHYSD--REVRTLSGGNKRKLS  487 (566)
Q Consensus       414 ~~-~~~~~i~~v~q~~--~l~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~--~~~~~LSgGqkqrv~  487 (566)
                      .. ...+.|+|+||+|  .+.|-+||.+.+.-....+. ....+..+++.++|+.++|.+...  ++|++|||||||||+
T Consensus        85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~  164 (539)
T COG1123          85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVM  164 (539)
T ss_pred             HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHH
Confidence            12 2347899999997  36677999988876555544 346677888999999999976544  599999999999999


Q ss_pred             HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         488 TAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       488 la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      ||+||+.+|++||+||||++||+..+.+|+++|++++++ |.++|+||||+..+.++||||+||++|++++.|+++++.
T Consensus       165 iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~  243 (539)
T COG1123         165 IAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEIL  243 (539)
T ss_pred             HHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHHHH
Confidence            999999999999999999999999999999999999865 999999999999999999999999999999999998763

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.1e-44  Score=362.53  Aligned_cols=217  Identities=20%  Similarity=0.279  Sum_probs=187.1

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCC-----CCccEEEEcCccCCC---
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIRD---  412 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~---  412 (566)
                      .+|+++|+++.|+    ++++|+|+||+|++||+++|+||||||||||+++|+|+++     |++|+|.++|+++..   
T Consensus         9 ~~l~i~~v~~~~~----~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~   84 (264)
T PRK14243          9 TVLRTENLNVYYG----SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDV   84 (264)
T ss_pred             eEEEEeeeEEEEC----CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEcccccc
Confidence            4799999999996    4579999999999999999999999999999999999986     479999999988742   


Q ss_pred             chHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCC----CccccCcCcCChhHHHHHHH
Q psy7366         413 SMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALG----HYSDREVRTLSGGNKRKLST  488 (566)
Q Consensus       413 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqrv~l  488 (566)
                      .....+++++|++|++.+++ .|+.||+.+.....+.. ....+.+.++++.+++.    ...++++.+||||||||++|
T Consensus        85 ~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~l  162 (264)
T PRK14243         85 DPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARINGYK-GDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCI  162 (264)
T ss_pred             ChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhcCcc-hHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHH
Confidence            23345678999999998887 49999998765432222 12234566778887773    35678999999999999999


Q ss_pred             HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEE---------CCEEEEec
Q psy7366         489 AIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMV---------NGQFTCLG  559 (566)
Q Consensus       489 a~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~---------~G~i~~~g  559 (566)
                      ||||+.+|++|||||||+|||+.++..++++|.++.+ +.|||++|||++++..+|||+++|+         +|++++.|
T Consensus       163 aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~  241 (264)
T PRK14243        163 ARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEFD  241 (264)
T ss_pred             HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEeC
Confidence            9999999999999999999999999999999999866 5899999999999999999999998         89999999


Q ss_pred             Ccccc
Q psy7366         560 SATHL  564 (566)
Q Consensus       560 ~~~~l  564 (566)
                      +++++
T Consensus       242 ~~~~~  246 (264)
T PRK14243        242 RTEKI  246 (264)
T ss_pred             CHHHH
Confidence            98775

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.8e-44  Score=364.47  Aligned_cols=217  Identities=24%  Similarity=0.411  Sum_probs=185.0

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCce
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYI  421 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i  421 (566)
                      .|+++|+++.|+.   ++.+|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|+++..  ...+..+
T Consensus         6 ~l~~~~l~~~~~~---~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~--~~~~~~i   80 (272)
T PRK15056          6 GIVVNDVTVTWRN---GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ--ALQKNLV   80 (272)
T ss_pred             eEEEEeEEEEecC---CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH--hhccceE
Confidence            5899999999952   4579999999999999999999999999999999999999999999999987642  1123469


Q ss_pred             EEEecCCCCC--CCCCHHHHHHHHHH----hcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCC
Q psy7366         422 GYCPQFDALN--DRLTPREHLEFYSR----VRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGN  495 (566)
Q Consensus       422 ~~v~q~~~l~--~~~tv~e~l~~~~~----~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~  495 (566)
                      +|+||++.+.  ...++.+|+.+...    ....+.......+.++++.+++.+..++++.+||||||||++|||||+.+
T Consensus        81 ~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~  160 (272)
T PRK15056         81 AYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQ  160 (272)
T ss_pred             EEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence            9999997642  23468888754311    01112223345678899999998888999999999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         496 PPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       496 p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      |++|||||||+|||+.+++.+.++|++++++|.|||++|||++++..+||+++++ +|+++..|+++++
T Consensus       161 p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~  228 (272)
T PRK15056        161 GQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETT  228 (272)
T ss_pred             CCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhc
Confidence            9999999999999999999999999999877999999999999999999999777 8999999988765

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=100.00  E-value=2e-44  Score=353.92  Aligned_cols=202  Identities=28%  Similarity=0.376  Sum_probs=176.7

Q ss_pred             EEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceE
Q psy7366         343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIG  422 (566)
Q Consensus       343 l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~  422 (566)
                      +.++++++.|+    ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|+++|+++..          
T Consensus        23 l~~~~~~~~~~----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~----------   88 (224)
T cd03220          23 LGILGRKGEVG----EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSL----------   88 (224)
T ss_pred             hhhhhhhhhcC----CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchh----------
Confidence            67888888886    5779999999999999999999999999999999999999999999999976421          


Q ss_pred             EEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEe
Q psy7366         423 YCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLD  502 (566)
Q Consensus       423 ~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLD  502 (566)
                       ..+...+++.+|+.||+.+.....+.......+.+.++++.+++.+..++++.+||||||||++|||||+.+|++||||
T Consensus        89 -~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllD  167 (224)
T cd03220          89 -LGLGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLID  167 (224)
T ss_pred             -hcccccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence             1112345567899999987655443333334456788899999998889999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEec
Q psy7366         503 EPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLG  559 (566)
Q Consensus       503 EPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g  559 (566)
                      |||+|||+.++..+++.|++++++|.|||++|||++++..+||++++|++|++++.|
T Consensus       168 EP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g  224 (224)
T cd03220         168 EVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG  224 (224)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence            999999999999999999998777899999999999999999999999999998765

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=4.8e-45  Score=323.09  Aligned_cols=219  Identities=25%  Similarity=0.375  Sum_probs=202.9

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccC--CC-----ch
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI--RD-----SM  414 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~--~~-----~~  414 (566)
                      .|.++++++.|+    ...+|-||+|+.+.||.+.++||+|+|||||++.+.=+.-|.+|+..+.|...  +.     ..
T Consensus         2 sirv~~in~~yg----~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i   77 (242)
T COG4161           2 SIQLNGINCFYG----AHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAI   77 (242)
T ss_pred             ceEEcccccccc----cchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHH
Confidence            378999999997    57799999999999999999999999999999999999999999999988643  21     24


Q ss_pred             HHhcCceEEEecCCCCCCCCCHHHHHHH-HHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHc
Q psy7366         415 DLVRSYIGYCPQFDALNDRLTPREHLEF-YSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALL  493 (566)
Q Consensus       415 ~~~~~~i~~v~q~~~l~~~~tv~e~l~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~  493 (566)
                      ..+|+.+|+|||..+++|.+||.||+.- +.+..++++.+...++.++|+++.|.++.|+.|-.|||||+|||+|||||+
T Consensus        78 ~~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralm  157 (242)
T COG4161          78 RDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALM  157 (242)
T ss_pred             HHHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHh
Confidence            5678999999999999999999999754 566778888888999999999999999999999999999999999999999


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         494 GNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       494 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      .+|++|++||||++|||+-..++.++|++++..|.|=+++||+.+.+.+.+.+|+.|.+|+|++.|+.+.+
T Consensus       158 mkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~f  228 (242)
T COG4161         158 MEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF  228 (242)
T ss_pred             cCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999987654

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=100.00  E-value=7.9e-45  Score=359.31  Aligned_cols=215  Identities=24%  Similarity=0.402  Sum_probs=181.9

Q ss_pred             EEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCce
Q psy7366         343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSYI  421 (566)
Q Consensus       343 l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~i  421 (566)
                      ++++|+++.|+..  +.++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|+++.. .....++.+
T Consensus         1 i~~~~l~~~~~~~--~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i   78 (234)
T cd03251           1 VEFKNVTFRYPGD--GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQI   78 (234)
T ss_pred             CEEEEEEEEeCCC--CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhE
Confidence            4689999999621  1369999999999999999999999999999999999999999999999988753 233456789


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHH-----HHHHHHHHc--CCCCccccCcCcCChhHHHHHHHHHHHcC
Q psy7366         422 GYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNT-----IVNESLNKF--ALGHYSDREVRTLSGGNKRKLSTAIALLG  494 (566)
Q Consensus       422 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGqkqrv~la~al~~  494 (566)
                      +|+||++.+++ .|++||+.+....  ........     .+.++++.+  ++....++++.+||||||||++|||||+.
T Consensus        79 ~~~~q~~~~~~-~tv~enl~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~  155 (234)
T cd03251          79 GLVSQDVFLFN-DTVAENIAYGRPG--ATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLK  155 (234)
T ss_pred             EEeCCCCeecc-ccHHHHhhccCCC--CCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhc
Confidence            99999998876 6999999765321  11111111     234556666  66667788999999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         495 NPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       495 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      +|++|||||||+|||+.+++.+.+.|+++.+ +.|||++|||++++.. ||++++|++|+++..|+++++
T Consensus       156 ~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~-~d~v~~l~~G~i~~~~~~~~~  223 (234)
T cd03251         156 DPPILILDEATSALDTESERLVQAALERLMK-NRTTFVIAHRLSTIEN-ADRIVVLEDGKIVERGTHEEL  223 (234)
T ss_pred             CCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHHHHhh-CCEEEEecCCeEeeeCCHHHH
Confidence            9999999999999999999999999999864 8999999999999976 999999999999999987765

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.1e-44  Score=394.51  Aligned_cols=217  Identities=28%  Similarity=0.388  Sum_probs=192.7

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC--chHHhc
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD--SMDLVR  418 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~--~~~~~~  418 (566)
                      ++++++|+++.|+    ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..  ....++
T Consensus         3 ~~l~~~~l~~~~~----~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~   78 (501)
T PRK11288          3 PYLSFDGIGKTFP----GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALA   78 (501)
T ss_pred             ceEEEeeeEEEEC----CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHh
Confidence            3699999999996    4579999999999999999999999999999999999999999999999998753  223456


Q ss_pred             CceEEEecCCCCCCCCCHHHHHHHHHH--hcC-CCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCC
Q psy7366         419 SYIGYCPQFDALNDRLTPREHLEFYSR--VRN-VPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGN  495 (566)
Q Consensus       419 ~~i~~v~q~~~l~~~~tv~e~l~~~~~--~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~  495 (566)
                      ++++|+||++.+++.+|+.+|+.+...  ..+ .+.....+++.++++.+++.+..++++.+|||||||||+|||||+.+
T Consensus        79 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~  158 (501)
T PRK11288         79 AGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARN  158 (501)
T ss_pred             CCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhC
Confidence            789999999999999999999987532  112 22334456788999999998878999999999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCc
Q psy7366         496 PPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSA  561 (566)
Q Consensus       496 p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~  561 (566)
                      |++|||||||+|||+.+++.++++|++++++|.|||++|||++++..+|||+++|++|+++..++.
T Consensus       159 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~  224 (501)
T PRK11288        159 ARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD  224 (501)
T ss_pred             CCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence            999999999999999999999999999987799999999999999999999999999999877653

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.9e-44  Score=394.94  Aligned_cols=219  Identities=26%  Similarity=0.394  Sum_probs=192.1

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCC--CccEEEEcCccCCCc-h-HHh
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP--TSGNAYVMNHSIRDS-M-DLV  417 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~-~-~~~  417 (566)
                      +|+++|+++.|+    ++++|+|+||+|++||+++|+||||||||||+++|+|+++|  ++|+|.++|+++... . ...
T Consensus         1 ~l~i~~l~~~~~----~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~   76 (500)
T TIGR02633         1 LLEMKGIVKTFG----GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTE   76 (500)
T ss_pred             CEEEEeEEEEeC----CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHH
Confidence            378999999996    46799999999999999999999999999999999999987  799999999987542 2 234


Q ss_pred             cCceEEEecCCCCCCCCCHHHHHHHHHHhc--C--CCchHHHHHHHHHHHHcCCCCcc-ccCcCcCChhHHHHHHHHHHH
Q psy7366         418 RSYIGYCPQFDALNDRLTPREHLEFYSRVR--N--VPSVLLNTIVNESLNKFALGHYS-DREVRTLSGGNKRKLSTAIAL  492 (566)
Q Consensus       418 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~--~--~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgGqkqrv~la~al  492 (566)
                      +++++|+||++.+++.+|+.||+.+.....  .  .......+++.++++.+++.+.. ++++.+|||||||||+|||||
T Consensus        77 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al  156 (500)
T TIGR02633        77 RAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKAL  156 (500)
T ss_pred             hCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHH
Confidence            567999999998999999999998754321  1  22233455688999999998654 678999999999999999999


Q ss_pred             cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         493 LGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       493 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      +.+|++|||||||+|||+.++..+.++|++++++|.|||++|||++++..+||++++|++|+++..++++++
T Consensus       157 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~  228 (500)
T TIGR02633       157 NKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM  228 (500)
T ss_pred             hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccC
Confidence            999999999999999999999999999999987899999999999999999999999999999999887653

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=100.00  E-value=4.9e-44  Score=357.61  Aligned_cols=218  Identities=23%  Similarity=0.338  Sum_probs=187.6

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCC--CCCCccEEEEcCccCCCc-hHHh
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA--IKPTSGNAYVMNHSIRDS-MDLV  417 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~--~~~~~G~i~~~g~~~~~~-~~~~  417 (566)
                      .+++++|+++.|+    ++.+|+++||+|++||++||+|+||||||||+++|+|+  ++|++|+|+++|.++... ....
T Consensus         6 ~~l~~~~l~~~~~----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~   81 (252)
T CHL00131          6 PILEIKNLHASVN----ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEER   81 (252)
T ss_pred             ceEEEEeEEEEeC----CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhh
Confidence            3699999999996    45699999999999999999999999999999999998  589999999999987542 2222


Q ss_pred             c-CceEEEecCCCCCCCCCHHHHHHHHHHhc----CCC---chHHHHHHHHHHHHcCCC-CccccCcC-cCChhHHHHHH
Q psy7366         418 R-SYIGYCPQFDALNDRLTPREHLEFYSRVR----NVP---SVLLNTIVNESLNKFALG-HYSDREVR-TLSGGNKRKLS  487 (566)
Q Consensus       418 ~-~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~---~~~~~~~~~~~l~~~~l~-~~~~~~~~-~LSgGqkqrv~  487 (566)
                      + ..++|++|++.+++.+|+.+|+.+.....    ...   .......+.++++.+++. ...++++. .|||||+|||+
T Consensus        82 ~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~  161 (252)
T CHL00131         82 AHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNE  161 (252)
T ss_pred             heeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHH
Confidence            2 35899999999999999999987643211    111   112235677899999997 46788887 59999999999


Q ss_pred             HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhh-CCEEEEEECCEEEEecCcc
Q psy7366         488 TAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEAL-CTKLTIMVNGQFTCLGSAT  562 (566)
Q Consensus       488 la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~-~drv~~l~~G~i~~~g~~~  562 (566)
                      |||||+.+|++|||||||+|||+.++..++++|++++++|.|||++|||++++..+ ||++++|++|++++.|+++
T Consensus       162 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~~  237 (252)
T CHL00131        162 ILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAE  237 (252)
T ss_pred             HHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecChh
Confidence            99999999999999999999999999999999999887799999999999999887 8999999999999999886

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.6e-44  Score=394.56  Aligned_cols=216  Identities=23%  Similarity=0.292  Sum_probs=191.2

Q ss_pred             EeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc--hHHhcCceE
Q psy7366         345 VKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS--MDLVRSYIG  422 (566)
Q Consensus       345 ~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~--~~~~~~~i~  422 (566)
                      ++|+++.|+    ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...  ....+++++
T Consensus         1 ~~nl~~~~~----~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~   76 (491)
T PRK10982          1 MSNISKSFP----GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGIS   76 (491)
T ss_pred             CCceEEEeC----CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEE
Confidence            368999996    46799999999999999999999999999999999999999999999999987532  233467899


Q ss_pred             EEecCCCCCCCCCHHHHHHHHHH-hcC--CCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEE
Q psy7366         423 YCPQFDALNDRLTPREHLEFYSR-VRN--VPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLI  499 (566)
Q Consensus       423 ~v~q~~~l~~~~tv~e~l~~~~~-~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~ll  499 (566)
                      |+||++.+++.+||.||+.+... ..+  .......+.+.++++.+++....++++.+|||||||||+|||||+.+|++|
T Consensus        77 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~ll  156 (491)
T PRK10982         77 MVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIV  156 (491)
T ss_pred             EEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEE
Confidence            99999988899999999986432 111  122333456889999999988889999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         500 FLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       500 lLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      ||||||+|||+.++..++++|++++++|.|||++|||++++..+|||+++|++|+++..|+++++
T Consensus       157 lLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  221 (491)
T PRK10982        157 IMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGL  221 (491)
T ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhC
Confidence            99999999999999999999999987899999999999999999999999999999999987664

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=100.00  E-value=1.5e-44  Score=348.95  Aligned_cols=198  Identities=25%  Similarity=0.364  Sum_probs=178.6

Q ss_pred             EEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceE
Q psy7366         343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIG  422 (566)
Q Consensus       343 l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~  422 (566)
                      |+++|+++.|+    ++.+|+++||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.......+++++
T Consensus         1 l~i~~l~~~~~----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~   76 (201)
T cd03231           1 LEADELTCERD----GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLL   76 (201)
T ss_pred             CEEEEEEEEeC----CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheE
Confidence            46899999996    46799999999999999999999999999999999999999999999999887543345567899


Q ss_pred             EEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEe
Q psy7366         423 YCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLD  502 (566)
Q Consensus       423 ~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLD  502 (566)
                      |++|++.+++.+|++||+.++...      ...+.+.++++.+++.+..++++.+||||||||++|||||+.+|++||||
T Consensus        77 ~~~q~~~~~~~~tv~e~l~~~~~~------~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD  150 (201)
T cd03231          77 YLGHAPGIKTTLSVLENLRFWHAD------HSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILD  150 (201)
T ss_pred             EeccccccCCCcCHHHHHHhhccc------ccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            999999888889999999875321      12356788999999988889999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEE
Q psy7366         503 EPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIM  550 (566)
Q Consensus       503 EPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l  550 (566)
                      |||+|||+.+++.+.+.|+++.++|.|+|++|||..+...+|++++++
T Consensus       151 EPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~  198 (201)
T cd03231         151 EPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL  198 (201)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence            999999999999999999998877999999999999999999999887

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.8e-44  Score=358.43  Aligned_cols=217  Identities=23%  Similarity=0.296  Sum_probs=189.1

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCC-----CccEEEEcCccCCC---
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIRD---  412 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~-----~~G~i~~~g~~~~~---  412 (566)
                      .++.++++++.|+    ++.+|+|+||+|++||+++|+|+||||||||+++|+|+++|     ++|+|.++|+++..   
T Consensus         7 ~~~~~~~~~~~~~----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~   82 (261)
T PRK14263          7 IVMDCKLDKIFYG----NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGV   82 (261)
T ss_pred             ceEEEEeEEEEeC----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEecccccc
Confidence            4689999999996    56799999999999999999999999999999999999986     79999999998743   


Q ss_pred             chHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCC----ccccCcCcCChhHHHHHHH
Q psy7366         413 SMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGH----YSDREVRTLSGGNKRKLST  488 (566)
Q Consensus       413 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~LSgGqkqrv~l  488 (566)
                      ....+++.++|+||++.++ .+|+.||+.+........ ......+.++++.+++.+    ..++++.+|||||+||++|
T Consensus        83 ~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~l  160 (261)
T PRK14263         83 DPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNRYK-GDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCI  160 (261)
T ss_pred             chHhhhhceEEEecCCccc-cccHHHHHHHHHhhcCch-HHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHH
Confidence            2234567899999999887 589999998765433322 233456788999999853    3467889999999999999


Q ss_pred             HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEE--------CCEEEEecC
Q psy7366         489 AIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMV--------NGQFTCLGS  560 (566)
Q Consensus       489 a~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~--------~G~i~~~g~  560 (566)
                      ||||+.+|++|||||||+|||+.++..++++|+++.+ +.|||++||+++++..+|||+++|+        +|++++.|+
T Consensus       161 aral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~-~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~  239 (261)
T PRK14263        161 ARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK-DYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGP  239 (261)
T ss_pred             HHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeCC
Confidence            9999999999999999999999999999999999854 7899999999999999999999996        899999999


Q ss_pred             cccc
Q psy7366         561 ATHL  564 (566)
Q Consensus       561 ~~~l  564 (566)
                      ++++
T Consensus       240 ~~~~  243 (261)
T PRK14263        240 TAQI  243 (261)
T ss_pred             HHHH
Confidence            8765

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=100.00  E-value=1.8e-44  Score=359.64  Aligned_cols=211  Identities=20%  Similarity=0.296  Sum_probs=183.9

Q ss_pred             EEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCceE
Q psy7366         344 VVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSYIG  422 (566)
Q Consensus       344 ~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~i~  422 (566)
                      +++||++.        .+|+|+||+|++|++++|+||||||||||+++|+|++++ +|+|.++|+++.. .....++.++
T Consensus         2 ~~~~l~~~--------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~   72 (248)
T PRK03695          2 QLNDVAVS--------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRA   72 (248)
T ss_pred             cccccchh--------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheE
Confidence            45677653        279999999999999999999999999999999999864 9999999998754 3334456799


Q ss_pred             EEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcC-------C
Q psy7366         423 YCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLG-------N  495 (566)
Q Consensus       423 ~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~-------~  495 (566)
                      |+||++.+++.+|+.+|+.+.... ........+.+.++++.+++.+..++++.+||||||||++|||||+.       +
T Consensus        73 ~v~q~~~~~~~~tv~~nl~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~  151 (248)
T PRK03695         73 YLSQQQTPPFAMPVFQYLTLHQPD-KTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPA  151 (248)
T ss_pred             EecccCccCCCccHHHHHHhcCcc-CCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCC
Confidence            999998888889999999875321 22233345678899999999888899999999999999999999997       6


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         496 PPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       496 p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      |++|||||||+|||+.++..+.++|++++++|.|||++|||++++..+||++++|++|++++.|+.+++
T Consensus       152 p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  220 (248)
T PRK03695        152 GQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEV  220 (248)
T ss_pred             CCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence            799999999999999999999999999987799999999999999999999999999999999987765

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=100.00  E-value=1.5e-44  Score=354.01  Aligned_cols=206  Identities=28%  Similarity=0.463  Sum_probs=175.8

Q ss_pred             EEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCce
Q psy7366         343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSYI  421 (566)
Q Consensus       343 l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~i  421 (566)
                      ++++|+++.|+.  +.+.+|+|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|+++.. .....++.+
T Consensus         3 l~~~~l~~~~~~--~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i   80 (220)
T cd03245           3 IEFRNVSFSYPN--QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI   80 (220)
T ss_pred             EEEEEEEEEcCC--CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence            789999999962  12569999999999999999999999999999999999999999999999988743 223346689


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccC-----------cCcCChhHHHHHHHHH
Q psy7366         422 GYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDRE-----------VRTLSGGNKRKLSTAI  490 (566)
Q Consensus       422 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgGqkqrv~la~  490 (566)
                      +|++|++.+++ .|+.||+.+....   ..   ...+.++++.+++.+..++.           +.+||||||||++|||
T Consensus        81 ~~~~q~~~~~~-~tv~e~l~~~~~~---~~---~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~  153 (220)
T cd03245          81 GYVPQDVTLFY-GTLRDNITLGAPL---AD---DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALAR  153 (220)
T ss_pred             EEeCCCCcccc-chHHHHhhcCCCC---CC---HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHH
Confidence            99999998876 6999998764211   11   23456777888876655554           4699999999999999


Q ss_pred             HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEec
Q psy7366         491 ALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLG  559 (566)
Q Consensus       491 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g  559 (566)
                      ||+.+|++|||||||+|||+.++..++++|++++++ .|||++|||++++ .+||++++|++|++++.|
T Consensus       154 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~-~~~d~v~~l~~g~i~~~~  220 (220)
T cd03245         154 ALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPSLL-DLVDRIIVMDSGRIVADG  220 (220)
T ss_pred             HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHHHH-HhCCEEEEEeCCeEeecC
Confidence            999999999999999999999999999999998764 8999999999987 699999999999998654

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.3e-44  Score=367.40  Aligned_cols=222  Identities=23%  Similarity=0.362  Sum_probs=191.0

Q ss_pred             CCCeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCC-----CCccEEEEcCccCCC-
Q psy7366         339 SGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIRD-  412 (566)
Q Consensus       339 ~~~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~-  412 (566)
                      ...+++++|+++.|..  +.+++|+|+||+|++||++||+||||||||||+++|+|+.+     |++|+|.++|.++.. 
T Consensus        77 ~~~~i~~~nls~~y~~--~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~  154 (329)
T PRK14257         77 HANVFEIRNFNFWYMN--RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSK  154 (329)
T ss_pred             cCceEEEEeeEEEecC--CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc
Confidence            3458999999999962  23569999999999999999999999999999999999986     579999999999853 


Q ss_pred             --chHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCch-HHHHHHHHHHHHcCCC----CccccCcCcCChhHHHH
Q psy7366         413 --SMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSV-LLNTIVNESLNKFALG----HYSDREVRTLSGGNKRK  485 (566)
Q Consensus       413 --~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~-~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqr  485 (566)
                        ....+++.++|+||++.+|+ .|++||+.|.....+.... ...+.+.++++.+++.    ...++++.+||||||||
T Consensus       155 ~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqR  233 (329)
T PRK14257        155 KISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQR  233 (329)
T ss_pred             ccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHH
Confidence              22356778999999998885 6999999876433322222 2233467788888873    34678999999999999


Q ss_pred             HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         486 LSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       486 v~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      ++|||||+.+|+||||||||++||+.+...+.+.|+++.+ ++|||++||+++++.++||||++|++|++++.|+++++
T Consensus       234 l~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l  311 (329)
T PRK14257        234 LCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTI  311 (329)
T ss_pred             HHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            9999999999999999999999999999999999998865 69999999999999999999999999999999999876

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=100.00  E-value=5.1e-44  Score=345.42  Aligned_cols=195  Identities=23%  Similarity=0.314  Sum_probs=171.5

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCC---CCccEEEEcCccCCCchHHhc
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK---PTSGNAYVMNHSIRDSMDLVR  418 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~  418 (566)
                      .+.++|+++.|+...+++.+|+++||+|++||+++|+||||||||||+++|+|+++   |++|+|.++|.++.......+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~   82 (202)
T cd03233           3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP   82 (202)
T ss_pred             eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhc
Confidence            47899999999865456789999999999999999999999999999999999999   899999999998765334456


Q ss_pred             CceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCE
Q psy7366         419 SYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPL  498 (566)
Q Consensus       419 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~l  498 (566)
                      +.++|++|++.+++.+|++||+.+.....                       .++++.+||+||+||++|||||+.+|++
T Consensus        83 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----------------------~~~~~~~LS~Ge~qrl~laral~~~p~l  139 (202)
T cd03233          83 GEIIYVSEEDVHFPTLTVRETLDFALRCK-----------------------GNEFVRGISGGERKRVSIAEALVSRASV  139 (202)
T ss_pred             ceEEEEecccccCCCCcHHHHHhhhhhhc-----------------------cccchhhCCHHHHHHHHHHHHHhhCCCE
Confidence            78999999998999999999997643210                       4678899999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEE-EccCHHHHHhhCCEEEEEECCEEEEec
Q psy7366         499 IFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVIL-TSHNMEECEALCTKLTIMVNGQFTCLG  559 (566)
Q Consensus       499 llLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~-vsHd~~~~~~~~drv~~l~~G~i~~~g  559 (566)
                      |||||||+|||+.+++.++++|+++.++ +.|+|+ ++|+.+++.++||++++|++|+++..|
T Consensus       140 lllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g  202 (202)
T cd03233         140 LCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG  202 (202)
T ss_pred             EEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence            9999999999999999999999998765 666555 566678999999999999999998754

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.8e-44  Score=356.15  Aligned_cols=217  Identities=21%  Similarity=0.334  Sum_probs=188.9

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCC-----CCccEEEEcCccCCC---c
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIRD---S  413 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~---~  413 (566)
                      +++++|+++.|+    ++++|+|+||+|.+||+++|+||||||||||+++|+|+.+     |++|+|.++|.++..   .
T Consensus         3 ~l~~~~v~~~~~----~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~   78 (250)
T PRK14266          3 RIEVENLNTYFD----DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVD   78 (250)
T ss_pred             EEEEEeEEEEeC----CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEccccccc
Confidence            478999999996    4679999999999999999999999999999999999864     489999999998753   2


Q ss_pred             hHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCC-CchHHHHHHHHHHHHcCCC----CccccCcCcCChhHHHHHHH
Q psy7366         414 MDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNV-PSVLLNTIVNESLNKFALG----HYSDREVRTLSGGNKRKLST  488 (566)
Q Consensus       414 ~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqrv~l  488 (566)
                      ....+++++|+||++.+|+. |+.||+.+.....+. ......+.+.++++.+++.    +..++++.+||+|||||++|
T Consensus        79 ~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~l  157 (250)
T PRK14266         79 VVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCI  157 (250)
T ss_pred             HHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHH
Confidence            33456789999999988875 999999875433322 2233456678889999874    34688899999999999999


Q ss_pred             HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         489 AIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       489 a~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      ||||+.+|++|||||||+|||+.++..+.++|+++++ +.|||++||+++++..+||++++|++|++++.|+++++
T Consensus       158 aral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~  232 (250)
T PRK14266        158 ARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQI  232 (250)
T ss_pred             HHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHH
Confidence            9999999999999999999999999999999999854 79999999999999999999999999999999998765

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=100.00  E-value=6.3e-44  Score=350.57  Aligned_cols=210  Identities=28%  Similarity=0.404  Sum_probs=178.3

Q ss_pred             eEEEeeeEEEeCCcC--C-CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcC--c--cCCC-c
Q psy7366         342 VLVVKRLFKIYANSK--G-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN--H--SIRD-S  413 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~--~-~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g--~--~~~~-~  413 (566)
                      +++++|+++.|+...  + .+.+|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|  .  ++.. .
T Consensus         1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~   80 (224)
T TIGR02324         1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQAS   80 (224)
T ss_pred             CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcC
Confidence            478999999995210  1 24699999999999999999999999999999999999999999999984  2  4322 1


Q ss_pred             hH---H-hcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCC-ccccCcCcCChhHHHHHHH
Q psy7366         414 MD---L-VRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGH-YSDREVRTLSGGNKRKLST  488 (566)
Q Consensus       414 ~~---~-~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqrv~l  488 (566)
                      ..   . .+++++|+||++.+++.+|+.||+.+.....+.......+.+.++++.+++.+ ..++++.+||||||||++|
T Consensus        81 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~l  160 (224)
T TIGR02324        81 PREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNI  160 (224)
T ss_pred             HHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHH
Confidence            11   1 24579999999999999999999987544333333344567788999999975 4588999999999999999


Q ss_pred             HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEE
Q psy7366         489 AIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMV  551 (566)
Q Consensus       489 a~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~  551 (566)
                      ||||+.+|++|||||||+|||+.+++.+.+.|++++++|.|||++||+.+++..+|||++.+.
T Consensus       161 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~~  223 (224)
T TIGR02324       161 ARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDVT  223 (224)
T ss_pred             HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEecC
Confidence            999999999999999999999999999999999997779999999999999999999998763

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=100.00  E-value=3.7e-44  Score=394.40  Aligned_cols=218  Identities=29%  Similarity=0.368  Sum_probs=189.9

Q ss_pred             EEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCC--CCCccEEEEc--------------
Q psy7366         343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI--KPTSGNAYVM--------------  406 (566)
Q Consensus       343 l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~--~~~~G~i~~~--------------  406 (566)
                      |+++|+++.|+    ++.+|+|+||+|++|++++|+||||||||||+|+|+|++  +|++|+|.++              
T Consensus         1 l~~~~l~~~~~----~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~   76 (520)
T TIGR03269         1 IEVKNLTKKFD----GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPS   76 (520)
T ss_pred             CEEEEEEEEEC----CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccc
Confidence            46899999996    467999999999999999999999999999999999997  7999999997              


Q ss_pred             ---------CccCC-------C-c---hHHhcCceEEEecC-CCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHc
Q psy7366         407 ---------NHSIR-------D-S---MDLVRSYIGYCPQF-DALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKF  465 (566)
Q Consensus       407 ---------g~~~~-------~-~---~~~~~~~i~~v~q~-~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~  465 (566)
                               |.++.       . .   ....++.++|+||+ +.+++.+|+.||+.+.....+.+.....+++.++++.+
T Consensus        77 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~  156 (520)
T TIGR03269        77 KVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMV  156 (520)
T ss_pred             ccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence                     22221       0 0   12345679999998 67888899999998865544444444556788999999


Q ss_pred             CCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhC
Q psy7366         466 ALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALC  544 (566)
Q Consensus       466 ~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~  544 (566)
                      ++.+..++++.+|||||||||+|||||+.+|++|||||||++||+.++..++++|++++++ |.|||+||||++++..+|
T Consensus       157 gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~  236 (520)
T TIGR03269       157 QLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLS  236 (520)
T ss_pred             CChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhc
Confidence            9998889999999999999999999999999999999999999999999999999998664 899999999999999999


Q ss_pred             CEEEEEECCEEEEecCcccc
Q psy7366         545 TKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       545 drv~~l~~G~i~~~g~~~~l  564 (566)
                      |++++|++|+++..|+++++
T Consensus       237 d~i~~l~~G~i~~~g~~~~~  256 (520)
T TIGR03269       237 DKAIWLENGEIKEEGTPDEV  256 (520)
T ss_pred             CEEEEEeCCEEeeecCHHHH
Confidence            99999999999998887654

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=100.00  E-value=2.7e-44  Score=356.48  Aligned_cols=216  Identities=26%  Similarity=0.416  Sum_probs=178.7

Q ss_pred             EEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCce
Q psy7366         343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSYI  421 (566)
Q Consensus       343 l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~i  421 (566)
                      ++++|+++.|+.. +++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. .....++.+
T Consensus         1 l~i~~l~~~~~~~-~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i   79 (238)
T cd03249           1 IEFKNVSFRYPSR-PDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQI   79 (238)
T ss_pred             CeEEEEEEecCCC-CCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhE
Confidence            4689999999631 12469999999999999999999999999999999999999999999999988753 233445679


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHH-----HHHHHHHHc--CCCCccccCcCcCChhHHHHHHHHHHHcC
Q psy7366         422 GYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNT-----IVNESLNKF--ALGHYSDREVRTLSGGNKRKLSTAIALLG  494 (566)
Q Consensus       422 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGqkqrv~la~al~~  494 (566)
                      +|+||++.+++ .|+.||+.+.....  .......     .+.++++.+  ++....++++.+|||||||||+|||||+.
T Consensus        80 ~~~~q~~~~~~-~tv~e~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~  156 (238)
T cd03249          80 GLVSQEPVLFD-GTIAENIRYGKPDA--TDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLR  156 (238)
T ss_pred             EEECCchhhhh-hhHHHHhhccCCCC--CHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhc
Confidence            99999988776 69999997643211  1111111     122333333  45555678899999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         495 NPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       495 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      +|++|||||||+|||+.+++.+++.|+++. +|.|||++|||++++. +||++++|++|++++.++.+++
T Consensus       157 ~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~~~-~~d~v~~l~~G~i~~~~~~~~~  224 (238)
T cd03249         157 NPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLSTIR-NADLIAVLQNGQVVEQGTHDEL  224 (238)
T ss_pred             CCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHh-hCCEEEEEECCEEEEeCCHHHH
Confidence            999999999999999999999999999987 7899999999999997 8999999999999999887654

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=100.00  E-value=5.4e-44  Score=336.85  Aligned_cols=173  Identities=45%  Similarity=0.774  Sum_probs=160.0

Q ss_pred             EEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceE
Q psy7366         343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIG  422 (566)
Q Consensus       343 l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~  422 (566)
                      ++++|+++.|+    +.++|+++||++.+||+++|+||||||||||+++|+|+++|++|+|.++|+++.......++.++
T Consensus         1 l~~~~l~~~~~----~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~   76 (173)
T cd03230           1 IEVRNLSKRYG----KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIG   76 (173)
T ss_pred             CEEEEEEEEEC----CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEE
Confidence            46899999996    35699999999999999999999999999999999999999999999999987543344567899


Q ss_pred             EEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEe
Q psy7366         423 YCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLD  502 (566)
Q Consensus       423 ~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLD  502 (566)
                      |+||++.+++.+|+.||+.                                    |||||+||++|||||+.+|++||||
T Consensus        77 ~~~q~~~~~~~~tv~~~~~------------------------------------LS~G~~qrv~laral~~~p~illlD  120 (173)
T cd03230          77 YLPEEPSLYENLTVRENLK------------------------------------LSGGMKQRLALAQALLHDPELLILD  120 (173)
T ss_pred             EEecCCccccCCcHHHHhh------------------------------------cCHHHHHHHHHHHHHHcCCCEEEEe
Confidence            9999999998899999873                                    9999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEE
Q psy7366         503 EPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQF  555 (566)
Q Consensus       503 EPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i  555 (566)
                      |||+|||+.++..+.++|+++.++|.|+|++|||.+++..+||++++|++|++
T Consensus       121 EPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i  173 (173)
T cd03230         121 EPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI  173 (173)
T ss_pred             CCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence            99999999999999999999987789999999999999999999999999974

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.6e-43  Score=356.43  Aligned_cols=219  Identities=23%  Similarity=0.287  Sum_probs=188.5

Q ss_pred             CCeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCC-----CccEEEEcCccCCC--
Q psy7366         340 GDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIRD--  412 (566)
Q Consensus       340 ~~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~-----~~G~i~~~g~~~~~--  412 (566)
                      ...|+++|+++.|+    ++++|+|+||+|++||+++|+|+||||||||+++|+|+.+|     ++|+|.++|.++..  
T Consensus        14 ~~~l~~~~l~~~~~----~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~   89 (265)
T PRK14252         14 QQKSEVNKLNFYYG----GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILS   89 (265)
T ss_pred             CceEEEEEEEEEEC----CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccc
Confidence            34699999999996    45799999999999999999999999999999999999975     79999999987631  


Q ss_pred             ---chHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCch-HHHHHHHHHHHHcCCC----CccccCcCcCChhHHH
Q psy7366         413 ---SMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSV-LLNTIVNESLNKFALG----HYSDREVRTLSGGNKR  484 (566)
Q Consensus       413 ---~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~-~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkq  484 (566)
                         ....+++.++|+||++.+++. |+.||+.+.....+.... ..++.+.++++.+++.    +..++++.+|||||||
T Consensus        90 ~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~q  168 (265)
T PRK14252         90 PEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQ  168 (265)
T ss_pred             cccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHH
Confidence               123456789999999988886 999999876443333222 2235567788888763    4567889999999999


Q ss_pred             HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         485 KLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       485 rv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      |++|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||+++++..+|||+++|++|++++.|+.+++
T Consensus       169 rv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  247 (265)
T PRK14252        169 RLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTI  247 (265)
T ss_pred             HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            99999999999999999999999999999999999999865 68999999999999999999999999999999988765

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=100.00  E-value=8.4e-44  Score=392.19  Aligned_cols=223  Identities=22%  Similarity=0.320  Sum_probs=192.1

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCC-----CccEEEEcCccCCCc-hH
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIRDS-MD  415 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~-----~~G~i~~~g~~~~~~-~~  415 (566)
                      +++++|+++.|+...+.+.+|+++||+|.+||++||+||||||||||+|+|+|+++|     ++|+|.++|+++... ..
T Consensus         5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~   84 (529)
T PRK15134          5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ   84 (529)
T ss_pred             eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence            699999999996211125799999999999999999999999999999999999986     799999999987542 11


Q ss_pred             ---Hh-cCceEEEecCCC--CCCCCCHHHHHHHHHHh-cCCCchHHHHHHHHHHHHcCCCC---ccccCcCcCChhHHHH
Q psy7366         416 ---LV-RSYIGYCPQFDA--LNDRLTPREHLEFYSRV-RNVPSVLLNTIVNESLNKFALGH---YSDREVRTLSGGNKRK  485 (566)
Q Consensus       416 ---~~-~~~i~~v~q~~~--l~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~LSgGqkqr  485 (566)
                         .. ++++||+||++.  +++.+|+.+|+.+.... .+.+.....+++.++++.+++.+   ..++++.+||||||||
T Consensus        85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qr  164 (529)
T PRK15134         85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQR  164 (529)
T ss_pred             HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHH
Confidence               22 357999999974  66778999998765432 23344445677889999999975   3589999999999999


Q ss_pred             HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         486 LSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       486 v~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      |+|||||+.+|++|||||||++||+.++..++++|++++++ |.|||+||||++++..+|||+++|++|++++.|+++++
T Consensus       165 v~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~  244 (529)
T PRK15134        165 VMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATL  244 (529)
T ss_pred             HHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence            99999999999999999999999999999999999999765 89999999999999999999999999999999987664

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=100.00  E-value=2.7e-44  Score=354.31  Aligned_cols=214  Identities=25%  Similarity=0.381  Sum_probs=178.6

Q ss_pred             EEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCce
Q psy7366         343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSYI  421 (566)
Q Consensus       343 l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~i  421 (566)
                      ++++|+++.|+.   .+.+++|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. .....++.+
T Consensus         3 l~~~~l~~~~~~---~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i   79 (229)
T cd03254           3 IEFENVNFSYDE---KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI   79 (229)
T ss_pred             EEEEEEEEecCC---CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence            789999999962   3469999999999999999999999999999999999999999999999988753 233456789


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHH-----HHHHHHHHc--CCCCccccCcCcCChhHHHHHHHHHHHcC
Q psy7366         422 GYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNT-----IVNESLNKF--ALGHYSDREVRTLSGGNKRKLSTAIALLG  494 (566)
Q Consensus       422 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGqkqrv~la~al~~  494 (566)
                      +|+||++.+++. |+.||+.++....  .......     .+.++++.+  ++....++++.+|||||||||+|||||+.
T Consensus        80 ~~~~q~~~~~~~-tv~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~  156 (229)
T cd03254          80 GVVLQDTFLFSG-TIMENIRLGRPNA--TDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLR  156 (229)
T ss_pred             EEecCCchhhhh-HHHHHHhccCCCC--CHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhc
Confidence            999999988775 9999997653211  1111111     122333433  45555667789999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         495 NPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       495 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      +|++|||||||+|||+.+++.+++.|+++. +|.|||++||+++++.. ||++++|++|++++.++.+++
T Consensus       157 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~-~d~i~~l~~g~~~~~~~~~~~  224 (229)
T cd03254         157 DPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLSTIKN-ADKILVLDDGKIIEEGTHDEL  224 (229)
T ss_pred             CCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHhh-CCEEEEEeCCeEEEeCCHHHH
Confidence            999999999999999999999999999985 48999999999999864 999999999999999887665

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=100.00  E-value=7.3e-44  Score=427.01  Aligned_cols=222  Identities=37%  Similarity=0.636  Sum_probs=203.9

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCc
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSY  420 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~  420 (566)
                      ..|+++|++|.|+.  +++.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.......++.
T Consensus       927 ~~L~I~nLsK~y~~--~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~ 1004 (2272)
T TIGR01257       927 PGVCVKNLVKIFEP--SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQS 1004 (2272)
T ss_pred             ceEEEEeEEEEecC--CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhc
Confidence            47999999999952  2467999999999999999999999999999999999999999999999999986555556788


Q ss_pred             eEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEE
Q psy7366         421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIF  500 (566)
Q Consensus       421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lll  500 (566)
                      +||+||++.+++.+||+||+.++.+.++.+....++++.++++.++|.+..++++.+|||||||||+||+||+.+|++||
T Consensus      1005 IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLL 1084 (2272)
T TIGR01257      1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVV 1084 (2272)
T ss_pred             EEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence            99999999999999999999998776665555556678999999999999999999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         501 LDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       501 LDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      |||||+|||+.+++.++++|++++ +|+|||++|||++++..+|||+++|++|++++.|++++++
T Consensus      1085 LDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk 1148 (2272)
T TIGR01257      1085 LDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLK 1148 (2272)
T ss_pred             EECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence            999999999999999999999985 5999999999999999999999999999999999988775

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=100.00  E-value=1.3e-43  Score=353.79  Aligned_cols=219  Identities=20%  Similarity=0.267  Sum_probs=183.8

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCC--CCCccEEEEcCccCCCc-hH-Hh
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI--KPTSGNAYVMNHSIRDS-MD-LV  417 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~--~~~~G~i~~~g~~~~~~-~~-~~  417 (566)
                      +++++|+++.|+    ++++|+|+||+|++|++++|+||||||||||+++|+|++  +|++|+|.++|+++... .. ..
T Consensus         1 ~i~~~nl~~~~~----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~   76 (248)
T PRK09580          1 MLSIKDLHVSVE----DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRA   76 (248)
T ss_pred             CeEEEEEEEEeC----CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHh
Confidence            478999999996    457999999999999999999999999999999999995  69999999999887542 22 23


Q ss_pred             cCceEEEecCCCCCCCCCHHHHHHHHHH-hc---C---CCchHHHHHHHHHHHHcCCC-CccccCcC-cCChhHHHHHHH
Q psy7366         418 RSYIGYCPQFDALNDRLTPREHLEFYSR-VR---N---VPSVLLNTIVNESLNKFALG-HYSDREVR-TLSGGNKRKLST  488 (566)
Q Consensus       418 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~-~~---~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~-~LSgGqkqrv~l  488 (566)
                      +..++|++|++.+++.+|..+++.+... ..   .   .........+.++++.+++. ...++++. +|||||||||+|
T Consensus        77 ~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~l  156 (248)
T PRK09580         77 GEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDI  156 (248)
T ss_pred             hcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHH
Confidence            4579999999988887777666543211 10   0   01112245677889999995 45677775 899999999999


Q ss_pred             HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhh-CCEEEEEECCEEEEecCcccc
Q psy7366         489 AIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEAL-CTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       489 a~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~-~drv~~l~~G~i~~~g~~~~l  564 (566)
                      ||||+.+|++|||||||+|||+.++..+.++|+++++.|+|||++|||++++..+ ||++++|++|+++..|+++.+
T Consensus       157 aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~~~  233 (248)
T PRK09580        157 LQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLV  233 (248)
T ss_pred             HHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHHHH
Confidence            9999999999999999999999999999999999987789999999999999887 899999999999999987643

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=100.00  E-value=2.1e-43  Score=354.07  Aligned_cols=211  Identities=23%  Similarity=0.350  Sum_probs=185.5

Q ss_pred             eEEEeeeEEEeCCc----------------CCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEE
Q psy7366         342 VLVVKRLFKIYANS----------------KGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV  405 (566)
Q Consensus       342 ~l~~~~l~~~y~~~----------------~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~  405 (566)
                      .++++|+++.|...                .+.+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~   83 (264)
T PRK13546          4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR   83 (264)
T ss_pred             eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence            47888888887542                13456899999999999999999999999999999999999999999999


Q ss_pred             cCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHH
Q psy7366         406 MNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRK  485 (566)
Q Consensus       406 ~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqr  485 (566)
                      +|.            +++++|++.+++.+|+.+|+.+.....+.........+..+++.+++.+..++++.+|||||+||
T Consensus        84 ~g~------------~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qr  151 (264)
T PRK13546         84 NGE------------VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAK  151 (264)
T ss_pred             CCE------------EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHH
Confidence            984            46778887777889999999875443344444444556778889999988899999999999999


Q ss_pred             HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         486 LSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       486 v~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      |+|||||+.+|++|||||||+|||+.++..+++.|.+++++|.|||++||+++++..+||++++|++|++++.|+++++
T Consensus       152 v~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~  230 (264)
T PRK13546        152 LGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDV  230 (264)
T ss_pred             HHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHHHH
Confidence            9999999999999999999999999999999999999977799999999999999999999999999999999988765

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=100.00  E-value=9.5e-44  Score=354.58  Aligned_cols=201  Identities=26%  Similarity=0.444  Sum_probs=178.2

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCce
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYI  421 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i  421 (566)
                      +++++|+++.|+    ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.          ..+
T Consensus         4 ~l~~~~l~~~~~----~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~----------~~i   69 (251)
T PRK09544          4 LVSLENVSVSFG----QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGK----------LRI   69 (251)
T ss_pred             EEEEeceEEEEC----CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCc----------cCE
Confidence            689999999996    457999999999999999999999999999999999999999999999872          369


Q ss_pred             EEEecCCCCCCC--CCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEE
Q psy7366         422 GYCPQFDALNDR--LTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLI  499 (566)
Q Consensus       422 ~~v~q~~~l~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~ll  499 (566)
                      +|+||++.+++.  .|+.+++.+..   +.    ..+.+.++++.+++.+..++++.+|||||||||+|||||+.+|++|
T Consensus        70 ~~v~q~~~~~~~l~~~~~~~~~~~~---~~----~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~ll  142 (251)
T PRK09544         70 GYVPQKLYLDTTLPLTVNRFLRLRP---GT----KKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLL  142 (251)
T ss_pred             EEeccccccccccChhHHHHHhccc---cc----cHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            999999877665  37777664321   11    1345678999999998889999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         500 FLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       500 lLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      ||||||+|||+.++..+++.|+++.++ |.|||++|||++++..+||++++|++ ++++.|+++++
T Consensus       143 lLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~  207 (251)
T PRK09544        143 VLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVV  207 (251)
T ss_pred             EEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHH
Confidence            999999999999999999999998776 89999999999999999999999965 79999987765

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=100.00  E-value=8.2e-44  Score=366.91  Aligned_cols=216  Identities=27%  Similarity=0.395  Sum_probs=200.2

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCC--CchHHhc
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR--DSMDLVR  418 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~--~~~~~~~  418 (566)
                      ..+++++++|.|+    +..++++|||+|++|||.||+|.||||||||+++|.|+++|++|+|+++|+++.  .+.+..+
T Consensus         3 ~~l~~~~itK~f~----~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~   78 (501)
T COG3845           3 PALEMRGITKRFP----GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIR   78 (501)
T ss_pred             ceEEEeccEEEcC----CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHH
Confidence            3689999999997    678999999999999999999999999999999999999999999999999874  4566788


Q ss_pred             CceEEEecCCCCCCCCCHHHHHHHHHHh---cCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCC
Q psy7366         419 SYIGYCPQFDALNDRLTPREHLEFYSRV---RNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGN  495 (566)
Q Consensus       419 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~---~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~  495 (566)
                      ..||+|+|++.+++.+||.||+.++...   .........+++.++.+++||.-..+.++.+||-||||||.|.+||..+
T Consensus        79 ~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~  158 (501)
T COG3845          79 LGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRG  158 (501)
T ss_pred             cCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcC
Confidence            9999999999999999999999887532   1234556778899999999999889999999999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecC
Q psy7366         496 PPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS  560 (566)
Q Consensus       496 p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~  560 (566)
                      |++|||||||+-|-|...+.+++.++.++++|+|||+|||-++|+.++|||+-||..|+++...+
T Consensus       159 a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~  223 (501)
T COG3845         159 ARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD  223 (501)
T ss_pred             CCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec
Confidence            99999999999999999999999999999999999999999999999999999999999877665

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=100.00  E-value=1e-43  Score=351.79  Aligned_cols=214  Identities=23%  Similarity=0.424  Sum_probs=178.5

Q ss_pred             EEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCce
Q psy7366         343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSYI  421 (566)
Q Consensus       343 l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~i  421 (566)
                      ++++|+++.|+.   .+.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++.. ....+++.+
T Consensus         1 l~~~~l~~~~~~---~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i   77 (236)
T cd03253           1 IEFENVTFAYDP---GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAI   77 (236)
T ss_pred             CEEEEEEEEeCC---CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhE
Confidence            468899999952   3569999999999999999999999999999999999999999999999988754 334456789


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHH-----HHHHHHHHc--CCCCccccCcCcCChhHHHHHHHHHHHcC
Q psy7366         422 GYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNT-----IVNESLNKF--ALGHYSDREVRTLSGGNKRKLSTAIALLG  494 (566)
Q Consensus       422 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGqkqrv~la~al~~  494 (566)
                      +|++|++.+++ .|+.||+.+...  .........     .+.+.++.+  ++....++++.+|||||||||+|||||+.
T Consensus        78 ~~~~q~~~~~~-~tv~~nl~~~~~--~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~  154 (236)
T cd03253          78 GVVPQDTVLFN-DTIGYNIRYGRP--DATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILK  154 (236)
T ss_pred             EEECCCChhhc-chHHHHHhhcCC--CCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence            99999998875 699999976432  111111111     122333443  44555677889999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         495 NPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       495 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      +|++|||||||+|||+.++..+.++|.++++ |.|||++||+.+++.. ||++++|++|+++..|+.+++
T Consensus       155 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~~~~-~d~~~~l~~g~i~~~~~~~~~  222 (236)
T cd03253         155 NPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLSTIVN-ADKIIVLKDGRIVERGTHEEL  222 (236)
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHh-CCEEEEEECCEEEeeCCHHHH
Confidence            9999999999999999999999999999876 8999999999999975 999999999999999887665

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=100.00  E-value=1.9e-43  Score=339.23  Aligned_cols=187  Identities=33%  Similarity=0.524  Sum_probs=166.6

Q ss_pred             eEEEeeeEEEeCCcC--CCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCC--CCCccEEEEcCccCCCchHHh
Q psy7366         342 VLVVKRLFKIYANSK--GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI--KPTSGNAYVMNHSIRDSMDLV  417 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~--~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~--~~~~G~i~~~g~~~~~~~~~~  417 (566)
                      .++++|+++.|+...  ..+++|+++||+|++||+++|+||||||||||+++|+|++  +|++|+|.++|+++..  ...
T Consensus         3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~--~~~   80 (194)
T cd03213           3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK--RSF   80 (194)
T ss_pred             EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch--Hhh
Confidence            488999999996210  0257999999999999999999999999999999999999  9999999999998754  245


Q ss_pred             cCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCC
Q psy7366         418 RSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPP  497 (566)
Q Consensus       418 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~  497 (566)
                      ++.++|+||++.+++.+|+.||+.+....                             .+|||||+||++|||||+.+|+
T Consensus        81 ~~~i~~~~q~~~~~~~~t~~~~i~~~~~~-----------------------------~~LS~G~~qrv~laral~~~p~  131 (194)
T cd03213          81 RKIIGYVPQDDILHPTLTVRETLMFAAKL-----------------------------RGLSGGERKRVSIALELVSNPS  131 (194)
T ss_pred             hheEEEccCcccCCCCCcHHHHHHHHHHh-----------------------------ccCCHHHHHHHHHHHHHHcCCC
Confidence            67899999999999999999999754210                             0899999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHH-HHHhhCCEEEEEECCEEEEec
Q psy7366         498 LIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME-ECEALCTKLTIMVNGQFTCLG  559 (566)
Q Consensus       498 lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~-~~~~~~drv~~l~~G~i~~~g  559 (566)
                      +|||||||+|||+.+++.+.++|+++.++|.|||++|||++ ++..+||++++|++|++++.|
T Consensus       132 illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~  194 (194)
T cd03213         132 LLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG  194 (194)
T ss_pred             EEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence            99999999999999999999999998777999999999996 788899999999999998754

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=100.00  E-value=1.1e-43  Score=336.42  Aligned_cols=174  Identities=32%  Similarity=0.525  Sum_probs=160.3

Q ss_pred             EEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc---hHHhcC
Q psy7366         343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS---MDLVRS  419 (566)
Q Consensus       343 l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~---~~~~~~  419 (566)
                      ++++|+++.|+    ++++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...   ....++
T Consensus         1 i~~~~l~~~~~----~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~   76 (178)
T cd03229           1 LELKNVSKRYG----QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRR   76 (178)
T ss_pred             CEEEEEEEEEC----CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhh
Confidence            46899999996    45799999999999999999999999999999999999999999999999887542   345567


Q ss_pred             ceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEE
Q psy7366         420 YIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLI  499 (566)
Q Consensus       420 ~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~ll  499 (566)
                      .++|++|++.+++.+|+.||+.+.                                  ||||||||++|||||+.+|+++
T Consensus        77 ~i~~~~q~~~~~~~~t~~~~l~~~----------------------------------lS~G~~qr~~la~al~~~p~ll  122 (178)
T cd03229          77 RIGMVFQDFALFPHLTVLENIALG----------------------------------LSGGQQQRVALARALAMDPDVL  122 (178)
T ss_pred             cEEEEecCCccCCCCCHHHheeec----------------------------------CCHHHHHHHHHHHHHHCCCCEE
Confidence            899999999988889999987542                                  9999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCE
Q psy7366         500 FLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQ  554 (566)
Q Consensus       500 lLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~  554 (566)
                      ||||||+|||+.++..+.++|++++++ |.|+|++|||++++..+||++++|++|+
T Consensus       123 ilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~  178 (178)
T cd03229         123 LLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK  178 (178)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence            999999999999999999999999887 8999999999999999999999999884

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=100.00  E-value=2.2e-43  Score=338.33  Aligned_cols=187  Identities=28%  Similarity=0.410  Sum_probs=165.6

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCC--CCCccEEEEcCccCCCchHHhc
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI--KPTSGNAYVMNHSIRDSMDLVR  418 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~--~~~~G~i~~~g~~~~~~~~~~~  418 (566)
                      ..++++|+++.|+...+++++|+++||+|++||+++|+||||||||||+++|+|++  +|++|+|.++|+++.   ...+
T Consensus         2 ~~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~---~~~~   78 (192)
T cd03232           2 SVLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD---KNFQ   78 (192)
T ss_pred             cEEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH---HHhh
Confidence            36899999999963211256999999999999999999999999999999999986  489999999998874   3445


Q ss_pred             CceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCE
Q psy7366         419 SYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPL  498 (566)
Q Consensus       419 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~l  498 (566)
                      +.++|++|++.+++.+|++||+.+....                .             +|||||+||++|||||+.+|++
T Consensus        79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~----------------~-------------~LSgGe~qrv~la~al~~~p~v  129 (192)
T cd03232          79 RSTGYVEQQDVHSPNLTVREALRFSALL----------------R-------------GLSVEQRKRLTIGVELAAKPSI  129 (192)
T ss_pred             hceEEecccCccccCCcHHHHHHHHHHH----------------h-------------cCCHHHhHHHHHHHHHhcCCcE
Confidence            6899999999889999999999764210                0             8999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHH-HHHhhCCEEEEEEC-CEEEEec
Q psy7366         499 IFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME-ECEALCTKLTIMVN-GQFTCLG  559 (566)
Q Consensus       499 llLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~-~~~~~~drv~~l~~-G~i~~~g  559 (566)
                      |||||||+|||+.++..+++.|+++++.|.|||++||+++ ++..+||++++|++ |++++.|
T Consensus       130 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g  192 (192)
T cd03232         130 LFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG  192 (192)
T ss_pred             EEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence            9999999999999999999999998777999999999998 47889999999999 9998765

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=100.00  E-value=7.4e-44  Score=358.82  Aligned_cols=210  Identities=24%  Similarity=0.381  Sum_probs=184.4

Q ss_pred             EEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCce
Q psy7366         343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSYI  421 (566)
Q Consensus       343 l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~i  421 (566)
                      |+++|+++.|..  +...+|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|.++.. ....+++++
T Consensus         3 i~~~nls~~~~~--~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i   79 (275)
T cd03289           3 MTVKDLTAKYTE--GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF   79 (275)
T ss_pred             EEEEEEEEEeCC--CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence            789999999952  14569999999999999999999999999999999999998 78999999998854 344567889


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCc-----------CChhHHHHHHHHH
Q psy7366         422 GYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRT-----------LSGGNKRKLSTAI  490 (566)
Q Consensus       422 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----------LSgGqkqrv~la~  490 (566)
                      +|+||++.+|+. |+++|+..+.   ...    .+.+.++++.+++.+..++.+..           ||||||||++|||
T Consensus        80 ~~v~q~~~lf~~-tv~~nl~~~~---~~~----~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaR  151 (275)
T cd03289          80 GVIPQKVFIFSG-TFRKNLDPYG---KWS----DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLAR  151 (275)
T ss_pred             EEECCCcccchh-hHHHHhhhcc---CCC----HHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHH
Confidence            999999999875 9999996431   111    23467788899998777777776           9999999999999


Q ss_pred             HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         491 ALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       491 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      ||+.+|+||||||||++||+.++..+.+.|+++. +++|||+|||+++++.. |||+++|++|++++.|+++++.
T Consensus       152 all~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~~i~~-~dri~vl~~G~i~~~g~~~~l~  224 (275)
T cd03289         152 SVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIEAMLE-CQRFLVIEENKVRQYDSIQKLL  224 (275)
T ss_pred             HHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHHHHHh-CCEEEEecCCeEeecCCHHHHh
Confidence            9999999999999999999999999999999864 48999999999999875 9999999999999999998864

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=100.00  E-value=1.4e-43  Score=341.37  Aligned_cols=197  Identities=25%  Similarity=0.405  Sum_probs=173.6

Q ss_pred             EEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceE
Q psy7366         343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIG  422 (566)
Q Consensus       343 l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~  422 (566)
                      ++++|+++.|+    ++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|+++.......++.++
T Consensus         1 l~~~~l~~~~~----~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~   76 (198)
T TIGR01189         1 LAARNLACSRG----ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNIL   76 (198)
T ss_pred             CEEEEEEEEEC----CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheE
Confidence            46899999996    46799999999999999999999999999999999999999999999999987543344567899


Q ss_pred             EEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEe
Q psy7366         423 YCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLD  502 (566)
Q Consensus       423 ~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLD  502 (566)
                      |++|++.+++.+|+.||+.+......  . . .+.+.++++.+++.+..++++.+||||||||++||||++.+|+++|||
T Consensus        77 ~~~q~~~~~~~~tv~~~l~~~~~~~~--~-~-~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD  152 (198)
T TIGR01189        77 YLGHLPGLKPELSALENLHFWAAIHG--G-A-QRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILD  152 (198)
T ss_pred             EeccCcccccCCcHHHHHHHHHHHcC--C-c-HHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            99999888888999999987654332  1 1 345788999999998889999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEE
Q psy7366         503 EPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTI  549 (566)
Q Consensus       503 EPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~  549 (566)
                      |||+|||+.++..++++|.+++++|.|||++||+...+  .|++++.
T Consensus       153 EPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~--~~~~~~~  197 (198)
T TIGR01189       153 EPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGL--VEARELR  197 (198)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccc--cceEEee
Confidence            99999999999999999999877799999999998654  4687764

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=1.9e-43  Score=342.85  Aligned_cols=199  Identities=26%  Similarity=0.366  Sum_probs=177.0

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCce
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYI  421 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i  421 (566)
                      +++++|+++.|+    ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... . .++.+
T Consensus         2 ~l~~~~l~~~~~----~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~-~-~~~~~   75 (207)
T PRK13539          2 MLEGEDLACVRG----GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDP-D-VAEAC   75 (207)
T ss_pred             EEEEEeEEEEEC----CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcch-h-hHhhc
Confidence            588999999996    45699999999999999999999999999999999999999999999999876421 2 56789


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEE
Q psy7366         422 GYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFL  501 (566)
Q Consensus       422 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllL  501 (566)
                      +|++|++.+++.+|+.||+.+.....+..    .+.+.++++.+++.+..++++.+||||||||++|||||+.+|++|||
T Consensus        76 ~~~~~~~~~~~~~tv~~~l~~~~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llll  151 (207)
T PRK13539         76 HYLGHRNAMKPALTVAENLEFWAAFLGGE----ELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWIL  151 (207)
T ss_pred             EEecCCCcCCCCCcHHHHHHHHHHhcCCc----HHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence            99999888888899999998765433221    23478899999998878999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEEC
Q psy7366         502 DEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVN  552 (566)
Q Consensus       502 DEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~  552 (566)
                      ||||+|||+.+++.+++.|++++++|.|||++||+++++..  |+++.+..
T Consensus       152 DEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~--~~~~~~~~  200 (207)
T PRK13539        152 DEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG--ARELDLGP  200 (207)
T ss_pred             eCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc--CcEEeecC
Confidence            99999999999999999999987779999999999999986  99988754

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.8e-43  Score=359.36  Aligned_cols=218  Identities=23%  Similarity=0.325  Sum_probs=187.4

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCC-----CCccEEEEcCccCCC---
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIRD---  412 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~---  412 (566)
                      .+|.++|+++.|+    ++.+|+++||+|.+||+++|+||||||||||+++|+|+++     |++|+|.++|.++..   
T Consensus        44 ~~l~i~nl~~~~~----~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~  119 (305)
T PRK14264         44 AKLSVEDLDVYYG----DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGV  119 (305)
T ss_pred             ceEEEEEEEEEeC----CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence            4799999999996    4679999999999999999999999999999999999986     689999999988753   


Q ss_pred             chHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhc------------CCC-chHHHHHHHHHHHHcCCC----CccccCc
Q psy7366         413 SMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVR------------NVP-SVLLNTIVNESLNKFALG----HYSDREV  475 (566)
Q Consensus       413 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~------------~~~-~~~~~~~~~~~l~~~~l~----~~~~~~~  475 (566)
                      .....+++++|+||++.+++ .|++||+.+.....            +.. .......+.++++.+++.    +..++++
T Consensus       120 ~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~  198 (305)
T PRK14264        120 NLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNA  198 (305)
T ss_pred             cHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCcc
Confidence            12345678999999998887 49999998754321            111 122345678889999874    4568889


Q ss_pred             CcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEE-EEEECCE
Q psy7366         476 RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKL-TIMVNGQ  554 (566)
Q Consensus       476 ~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv-~~l~~G~  554 (566)
                      .+|||||||||+|||||+.+|+||||||||+|||+.++..+.++|+++++ +.|||++|||++++..+||++ ++|++|+
T Consensus       199 ~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~i~~~~d~i~~~l~~G~  277 (305)
T PRK14264        199 LGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQQAARISDQTAVFLTGGE  277 (305)
T ss_pred             ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHHHHHHhcCEEEEEecCCE
Confidence            99999999999999999999999999999999999999999999999876 489999999999999999997 5789999


Q ss_pred             EEEecCcccc
Q psy7366         555 FTCLGSATHL  564 (566)
Q Consensus       555 i~~~g~~~~l  564 (566)
                      +++.|+++++
T Consensus       278 i~~~g~~~~~  287 (305)
T PRK14264        278 LVEYDDTDKI  287 (305)
T ss_pred             EEEeCCHHHH
Confidence            9999988765

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=2.3e-43  Score=340.48  Aligned_cols=197  Identities=27%  Similarity=0.337  Sum_probs=175.0

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCce
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYI  421 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i  421 (566)
                      +|.++|+++.|+    ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.......++++
T Consensus         1 ml~~~~l~~~~~----~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i   76 (200)
T PRK13540          1 MLDVIELDFDYH----DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQL   76 (200)
T ss_pred             CEEEEEEEEEeC----CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhhe
Confidence            378999999996    4579999999999999999999999999999999999999999999999998764334556789


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEE
Q psy7366         422 GYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFL  501 (566)
Q Consensus       422 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllL  501 (566)
                      +|++|++.+++.+|+.+|+.+.....   .  ....+.++++.+++.+..++++.+|||||+||++||||++.+|++|||
T Consensus        77 ~~~~q~~~~~~~~tv~~~~~~~~~~~---~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lil  151 (200)
T PRK13540         77 CFVGHRSGINPYLTLRENCLYDIHFS---P--GAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLL  151 (200)
T ss_pred             EEeccccccCcCCCHHHHHHHHHhcC---c--chHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence            99999998888899999998753221   1  124678899999998778899999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEE
Q psy7366         502 DEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLT  548 (566)
Q Consensus       502 DEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~  548 (566)
                      ||||+|||+.+++.+.+.|++++++|.|||++||+.+.+.. ||.-.
T Consensus       152 DEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~-~d~~~  197 (200)
T PRK13540        152 DEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNK-ADYEE  197 (200)
T ss_pred             eCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccc-cchhh
Confidence            99999999999999999999987779999999999998866 88654

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=100.00  E-value=1.2e-43  Score=387.86  Aligned_cols=211  Identities=20%  Similarity=0.268  Sum_probs=185.7

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCc
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSY  420 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~  420 (566)
                      +|+++|+++.|+    ++.+|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.++.. .....++.
T Consensus         3 ~l~~~~l~~~~~----~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~   78 (490)
T PRK10938          3 SLQISQGTFRLS----DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKL   78 (490)
T ss_pred             eEEEEeEEEEcC----CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHH
Confidence            589999999996    4569999999999999999999999999999999999999999999999987643 22334567


Q ss_pred             eEEEecCCCC--C------CCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHH
Q psy7366         421 IGYCPQFDAL--N------DRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIAL  492 (566)
Q Consensus       421 i~~v~q~~~l--~------~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al  492 (566)
                      ++|++|++.+  +      ..+|+.+|+.+.        ....+++.++++.+++.+..++++.+|||||||||+||+||
T Consensus        79 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al  150 (490)
T PRK10938         79 VSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE--------VKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQAL  150 (490)
T ss_pred             hceeccCcchhhcccchhhccccHHHhcccc--------hhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHH
Confidence            9999998642  1      146888876432        12345678999999998888999999999999999999999


Q ss_pred             cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         493 LGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       493 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      +.+|++|||||||+|||+.+++.++++|++++++|.|||++|||++++..+||++++|++|+++..|+++++
T Consensus       151 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~  222 (490)
T PRK10938        151 MSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEI  222 (490)
T ss_pred             HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence            999999999999999999999999999999987799999999999999999999999999999999887654

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=100.00  E-value=2.2e-43  Score=346.02  Aligned_cols=206  Identities=23%  Similarity=0.366  Sum_probs=175.5

Q ss_pred             EEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCce
Q psy7366         343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSYI  421 (566)
Q Consensus       343 l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~i  421 (566)
                      ++++|+++.|+.  +.+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. ....+++.+
T Consensus         3 l~~~~l~~~~~~--~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i   80 (221)
T cd03244           3 IEFKNVSLRYRP--NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI   80 (221)
T ss_pred             EEEEEEEEecCC--CCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence            789999999963  13579999999999999999999999999999999999999999999999988754 334456789


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCc-----------cccCcCcCChhHHHHHHHHH
Q psy7366         422 GYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHY-----------SDREVRTLSGGNKRKLSTAI  490 (566)
Q Consensus       422 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGqkqrv~la~  490 (566)
                      +|+||++.+++ .|+.||+.+...   ..    ...+.+.++.+++.+.           .++++.+||+||+||++|||
T Consensus        81 ~~~~q~~~l~~-~tv~enl~~~~~---~~----~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~lar  152 (221)
T cd03244          81 SIIPQDPVLFS-GTIRSNLDPFGE---YS----DEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLAR  152 (221)
T ss_pred             EEECCCCcccc-chHHHHhCcCCC---CC----HHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHH
Confidence            99999998776 599999864321   11    1234455555555432           35689999999999999999


Q ss_pred             HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecC
Q psy7366         491 ALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS  560 (566)
Q Consensus       491 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~  560 (566)
                      ||+.+|+++||||||+|||+.+++.++++|+++.+ +.|||++||+++++.. ||++++|++|++++.|+
T Consensus       153 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~-~d~i~~l~~g~~~~~~~  220 (221)
T cd03244         153 ALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLDTIID-SDRILVLDKGRVVEFDS  220 (221)
T ss_pred             HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHHHhh-CCEEEEEECCeEEecCC
Confidence            99999999999999999999999999999999854 6899999999999976 99999999999998875

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=100.00  E-value=1.2e-43  Score=348.95  Aligned_cols=212  Identities=18%  Similarity=0.320  Sum_probs=178.1

Q ss_pred             CCeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhc
Q psy7366         340 GDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVR  418 (566)
Q Consensus       340 ~~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~  418 (566)
                      ..+++++|+++.|+... +..+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++.. .....+
T Consensus         9 ~~~l~~~~l~~~~~~~~-~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~   87 (226)
T cd03248           9 KGIVKFQNVTFAYPTRP-DTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH   87 (226)
T ss_pred             CceEEEEEEEEEeCCCC-CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence            45799999999996311 2469999999999999999999999999999999999999999999999988753 233456


Q ss_pred             CceEEEecCCCCCCCCCHHHHHHHHHHhcCCCc---hHHHHHHHHHHHHc--CCCCccccCcCcCChhHHHHHHHHHHHc
Q psy7366         419 SYIGYCPQFDALNDRLTPREHLEFYSRVRNVPS---VLLNTIVNESLNKF--ALGHYSDREVRTLSGGNKRKLSTAIALL  493 (566)
Q Consensus       419 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~---~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgGqkqrv~la~al~  493 (566)
                      +.++|++|++.+++ .|+.||+.+.........   ......+.++++.+  ++....++++.+|||||||||+|||||+
T Consensus        88 ~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~  166 (226)
T cd03248          88 SKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALI  166 (226)
T ss_pred             hhEEEEecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHh
Confidence            78999999998776 599999976432111000   00112246778888  7887789999999999999999999999


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEE
Q psy7366         494 GNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQF  555 (566)
Q Consensus       494 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i  555 (566)
                      .+|++|||||||+|||+.+++.+.+.|+++.+ +.|||++|||++++.. ||++++|++|++
T Consensus       167 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~-~d~i~~l~~g~i  226 (226)
T cd03248         167 RNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLSTVER-ADQILVLDGGRI  226 (226)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHHHHHh-CCEEEEecCCcC
Confidence            99999999999999999999999999999865 6899999999999965 999999999974

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=100.00  E-value=4.1e-43  Score=333.62  Aligned_cols=175  Identities=34%  Similarity=0.520  Sum_probs=159.8

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc--hHHhc
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS--MDLVR  418 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~--~~~~~  418 (566)
                      ++++++|+++.|        +|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...  ....+
T Consensus         3 ~~l~~~~l~~~~--------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~   74 (182)
T cd03215           3 PVLEVRGLSVKG--------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIR   74 (182)
T ss_pred             cEEEEeccEEEe--------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHh
Confidence            368999999876        79999999999999999999999999999999999999999999999987642  23456


Q ss_pred             CceEEEecCC---CCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCC
Q psy7366         419 SYIGYCPQFD---ALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGN  495 (566)
Q Consensus       419 ~~i~~v~q~~---~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~  495 (566)
                      ++++|+||++   .+++.+|++||+.+...                                ||+|||||++|||||+.+
T Consensus        75 ~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~--------------------------------LS~G~~qrl~la~al~~~  122 (182)
T cd03215          75 AGIAYVPEDRKREGLVLDLSVAENIALSSL--------------------------------LSGGNQQKVVLARWLARD  122 (182)
T ss_pred             CCeEEecCCcccCcccCCCcHHHHHHHHhh--------------------------------cCHHHHHHHHHHHHHccC
Confidence            7899999985   57888999999875421                                999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEE
Q psy7366         496 PPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQF  555 (566)
Q Consensus       496 p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i  555 (566)
                      |++|||||||+|||+.+++.+.++|+++.++|.|+|++||+++++..+||++++|++|++
T Consensus       123 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i  182 (182)
T cd03215         123 PRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI  182 (182)
T ss_pred             CCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence            999999999999999999999999999977789999999999999999999999999974

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=100.00  E-value=3.3e-43  Score=331.54  Aligned_cols=172  Identities=30%  Similarity=0.518  Sum_probs=156.1

Q ss_pred             EEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCce
Q psy7366         343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSYI  421 (566)
Q Consensus       343 l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~i  421 (566)
                      ++++|+++.|+.  +.+.+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .....++++
T Consensus         1 i~~~~l~~~~~~--~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i   78 (173)
T cd03246           1 LEVENVSFRYPG--AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHV   78 (173)
T ss_pred             CEEEEEEEEcCC--CCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhhe
Confidence            468999999962  12469999999999999999999999999999999999999999999999998754 334456789


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEE
Q psy7366         422 GYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFL  501 (566)
Q Consensus       422 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllL  501 (566)
                      +|++|++.+++. |++||+                                     ||||||||++|||||+.+|++|||
T Consensus        79 ~~~~q~~~~~~~-tv~~~l-------------------------------------LS~G~~qrv~la~al~~~p~~lll  120 (173)
T cd03246          79 GYLPQDDELFSG-SIAENI-------------------------------------LSGGQRQRLGLARALYGNPRILVL  120 (173)
T ss_pred             EEECCCCccccC-cHHHHC-------------------------------------cCHHHHHHHHHHHHHhcCCCEEEE
Confidence            999999988874 999886                                     999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEE
Q psy7366         502 DEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQF  555 (566)
Q Consensus       502 DEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i  555 (566)
                      ||||+|||+.++..++++|++++++|.|||++|||++++. +||++++|++|++
T Consensus       121 DEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~-~~d~v~~l~~G~i  173 (173)
T cd03246         121 DEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA-SADRILVLEDGRV  173 (173)
T ss_pred             ECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEEEEECCCC
Confidence            9999999999999999999999777999999999999884 7999999999974

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=100.00  E-value=5.7e-43  Score=339.58  Aligned_cols=202  Identities=24%  Similarity=0.335  Sum_probs=172.9

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcC
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRS  419 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~  419 (566)
                      ..++++|+++.|+..  .+.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. .....++
T Consensus         5 ~~l~~~~l~~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~   82 (207)
T cd03369           5 GEIEVENLSVRYAPD--LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRS   82 (207)
T ss_pred             CeEEEEEEEEEeCCC--CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHh
Confidence            458999999999631  2469999999999999999999999999999999999999999999999998743 2334567


Q ss_pred             ceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEE
Q psy7366         420 YIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLI  499 (566)
Q Consensus       420 ~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~ll  499 (566)
                      .++|+||++.+++ .|+.||+.+..   ...    ...+.+.++       .++++.+|||||+||++|||||+.+|++|
T Consensus        83 ~i~~v~q~~~~~~-~tv~~~l~~~~---~~~----~~~~~~~l~-------~~~~~~~LS~G~~qrv~laral~~~p~ll  147 (207)
T cd03369          83 SLTIIPQDPTLFS-GTIRSNLDPFD---EYS----DEEIYGALR-------VSEGGLNLSQGQRQLLCLARALLKRPRVL  147 (207)
T ss_pred             hEEEEecCCcccC-ccHHHHhcccC---CCC----HHHHHHHhh-------ccCCCCcCCHHHHHHHHHHHHHhhCCCEE
Confidence            8999999998877 49999996532   111    122333343       36789999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCc
Q psy7366         500 FLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSA  561 (566)
Q Consensus       500 lLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~  561 (566)
                      ||||||+|||+.++..++++|+++. +|.|+|++||+++++.. ||++++|++|++++.|++
T Consensus       148 llDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~~~~~-~d~v~~l~~g~i~~~g~~  207 (207)
T cd03369         148 VLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLRTIID-YDKILVMDAGEVKEYDHP  207 (207)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHhh-CCEEEEEECCEEEecCCC
Confidence            9999999999999999999999985 48999999999999976 999999999999988764

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=100.00  E-value=4.3e-43  Score=332.28  Aligned_cols=178  Identities=30%  Similarity=0.494  Sum_probs=159.5

Q ss_pred             EEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceE
Q psy7366         343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIG  422 (566)
Q Consensus       343 l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~  422 (566)
                      ++++|+++.|+..  ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.......++.++
T Consensus         1 i~~~~~~~~~~~~--~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~   78 (178)
T cd03247           1 LSINNVSFSYPEQ--EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLIS   78 (178)
T ss_pred             CEEEEEEEEeCCC--CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEE
Confidence            4688999999621  13699999999999999999999999999999999999999999999999876432334567899


Q ss_pred             EEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEe
Q psy7366         423 YCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLD  502 (566)
Q Consensus       423 ~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLD  502 (566)
                      |+||++.+++ .|++||+                                  +.+|||||+||++|||||+.+|++||||
T Consensus        79 ~~~q~~~~~~-~tv~~~i----------------------------------~~~LS~G~~qrv~laral~~~p~~lllD  123 (178)
T cd03247          79 VLNQRPYLFD-TTLRNNL----------------------------------GRRFSGGERQRLALARILLQDAPIVLLD  123 (178)
T ss_pred             EEccCCeeec-ccHHHhh----------------------------------cccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence            9999988776 6998886                                  7789999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEec
Q psy7366         503 EPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLG  559 (566)
Q Consensus       503 EPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g  559 (566)
                      |||+|||+.+++.+++.|+++. ++.|||++||+++++. .||++++|++|++++.|
T Consensus       124 EP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~-~~d~~~~l~~g~i~~~~  178 (178)
T cd03247         124 EPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLTGIE-HMDKILFLENGKIIMQG  178 (178)
T ss_pred             CCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHH-hCCEEEEEECCEEEecC
Confidence            9999999999999999999985 5899999999999986 69999999999998754

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=100.00  E-value=2.8e-43  Score=334.16  Aligned_cols=178  Identities=31%  Similarity=0.564  Sum_probs=160.7

Q ss_pred             EEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCceE
Q psy7366         344 VVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSYIG  422 (566)
Q Consensus       344 ~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~i~  422 (566)
                      +++|+++.|+    ++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ....++..++
T Consensus         1 ~~~~l~~~~~----~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~   76 (180)
T cd03214           1 EVENLSVGYG----GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIA   76 (180)
T ss_pred             CeeEEEEEEC----CeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHh
Confidence            3689999996    3579999999999999999999999999999999999999999999999988754 2334455688


Q ss_pred             EEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEe
Q psy7366         423 YCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLD  502 (566)
Q Consensus       423 ~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLD  502 (566)
                      |+||                                  +++.+++.+..++++.+||||||||++|||||+.+|+++|||
T Consensus        77 ~~~q----------------------------------~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD  122 (180)
T cd03214          77 YVPQ----------------------------------ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLD  122 (180)
T ss_pred             HHHH----------------------------------HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            8887                                  667778877778899999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEec
Q psy7366         503 EPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLG  559 (566)
Q Consensus       503 EPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g  559 (566)
                      |||+|||+.+++.+.++|.+++++ +.|+|++||+++++..+||++++|++|+++..|
T Consensus       123 EP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~  180 (180)
T cd03214         123 EPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG  180 (180)
T ss_pred             CCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence            999999999999999999999776 899999999999999999999999999997653

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=100.00  E-value=3.4e-43  Score=336.53  Aligned_cols=182  Identities=26%  Similarity=0.426  Sum_probs=158.7

Q ss_pred             CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC---chHHhcCceEEEecCCC-CCCC
Q psy7366         358 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD---SMDLVRSYIGYCPQFDA-LNDR  433 (566)
Q Consensus       358 ~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~---~~~~~~~~i~~v~q~~~-l~~~  433 (566)
                      ++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|+++..   .....++.++|+||++. .+..
T Consensus         4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~   83 (190)
T TIGR01166         4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFA   83 (190)
T ss_pred             ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhcccc
Confidence            4679999999999999999999999999999999999999999999999988742   12345678999999973 2334


Q ss_pred             CCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHH
Q psy7366         434 LTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR  513 (566)
Q Consensus       434 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~  513 (566)
                      .|+.||+.+.....+.......+.+.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||+|||+.++
T Consensus        84 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~  163 (190)
T TIGR01166        84 ADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGR  163 (190)
T ss_pred             ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence            79999998764433333334455678999999999888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCcEEEEEccCHHH
Q psy7366         514 RFLWTCIERAVSEGRCVILTSHNMEE  539 (566)
Q Consensus       514 ~~l~~~l~~~~~~g~tvl~vsHd~~~  539 (566)
                      +.+.++|++++++|.|||++|||+++
T Consensus       164 ~~~~~~l~~~~~~~~tili~sH~~~~  189 (190)
T TIGR01166       164 EQMLAILRRLRAEGMTVVISTHDVDL  189 (190)
T ss_pred             HHHHHHHHHHHHcCCEEEEEeecccc
Confidence            99999999998779999999999875

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=100.00  E-value=1.2e-42  Score=335.43  Aligned_cols=185  Identities=25%  Similarity=0.360  Sum_probs=164.5

Q ss_pred             EEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCC--CCCCccEEEEcCccCCCc-h-HHhc
Q psy7366         343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA--IKPTSGNAYVMNHSIRDS-M-DLVR  418 (566)
Q Consensus       343 l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~--~~~~~G~i~~~g~~~~~~-~-~~~~  418 (566)
                      ++++|+++.|+    ++.+|+|+||++.+||+++|+||||||||||+++|+|+  ++|++|+|.++|+++... . ...+
T Consensus         1 l~~~~l~~~~~----~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~   76 (200)
T cd03217           1 LEIKDLHVSVG----GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERAR   76 (200)
T ss_pred             CeEEEEEEEeC----CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhh
Confidence            46899999996    45799999999999999999999999999999999999  579999999999988652 2 2234


Q ss_pred             CceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCE
Q psy7366         419 SYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPL  498 (566)
Q Consensus       419 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~l  498 (566)
                      ..++|+||++.+++..++.+++                               ++.+.+|||||+||++|||||+.+|++
T Consensus        77 ~~i~~v~q~~~~~~~~~~~~~l-------------------------------~~~~~~LS~G~~qrv~laral~~~p~i  125 (200)
T cd03217          77 LGIFLAFQYPPEIPGVKNADFL-------------------------------RYVNEGFSGGEKKRNEILQLLLLEPDL  125 (200)
T ss_pred             CcEEEeecChhhccCccHHHHH-------------------------------hhccccCCHHHHHHHHHHHHHhcCCCE
Confidence            5699999999888888887765                               122368999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHh-hCCEEEEEECCEEEEecCcc
Q psy7366         499 IFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEA-LCTKLTIMVNGQFTCLGSAT  562 (566)
Q Consensus       499 llLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~-~~drv~~l~~G~i~~~g~~~  562 (566)
                      |||||||+|||+.++..++++|.+++++|.|||++||+++++.. +||++++|++|++++.|+.+
T Consensus       126 lllDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~~~~  190 (200)
T cd03217         126 AILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDKE  190 (200)
T ss_pred             EEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEccHH
Confidence            99999999999999999999999997778999999999999988 79999999999999998543

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=100.00  E-value=1.8e-42  Score=368.00  Aligned_cols=211  Identities=26%  Similarity=0.388  Sum_probs=184.1

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCc
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSY  420 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~  420 (566)
                      .++.++|+++.|+... .+.+|+++||+|.+|+++||+||||||||||+++|+|+++|++|+|.++|.+.          
T Consensus        20 ~mL~lknL~~~~~~~~-~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~----------   88 (549)
T PRK13545         20 PFDKLKDLFFRSKDGE-YHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA----------   88 (549)
T ss_pred             ceeEEEEEEEecCCCc-cceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee----------
Confidence            3689999999886321 24699999999999999999999999999999999999999999999999641          


Q ss_pred             eEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEE
Q psy7366         421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIF  500 (566)
Q Consensus       421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lll  500 (566)
                        ++.+.+.+++.+|+.||+.+.....+.......+.+.++++.+++.+..++++.+||||||||++|||||+.+|++||
T Consensus        89 --~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLL  166 (549)
T PRK13545         89 --LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILV  166 (549)
T ss_pred             --eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEE
Confidence              222344566778999999875443344444445567789999999988899999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         501 LDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       501 LDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      |||||+|||+.++..+++.|++++++|.|||++|||++++..+||++++|++|++++.|+++++
T Consensus       167 LDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el  230 (549)
T PRK13545        167 IDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEV  230 (549)
T ss_pred             EECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence            9999999999999999999999877799999999999999999999999999999999988765

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.1e-43  Score=340.54  Aligned_cols=195  Identities=25%  Similarity=0.415  Sum_probs=178.2

Q ss_pred             eeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc-----hHHhcCceEEEecCCCCCCCCCHHH
Q psy7366         364 QISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS-----MDLVRSYIGYCPQFDALNDRLTPRE  438 (566)
Q Consensus       364 ~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-----~~~~~~~i~~v~q~~~l~~~~tv~e  438 (566)
                      +++|+.+.-.+++|.|++|||||||+|+|+|+.+|+.|.|.++|+.+...     ....+++|||||||..+||.+||+.
T Consensus        16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg   95 (352)
T COG4148          16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG   95 (352)
T ss_pred             EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence            68888888689999999999999999999999999999999999876431     2334678999999999999999999


Q ss_pred             HHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHH
Q psy7366         439 HLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT  518 (566)
Q Consensus       439 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~  518 (566)
                      |+.|+....      ....++++.+.+|++++++++|.+|||||||||+|+|||+..|++||||||.++||..-+.+++-
T Consensus        96 NL~YG~~~~------~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~Eilp  169 (352)
T COG4148          96 NLRYGMWKS------MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILP  169 (352)
T ss_pred             chhhhhccc------chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHH
Confidence            999875422      23457889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         519 CIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       519 ~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      .|+++.++ ...|++|||.++|+.++||+|++|++|++.+.|..+++
T Consensus       170 ylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v  216 (352)
T COG4148         170 YLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEV  216 (352)
T ss_pred             HHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHH
Confidence            99999887 89999999999999999999999999999999998775

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=100.00  E-value=1.1e-42  Score=348.60  Aligned_cols=216  Identities=17%  Similarity=0.237  Sum_probs=180.4

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcC
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRS  419 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~  419 (566)
                      ..++++|+++.|+..  .+.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. .....++
T Consensus        18 ~~i~~~~l~~~~~~~--~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~   95 (257)
T cd03288          18 GEIKIHDLCVRYENN--LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS   95 (257)
T ss_pred             ceEEEEEEEEEeCCC--CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence            469999999999631  2569999999999999999999999999999999999999999999999998754 3345577


Q ss_pred             ceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHH-----HHHHHHHHHc--CCCCccccCcCcCChhHHHHHHHHHHH
Q psy7366         420 YIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLN-----TIVNESLNKF--ALGHYSDREVRTLSGGNKRKLSTAIAL  492 (566)
Q Consensus       420 ~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgGqkqrv~la~al  492 (566)
                      .++|++|++.+++. |+.||+.....   .......     ..+.+.++.+  +++...+.++.+||+||+||++|||||
T Consensus        96 ~i~~v~q~~~l~~~-tv~~nl~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral  171 (257)
T cd03288          96 RLSIILQDPILFSG-SIRFNLDPECK---CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAF  171 (257)
T ss_pred             hEEEECCCCccccc-HHHHhcCcCCC---CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHH
Confidence            89999999988764 99999853211   1111111     1123444544  566666778899999999999999999


Q ss_pred             cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         493 LGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       493 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      +.+|++|||||||+|||+.++..++++++++. ++.|||++||+++++.. |||+++|++|++++.|+++++
T Consensus       172 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~~~~-~dri~~l~~G~i~~~g~~~~~  241 (257)
T cd03288         172 VRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVSTILD-ADLVLVLSRGILVECDTPENL  241 (257)
T ss_pred             hcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChHHHHh-CCEEEEEECCEEEEeCCHHHH
Confidence            99999999999999999999999999999874 48999999999999986 999999999999999988765

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=100.00  E-value=2.1e-42  Score=339.35  Aligned_cols=194  Identities=29%  Similarity=0.475  Sum_probs=169.5

Q ss_pred             EEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCC--CCCCHHHHHHHHH
Q psy7366         367 FGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALN--DRLTPREHLEFYS  444 (566)
Q Consensus       367 l~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~--~~~tv~e~l~~~~  444 (566)
                      |+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.    ..+++++|+||++.++  ..+|+.+|+.+..
T Consensus         1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~   76 (223)
T TIGR03771         1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG----KGWRHIGYVPQRHEFAWDFPISVAHTVMSGR   76 (223)
T ss_pred             CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch----HhhCcEEEecccccccCCCCccHHHHHHhcc
Confidence            578999999999999999999999999999999999999998753    2356799999998763  3479999997642


Q ss_pred             Hh----cCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHH
Q psy7366         445 RV----RNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCI  520 (566)
Q Consensus       445 ~~----~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l  520 (566)
                      ..    ...+.......+.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||+|||+.+++.+.+.|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l  156 (223)
T TIGR03771        77 TGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELF  156 (223)
T ss_pred             ccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            11    11122233456888999999998889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         521 ERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       521 ~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      ++++++|.|||++|||++++..+||++++| +|+++..|+++++.
T Consensus       157 ~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~  200 (223)
T TIGR03771       157 IELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQ  200 (223)
T ss_pred             HHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhc
Confidence            999877999999999999999999999999 89999999887764

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.1e-42  Score=366.79  Aligned_cols=212  Identities=26%  Similarity=0.446  Sum_probs=184.9

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCc
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSY  420 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~  420 (566)
                      .++.+|+++.|++   ++++++|+||++++|+.++|+|+||||||||+++|+|+.+|++|+|.+||.+... ....++++
T Consensus       320 ei~~~~l~~~y~~---g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~  396 (559)
T COG4988         320 EISLENLSFRYPD---GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQ  396 (559)
T ss_pred             eeeecceEEecCC---CCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhH
Confidence            3455699999984   4489999999999999999999999999999999999999999999999999876 56678999


Q ss_pred             eEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCcc------ccCcC----cCChhHHHHHHHHH
Q psy7366         421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYS------DREVR----TLSGGNKRKLSTAI  490 (566)
Q Consensus       421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~----~LSgGqkqrv~la~  490 (566)
                      ++||+|+|.+|+. |++||+.++..     . ..++.+.++++..++.++.      |..++    .|||||+|||++||
T Consensus       397 i~~v~Q~p~lf~g-TireNi~l~~~-----~-~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLAR  469 (559)
T COG4988         397 ISWVSQNPYLFAG-TIRENILLARP-----D-ASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALAR  469 (559)
T ss_pred             eeeeCCCCccccc-cHHHHhhccCC-----c-CCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHH
Confidence            9999999999987 99999987532     1 1234466777777664432      33444    49999999999999


Q ss_pred             HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         491 ALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       491 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      ||+.+++++|+||||++||.++.+.+.+.|.++.++ +|||++||++..+.. ||+|++|++|++++.|+++++.
T Consensus       470 All~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~-ktvl~itHrl~~~~~-~D~I~vld~G~l~~~g~~~~L~  542 (559)
T COG4988         470 ALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQ-KTVLVITHRLEDAAD-ADRIVVLDNGRLVEQGTHEELS  542 (559)
T ss_pred             HhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhC-CeEEEEEcChHHHhc-CCEEEEecCCceeccCCHHHHh
Confidence            999999999999999999999999999999998775 999999999999887 8999999999999999998873

>KOG0058|consensus

Probab=100.00  E-value=9.3e-43  Score=373.63  Aligned_cols=219  Identities=25%  Similarity=0.425  Sum_probs=187.0

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcC
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRS  419 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~  419 (566)
                      ..++++|+++.|+.++ +.++|+|+||+|+|||++||+||||+||||+.++|..+|.|++|+|.+||.+++. +...+|+
T Consensus       464 G~IeF~~VsFaYP~Rp-~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~  542 (716)
T KOG0058|consen  464 GVIEFEDVSFAYPTRP-DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRR  542 (716)
T ss_pred             ceEEEEEeeeecCCCC-CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHH
Confidence            4699999999999654 5679999999999999999999999999999999999999999999999999987 5677889


Q ss_pred             ceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHH-----HHHHHHHc--CCCCccccCcCcCChhHHHHHHHHHHH
Q psy7366         420 YIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTI-----VNESLNKF--ALGHYSDREVRTLSGGNKRKLSTAIAL  492 (566)
Q Consensus       420 ~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgGqkqrv~la~al  492 (566)
                      +||+|.|+|.+|.. ||.|||.|+..  ....++....     +.+.+..|  |.+.....+..+||||||||++|||||
T Consensus       543 ~Ig~V~QEPvLFs~-sI~eNI~YG~~--~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARAL  619 (716)
T KOG0058|consen  543 KIGLVGQEPVLFSG-SIRENIAYGLD--NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARAL  619 (716)
T ss_pred             Heeeeeccceeecc-cHHHHHhcCCC--CCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHH
Confidence            99999999999986 99999998654  2223222221     22222222  122234456679999999999999999


Q ss_pred             cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         493 LGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       493 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      ++||.||||||.||+||.++...+.+.|.++.+ ++|||+|.|.+..++. ||+|+++++|++++.|+.+++.
T Consensus       620 lr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLSTV~~-Ad~Ivvi~~G~V~E~G~h~eLl  690 (716)
T KOG0058|consen  620 LRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLSTVRH-ADQIVVIDKGRVVEMGTHDELL  690 (716)
T ss_pred             hcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhhHhhh-ccEEEEEcCCeEEecccHHHHh
Confidence            999999999999999999999999999988755 5999999999999986 9999999999999999998875

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=1.7e-43  Score=315.43  Aligned_cols=197  Identities=27%  Similarity=0.401  Sum_probs=181.2

Q ss_pred             CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCceEEEecCCCCCCCCCH
Q psy7366         358 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSYIGYCPQFDALNDRLTP  436 (566)
Q Consensus       358 ~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~i~~v~q~~~l~~~~tv  436 (566)
                      +.++|+++||++.+||.++|+||+|||||||+|+++-+++|++|+++|.|++++. .+..+|.+|+||.|.|.+|++ ||
T Consensus        15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~-tV   93 (223)
T COG4619          15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGD-TV   93 (223)
T ss_pred             CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCcccccc-ch
Confidence            6779999999999999999999999999999999999999999999999999976 577889999999999999987 99


Q ss_pred             HHHHHHHHHhcCCCchHHHHHHHHHHHHcCCC-CccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHH
Q psy7366         437 REHLEFYSRVRNVPSVLLNTIVNESLNKFALG-HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRF  515 (566)
Q Consensus       437 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~  515 (566)
                      ++|+.|+..++....  +...+..+++++++. ..+++++.+||||||||++|+|-|..-|+|||||||||+||+.+++.
T Consensus        94 eDNlifP~~~r~rr~--dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~  171 (223)
T COG4619          94 EDNLIFPWQIRNRRP--DRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRN  171 (223)
T ss_pred             hhccccchHHhccCC--ChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHH
Confidence            999999887664322  356688999999997 47899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH-hCCcEEEEEccCHHHHHhhCCEEEEEECCEEEE
Q psy7366         516 LWTCIERAV-SEGRCVILTSHNMEECEALCTKLTIMVNGQFTC  557 (566)
Q Consensus       516 l~~~l~~~~-~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~  557 (566)
                      +.++|.++. ++..++++||||.+++.+.+|+++-+..|++-+
T Consensus       172 ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~~  214 (223)
T COG4619         172 IEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAGE  214 (223)
T ss_pred             HHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcccc
Confidence            999999987 568999999999999999999999999998644

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=100.00  E-value=6.6e-43  Score=388.38  Aligned_cols=214  Identities=24%  Similarity=0.401  Sum_probs=183.0

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcC
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRS  419 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~  419 (566)
                      ..++++|+++.|+.  .+..+|+|+||+|++||.+||+|+||||||||+|+|.|+++|++|+|.+||.++.. ....+|+
T Consensus       470 g~I~~~nvsf~y~~--~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~  547 (709)
T COG2274         470 GEIEFENVSFRYGP--DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRR  547 (709)
T ss_pred             ceEEEEEEEEEeCC--CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHh
Confidence            35899999999974  23469999999999999999999999999999999999999999999999999976 5677899


Q ss_pred             ceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCC-----------CCccccCcCcCChhHHHHHHH
Q psy7366         420 YIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFAL-----------GHYSDREVRTLSGGNKRKLST  488 (566)
Q Consensus       420 ~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgGqkqrv~l  488 (566)
                      +||||+|++.+|.+ |++||+.+....  .+.    +.+.+++...|.           +.........||||||||++|
T Consensus       548 ~ig~V~Q~~~Lf~g-SI~eNi~l~~p~--~~~----e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlal  620 (709)
T COG2274         548 QVGYVLQDPFLFSG-SIRENIALGNPE--ATD----EEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLAL  620 (709)
T ss_pred             heeEEcccchhhcC-cHHHHHhcCCCC--CCH----HHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHH
Confidence            99999999999886 999999875321  111    223333333333           223345566899999999999


Q ss_pred             HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         489 AIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       489 a~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      ||||+++|+|||||||||+||+.+.+.+.+.|.++.. |+|+|++||.+..+.. ||||+||++|+|+++|+.+++.
T Consensus       621 ARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~-~~T~I~IaHRl~ti~~-adrIiVl~~Gkiv~~gs~~ell  695 (709)
T COG2274         621 ARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ-GRTVIIIAHRLSTIRS-ADRIIVLDQGKIVEQGSHEELL  695 (709)
T ss_pred             HHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc-CCeEEEEEccchHhhh-ccEEEEccCCceeccCCHHHHH
Confidence            9999999999999999999999999999999998754 7999999999998865 9999999999999999999874

>KOG0065|consensus

Probab=100.00  E-value=9.7e-42  Score=384.18  Aligned_cols=221  Identities=27%  Similarity=0.397  Sum_probs=186.1

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCC--CCccEEEEcCccCCCchHHhc
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK--PTSGNAYVMNHSIRDSMDLVR  418 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~  418 (566)
                      ++...+|+.+.-....+.+.+|+||+=-+.||-.+||+|+|||||||||++|+|-..  ..+|+|.++|.+...  ...+
T Consensus       786 ~V~~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q--~tF~  863 (1391)
T KOG0065|consen  786 DVFYWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ--ETFA  863 (1391)
T ss_pred             ceEEEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch--hhhc
Confidence            345556665544322346789999999999999999999999999999999999753  247899999998653  4567


Q ss_pred             CceEEEecCCCCCCCCCHHHHHHHHHHhc---CCCchHHHHHHHHHHHHcCCCCccccCcCc----CChhHHHHHHHHHH
Q psy7366         419 SYIGYCPQFDALNDRLTPREHLEFYSRVR---NVPSVLLNTIVNESLNKFALGHYSDREVRT----LSGGNKRKLSTAIA  491 (566)
Q Consensus       419 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----LSgGqkqrv~la~a  491 (566)
                      +.+|||-|++.-.+.+||+|-|.|.+.++   ..+..+..+.++++++.++|++..+.-++.    ||..||+|+.||--
T Consensus       864 R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVE  943 (1391)
T KOG0065|consen  864 RVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVE  943 (1391)
T ss_pred             cccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEE
Confidence            88999999877668999999999987665   234444457899999999999888877776    99999999999999


Q ss_pred             HcCCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHH-HHHhhCCEEEEEE-CCEEEEecCccc
Q psy7366         492 LLGNP-PLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME-ECEALCTKLTIMV-NGQFTCLGSATH  563 (566)
Q Consensus       492 l~~~p-~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~-~~~~~~drv~~l~-~G~i~~~g~~~~  563 (566)
                      |+.+| .||+|||||||||..+...+++.++++++.|.|||++-|.+. .+.+-.|++++|+ +|+.++.|+..+
T Consensus       944 LvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen  944 LVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred             EecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence            99999 999999999999999999999999999999999999999984 3345579999995 678999998753

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=100.00  E-value=3.5e-42  Score=355.72  Aligned_cols=187  Identities=28%  Similarity=0.450  Sum_probs=169.2

Q ss_pred             EEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHH
Q psy7366         377 LLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNT  456 (566)
Q Consensus       377 l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~  456 (566)
                      |+||||||||||+++|+|+++|++|+|.++|+++..... .+++++|+||++.+|+.+|+.||+.+.....+.+.....+
T Consensus         1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~-~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~   79 (325)
T TIGR01187         1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP-HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKP   79 (325)
T ss_pred             CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH-HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHH
Confidence            689999999999999999999999999999998854322 3567999999999999999999999876544444444456


Q ss_pred             HHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcc
Q psy7366         457 IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSH  535 (566)
Q Consensus       457 ~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsH  535 (566)
                      ++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.++ |.|||++||
T Consensus        80 ~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTH  159 (325)
T TIGR01187        80 RVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTH  159 (325)
T ss_pred             HHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence            7889999999999899999999999999999999999999999999999999999999999999998765 899999999


Q ss_pred             CHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         536 NMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       536 d~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      |++++..+|||+++|++|+++..|+++++
T Consensus       160 d~~e~~~~~d~i~vl~~G~i~~~g~~~~~  188 (325)
T TIGR01187       160 DQEEAMTMSDRIAIMRKGKIAQIGTPEEI  188 (325)
T ss_pred             CHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence            99999999999999999999999998875

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=100.00  E-value=1e-41  Score=318.08  Aligned_cols=160  Identities=34%  Similarity=0.515  Sum_probs=148.6

Q ss_pred             EEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc-h-HHhcCc
Q psy7366         343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS-M-DLVRSY  420 (566)
Q Consensus       343 l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~-~~~~~~  420 (566)
                      ++++|+++.|+    ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... . ...++.
T Consensus         1 l~~~~l~~~~~----~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~   76 (163)
T cd03216           1 LELRGITKRFG----GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAG   76 (163)
T ss_pred             CEEEEEEEEEC----CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcC
Confidence            46899999996    45799999999999999999999999999999999999999999999999987642 2 335667


Q ss_pred             eEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEE
Q psy7366         421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIF  500 (566)
Q Consensus       421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lll  500 (566)
                      ++|+||                                                   ||||||||++|||||+.+|++||
T Consensus        77 i~~~~q---------------------------------------------------LS~G~~qrl~laral~~~p~ill  105 (163)
T cd03216          77 IAMVYQ---------------------------------------------------LSVGERQMVEIARALARNARLLI  105 (163)
T ss_pred             eEEEEe---------------------------------------------------cCHHHHHHHHHHHHHhcCCCEEE
Confidence            999998                                                   99999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEE
Q psy7366         501 LDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTC  557 (566)
Q Consensus       501 LDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~  557 (566)
                      |||||+|||+.+++.+.+.|++++++|.|||++|||++++..+||++++|++|++++
T Consensus       106 lDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~  162 (163)
T cd03216         106 LDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG  162 (163)
T ss_pred             EECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence            999999999999999999999998779999999999999999999999999999875

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=100.00  E-value=4.2e-42  Score=323.37  Aligned_cols=170  Identities=30%  Similarity=0.562  Sum_probs=153.3

Q ss_pred             EEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCce
Q psy7366         343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSYI  421 (566)
Q Consensus       343 l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~i  421 (566)
                      ++++|+++.|+..  ...+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++.. .....++++
T Consensus         1 l~~~~l~~~~~~~--~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i   78 (171)
T cd03228           1 IEFKNVSFSYPGR--PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNI   78 (171)
T ss_pred             CEEEEEEEEcCCC--CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhE
Confidence            4689999999631  1369999999999999999999999999999999999999999999999988754 233456789


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEE
Q psy7366         422 GYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFL  501 (566)
Q Consensus       422 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllL  501 (566)
                      +|+||++.+++ .|+.||+                                     ||+||||||+|||||+.+|++|||
T Consensus        79 ~~~~~~~~~~~-~t~~e~l-------------------------------------LS~G~~~rl~la~al~~~p~llll  120 (171)
T cd03228          79 AYVPQDPFLFS-GTIRENI-------------------------------------LSGGQRQRIAIARALLRDPPILIL  120 (171)
T ss_pred             EEEcCCchhcc-chHHHHh-------------------------------------hCHHHHHHHHHHHHHhcCCCEEEE
Confidence            99999988776 5998886                                     999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCE
Q psy7366         502 DEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ  554 (566)
Q Consensus       502 DEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~  554 (566)
                      ||||+|||+.++..+.++|+++.+ +.|||++|||++++.. ||++++|++|+
T Consensus       121 DEP~~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~-~d~~~~l~~g~  171 (171)
T cd03228         121 DEATSALDPETEALILEALRALAK-GKTVIVIAHRLSTIRD-ADRIIVLDDGR  171 (171)
T ss_pred             ECCCcCCCHHHHHHHHHHHHHhcC-CCEEEEEecCHHHHHh-CCEEEEEcCCC
Confidence            999999999999999999999854 7999999999999987 99999999984

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=100.00  E-value=5.3e-42  Score=389.17  Aligned_cols=210  Identities=22%  Similarity=0.326  Sum_probs=182.7

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCc
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSY  420 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~  420 (566)
                      .++++|++++|+.  .++++|+|+||+|++||.+||+|+||||||||+|+|+|+++|++|+|.+||.++.. ....+|++
T Consensus       451 ~I~~~nvsf~Y~~--~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~  528 (686)
T TIGR03797       451 AIEVDRVTFRYRP--DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQ  528 (686)
T ss_pred             eEEEEEEEEEcCC--CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhc
Confidence            5899999999963  24679999999999999999999999999999999999999999999999999976 56678899


Q ss_pred             eEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCc-----------cccCcCcCChhHHHHHHHH
Q psy7366         421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHY-----------SDREVRTLSGGNKRKLSTA  489 (566)
Q Consensus       421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGqkqrv~la  489 (566)
                      ||||||++.+|++ |++||+.++..   .+    .+.+.++++..++.+.           .......||||||||++||
T Consensus       529 i~~v~Q~~~lf~g-TI~eNi~~~~~---~~----~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialA  600 (686)
T TIGR03797       529 LGVVLQNGRLMSG-SIFENIAGGAP---LT----LDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIA  600 (686)
T ss_pred             cEEEccCCccCcc-cHHHHHhcCCC---CC----HHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHH
Confidence            9999999999886 99999987521   11    2345666666666432           2233467999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         490 IALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       490 ~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      |||+++|++||||||||+||+.+.+.+.+.|+++   ++|+|+|||+++.+.. ||+|++|++|++++.|+.+++.
T Consensus       601 RAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~~i~~-~D~Iivl~~G~iv~~G~~~~Ll  672 (686)
T TIGR03797       601 RALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLSTIRN-ADRIYVLDAGRVVQQGTYDELM  672 (686)
T ss_pred             HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChHHHHc-CCEEEEEECCEEEEECCHHHHH
Confidence            9999999999999999999999999999999876   6899999999988865 9999999999999999998864

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>KOG0057|consensus

Probab=100.00  E-value=3.7e-42  Score=357.29  Aligned_cols=213  Identities=27%  Similarity=0.440  Sum_probs=186.4

Q ss_pred             CCeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhc
Q psy7366         340 GDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVR  418 (566)
Q Consensus       340 ~~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~  418 (566)
                      +..|+++|++++|+.   ++++|+++||+|++||.+||+|+|||||||++|+|.+++. ++|+|++||.+++. ..+.+|
T Consensus       349 ~~~I~F~dV~f~y~~---k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR  424 (591)
T KOG0057|consen  349 GGSIEFDDVHFSYGP---KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLR  424 (591)
T ss_pred             CCcEEEEeeEEEeCC---CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhh
Confidence            456999999999983   4559999999999999999999999999999999999999 99999999999976 566789


Q ss_pred             CceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCc-----------cccCcCcCChhHHHHHH
Q psy7366         419 SYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHY-----------SDREVRTLSGGNKRKLS  487 (566)
Q Consensus       419 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGqkqrv~  487 (566)
                      +-|||||||..+|++ ||..||.++.     +.. ..+.+.+..+++++.+.           ...+...|||||||||+
T Consensus       425 ~~Ig~VPQd~~LFnd-TIl~NI~YGn-----~sa-s~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvs  497 (591)
T KOG0057|consen  425 QSIGVVPQDSVLFND-TILYNIKYGN-----PSA-SDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVS  497 (591)
T ss_pred             hheeEeCCcccccch-hHHHHhhcCC-----CCc-CHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHH
Confidence            999999999999886 9999998753     111 13346677777777532           23455689999999999


Q ss_pred             HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         488 TAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       488 la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      ||||++++|+|+++|||||+||.++..++.+.+.+ ...++|+|+|-|+++.+.. ||+|++|++|++.+.|+.+++.
T Consensus       498 laRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~-~~~~rTvI~IvH~l~ll~~-~DkI~~l~nG~v~e~gth~ell  573 (591)
T KOG0057|consen  498 LARAFLKDAPILLLDEATSALDSETEREILDMIMD-VMSGRTVIMIVHRLDLLKD-FDKIIVLDNGTVKEYGTHSELL  573 (591)
T ss_pred             HHHHHhcCCCeEEecCcccccchhhHHHHHHHHHH-hcCCCeEEEEEecchhHhc-CCEEEEEECCeeEEeccHHHHh
Confidence            99999999999999999999999999999999988 4458999999999999876 9999999999999999998874

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=100.00  E-value=5.1e-42  Score=383.24  Aligned_cols=211  Identities=21%  Similarity=0.346  Sum_probs=179.3

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCc
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSY  420 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~  420 (566)
                      .++++|+++.|..   ++++|+|+||+|++|+.+||+||||||||||+++|+|++ |++|+|.++|.++.. ....+|++
T Consensus       349 ~i~~~~vsf~~~~---~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~  424 (588)
T PRK11174        349 TIEAEDLEILSPD---GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKH  424 (588)
T ss_pred             eEEEEeeEEeccC---CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhh
Confidence            4899999876542   467999999999999999999999999999999999999 999999999999876 45677889


Q ss_pred             eEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCC-----------CCccccCcCcCChhHHHHHHHH
Q psy7366         421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFAL-----------GHYSDREVRTLSGGNKRKLSTA  489 (566)
Q Consensus       421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgGqkqrv~la  489 (566)
                      |+||||++.+|+. |++||+.++..  ...+    +.+.++++..++           +.........||||||||++||
T Consensus       425 i~~v~Q~~~LF~~-TI~eNI~~g~~--~~~~----eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialA  497 (588)
T PRK11174        425 LSWVGQNPQLPHG-TLRDNVLLGNP--DASD----EQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALA  497 (588)
T ss_pred             eEEecCCCcCCCc-CHHHHhhcCCC--CCCH----HHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHH
Confidence            9999999999986 99999987521  1222    233444444433           3333445567999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         490 IALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       490 ~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      |||+++|+|||||||||+||+.+.+.+.+.|.++. +++|+|++||+++.+.. ||+|++|++|++++.|+.+++.
T Consensus       498 RAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~~i~~-aD~Iivl~~G~i~e~G~~~eL~  571 (588)
T PRK11174        498 RALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLEDLAQ-WDQIWVMQDGQIVQQGDYAELS  571 (588)
T ss_pred             HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChHHHHh-CCEEEEEeCCeEeecCCHHHHH
Confidence            99999999999999999999999999999998874 47999999999988765 9999999999999999988774

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=1.4e-42  Score=332.41  Aligned_cols=207  Identities=31%  Similarity=0.435  Sum_probs=187.7

Q ss_pred             cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecC-CCCCCCCCHH
Q psy7366         359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQF-DALNDRLTPR  437 (566)
Q Consensus       359 ~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~-~~l~~~~tv~  437 (566)
                      ..+++|+||+|++|+++|++|||||||||+||+|+|++.|++|.|.++|.......+.+-+++++|+-. ..++..+.+.
T Consensus        37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~  116 (325)
T COG4586          37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPAL  116 (325)
T ss_pred             hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhh
Confidence            348899999999999999999999999999999999999999999999998766555555678887644 4566677777


Q ss_pred             HHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHH
Q psy7366         438 EHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW  517 (566)
Q Consensus       438 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~  517 (566)
                      +-+.....++.++.....++.+.+.+.++++..++.+++.||-|||.|+.||.+|+++|++|+|||||-|||...+..+.
T Consensus       117 ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir  196 (325)
T COG4586         117 DSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIR  196 (325)
T ss_pred             hhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHH
Confidence            77776666778888888889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         518 TCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       518 ~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      +.+++..++ +.||+++||+++.+..+||||++|+.|+++++|+.+++.
T Consensus       197 ~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~  245 (325)
T COG4586         197 EFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQ  245 (325)
T ss_pred             HHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHH
Confidence            999999765 999999999999999999999999999999999987764

>PLN03211 ABC transporter G-25; Provisional

Probab=100.00  E-value=8.3e-42  Score=381.77  Aligned_cols=214  Identities=24%  Similarity=0.386  Sum_probs=187.8

Q ss_pred             EeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCC--ccEEEEcCccCCCchHHhcCceE
Q psy7366         345 VKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT--SGNAYVMNHSIRDSMDLVRSYIG  422 (566)
Q Consensus       345 ~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~--~G~i~~~g~~~~~~~~~~~~~i~  422 (566)
                      ++|+++.|+    ++.+|+|+|+++++||++||+|||||||||||++|+|..+|+  +|+|.++|+++..   ..++++|
T Consensus        71 ~~~l~~~~~----~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~---~~~~~i~  143 (659)
T PLN03211         71 ISDETRQIQ----ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK---QILKRTG  143 (659)
T ss_pred             cccccccCC----CCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch---hhccceE
Confidence            567788886    567999999999999999999999999999999999999885  8999999998642   2345799


Q ss_pred             EEecCCCCCCCCCHHHHHHHHHHhc---CCCchHHHHHHHHHHHHcCCCCcc-----ccCcCcCChhHHHHHHHHHHHcC
Q psy7366         423 YCPQFDALNDRLTPREHLEFYSRVR---NVPSVLLNTIVNESLNKFALGHYS-----DREVRTLSGGNKRKLSTAIALLG  494 (566)
Q Consensus       423 ~v~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~LSgGqkqrv~la~al~~  494 (566)
                      ||+|++.+++.+||+||+.+....+   .....+..++++++++.+||.+..     ++.+..|||||||||+||++|+.
T Consensus       144 yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~  223 (659)
T PLN03211        144 FVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLI  223 (659)
T ss_pred             EECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHh
Confidence            9999999999999999998865432   122334456688999999997655     34577899999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHH-HHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         495 NPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME-ECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       495 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~-~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      +|+||||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.++||++++|++|++++.|+++++.
T Consensus       224 ~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~  295 (659)
T PLN03211        224 NPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAM  295 (659)
T ss_pred             CCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHH
Confidence            99999999999999999999999999999888999999999998 588999999999999999999988763

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=100.00  E-value=5.6e-41  Score=376.58  Aligned_cols=222  Identities=23%  Similarity=0.319  Sum_probs=197.0

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc-hHH----
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS-MDL----  416 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~----  416 (566)
                      +++++|+++.|+...+.+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ...    
T Consensus         4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~   83 (648)
T PRK10535          4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL   83 (648)
T ss_pred             EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence            689999999996322235699999999999999999999999999999999999999999999999988642 222    


Q ss_pred             hcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCC
Q psy7366         417 VRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNP  496 (566)
Q Consensus       417 ~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p  496 (566)
                      .++.++|+||++.+++.+|+.||+.+.....+.+..+..+.+.++++.+++.+..++++.+||+||+||++|||||+.+|
T Consensus        84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P  163 (648)
T PRK10535         84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGG  163 (648)
T ss_pred             HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence            25789999999999999999999987654434444445567889999999998899999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         497 PLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       497 ~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      ++|||||||+|||+.+++.+.++|++++++|.|+|++||+++.+. .|||+++|++|+++++|++++.
T Consensus       164 ~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~  230 (648)
T PRK10535        164 QVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAA-QAERVIEIRDGEIVRNPPAQEK  230 (648)
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHH-hCCEEEEEECCEEEeecCcccc
Confidence            999999999999999999999999998877999999999999885 6999999999999999998765

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=100.00  E-value=1.3e-41  Score=329.35  Aligned_cols=195  Identities=23%  Similarity=0.356  Sum_probs=159.3

Q ss_pred             EEEeeeEEEeCCcCC-CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCce
Q psy7366         343 LVVKRLFKIYANSKG-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYI  421 (566)
Q Consensus       343 l~~~~l~~~y~~~~~-~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i  421 (566)
                      ++++|+++.|+...+ .+.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|            ++
T Consensus         1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g------------~i   68 (204)
T cd03250           1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG------------SI   68 (204)
T ss_pred             CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC------------EE
Confidence            468999999963100 03699999999999999999999999999999999999999999999998            49


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHH-----HHHHHHHc--CCCCccccCcCcCChhHHHHHHHHHHHcC
Q psy7366         422 GYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTI-----VNESLNKF--ALGHYSDREVRTLSGGNKRKLSTAIALLG  494 (566)
Q Consensus       422 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgGqkqrv~la~al~~  494 (566)
                      +|+||++.+++ .|++||+.+....   ........     +.+.+..+  ++....++++.+||+|||||++|||||+.
T Consensus        69 ~~~~q~~~l~~-~t~~enl~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~  144 (204)
T cd03250          69 AYVSQEPWIQN-GTIRENILFGKPF---DEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYS  144 (204)
T ss_pred             EEEecCchhcc-CcHHHHhccCCCc---CHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhc
Confidence            99999998874 6999999774321   11111111     11122222  23344567789999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCE
Q psy7366         495 NPPLIFLDEPTSGMDPGARRFLWT-CIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ  554 (566)
Q Consensus       495 ~p~lllLDEPt~gLD~~~~~~l~~-~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~  554 (566)
                      +|+++||||||+|||+.+++.+.+ +++++.++|.|||++||+++++.. ||++++|++|+
T Consensus       145 ~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~-~d~i~~l~~G~  204 (204)
T cd03250         145 DADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPH-ADQIVVLDNGR  204 (204)
T ss_pred             CCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhh-CCEEEEEeCCC
Confidence            999999999999999999999988 566666668999999999999988 99999999985

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=100.00  E-value=1.8e-41  Score=331.70  Aligned_cols=199  Identities=20%  Similarity=0.276  Sum_probs=164.8

Q ss_pred             EEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc-----hHHhc
Q psy7366         344 VVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS-----MDLVR  418 (566)
Q Consensus       344 ~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-----~~~~~  418 (566)
                      .+.|+.+.|+.   ...+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...     ....+
T Consensus         2 ~~~~~~~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~   78 (218)
T cd03290           2 QVTNGYFSWGS---GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNR   78 (218)
T ss_pred             eeeeeEEecCC---CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhc
Confidence            47789999963   35799999999999999999999999999999999999999999999999876431     12245


Q ss_pred             CceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCC-----------ccccCcCcCChhHHHHHH
Q psy7366         419 SYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGH-----------YSDREVRTLSGGNKRKLS  487 (566)
Q Consensus       419 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGqkqrv~  487 (566)
                      +.++|++|++.++ ..|++||+.+...   ...    ....+.++.+++.+           ..++++.+|||||||||+
T Consensus        79 ~~i~~~~q~~~~~-~~t~~~nl~~~~~---~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~  150 (218)
T cd03290          79 YSVAYAAQKPWLL-NATVEENITFGSP---FNK----QRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRIC  150 (218)
T ss_pred             ceEEEEcCCCccc-cccHHHHHhhcCc---CCH----HHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHH
Confidence            6799999999877 5799999976421   111    12234445555432           235678999999999999


Q ss_pred             HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHH--HHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCE
Q psy7366         488 TAIALLGNPPLIFLDEPTSGMDPGARRFLWT--CIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ  554 (566)
Q Consensus       488 la~al~~~p~lllLDEPt~gLD~~~~~~l~~--~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~  554 (566)
                      |||||+.+|++|||||||+|||+.++..+++  +++.+.+.|.|+|++||+.+++. .||++++|++|+
T Consensus       151 laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~-~~d~i~~l~~G~  218 (218)
T cd03290         151 VARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLP-HADWIIAMKDGS  218 (218)
T ss_pred             HHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHh-hCCEEEEecCCC
Confidence            9999999999999999999999999999998  66666666899999999999985 699999999884

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=100.00  E-value=1.1e-41  Score=378.54  Aligned_cols=213  Identities=29%  Similarity=0.451  Sum_probs=186.8

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCc
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSY  420 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~  420 (566)
                      .++++|+++.|+.+  ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ....+|+.
T Consensus       338 ~i~~~~v~f~y~~~--~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~  415 (574)
T PRK11160        338 SLTLNNVSFTYPDQ--PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQA  415 (574)
T ss_pred             eEEEEEEEEECCCC--CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhh
Confidence            59999999999631  3569999999999999999999999999999999999999999999999999876 45667889


Q ss_pred             eEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCcccc----------CcCcCChhHHHHHHHHH
Q psy7366         421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDR----------EVRTLSGGNKRKLSTAI  490 (566)
Q Consensus       421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~LSgGqkqrv~la~  490 (566)
                      |+|+||++.+|+. |++||+.++..     . ..++.+.++++..++.++.++          ....||||||||++|||
T Consensus       416 i~~v~Q~~~lf~~-ti~~Ni~~~~~-----~-~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialAR  488 (574)
T PRK11160        416 ISVVSQRVHLFSA-TLRDNLLLAAP-----N-ASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIAR  488 (574)
T ss_pred             eeEEcccchhhcc-cHHHHhhcCCC-----c-cCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHH
Confidence            9999999999876 99999987521     1 123456778888888654433          45679999999999999


Q ss_pred             HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         491 ALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       491 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      |++++|++|||||||++||+.+.+.+.+.|.++. +++|+|++||+++.+.. ||++++|++|++++.|+.+++.
T Consensus       489 all~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~~~~~-~d~i~~l~~G~i~~~g~~~~l~  561 (574)
T PRK11160        489 ALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLTGLEQ-FDRICVMDNGQIIEQGTHQELL  561 (574)
T ss_pred             HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChhHHHh-CCEEEEEeCCeEEEeCCHHHHH
Confidence            9999999999999999999999999999999875 48999999999999865 9999999999999999988764

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=1e-41  Score=331.05  Aligned_cols=188  Identities=29%  Similarity=0.441  Sum_probs=170.3

Q ss_pred             CeEEEeeeEEEeCCcCC-----CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchH
Q psy7366         341 DVLVVKRLFKIYANSKG-----TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMD  415 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~-----~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~  415 (566)
                      .+++++|+++.|..+.+     ...+++||||+|++||++||+|.||||||||-|+|.|+++|++|+|+++|+++.... 
T Consensus         3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-   81 (268)
T COG4608           3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-   81 (268)
T ss_pred             ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc-
Confidence            36899999999975322     247899999999999999999999999999999999999999999999998864311 


Q ss_pred             HhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCC-CccccCcCcCChhHHHHHHHHHHHcC
Q psy7366         416 LVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALG-HYSDREVRTLSGGNKRKLSTAIALLG  494 (566)
Q Consensus       416 ~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqrv~la~al~~  494 (566)
                                                         .....+++.++|+.+|+. +.+++++++|||||+||++|||||+.
T Consensus        82 -----------------------------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal  126 (268)
T COG4608          82 -----------------------------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALAL  126 (268)
T ss_pred             -----------------------------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhh
Confidence                                               223356688999999996 58899999999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         495 NPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       495 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      +|+++++|||+|+||...+.++.++|.+++++ |.|.+++|||+..+..+|||++||+.|+|++.|+.+++
T Consensus       127 ~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~  197 (268)
T COG4608         127 NPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEV  197 (268)
T ss_pred             CCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHH
Confidence            99999999999999999999999999999876 99999999999999999999999999999999998876

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.6e-41  Score=372.54  Aligned_cols=206  Identities=24%  Similarity=0.380  Sum_probs=178.2

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCce
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYI  421 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i  421 (566)
                      +|+++|+++.|+    ++++|+|+||+|.+||+++|+||||||||||+|+|+|+++|++|+|.++|.          ..+
T Consensus         1 ml~i~~ls~~~~----~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~i   66 (530)
T PRK15064          1 MLSTANITMQFG----AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN----------ERL   66 (530)
T ss_pred             CEEEEEEEEEeC----CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC----------CEE
Confidence            478999999996    467999999999999999999999999999999999999999999999873          259


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHH-h----------cCCC---------------------chHHHHHHHHHHHHcCCCC
Q psy7366         422 GYCPQFDALNDRLTPREHLEFYSR-V----------RNVP---------------------SVLLNTIVNESLNKFALGH  469 (566)
Q Consensus       422 ~~v~q~~~l~~~~tv~e~l~~~~~-~----------~~~~---------------------~~~~~~~~~~~l~~~~l~~  469 (566)
                      +|++|++.+++.+|+.||+.+... .          ...+                     ....+.++.++++.+++.+
T Consensus        67 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~  146 (530)
T PRK15064         67 GKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPE  146 (530)
T ss_pred             EEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCh
Confidence            999999988899999999876321 0          0000                     0112356788999999976


Q ss_pred             c-cccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEE
Q psy7366         470 Y-SDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLT  548 (566)
Q Consensus       470 ~-~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~  548 (566)
                      . .++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|.+   .|.|||+||||++++..+||+++
T Consensus       147 ~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~~~~~~~~d~i~  223 (530)
T PRK15064        147 EQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISHDRHFLNSVCTHMA  223 (530)
T ss_pred             hHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeCCHHHHHhhcceEE
Confidence            4 3578999999999999999999999999999999999999999999999864   48999999999999999999999


Q ss_pred             EEECCEE-EEecCcccc
Q psy7366         549 IMVNGQF-TCLGSATHL  564 (566)
Q Consensus       549 ~l~~G~i-~~~g~~~~l  564 (566)
                      +|++|++ ++.|+++++
T Consensus       224 ~l~~g~i~~~~g~~~~~  240 (530)
T PRK15064        224 DLDYGELRVYPGNYDEY  240 (530)
T ss_pred             EEeCCEEEEecCCHHHH
Confidence            9999999 478877644

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=100.00  E-value=9e-42  Score=380.86  Aligned_cols=214  Identities=21%  Similarity=0.354  Sum_probs=181.0

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCc
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSY  420 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~  420 (566)
                      .++++|+++.|+.  +++++|+|+||+|++|+.++|+|+||||||||+++|+|+++|++|+|.++|.++.. ....+++.
T Consensus       341 ~i~~~~vsf~y~~--~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~  418 (582)
T PRK11176        341 DIEFRNVTFTYPG--KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQ  418 (582)
T ss_pred             eEEEEEEEEecCC--CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhh
Confidence            5999999999963  23679999999999999999999999999999999999999999999999999865 44567888


Q ss_pred             eEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCC-----------ccccCcCcCChhHHHHHHHH
Q psy7366         421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGH-----------YSDREVRTLSGGNKRKLSTA  489 (566)
Q Consensus       421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGqkqrv~la  489 (566)
                      |+|+||++.+|+. |++||+.++..     ....++.+.++++..++.+           .......+||||||||++||
T Consensus       419 i~~v~Q~~~lf~~-Ti~~Ni~~~~~-----~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LA  492 (582)
T PRK11176        419 VALVSQNVHLFND-TIANNIAYART-----EQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIA  492 (582)
T ss_pred             ceEEccCceeecc-hHHHHHhcCCC-----CCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHH
Confidence            9999999999875 99999986421     1111234555566555432           22233456999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         490 IALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       490 ~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      |||+++|++|||||||++||+.+...+++.|.++. +++|+|+|||+++.+. .||+|++|++|++++.|+++++.
T Consensus       493 Rall~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~~~~~-~~D~Ii~l~~g~i~e~g~~~~l~  566 (582)
T PRK11176        493 RALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLSTIE-KADEILVVEDGEIVERGTHAELL  566 (582)
T ss_pred             HHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchHHHH-hCCEEEEEECCEEEEeCCHHHHH
Confidence            99999999999999999999999999999998874 4799999999998775 59999999999999999988764

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=100.00  E-value=1.6e-41  Score=379.34  Aligned_cols=211  Identities=18%  Similarity=0.276  Sum_probs=183.4

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCc
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSY  420 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~  420 (566)
                      .++++|+++.|+.   ++++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.++|.++.. ....++++
T Consensus       340 ~i~~~~v~f~y~~---~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~  416 (592)
T PRK10790        340 RIDIDNVSFAYRD---DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQG  416 (592)
T ss_pred             eEEEEEEEEEeCC---CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhh
Confidence            4899999999963   3569999999999999999999999999999999999999999999999999875 45678899


Q ss_pred             eEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCC-----------ccccCcCcCChhHHHHHHHH
Q psy7366         421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGH-----------YSDREVRTLSGGNKRKLSTA  489 (566)
Q Consensus       421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGqkqrv~la  489 (566)
                      |+|+||++.+|++ |+++|+.++.   ..+    ++.+.++++.+|+.+           ........||||||||++||
T Consensus       417 i~~v~Q~~~lF~~-Ti~~NI~~~~---~~~----d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialA  488 (592)
T PRK10790        417 VAMVQQDPVVLAD-TFLANVTLGR---DIS----EEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALA  488 (592)
T ss_pred             eEEEccCCccccc-hHHHHHHhCC---CCC----HHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHH
Confidence            9999999999987 9999998752   112    234566666666532           22234467999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         490 IALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       490 ~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      |||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus       489 RaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~~l~~-~D~ii~l~~G~i~~~G~~~~L~  562 (592)
T PRK10790        489 RVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLSTIVE-ADTILVLHRGQAVEQGTHQQLL  562 (592)
T ss_pred             HHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchHHHHh-CCEEEEEECCEEEEEcCHHHHH
Confidence            999999999999999999999999999999988754 6999999999988764 9999999999999999998764

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=100.00  E-value=9.7e-42  Score=388.64  Aligned_cols=211  Identities=22%  Similarity=0.387  Sum_probs=180.8

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCc
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSY  420 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~  420 (566)
                      .++++|++++|+.  .++++|+|+||+|++||.++|+||||||||||+|+|+|+++|++|+|.++|.++.. ....+|++
T Consensus       477 ~I~~~~vsf~y~~--~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~  554 (710)
T TIGR03796       477 YVELRNITFGYSP--LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANS  554 (710)
T ss_pred             eEEEEEEEEecCC--CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhh
Confidence            5999999999973  23679999999999999999999999999999999999999999999999999865 45668899


Q ss_pred             eEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCC-----------ccccCcCcCChhHHHHHHHH
Q psy7366         421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGH-----------YSDREVRTLSGGNKRKLSTA  489 (566)
Q Consensus       421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGqkqrv~la  489 (566)
                      |+||||++.+|+. |++||+.++..  ..+    .+.+.++++..++.+           ........||||||||++||
T Consensus       555 i~~v~Q~~~lf~g-Ti~eNi~l~~~--~~~----~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLA  627 (710)
T TIGR03796       555 VAMVDQDIFLFEG-TVRDNLTLWDP--TIP----DADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIA  627 (710)
T ss_pred             eeEEecCChhhhc-cHHHHhhCCCC--CCC----HHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHH
Confidence            9999999999875 99999986421  112    233445555555432           23344567999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         490 IALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       490 ~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      |||+++|++||||||||+||+.+.+.+.+.|++   .++|+|+|||+++.+.. ||||++|++|++++.|+.+++.
T Consensus       628 Rall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~~i~~-~D~Iivl~~G~i~~~G~~~~Ll  699 (710)
T TIGR03796       628 RALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLSTIRD-CDEIIVLERGKVVQRGTHEELW  699 (710)
T ss_pred             HHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHHHHHh-CCEEEEEeCCEEEEecCHHHHH
Confidence            999999999999999999999999999999875   48999999999998865 9999999999999999998874

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>KOG0055|consensus

Probab=100.00  E-value=8.9e-42  Score=385.04  Aligned_cols=214  Identities=25%  Similarity=0.428  Sum_probs=182.8

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCc
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSY  420 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~  420 (566)
                      .++++|++++|+.++ +..+|+|+||.|++|+.++|+|||||||||++++|.+++.|++|+|.+||.++.. ..+++|.+
T Consensus       350 ~ief~nV~FsYPsRp-dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~  428 (1228)
T KOG0055|consen  350 EIEFRNVCFSYPSRP-DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQ  428 (1228)
T ss_pred             ceEEEEEEecCCCCC-cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhh
Confidence            589999999999654 4579999999999999999999999999999999999999999999999999976 67788999


Q ss_pred             eEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHc-----------CCCCccccCcCcCChhHHHHHHHH
Q psy7366         421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKF-----------ALGHYSDREVRTLSGGNKRKLSTA  489 (566)
Q Consensus       421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgGqkqrv~la  489 (566)
                      ||.|.|+|.+|. .|++||+.++..     .. ..+.+.++.+..           |++......--+||||||||++||
T Consensus       429 iglV~QePvlF~-~tI~eNI~~G~~-----da-t~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIA  501 (1228)
T KOG0055|consen  429 IGLVSQEPVLFA-TTIRENIRYGKP-----DA-TREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIA  501 (1228)
T ss_pred             cCeeeechhhhc-ccHHHHHhcCCC-----cc-cHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHH
Confidence            999999998776 599999987531     11 111222222222           222233344456999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         490 IALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       490 ~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      |||+.+|+|||||||||+||+++.+.+.+.|.++ .+|+|.|+|+|++..+.. +|++++|++|+|++.|+++||.
T Consensus       502 Ralv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~-~~grTTivVaHRLStIrn-aD~I~v~~~G~IvE~G~h~ELi  575 (1228)
T KOG0055|consen  502 RALVRNPKILLLDEATSALDAESERVVQEALDKA-SKGRTTIVVAHRLSTIRN-ADKIAVMEEGKIVEQGTHDELI  575 (1228)
T ss_pred             HHHHhCCCEEEecCcccccCHHHHHHHHHHHHHh-hcCCeEEEEeeehhhhhc-cCEEEEEECCEEEEecCHHHHH
Confidence            9999999999999999999999999999999876 458999999999999998 9999999999999999999874

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=3.9e-41  Score=323.65  Aligned_cols=192  Identities=24%  Similarity=0.347  Sum_probs=167.3

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCce
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYI  421 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i  421 (566)
                      +++++|+++.|+    ++.+++ +||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++....   ++.+
T Consensus         1 ~l~~~~l~~~~~----~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~---~~~~   72 (195)
T PRK13541          1 MLSLHQLQFNIE----QKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA---KPYC   72 (195)
T ss_pred             CeEEEEeeEEEC----CcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh---hhhE
Confidence            378999999996    344555 99999999999999999999999999999999999999999998875321   3469


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEE
Q psy7366         422 GYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFL  501 (566)
Q Consensus       422 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllL  501 (566)
                      +|++|++.+++.+|+.||+.+......     ..+.+.++++.+++.+..++++.+||||||||++||||++.+|++|||
T Consensus        73 ~~~~~~~~~~~~~tv~~~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lll  147 (195)
T PRK13541         73 TYIGHNLGLKLEMTVFENLKFWSEIYN-----SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLL  147 (195)
T ss_pred             EeccCCcCCCccCCHHHHHHHHHHhcc-----cHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            999999888888999999987543321     134567888999998888999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEE
Q psy7366         502 DEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKL  547 (566)
Q Consensus       502 DEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv  547 (566)
                      ||||+|||+.+++.+.++|++..+.|.|||++||+++++.. +|.+
T Consensus       148 DEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~-~~~~  192 (195)
T PRK13541        148 DEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKS-AQIL  192 (195)
T ss_pred             eCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccch-hhee
Confidence            99999999999999999998776678999999999998876 6655

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=4e-41  Score=372.51  Aligned_cols=206  Identities=26%  Similarity=0.366  Sum_probs=178.7

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCc
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSY  420 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~  420 (566)
                      .+|+++|+++.|+.   ++++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+++.          .+
T Consensus         5 ~~l~i~~l~~~y~~---~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~----------~~   71 (556)
T PRK11819          5 YIYTMNRVSKVVPP---KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG----------IK   71 (556)
T ss_pred             EEEEEeeEEEEeCC---CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC----------CE
Confidence            47999999999961   367999999999999999999999999999999999999999999999752          36


Q ss_pred             eEEEecCCCCCCCCCHHHHHHHHHH-hc-------------CCCc----------------------hHHHHHHHHHHHH
Q psy7366         421 IGYCPQFDALNDRLTPREHLEFYSR-VR-------------NVPS----------------------VLLNTIVNESLNK  464 (566)
Q Consensus       421 i~~v~q~~~l~~~~tv~e~l~~~~~-~~-------------~~~~----------------------~~~~~~~~~~l~~  464 (566)
                      +||+||++.+++.+|+.||+.+... +.             ....                      .....++.++++.
T Consensus        72 i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  151 (556)
T PRK11819         72 VGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDA  151 (556)
T ss_pred             EEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHh
Confidence            9999999999999999999976421 00             1110                      0113467788999


Q ss_pred             cCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhC
Q psy7366         465 FALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALC  544 (566)
Q Consensus       465 ~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~  544 (566)
                      +++.. .++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|+++   +.|||+||||++++..+|
T Consensus       152 ~gl~~-~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~---~~tviiisHd~~~~~~~~  227 (556)
T PRK11819        152 LRCPP-WDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY---PGTVVAVTHDRYFLDNVA  227 (556)
T ss_pred             CCCCc-ccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC---CCeEEEEeCCHHHHHhhc
Confidence            99964 78999999999999999999999999999999999999999999999999887   359999999999999999


Q ss_pred             CEEEEEECCEEE-EecCccc
Q psy7366         545 TKLTIMVNGQFT-CLGSATH  563 (566)
Q Consensus       545 drv~~l~~G~i~-~~g~~~~  563 (566)
                      |++++|++|+++ +.|+.++
T Consensus       228 d~i~~l~~g~i~~~~g~~~~  247 (556)
T PRK11819        228 GWILELDRGRGIPWEGNYSS  247 (556)
T ss_pred             CeEEEEeCCEEEEecCCHHH
Confidence            999999999986 6777654

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=100.00  E-value=5.9e-41  Score=370.96  Aligned_cols=218  Identities=26%  Similarity=0.415  Sum_probs=185.0

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCc
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSY  420 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~  420 (566)
                      .++++|++++|+.  +++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. ....+++.
T Consensus       316 ~i~~~~v~~~y~~--~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~  393 (544)
T TIGR01842       316 HLSVENVTIVPPG--GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKH  393 (544)
T ss_pred             eEEEEEEEEEcCC--CCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhh
Confidence            5999999999963  23579999999999999999999999999999999999999999999999998865 44567889


Q ss_pred             eEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHH-----HHHHHHHHc--CCCCccccCcCcCChhHHHHHHHHHHHc
Q psy7366         421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNT-----IVNESLNKF--ALGHYSDREVRTLSGGNKRKLSTAIALL  493 (566)
Q Consensus       421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGqkqrv~la~al~  493 (566)
                      ++|+||++.+|+. |++||+.++..  ....++..+     .+.+.++.+  |++........+||||||||++||||++
T Consensus       394 i~~v~q~~~lf~~-ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall  470 (544)
T TIGR01842       394 IGYLPQDVELFPG-TVAENIARFGE--NADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALY  470 (544)
T ss_pred             eEEecCCcccccc-cHHHHHhccCC--CCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHh
Confidence            9999999999886 99999975321  122222111     123445555  4555566778899999999999999999


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         494 GNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       494 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      .+|++|||||||++||+.+++.+.+.|.++..+|+|+|++||+++.+ ..||++++|++|++++.|+++++.
T Consensus       471 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~-~~~d~i~~l~~G~i~~~g~~~~l~  541 (544)
T TIGR01842       471 GDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLL-GCVDKILVLQDGRIARFGERDEVL  541 (544)
T ss_pred             cCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHH-HhCCEEEEEECCEEEeeCCHHHHh
Confidence            99999999999999999999999999998866689999999999876 469999999999999999988764

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=1.6e-41  Score=309.99  Aligned_cols=220  Identities=26%  Similarity=0.361  Sum_probs=198.6

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcC-ccCCCc--hHHh
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN-HSIRDS--MDLV  417 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g-~~~~~~--~~~~  417 (566)
                      ..++++|++.+|+    +..+|+++||+|.+||.-+|+|||||||||++.+|+|-.+|+.|+|+++| .++++.  ..-.
T Consensus         4 ~iL~~~~vsVsF~----GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IA   79 (249)
T COG4674           4 IILYLDGVSVSFG----GFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIA   79 (249)
T ss_pred             ceEEEeceEEEEc----ceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHH
Confidence            3689999999997    67899999999999999999999999999999999999999999999999 788663  3345


Q ss_pred             cCceEEEecCCCCCCCCCHHHHHHHHHHh--------cCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHH
Q psy7366         418 RSYIGYCPQFDALNDRLTPREHLEFYSRV--------RNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTA  489 (566)
Q Consensus       418 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~--------~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la  489 (566)
                      |..||-=||-|..|.++||+||+.+....        ........+++++++|+..+|.+..++....||.||||++.|+
T Consensus        80 r~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIG  159 (249)
T COG4674          80 RAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIG  159 (249)
T ss_pred             HhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhh
Confidence            77899999999999999999999875432        1122334467899999999999999999999999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         490 IALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       490 ~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      +.++++|++|+||||++|+-.....+.-++|+.++. ..+|++|-|||.++..++++|-||+.|.+.++|+.+++.
T Consensus       160 Mll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld~v~  234 (249)
T COG4674         160 MLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQ  234 (249)
T ss_pred             eeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEeccHHHHHHhhheeEEEeccceeecccHHHhh
Confidence            999999999999999999999999999999999865 589999999999999999999999999999999998764

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=100.00  E-value=3.3e-41  Score=374.87  Aligned_cols=216  Identities=27%  Similarity=0.447  Sum_probs=184.5

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCc
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSY  420 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~  420 (566)
                      .++++|+++.|+.   ++++|+|+||++++||.+||+||||||||||+++|.|+++|++|+|.+||.+++. ....+|++
T Consensus       328 ~I~f~~vsf~y~~---~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~  404 (567)
T COG1132         328 SIEFENVSFSYPG---KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKR  404 (567)
T ss_pred             eEEEEEEEEEcCC---CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHh
Confidence            4999999999973   4689999999999999999999999999999999999999999999999999976 56678999


Q ss_pred             eEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHH-----HHHHHHc--CCCCccccCcCcCChhHHHHHHHHHHHc
Q psy7366         421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIV-----NESLNKF--ALGHYSDREVRTLSGGNKRKLSTAIALL  493 (566)
Q Consensus       421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LSgGqkqrv~la~al~  493 (566)
                      |+||||++.+|. -|++||+.++...  ..+++..+.+     .+.+..+  |++.........||||||||++||||++
T Consensus       405 I~~V~Qd~~LF~-~TI~~NI~~g~~~--at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall  481 (567)
T COG1132         405 IGIVSQDPLLFS-GTIRENIALGRPD--ATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALL  481 (567)
T ss_pred             ccEEcccceeec-ccHHHHHhcCCCC--CCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHh
Confidence            999999999998 5999999876321  2222222222     2223333  3343444455689999999999999999


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         494 GNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       494 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      ++|++||||||||+||+.+...+.+.+.++. +++|+|+|+|.+..+.. ||+|+||++|++++.|+++++.
T Consensus       482 ~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRlsti~~-aD~IiVl~~G~i~e~G~h~eLl  551 (567)
T COG1132         482 RNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLSTIKN-ADRIIVLDNGRIVERGTHEELL  551 (567)
T ss_pred             cCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHhHHHh-CCEEEEEECCEEEEecCHHHHH
Confidence            9999999999999999999999999999776 56899999999999987 9999999999999999999874

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=100.00  E-value=2.1e-41  Score=384.72  Aligned_cols=213  Identities=26%  Similarity=0.433  Sum_probs=182.8

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCc
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSY  420 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~  420 (566)
                      .++++|++++|+.  +.+++|+|+||+|++||.++|+|+||||||||+|+|+|+++|++|+|.++|.++.. ....+|+.
T Consensus       463 ~I~~~~vsf~Y~~--~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~  540 (694)
T TIGR03375       463 EIEFRNVSFAYPG--QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRN  540 (694)
T ss_pred             eEEEEEEEEEeCC--CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhc
Confidence            5899999999963  24579999999999999999999999999999999999999999999999999876 45678899


Q ss_pred             eEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCC-----------CccccCcCcCChhHHHHHHHH
Q psy7366         421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALG-----------HYSDREVRTLSGGNKRKLSTA  489 (566)
Q Consensus       421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGqkqrv~la  489 (566)
                      ++||||++.+|+. |++||+.+...  ..+    ++.+.++++..++.           .........||||||||++||
T Consensus       541 i~~v~Q~~~lf~~-TI~eNi~~~~~--~~~----~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalA  613 (694)
T TIGR03375       541 IGYVPQDPRLFYG-TLRDNIALGAP--YAD----DEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALA  613 (694)
T ss_pred             cEEECCChhhhhh-hHHHHHhCCCC--CCC----HHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHH
Confidence            9999999999886 99999986421  111    23345555555443           223344568999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         490 IALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       490 ~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      |||+.+|++|||||||++||+.+.+.+.+.|.++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+++++.
T Consensus       614 Rall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~-~~T~iiItHrl~~~~-~~D~iivl~~G~i~e~G~~~eLl  687 (694)
T TIGR03375       614 RALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA-GKTLVLVTHRTSLLD-LVDRIIVMDNGRIVADGPKDQVL  687 (694)
T ss_pred             HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHH-hCCEEEEEeCCEEEeeCCHHHHH
Confidence            999999999999999999999999999999988754 799999999998875 69999999999999999998874

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=100.00  E-value=2e-41  Score=384.71  Aligned_cols=212  Identities=21%  Similarity=0.371  Sum_probs=178.6

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCc
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSY  420 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~  420 (566)
                      .++++|++++|++.+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.. ....++++
T Consensus       478 ~I~~~nVsf~Y~~~~-~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~  556 (711)
T TIGR00958       478 LIEFQDVSFSYPNRP-DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQ  556 (711)
T ss_pred             eEEEEEEEEECCCCC-CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhh
Confidence            599999999997321 3579999999999999999999999999999999999999999999999999865 45667889


Q ss_pred             eEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCC-----------ccccCcCcCChhHHHHHHHH
Q psy7366         421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGH-----------YSDREVRTLSGGNKRKLSTA  489 (566)
Q Consensus       421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGqkqrv~la  489 (566)
                      |+||||++.+|+. |++||+.++..  ..+    ++.+.++++..++.+           .......+||||||||++||
T Consensus       557 i~~v~Q~~~lF~g-TIreNI~~g~~--~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalA  629 (711)
T TIGR00958       557 VALVGQEPVLFSG-SVRENIAYGLT--DTP----DEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIA  629 (711)
T ss_pred             ceEEecCcccccc-CHHHHHhcCCC--CCC----HHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHH
Confidence            9999999999875 99999987531  111    233455566655432           22334467999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         490 IALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       490 ~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      ||++++|+|||||||||+||+.+.+.+.+ ..  ..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus       630 RALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~~i~~-aD~IivL~~G~ive~Gt~~eL~  701 (711)
T TIGR00958       630 RALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLSTVER-ADQILVLKKGSVVEMGTHKQLM  701 (711)
T ss_pred             HHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHHHHHh-CCEEEEEECCEEEEeeCHHHHH
Confidence            99999999999999999999999999888 22  2358999999999998764 9999999999999999998874

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.5e-41  Score=322.87  Aligned_cols=216  Identities=25%  Similarity=0.370  Sum_probs=190.0

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC--chHHhc
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD--SMDLVR  418 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~--~~~~~~  418 (566)
                      .+|+++|++..|+    ++++|+|+|++|++||.++|+|||||||||||++++|.++|++|.+.+.|+...+  ....+|
T Consensus        30 ~li~l~~v~v~r~----gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elr  105 (257)
T COG1119          30 PLIELKNVSVRRN----GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELR  105 (257)
T ss_pred             ceEEecceEEEEC----CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHH
Confidence            4699999999997    7889999999999999999999999999999999999999999999999998754  237889


Q ss_pred             CceEEEecC--CCCCCCCCHHHHHHHH--HH--hcC-CCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHH
Q psy7366         419 SYIGYCPQF--DALNDRLTPREHLEFY--SR--VRN-VPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIA  491 (566)
Q Consensus       419 ~~i~~v~q~--~~l~~~~tv~e~l~~~--~~--~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~a  491 (566)
                      ++||||...  ..+.++.+++|-+.-+  ..  ++. ........++..+++.+++.+..+++..+||-||||||.||||
T Consensus       106 k~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRA  185 (257)
T COG1119         106 KRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARA  185 (257)
T ss_pred             HHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHH
Confidence            999999865  3355567787766322  11  121 2345566788999999999999999999999999999999999


Q ss_pred             HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecC
Q psy7366         492 LLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE--GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS  560 (566)
Q Consensus       492 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~--g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~  560 (566)
                      |+.+|++|||||||+|||...++.+.+.|.+++..  +.++|+|||..+++....++++.+++|+++.+|.
T Consensus       186 Lv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~  256 (257)
T COG1119         186 LVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK  256 (257)
T ss_pred             HhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence            99999999999999999999999999999998765  7899999999999999999999999999998874

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=2.5e-41  Score=314.92  Aligned_cols=180  Identities=23%  Similarity=0.282  Sum_probs=163.1

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCc----ccccccceeEEcCCCCCCCCCCHHHHHHHHHH-hcCCChhhHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPT----IDKNLSYIGYCPQFDALNDRLTPREHLEFYSR-VRNVPSVLLNTIVN   72 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~----~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~   72 (566)
                      +||||++|+++++-.+++   .+.+....    ....++.+|+|||++.|||.+||.||+..+.. ..+.++.++++++.
T Consensus        39 SGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~  118 (240)
T COG1126          39 SGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKAL  118 (240)
T ss_pred             CCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHH
Confidence            599999999999988776   24442221    11235679999999999999999999988754 46899999999999


Q ss_pred             HHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhH
Q psy7366          73 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEE  152 (566)
Q Consensus        73 ~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~  152 (566)
                      ++|+++||.+..+.++.+|||||||||+|||||+.+|+++|+|||||+|||+-+.++.+.+++|+++|.|.|++||++.|
T Consensus       119 ~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~F  198 (240)
T COG1126         119 ELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGF  198 (240)
T ss_pred             HHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy7366         153 CEALCTKLTIMVNGQFTCLGSATHLKSK  180 (566)
Q Consensus       153 ~~~~~d~i~vl~~G~i~~~g~~~~~~~~  180 (566)
                      +.++||||++|++|+++..|+++++...
T Consensus       199 Ar~VadrviFmd~G~iie~g~p~~~f~~  226 (240)
T COG1126         199 AREVADRVIFMDQGKIIEEGPPEEFFDN  226 (240)
T ss_pred             HHHhhheEEEeeCCEEEEecCHHHHhcC
Confidence            9999999999999999999999998654

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.1e-41  Score=353.40  Aligned_cols=213  Identities=26%  Similarity=0.432  Sum_probs=186.0

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCc
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSY  420 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~  420 (566)
                      .++++|++++|++.  ..++|+|+||++.+||.++|+|++|||||||+++|+|.++|++|+|.++|.++.. ....+++.
T Consensus       336 ~l~~~~vsF~y~~~--~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~  413 (573)
T COG4987         336 ALELRNVSFTYPGQ--QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRET  413 (573)
T ss_pred             eeeeccceeecCCC--ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHH
Confidence            79999999999842  3479999999999999999999999999999999999999999999999999876 34457888


Q ss_pred             eEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCc-----------cccCcCcCChhHHHHHHHH
Q psy7366         421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHY-----------SDREVRTLSGGNKRKLSTA  489 (566)
Q Consensus       421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGqkqrv~la  489 (566)
                      +++++|.+++|.+ |+++|+.+..     +. ...+.+.++++.+||.++           .+.-...|||||+||++||
T Consensus       414 i~vl~Qr~hlF~~-Tlr~NL~lA~-----~~-AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlA  486 (573)
T COG4987         414 ISVLTQRVHLFSG-TLRDNLRLAN-----PD-ASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALA  486 (573)
T ss_pred             HhhhccchHHHHH-HHHHHHhhcC-----CC-CCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHH
Confidence            9999999999987 9999997642     11 123446677888877543           2344568999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         490 IALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       490 ~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      |+|+++.+++||||||.|||+.+.++++++|.+..+ |+|+|+|||++..++. ||||++|++|+++++|++.++.
T Consensus       487 R~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~-~kTll~vTHrL~~le~-~drIivl~~Gkiie~G~~~~Ll  560 (573)
T COG4987         487 RALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLRGLER-MDRIIVLDNGKIIEEGTHAELL  560 (573)
T ss_pred             HHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc-CCeEEEEecccccHhh-cCEEEEEECCeeeecCCHHhhh
Confidence            999999999999999999999999999999987654 8999999999999875 9999999999999999988764

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=100.00  E-value=4.8e-41  Score=382.68  Aligned_cols=212  Identities=22%  Similarity=0.346  Sum_probs=181.1

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCc
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSY  420 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~  420 (566)
                      .++++|++++|+.   ++++|+|+||+|++|+.+||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|++
T Consensus       473 ~I~~~~vsf~y~~---~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~  549 (708)
T TIGR01193       473 DIVINDVSYSYGY---GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQF  549 (708)
T ss_pred             cEEEEEEEEEcCC---CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHh
Confidence            5899999999962   4579999999999999999999999999999999999999999999999999865 45677889


Q ss_pred             eEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCC-----------CccccCcCcCChhHHHHHHHH
Q psy7366         421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALG-----------HYSDREVRTLSGGNKRKLSTA  489 (566)
Q Consensus       421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGqkqrv~la  489 (566)
                      ||||||++.+|+. |++||+.++... ..+    .+.+.++++..++.           .........||||||||++||
T Consensus       550 i~~v~Q~~~lf~g-TI~eNi~l~~~~-~~~----~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialA  623 (708)
T TIGR01193       550 INYLPQEPYIFSG-SILENLLLGAKE-NVS----QDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALA  623 (708)
T ss_pred             eEEEecCceehhH-HHHHHHhccCCC-CCC----HHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHH
Confidence            9999999999886 999999875211 112    22344555554442           223345568999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         490 IALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       490 ~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      ||++++|++|||||||++||+.+.+.+++.|.++  +|+|+|+|||+++.+. .||+|++|++|++++.|+.+++.
T Consensus       624 Rall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~~~~-~~D~i~~l~~G~i~~~G~~~~L~  696 (708)
T TIGR01193       624 RALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLSVAK-QSDKIIVLDHGKIIEQGSHDELL  696 (708)
T ss_pred             HHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchHHHH-cCCEEEEEECCEEEEECCHHHHH
Confidence            9999999999999999999999999999999875  4799999999998875 59999999999999999988764

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=100.00  E-value=1.1e-40  Score=331.20  Aligned_cols=180  Identities=26%  Similarity=0.391  Sum_probs=157.7

Q ss_pred             ceeeeeeEEEe-----CCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCC
Q psy7366         360 PAVNQISFGVG-----RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRL  434 (566)
Q Consensus       360 ~~l~~isl~i~-----~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~  434 (566)
                      ..+++++|++.     +||+++|+||||||||||+++|+|+++|++|+|.++|.           .++|++|++..++.+
T Consensus         8 ~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~-----------~i~~~~q~~~~~~~~   76 (246)
T cd03237           8 KTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD-----------TVSYKPQYIKADYEG   76 (246)
T ss_pred             cccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc-----------eEEEecccccCCCCC
Confidence            35666777765     79999999999999999999999999999999999984           499999998877778


Q ss_pred             CHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHH
Q psy7366         435 TPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARR  514 (566)
Q Consensus       435 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~  514 (566)
                      |+.||+.+......  .  ......++++.+++.+..++++.+|||||||||+|||||+.+|+++||||||++||+.++.
T Consensus        77 tv~e~l~~~~~~~~--~--~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~  152 (246)
T cd03237          77 TVRDLLSSITKDFY--T--HPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRL  152 (246)
T ss_pred             CHHHHHHHHhhhcc--c--cHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence            99999876432111  1  1223567899999988889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCE
Q psy7366         515 FLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQ  554 (566)
Q Consensus       515 ~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~  554 (566)
                      .+.++|++++++ |+|||++|||++++..+||++++|+++.
T Consensus       153 ~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~  193 (246)
T cd03237         153 MASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEP  193 (246)
T ss_pred             HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCC
Confidence            999999998764 8999999999999999999999997654

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=100.00  E-value=1.5e-40  Score=311.19  Aligned_cols=164  Identities=25%  Similarity=0.328  Sum_probs=147.9

Q ss_pred             EEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceE
Q psy7366         343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIG  422 (566)
Q Consensus       343 l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~  422 (566)
                      ++++|+++.|+.   ++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.          ++++
T Consensus         1 i~~~~~~~~~~~---~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~----------~~i~   67 (166)
T cd03223           1 IELENLSLATPD---GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG----------EDLL   67 (166)
T ss_pred             CEEEEEEEEcCC---CCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC----------ceEE
Confidence            468899999952   356999999999999999999999999999999999999999999999873          3699


Q ss_pred             EEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEe
Q psy7366         423 YCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLD  502 (566)
Q Consensus       423 ~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLD  502 (566)
                      |++|++.++ ..|+.||+.+.                              ++.+||||||||++|||||+.+|++||||
T Consensus        68 ~~~q~~~~~-~~tv~~nl~~~------------------------------~~~~LS~G~~~rv~laral~~~p~~lllD  116 (166)
T cd03223          68 FLPQRPYLP-LGTLREQLIYP------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLD  116 (166)
T ss_pred             EECCCCccc-cccHHHHhhcc------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence            999998765 57999998642                              46899999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCE
Q psy7366         503 EPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ  554 (566)
Q Consensus       503 EPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~  554 (566)
                      |||+|||+.+++.+.++|+++   +.|+|++|||.+.. .+||++++|+++.
T Consensus       117 EPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~~~-~~~d~i~~l~~~~  164 (166)
T cd03223         117 EATSALDEESEDRLYQLLKEL---GITVISVGHRPSLW-KFHDRVLDLDGEG  164 (166)
T ss_pred             CCccccCHHHHHHHHHHHHHh---CCEEEEEeCChhHH-hhCCEEEEEcCCC
Confidence            999999999999999999876   68999999999875 6899999998764

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=100.00  E-value=1.6e-40  Score=367.53  Aligned_cols=206  Identities=25%  Similarity=0.365  Sum_probs=176.8

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCc
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSY  420 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~  420 (566)
                      .+++++|+++.|+.   ++++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+++.          ..
T Consensus         3 ~~i~~~nls~~~~~---~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~----------~~   69 (552)
T TIGR03719         3 YIYTMNRVSKVVPP---KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPG----------IK   69 (552)
T ss_pred             EEEEEeeEEEecCC---CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC----------CE
Confidence            36899999999951   357999999999999999999999999999999999999999999998752          36


Q ss_pred             eEEEecCCCCCCCCCHHHHHHHHHHh-c-------------CCCchH----------------------HHHHHHHHHHH
Q psy7366         421 IGYCPQFDALNDRLTPREHLEFYSRV-R-------------NVPSVL----------------------LNTIVNESLNK  464 (566)
Q Consensus       421 i~~v~q~~~l~~~~tv~e~l~~~~~~-~-------------~~~~~~----------------------~~~~~~~~l~~  464 (566)
                      |||+||++.+++++|+.||+.+.... .             ..+...                      ...++.++++.
T Consensus        70 i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  149 (552)
T TIGR03719        70 VGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDA  149 (552)
T ss_pred             EEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhh
Confidence            99999999999999999999864210 0             011110                      12346677888


Q ss_pred             cCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhC
Q psy7366         465 FALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALC  544 (566)
Q Consensus       465 ~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~  544 (566)
                      +++.. .++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+++   +.|||+||||++++..+|
T Consensus       150 ~~l~~-~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvIiisHd~~~~~~~~  225 (552)
T TIGR03719       150 LRCPP-WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVVAVTHDRYFLDNVA  225 (552)
T ss_pred             CCCCc-ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEEEEeCCHHHHHhhc
Confidence            88854 68899999999999999999999999999999999999999999999999876   469999999999999999


Q ss_pred             CEEEEEECCEEE-EecCccc
Q psy7366         545 TKLTIMVNGQFT-CLGSATH  563 (566)
Q Consensus       545 drv~~l~~G~i~-~~g~~~~  563 (566)
                      |++++|++|+++ +.|+.++
T Consensus       226 d~v~~l~~g~i~~~~g~~~~  245 (552)
T TIGR03719       226 GWILELDRGRGIPWEGNYSS  245 (552)
T ss_pred             CeEEEEECCEEEEecCCHHH
Confidence            999999999976 6777664

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=100.00  E-value=2e-40  Score=369.04  Aligned_cols=216  Identities=22%  Similarity=0.318  Sum_probs=180.7

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCc
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSY  420 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~  420 (566)
                      .++++|++++|+.   ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. ....+++.
T Consensus       334 ~i~~~~v~~~y~~---~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~  410 (585)
T TIGR01192       334 AVEFRHITFEFAN---SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKS  410 (585)
T ss_pred             eEEEEEEEEECCC---CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhh
Confidence            5999999999963   3568999999999999999999999999999999999999999999999998865 44567888


Q ss_pred             eEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHH-----HHHHHHc--CCCCccccCcCcCChhHHHHHHHHHHHc
Q psy7366         421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIV-----NESLNKF--ALGHYSDREVRTLSGGNKRKLSTAIALL  493 (566)
Q Consensus       421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LSgGqkqrv~la~al~  493 (566)
                      ++|+||++.+|+ .|++||+.++..  ....++..+.+     .+.+..+  |++.........||||||||++|||||+
T Consensus       411 i~~v~q~~~lf~-~ti~~Ni~~~~~--~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall  487 (585)
T TIGR01192       411 IATVFQDAGLFN-RSIRENIRLGRE--GATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAIL  487 (585)
T ss_pred             eEEEccCCccCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHh
Confidence            999999999887 599999987521  11222211111     1222222  3444456677899999999999999999


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         494 GNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       494 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      .+|++|||||||++||+.+.+.+.+.|.++. +++|+|++||+++.+. .||++++|++|++++.|+.+++.
T Consensus       488 ~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~  557 (585)
T TIGR01192       488 KNAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLSTVR-NADLVLFLDQGRLIEKGSFQELI  557 (585)
T ss_pred             cCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChHHHH-cCCEEEEEECCEEEEECCHHHHH
Confidence            9999999999999999999999999998874 4899999999999985 49999999999999999988763

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=100.00  E-value=2e-40  Score=370.16  Aligned_cols=212  Identities=23%  Similarity=0.388  Sum_probs=179.8

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCc
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSY  420 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~  420 (566)
                      .++++|+++.|+.   ++++|+|+||++++||+++|+|+||||||||+|+|+|+++|++|+|.++|.++.. ....++++
T Consensus       334 ~I~~~~vsf~y~~---~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~  410 (588)
T PRK13657        334 AVEFDDVSFSYDN---SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRN  410 (588)
T ss_pred             eEEEEEEEEEeCC---CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhh
Confidence            5999999999962   3569999999999999999999999999999999999999999999999999876 45667889


Q ss_pred             eEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCC-----------CCccccCcCcCChhHHHHHHHH
Q psy7366         421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFAL-----------GHYSDREVRTLSGGNKRKLSTA  489 (566)
Q Consensus       421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgGqkqrv~la  489 (566)
                      |+|+||++.+|++ |++||+.++..  ...+    +.+.++++..++           +.........||||||||++||
T Consensus       411 i~~v~Q~~~lf~~-Ti~~Ni~~~~~--~~~d----~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialA  483 (588)
T PRK13657        411 IAVVFQDAGLFNR-SIEDNIRVGRP--DATD----EEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIA  483 (588)
T ss_pred             eEEEecCcccccc-cHHHHHhcCCC--CCCH----HHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHH
Confidence            9999999999875 99999987521  1122    223444444443           2222334557999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         490 IALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       490 ~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      |||+++|++|||||||++||+.+.+.+++.|.++. .++|+|+|||+.+.+. .||++++|++|++++.|+.+++.
T Consensus       484 Rall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr~~~~~-~~D~ii~l~~G~i~~~g~~~~l~  557 (588)
T PRK13657        484 RALLKDPPILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLSTVR-NADRILVFDNGRVVESGSFDELV  557 (588)
T ss_pred             HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEecHHHHH-hCCEEEEEECCEEEEeCCHHHHH
Confidence            99999999999999999999999999999998874 4799999999998875 59999999999999999987763

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=100.00  E-value=2.5e-40  Score=331.20  Aligned_cols=225  Identities=25%  Similarity=0.363  Sum_probs=199.3

Q ss_pred             CCeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCC-----CccEEEEcCccCCC-c
Q psy7366         340 GDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIRD-S  413 (566)
Q Consensus       340 ~~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~-----~~G~i~~~g~~~~~-~  413 (566)
                      ...|.++|++..|....+...++++|||+|++||.+||+|.+|||||-..+.|+|+++.     .+|+|.++|+++-. +
T Consensus         4 ~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~s   83 (534)
T COG4172           4 MPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAAS   83 (534)
T ss_pred             CcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCC
Confidence            34799999999997655677899999999999999999999999999999999999874     37899999999843 2


Q ss_pred             h---HHhc-CceEEEecCC--CCCCCCCHHHHHHHHHHh-cCCCchHHHHHHHHHHHHcCCCC---ccccCcCcCChhHH
Q psy7366         414 M---DLVR-SYIGYCPQFD--ALNDRLTPREHLEFYSRV-RNVPSVLLNTIVNESLNKFALGH---YSDREVRTLSGGNK  483 (566)
Q Consensus       414 ~---~~~~-~~i~~v~q~~--~l~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~LSgGqk  483 (566)
                      .   +.+| .+|+++||+|  ++.|-.|+...+.-..++ ++......++++.++|+.+|+.+   .++.+|++||||||
T Consensus        84 e~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqR  163 (534)
T COG4172          84 ERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQR  163 (534)
T ss_pred             HHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchh
Confidence            2   2233 6899999998  478888998877665554 46677788889999999999964   56899999999999


Q ss_pred             HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcc
Q psy7366         484 RKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSAT  562 (566)
Q Consensus       484 qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~  562 (566)
                      |||+||+||+.+|++||.||||++||...+.+|+++|++++++ |.++++||||+..+.+++|||+||.+|++++.|+.+
T Consensus       164 QRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~t~  243 (534)
T COG4172         164 QRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTE  243 (534)
T ss_pred             hHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeecCcHH
Confidence            9999999999999999999999999999999999999999877 999999999999999999999999999999999877


Q ss_pred             cc
Q psy7366         563 HL  564 (566)
Q Consensus       563 ~l  564 (566)
                      ++
T Consensus       244 ~l  245 (534)
T COG4172         244 TL  245 (534)
T ss_pred             HH
Confidence            54

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=100.00  E-value=5.8e-40  Score=331.68  Aligned_cols=198  Identities=22%  Similarity=0.347  Sum_probs=164.2

Q ss_pred             CCeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcC
Q psy7366         340 GDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRS  419 (566)
Q Consensus       340 ~~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~  419 (566)
                      ...|+++|+++.      .+.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|            
T Consensus        37 ~~~l~i~nls~~------~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g------------   98 (282)
T cd03291          37 DNNLFFSNLCLV------GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG------------   98 (282)
T ss_pred             CCeEEEEEEEEe------cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------
Confidence            456999999984      24699999999999999999999999999999999999999999999987            


Q ss_pred             ceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCC-----------ccccCcCcCChhHHHHHHH
Q psy7366         420 YIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGH-----------YSDREVRTLSGGNKRKLST  488 (566)
Q Consensus       420 ~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGqkqrv~l  488 (566)
                      .++|++|++.+++. |+.||+.+....   ..    ..+.+.++.+++.+           ..++++.+||||||||++|
T Consensus        99 ~i~yv~q~~~l~~~-tv~enl~~~~~~---~~----~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~l  170 (282)
T cd03291          99 RISFSSQFSWIMPG-TIKENIIFGVSY---DE----YRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISL  170 (282)
T ss_pred             EEEEEeCccccccc-CHHHHhhccccc---CH----HHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHH
Confidence            39999999988875 999999764211   11    11122333333321           2345578999999999999


Q ss_pred             HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         489 AIALLGNPPLIFLDEPTSGMDPGARRFLWTCI-ERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       489 a~al~~~p~lllLDEPt~gLD~~~~~~l~~~l-~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      ||||+.+|++|||||||+|||+.++..+.+.+ +.+. ++.|||++|||++++. .||++++|++|++++.|+++++.
T Consensus       171 AraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~  246 (282)
T cd03291         171 ARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFSELQ  246 (282)
T ss_pred             HHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChHHHH-hCCEEEEEECCEEEEECCHHHHH
Confidence            99999999999999999999999999998865 5554 4799999999999985 79999999999999999887653

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=100.00  E-value=1e-40  Score=371.71  Aligned_cols=213  Identities=23%  Similarity=0.414  Sum_probs=181.3

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCc
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSY  420 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~  420 (566)
                      .++++|++++|+..  ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. ....++++
T Consensus       330 ~i~~~~v~f~y~~~--~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~  407 (571)
T TIGR02203       330 DVEFRNVTFRYPGR--DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQ  407 (571)
T ss_pred             eEEEEEEEEEcCCC--CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhh
Confidence            59999999999632  3579999999999999999999999999999999999999999999999998865 45567889


Q ss_pred             eEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCc-------cc----cCcCcCChhHHHHHHHH
Q psy7366         421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHY-------SD----REVRTLSGGNKRKLSTA  489 (566)
Q Consensus       421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~----~~~~~LSgGqkqrv~la  489 (566)
                      ++|+||++.+|+. |++||+.++.     ++...++.+.++++.+++.+.       +|    .....||||||||++||
T Consensus       408 i~~v~Q~~~lf~~-Ti~~Ni~~~~-----~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLA  481 (571)
T TIGR02203       408 VALVSQDVVLFND-TIANNIAYGR-----TEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIA  481 (571)
T ss_pred             ceEEccCcccccc-cHHHHHhcCC-----CCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHH
Confidence            9999999999876 9999998652     101123445666666665322       22    23357999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         490 IALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       490 ~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      ||++.+|++|||||||++||+.+.+.+++.|.++. +++|+|+|||+.+.+ ..||+|++|++|++++.|+.+++
T Consensus       482 Rall~~~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~~~~-~~~D~ii~l~~g~i~~~g~~~~l  554 (571)
T TIGR02203       482 RALLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRLSTI-EKADRIVVMDDGRIVERGTHNEL  554 (571)
T ss_pred             HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhhHHH-HhCCEEEEEeCCEEEeeCCHHHH
Confidence            99999999999999999999999999999998874 479999999999776 56999999999999999998876

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>KOG0059|consensus

Probab=100.00  E-value=5.1e-40  Score=378.64  Aligned_cols=223  Identities=56%  Similarity=0.946  Sum_probs=210.1

Q ss_pred             CCeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc--hHHh
Q psy7366         340 GDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS--MDLV  417 (566)
Q Consensus       340 ~~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~--~~~~  417 (566)
                      .+.+.++|+++.|+..   +.+++++||.|++|||.|++|+|||||||++|+|.|..+|++|+++++|.++...  ....
T Consensus       562 ~~~~~~~~L~k~y~~~---~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~  638 (885)
T KOG0059|consen  562 SSALVLNNLSKVYGGK---DGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQV  638 (885)
T ss_pred             cceEEEcceeeeecch---hhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhh
Confidence            3689999999999742   1289999999999999999999999999999999999999999999999998763  3347


Q ss_pred             cCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCC
Q psy7366         418 RSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPP  497 (566)
Q Consensus       418 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~  497 (566)
                      ++.+||+||+..+++.+|.+|++.+++++++++.....+.++.+++.++|.+..+++++.+|||+|+|+.+|.|++.+|+
T Consensus       639 ~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~  718 (885)
T KOG0059|consen  639 RKQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPS  718 (885)
T ss_pred             hhhcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCC
Confidence            88999999999999999999999999999999988888889999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         498 LIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       498 lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      +++|||||+|+||.+|+.+|+++.+++++|++||++||.++|++.+|||+.+|.+|++.+.|++++++
T Consensus       719 vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LK  786 (885)
T KOG0059|consen  719 VILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELK  786 (885)
T ss_pred             EEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHH
Confidence            99999999999999999999999999988779999999999999999999999999999999999886

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=100.00  E-value=4.5e-40  Score=320.36  Aligned_cols=189  Identities=19%  Similarity=0.212  Sum_probs=161.0

Q ss_pred             ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEE-EcCccCCCchHHhcCceEEEecCCCCCCCCCHHH
Q psy7366         360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY-VMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPRE  438 (566)
Q Consensus       360 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~-~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e  438 (566)
                      ++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|. ++|..+            .+.+.+.+++.+|+.|
T Consensus         1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~------------~~~~~~~l~~~ltv~e   68 (213)
T PRK15177          1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL------------PLGANSFILPGLTGEE   68 (213)
T ss_pred             CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee------------ccccccccCCcCcHHH
Confidence            379999999999999999999999999999999999999999997 776432            1234566888999999


Q ss_pred             HHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHH
Q psy7366         439 HLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT  518 (566)
Q Consensus       439 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~  518 (566)
                      |+.+....++......   ...+.+.+++....++++.+||+|||||++|||||+.+|+++||||||+++|+.++..+.+
T Consensus        69 nl~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~  145 (213)
T PRK15177         69 NARMMASLYGLDGDEF---SHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQA  145 (213)
T ss_pred             HHHHHHHHcCCCHHHH---HHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHH
Confidence            9988766544433222   2334456778777889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         519 CIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       519 ~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      .+.+..+ +.++|++||+++++..+||++++|++|++++.++.++.
T Consensus       146 ~l~~~~~-~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  190 (213)
T PRK15177        146 ALACQLQ-QKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQA  190 (213)
T ss_pred             HHHHHhh-CCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHH
Confidence            8865433 46899999999999999999999999999999987765

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=100.00  E-value=4.8e-40  Score=365.26  Aligned_cols=213  Identities=21%  Similarity=0.325  Sum_probs=180.8

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCc
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSY  420 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~  420 (566)
                      .++++|++++|+.  +++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. ....+++.
T Consensus       313 ~I~~~~v~~~y~~--~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~  390 (569)
T PRK10789        313 ELDVNIRQFTYPQ--TDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSR  390 (569)
T ss_pred             cEEEEEEEEECCC--CCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhh
Confidence            4899999999963  23579999999999999999999999999999999999999999999999998865 44567888


Q ss_pred             eEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCC-----------CCccccCcCcCChhHHHHHHHH
Q psy7366         421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFAL-----------GHYSDREVRTLSGGNKRKLSTA  489 (566)
Q Consensus       421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgGqkqrv~la  489 (566)
                      ++|+||++.+|+. |++||+.++..  ....    +.+.++++..++           +...+.....||||||||++||
T Consensus       391 i~~v~q~~~lf~~-ti~~Ni~~~~~--~~~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lA  463 (569)
T PRK10789        391 LAVVSQTPFLFSD-TVANNIALGRP--DATQ----QEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIA  463 (569)
T ss_pred             eEEEccCCeeccc-cHHHHHhcCCC--CCCH----HHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHH
Confidence            9999999999876 99999986421  1111    223444444443           2233455678999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         490 IALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       490 ~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      |||+.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+. .||++++|++|++++.|+.+++.
T Consensus       464 Rall~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~  537 (569)
T PRK10789        464 RALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLSALT-EASEILVMQHGHIAQRGNHDQLA  537 (569)
T ss_pred             HHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchhHHH-cCCEEEEEeCCEEEEecCHHHHH
Confidence            99999999999999999999999999999999874 5899999999998875 59999999999999999987763

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=8e-40  Score=311.63  Aligned_cols=195  Identities=26%  Similarity=0.420  Sum_probs=182.5

Q ss_pred             CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecC-CCCCCCCCH
Q psy7366         358 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQF-DALNDRLTP  436 (566)
Q Consensus       358 ~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~-~~l~~~~tv  436 (566)
                      ..++|+||||++++||.+||+|+||||||||||+|+|.++|++|+|.++|+            ++++..- ..+.|++|.
T Consensus        39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~------------v~~li~lg~Gf~pelTG  106 (249)
T COG1134          39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGK------------VAPLIELGAGFDPELTG  106 (249)
T ss_pred             eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcce------------EehhhhcccCCCcccch
Confidence            456999999999999999999999999999999999999999999999995            4443332 356788999


Q ss_pred             HHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHH
Q psy7366         437 REHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFL  516 (566)
Q Consensus       437 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l  516 (566)
                      +||+.+...+.++..++.+++++++.+.-+|.++.++|+.++|.||+-|+++|.|...+|+|||+||-.+--|+.-++.-
T Consensus       107 reNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~  186 (249)
T COG1134         107 RENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKC  186 (249)
T ss_pred             HHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHH
Confidence            99999998888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         517 WTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       517 ~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      .+.++++.+++.|||+||||++.+.++|||+++|++|++...|+++++
T Consensus       187 ~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~v  234 (249)
T COG1134         187 LERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEV  234 (249)
T ss_pred             HHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHH
Confidence            999999988889999999999999999999999999999999999875

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=100.00  E-value=2.3e-40  Score=376.09  Aligned_cols=213  Identities=23%  Similarity=0.409  Sum_probs=182.0

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCc
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSY  420 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~  420 (566)
                      .++++|+++.|+.  +.+.+|+|+||+|++|+.++|+|+||||||||+|+|+|+++|++|+|.++|.++.. ....+|+.
T Consensus       455 ~i~~~~vsf~y~~--~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~  532 (694)
T TIGR01846       455 AITFENIRFRYAP--DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQ  532 (694)
T ss_pred             eEEEEEEEEEcCC--CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHh
Confidence            5999999999963  23569999999999999999999999999999999999999999999999999876 45667889


Q ss_pred             eEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcC-----------CCCccccCcCcCChhHHHHHHHH
Q psy7366         421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFA-----------LGHYSDREVRTLSGGNKRKLSTA  489 (566)
Q Consensus       421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSgGqkqrv~la  489 (566)
                      ++||||++.+|+. |++||+.+...  ..+.    +.+.++++..+           ++........+||||||||++||
T Consensus       533 i~~v~q~~~lf~~-ti~eNi~~~~~--~~~~----~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lA  605 (694)
T TIGR01846       533 MGVVLQENVLFSR-SIRDNIALCNP--GAPF----EHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIA  605 (694)
T ss_pred             CeEEccCCeehhh-hHHHHHhcCCC--CCCH----HHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHH
Confidence            9999999998875 99999986421  1112    22334444433           34344455678999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         490 IALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       490 ~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      |||+++|++|||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+.. ||++++|++|++++.|+.+++.
T Consensus       606 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~ii~l~~G~i~~~g~~~~l~  679 (694)
T TIGR01846       606 RALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLSTVRA-CDRIIVLEKGQIAESGRHEELL  679 (694)
T ss_pred             HHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChHHHHh-CCEEEEEeCCEEEEeCCHHHHH
Confidence            99999999999999999999999999999999874 57999999999998865 9999999999999999988763

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=100.00  E-value=3.7e-40  Score=367.50  Aligned_cols=213  Identities=23%  Similarity=0.412  Sum_probs=180.4

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCc
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSY  420 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~  420 (566)
                      .++++|++++|+.. .++.+|+|+||+|++||.++|+|+||||||||+|+|+|+++|++|+|.++|.++.. ....+++.
T Consensus       337 ~i~~~~v~f~y~~~-~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~  415 (576)
T TIGR02204       337 EIEFEQVNFAYPAR-PDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRAR  415 (576)
T ss_pred             eEEEEEEEEECCCC-CCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHh
Confidence            58999999999632 12579999999999999999999999999999999999999999999999998865 45567788


Q ss_pred             eEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCC-----------CccccCcCcCChhHHHHHHHH
Q psy7366         421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALG-----------HYSDREVRTLSGGNKRKLSTA  489 (566)
Q Consensus       421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGqkqrv~la  489 (566)
                      ++|+||++.+|++ |++||+.++..  ..+    .+.+.++++..++.           .........||||||||++||
T Consensus       416 i~~~~Q~~~lf~~-Ti~~Ni~~~~~--~~~----~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~la  488 (576)
T TIGR02204       416 MALVPQDPVLFAA-SVMENIRYGRP--DAT----DEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIA  488 (576)
T ss_pred             ceEEccCCccccc-cHHHHHhcCCC--CCC----HHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHH
Confidence            9999999998876 99999986421  111    23344555555542           222344567999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         490 IALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       490 ~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      ||++.+|++|||||||++||+.+.+.+++.|+++. +++|+|++||+++.+. .||++++|++|++++.|+++++
T Consensus       489 Ral~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~~~~~-~~d~vi~l~~g~~~~~g~~~~l  561 (576)
T TIGR02204       489 RAILKDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRLATVL-KADRIVVMDQGRIVAQGTHAEL  561 (576)
T ss_pred             HHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecchHHHH-hCCEEEEEECCEEEeeecHHHH
Confidence            99999999999999999999999999999999874 4799999999998875 5999999999999999998765

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=100.00  E-value=4.5e-40  Score=328.15  Aligned_cols=203  Identities=22%  Similarity=0.347  Sum_probs=171.3

Q ss_pred             eeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEE-----------EcCccCCCch
Q psy7366         346 KRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY-----------VMNHSIRDSM  414 (566)
Q Consensus       346 ~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~-----------~~g~~~~~~~  414 (566)
                      .|++++|+.   .+.+|+|+|+ +++||+++|+||||||||||+|+|+|+++|++|+|+           ++|.++....
T Consensus         4 ~~~~~~y~~---~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~   79 (255)
T cd03236           4 DEPVHRYGP---NSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYF   79 (255)
T ss_pred             cCcceeecC---cchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhh
Confidence            368889962   3358999995 999999999999999999999999999999999996           7787764422


Q ss_pred             HH-h--cCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHH
Q psy7366         415 DL-V--RSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIA  491 (566)
Q Consensus       415 ~~-~--~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~a  491 (566)
                      .. .  ...++|++|+..+++. ++.+++.+..     ........+.++++.+++.+..++++.+||||||||++||||
T Consensus        80 ~~~~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l-----~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~lara  153 (255)
T cd03236          80 TKLLEGDVKVIVKPQYVDLIPK-AVKGKVGELL-----KKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAA  153 (255)
T ss_pred             HHhhhcccceeeecchhccCch-HHHHHHHHHh-----chhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHH
Confidence            22 1  1247999999877774 7778776532     122334567899999999988899999999999999999999


Q ss_pred             HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEec
Q psy7366         492 LLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLG  559 (566)
Q Consensus       492 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g  559 (566)
                      |+.+|+++||||||++||+.++..+.++|++++++++|||++|||++++..+||++++|+ |++.+.|
T Consensus       154 l~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~~~  220 (255)
T cd03236         154 LARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGAYG  220 (255)
T ss_pred             HHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCCCcce
Confidence            999999999999999999999999999999998778999999999999999999999995 5565433

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=100.00  E-value=9e-40  Score=365.20  Aligned_cols=205  Identities=31%  Similarity=0.428  Sum_probs=184.8

Q ss_pred             CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCC---ccEEEEcCccCCCchHHhcCceEEEecCCCCCCCC
Q psy7366         358 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT---SGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRL  434 (566)
Q Consensus       358 ~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~  434 (566)
                      ++++|+|+|++|++||+++|+|||||||||||++|+|..+|.   +|+|.++|.++..  ...++.+||++|++.+++.+
T Consensus        37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~--~~~~~~i~yv~Q~~~~~~~l  114 (617)
T TIGR00955        37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDA--KEMRAISAYVQQDDLFIPTL  114 (617)
T ss_pred             ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCH--HHHhhhceeeccccccCccC
Confidence            577999999999999999999999999999999999999885   7999999998753  34567899999999999999


Q ss_pred             CHHHHHHHHHHhcC---CCchHHHHHHHHHHHHcCCCCccccCcC------cCChhHHHHHHHHHHHcCCCCEEEEeCCC
Q psy7366         435 TPREHLEFYSRVRN---VPSVLLNTIVNESLNKFALGHYSDREVR------TLSGGNKRKLSTAIALLGNPPLIFLDEPT  505 (566)
Q Consensus       435 tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~LSgGqkqrv~la~al~~~p~lllLDEPt  505 (566)
                      ||+||+.|....+.   ....+..++++++++.+++.+..|+.++      .|||||||||+||++|+.+|++|+|||||
T Consensus       115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPt  194 (617)
T TIGR00955       115 TVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPT  194 (617)
T ss_pred             cHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCC
Confidence            99999998776532   2334455678999999999888888876      49999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHH-HHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         506 SGMDPGARRFLWTCIERAVSEGRCVILTSHNME-ECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       506 ~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~-~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      +|||+.+...+++.|++++++|+|||+++|++. ++.++||++++|++|++++.|+++++
T Consensus       195 sgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~  254 (617)
T TIGR00955       195 SGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQA  254 (617)
T ss_pred             cchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHH
Confidence            999999999999999999888999999999995 78889999999999999999998875

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=5.7e-40  Score=311.64  Aligned_cols=180  Identities=26%  Similarity=0.395  Sum_probs=164.8

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCccc---ccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTID---KNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNES   74 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~~---~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~   74 (566)
                      +|||||+|||+.++-|++   .+.+.+....   ..+++||||-|...|||.+||.||+++.....++++.+++++++++
T Consensus        38 sGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~EL  117 (309)
T COG1125          38 SGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADEL  117 (309)
T ss_pred             CcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHH
Confidence            599999999999998877   3444432221   3456899999999999999999999999999999999999999999


Q ss_pred             HHHcCCCc--ccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEecCChh
Q psy7366          75 LNKFALGH--YSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNME  151 (566)
Q Consensus        75 l~~~gl~~--~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiisH~~~  151 (566)
                      ++.+||+.  ..+|++++|||||+|||.+||||+.+|+|||||||+++|||.+|..+.+.++++.++ |+||||+|||++
T Consensus       118 l~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid  197 (309)
T COG1125         118 LDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID  197 (309)
T ss_pred             HHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH
Confidence            99999984  689999999999999999999999999999999999999999999999999999665 999999999999


Q ss_pred             HHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy7366         152 ECEALCTKLTIMVNGQFTCLGSATHLKSK  180 (566)
Q Consensus       152 ~~~~~~d~i~vl~~G~i~~~g~~~~~~~~  180 (566)
                      |+..++|||++|++|+++..++|+++..+
T Consensus       198 EA~kLadri~vm~~G~i~Q~~~P~~il~~  226 (309)
T COG1125         198 EALKLADRIAVMDAGEIVQYDTPDEILAN  226 (309)
T ss_pred             HHHhhhceEEEecCCeEEEeCCHHHHHhC
Confidence            99999999999999999999999998754

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.2e-39  Score=360.55  Aligned_cols=203  Identities=20%  Similarity=0.277  Sum_probs=169.2

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCce
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYI  421 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i  421 (566)
                      +|.++||+++|+    ++.+|+|+||+|.+|+++||+||||||||||||+|+|+++|++|+|.++|..          .+
T Consensus         1 ~i~i~nls~~~g----~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~----------~i   66 (638)
T PRK10636          1 MIVFSSLQIRRG----VRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW----------QL   66 (638)
T ss_pred             CEEEEEEEEEeC----CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC----------EE
Confidence            478999999997    5679999999999999999999999999999999999999999999998843          48


Q ss_pred             EEEecCCCCCCCCCHHHHHHHH-----------------------HHhc----CCCchHHHHHHHHHHHHcCCC-Ccccc
Q psy7366         422 GYCPQFDALNDRLTPREHLEFY-----------------------SRVR----NVPSVLLNTIVNESLNKFALG-HYSDR  473 (566)
Q Consensus       422 ~~v~q~~~l~~~~tv~e~l~~~-----------------------~~~~----~~~~~~~~~~~~~~l~~~~l~-~~~~~  473 (566)
                      +|++|++..+ ..++.+++.-.                       ....    .........++.++++.+|+. ...++
T Consensus        67 ~~~~q~~~~~-~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~  145 (638)
T PRK10636         67 AWVNQETPAL-PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLER  145 (638)
T ss_pred             EEEecCCCCC-CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcC
Confidence            8999864332 24655544210                       0000    001112345678899999997 57899


Q ss_pred             CcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECC
Q psy7366         474 EVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNG  553 (566)
Q Consensus       474 ~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G  553 (566)
                      ++.+|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++   +.|||+||||++++..+||++++|++|
T Consensus       146 ~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~~~l~~~~d~i~~L~~G  222 (638)
T PRK10636        146 PVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDRDFLDPIVDKIIHIEQQ  222 (638)
T ss_pred             chhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCHHHHHHhcCEEEEEeCC
Confidence            99999999999999999999999999999999999999999999988776   579999999999999999999999999


Q ss_pred             EEE-EecCcc
Q psy7366         554 QFT-CLGSAT  562 (566)
Q Consensus       554 ~i~-~~g~~~  562 (566)
                      ++. +.|+.+
T Consensus       223 ~i~~~~g~~~  232 (638)
T PRK10636        223 SLFEYTGNYS  232 (638)
T ss_pred             EEEEecCCHH
Confidence            996 456544

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=100.00  E-value=5.8e-39  Score=355.16  Aligned_cols=204  Identities=25%  Similarity=0.310  Sum_probs=174.9

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCc
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSY  420 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~  420 (566)
                      .++++|++++|+.   +.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. ....++++
T Consensus       322 ~i~~~~v~f~y~~---~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~  398 (547)
T PRK10522        322 TLELRNVTFAYQD---NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKL  398 (547)
T ss_pred             eEEEEEEEEEeCC---CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhh
Confidence            5999999999962   3569999999999999999999999999999999999999999999999999875 45567889


Q ss_pred             eEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccC-----cCcCChhHHHHHHHHHHHcCC
Q psy7366         421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDRE-----VRTLSGGNKRKLSTAIALLGN  495 (566)
Q Consensus       421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGqkqrv~la~al~~~  495 (566)
                      ++|++|++.+|+. |+++|   .       ....++.+.+.++.+++....+..     ..+||||||||++||||++.+
T Consensus       399 i~~v~q~~~lf~~-ti~~n---~-------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~  467 (547)
T PRK10522        399 FSAVFTDFHLFDQ-LLGPE---G-------KPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEE  467 (547)
T ss_pred             eEEEecChhHHHH-hhccc---c-------CchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcC
Confidence            9999999988875 78776   1       012234567888888886543322     358999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecC
Q psy7366         496 PPLIFLDEPTSGMDPGARRFLWTCIERAVS-EGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS  560 (566)
Q Consensus       496 p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~  560 (566)
                      |++|||||||++||+.+.+.+.+.+.+..+ .++|+|++||+++.+. .||++++|++|++++...
T Consensus       468 ~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~e~~~  532 (547)
T PRK10522        468 RDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFI-HADRLLEMRNGQLSELTG  532 (547)
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHH-hCCEEEEEECCEEEEecC
Confidence            999999999999999999999999876543 5899999999997754 699999999999988743

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.3e-39  Score=318.32  Aligned_cols=180  Identities=26%  Similarity=0.361  Sum_probs=165.0

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcc------cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI------DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIV   71 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~------~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~   71 (566)
                      .||||++|+++++-.|++   .++|.....      ...++.|||+||++.|....||++|++|+.+..+.++.++++|+
T Consensus        43 AGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV  122 (339)
T COG1135          43 AGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRV  122 (339)
T ss_pred             CcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHH
Confidence            499999999999998887   344422111      12356899999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEecCCh
Q psy7366          72 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNM  150 (566)
Q Consensus        72 ~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiisH~~  150 (566)
                      .++|+.+||++..++++.+|||||||||+|||||+.+|+|||.|||||+|||++.+.+.++|+++.++ |.||++|||.|
T Consensus       123 ~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm  202 (339)
T COG1135         123 AELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEM  202 (339)
T ss_pred             HHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechH
Confidence            99999999999999999999999999999999999999999999999999999999999999999665 99999999999


Q ss_pred             hHHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy7366         151 EECEALCTKLTIMVNGQFTCLGSATHLKSK  180 (566)
Q Consensus       151 ~~~~~~~d~i~vl~~G~i~~~g~~~~~~~~  180 (566)
                      +.+.++||||+||++|++++.|+..++...
T Consensus       203 ~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~  232 (339)
T COG1135         203 EVVKRICDRVAVLDQGRLVEEGTVSEVFAN  232 (339)
T ss_pred             HHHHHHhhhheEeeCCEEEEeccHHHhhcC
Confidence            999999999999999999999999998754

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=100.00  E-value=9.8e-39  Score=353.56  Aligned_cols=207  Identities=20%  Similarity=0.273  Sum_probs=175.3

Q ss_pred             eEEEeeeEEEeCCcCC-CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcC
Q psy7366         342 VLVVKRLFKIYANSKG-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRS  419 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~-~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~  419 (566)
                      .++++|++++|+...+ .+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. ....+++
T Consensus       337 ~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~  416 (555)
T TIGR01194       337 SIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRD  416 (555)
T ss_pred             eEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHh
Confidence            5899999999973211 2369999999999999999999999999999999999999999999999999875 4456778


Q ss_pred             ceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccC------cCcCChhHHHHHHHHHHHc
Q psy7366         420 YIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDRE------VRTLSGGNKRKLSTAIALL  493 (566)
Q Consensus       420 ~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~------~~~LSgGqkqrv~la~al~  493 (566)
                      .++|++|++.+|++ |+++|..         +...++.+.++++.+++.+..+..      ...||||||||++||||++
T Consensus       417 ~i~~v~q~~~lf~~-ti~~n~~---------~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall  486 (555)
T TIGR01194       417 LFSAIFADFHLFDD-LIGPDEG---------EHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWL  486 (555)
T ss_pred             hCcEEccChhhhhh-hhhcccc---------cchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHH
Confidence            89999999988875 8888741         112344577889999987654332      3679999999999999999


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEec
Q psy7366         494 GNPPLIFLDEPTSGMDPGARRFLWTCIE-RAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLG  559 (566)
Q Consensus       494 ~~p~lllLDEPt~gLD~~~~~~l~~~l~-~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g  559 (566)
                      .+|++|||||||++||+.+.+.+++.+. .+...|+|+|++||+++.+ ..||+|++|++|++++.-
T Consensus       487 ~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~-~~~d~i~~l~~G~i~~~~  552 (555)
T TIGR01194       487 EDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYF-ELADQIIKLAAGCIVKDT  552 (555)
T ss_pred             cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHH-HhCCEEEEEECCEEEEec
Confidence            9999999999999999999999988654 4555689999999999876 479999999999998753

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=5.1e-39  Score=298.10  Aligned_cols=219  Identities=24%  Similarity=0.372  Sum_probs=184.9

Q ss_pred             EEEeeeEEEeCCc-CCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCch-HHhcCc
Q psy7366         343 LVVKRLFKIYANS-KGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM-DLVRSY  420 (566)
Q Consensus       343 l~~~~l~~~y~~~-~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~-~~~~~~  420 (566)
                      +.+.|+.+.|.+. ...+++|+++|++|+.|+++.|+|.||||||||+++|+|-++|++|+|.++|.++++.+ ......
T Consensus         2 i~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~   81 (263)
T COG1101           2 ISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANL   81 (263)
T ss_pred             cccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhH
Confidence            4566777766432 23467999999999999999999999999999999999999999999999999998743 334467


Q ss_pred             eEEEecCC--CCCCCCCHHHHHHHHHHh---cCCCc---hHHHHHHHHHHHHcCC--CCccccCcCcCChhHHHHHHHHH
Q psy7366         421 IGYCPQFD--ALNDRLTPREHLEFYSRV---RNVPS---VLLNTIVNESLNKFAL--GHYSDREVRTLSGGNKRKLSTAI  490 (566)
Q Consensus       421 i~~v~q~~--~l~~~~tv~e~l~~~~~~---~~~~~---~~~~~~~~~~l~~~~l--~~~~~~~~~~LSgGqkqrv~la~  490 (566)
                      ++-|||+|  ..++.+|+.||+.+....   +++..   ....+...+.+..+++  ++.++.++.-|||||||-+++++
T Consensus        82 larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~M  161 (263)
T COG1101          82 LARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLM  161 (263)
T ss_pred             HHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHH
Confidence            88999998  479999999999876432   12221   1223445566666654  67889999999999999999999


Q ss_pred             HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCc
Q psy7366         491 ALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSA  561 (566)
Q Consensus       491 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~  561 (566)
                      |.++.|+||+|||-|++|||.....++++-.++.++ +.|.+||||+++.+..|.+|.++|++|+|+.+-+-
T Consensus       162 Atl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv~g  233 (263)
T COG1101         162 ATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVTG  233 (263)
T ss_pred             HhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEccc
Confidence            999999999999999999999999999999998766 78999999999999999999999999999987543

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=5.9e-39  Score=289.88  Aligned_cols=224  Identities=25%  Similarity=0.358  Sum_probs=194.1

Q ss_pred             eEEEeeeEEEeCCcC-----CCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc-hH
Q psy7366         342 VLVVKRLFKIYANSK-----GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS-MD  415 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~-----~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~  415 (566)
                      .++|+|++|.|....     ....+++.|||++++|+.+|++|.||||||||.|+|+|.++|++|+|.++|+++... ..
T Consensus         4 LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~   83 (267)
T COG4167           4 LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYS   83 (267)
T ss_pred             hhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchH
Confidence            478899998875311     123588999999999999999999999999999999999999999999999998543 23


Q ss_pred             HhcCceEEEecCCC--CCCCCCHHHHHHHHHHhc-CCCchHHHHHHHHHHHHcCC-CCccccCcCcCChhHHHHHHHHHH
Q psy7366         416 LVRSYIGYCPQFDA--LNDRLTPREHLEFYSRVR-NVPSVLLNTIVNESLNKFAL-GHYSDREVRTLSGGNKRKLSTAIA  491 (566)
Q Consensus       416 ~~~~~i~~v~q~~~--l~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~LSgGqkqrv~la~a  491 (566)
                      ...++|-++||||+  +.|.+.+...+..+.++. .+......+++.+-|..+|| .+..+-+|..||-||||||++|||
T Consensus        84 ~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARA  163 (267)
T COG4167          84 FRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARA  163 (267)
T ss_pred             hhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHH
Confidence            33467999999985  677788887777776553 33444455678888999998 467899999999999999999999


Q ss_pred             HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         492 LLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       492 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      |+.+|+|+|.||..++||...+.++.+++-+++++ |.+.|.|+.++-.+..++|.|+||++|++++.|++.++.
T Consensus       164 LIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~  238 (267)
T COG4167         164 LILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVL  238 (267)
T ss_pred             HhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhhh
Confidence            99999999999999999999999999999999876 999999999999999999999999999999999988763

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.6e-38  Score=295.01  Aligned_cols=217  Identities=24%  Similarity=0.315  Sum_probs=192.5

Q ss_pred             eEEEeeeEEEeCCcCCC-cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCC--CCCccEEEEcCccCCC--chHH
Q psy7366         342 VLVVKRLFKIYANSKGT-KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI--KPTSGNAYVMNHSIRD--SMDL  416 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~-~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~--~~~~G~i~~~g~~~~~--~~~~  416 (566)
                      +|+++||+....    + +.+|+++||+|++||+.+|+||||||||||.++|+|.-  ++++|+|.++|+++..  ...+
T Consensus         3 ~L~I~dLhv~v~----~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ER   78 (251)
T COG0396           3 MLEIKDLHVEVE----GKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDER   78 (251)
T ss_pred             eeEEeeeEEEec----CchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHH
Confidence            689999999886    4 58999999999999999999999999999999999985  6789999999999976  3456


Q ss_pred             hcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCC---chHHHHHHHHHHHHcCCCC-ccccCcC-cCChhHHHHHHHHHH
Q psy7366         417 VRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVP---SVLLNTIVNESLNKFALGH-YSDREVR-TLSGGNKRKLSTAIA  491 (566)
Q Consensus       417 ~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~---~~~~~~~~~~~l~~~~l~~-~~~~~~~-~LSgGqkqrv~la~a  491 (566)
                      .|..|...+|.|.-++..++.+.+..........   ..+....+.+.++.+++++ +++|.+. .+|||||+|..|+.+
T Consensus        79 Ar~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~  158 (251)
T COG0396          79 ARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQL  158 (251)
T ss_pred             HhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHH
Confidence            7889999999999999999999987765432111   2345667889999999986 7889886 599999999999999


Q ss_pred             HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhC-CEEEEEECCEEEEecCcc
Q psy7366         492 LLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALC-TKLTIMVNGQFTCLGSAT  562 (566)
Q Consensus       492 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~-drv~~l~~G~i~~~g~~~  562 (566)
                      ++.+|++.|||||-||||..+-+.+.+.++.++++|.++++|||....+..+- |++.+|.+|+|+.+|.++
T Consensus       159 ~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~e  230 (251)
T COG0396         159 LLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDPE  230 (251)
T ss_pred             HhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCHH
Confidence            99999999999999999999999999999999999999999999987776553 999999999999999983

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=100.00  E-value=1.7e-38  Score=290.09  Aligned_cols=144  Identities=35%  Similarity=0.535  Sum_probs=135.4

Q ss_pred             EEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceE
Q psy7366         343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIG  422 (566)
Q Consensus       343 l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~  422 (566)
                      ++++|+++.|+    +.++++++||++++||+++|+||||||||||+++|+|+++|++|+|+++|.          ..++
T Consensus         1 l~~~~l~~~~~----~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~----------~~i~   66 (144)
T cd03221           1 IELENLSKTYG----GKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST----------VKIG   66 (144)
T ss_pred             CEEEEEEEEEC----CceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe----------EEEE
Confidence            46889999996    346999999999999999999999999999999999999999999999984          3699


Q ss_pred             EEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEe
Q psy7366         423 YCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLD  502 (566)
Q Consensus       423 ~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLD  502 (566)
                      |+||                                                   ||+||+||++|||||+.+|+++|||
T Consensus        67 ~~~~---------------------------------------------------lS~G~~~rv~laral~~~p~illlD   95 (144)
T cd03221          67 YFEQ---------------------------------------------------LSGGEKMRLALAKLLLENPNLLLLD   95 (144)
T ss_pred             EEcc---------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            9998                                                   9999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCE
Q psy7366         503 EPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ  554 (566)
Q Consensus       503 EPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~  554 (566)
                      |||+|||+.++..+.+.|+++   +.|||++||+++++..+||++++|++|+
T Consensus        96 EP~~~LD~~~~~~l~~~l~~~---~~til~~th~~~~~~~~~d~v~~l~~g~  144 (144)
T cd03221          96 EPTNHLDLESIEALEEALKEY---PGTVILVSHDRYFLDQVATKIIELEDGK  144 (144)
T ss_pred             CCccCCCHHHHHHHHHHHHHc---CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence            999999999999999999877   5799999999999999999999999985

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=100.00  E-value=8.4e-39  Score=352.94  Aligned_cols=198  Identities=28%  Similarity=0.473  Sum_probs=168.8

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCc
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSY  420 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~  420 (566)
                      .++++|++++|+..  .+++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.++.. ....++++
T Consensus       320 ~i~~~~v~f~y~~~--~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~  397 (529)
T TIGR02857       320 SLEFSGLSVAYPGR--RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQ  397 (529)
T ss_pred             eEEEEEEEEECCCC--CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhh
Confidence            59999999999731  2479999999999999999999999999999999999999999999999999875 45667889


Q ss_pred             eEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCc-----------cccCcCcCChhHHHHHHHH
Q psy7366         421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHY-----------SDREVRTLSGGNKRKLSTA  489 (566)
Q Consensus       421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGqkqrv~la  489 (566)
                      ++||+|++.+|+. |++||+.++..  ..+    ++.+.++++..++.+.           ......+||||||||++||
T Consensus       398 i~~v~Q~~~lf~~-ti~~Ni~~~~~--~~~----~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~la  470 (529)
T TIGR02857       398 IAWVPQHPFLFAG-TIAENIRLARP--DAS----DAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALA  470 (529)
T ss_pred             eEEEcCCCcccCc-CHHHHHhccCC--CCC----HHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHH
Confidence            9999999999875 99999987521  111    2345566666655332           2334568999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEE
Q psy7366         490 IALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIM  550 (566)
Q Consensus       490 ~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l  550 (566)
                      |||+++|++|||||||++||+.+.+.+++.|.++. .++|+|++||+++.+. .||++++|
T Consensus       471 Ral~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~i~~l  529 (529)
T TIGR02857       471 RAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLALAE-RADRIVVL  529 (529)
T ss_pred             HHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHH-hCCEEEeC
Confidence            99999999999999999999999999999998874 5899999999998875 59999875

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=100.00  E-value=7.2e-39  Score=383.98  Aligned_cols=209  Identities=22%  Similarity=0.396  Sum_probs=174.3

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEE-cCccCCC-chHHhcC
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV-MNHSIRD-SMDLVRS  419 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~-~g~~~~~-~~~~~~~  419 (566)
                      .|+++|+++.|+... ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+ +|.++.. ....+|+
T Consensus       382 ~I~~~nVsf~Y~~~~-~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~  460 (1466)
T PTZ00265        382 KIQFKNVRFHYDTRK-DVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRS  460 (1466)
T ss_pred             cEEEEEEEEEcCCCC-CCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHH
Confidence            589999999997321 246999999999999999999999999999999999999999999999 4677754 3456788


Q ss_pred             ceEEEecCCCCCCCCCHHHHHHHHHHh-cC---------C----------------------------------------
Q psy7366         420 YIGYCPQFDALNDRLTPREHLEFYSRV-RN---------V----------------------------------------  449 (566)
Q Consensus       420 ~i~~v~q~~~l~~~~tv~e~l~~~~~~-~~---------~----------------------------------------  449 (566)
                      +||||+|++.+|+. |++||+.++... ..         .                                        
T Consensus       461 ~Ig~V~Q~~~LF~~-TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  539 (1466)
T PTZ00265        461 KIGVVSQDPLLFSN-SIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRK  539 (1466)
T ss_pred             hccEecccccchhc-cHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhccc
Confidence            89999999999875 999999885310 00         0                                        


Q ss_pred             -CchHHHHHHHHHHHHcCCCCc-----------cccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHH
Q psy7366         450 -PSVLLNTIVNESLNKFALGHY-----------SDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW  517 (566)
Q Consensus       450 -~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~  517 (566)
                       ......+.+.++++.+++.++           ....+.+||||||||++|||||+.+|+||||||||++||+.+...+.
T Consensus       540 ~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~  619 (1466)
T PTZ00265        540 NYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQ  619 (1466)
T ss_pred             ccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHH
Confidence             000112346667777766432           34667899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHh-CCcEEEEEccCHHHHHhhCCEEEEEECC
Q psy7366         518 TCIERAVS-EGRCVILTSHNMEECEALCTKLTIMVNG  553 (566)
Q Consensus       518 ~~l~~~~~-~g~tvl~vsHd~~~~~~~~drv~~l~~G  553 (566)
                      +.|+++.+ +|+|+|+|||+++.+ +.||+|++|++|
T Consensus       620 ~~L~~~~~~~g~TvIiIsHrls~i-~~aD~Iivl~~g  655 (1466)
T PTZ00265        620 KTINNLKGNENRITIIIAHRLSTI-RYANTIFVLSNR  655 (1466)
T ss_pred             HHHHHHhhcCCCEEEEEeCCHHHH-HhCCEEEEEeCC
Confidence            99999875 589999999999988 579999999986

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=100.00  E-value=4.7e-39  Score=295.46  Aligned_cols=180  Identities=33%  Similarity=0.510  Sum_probs=166.9

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCccc--ccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTID--KNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL   75 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~~--~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l   75 (566)
                      .||||++|+|.++++|++   .+++-+...+  ..+++||+++.+..+|..||++|||.|+++.+++...+++++++++.
T Consensus        39 AGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~  118 (245)
T COG4555          39 AGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELS  118 (245)
T ss_pred             CCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence            499999999999999998   2444433322  34578999998899999999999999999999999999999999999


Q ss_pred             HHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHHh
Q psy7366          76 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEA  155 (566)
Q Consensus        76 ~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~  155 (566)
                      +.++|.+.+|+.+.++|.||||||+|||||+++|+++||||||||||..++..+.+++++++.+|++|||+||.++|++.
T Consensus       119 k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~Evea  198 (245)
T COG4555         119 KRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEA  198 (245)
T ss_pred             HHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCEEEEEeCCEEEEecChhHHHhh
Q psy7366         156 LCTKLTIMVNGQFTCLGSATHLKSK  180 (566)
Q Consensus       156 ~~d~i~vl~~G~i~~~g~~~~~~~~  180 (566)
                      +||||+++++|++++.|+.+.+...
T Consensus       199 lCDrvivlh~Gevv~~gs~~~l~~r  223 (245)
T COG4555         199 LCDRVIVLHKGEVVLEGSIEALDAR  223 (245)
T ss_pred             hhheEEEEecCcEEEcCCHHHHHHH
Confidence            9999999999999999999987654

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=100.00  E-value=4.5e-38  Score=352.87  Aligned_cols=203  Identities=23%  Similarity=0.335  Sum_probs=167.2

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCce
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYI  421 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i  421 (566)
                      +|+++|++++|+    ++.+|+|+||+|++|+++||+||||||||||||+|+|+++|++|+|.++|..          .+
T Consensus         3 ~l~i~~ls~~~~----~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~----------~~   68 (635)
T PRK11147          3 LISIHGAWLSFS----DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDL----------IV   68 (635)
T ss_pred             EEEEeeEEEEeC----CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCC----------EE
Confidence            589999999996    4679999999999999999999999999999999999999999999998732          36


Q ss_pred             EEEecCCCCCCCCCHHHHHH------------------------------HHHHh----cCCCchHHHHHHHHHHHHcCC
Q psy7366         422 GYCPQFDALNDRLTPREHLE------------------------------FYSRV----RNVPSVLLNTIVNESLNKFAL  467 (566)
Q Consensus       422 ~~v~q~~~l~~~~tv~e~l~------------------------------~~~~~----~~~~~~~~~~~~~~~l~~~~l  467 (566)
                      +|++|.+......++.+++.                              .+...    ..........++.++++.+|+
T Consensus        69 ~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl  148 (635)
T PRK11147         69 ARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGL  148 (635)
T ss_pred             EEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCC
Confidence            77777653323345555431                              11000    000111234567889999999


Q ss_pred             CCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEE
Q psy7366         468 GHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKL  547 (566)
Q Consensus       468 ~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv  547 (566)
                      .  .++++.+|||||||||+|||||+.+|+||||||||+|||+.++..+.++|+++   +.|||+||||++++..+||++
T Consensus       149 ~--~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~---~~tvlivsHd~~~l~~~~d~i  223 (635)
T PRK11147        149 D--PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF---QGSIIFISHDRSFIRNMATRI  223 (635)
T ss_pred             C--CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC---CCEEEEEeCCHHHHHHhcCeE
Confidence            6  38899999999999999999999999999999999999999999999999887   369999999999999999999


Q ss_pred             EEEECCEEEE-ecCccc
Q psy7366         548 TIMVNGQFTC-LGSATH  563 (566)
Q Consensus       548 ~~l~~G~i~~-~g~~~~  563 (566)
                      ++|++|+++. .|+.++
T Consensus       224 ~~L~~G~i~~~~g~~~~  240 (635)
T PRK11147        224 VDLDRGKLVSYPGNYDQ  240 (635)
T ss_pred             EEEECCEEEEecCCHHH
Confidence            9999999974 566543

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=100.00  E-value=2.6e-38  Score=297.34  Aligned_cols=153  Identities=27%  Similarity=0.371  Sum_probs=138.3

Q ss_pred             eeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEe
Q psy7366         346 KRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCP  425 (566)
Q Consensus       346 ~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~  425 (566)
                      .|+++.|+    ++.++++ +|+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+           ++|++
T Consensus         4 ~~l~~~~~----~~~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~-----------i~~~~   67 (177)
T cd03222           4 PDCVKRYG----VFFLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT-----------PVYKP   67 (177)
T ss_pred             CCeEEEEC----CEEEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE-----------EEEEc
Confidence            47889996    5678888 49999999999999999999999999999999999999999853           88998


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCC
Q psy7366         426 QFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPT  505 (566)
Q Consensus       426 q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt  505 (566)
                      |++.                                                ||||||||++|||||+.+|+++||||||
T Consensus        68 q~~~------------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPt   99 (177)
T cd03222          68 QYID------------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPS   99 (177)
T ss_pred             ccCC------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence            8642                                                9999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhCC-cEEEEEccCHHHHHhhCCEEEEEECCEEEEe--cCcc
Q psy7366         506 SGMDPGARRFLWTCIERAVSEG-RCVILTSHNMEECEALCTKLTIMVNGQFTCL--GSAT  562 (566)
Q Consensus       506 ~gLD~~~~~~l~~~l~~~~~~g-~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~--g~~~  562 (566)
                      ++||+.+++.+.+.|.++++++ .|||++|||++++..+||++++|+++..+.+  |.|.
T Consensus       100 s~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~~~  159 (177)
T cd03222         100 AYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPK  159 (177)
T ss_pred             ccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCccceeccCCc
Confidence            9999999999999999987764 9999999999999999999999998765543  5544

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=100.00  E-value=1.6e-38  Score=350.68  Aligned_cols=185  Identities=29%  Similarity=0.460  Sum_probs=157.9

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCce
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYI  421 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i  421 (566)
                      .++++|++++|+.   ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++......+|++|
T Consensus       334 ~I~~~~vsf~Y~~---~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i  410 (529)
T TIGR02868       334 TLELRDLSFGYPG---SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRI  410 (529)
T ss_pred             eEEEEEEEEecCC---CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhhe
Confidence            5999999999973   3469999999999999999999999999999999999999999999999999865555678899


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCc-------ccc----CcCcCChhHHHHHHHHH
Q psy7366         422 GYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHY-------SDR----EVRTLSGGNKRKLSTAI  490 (566)
Q Consensus       422 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~----~~~~LSgGqkqrv~la~  490 (566)
                      +||||++.+|++ |++||+.++..  ..    .++.+.++++..++.++       .+.    ....||||||||++|||
T Consensus       411 ~~V~Q~~~lF~~-TI~eNI~~g~~--~~----~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiAR  483 (529)
T TIGR02868       411 SVFAQDAHLFDT-TVRDNLRLGRP--DA----TDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALAR  483 (529)
T ss_pred             EEEccCcccccc-cHHHHHhccCC--CC----CHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHH
Confidence            999999999987 99999987521  11    12345666776665432       233    34579999999999999


Q ss_pred             HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCH
Q psy7366         491 ALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM  537 (566)
Q Consensus       491 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~  537 (566)
                      ||+++|++||||||||+||+.+.+.+.+.|.++ .+++|+|+|||++
T Consensus       484 all~~~~iliLDE~TSaLD~~te~~I~~~l~~~-~~~~TvIiItHrl  529 (529)
T TIGR02868       484 ALLADAPILLLDEPTEHLDAGTESELLEDLLAA-LSGKTVVVITHHL  529 (529)
T ss_pred             HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-cCCCEEEEEecCC
Confidence            999999999999999999999999999999875 3479999999974

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=100.00  E-value=1.4e-37  Score=335.58  Aligned_cols=199  Identities=30%  Similarity=0.444  Sum_probs=172.5

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCce
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYI  421 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i  421 (566)
                      +|.++|+++.|+    ++++|+++||+|.+|+++||+|+||||||||||+|+|...|++|+|...+.-          ++
T Consensus         3 ~i~~~~ls~~~g----~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~----------~v   68 (530)
T COG0488           3 MITLENLSLAYG----DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGL----------RV   68 (530)
T ss_pred             eEEEeeeEEeeC----CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCc----------eE
Confidence            689999999996    6889999999999999999999999999999999999999999999887632          59


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHHh-cC-----------------------------CCchHHHHHHHHHHHHcCCCCcc
Q psy7366         422 GYCPQFDALNDRLTPREHLEFYSRV-RN-----------------------------VPSVLLNTIVNESLNKFALGHYS  471 (566)
Q Consensus       422 ~~v~q~~~l~~~~tv~e~l~~~~~~-~~-----------------------------~~~~~~~~~~~~~l~~~~l~~~~  471 (566)
                      +|++|++.+.+..||.+.+...... ..                             ......+.++..++..+|+... 
T Consensus        69 ~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-  147 (530)
T COG0488          69 GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-  147 (530)
T ss_pred             EEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-
Confidence            9999999999889999987543210 00                             0011123567778888888876 


Q ss_pred             ccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEE
Q psy7366         472 DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMV  551 (566)
Q Consensus       472 ~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~  551 (566)
                      ++++++||||||.||+||+||+.+|++||||||||+||..+..-+.+.|.++  .| |||+||||.+++..+|++|+.++
T Consensus       148 ~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHDR~FLd~V~t~I~~ld  224 (530)
T COG0488         148 DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHDRYFLDNVATHILELD  224 (530)
T ss_pred             cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCCHHHHHHHhhheEEec
Confidence            9999999999999999999999999999999999999999999998888755  35 99999999999999999999999


Q ss_pred             CCEEEEe
Q psy7366         552 NGQFTCL  558 (566)
Q Consensus       552 ~G~i~~~  558 (566)
                      .|++...
T Consensus       225 ~g~l~~y  231 (530)
T COG0488         225 RGKLTPY  231 (530)
T ss_pred             CCceeEe
Confidence            9987554

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=100.00  E-value=8.6e-38  Score=321.72  Aligned_cols=217  Identities=29%  Similarity=0.435  Sum_probs=181.8

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc-hHHhcC
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS-MDLVRS  419 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~  419 (566)
                      ..+.+++++..-+.  ..+++++++||++.+||.+||+||+|||||||.|+|.|..+|.+|.|.+||-++..+ .+.+-+
T Consensus       333 g~L~Ve~l~~~PPg--~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~  410 (580)
T COG4618         333 GALSVERLTAAPPG--QKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGR  410 (580)
T ss_pred             ceeeEeeeeecCCC--CCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhcc
Confidence            46899999886553  357899999999999999999999999999999999999999999999999999774 556788


Q ss_pred             ceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHH-----HHHHHHHHHcCCCCccccC----cCcCChhHHHHHHHHH
Q psy7366         420 YIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLN-----TIVNESLNKFALGHYSDRE----VRTLSGGNKRKLSTAI  490 (566)
Q Consensus       420 ~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~----~~~LSgGqkqrv~la~  490 (566)
                      +|||+||+..+|++ ||.|||.-+..  ..+.+..-     ..+.+++-++  .+-.+..    -..||||||||++|||
T Consensus       411 hiGYLPQdVeLF~G-TIaeNIaRf~~--~~d~~kIieAA~lAgvHelIl~l--P~GYdT~iG~~G~~LSgGQRQRIaLAR  485 (580)
T COG4618         411 HIGYLPQDVELFDG-TIAENIARFGE--EADPEKVIEAARLAGVHELILRL--PQGYDTRIGEGGATLSGGQRQRIALAR  485 (580)
T ss_pred             ccCcCcccceecCC-cHHHHHHhccc--cCCHHHHHHHHHHcChHHHHHhC--cCCccCccCCCCCCCCchHHHHHHHHH
Confidence            99999999999998 99999974421  11111111     1133444333  2333444    4589999999999999


Q ss_pred             HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         491 ALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       491 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      ||..+|.+++||||-++||......+.+.|...+++|.|+|+|||....+. .+|+|++|++|++..+|+.+++.
T Consensus       486 AlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~-~~Dkilvl~~G~~~~FG~r~eVL  559 (580)
T COG4618         486 ALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALA-SVDKILVLQDGRIAAFGPREEVL  559 (580)
T ss_pred             HHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHh-hcceeeeecCChHHhcCCHHHHH
Confidence            999999999999999999999999999999999999999999999987765 69999999999999999988763

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=5e-38  Score=306.92  Aligned_cols=180  Identities=25%  Similarity=0.346  Sum_probs=162.5

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCc----ccccccceeEEcCCCC-CCCCCCHHHHHHHHHHhcCCChhhHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPT----IDKNLSYIGYCPQFDA-LNDRLTPREHLEFYSRVRNVPSVLLNTIVN   72 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~----~~~~~~~ig~v~Q~~~-l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~   72 (566)
                      +||||++|+++|++.|..   .+.+....    .....++||||+|+|. .+...||.|+++|+.++.+++.+++++++.
T Consensus        41 sGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~  120 (235)
T COG1122          41 SGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVA  120 (235)
T ss_pred             CCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHH
Confidence            599999999999999876   23333211    1234567999999995 446789999999999999999999999999


Q ss_pred             HHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEecCChh
Q psy7366          73 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNME  151 (566)
Q Consensus        73 ~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiisH~~~  151 (566)
                      ++++.+|+.+.+++.+.+|||||||||+||.+|+.+|++||||||||+|||.+++++.+++++++++ |+|||++|||++
T Consensus       121 ~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~  200 (235)
T COG1122         121 EALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE  200 (235)
T ss_pred             HHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999887 689999999999


Q ss_pred             HHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy7366         152 ECEALCTKLTIMVNGQFTCLGSATHLKSK  180 (566)
Q Consensus       152 ~~~~~~d~i~vl~~G~i~~~g~~~~~~~~  180 (566)
                      ++..+|||+++|++|+++.+|++.++...
T Consensus       201 ~~~~~ad~v~vl~~G~i~~~g~p~~i~~~  229 (235)
T COG1122         201 LVLEYADRVVVLDDGKILADGDPAEIFND  229 (235)
T ss_pred             HHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence            99999999999999999999999887653

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.9e-37  Score=278.07  Aligned_cols=216  Identities=26%  Similarity=0.439  Sum_probs=179.6

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCcc-----CCC---
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS-----IRD---  412 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~-----~~~---  412 (566)
                      +.+++.+++|.|+    ...-.+||||++.|||++||+|.+||||||||+||++-+.|+.|+|.+.-.+     +..   
T Consensus         5 PLL~V~~lsk~Yg----~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msE   80 (258)
T COG4107           5 PLLSVSGLSKLYG----PGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSE   80 (258)
T ss_pred             cceeehhhhhhhC----CCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhch
Confidence            4689999999997    4456899999999999999999999999999999999999999999986532     211   


Q ss_pred             c--hHHhcCceEEEecCCC--CCCCCCHHHHH----HH-HHHhcCCCchHHHHHHHHHHHHcCCC-CccccCcCcCChhH
Q psy7366         413 S--MDLVRSYIGYCPQFDA--LNDRLTPREHL----EF-YSRVRNVPSVLLNTIVNESLNKFALG-HYSDREVRTLSGGN  482 (566)
Q Consensus       413 ~--~~~~~~~i~~v~q~~~--l~~~~tv~e~l----~~-~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq  482 (566)
                      .  ....|..-|+|.|+|.  +-...|..-|+    .- +.+.++    ..++.+.+||+++.++ ...|..|.++||||
T Consensus        81 aeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG----~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGM  156 (258)
T COG4107          81 AERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYG----NIRAEAQDWLEEVEIDLDRIDDLPRTFSGGM  156 (258)
T ss_pred             HHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhh----hHHHHHHHHHHhcccCcccccCcccccchHH
Confidence            1  1124556899999973  43333333343    21 222222    3456688999999997 45688999999999


Q ss_pred             HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCc
Q psy7366         483 KRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSA  561 (566)
Q Consensus       483 kqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~  561 (566)
                      |||+.|||.|+..|+++++||||.|||...+..+.++++.+..+ |.+++++|||+..+.-++||.++|++|++++.|-.
T Consensus       157 qQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~GLT  236 (258)
T COG4107         157 QQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLT  236 (258)
T ss_pred             HHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEeccccc
Confidence            99999999999999999999999999999999999999999876 99999999999999999999999999999999977


Q ss_pred             ccc
Q psy7366         562 THL  564 (566)
Q Consensus       562 ~~l  564 (566)
                      +.+
T Consensus       237 Drv  239 (258)
T COG4107         237 DRV  239 (258)
T ss_pred             ccc
Confidence            654

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=100.00  E-value=4.1e-37  Score=288.91  Aligned_cols=156  Identities=22%  Similarity=0.313  Sum_probs=135.8

Q ss_pred             CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHH
Q psy7366         358 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPR  437 (566)
Q Consensus       358 ~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~  437 (566)
                      .+++|+|+||+|++|++++|+||||||||||||+|.+    ++|++.+++....    ..+..++|++|           
T Consensus         7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----~~G~v~~~~~~~~----~~~~~~~~~~q-----------   67 (176)
T cd03238           7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----ASGKARLISFLPK----FSRNKLIFIDQ-----------   67 (176)
T ss_pred             eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----cCCcEEECCcccc----cccccEEEEhH-----------
Confidence            4568999999999999999999999999999999963    6999999876311    11335778776           


Q ss_pred             HHHHHHHHhcCCCchHHHHHHHHHHHHcCCCC-ccccCcCcCChhHHHHHHHHHHHcCC--CCEEEEeCCCCCCCHHHHH
Q psy7366         438 EHLEFYSRVRNVPSVLLNTIVNESLNKFALGH-YSDREVRTLSGGNKRKLSTAIALLGN--PPLIFLDEPTSGMDPGARR  514 (566)
Q Consensus       438 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqrv~la~al~~~--p~lllLDEPt~gLD~~~~~  514 (566)
                                           .++++.+++.. ..++++.+||||||||++|||||+.+  |+++||||||++||+.+++
T Consensus        68 ---------------------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~  126 (176)
T cd03238          68 ---------------------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDIN  126 (176)
T ss_pred             ---------------------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHH
Confidence                                 24678888875 47899999999999999999999999  9999999999999999999


Q ss_pred             HHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCE
Q psy7366         515 FLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ  554 (566)
Q Consensus       515 ~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~  554 (566)
                      .+.+.|+++.++|.|||++||+++++ ..||++++|.+|+
T Consensus       127 ~l~~~l~~~~~~g~tvIivSH~~~~~-~~~d~i~~l~~g~  165 (176)
T cd03238         127 QLLEVIKGLIDLGNTVILIEHNLDVL-SSADWIIDFGPGS  165 (176)
T ss_pred             HHHHHHHHHHhCCCEEEEEeCCHHHH-HhCCEEEEECCCC
Confidence            99999999877799999999999997 5799999996654

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=100.00  E-value=2.8e-37  Score=369.94  Aligned_cols=207  Identities=20%  Similarity=0.270  Sum_probs=179.4

Q ss_pred             CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCC----CCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCC
Q psy7366         358 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI----KPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDR  433 (566)
Q Consensus       358 ~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~----~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~  433 (566)
                      .+.+|+|+|+++++||+++|+||||||||||||+|+|..    +|++|+|.++|+++.......++.++|++|++.+++.
T Consensus        73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~  152 (1394)
T TIGR00956        73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPH  152 (1394)
T ss_pred             cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCC
Confidence            467999999999999999999999999999999999986    5789999999988754333456679999999999999


Q ss_pred             CCHHHHHHHHHHhcC-------CCchHHH-HHHHHHHHHcCCCCccccC-----cCcCChhHHHHHHHHHHHcCCCCEEE
Q psy7366         434 LTPREHLEFYSRVRN-------VPSVLLN-TIVNESLNKFALGHYSDRE-----VRTLSGGNKRKLSTAIALLGNPPLIF  500 (566)
Q Consensus       434 ~tv~e~l~~~~~~~~-------~~~~~~~-~~~~~~l~~~~l~~~~~~~-----~~~LSgGqkqrv~la~al~~~p~lll  500 (566)
                      +||+||+.+....+.       ..+.+.. ...+.+++.+||.+..+++     +..|||||||||+||++|+.+|++++
T Consensus       153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vll  232 (1394)
T TIGR00956       153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQC  232 (1394)
T ss_pred             CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEE
Confidence            999999998765431       1222222 2346689999998777655     56799999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCH-HHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         501 LDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNM-EECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       501 LDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~-~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      |||||+|||+.++..+.+.|++++++ |+|||+++|+. +++.+++|++++|++|++++.|+++++
T Consensus       233 lDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~  298 (1394)
T TIGR00956       233 WDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKA  298 (1394)
T ss_pred             EeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHH
Confidence            99999999999999999999999875 99999999996 788999999999999999999998765

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=100.00  E-value=8.6e-37  Score=283.21  Aligned_cols=155  Identities=37%  Similarity=0.664  Sum_probs=143.0

Q ss_pred             EeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCceEE
Q psy7366         345 VKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSYIGY  423 (566)
Q Consensus       345 ~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~i~~  423 (566)
                      ++++++.|.    ++.+++++||+|++|++++|+|+||||||||+++|+|+++|++|+|+++|.++.. .....+..++|
T Consensus         2 ~~~~~~~~~----~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~   77 (157)
T cd00267           2 IENLSFRYG----GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGY   77 (157)
T ss_pred             eEEEEEEeC----CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEE
Confidence            578899986    3479999999999999999999999999999999999999999999999987754 23345677999


Q ss_pred             EecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeC
Q psy7366         424 CPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDE  503 (566)
Q Consensus       424 v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDE  503 (566)
                      ++|                                                   ||+||+||++||++++.+|+++||||
T Consensus        78 ~~q---------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ilDE  106 (157)
T cd00267          78 VPQ---------------------------------------------------LSGGQRQRVALARALLLNPDLLLLDE  106 (157)
T ss_pred             Eee---------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            998                                                   99999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCE
Q psy7366         504 PTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ  554 (566)
Q Consensus       504 Pt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~  554 (566)
                      ||+|||+.++..+.+.|.++.+.+.|+|++||+++++..+||++++|++|+
T Consensus       107 p~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~  157 (157)
T cd00267         107 PTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK  157 (157)
T ss_pred             CCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence            999999999999999999987768999999999999999999999999874

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.9e-37  Score=282.70  Aligned_cols=192  Identities=27%  Similarity=0.411  Sum_probs=170.9

Q ss_pred             EEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceE
Q psy7366         343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIG  422 (566)
Q Consensus       343 l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~  422 (566)
                      ++.+|++..-+    ..++|.++||++.+||++-|.||||||||||||+|+|+.+|++|+|+|+|.++....+...+.+-
T Consensus         3 L~a~~L~~~R~----e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~   78 (209)
T COG4133           3 LEAENLSCERG----ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALL   78 (209)
T ss_pred             chhhhhhhccC----cceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHH
Confidence            56677776654    67899999999999999999999999999999999999999999999999998776555566777


Q ss_pred             EEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEe
Q psy7366         423 YCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLD  502 (566)
Q Consensus       423 ~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLD  502 (566)
                      |+--.+.+-+.+|+.||+.|+..+++.   .....+.++++.+||....|.++.+||-|||+||+|||.++..+++.|||
T Consensus        79 yLGH~~giK~eLTa~ENL~F~~~~~~~---~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLD  155 (209)
T COG4133          79 YLGHQPGIKTELTALENLHFWQRFHGS---GNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILD  155 (209)
T ss_pred             HhhccccccchhhHHHHHHHHHHHhCC---CchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeec
Confidence            887778888999999999999887653   12345788999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHH
Q psy7366         503 EPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECE  541 (566)
Q Consensus       503 EPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~  541 (566)
                      |||++||......+-.++..-..+|..||.+||..--+.
T Consensus       156 EP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~  194 (209)
T COG4133         156 EPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIA  194 (209)
T ss_pred             CcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCC
Confidence            999999999999999999998888999999999865543

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.4e-37  Score=303.21  Aligned_cols=180  Identities=22%  Similarity=0.342  Sum_probs=160.5

Q ss_pred             CCcchHHHHHhccccCCCc---cCCC---CCcc-cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcC--CChhhHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQK---VPGS---NPTI-DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRN--VPSVLLNTIV   71 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~---~~~~---~~~~-~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~--~~~~~~~~~~   71 (566)
                      .||||++|+|.|+.-|+..   ..+.   +... ....++||+|+|+..+|+.|||++|++|+.....  .+..+++.++
T Consensus        39 aGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv  118 (345)
T COG1118          39 AGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARV  118 (345)
T ss_pred             CcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHH
Confidence            5999999999999998872   2222   1111 2334679999999999999999999999986652  4456788999


Q ss_pred             HHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEecCCh
Q psy7366          72 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNM  150 (566)
Q Consensus        72 ~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiisH~~  150 (566)
                      .++|+.++|+...++++.+|||||||||+|||||+..|+|||||||+++||..-+.+|..+|+++.+. |.|+++||||.
T Consensus       119 ~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~  198 (345)
T COG1118         119 EELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQ  198 (345)
T ss_pred             HHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999766 99999999999


Q ss_pred             hHHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy7366         151 EECEALCTKLTIMVNGQFTCLGSATHLKSK  180 (566)
Q Consensus       151 ~~~~~~~d~i~vl~~G~i~~~g~~~~~~~~  180 (566)
                      +|+.++||||++|++|+|...|+++++...
T Consensus       199 eea~~ladrvvvl~~G~Ieqvg~p~ev~~~  228 (345)
T COG1118         199 EEALELADRVVVLNQGRIEQVGPPDEVYDH  228 (345)
T ss_pred             HHHHhhcceEEEecCCeeeeeCCHHHHhcC
Confidence            999999999999999999999999998654

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=4e-37  Score=312.69  Aligned_cols=180  Identities=39%  Similarity=0.617  Sum_probs=161.8

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcc--cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI--DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL   75 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~--~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l   75 (566)
                      .||||++|+++|++.|++   .+.+.++..  ...+++|||+||+|.+++.+||+|++.|.+..++.+.....+++++++
T Consensus        42 AGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l  121 (293)
T COG1131          42 AGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELL  121 (293)
T ss_pred             CCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence            599999999999999876   344443332  233567999999999999999999999999998876555677999999


Q ss_pred             HHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEecCChhHHH
Q psy7366          76 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEG-RCVILTSHNMEECE  154 (566)
Q Consensus        76 ~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g-~tviiisH~~~~~~  154 (566)
                      +.+||+...++++++||+|||||++||+||+++|++|||||||+||||.++.+++++|++++++| +|||++||.+++++
T Consensus       122 ~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~  201 (293)
T COG1131         122 ELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAE  201 (293)
T ss_pred             HHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHH
Confidence            99999987789999999999999999999999999999999999999999999999999999887 79999999999999


Q ss_pred             hhcCEEEEEeCCEEEEecChhHHHhh
Q psy7366         155 ALCTKLTIMVNGQFTCLGSATHLKSK  180 (566)
Q Consensus       155 ~~~d~i~vl~~G~i~~~g~~~~~~~~  180 (566)
                      .+||||++|++|++++.|+++++...
T Consensus       202 ~~~d~v~il~~G~~~~~g~~~~l~~~  227 (293)
T COG1131         202 ELCDRVIILNDGKIIAEGTPEELKEK  227 (293)
T ss_pred             HhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence            99999999999999999999887654

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=2.5e-37  Score=292.44  Aligned_cols=180  Identities=26%  Similarity=0.367  Sum_probs=162.4

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCccc------ccccceeEEcCCCCCCCCCCHHHHHHHHHHh-cCCChhhHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTID------KNLSYIGYCPQFDALNDRLTPREHLEFYSRV-RNVPSVLLNTI   70 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~~------~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~-~~~~~~~~~~~   70 (566)
                      +||||++|+|.|++.|++   .+.+.+....      ...+++|++||.-.||..+||+||++|.... ..+++..+++.
T Consensus        45 sGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~l  124 (263)
T COG1127          45 SGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIREL  124 (263)
T ss_pred             cCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHH
Confidence            599999999999999887   3444432111      2245799999999999999999999998655 46899999999


Q ss_pred             HHHHHHHcCCCcc-cccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEecC
Q psy7366          71 VNESLNKFALGHY-SDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSH  148 (566)
Q Consensus        71 ~~~~l~~~gl~~~-~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiisH  148 (566)
                      +..-|+.+||... .++++++|||||++|++||||++.+|++|++||||+||||.+...+-++|+++++. |.|+++|||
T Consensus       125 v~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTH  204 (263)
T COG1127         125 VLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTH  204 (263)
T ss_pred             HHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEC
Confidence            9999999999986 89999999999999999999999999999999999999999999999999999876 999999999


Q ss_pred             ChhHHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy7366         149 NMEECEALCTKLTIMVNGQFTCLGSATHLKSK  180 (566)
Q Consensus       149 ~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~~  180 (566)
                      |++++..+||||++|.+|+|++.|+++++.+.
T Consensus       205 Dl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~s  236 (263)
T COG1127         205 DLDSLLTIADRVAVLADGKVIAEGTPEELLAS  236 (263)
T ss_pred             ChHHHHhhhceEEEEeCCEEEEeCCHHHHHhC
Confidence            99999999999999999999999999998753

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=100.00  E-value=5.9e-37  Score=344.41  Aligned_cols=194  Identities=21%  Similarity=0.292  Sum_probs=164.6

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCc
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSY  420 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~  420 (566)
                      ..++++|+++.|+.   ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++          +++
T Consensus       450 ~~i~~~nv~~~~~~---~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~----------~~~  516 (659)
T TIGR00954       450 NGIKFENIPLVTPN---GDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA----------KGK  516 (659)
T ss_pred             CeEEEEeeEEECCC---CCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC----------CCc
Confidence            46999999999952   35799999999999999999999999999999999999999999998864          347


Q ss_pred             eEEEecCCCCCCCCCHHHHHHHHHHhcCCC-chHHHHHHHHHHHHcCCCCccccCc---------CcCChhHHHHHHHHH
Q psy7366         421 IGYCPQFDALNDRLTPREHLEFYSRVRNVP-SVLLNTIVNESLNKFALGHYSDREV---------RTLSGGNKRKLSTAI  490 (566)
Q Consensus       421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgGqkqrv~la~  490 (566)
                      ++|+||++.+++. |++||+.+........ .....+.+.++++.+++.+..+++.         .+||||||||++|||
T Consensus       517 i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iAR  595 (659)
T TIGR00954       517 LFYVPQRPYMTLG-TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMAR  595 (659)
T ss_pred             EEEECCCCCCCCc-CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHH
Confidence            9999999998887 9999998753211110 1112345678899999976665543         799999999999999


Q ss_pred             HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEEC
Q psy7366         491 ALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVN  552 (566)
Q Consensus       491 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~  552 (566)
                      ||+.+|+++||||||++||+.+++.+.+.+++.   |.|+|++||+++.+ ..||++++|+.
T Consensus       596 al~~~p~illLDEpts~LD~~~~~~l~~~l~~~---~~tvI~isH~~~~~-~~~d~il~l~~  653 (659)
T TIGR00954       596 LFYHKPQFAILDECTSAVSVDVEGYMYRLCREF---GITLFSVSHRKSLW-KYHEYLLYMDG  653 (659)
T ss_pred             HHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEeCchHHH-HhCCEEEEEeC
Confidence            999999999999999999999999999888763   89999999999987 57999999963

>PRK13409 putative ATPase RIL; Provisional

Probab=100.00  E-value=2.9e-37  Score=341.26  Aligned_cols=193  Identities=25%  Similarity=0.348  Sum_probs=164.8

Q ss_pred             eeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEE-----------EcCccCCCchH
Q psy7366         347 RLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY-----------VMNHSIRDSMD  415 (566)
Q Consensus       347 ~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~-----------~~g~~~~~~~~  415 (566)
                      ++++.|+.   +..+|++++ .+++|+++||+||||||||||+|+|+|+++|++|+|.           ++|.++.....
T Consensus        78 ~~~~~yg~---~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~  153 (590)
T PRK13409         78 EPVHRYGV---NGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFK  153 (590)
T ss_pred             CceEEecC---CceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHH
Confidence            47888962   346999999 8999999999999999999999999999999999997           88887743221


Q ss_pred             H---hcCceEEEecCCCCCCC---CCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHH
Q psy7366         416 L---VRSYIGYCPQFDALNDR---LTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTA  489 (566)
Q Consensus       416 ~---~~~~i~~v~q~~~l~~~---~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la  489 (566)
                      .   .+.+++|.+|....++.   .||.|++...         .....+.++++.+++....++++.+|||||||||+||
T Consensus       154 ~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~---------~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia  224 (590)
T PRK13409        154 KLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV---------DERGKLDEVVERLGLENILDRDISELSGGELQRVAIA  224 (590)
T ss_pred             HHhccCcceeecccchhhhhhhhcchHHHHHHhh---------hHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence            1   12346666665433322   3999988631         1235678999999999889999999999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECC
Q psy7366         490 IALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNG  553 (566)
Q Consensus       490 ~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G  553 (566)
                      +||+.+|++|||||||++||+..+..+.+.|+++++ |.|||++|||++++..+||++++|+++
T Consensus       225 ~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~~l~~~~D~v~vl~~~  287 (590)
T PRK13409        225 AALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLAVLDYLADNVHIAYGE  287 (590)
T ss_pred             HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence            999999999999999999999999999999999988 999999999999999999999999873

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.7e-37  Score=313.13  Aligned_cols=180  Identities=26%  Similarity=0.373  Sum_probs=165.4

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcc-cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI-DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLN   76 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~-~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~   76 (566)
                      +||||++|+|.|+.-+++   .+.+..... ....+.|+||||+..|||.|||+||++|+.++.+.++.+++++++++++
T Consensus        40 cGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~  119 (338)
T COG3839          40 CGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAK  119 (338)
T ss_pred             CCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHH
Confidence            699999999999998766   244433222 2335679999999999999999999999999999999999999999999


Q ss_pred             HcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEecCChhHHHh
Q psy7366          77 KFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEA  155 (566)
Q Consensus        77 ~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiisH~~~~~~~  155 (566)
                      .++|++.+++++.+|||||||||+|||||+++|+++|||||+|+||+.-+..+...|+++.++ |.|+|++|||-.|+..
T Consensus       120 ~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmt  199 (338)
T COG3839         120 LLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMT  199 (338)
T ss_pred             HcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999998665 9999999999999999


Q ss_pred             hcCEEEEEeCCEEEEecChhHHHhh
Q psy7366         156 LCTKLTIMVNGQFTCLGSATHLKSK  180 (566)
Q Consensus       156 ~~d~i~vl~~G~i~~~g~~~~~~~~  180 (566)
                      ++|||+||++|+|...|++.++...
T Consensus       200 ladri~Vm~~G~i~Q~g~p~ely~~  224 (338)
T COG3839         200 LADRIVVMNDGRIQQVGTPLELYER  224 (338)
T ss_pred             hCCEEEEEeCCeeeecCChHHHhhC
Confidence            9999999999999999999998764

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=3.6e-37  Score=295.54  Aligned_cols=167  Identities=26%  Similarity=0.331  Sum_probs=151.4

Q ss_pred             CCcchHHHHHhccccCCCc---cCCCCCcccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQK---VPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNK   77 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~---~~~~~~~~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~   77 (566)
                      +||||++|++.|+..|...   +.+...  ......+|||||++.|+|+.||.||+.++.+..+.+..+..+++.++|+.
T Consensus        40 cGKSTLLriiAGL~~p~~G~V~~~g~~v--~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~  117 (248)
T COG1116          40 CGKSTLLRLIAGLEKPTSGEVLLDGRPV--TGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLEL  117 (248)
T ss_pred             CCHHHHHHHHhCCCCCCCceEEECCccc--CCCCCCEEEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHH
Confidence            6999999999999988773   444332  33345799999999999999999999999988888888888899999999


Q ss_pred             cCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEecCChhHHHhh
Q psy7366          78 FALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS-EGRCVILTSHNMEECEAL  156 (566)
Q Consensus        78 ~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviiisH~~~~~~~~  156 (566)
                      +||....++++++|||||||||+|||||+.+|+|||||||+++||..++..+.+.|.++++ .++||++||||++|+..+
T Consensus       118 VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~L  197 (248)
T COG1116         118 VGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYL  197 (248)
T ss_pred             cCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhh
Confidence            9999999999999999999999999999999999999999999999999999999999865 589999999999999999


Q ss_pred             cCEEEEEeC--CEEE
Q psy7366         157 CTKLTIMVN--GQFT  169 (566)
Q Consensus       157 ~d~i~vl~~--G~i~  169 (566)
                      +|||++|.+  |+|.
T Consensus       198 sdRivvl~~~P~~i~  212 (248)
T COG1116         198 ADRVVVLSNRPGRIG  212 (248)
T ss_pred             hCEEEEecCCCccee
Confidence            999999999  4554

>KOG0056|consensus

Probab=100.00  E-value=2.3e-37  Score=315.13  Aligned_cols=217  Identities=24%  Similarity=0.370  Sum_probs=183.0

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcC
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRS  419 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~  419 (566)
                      ..++++|+++.|..   ++++|+||||++.+|+.++|+||+|+||||++|++..+....+|.|.+||++++. ....+|+
T Consensus       536 G~i~fsnvtF~Y~p---~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs  612 (790)
T KOG0056|consen  536 GKIEFSNVTFAYDP---GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRS  612 (790)
T ss_pred             CeEEEEEeEEecCC---CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHH
Confidence            45899999999974   6899999999999999999999999999999999999999999999999999976 4556889


Q ss_pred             ceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHH--HHHH-HcCCCCcccc----CcCcCChhHHHHHHHHHHH
Q psy7366         420 YIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVN--ESLN-KFALGHYSDR----EVRTLSGGNKRKLSTAIAL  492 (566)
Q Consensus       420 ~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~--~~l~-~~~l~~~~~~----~~~~LSgGqkqrv~la~al  492 (566)
                      .||.||||..+|++ |+..||.+...  ....++..+.+.  .+-+ .+++++..+.    +.-.|||||||||+|||++
T Consensus       613 ~IGVVPQDtvLFNd-TI~yNIryak~--~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARti  689 (790)
T KOG0056|consen  613 SIGVVPQDTVLFND-TILYNIRYAKP--SASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTI  689 (790)
T ss_pred             hcCcccCcceeecc-eeeeheeecCC--CCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHH
Confidence            99999999999886 99999987532  112222222221  1111 2445444343    4457999999999999999


Q ss_pred             cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         493 LGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       493 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      +++|.+++|||.||+||..+.+.+...|.+++. ++|-|+|.|.+..+-. ||.|+++++|+|++.|..+++.
T Consensus       690 LK~P~iIlLDEATSALDT~tER~IQaaL~rlca-~RTtIVvAHRLSTivn-AD~ILvi~~G~IvErG~HeeLl  760 (790)
T KOG0056|consen  690 LKAPSIILLDEATSALDTNTERAIQAALARLCA-NRTTIVVAHRLSTIVN-ADLILVISNGRIVERGRHEELL  760 (790)
T ss_pred             hcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc-CCceEEEeeeehheec-ccEEEEEeCCeEeecCcHHHHH
Confidence            999999999999999999999999999999876 6888999999999876 9999999999999999998874

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=1e-36  Score=267.09  Aligned_cols=202  Identities=21%  Similarity=0.314  Sum_probs=174.3

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCC---ccEEEEcCccCCCchHHhc
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT---SGNAYVMNHSIRDSMDLVR  418 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~  418 (566)
                      ++.++|++...+    +...|.++||+|.+|||+.|+||+|||||||+..+.|.+.++   +|+++++++.+...+ ..+
T Consensus         2 ~l~l~nvsl~l~----g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lP-a~q   76 (213)
T COG4136           2 MLCLKNVSLRLP----GSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLP-AAQ   76 (213)
T ss_pred             ceeeeeeeecCC----CceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccc-hhh
Confidence            467889987765    567899999999999999999999999999999999999874   799999999886532 345


Q ss_pred             CceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCE
Q psy7366         419 SYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPL  498 (566)
Q Consensus       419 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~l  498 (566)
                      +++|++|||+.+||.++|.+|+.|.... .++....++.+...+++.++....++.|.+||||||-||++-|+|+..|+.
T Consensus        77 Rq~GiLFQD~lLFphlsVg~Nl~fAlp~-~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~  155 (213)
T COG4136          77 RQIGILFQDALLFPHLSVGQNLLFALPA-TLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKA  155 (213)
T ss_pred             hheeeeecccccccccccccceEEecCc-ccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcce
Confidence            6899999999999999999999875432 122334456788999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHH-HHhCCcEEEEEccCHHHHHhhCCEEEEE
Q psy7366         499 IFLDEPTSGMDPGARRFLWTCIER-AVSEGRCVILTSHNMEECEALCTKLTIM  550 (566)
Q Consensus       499 llLDEPt~gLD~~~~~~l~~~l~~-~~~~g~tvl~vsHd~~~~~~~~drv~~l  550 (566)
                      ++||||+|.||..-+.++.+.+-. ....|..+|+||||..++. ...||+-|
T Consensus       156 lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvp-agsrVie~  207 (213)
T COG4136         156 LLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVP-AGSRVIEM  207 (213)
T ss_pred             eeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC-CCCeeeee
Confidence            999999999999999999997754 4455999999999999887 45666655

>PLN03140 ABC transporter G family member; Provisional

Probab=100.00  E-value=1.8e-36  Score=361.74  Aligned_cols=206  Identities=23%  Similarity=0.353  Sum_probs=178.2

Q ss_pred             CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCC---ccEEEEcCccCCCchHHhcCceEEEecCCCCCCCC
Q psy7366         358 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT---SGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRL  434 (566)
Q Consensus       358 ~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~  434 (566)
                      .+.+|+|+|+.|++|++++|+||||||||||||+|+|.++|+   +|+|.++|.++....  .++.++|++|++.+++.+
T Consensus       177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~--~~~~i~yv~Q~d~~~~~l  254 (1470)
T PLN03140        177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV--PRKTSAYISQNDVHVGVM  254 (1470)
T ss_pred             cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc--ccceeEEecccccCCCcC
Confidence            357999999999999999999999999999999999999998   999999999874321  256799999999999999


Q ss_pred             CHHHHHHHHHHhcCCC----------chHH------------------------HHHHHHHHHHcCCCCcc-----ccCc
Q psy7366         435 TPREHLEFYSRVRNVP----------SVLL------------------------NTIVNESLNKFALGHYS-----DREV  475 (566)
Q Consensus       435 tv~e~l~~~~~~~~~~----------~~~~------------------------~~~~~~~l~~~~l~~~~-----~~~~  475 (566)
                      ||+|++.|....++..          ..+.                        ...++.+++.+||.+..     +..+
T Consensus       255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~  334 (1470)
T PLN03140        255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMI  334 (1470)
T ss_pred             cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccc
Confidence            9999999976543210          1100                        01246789999997654     5677


Q ss_pred             CcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEccCH-HHHHhhCCEEEEEECC
Q psy7366         476 RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS-EGRCVILTSHNM-EECEALCTKLTIMVNG  553 (566)
Q Consensus       476 ~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~tvl~vsHd~-~~~~~~~drv~~l~~G  553 (566)
                      +.|||||||||.||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||+++|+. +++..+||+|++|++|
T Consensus       335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G  414 (1470)
T PLN03140        335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEG  414 (1470)
T ss_pred             cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCc
Confidence            89999999999999999999999999999999999999999999999976 489999999996 6888999999999999


Q ss_pred             EEEEecCccccc
Q psy7366         554 QFTCLGSATHLK  565 (566)
Q Consensus       554 ~i~~~g~~~~l~  565 (566)
                      ++++.|+.+++.
T Consensus       415 ~ivy~G~~~~~~  426 (1470)
T PLN03140        415 QIVYQGPRDHIL  426 (1470)
T ss_pred             eEEEeCCHHHHH
Confidence            999999987653

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=2.1e-36  Score=285.62  Aligned_cols=179  Identities=27%  Similarity=0.481  Sum_probs=166.6

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNK   77 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~   77 (566)
                      .|||||+|+|++++-+++   .+.+.+.. .....+|||+|.+..||+.+||.|.+.|+++.+|++..++..++..+|++
T Consensus        39 AGKTTtfRmILglle~~~G~I~~~g~~~~-~~~~~rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer  117 (300)
T COG4152          39 AGKTTTFRMILGLLEPTEGEITWNGGPLS-QEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLER  117 (300)
T ss_pred             CCccchHHHHhccCCccCceEEEcCcchh-hhhhhhcccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence            499999999999998876   24443322 23345799999999999999999999999999999999999999999999


Q ss_pred             cCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHHhhc
Q psy7366          78 FALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALC  157 (566)
Q Consensus        78 ~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~~~  157 (566)
                      +++.....+++.+||.|++||+.+..+++++|+++|||||+|||||...+.|.+.+.++++.|.|||++||+|+.++++|
T Consensus       118 ~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLC  197 (300)
T COG4152         118 LEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELC  197 (300)
T ss_pred             ccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEeCCEEEEecChhHHHhh
Q psy7366         158 TKLTIMVNGQFTCLGSATHLKSK  180 (566)
Q Consensus       158 d~i~vl~~G~i~~~g~~~~~~~~  180 (566)
                      |++++|++|+.|.+|+.++++..
T Consensus       198 D~llmL~kG~~V~~G~v~~ir~~  220 (300)
T COG4152         198 DRLLMLKKGQTVLYGTVEDIRRS  220 (300)
T ss_pred             hhhheecCCceEEeccHHHHHHh
Confidence            99999999999999999998764

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=100.00  E-value=6.1e-36  Score=306.63  Aligned_cols=179  Identities=32%  Similarity=0.535  Sum_probs=159.6

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCccc--ccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTID--KNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL   75 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~~--~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l   75 (566)
                      .||||++|+++|++.|++   .+.+.+....  ...++||||||++.+++.+||+||+.|....++.+..+..+++.+++
T Consensus        44 aGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l  123 (306)
T PRK13537         44 AGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLL  123 (306)
T ss_pred             CCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            599999999999998766   2334332211  22457999999999999999999999887777777666778899999


Q ss_pred             HHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHHh
Q psy7366          76 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEA  155 (566)
Q Consensus        76 ~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~  155 (566)
                      +.+++....++++++||||||||++||+||+++|++|||||||+||||.++.+++++|++++++|+|||++||+++++++
T Consensus       124 ~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~  203 (306)
T PRK13537        124 EFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAER  203 (306)
T ss_pred             HHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHH
Confidence            99999988999999999999999999999999999999999999999999999999999998789999999999999999


Q ss_pred             hcCEEEEEeCCEEEEecChhHHHh
Q psy7366         156 LCTKLTIMVNGQFTCLGSATHLKS  179 (566)
Q Consensus       156 ~~d~i~vl~~G~i~~~g~~~~~~~  179 (566)
                      +||||++|++|++++.|+++++..
T Consensus       204 ~~d~i~il~~G~i~~~g~~~~l~~  227 (306)
T PRK13537        204 LCDRLCVIEEGRKIAEGAPHALIE  227 (306)
T ss_pred             hCCEEEEEECCEEEEECCHHHHHh
Confidence            999999999999999999998764

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=1.5e-36  Score=296.15  Aligned_cols=180  Identities=23%  Similarity=0.302  Sum_probs=164.2

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCccc-------ccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTID-------KNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTI   70 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~~-------~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~   70 (566)
                      +||||++|+++.++-|+.   .+.+.....-       -+..+++||||.+.|+|..||.||..|+.+..|+++.+-+++
T Consensus        65 SGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~  144 (386)
T COG4175          65 SGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREER  144 (386)
T ss_pred             CCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHH
Confidence            599999999999998776   2444332211       134579999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEecCC
Q psy7366          71 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHN  149 (566)
Q Consensus        71 ~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiisH~  149 (566)
                      +.++|+.+||..+.++++.+|||||||||.|||||+.+|+|||+|||+|+|||--|.++++-|.+|.++ .+||+|||||
T Consensus       145 a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHD  224 (386)
T COG4175         145 ALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHD  224 (386)
T ss_pred             HHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecC
Confidence            999999999999999999999999999999999999999999999999999999999999999999655 9999999999


Q ss_pred             hhHHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy7366         150 MEECEALCTKLTIMVNGQFTCLGSATHLKSK  180 (566)
Q Consensus       150 ~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~~  180 (566)
                      ++|+.++.|||.+|++|+|+..|+++++...
T Consensus       225 LdEAlriG~rIaimkdG~ivQ~Gtp~eIl~~  255 (386)
T COG4175         225 LDEALRIGDRIAIMKDGEIVQVGTPEEILLN  255 (386)
T ss_pred             HHHHHhccceEEEecCCeEEEeCCHHHHHcC
Confidence            9999999999999999999999999998654

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.3e-36  Score=270.21  Aligned_cols=211  Identities=25%  Similarity=0.394  Sum_probs=183.6

Q ss_pred             eEEEeeeEEEeCCcC-C--CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCC----C-c
Q psy7366         342 VLVVKRLFKIYANSK-G--TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR----D-S  413 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~-~--~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~----~-~  413 (566)
                      .|.++|++|+|---. +  .-++|+++||+|+.|||++|=||+|+|||||||+|.|-|.|++|+|++....-+    . .
T Consensus         4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~   83 (235)
T COG4778           4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE   83 (235)
T ss_pred             eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence            588999999884210 1  246899999999999999999999999999999999999999999998654321    1 1


Q ss_pred             ----hHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCC-CccccCcCcCChhHHHHHHH
Q psy7366         414 ----MDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALG-HYSDREVRTLSGGNKRKLST  488 (566)
Q Consensus       414 ----~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqrv~l  488 (566)
                          ....++.||||+|.....|..+..|.++-+....+.+.+....++..++.++++. .++.-.|.++||||||||.|
T Consensus        84 pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNI  163 (235)
T COG4778          84 PREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNI  163 (235)
T ss_pred             hHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhh
Confidence                1234577999999987788888888888777777888888888999999999997 46778899999999999999


Q ss_pred             HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEEC
Q psy7366         489 AIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVN  552 (566)
Q Consensus       489 a~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~  552 (566)
                      ||.++.+-+||||||||++||..+++.+.++|++.+.+|.++|=+-||.+-=+.+|||++-|..
T Consensus       164 aRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~~  227 (235)
T COG4778         164 ARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVSA  227 (235)
T ss_pred             hhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeeccc
Confidence            9999999999999999999999999999999999888899999999998888889999988754

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=100.00  E-value=5.4e-34  Score=337.33  Aligned_cols=351  Identities=19%  Similarity=0.201  Sum_probs=256.7

Q ss_pred             CCCCHHHHHHHHHHhcCCChh----hHHHHHHHHHHHcCCCc-ccccccccCChhHHHHHHHHHHHhCC--CCEEEeeCC
Q psy7366          45 DRLTPREHLEFYSRVRNVPSV----LLNTIVNESLNKFALGH-YSDREVRTLSGGNKRKLSTAIALLGN--PPLIFLDEP  117 (566)
Q Consensus        45 ~~~tv~e~l~~~~~~~~~~~~----~~~~~~~~~l~~~gl~~-~~~~~~~~LSgG~kqrl~iA~al~~~--p~vLlLDEP  117 (566)
                      ..|++.|.+.|......-...    ++..|+ +.|..+||+. -++|...+|||||-||+-||..|-++  -=++|||||
T Consensus      1338 ~~l~i~~~~~~~~~l~~~~a~~il~ei~~Rl-~~l~~vGL~YLtL~R~~~TLSGGE~QRirLa~~lgs~L~gvlYVLDEP 1416 (1809)
T PRK00635       1338 YQEDVTFLKKFLLTIHDDEEPSIIQDLLNRL-TFIDKVGLSYITLGQEQDTLSDGEHYRLHLAKKISSNLTDIIYLLEDP 1416 (1809)
T ss_pred             HhCCHHHHHHHHHhccchhHHHHHHHHHHHH-HHHHhCCCCcccccCCCCCCcchHHHHHHHHHHhcCCCceeEEEeCCC
Confidence            457888888876554211111    122222 3556789987 57999999999999999999999975  468999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHHhhcCEEEEE------eCCEEEEecChhHHHhhccCccccCCCC
Q psy7366         118 TSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIM------VNGQFTCLGSATHLKSKSMALPVSGNDL  191 (566)
Q Consensus       118 t~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~~~d~i~vl------~~G~i~~~g~~~~~~~~~~~~~~~~~~~  191 (566)
                      |.||-|...+.|.+.|++|++.|.|||+|+||.+.+.. ||+|+.|      ..|+|++.|+++++...   .       
T Consensus      1417 SiGLHp~D~~~Li~~L~~Lrd~GNTvivVEHd~~~i~~-AD~iidiGPgAG~~GG~iv~~G~~~~l~~~---~------- 1485 (1809)
T PRK00635       1417 LSGLHPQDAPTLLQLIKELVTNNNTVIATDRSGSLAEH-ADHLIHLGPGSGPQGGYLLSTSALKQSQPD---L------- 1485 (1809)
T ss_pred             CcCCChhHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh-CCEEEEeCCCccCCCCEEEecCCHHHHhhh---c-------
Confidence            99999999999999999999999999999999988875 9999999      46899999999886320   0       


Q ss_pred             CCCCccchhHHHhhccCCCCccccCCCcccccccccccCCccchhhhhhhHHHHHHHHHHHHhhhhheeeccCCeeeeee
Q psy7366         192 GRGDPVRSELSRALNDGSGSGIRNSARPEVSGFYNENIDGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNGTRLVAV  271 (566)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (566)
                                    ..      .                                                         
T Consensus      1486 --------------~~------~--------------------------------------------------------- 1488 (1809)
T PRK00635       1486 --------------HN------T--------------------------------------------------------- 1488 (1809)
T ss_pred             --------------cc------c---------------------------------------------------------
Confidence                          00      0                                                         


Q ss_pred             ccchhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCcchhHHHHHHhhhcCCCCCCeEEEeeeEEE
Q psy7366         272 NIWAWRIIGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNLHPVPVSLEEDDVRKERERVEHGADSGDVLVVKRLFKI  351 (566)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~  351 (566)
                                                                        ..     .. .       .+.|++ +.+. 
T Consensus      1489 --------------------------------------------------~~-----~~-~-------~~~l~l-~a~~- 1503 (1809)
T PRK00635       1489 --------------------------------------------------RS-----SE-E-------TPTLSV-SLSI- 1503 (1809)
T ss_pred             --------------------------------------------------cc-----cc-c-------CcEEEE-eccc-
Confidence                                                              00     00 0       002445 4321 


Q ss_pred             eCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHH----------CCCCCCccEEEEcCccCCCc----h---
Q psy7366         352 YANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT----------GAIKPTSGNAYVMNHSIRDS----M---  414 (566)
Q Consensus       352 y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~----------G~~~~~~G~i~~~g~~~~~~----~---  414 (566)
                              .=|+|++.+|+-|..++|.|.+|||||||++-..          |.. .-+--|.++-.++...    +   
T Consensus      1504 --------nNLk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~~-~~~~vi~vdQspIgrt~RS~paTY 1574 (1809)
T PRK00635       1504 --------HTIQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGPS-VFSEIIFLDSHPQISSQRSDISTY 1574 (1809)
T ss_pred             --------ccCCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhccccc-ccCcEEEEeCCCCCCCCCCchhhh
Confidence                    1389999999999999999999999999997444          221 1123466776655321    0   


Q ss_pred             ----HHhcCc--------------------------------------eEEEecCC-----------------CCC----
Q psy7366         415 ----DLVRSY--------------------------------------IGYCPQFD-----------------ALN----  431 (566)
Q Consensus       415 ----~~~~~~--------------------------------------i~~v~q~~-----------------~l~----  431 (566)
                          ..+|+-                                      +.|+|+-.                 .-|    
T Consensus      1575 ~g~fd~IR~lFA~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~ 1654 (1809)
T PRK00635       1575 FDIAPSLRNFYASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKH 1654 (1809)
T ss_pred             hhhHHHHHHHHhcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCC
Confidence                111110                                      11222100                 001    


Q ss_pred             ----CCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCC-ccccCcCcCChhHHHHHHHHHHHcCC---CCEEEEeC
Q psy7366         432 ----DRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGH-YSDREVRTLSGGNKRKLSTAIALLGN---PPLIFLDE  503 (566)
Q Consensus       432 ----~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqrv~la~al~~~---p~lllLDE  503 (566)
                          -+|||.|-+.|+..   .  .. -.+.-+.|..+||.. .+.++..+|||||.||+-||..|..+   +.++||||
T Consensus      1655 I~dvL~mtv~ea~~~F~~---~--~~-i~~~L~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDE 1728 (1809)
T PRK00635       1655 FGQLLQTPIEEVAETFPF---L--KK-IQKPLQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDE 1728 (1809)
T ss_pred             HHHHhcCCHHHHHHHhhc---c--HH-HHHHHHHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcC
Confidence                13455555444421   1  11 233457788899975 46899999999999999999999876   78999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEE------CCEEEEecCccccc
Q psy7366         504 PTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMV------NGQFTCLGSATHLK  565 (566)
Q Consensus       504 Pt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~------~G~i~~~g~~~~l~  565 (566)
                      ||.||++...+.++++|+++.+.|.|||+|.||++.+.. ||+++-|-      .|+|++.|+|+++.
T Consensus      1729 Pt~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~~~i~~-aD~iidlgp~gG~~GG~iva~Gtp~~i~ 1795 (1809)
T PRK00635       1729 IATSLDNQQKSALLVQLRTLVSLGHSVIYIDHDPALLKQ-ADYLIEMGPGSGKTGGKILFSGPPKDIS 1795 (1809)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHh-CCEEEEcCCCcccCCCEEEEEeCHHHHh
Confidence            999999999999999999999999999999999999887 99999984      47899999999874

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=1.4e-36  Score=278.83  Aligned_cols=180  Identities=28%  Similarity=0.394  Sum_probs=159.6

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCc----ccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChh--hHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPT----IDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSV--LLNTIV   71 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~----~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~--~~~~~~   71 (566)
                      .||||++.|++|++.+++   .+++.+..    ....+.+|||+||+++.|..+||+||+....+....+.+  +.+.++
T Consensus        41 AGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l  120 (243)
T COG1137          41 AGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEEL  120 (243)
T ss_pred             CCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHH
Confidence            499999999999999887   22332211    123356899999999999999999999988887654444  344467


Q ss_pred             HHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChh
Q psy7366          72 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME  151 (566)
Q Consensus        72 ~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~  151 (566)
                      +++|+.|+|.+..+++..+||||||+|++|||||+.+|+++|||||++|.||.++.++.++++.|++.|..|+++.|+..
T Consensus       121 ~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR  200 (243)
T COG1137         121 DALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR  200 (243)
T ss_pred             HHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy7366         152 ECEALCTKLTIMVNGQFTCLGSATHLKSK  180 (566)
Q Consensus       152 ~~~~~~d~i~vl~~G~i~~~g~~~~~~~~  180 (566)
                      |...+|||.+++.+|++.+.|+++++..+
T Consensus       201 EtL~i~dRaYIi~~G~vla~G~p~ei~~n  229 (243)
T COG1137         201 ETLDICDRAYIISDGKVLAEGSPEEIVNN  229 (243)
T ss_pred             HHHhhhheEEEEecCeEEecCCHHHHhcC
Confidence            99999999999999999999999998754

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=100.00  E-value=7.7e-34  Score=305.94  Aligned_cols=369  Identities=23%  Similarity=0.360  Sum_probs=257.3

Q ss_pred             CCCCHHHHHHHHHHhcCCChh---hHHHHHH------HHHHHcCCCc-ccccccccCChhHHHHHHHHHHHhCCC--CEE
Q psy7366          45 DRLTPREHLEFYSRVRNVPSV---LLNTIVN------ESLNKFALGH-YSDREVRTLSGGNKRKLSTAIALLGNP--PLI  112 (566)
Q Consensus        45 ~~~tv~e~l~~~~~~~~~~~~---~~~~~~~------~~l~~~gl~~-~~~~~~~~LSgG~kqrl~iA~al~~~p--~vL  112 (566)
                      ..|++.+.+.|+.... ++..   ....-++      ..|-.+||+. -++|...+|||||.||+-||..+-++=  =++
T Consensus       427 ~~msi~~~~~f~~~l~-l~~~~~~ia~~ilkei~~RL~fL~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlY  505 (935)
T COG0178         427 SEMSIADALEFFENLK-LSEKEKKIAEPILKEIKERLGFLVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLY  505 (935)
T ss_pred             hhccHHHHHHHHHhCC-CchhhHHHHHHHHHHHHHHHHHHHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeEE
Confidence            4578888888875443 2211   1111122      2344568886 479999999999999999999998754  589


Q ss_pred             EeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHHhhcCEEEEE------eCCEEEEecChhHHHhhccCccc
Q psy7366         113 FLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIM------VNGQFTCLGSATHLKSKSMALPV  186 (566)
Q Consensus       113 lLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~~~d~i~vl------~~G~i~~~g~~~~~~~~~~~~~~  186 (566)
                      |||||+.||=+..-+.|.+.|++|++.|.|+|+|+||-+.+.. ||+|+.|      +.|+|++.|+++++......+..
T Consensus       506 VLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDedti~~-AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~~~~SlTG  584 (935)
T COG0178         506 VLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDEDTIRA-ADHIIDIGPGAGEHGGEIVAEGTPEELLANPESLTG  584 (935)
T ss_pred             EecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHHHHhh-cCEEEeeCCCCCcCCCEEEEccCHHHHHhCCcchhh
Confidence            9999999999999999999999999999999999999887765 9999998      46899999999998654211100


Q ss_pred             cCCCCCCCCccchhHHHhhccCCCCccccCCCcccccccccccCCccchhhhhhhHHHHHHHHHHHHhhhhheeeccCCe
Q psy7366         187 SGNDLGRGDPVRSELSRALNDGSGSGIRNSARPEVSGFYNENIDGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNGT  266 (566)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (566)
                                      ..+.+.     +                                                    
T Consensus       585 ----------------~YLsg~-----~----------------------------------------------------  591 (935)
T COG0178         585 ----------------QYLSGK-----K----------------------------------------------------  591 (935)
T ss_pred             ----------------HhhcCC-----c----------------------------------------------------
Confidence                            000000     0                                                    


Q ss_pred             eeeeeccchhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCcchhHHHHHHhhhcCCCCCCeEEEe
Q psy7366         267 RLVAVNIWAWRIIGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNLHPVPVSLEEDDVRKERERVEHGADSGDVLVVK  346 (566)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  346 (566)
                                                                       ..    ..+   ..+..     ..+..|+++
T Consensus       592 -------------------------------------------------~i----~vP---~~rr~-----~~~~~L~l~  610 (935)
T COG0178         592 -------------------------------------------------TI----EVP---KKRRA-----PNGKWLELK  610 (935)
T ss_pred             -------------------------------------------------cc----CCc---ccccC-----CCCCeEEEe
Confidence                                                             00    000   00100     112257777


Q ss_pred             eeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHH---------HHHCC-CCCC-----cc------EEEE
Q psy7366         347 RLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFK---------MLTGA-IKPT-----SG------NAYV  405 (566)
Q Consensus       347 ~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~---------~i~G~-~~~~-----~G------~i~~  405 (566)
                      +.+.         .=|+||+.+|+=|-+++|.|-+|||||||++         -+.+. ..|.     .|      -|.+
T Consensus       611 gA~~---------nNLkni~v~iPLg~~t~VTGVSGSGKSTLIn~tL~~a~~~~l~~~~~~p~~~~~i~G~e~idkvI~I  681 (935)
T COG0178         611 GARR---------NNLKNIDVEIPLGVFTCVTGVSGSGKSTLINDTLVPALARHLNGTKEEPGPYKKIEGLEHIDKVIDI  681 (935)
T ss_pred             cccc---------cCcccceeecccccEEEEEecCCCCHHHhHHHHHHHHHHHHhccCCCCCCCcceeechhhcCeEEEe
Confidence            6642         2389999999999999999999999999992         23331 1111     12      1344


Q ss_pred             cCccCCC----ch-------HHhcC----------------c----------------------eEE-----EecCC---
Q psy7366         406 MNHSIRD----SM-------DLVRS----------------Y----------------------IGY-----CPQFD---  428 (566)
Q Consensus       406 ~g~~~~~----~~-------~~~~~----------------~----------------------i~~-----v~q~~---  428 (566)
                      +-.++.+    ++       ..+|.                +                      +.|     ||-+.   
T Consensus       682 dQsPIGRTpRSNPATYtg~Fd~IR~lFA~tpeAK~rGyk~grFSFNvkGGRCe~C~GdG~ikIeM~FLpdVyv~CevC~G  761 (935)
T COG0178         682 DQSPIGRTPRSNPATYTGVFDDIRELFAGTPEAKARGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCEVCHG  761 (935)
T ss_pred             cCCCCCCCCCCCccchhcchHHHHHHHhcChHHHHcCCCcccccccCCCcCCccccCCceEEEEeccCCCceeeCCCcCC
Confidence            4444321    10       00000                0                      111     22110   


Q ss_pred             ---------CCCC--------CCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCC-ccccCcCcCChhHHHHHHHHH
Q psy7366         429 ---------ALND--------RLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGH-YSDREVRTLSGGNKRKLSTAI  490 (566)
Q Consensus       429 ---------~l~~--------~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqrv~la~  490 (566)
                               ..|.        +|||.|-..|+..   .+.   -.+..+.|..+||.. .+.++..+|||||.|||-||.
T Consensus       762 kRYn~EtLev~ykGK~IadVL~MTveEA~~FF~~---~p~---I~rkLqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~  835 (935)
T COG0178         762 KRYNRETLEVKYKGKNIADVLDMTVEEALEFFEA---IPK---IARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAK  835 (935)
T ss_pred             cccccceEEEEECCccHHHHHhccHHHHHHHHhc---chH---HHHHHHHHHHcCcceEecCCccccccchHHHHHHHHH
Confidence                     0011        3455554444432   111   123345677789874 468999999999999999999


Q ss_pred             HHcCCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEE------ECCEEEEecCc
Q psy7366         491 ALLGNP---PLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIM------VNGQFTCLGSA  561 (566)
Q Consensus       491 al~~~p---~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l------~~G~i~~~g~~  561 (566)
                      -|....   -++||||||.||-..-.+.+++.|.++...|-|||+|-|+++.+. .||+|+-|      ..|+|++.|+|
T Consensus       836 EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk-~AD~IIDLGPeGG~~GG~iva~GTP  914 (935)
T COG0178         836 ELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIK-TADWIIDLGPEGGDGGGEIVASGTP  914 (935)
T ss_pred             HHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceEe-ecCEEEEcCCCCCCCCceEEEecCH
Confidence            999877   899999999999999999999999999999999999999999886 49999998      45789999999


Q ss_pred             cccc
Q psy7366         562 THLK  565 (566)
Q Consensus       562 ~~l~  565 (566)
                      +++-
T Consensus       915 eeva  918 (935)
T COG0178         915 EEVA  918 (935)
T ss_pred             HHHH
Confidence            9873

>KOG0061|consensus

Probab=100.00  E-value=1.8e-35  Score=327.52  Aligned_cols=221  Identities=30%  Similarity=0.421  Sum_probs=195.0

Q ss_pred             eEEEeeeEEEeCCcC-CCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCC---CccEEEEcCccCCCchHHh
Q psy7366         342 VLVVKRLFKIYANSK-GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP---TSGNAYVMNHSIRDSMDLV  417 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~-~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~---~~G~i~~~g~~~~~~~~~~  417 (566)
                      .+..++++....... ..+.+|++||.++++||++||+||+||||||||++|+|....   .+|+|.+||++..  .+..
T Consensus        25 ~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~--~~~~  102 (613)
T KOG0061|consen   25 KLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRD--SRSF  102 (613)
T ss_pred             eeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCc--hhhh
Confidence            367778877664321 247899999999999999999999999999999999999874   6899999996543  3456


Q ss_pred             cCceEEEecCCCCCCCCCHHHHHHHHHHhcC---CCchHHHHHHHHHHHHcCCCCccccCcC-----cCChhHHHHHHHH
Q psy7366         418 RSYIGYCPQFDALNDRLTPREHLEFYSRVRN---VPSVLLNTIVNESLNKFALGHYSDREVR-----TLSGGNKRKLSTA  489 (566)
Q Consensus       418 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGqkqrv~la  489 (566)
                      ++..|||.|+..+++.+||+|++.+.+.++-   .+..+.+.+++++++.+||.+..|..++     .+|||||+||+||
T Consensus       103 ~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia  182 (613)
T KOG0061|consen  103 RKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIA  182 (613)
T ss_pred             hheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHH
Confidence            7789999999999999999999999877642   2446677899999999999988888886     5999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCH-HHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         490 IALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM-EECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       490 ~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~-~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      .-|+.+|.||+|||||+|||..+...+.+.|++++++|+|||++-|.+ .++.++.|++++|.+|++++.|+++++
T Consensus       183 ~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~  258 (613)
T KOG0061|consen  183 LELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPREL  258 (613)
T ss_pred             HHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHH
Confidence            999999999999999999999999999999999999999999999998 467778999999999999999998765

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=2.6e-36  Score=307.58  Aligned_cols=180  Identities=24%  Similarity=0.388  Sum_probs=160.9

Q ss_pred             CCcchHHHHHhccccCCCc---cCCCCCc-ccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcC-CChhhHHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQK---VPGSNPT-IDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRN-VPSVLLNTIVNESL   75 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~---~~~~~~~-~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~l   75 (566)
                      +||||++|+|.|+..|+..   +.+.+.. ....++.||||||+..|||.|||+||++|+.+..+ ....++.+++.+++
T Consensus        42 cGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L  121 (352)
T COG3842          42 CGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEAL  121 (352)
T ss_pred             CCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHH
Confidence            6999999999999987772   3332221 12345679999999999999999999999998544 45567899999999


Q ss_pred             HHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEecCChhHHH
Q psy7366          76 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS-EGRCVILTSHNMEECE  154 (566)
Q Consensus        76 ~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviiisH~~~~~~  154 (566)
                      +.++|+...++++.+|||||||||+|||||+.+|+|||||||.++||..-|.++..-|+++.+ .|.|.|++|||-+|+.
T Consensus       122 ~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl  201 (352)
T COG3842         122 ELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEAL  201 (352)
T ss_pred             HHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999999865 4999999999999999


Q ss_pred             hhcCEEEEEeCCEEEEecChhHHHhh
Q psy7366         155 ALCTKLTIMVNGQFTCLGSATHLKSK  180 (566)
Q Consensus       155 ~~~d~i~vl~~G~i~~~g~~~~~~~~  180 (566)
                      .++|||+||++|+|...|+++++...
T Consensus       202 ~msDrI~Vm~~G~I~Q~gtP~eiY~~  227 (352)
T COG3842         202 AMSDRIAVMNDGRIEQVGTPEEIYER  227 (352)
T ss_pred             hhccceEEccCCceeecCCHHHHhhC
Confidence            99999999999999999999998754

>PLN03073 ABC transporter F family; Provisional

Probab=100.00  E-value=4.5e-36  Score=337.50  Aligned_cols=215  Identities=20%  Similarity=0.267  Sum_probs=166.1

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCC---CCCccEEEEcCccCCC---c-
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI---KPTSGNAYVMNHSIRD---S-  413 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~---~~~~G~i~~~g~~~~~---~-  413 (566)
                      .+|.++|+++.|+    ++.+|+|+||+|.+|+++||+||||||||||||+|+|..   .|++|+|.+.++.+..   . 
T Consensus       176 ~~I~i~nls~~y~----~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~  251 (718)
T PLN03073        176 KDIHMENFSISVG----GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTA  251 (718)
T ss_pred             eeEEEceEEEEeC----CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCH
Confidence            4799999999996    456999999999999999999999999999999999964   5789999876554211   0 


Q ss_pred             -----------hHHhcCceEEEecCCCCCCC-CC---------------HHHHHHHH-HHhcCCCchHHHHHHHHHHHHc
Q psy7366         414 -----------MDLVRSYIGYCPQFDALNDR-LT---------------PREHLEFY-SRVRNVPSVLLNTIVNESLNKF  465 (566)
Q Consensus       414 -----------~~~~~~~i~~v~q~~~l~~~-~t---------------v~e~l~~~-~~~~~~~~~~~~~~~~~~l~~~  465 (566)
                                 ....+..++|++|++.+... .+               +.+-+.-. ..+........+.++.+++..+
T Consensus       252 ~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~l  331 (718)
T PLN03073        252 LQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGL  331 (718)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHC
Confidence                       01123446777776432111 00               10111100 0111111123456678889999


Q ss_pred             CCC-CccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhC
Q psy7366         466 ALG-HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALC  544 (566)
Q Consensus       466 ~l~-~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~  544 (566)
                      |+. ...++++.+|||||||||+||+||+.+|++|||||||++||+.++..+.+.|+++   +.|||+||||++++..+|
T Consensus       332 gl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~tviivsHd~~~l~~~~  408 (718)
T PLN03073        332 SFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKTFIVVSHAREFLNTVV  408 (718)
T ss_pred             CCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCEEEEEECCHHHHHHhC
Confidence            996 5678999999999999999999999999999999999999999999999999887   789999999999999999


Q ss_pred             CEEEEEECCEEE-EecCcc
Q psy7366         545 TKLTIMVNGQFT-CLGSAT  562 (566)
Q Consensus       545 drv~~l~~G~i~-~~g~~~  562 (566)
                      |++++|++|++. +.|+.+
T Consensus       409 d~i~~l~~g~i~~~~g~~~  427 (718)
T PLN03073        409 TDILHLHGQKLVTYKGDYD  427 (718)
T ss_pred             CEEEEEECCEEEEeCCCHH
Confidence            999999999996 566654

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=100.00  E-value=3.8e-35  Score=303.62  Aligned_cols=179  Identities=26%  Similarity=0.342  Sum_probs=158.5

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCccc------ccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTID------KNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIV   71 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~~------~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~   71 (566)
                      .||||++|+|++++.|++   .+.+......      ...++|||+||++.+++.+||.||+.+.....+.+..+..+++
T Consensus        42 aGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v  121 (343)
T TIGR02314        42 AGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKV  121 (343)
T ss_pred             CCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHH
Confidence            599999999999998765   2333322110      1245799999999999999999999998776667777788899


Q ss_pred             HHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEecCCh
Q psy7366          72 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNM  150 (566)
Q Consensus        72 ~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiisH~~  150 (566)
                      .++++.+||.+..++++.+|||||||||+|||||+.+|++|||||||++|||.++.+++++|++++++ |.|||+|||++
T Consensus       122 ~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~  201 (343)
T TIGR02314       122 TELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEM  201 (343)
T ss_pred             HHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999765 99999999999


Q ss_pred             hHHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy7366         151 EECEALCTKLTIMVNGQFTCLGSATHLKS  179 (566)
Q Consensus       151 ~~~~~~~d~i~vl~~G~i~~~g~~~~~~~  179 (566)
                      +++.++||||++|++|++++.|+++++..
T Consensus       202 ~~v~~~~d~v~vl~~G~iv~~g~~~~v~~  230 (343)
T TIGR02314       202 DVVKRICDCVAVISNGELIEQGTVSEIFS  230 (343)
T ss_pred             HHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence            99999999999999999999999988754

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.6e-35  Score=306.08  Aligned_cols=180  Identities=23%  Similarity=0.324  Sum_probs=158.7

Q ss_pred             CCcchHHHHHhccccCCCc---cCCCCCcc-cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQK---VPGSNPTI-DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLN   76 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~---~~~~~~~~-~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~   76 (566)
                      .||||++|+|.|+..+++.   +.+..... ....+.||||||++.+|+.+||+||+.|+....+.+..+..+++.++++
T Consensus        41 sGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~  120 (356)
T PRK11650         41 CGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAAR  120 (356)
T ss_pred             CcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHH
Confidence            5999999999999987651   22221111 1123579999999999999999999999876666666777788999999


Q ss_pred             HcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEecCChhHHHh
Q psy7366          77 KFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEA  155 (566)
Q Consensus        77 ~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiisH~~~~~~~  155 (566)
                      .+||+...++++.+|||||||||+|||||+.+|++|||||||++||+..++++.+.|+++.++ |.|+|++|||++++..
T Consensus       121 ~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~  200 (356)
T PRK11650        121 ILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMT  200 (356)
T ss_pred             HcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999998765 9999999999999999


Q ss_pred             hcCEEEEEeCCEEEEecChhHHHhh
Q psy7366         156 LCTKLTIMVNGQFTCLGSATHLKSK  180 (566)
Q Consensus       156 ~~d~i~vl~~G~i~~~g~~~~~~~~  180 (566)
                      +||||++|++|+++..|+++++...
T Consensus       201 l~D~i~vl~~G~i~~~g~~~~~~~~  225 (356)
T PRK11650        201 LADRVVVMNGGVAEQIGTPVEVYEK  225 (356)
T ss_pred             hCCEEEEEeCCEEEEECCHHHHHhC
Confidence            9999999999999999999988653

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=100.00  E-value=4.7e-35  Score=300.10  Aligned_cols=179  Identities=38%  Similarity=0.633  Sum_probs=157.9

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcc--cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI--DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL   75 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~--~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l   75 (566)
                      .||||++|+++|++.|++   .+.+.....  ......|||+||++.+++.+||.||+.+....++.+..+..+++.+++
T Consensus        30 aGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l  109 (302)
T TIGR01188        30 AGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELL  109 (302)
T ss_pred             CCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            599999999999998765   233322111  112346999999999999999999999887766666666677899999


Q ss_pred             HHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHHh
Q psy7366          76 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEA  155 (566)
Q Consensus        76 ~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~  155 (566)
                      +.+||....++++.+||||||||++||+||+++|++|||||||+||||.++++++++|++++++|.|||++||+++++.+
T Consensus       110 ~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~  189 (302)
T TIGR01188       110 ELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADK  189 (302)
T ss_pred             HHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHH
Confidence            99999988999999999999999999999999999999999999999999999999999998789999999999999999


Q ss_pred             hcCEEEEEeCCEEEEecChhHHHh
Q psy7366         156 LCTKLTIMVNGQFTCLGSATHLKS  179 (566)
Q Consensus       156 ~~d~i~vl~~G~i~~~g~~~~~~~  179 (566)
                      +||||++|++|+++..|+++++..
T Consensus       190 ~~d~v~~l~~G~i~~~g~~~~l~~  213 (302)
T TIGR01188       190 LCDRIAIIDHGRIIAEGTPEELKR  213 (302)
T ss_pred             hCCEEEEEECCEEEEECCHHHHHH
Confidence            999999999999999999988754

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.5e-35  Score=303.89  Aligned_cols=180  Identities=25%  Similarity=0.329  Sum_probs=159.7

Q ss_pred             CCcchHHHHHhccccCCCc---cCCCCCcc-cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQK---VPGSNPTI-DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLN   76 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~---~~~~~~~~-~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~   76 (566)
                      .||||++|+|.|+..++..   +.+..... ....+.||||||++.+|+.+||+||+.|+...++.+..+..+++.++++
T Consensus        43 sGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~  122 (351)
T PRK11432         43 CGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALE  122 (351)
T ss_pred             CcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHH
Confidence            5999999999999987652   33322111 1223579999999999999999999999887767777778889999999


Q ss_pred             HcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEecCChhHHHh
Q psy7366          77 KFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEA  155 (566)
Q Consensus        77 ~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiisH~~~~~~~  155 (566)
                      .+||....++++.+|||||||||+|||||+.+|++|||||||++||+..++++.+.|+++.++ |.|+|++|||++++..
T Consensus       123 ~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~  202 (351)
T PRK11432        123 LVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFA  202 (351)
T ss_pred             HcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999665 9999999999999999


Q ss_pred             hcCEEEEEeCCEEEEecChhHHHhh
Q psy7366         156 LCTKLTIMVNGQFTCLGSATHLKSK  180 (566)
Q Consensus       156 ~~d~i~vl~~G~i~~~g~~~~~~~~  180 (566)
                      +||||++|++|+++..|+++++...
T Consensus       203 laD~i~vm~~G~i~~~g~~~~~~~~  227 (351)
T PRK11432        203 VSDTVIVMNKGKIMQIGSPQELYRQ  227 (351)
T ss_pred             hCCEEEEEECCEEEEEcCHHHHHhC
Confidence            9999999999999999999988653

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=100.00  E-value=6e-35  Score=303.81  Aligned_cols=180  Identities=22%  Similarity=0.287  Sum_probs=159.2

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcc---ccc----ccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI---DKN----LSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTI   70 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~---~~~----~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~   70 (566)
                      .||||++|+++|++.|..   .+.+.....   ...    .+.||||||++.+++.+||.||+.|..+..+++..+..++
T Consensus        30 sGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~  109 (363)
T TIGR01186        30 SGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEK  109 (363)
T ss_pred             ChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHH
Confidence            599999999999997765   233322111   111    4579999999999999999999999887777777777889


Q ss_pred             HHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEecCC
Q psy7366          71 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHN  149 (566)
Q Consensus        71 ~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiisH~  149 (566)
                      +.++++.+||+...++++.+|||||||||+|||||+.+|++|||||||++|||.+++++.+.|.++.++ |+|||++|||
T Consensus       110 ~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd  189 (363)
T TIGR01186       110 ALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHD  189 (363)
T ss_pred             HHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            999999999998999999999999999999999999999999999999999999999999999999654 9999999999


Q ss_pred             hhHHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy7366         150 MEECEALCTKLTIMVNGQFTCLGSATHLKSK  180 (566)
Q Consensus       150 ~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~~  180 (566)
                      ++++..+||||++|++|+++..|+++++...
T Consensus       190 ~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~  220 (363)
T TIGR01186       190 LDEAIRIGDRIVIMKAGEIVQVGTPDEILRN  220 (363)
T ss_pred             HHHHHHhCCEEEEEeCCEEEeeCCHHHHHhC
Confidence            9999999999999999999999999987643

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=100.00  E-value=7.2e-35  Score=302.01  Aligned_cols=180  Identities=32%  Similarity=0.533  Sum_probs=158.6

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcc--cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI--DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL   75 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~--~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l   75 (566)
                      .||||++|+++|++.|++   .+.|.....  ......|||+||++.+++.+||.||+.++...++.+..+..+++.+++
T Consensus        78 aGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll  157 (340)
T PRK13536         78 AGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLL  157 (340)
T ss_pred             CCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            599999999999998766   233432211  123457999999999999999999999877666665555667788999


Q ss_pred             HHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHHh
Q psy7366          76 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEA  155 (566)
Q Consensus        76 ~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~  155 (566)
                      +.+||....++++.+||||||||++||+||+++|++|||||||+||||.++.+++++|++++++|+|||++||+++++++
T Consensus       158 ~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~  237 (340)
T PRK13536        158 EFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAER  237 (340)
T ss_pred             HHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHH
Confidence            99999998999999999999999999999999999999999999999999999999999998789999999999999999


Q ss_pred             hcCEEEEEeCCEEEEecChhHHHhh
Q psy7366         156 LCTKLTIMVNGQFTCLGSATHLKSK  180 (566)
Q Consensus       156 ~~d~i~vl~~G~i~~~g~~~~~~~~  180 (566)
                      +||||++|++|++++.|+++++...
T Consensus       238 ~~d~i~il~~G~i~~~g~~~~l~~~  262 (340)
T PRK13536        238 LCDRLCVLEAGRKIAEGRPHALIDE  262 (340)
T ss_pred             hCCEEEEEECCEEEEEcCHHHHHhh
Confidence            9999999999999999999987643

>PLN03232 ABC transporter C family member; Provisional

Probab=100.00  E-value=5.1e-35  Score=353.68  Aligned_cols=202  Identities=21%  Similarity=0.375  Sum_probs=166.3

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCce
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYI  421 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i  421 (566)
                      .++++|+++.|+.. .++++|+|+||+|++|+.++|+||+|||||||+++|.|+++|++|.+..           .+..|
T Consensus       614 ~I~~~~vsF~y~~~-~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~-----------~~~~I  681 (1495)
T PLN03232        614 AISIKNGYFSWDSK-TSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVV-----------IRGSV  681 (1495)
T ss_pred             cEEEEeeEEEcCCC-CCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEE-----------ecCcE
Confidence            58999999999632 1357999999999999999999999999999999999999999987631           24579


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCC-----------ccccCcCcCChhHHHHHHHHH
Q psy7366         422 GYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGH-----------YSDREVRTLSGGNKRKLSTAI  490 (566)
Q Consensus       422 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGqkqrv~la~  490 (566)
                      +||+|+|.+|+. |++|||.|+..   .+    +++..++++..++.+           .......+||||||||++|||
T Consensus       682 ayv~Q~p~Lf~g-TIreNI~fg~~---~~----~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLAR  753 (1495)
T PLN03232        682 AYVPQVSWIFNA-TVRENILFGSD---FE----SERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMAR  753 (1495)
T ss_pred             EEEcCccccccc-cHHHHhhcCCc---cC----HHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHH
Confidence            999999999876 99999988632   11    234455555555432           122344579999999999999


Q ss_pred             HHcCCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         491 ALLGNPPLIFLDEPTSGMDPGARRFLWTC-IERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       491 al~~~p~lllLDEPt~gLD~~~~~~l~~~-l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      |+..+|+|||||||||+||+.+.+.+.+. +... .+++|+|++||+++.+. .||+|++|++|++++.|+.+++.
T Consensus       754 Aly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~-l~~kT~IlvTH~~~~l~-~aD~Ii~L~~G~i~~~Gt~~eL~  827 (1495)
T PLN03232        754 AVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDE-LKGKTRVLVTNQLHFLP-LMDRIILVSEGMIKEEGTFAELS  827 (1495)
T ss_pred             HHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhh-hcCCEEEEEECChhhHH-hCCEEEEEeCCEEEEecCHHHHH
Confidence            99999999999999999999998877654 5543 35899999999998865 59999999999999999987763

>PLN03130 ABC transporter C family member; Provisional

Probab=100.00  E-value=6.1e-35  Score=353.27  Aligned_cols=201  Identities=21%  Similarity=0.400  Sum_probs=167.9

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCc-cEEEEcCccCCCchHHhcCc
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS-GNAYVMNHSIRDSMDLVRSY  420 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~-G~i~~~g~~~~~~~~~~~~~  420 (566)
                      .++++|+++.|+.. .++++|+|+||+|++|+.++|+||+|||||||+++|.|+++|++ |+|.+.+            +
T Consensus       614 ~I~~~nvsf~y~~~-~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~------------~  680 (1622)
T PLN03130        614 AISIKNGYFSWDSK-AERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRG------------T  680 (1622)
T ss_pred             ceEEEeeEEEccCC-CCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcC------------e
Confidence            59999999999632 13579999999999999999999999999999999999999999 9998643            6


Q ss_pred             eEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCC-----------ccccCcCcCChhHHHHHHHH
Q psy7366         421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGH-----------YSDREVRTLSGGNKRKLSTA  489 (566)
Q Consensus       421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGqkqrv~la  489 (566)
                      |+||+|+|.+++. |++|||.|+..   .    .+++..++++..++.+           .......+||||||||++||
T Consensus       681 Iayv~Q~p~Lfng-TIreNI~fg~~---~----d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLA  752 (1622)
T PLN03130        681 VAYVPQVSWIFNA-TVRDNILFGSP---F----DPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMA  752 (1622)
T ss_pred             EEEEcCccccCCC-CHHHHHhCCCc---c----cHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHH
Confidence            9999999999875 99999988632   1    1334555666555532           12234557999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         490 IALLGNPPLIFLDEPTSGMDPGARRFLW-TCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       490 ~al~~~p~lllLDEPt~gLD~~~~~~l~-~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      ||+..+|+|||||||||+||+++.+.+. +++..+. +|+|+|++||+++.+. .||+|++|++|++++.|+.+++.
T Consensus       753 RAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~~l~-~aD~Ii~L~~G~i~e~Gt~~eL~  827 (1622)
T PLN03130        753 RAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLVTNQLHFLS-QVDRIILVHEGMIKEEGTYEELS  827 (1622)
T ss_pred             HHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEEECCHhHHH-hCCEEEEEeCCEEEEeCCHHHHH
Confidence            9999999999999999999999888775 4565543 5899999999998765 59999999999999999988763

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=100.00  E-value=7.4e-35  Score=303.90  Aligned_cols=180  Identities=22%  Similarity=0.296  Sum_probs=159.2

Q ss_pred             CCcchHHHHHhccccCCC--c---cCCCCCcc-cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ--K---VPGSNPTI-DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNES   74 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~--~---~~~~~~~~-~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~   74 (566)
                      .||||++|+|.|+..++.  .   +.+..... ....+.||||+|++.+|+.+||+||+.|+....+.+..+..+++.++
T Consensus        42 sGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~  121 (362)
T TIGR03258        42 CGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADA  121 (362)
T ss_pred             CCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            599999999999998754  1   22221111 11235799999999999999999999998876677777788899999


Q ss_pred             HHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEecCChhH
Q psy7366          75 LNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE--GRCVILTSHNMEE  152 (566)
Q Consensus        75 l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~--g~tviiisH~~~~  152 (566)
                      ++.+||+...++++.+|||||||||+|||||+.+|++|||||||++||+..+.++.+.|+++.++  |.|+|++|||+++
T Consensus       122 l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~e  201 (362)
T TIGR03258       122 LKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDD  201 (362)
T ss_pred             HHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999776  8999999999999


Q ss_pred             HHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy7366         153 CEALCTKLTIMVNGQFTCLGSATHLKSK  180 (566)
Q Consensus       153 ~~~~~d~i~vl~~G~i~~~g~~~~~~~~  180 (566)
                      +..+||||++|++|+++..|+++++...
T Consensus       202 a~~l~dri~vl~~G~i~~~g~~~~~~~~  229 (362)
T TIGR03258       202 ALTLADKAGIMKDGRLAAHGEPQALYDA  229 (362)
T ss_pred             HHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence            9999999999999999999999998653

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=5.8e-35  Score=284.08  Aligned_cols=178  Identities=24%  Similarity=0.383  Sum_probs=148.4

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcccccccceeEEcCCCCCC--CCCCHHHHHHHHHHhc----CCChhhHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTIDKNLSYIGYCPQFDALN--DRLTPREHLEFYSRVR----NVPSVLLNTIV   71 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~~~~~~~ig~v~Q~~~l~--~~~tv~e~l~~~~~~~----~~~~~~~~~~~   71 (566)
                      .||||++|+|+|++.|.+   .+.+..........+||||||...+.  .-+||+|.+.+++..+    +.....-++++
T Consensus        41 aGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v  120 (254)
T COG1121          41 AGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKV  120 (254)
T ss_pred             CCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHH
Confidence            499999999999998766   23333222223346799999976443  3479999998763221    12223347889


Q ss_pred             HHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChh
Q psy7366          72 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME  151 (566)
Q Consensus        72 ~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~  151 (566)
                      +++|+++|+.+..++++++|||||+|||.|||||+.+|++|||||||+|+|+.++..++++|++++++|+|||+||||++
T Consensus       121 ~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~  200 (254)
T COG1121         121 DEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG  200 (254)
T ss_pred             HHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH
Confidence            99999999999999999999999999999999999999999999999999999999999999999988999999999999


Q ss_pred             HHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy7366         152 ECEALCTKLTIMVNGQFTCLGSATHLKS  179 (566)
Q Consensus       152 ~~~~~~d~i~vl~~G~i~~~g~~~~~~~  179 (566)
                      .+.+.||+|+.| |+++++.|++++...
T Consensus       201 ~v~~~~D~vi~L-n~~~~~~G~~~~~~~  227 (254)
T COG1121         201 LVMAYFDRVICL-NRHLIASGPPEEVLT  227 (254)
T ss_pred             HhHhhCCEEEEE-cCeeEeccChhhccC
Confidence            999999999988 567788899888643

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=100.00  E-value=9.9e-35  Score=351.65  Aligned_cols=204  Identities=21%  Similarity=0.366  Sum_probs=168.9

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCce
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYI  421 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i  421 (566)
                      .++++|+++.|+.  ..+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|            +|
T Consensus       636 ~i~~~~~~~~~~~--~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------~i  701 (1522)
T TIGR00957       636 SITVHNATFTWAR--DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG------------SV  701 (1522)
T ss_pred             cEEEEEeEEEcCC--CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC------------EE
Confidence            6999999999963  135799999999999999999999999999999999999999999999987            49


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHH--HHHHHcCC-----CCccccCcCcCChhHHHHHHHHHHHcC
Q psy7366         422 GYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVN--ESLNKFAL-----GHYSDREVRTLSGGNKRKLSTAIALLG  494 (566)
Q Consensus       422 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~--~~l~~~~l-----~~~~~~~~~~LSgGqkqrv~la~al~~  494 (566)
                      +||||++.+++ .|++||+.++..   ......++..+  .+.+.++.     ....+.+..+||||||||++||||++.
T Consensus       702 ~yv~Q~~~l~~-~Ti~eNI~~g~~---~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~  777 (1522)
T TIGR00957       702 AYVPQQAWIQN-DSLRENILFGKA---LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYS  777 (1522)
T ss_pred             EEEcCCccccC-CcHHHHhhcCCc---cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhc
Confidence            99999998875 599999987532   11211111111  11222222     223456788999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHH--HhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         495 NPPLIFLDEPTSGMDPGARRFLWTCIERA--VSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       495 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~--~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      +|+++||||||++||+.+.+.+.+.+.+.  ..+++|+|++||+++.+.. ||+|++|++|++++.|+.+++
T Consensus       778 ~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~-~D~ii~l~~G~i~~~g~~~~l  848 (1522)
T TIGR00957       778 NADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQ-VDVIIVMSGGKISEMGSYQEL  848 (1522)
T ss_pred             CCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhh-CCEEEEecCCeEEeeCCHHHH
Confidence            99999999999999999999999988653  2347999999999999876 999999999999999998775

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=100.00  E-value=8.8e-35  Score=302.84  Aligned_cols=180  Identities=25%  Similarity=0.305  Sum_probs=159.3

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcc-cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI-DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLN   76 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~-~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~   76 (566)
                      .||||++|+|.|+..++.   .+.+..... ....+.||||||++.+|+.+||+||+.|+....+.+..+..++++++++
T Consensus        41 sGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~  120 (353)
T TIGR03265        41 CGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLD  120 (353)
T ss_pred             CCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            599999999999987755   233322111 1224579999999999999999999999877666777777889999999


Q ss_pred             HcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEecCChhHHHh
Q psy7366          77 KFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEA  155 (566)
Q Consensus        77 ~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiisH~~~~~~~  155 (566)
                      .+||+...++++.+|||||||||+|||||+.+|++|||||||++||+..++++.+.|+++.++ |.|+|++|||++++..
T Consensus       121 ~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~  200 (353)
T TIGR03265       121 LVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALS  200 (353)
T ss_pred             HcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999998665 9999999999999999


Q ss_pred             hcCEEEEEeCCEEEEecChhHHHhh
Q psy7366         156 LCTKLTIMVNGQFTCLGSATHLKSK  180 (566)
Q Consensus       156 ~~d~i~vl~~G~i~~~g~~~~~~~~  180 (566)
                      +||||++|++|+++..|+++++...
T Consensus       201 l~d~i~vl~~G~i~~~g~~~~~~~~  225 (353)
T TIGR03265       201 MADRIVVMNHGVIEQVGTPQEIYRH  225 (353)
T ss_pred             hCCEEEEEECCEEEEEcCHHHHHhC
Confidence            9999999999999999999988653

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=100.00  E-value=4.5e-34  Score=280.58  Aligned_cols=193  Identities=18%  Similarity=0.267  Sum_probs=140.6

Q ss_pred             CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHH-HHHHCCCCCCccEEEEcC-------cc---CCCc-hHHh-cCceEEE
Q psy7366         358 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTF-KMLTGAIKPTSGNAYVMN-------HS---IRDS-MDLV-RSYIGYC  424 (566)
Q Consensus       358 ~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl-~~i~G~~~~~~G~i~~~g-------~~---~~~~-~~~~-~~~i~~v  424 (566)
                      +..+|+++||+|++||++||+||||||||||+ ..|..     +|++.+..       ..   +... .... ....++.
T Consensus         7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (226)
T cd03270           7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA-----EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIA   81 (226)
T ss_pred             hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH-----HHHHHHhhcccchhhhhhcccCccccccccCCCceEE
Confidence            45699999999999999999999999999995 44431     33322110       00   0000 0011 1234455


Q ss_pred             ecCCC--CCCCCCHHH---HHHHHHHhcCCCchHHHHHHHHHHHHcCCCC-ccccCcCcCChhHHHHHHHHHHHcCCC--
Q psy7366         425 PQFDA--LNDRLTPRE---HLEFYSRVRNVPSVLLNTIVNESLNKFALGH-YSDREVRTLSGGNKRKLSTAIALLGNP--  496 (566)
Q Consensus       425 ~q~~~--l~~~~tv~e---~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqrv~la~al~~~p--  496 (566)
                      .|++.  +.+..++..   ...+.....  .......+ .++++.+++.+ ..++++.+|||||||||+|||||+.+|  
T Consensus        82 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~~~-~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~  158 (226)
T cd03270          82 IDQKTTSRNPRSTVGTVTEIYDYLRLLF--ARVGIRER-LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTG  158 (226)
T ss_pred             ecCCCCCCCCCccHHHHHHHHHHHHHHh--hhhhHHHH-HHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCC
Confidence            55432  334445442   222221111  11112223 56899999986 589999999999999999999999998  


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEE------ECCEEEEec
Q psy7366         497 PLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIM------VNGQFTCLG  559 (566)
Q Consensus       497 ~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l------~~G~i~~~g  559 (566)
                      ++|||||||+|||+.++..+.+.|++++++|.|||++|||++++ .+|||+++|      ++|+|+++|
T Consensus       159 ~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~-~~~d~i~~l~~~~~~~~G~iv~~g  226 (226)
T cd03270         159 VLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTI-RAADHVIDIGPGAGVHGGEIVAQG  226 (226)
T ss_pred             CEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHH-HhCCEEEEeCCCccccCCEEEecC
Confidence            59999999999999999999999999987799999999999987 589999999      999999876

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=100.00  E-value=2.8e-34  Score=300.60  Aligned_cols=180  Identities=21%  Similarity=0.326  Sum_probs=158.5

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcc-cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI-DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLN   76 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~-~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~   76 (566)
                      .||||++|+|.|+..+++   .+.+..... ....+.||||||++.+|+.+||.||+.|+....+.+..+..+++.++++
T Consensus        51 sGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~  130 (375)
T PRK09452         51 CGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALR  130 (375)
T ss_pred             CcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Confidence            599999999999998754   123322111 1223579999999999999999999999876666666677788999999


Q ss_pred             HcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEecCChhHHHh
Q psy7366          77 KFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEA  155 (566)
Q Consensus        77 ~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiisH~~~~~~~  155 (566)
                      .+||+...++++.+|||||||||+|||||+.+|++|||||||++||+..++++.+.|+++.++ |.|+|++|||.+++..
T Consensus       131 ~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~  210 (375)
T PRK09452        131 MVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALT  210 (375)
T ss_pred             HcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999998765 9999999999999999


Q ss_pred             hcCEEEEEeCCEEEEecChhHHHhh
Q psy7366         156 LCTKLTIMVNGQFTCLGSATHLKSK  180 (566)
Q Consensus       156 ~~d~i~vl~~G~i~~~g~~~~~~~~  180 (566)
                      +||||++|++|+++..|+++++...
T Consensus       211 laDri~vl~~G~i~~~g~~~~i~~~  235 (375)
T PRK09452        211 MSDRIVVMRDGRIEQDGTPREIYEE  235 (375)
T ss_pred             hCCEEEEEECCEEEEEcCHHHHHhC
Confidence            9999999999999999999988654

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4e-34  Score=299.99  Aligned_cols=180  Identities=22%  Similarity=0.337  Sum_probs=158.5

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcc-cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI-DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLN   76 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~-~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~   76 (566)
                      .||||++|+|.|+..+++   .+.+..... ...++.||||||++.+|+.+||.||+.|+....+.+..+..+++.++++
T Consensus        56 sGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~  135 (377)
T PRK11607         56 CGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLG  135 (377)
T ss_pred             CcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            599999999999997765   233322111 1234579999999999999999999999876666667777889999999


Q ss_pred             HcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEecCChhHHHh
Q psy7366          77 KFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS-EGRCVILTSHNMEECEA  155 (566)
Q Consensus        77 ~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviiisH~~~~~~~  155 (566)
                      .+||....++++.+|||||||||+|||||+.+|++|||||||++||+..++++.+.|+++.+ .|.|+|++|||++++..
T Consensus       136 ~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~  215 (377)
T PRK11607        136 LVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMT  215 (377)
T ss_pred             HcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999855 49999999999999999


Q ss_pred             hcCEEEEEeCCEEEEecChhHHHhh
Q psy7366         156 LCTKLTIMVNGQFTCLGSATHLKSK  180 (566)
Q Consensus       156 ~~d~i~vl~~G~i~~~g~~~~~~~~  180 (566)
                      +||||++|++|+++..|+++++...
T Consensus       216 laDri~vl~~G~i~~~g~~~~~~~~  240 (377)
T PRK11607        216 MAGRIAIMNRGKFVQIGEPEEIYEH  240 (377)
T ss_pred             hCCEEEEEeCCEEEEEcCHHHHHhC
Confidence            9999999999999999999988653

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=100.00  E-value=6.1e-34  Score=343.83  Aligned_cols=189  Identities=21%  Similarity=0.387  Sum_probs=157.0

Q ss_pred             cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHH
Q psy7366         359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPRE  438 (566)
Q Consensus       359 ~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e  438 (566)
                      +++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.++|            +|+||+|++.+++. |++|
T Consensus       439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g------------~iayv~Q~~~l~~~-Ti~e  505 (1490)
T TIGR01271       439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG------------RISFSPQTSWIMPG-TIKD  505 (1490)
T ss_pred             CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC------------EEEEEeCCCccCCc-cHHH
Confidence            4689999999999999999999999999999999999999999999988            49999999999875 9999


Q ss_pred             HHHHHHHhcCCCchHHHHH-----HHHHHHHcCCC--CccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHH
Q psy7366         439 HLEFYSRVRNVPSVLLNTI-----VNESLNKFALG--HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPG  511 (566)
Q Consensus       439 ~l~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~--~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~  511 (566)
                      |+.|+...   ......+.     +.+.++.+...  .....+..+|||||||||+||||++.+|+++||||||++||+.
T Consensus       506 NI~~g~~~---~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~  582 (1490)
T TIGR01271       506 NIIFGLSY---DEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVV  582 (1490)
T ss_pred             HHHhcccc---chHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence            99876321   11111111     12223332221  1245567899999999999999999999999999999999999


Q ss_pred             HHHHHHHH-HHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         512 ARRFLWTC-IERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       512 ~~~~l~~~-l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      +.+.+++. +..+. +|+|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus       583 ~~~~i~~~~l~~~~-~~~tvilvtH~~~~~~~-ad~ii~l~~g~i~~~g~~~~l~  635 (1490)
T TIGR01271       583 TEKEIFESCLCKLM-SNKTRILVTSKLEHLKK-ADKILLLHEGVCYFYGTFSELQ  635 (1490)
T ss_pred             HHHHHHHHHHHHHh-cCCeEEEEeCChHHHHh-CCEEEEEECCEEEEEcCHHHHH
Confidence            99999984 56654 48999999999999865 9999999999999999987663

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=100.00  E-value=1.3e-34  Score=283.07  Aligned_cols=179  Identities=25%  Similarity=0.337  Sum_probs=153.5

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcc---cccccceeEEcCCCCCCCCCCHHHHHHHHHHhc----CCChhhHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI---DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVR----NVPSVLLNTI   70 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~---~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~   70 (566)
                      +||||++|++++++.|.+   .+.+.+...   +...+.++||||.+...+.+||.|.+.++..-+    +....+-.+.
T Consensus        39 ~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~  118 (258)
T COG1120          39 SGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEI  118 (258)
T ss_pred             CCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHH
Confidence            599999999999998655   244433221   223457999999998889999999998875431    1123334457


Q ss_pred             HHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEecCC
Q psy7366          71 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS-EGRCVILTSHN  149 (566)
Q Consensus        71 ~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviiisH~  149 (566)
                      +.++|+.+|+.+..+|.+.+||||||||+.||+||+.+|++|+||||||+||...+-+++++++++.+ +|.|||++.||
T Consensus       119 v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHD  198 (258)
T COG1120         119 VEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHD  198 (258)
T ss_pred             HHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence            89999999999999999999999999999999999999999999999999999999999999999974 59999999999


Q ss_pred             hhHHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy7366         150 MEECEALCTKLTIMVNGQFTCLGSATHLKS  179 (566)
Q Consensus       150 ~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~  179 (566)
                      ++.+.++||++++|++|+++..|+++++..
T Consensus       199 lN~A~ryad~~i~lk~G~i~a~G~p~evlT  228 (258)
T COG1120         199 LNLAARYADHLILLKDGKIVAQGTPEEVLT  228 (258)
T ss_pred             HHHHHHhCCEEEEEECCeEEeecCcchhcC
Confidence            999999999999999999999999988643

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.4e-34  Score=273.57  Aligned_cols=178  Identities=25%  Similarity=0.351  Sum_probs=153.7

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCccc----ccccceeEEcCCC--CCCCCCCHHHHHHHHHHhcCCChhhHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTID----KNLSYIGYCPQFD--ALNDRLTPREHLEFYSRVRNVPSVLLNTIV   71 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~~----~~~~~ig~v~Q~~--~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~   71 (566)
                      +||||++|+++|+..+.+   .+.|......    .....|-+|||||  ++.|..||++-+.-.....+++.  .++++
T Consensus        44 sGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~--~~~~i  121 (252)
T COG1124          44 SGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSK--SQQRI  121 (252)
T ss_pred             CCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhccCCccH--HHHHH
Confidence            599999999999998766   2333222211    2345699999999  57789999999987766655544  45559


Q ss_pred             HHHHHHcCCCc-ccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEecCC
Q psy7366          72 NESLNKFALGH-YSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHN  149 (566)
Q Consensus        72 ~~~l~~~gl~~-~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiisH~  149 (566)
                      .++|+.+||.. .++|++.+|||||+||++|||||+.+|++||||||||+||+.-+.+++++|.+++++ |.|+||||||
T Consensus       122 ~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHd  201 (252)
T COG1124         122 AELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHD  201 (252)
T ss_pred             HHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCc
Confidence            99999999985 789999999999999999999999999999999999999999999999999999765 8899999999


Q ss_pred             hhHHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy7366         150 MEECEALCTKLTIMVNGQFTCLGSATHLKSK  180 (566)
Q Consensus       150 ~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~~  180 (566)
                      +..+..+||||+||++|++++.++.+++...
T Consensus       202 l~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~  232 (252)
T COG1124         202 LALVEHMCDRIAVMDNGQIVEIGPTEELLSH  232 (252)
T ss_pred             HHHHHHHhhheeeeeCCeEEEeechhhhhcC
Confidence            9999999999999999999999999988755

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=100.00  E-value=6.3e-34  Score=291.87  Aligned_cols=179  Identities=32%  Similarity=0.541  Sum_probs=155.1

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcc--cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI--DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL   75 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~--~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l   75 (566)
                      .||||++|+++|++.|.+   .+.+.....  ......|||+||++.+++.+||.||+.+....++.+..+..+++.+++
T Consensus        41 aGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll  120 (303)
T TIGR01288        41 AGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLL  120 (303)
T ss_pred             CCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            599999999999987654   122322111  112457999999999999999999998766555555555667788999


Q ss_pred             HHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHHh
Q psy7366          76 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEA  155 (566)
Q Consensus        76 ~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~  155 (566)
                      +.+|+....++++.+||||||||++||+||+.+|++|||||||+|||+.++++++++|++++++|.|||++||+++++.+
T Consensus       121 ~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~  200 (303)
T TIGR01288       121 EFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAER  200 (303)
T ss_pred             HHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHH
Confidence            99999988999999999999999999999999999999999999999999999999999998789999999999999999


Q ss_pred             hcCEEEEEeCCEEEEecChhHHHh
Q psy7366         156 LCTKLTIMVNGQFTCLGSATHLKS  179 (566)
Q Consensus       156 ~~d~i~vl~~G~i~~~g~~~~~~~  179 (566)
                      +||||++|++|+++..|+++++..
T Consensus       201 ~~d~i~~l~~G~i~~~g~~~~~~~  224 (303)
T TIGR01288       201 LCDRLCVLESGRKIAEGRPHALID  224 (303)
T ss_pred             hCCEEEEEECCEEEEEcCHHHHHh
Confidence            999999999999999999988754

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.7e-34  Score=298.94  Aligned_cols=179  Identities=24%  Similarity=0.334  Sum_probs=156.5

Q ss_pred             CCcchHHHHHhccccCCCc---cCCCCCcc-cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQK---VPGSNPTI-DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLN   76 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~---~~~~~~~~-~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~   76 (566)
                      .||||++|+|+|++.+++.   +.+..... ....+.||||||++.+++.+||.||+.|+....+.+..+..+++.++++
T Consensus        40 sGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~  119 (369)
T PRK11000         40 CGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAE  119 (369)
T ss_pred             CcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHH
Confidence            5999999999999876541   22221111 1123569999999999999999999998876656666667788999999


Q ss_pred             HcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEecCChhHHHh
Q psy7366          77 KFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEA  155 (566)
Q Consensus        77 ~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiisH~~~~~~~  155 (566)
                      .+||+...++++.+|||||||||+||+||+.+|++|||||||++||+.+++++.+.|+++.++ |.|||++|||++++..
T Consensus       120 ~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~  199 (369)
T PRK11000        120 VLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMT  199 (369)
T ss_pred             HcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHH
Confidence            999998899999999999999999999999999999999999999999999999999998765 9999999999999999


Q ss_pred             hcCEEEEEeCCEEEEecChhHHHh
Q psy7366         156 LCTKLTIMVNGQFTCLGSATHLKS  179 (566)
Q Consensus       156 ~~d~i~vl~~G~i~~~g~~~~~~~  179 (566)
                      +||||++|++|+++..|+++++..
T Consensus       200 ~~d~i~vl~~G~i~~~g~~~~i~~  223 (369)
T PRK11000        200 LADKIVVLDAGRVAQVGKPLELYH  223 (369)
T ss_pred             hCCEEEEEECCEEEEEcCHHHHHh
Confidence            999999999999999999998764

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=100.00  E-value=6.3e-34  Score=291.50  Aligned_cols=178  Identities=27%  Similarity=0.429  Sum_probs=157.3

Q ss_pred             CCcchHHHHHhccccCCCc---cCCCCCcc--cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQK---VPGSNPTI--DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL   75 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~---~~~~~~~~--~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l   75 (566)
                      .||||++|+++|++.++..   +.+.....  ....+++||+||++.+++.+||.||+.+....++.+..+..+++++++
T Consensus        39 aGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l  118 (301)
T TIGR03522        39 AGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMI  118 (301)
T ss_pred             CCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            5999999999999877662   33322211  122357999999999999999999999887777766666677899999


Q ss_pred             HHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHHh
Q psy7366          76 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEA  155 (566)
Q Consensus        76 ~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~  155 (566)
                      +.+||+...++++.+||||||||++||+||+++|++|||||||+|||+.++++++++|+++++ ++|||++||+++++.+
T Consensus       119 ~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~~~~~  197 (301)
T TIGR03522       119 ELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQEVEA  197 (301)
T ss_pred             HHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHH
Confidence            999999989999999999999999999999999999999999999999999999999999854 7999999999999999


Q ss_pred             hcCEEEEEeCCEEEEecChhHHHh
Q psy7366         156 LCTKLTIMVNGQFTCLGSATHLKS  179 (566)
Q Consensus       156 ~~d~i~vl~~G~i~~~g~~~~~~~  179 (566)
                      +||||++|++|+++..|+++++..
T Consensus       198 ~~d~i~~l~~G~i~~~g~~~~~~~  221 (301)
T TIGR03522       198 ICDRVIIINKGKIVADKKLDELSA  221 (301)
T ss_pred             hCCEEEEEECCEEEEeCCHHHHHH
Confidence            999999999999999999998765

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=100.00  E-value=6.1e-34  Score=296.51  Aligned_cols=180  Identities=23%  Similarity=0.331  Sum_probs=156.2

Q ss_pred             CCcchHHHHHhccccCCCc---cCCCCCcc-cccccceeEEcCCCCCCCCCCHHHHHHHHHHhc----CCChhhHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQK---VPGSNPTI-DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVR----NVPSVLLNTIVN   72 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~---~~~~~~~~-~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~   72 (566)
                      .||||++|+|+|++.++..   +.+..... ....+.||||||++.+|+.+||.||+.|.....    +.+..+..+++.
T Consensus        39 sGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~  118 (353)
T PRK10851         39 SGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVT  118 (353)
T ss_pred             CCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHH
Confidence            5999999999999876551   22322111 122357999999999999999999999876542    344556778999


Q ss_pred             HHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEecCChh
Q psy7366          73 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNME  151 (566)
Q Consensus        73 ~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiisH~~~  151 (566)
                      ++++.+||+...++++.+|||||||||+|||||+.+|++|||||||++||+..++++.+.|++++++ |.|+|++|||++
T Consensus       119 ~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~  198 (353)
T PRK10851        119 QLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE  198 (353)
T ss_pred             HHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999766 899999999999


Q ss_pred             HHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy7366         152 ECEALCTKLTIMVNGQFTCLGSATHLKSK  180 (566)
Q Consensus       152 ~~~~~~d~i~vl~~G~i~~~g~~~~~~~~  180 (566)
                      ++..+||||++|++|+++..|+++++...
T Consensus       199 ea~~~~Dri~vl~~G~i~~~g~~~~i~~~  227 (353)
T PRK10851        199 EAMEVADRVVVMSQGNIEQAGTPDQVWRE  227 (353)
T ss_pred             HHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence            99999999999999999999999998653

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=100.00  E-value=7.4e-34  Score=281.14  Aligned_cols=178  Identities=28%  Similarity=0.367  Sum_probs=152.2

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcc------cccccceeEEcCCCCCCCCCCHHHHHHHHHHhc-CCChhhHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI------DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVR-NVPSVLLNTI   70 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~------~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~-~~~~~~~~~~   70 (566)
                      .||||++|+++|++.|..   .+.+.....      ......|||+||++.+++.+||.||+.+..... +.+..+..++
T Consensus        37 sGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~  116 (235)
T cd03261          37 SGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREI  116 (235)
T ss_pred             CCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHH
Confidence            599999999999987654   122221111      112356999999999999999999998865432 3455556678


Q ss_pred             HHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEecCC
Q psy7366          71 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHN  149 (566)
Q Consensus        71 ~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiisH~  149 (566)
                      +.++++.+|+....++++.+||||||||++||+||+.+|++|||||||++||+.+++.+.++|++++++ |+|||++||+
T Consensus       117 ~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~  196 (235)
T cd03261         117 VLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHD  196 (235)
T ss_pred             HHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecC
Confidence            899999999998889999999999999999999999999999999999999999999999999998764 8999999999


Q ss_pred             hhHHHhhcCEEEEEeCCEEEEecChhHHH
Q psy7366         150 MEECEALCTKLTIMVNGQFTCLGSATHLK  178 (566)
Q Consensus       150 ~~~~~~~~d~i~vl~~G~i~~~g~~~~~~  178 (566)
                      ++++..+||||++|++|+++..|+++++.
T Consensus       197 ~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  225 (235)
T cd03261         197 LDTAFAIADRIAVLYDGKIVAEGTPEELR  225 (235)
T ss_pred             HHHHHHhcCEEEEEECCeEEEecCHHHHc
Confidence            99999999999999999999999888764

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.3e-34  Score=267.14  Aligned_cols=178  Identities=20%  Similarity=0.279  Sum_probs=152.6

Q ss_pred             CCcchHHHHHhccc--cC-----------CCccCCCCCcccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhH
Q psy7366           1 MGLTTTPKRVVTLL--LT-----------TQKVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLL   67 (566)
Q Consensus         1 ~Gktt~~k~~~~~~--~~-----------~~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~   67 (566)
                      +||||++|+++-+.  ++           |+.+.......-..+++||||||.|.-|| +|++||++|+.+..|+...++
T Consensus        44 cGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~~~l  122 (253)
T COG1117          44 CGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKDKEL  122 (253)
T ss_pred             cCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccchHHH
Confidence            59999999987542  22           22222211111234568999999999888 999999999999888766888


Q ss_pred             HHHHHHHHHHcCCC----cccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy7366          68 NTIVNESLNKFALG----HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCV  143 (566)
Q Consensus        68 ~~~~~~~l~~~gl~----~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tv  143 (566)
                      ++.+++.|+...|.    +.+++....|||||+||++|||||+-+|+|||||||||+|||.+...+.++|.+|+ +.-||
T Consensus       123 deiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTI  201 (253)
T COG1117         123 DEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTI  201 (253)
T ss_pred             HHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEE
Confidence            99999999988875    35688899999999999999999999999999999999999999999999999996 67899


Q ss_pred             EEecCChhHHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy7366         144 ILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK  180 (566)
Q Consensus       144 iiisH~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~~  180 (566)
                      |+|||+|.-+.+++|+..++..|++++.|+++++...
T Consensus       202 viVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF~~  238 (253)
T COG1117         202 VIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFTN  238 (253)
T ss_pred             EEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhhcC
Confidence            9999999999999999999999999999999998654

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=100.00  E-value=8.9e-34  Score=277.72  Aligned_cols=177  Identities=37%  Similarity=0.537  Sum_probs=152.1

Q ss_pred             CCcchHHHHHhccccCCCc---cCCCCCc--ccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQK---VPGSNPT--IDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL   75 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~---~~~~~~~--~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l   75 (566)
                      .||||++|+++|++.|.+.   +.+....  ......+++|+||++.+++.+||.||+.+.....+.+..+..+++.+++
T Consensus        37 sGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l  116 (220)
T cd03265          37 AGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELL  116 (220)
T ss_pred             CCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            5999999999999876541   2222111  1122356999999999999999999999876655555555677889999


Q ss_pred             HHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEecCChhHHH
Q psy7366          76 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECE  154 (566)
Q Consensus        76 ~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiisH~~~~~~  154 (566)
                      +.+|++...++++.+||||||||++||+||+.+|++|||||||++||+.+++.+.++|++++++ |+|||++||+++++.
T Consensus       117 ~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~  196 (220)
T cd03265         117 DFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAE  196 (220)
T ss_pred             HHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence            9999998889999999999999999999999999999999999999999999999999999776 899999999999999


Q ss_pred             hhcCEEEEEeCCEEEEecChhHH
Q psy7366         155 ALCTKLTIMVNGQFTCLGSATHL  177 (566)
Q Consensus       155 ~~~d~i~vl~~G~i~~~g~~~~~  177 (566)
                      .+||||++|++|+++..|+++++
T Consensus       197 ~~~d~i~~l~~G~i~~~~~~~~~  219 (220)
T cd03265         197 QLCDRVAIIDHGRIIAEGTPEEL  219 (220)
T ss_pred             HhCCEEEEEeCCEEEEeCChHHc
Confidence            99999999999999988877653

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8.4e-34  Score=290.34  Aligned_cols=179  Identities=22%  Similarity=0.282  Sum_probs=154.5

Q ss_pred             CCcchHHHHHhccccCCCc---cCCCCC---------------------------cccccccceeEEcCCCC-CCCCCCH
Q psy7366           1 MGLTTTPKRVVTLLLTTQK---VPGSNP---------------------------TIDKNLSYIGYCPQFDA-LNDRLTP   49 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~---~~~~~~---------------------------~~~~~~~~ig~v~Q~~~-l~~~~tv   49 (566)
                      .||||++|+++|++.|+..   +.+...                           .......+||||||+|. .+...||
T Consensus        44 sGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv  123 (305)
T PRK13651         44 SGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTI  123 (305)
T ss_pred             CcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccH
Confidence            5999999999999977652   222111                           00112357999999973 3345799


Q ss_pred             HHHHHHHHHhcCCChhhHHHHHHHHHHHcCCC-cccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHH
Q psy7366          50 REHLEFYSRVRNVPSVLLNTIVNESLNKFALG-HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRF  128 (566)
Q Consensus        50 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~  128 (566)
                      +||+.|+....+.+..+..+++.++++.+||+ ...++++.+||||||||++||+||+.+|++|||||||++||+.+++.
T Consensus       124 ~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~  203 (305)
T PRK13651        124 EKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKE  203 (305)
T ss_pred             HHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHH
Confidence            99999987777777778888999999999997 67899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCEEEEecCChhHHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy7366         129 LWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  179 (566)
Q Consensus       129 l~~~l~~l~~~g~tviiisH~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~  179 (566)
                      +.++|++++++|.|||++|||++++.++||||++|++|+++..|+++++..
T Consensus       204 l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~G~i~~~g~~~~~~~  254 (305)
T PRK13651        204 ILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDILS  254 (305)
T ss_pred             HHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence            999999998779999999999999999999999999999999999988754

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.8e-34  Score=291.06  Aligned_cols=212  Identities=24%  Similarity=0.383  Sum_probs=178.6

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCc
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSY  420 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~  420 (566)
                      .+.+.++++.|.   ..+++|+++||++++|+.++++||+|+||||++++|..++.+.+|.|.++|++++. ....+|+-
T Consensus       262 ~v~F~~V~F~y~---~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~a  338 (497)
T COG5265         262 AVAFINVSFAYD---PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRA  338 (497)
T ss_pred             eEEEEEEEeecc---ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHH
Confidence            478899999997   37889999999999999999999999999999999999999999999999999976 34567888


Q ss_pred             eEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCC-------CCccc----cCcCcCChhHHHHHHHH
Q psy7366         421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFAL-------GHYSD----REVRTLSGGNKRKLSTA  489 (566)
Q Consensus       421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~----~~~~~LSgGqkqrv~la  489 (566)
                      ||.||||..||++ |+..|+.++..-  ....+    +..+.+...+       ++..+    .+.-.|||||||||+||
T Consensus       339 Ig~VPQDtvLFND-ti~yni~ygr~~--at~ee----v~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaia  411 (497)
T COG5265         339 IGIVPQDTVLFND-TIAYNIKYGRPD--ATAEE----VGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIA  411 (497)
T ss_pred             hCcCcccceehhh-hHHHHHhccCcc--ccHHH----HHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHH
Confidence            9999999998876 999999875321  11111    1222222222       22233    34457999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         490 IALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       490 ~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      |+++++|+||+|||.||+||..+.+++...|++.. .|.|-+++.|.+..+.. ||.|+||++|+|++.|+.+++.
T Consensus       412 r~ilk~p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrlsti~~-adeiivl~~g~i~erg~h~~ll  485 (497)
T COG5265         412 RTILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLSTIID-ADEIIVLDNGRIVERGTHEELL  485 (497)
T ss_pred             HHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhhhccC-CceEEEeeCCEEEecCcHHHHH
Confidence            99999999999999999999999999999999875 58999999999999987 9999999999999999998874

>PTZ00243 ABC transporter; Provisional

Probab=100.00  E-value=1e-33  Score=342.16  Aligned_cols=190  Identities=23%  Similarity=0.338  Sum_probs=157.4

Q ss_pred             CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHH
Q psy7366         358 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPR  437 (566)
Q Consensus       358 ~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~  437 (566)
                      ++++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+.            ++|+|+||++.+++ .|++
T Consensus       672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~------------~~i~yv~Q~~~l~~-~Tv~  738 (1560)
T PTZ00243        672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE------------RSIAYVPQQAWIMN-ATVR  738 (1560)
T ss_pred             CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC------------CeEEEEeCCCccCC-CcHH
Confidence            4569999999999999999999999999999999999999999999863            36999999998875 6999


Q ss_pred             HHHHHHHHhcCCCchHHH-----HHHHHHHHHc--CCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCH
Q psy7366         438 EHLEFYSRVRNVPSVLLN-----TIVNESLNKF--ALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDP  510 (566)
Q Consensus       438 e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~  510 (566)
                      ||+.++...   ......     ..+.+.++.+  |+....+.++.+|||||||||+|||||+.+|++|||||||++||+
T Consensus       739 enI~~~~~~---~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~  815 (1560)
T PTZ00243        739 GNILFFDEE---DAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDA  815 (1560)
T ss_pred             HHHHcCChh---hHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCH
Confidence            999875321   111111     1223345555  565566788999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         511 GARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       511 ~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      .+.+.+++.+.....+|+|+|++||+++.+. .||++++|++|++++.|+.+++
T Consensus       816 ~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~-~ad~ii~l~~G~i~~~G~~~~l  868 (1560)
T PTZ00243        816 HVGERVVEECFLGALAGKTRVLATHQVHVVP-RADYVVALGDGRVEFSGSSADF  868 (1560)
T ss_pred             HHHHHHHHHHHHHhhCCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEecCHHHH
Confidence            9988887643222235899999999999985 6999999999999999998775

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.5e-33  Score=293.28  Aligned_cols=179  Identities=26%  Similarity=0.365  Sum_probs=155.8

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcc---c---ccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI---D---KNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIV   71 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~---~---~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~   71 (566)
                      .||||++|+++|++.|.+   .+.+.....   .   ...+.|||+||++.+++.+||.||+.+.....+.+..+..+++
T Consensus        42 sGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~  121 (343)
T PRK11153         42 AGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARV  121 (343)
T ss_pred             CcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHH
Confidence            599999999999997654   133322111   0   1135799999999999999999999988766666666667789


Q ss_pred             HHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEecCCh
Q psy7366          72 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNM  150 (566)
Q Consensus        72 ~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiisH~~  150 (566)
                      .++++.+||+...++++.+||||||||++||+||+.+|++|||||||++||+.++.+++++|++++++ |+|||++||++
T Consensus       122 ~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~  201 (343)
T PRK11153        122 TELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEM  201 (343)
T ss_pred             HHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence            99999999998889999999999999999999999999999999999999999999999999999665 99999999999


Q ss_pred             hHHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy7366         151 EECEALCTKLTIMVNGQFTCLGSATHLKS  179 (566)
Q Consensus       151 ~~~~~~~d~i~vl~~G~i~~~g~~~~~~~  179 (566)
                      +++.++||||++|++|+++..|+++++..
T Consensus       202 ~~i~~~~d~v~~l~~G~i~~~g~~~~~~~  230 (343)
T PRK11153        202 DVVKRICDRVAVIDAGRLVEQGTVSEVFS  230 (343)
T ss_pred             HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            99999999999999999999999888753

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=100.00  E-value=1.6e-33  Score=291.17  Aligned_cols=179  Identities=25%  Similarity=0.378  Sum_probs=155.7

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcc-cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI-DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLN   76 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~-~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~   76 (566)
                      .||||++|+|+|++.+.+   .+.+..... ....+.|||++|++.+++.+||.||+.|.....+.+..+..+++.++++
T Consensus         7 sGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~   86 (325)
T TIGR01187         7 CGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPRVLEALR   86 (325)
T ss_pred             CCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Confidence            599999999999997654   123322111 1123569999999999999999999998866555555566778999999


Q ss_pred             HcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEecCChhHHHh
Q psy7366          77 KFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEA  155 (566)
Q Consensus        77 ~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiisH~~~~~~~  155 (566)
                      .+||+...++++.+||||||||++||+||+.+|++|||||||++||+.+++++++.|+++.++ |.|||++||+++++..
T Consensus        87 ~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~e~~~  166 (325)
T TIGR01187        87 LVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMT  166 (325)
T ss_pred             HcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence            999998899999999999999999999999999999999999999999999999999998665 9999999999999999


Q ss_pred             hcCEEEEEeCCEEEEecChhHHHh
Q psy7366         156 LCTKLTIMVNGQFTCLGSATHLKS  179 (566)
Q Consensus       156 ~~d~i~vl~~G~i~~~g~~~~~~~  179 (566)
                      +||||++|++|+++..|+++++..
T Consensus       167 ~~d~i~vl~~G~i~~~g~~~~~~~  190 (325)
T TIGR01187       167 MSDRIAIMRKGKIAQIGTPEEIYE  190 (325)
T ss_pred             hCCEEEEEECCEEEEEcCHHHHHh
Confidence            999999999999999999998764

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=1.6e-33  Score=270.29  Aligned_cols=168  Identities=23%  Similarity=0.286  Sum_probs=144.8

Q ss_pred             CCcchHHHHHhccccCCCc---cCCCCCc---cc----ccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQK---VPGSNPT---ID----KNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTI   70 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~---~~~~~~~---~~----~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~   70 (566)
                      +||||+++++-++..|+..   +.+.+..   ..    -+...||||+|+..|.+.+||.||+.+.....+.+.....++
T Consensus        42 SGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~  121 (226)
T COG1136          42 SGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRA  121 (226)
T ss_pred             CCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHH
Confidence            5999999999999988662   3332111   11    134679999999999999999999999887777665567788


Q ss_pred             HHHHHHHcCCCcccc-cccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEecC
Q psy7366          71 VNESLNKFALGHYSD-REVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSH  148 (566)
Q Consensus        71 ~~~~l~~~gl~~~~~-~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiisH  148 (566)
                      +.++++.+||++..+ +++.+|||||||||+|||||+.+|+++|.||||.+||..+.+.++++++++.++ |+|||+|||
T Consensus       122 ~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTH  201 (226)
T COG1136         122 AEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTH  201 (226)
T ss_pred             HHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcC
Confidence            999999999997665 899999999999999999999999999999999999999999999999999765 999999999


Q ss_pred             ChhHHHhhcCEEEEEeCCEEE
Q psy7366         149 NMEECEALCTKLTIMVNGQFT  169 (566)
Q Consensus       149 ~~~~~~~~~d~i~vl~~G~i~  169 (566)
                      |...+. .|||++.|++|++.
T Consensus       202 d~~lA~-~~dr~i~l~dG~~~  221 (226)
T COG1136         202 DPELAK-YADRVIELKDGKIE  221 (226)
T ss_pred             CHHHHH-hCCEEEEEeCCeee
Confidence            986665 79999999999943

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=100.00  E-value=1.9e-33  Score=273.95  Aligned_cols=172  Identities=29%  Similarity=0.364  Sum_probs=146.1

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcc-cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI-DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLN   76 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~-~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~   76 (566)
                      .||||++|++.|++.|..   .+.+..... ......|+|+||++.+++.+|+.||+.+.....+.+.....+++.++++
T Consensus        37 sGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~  116 (213)
T cd03259          37 CGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLE  116 (213)
T ss_pred             CCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHH
Confidence            599999999999986644   122221111 1123469999999999999999999988655444444555677899999


Q ss_pred             HcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEecCChhHHHh
Q psy7366          77 KFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS-EGRCVILTSHNMEECEA  155 (566)
Q Consensus        77 ~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviiisH~~~~~~~  155 (566)
                      .+|+....++++.+||||||||++||+||+.+|++|||||||++||+.++.+++++|+++++ .|.|||++||+++++.+
T Consensus       117 ~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~  196 (213)
T cd03259         117 LVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALA  196 (213)
T ss_pred             HcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHH
Confidence            99999888999999999999999999999999999999999999999999999999999876 49999999999999999


Q ss_pred             hcCEEEEEeCCEEEEec
Q psy7366         156 LCTKLTIMVNGQFTCLG  172 (566)
Q Consensus       156 ~~d~i~vl~~G~i~~~g  172 (566)
                      +||+|++|++|+++..|
T Consensus       197 ~~d~v~~l~~G~i~~~g  213 (213)
T cd03259         197 LADRIAVMNEGRIVQVG  213 (213)
T ss_pred             hcCEEEEEECCEEEecC
Confidence            99999999999998654

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=100.00  E-value=1.6e-33  Score=257.04  Aligned_cols=172  Identities=23%  Similarity=0.253  Sum_probs=156.5

Q ss_pred             CCcchHHHHHhccccCCCc---cCCCCCccc------ccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQK---VPGSNPTID------KNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIV   71 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~---~~~~~~~~~------~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~   71 (566)
                      .||||++|+|++...|++.   +.+.+...-      -.+++||+|+||..|.+..||+||++|..+..|.++.++++++
T Consensus        39 AGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV  118 (223)
T COG2884          39 AGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRV  118 (223)
T ss_pred             CCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHH
Confidence            4999999999999988772   233221111      1246799999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChh
Q psy7366          72 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME  151 (566)
Q Consensus        72 ~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~  151 (566)
                      .++|+.+||.+..+..+.+||||||||++||||++.+|+|||-||||.+|||....++.+++.++.+.|.|||++|||.+
T Consensus       119 ~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~  198 (223)
T COG2884         119 SEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLE  198 (223)
T ss_pred             HHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCEEEEEeCCEEEEec
Q psy7366         152 ECEALCTKLTIMVNGQFTCLG  172 (566)
Q Consensus       152 ~~~~~~d~i~vl~~G~i~~~g  172 (566)
                      .+..+--|++.|++|+++.+.
T Consensus       199 lv~~~~~rvl~l~~Grl~~d~  219 (223)
T COG2884         199 LVNRMRHRVLALEDGRLVRDE  219 (223)
T ss_pred             HHHhccCcEEEEeCCEEEecc
Confidence            999999999999999998653

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.8e-33  Score=294.62  Aligned_cols=179  Identities=21%  Similarity=0.296  Sum_probs=155.9

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCccc---c----cccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTID---K----NLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTI   70 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~~---~----~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~   70 (566)
                      +||||++|+++|++.|..   .+.+......   .    ....|||+||++.+++.+||.||+.+.....+++..+..++
T Consensus        65 sGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~  144 (400)
T PRK10070         65 SGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREK  144 (400)
T ss_pred             chHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHH
Confidence            599999999999997655   1333221110   0    12469999999999999999999998876666666666778


Q ss_pred             HHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEecCC
Q psy7366          71 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS-EGRCVILTSHN  149 (566)
Q Consensus        71 ~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviiisH~  149 (566)
                      +.++++.+||+...++++.+||||||||++||+||+.+|++|||||||++||+.+++++++.|+++++ .|+|||++||+
T Consensus       145 ~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd  224 (400)
T PRK10070        145 ALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHD  224 (400)
T ss_pred             HHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence            99999999999889999999999999999999999999999999999999999999999999999865 58999999999


Q ss_pred             hhHHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy7366         150 MEECEALCTKLTIMVNGQFTCLGSATHLKS  179 (566)
Q Consensus       150 ~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~  179 (566)
                      ++++..+||+|++|++|+++..|+++++..
T Consensus       225 ~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~  254 (400)
T PRK10070        225 LDEAMRIGDRIAIMQNGEVVQVGTPDEILN  254 (400)
T ss_pred             HHHHHHhCCEEEEEECCEEEecCCHHHHHh
Confidence            999999999999999999999999988754

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=100.00  E-value=3.2e-33  Score=276.74  Aligned_cols=178  Identities=26%  Similarity=0.329  Sum_probs=150.7

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCccc---c-cccceeEEcCCCCCCCCCCHHHHHHHHHHhcCC----------C
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTID---K-NLSYIGYCPQFDALNDRLTPREHLEFYSRVRNV----------P   63 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~~---~-~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~----------~   63 (566)
                      .||||++|++.|++.+.+   .+.+......   . ...+|+|+||++.+++.+||.||+.+.......          .
T Consensus        37 sGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~  116 (236)
T cd03219          37 AGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARRE  116 (236)
T ss_pred             CCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhcccccccccccccc
Confidence            599999999999987544   1222211111   1 124699999999999999999999887543321          1


Q ss_pred             hhhHHHHHHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy7366          64 SVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCV  143 (566)
Q Consensus        64 ~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tv  143 (566)
                      ..+..+++.++++.+|++...++++.+||||||||++||+||+.+|++|||||||++||+.++++++++|++++++|+||
T Consensus       117 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ti  196 (236)
T cd03219         117 EREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITV  196 (236)
T ss_pred             HHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEE
Confidence            33456678999999999988899999999999999999999999999999999999999999999999999997789999


Q ss_pred             EEecCChhHHHhhcCEEEEEeCCEEEEecChhHHH
Q psy7366         144 ILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  178 (566)
Q Consensus       144 iiisH~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~  178 (566)
                      |++||+++++..+||+|++|++|+++..|+++++.
T Consensus       197 i~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  231 (236)
T cd03219         197 LLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVR  231 (236)
T ss_pred             EEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhc
Confidence            99999999999999999999999999999888764

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=100.00  E-value=3.3e-33  Score=292.08  Aligned_cols=179  Identities=22%  Similarity=0.303  Sum_probs=157.1

Q ss_pred             CCcchHHHHHhccccCCC---ccCCC----CCcc---c----ccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhh
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGS----NPTI---D----KNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVL   66 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~----~~~~---~----~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~   66 (566)
                      .||||++|+++|++.|..   .+.+.    ....   .    ....+|+|+||++.+++.+||.||+.++....+.+..+
T Consensus        61 sGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~  140 (382)
T TIGR03415        61 SGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAE  140 (382)
T ss_pred             CcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHH
Confidence            599999999999997655   23331    1110   0    01247999999999999999999999987666776667


Q ss_pred             HHHHHHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEE
Q psy7366          67 LNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVIL  145 (566)
Q Consensus        67 ~~~~~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tvii  145 (566)
                      ..+++.++++.+||....++++.+||||||||++||+||+.+|+||||||||++|||.++.++++.|.+++++ |+|||+
T Consensus       141 ~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~  220 (382)
T TIGR03415       141 RRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIF  220 (382)
T ss_pred             HHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence            7788999999999999999999999999999999999999999999999999999999999999999999765 999999


Q ss_pred             ecCChhHHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy7366         146 TSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  179 (566)
Q Consensus       146 isH~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~  179 (566)
                      ||||++++.++||||++|++|+++..|+++++..
T Consensus       221 iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~  254 (382)
T TIGR03415       221 VSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVL  254 (382)
T ss_pred             EeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence            9999999999999999999999999999998754

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=100.00  E-value=1.6e-33  Score=275.12  Aligned_cols=168  Identities=25%  Similarity=0.331  Sum_probs=144.1

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcc---c---ccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI---D---KNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIV   71 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~---~---~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~   71 (566)
                      .||||++|+++|++.+.+   .+.+.....   .   ...+.|+|+||++.+++.+||.||+.+.....+.+..+..+++
T Consensus        40 sGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~  119 (216)
T TIGR00960        40 AGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERV  119 (216)
T ss_pred             CCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHH
Confidence            599999999999987644   122221110   0   1234799999999999999999999987655555555566788


Q ss_pred             HHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChh
Q psy7366          72 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME  151 (566)
Q Consensus        72 ~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~  151 (566)
                      .++++.+|+....++++.+||||||||++||+||+.+|++|||||||++||+.+++++.++|++++++|.|||++|||++
T Consensus       120 ~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~  199 (216)
T TIGR00960       120 SAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN  199 (216)
T ss_pred             HHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            99999999998889999999999999999999999999999999999999999999999999999777999999999999


Q ss_pred             HHHhhcCEEEEEeCCEE
Q psy7366         152 ECEALCTKLTIMVNGQF  168 (566)
Q Consensus       152 ~~~~~~d~i~vl~~G~i  168 (566)
                      ++..+||+|++|++|++
T Consensus       200 ~~~~~~d~i~~l~~G~i  216 (216)
T TIGR00960       200 LVETYRHRTLTLSRGRL  216 (216)
T ss_pred             HHHHhCCEEEEEeCCcC
Confidence            99999999999999974

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=100.00  E-value=3.2e-33  Score=273.80  Aligned_cols=172  Identities=25%  Similarity=0.313  Sum_probs=147.4

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNK   77 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~   77 (566)
                      .||||++|+++|++.+.+   .+.+....  .....|+|+||++.+++.+|+.||+.+.....+.+.....+++.++++.
T Consensus        41 sGKSTLl~~l~Gl~~~~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~  118 (220)
T cd03293          41 CGKSTLLRIIAGLERPTSGEVLVDGEPVT--GPGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLEL  118 (220)
T ss_pred             CCHHHHHHHHhCCCCCCceEEEECCEECc--cccCcEEEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            599999999999986644   12222111  2235699999999998889999999887655555555556788999999


Q ss_pred             cCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEecCChhHHHhh
Q psy7366          78 FALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS-EGRCVILTSHNMEECEAL  156 (566)
Q Consensus        78 ~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviiisH~~~~~~~~  156 (566)
                      +|+....++++.+||||||||++||+||+.+|++|||||||++||+.++++++++|+++.+ .|+|||++||+++++.++
T Consensus       119 ~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~  198 (220)
T cd03293         119 VGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFL  198 (220)
T ss_pred             cCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHh
Confidence            9999888999999999999999999999999999999999999999999999999999855 589999999999999999


Q ss_pred             cCEEEEEe--CCEEEEecCh
Q psy7366         157 CTKLTIMV--NGQFTCLGSA  174 (566)
Q Consensus       157 ~d~i~vl~--~G~i~~~g~~  174 (566)
                      ||++++|+  +|+++..+++
T Consensus       199 ~d~i~~l~~~~G~i~~~~~~  218 (220)
T cd03293         199 ADRVVVLSARPGRIVAEVEV  218 (220)
T ss_pred             CCEEEEEECCCCEEEEEEEe
Confidence            99999999  7999987654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=100.00  E-value=3.2e-33  Score=273.41  Aligned_cols=172  Identities=30%  Similarity=0.521  Sum_probs=148.4

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcc--cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI--DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL   75 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~--~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l   75 (566)
                      .||||++|++.|++.+.+   .+.+.....  ......|||+||++.+++.+||.||+.+....++.+..+..+++.+++
T Consensus        42 sGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l  121 (218)
T cd03266          42 AGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELA  121 (218)
T ss_pred             CCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            599999999999987654   122221111  122357999999999999999999998876655555556677889999


Q ss_pred             HHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHHh
Q psy7366          76 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEA  155 (566)
Q Consensus        76 ~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~  155 (566)
                      +.+|++...++++.+||||||||++||+||+.+|++|||||||++||+.+++++.++|++++++|.|||++||+++++..
T Consensus       122 ~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~  201 (218)
T cd03266         122 DRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVER  201 (218)
T ss_pred             HHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            99999988899999999999999999999999999999999999999999999999999997779999999999999999


Q ss_pred             hcCEEEEEeCCEEEEec
Q psy7366         156 LCTKLTIMVNGQFTCLG  172 (566)
Q Consensus       156 ~~d~i~vl~~G~i~~~g  172 (566)
                      +||||++|++|+++..|
T Consensus       202 ~~d~i~~l~~G~i~~~~  218 (218)
T cd03266         202 LCDRVVVLHRGRVVYEG  218 (218)
T ss_pred             hcCEEEEEECCEEeecC
Confidence            99999999999998643

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.1e-33  Score=283.58  Aligned_cols=179  Identities=25%  Similarity=0.353  Sum_probs=153.1

Q ss_pred             CCcchHHHHHhccccCCCc---cCCCCCcc-----cccccceeEEcCCCC-CCCCCCHHHHHHHHHHhcCCChhhHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQK---VPGSNPTI-----DKNLSYIGYCPQFDA-LNDRLTPREHLEFYSRVRNVPSVLLNTIV   71 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~---~~~~~~~~-----~~~~~~ig~v~Q~~~-l~~~~tv~e~l~~~~~~~~~~~~~~~~~~   71 (566)
                      .||||++|+++|++.+.+.   +.+.....     ......||||||+|. .+...||+||+.|.....+.+..+..+++
T Consensus        44 aGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~  123 (287)
T PRK13637         44 SGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRV  123 (287)
T ss_pred             CcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHH
Confidence            5999999999999876551   33322111     122357999999984 23457999999987766667777777889


Q ss_pred             HHHHHHcCCC--cccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEecC
Q psy7366          72 NESLNKFALG--HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSH  148 (566)
Q Consensus        72 ~~~l~~~gl~--~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiisH  148 (566)
                      .++++.+||.  ...++++.+||||||||++||+||+.+|++|||||||++||+.++.+++++|++++++ |.|||++||
T Consensus       124 ~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtH  203 (287)
T PRK13637        124 KRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSH  203 (287)
T ss_pred             HHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence            9999999997  5689999999999999999999999999999999999999999999999999999765 999999999


Q ss_pred             ChhHHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy7366         149 NMEECEALCTKLTIMVNGQFTCLGSATHLKS  179 (566)
Q Consensus       149 ~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~  179 (566)
                      +++++..+||||++|++|++++.|+++++..
T Consensus       204 d~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  234 (287)
T PRK13637        204 SMEDVAKLADRIIVMNKGKCELQGTPREVFK  234 (287)
T ss_pred             CHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            9999999999999999999999999988753

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=100.00  E-value=5.1e-33  Score=274.76  Aligned_cols=178  Identities=26%  Similarity=0.347  Sum_probs=152.4

Q ss_pred             CCcchHHHHHhccccCCCc---cCCCCCccc------ccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQK---VPGSNPTID------KNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIV   71 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~---~~~~~~~~~------~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~   71 (566)
                      .||||++|+++|++.+...   +.+......      .....|+|+||++.+++.+|+.||+.+.....+.......+++
T Consensus        42 sGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~  121 (233)
T cd03258          42 AGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERV  121 (233)
T ss_pred             CCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHH
Confidence            5999999999999976541   222211110      1135799999999999999999999886554455444556778


Q ss_pred             HHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEecCCh
Q psy7366          72 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNM  150 (566)
Q Consensus        72 ~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiisH~~  150 (566)
                      .++++.+|++...++++.+||||||||++||+||+.+|++|||||||++||+.+++.+.++|++++++ |+|||++||++
T Consensus       122 ~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~  201 (233)
T cd03258         122 LELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEM  201 (233)
T ss_pred             HHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            99999999998889999999999999999999999999999999999999999999999999998765 89999999999


Q ss_pred             hHHHhhcCEEEEEeCCEEEEecChhHHH
Q psy7366         151 EECEALCTKLTIMVNGQFTCLGSATHLK  178 (566)
Q Consensus       151 ~~~~~~~d~i~vl~~G~i~~~g~~~~~~  178 (566)
                      +++.++||++++|++|+++..|+++++.
T Consensus       202 ~~~~~~~d~i~~l~~G~i~~~~~~~~~~  229 (233)
T cd03258         202 EVVKRICDRVAVMEKGEVVEEGTVEEVF  229 (233)
T ss_pred             HHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence            9999999999999999999999887764

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=100.00  E-value=5e-33  Score=275.91  Aligned_cols=178  Identities=25%  Similarity=0.350  Sum_probs=150.2

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcc-cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCC----ChhhHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI-DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNV----PSVLLNTIVN   72 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~-~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~----~~~~~~~~~~   72 (566)
                      .||||++|+++|++.+..   .+.+..... ......|+|++|++.+++.+||.||+.+.....+.    +..+..+++.
T Consensus        39 sGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~  118 (239)
T cd03296          39 SGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVH  118 (239)
T ss_pred             CCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHH
Confidence            599999999999986644   122221110 11235699999999999899999999886544332    3334456788


Q ss_pred             HHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEecCChh
Q psy7366          73 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNME  151 (566)
Q Consensus        73 ~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiisH~~~  151 (566)
                      ++++.+|++...++++.+||||||||++||+||+.+|++|||||||++||+.+++.+.++|++++++ |+|||++||+++
T Consensus       119 ~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~  198 (239)
T cd03296         119 ELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE  198 (239)
T ss_pred             HHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            9999999998889999999999999999999999999999999999999999999999999999765 899999999999


Q ss_pred             HHHhhcCEEEEEeCCEEEEecChhHHH
Q psy7366         152 ECEALCTKLTIMVNGQFTCLGSATHLK  178 (566)
Q Consensus       152 ~~~~~~d~i~vl~~G~i~~~g~~~~~~  178 (566)
                      ++..+||||++|++|+++..|+++++.
T Consensus       199 ~~~~~~d~i~~l~~G~i~~~~~~~~~~  225 (239)
T cd03296         199 EALEVADRVVVMNKGRIEQVGTPDEVY  225 (239)
T ss_pred             HHHHhCCEEEEEECCeEEEecCHHHHh
Confidence            999999999999999999999888764

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1e-33  Score=272.02  Aligned_cols=175  Identities=23%  Similarity=0.340  Sum_probs=153.7

Q ss_pred             CCcchHHHHHhccccCCCc---cCCCCC-------cccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQK---VPGSNP-------TIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTI   70 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~---~~~~~~-------~~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~   70 (566)
                      +||||++|+|.|++.|++.   +.+...       .....+++|||||||..||+.+||+-|+.|+....      ....
T Consensus        35 sGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG~~~~------~~~~  108 (352)
T COG4148          35 SGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKS------MRAQ  108 (352)
T ss_pred             CChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhhhhccc------chHh
Confidence            5999999999999999882   222111       11123568999999999999999999999876433      3445


Q ss_pred             HHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEecCC
Q psy7366          71 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHN  149 (566)
Q Consensus        71 ~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiisH~  149 (566)
                      ..++.+.+|++++++|++.+|||||||||+|+|||+..|++|+||||.++||...++++.-+|.+|.++ ..-|+++||-
T Consensus       109 fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS  188 (352)
T COG4148         109 FDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHS  188 (352)
T ss_pred             HHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecC
Confidence            678889999999999999999999999999999999999999999999999999999999999999776 7889999999


Q ss_pred             hhHHHhhcCEEEEEeCCEEEEecChhHHHhhc
Q psy7366         150 MEECEALCTKLTIMVNGQFTCLGSATHLKSKS  181 (566)
Q Consensus       150 ~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~~~  181 (566)
                      ++|+.++||+|++|++|++...|..+++....
T Consensus       189 ~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~  220 (352)
T COG4148         189 LDEVLRLADRVVVLENGKVKASGPLEEVWGSP  220 (352)
T ss_pred             HHHHHhhhheEEEecCCeEEecCcHHHHhcCc
Confidence            99999999999999999999999999986653

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=100.00  E-value=6.8e-33  Score=273.68  Aligned_cols=178  Identities=28%  Similarity=0.399  Sum_probs=152.0

Q ss_pred             CCcchHHHHHhccccCCCc---cCCCCCcc---cc-cccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQK---VPGSNPTI---DK-NLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNE   73 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~---~~~~~~~~---~~-~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~   73 (566)
                      .||||++|+++|++.+...   +.+.....   .. ....++|+||++.+++.+||.||+.+.....+....+..+++.+
T Consensus        37 sGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~  116 (232)
T cd03218          37 AGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEE  116 (232)
T ss_pred             CCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence            5999999999999876541   22221111   11 12469999999999999999999988655444444455677889


Q ss_pred             HHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHH
Q psy7366          74 SLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEEC  153 (566)
Q Consensus        74 ~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~  153 (566)
                      +++.+|++...++.+.+||||||||++||+||+.+|++|||||||++||+.+++++.++|++++++|.|||++||+++++
T Consensus       117 ~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~  196 (232)
T cd03218         117 LLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRET  196 (232)
T ss_pred             HHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence            99999999888999999999999999999999999999999999999999999999999999877799999999999999


Q ss_pred             HhhcCEEEEEeCCEEEEecChhHHH
Q psy7366         154 EALCTKLTIMVNGQFTCLGSATHLK  178 (566)
Q Consensus       154 ~~~~d~i~vl~~G~i~~~g~~~~~~  178 (566)
                      .++||+|++|++|+++..|+.+++.
T Consensus       197 ~~~~d~i~~l~~G~i~~~~~~~~~~  221 (232)
T cd03218         197 LSITDRAYIIYEGKVLAEGTPEEIA  221 (232)
T ss_pred             HHhCCEEEEEECCeEEEEeCHHHhh
Confidence            9999999999999999998887653

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.1e-33  Score=283.06  Aligned_cols=178  Identities=25%  Similarity=0.349  Sum_probs=153.6

Q ss_pred             CCcchHHHHHhccccCCCc---cCCCCCc-------ccccccceeEEcCCC--CCCCCCCHHHHHHHHHHhcCCChhhHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQK---VPGSNPT-------IDKNLSYIGYCPQFD--ALNDRLTPREHLEFYSRVRNVPSVLLN   68 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~---~~~~~~~-------~~~~~~~ig~v~Q~~--~l~~~~tv~e~l~~~~~~~~~~~~~~~   68 (566)
                      .||||++|+++|++.+...   +.+....       .......||||+|+|  .++. .||.||+.|.....+.+..+..
T Consensus        43 sGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~~~~~~~~~  121 (288)
T PRK13643         43 SGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNFGIPKEKAE  121 (288)
T ss_pred             ChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHcCCCHHHHH
Confidence            5999999999999977652   3332211       012245799999998  4554 6999999998776677777778


Q ss_pred             HHHHHHHHHcCCC-cccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEec
Q psy7366          69 TIVNESLNKFALG-HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTS  147 (566)
Q Consensus        69 ~~~~~~l~~~gl~-~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiis  147 (566)
                      +++.++++.+||. ...++++.+||||||||++||+||+.+|++|||||||++||+.++..+.++|++++++|.|||++|
T Consensus       122 ~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vt  201 (288)
T PRK13643        122 KIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVT  201 (288)
T ss_pred             HHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence            8899999999996 467999999999999999999999999999999999999999999999999999987799999999


Q ss_pred             CChhHHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy7366         148 HNMEECEALCTKLTIMVNGQFTCLGSATHLKS  179 (566)
Q Consensus       148 H~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~  179 (566)
                      ||++++.++||||++|++|+++..|+++++..
T Consensus       202 Hd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~  233 (288)
T PRK13643        202 HLMDDVADYADYVYLLEKGHIISCGTPSDVFQ  233 (288)
T ss_pred             cCHHHHHHhCCEEEEEECCEEEEECCHHHHHc
Confidence            99999999999999999999999999988753

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=100.00  E-value=7.7e-33  Score=279.16  Aligned_cols=179  Identities=23%  Similarity=0.330  Sum_probs=152.7

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcc---cc----cccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI---DK----NLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTI   70 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~---~~----~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~   70 (566)
                      .||||++|+++|++.+..   .+.+.....   ..    ...+|||+||++.+++.+||.||+.+.....+.+.....++
T Consensus        61 sGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~  140 (269)
T cd03294          61 SGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREER  140 (269)
T ss_pred             CCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHH
Confidence            599999999999997644   133321111   01    12469999999999999999999988765444545555677


Q ss_pred             HHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEecCC
Q psy7366          71 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHN  149 (566)
Q Consensus        71 ~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiisH~  149 (566)
                      +.++++.+||+...++.+.+||||||||++||+||+.+|++|||||||++||+.+++++.++|+++.++ |+|||++||+
T Consensus       141 ~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~  220 (269)
T cd03294         141 AAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHD  220 (269)
T ss_pred             HHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            899999999998889999999999999999999999999999999999999999999999999998654 8999999999


Q ss_pred             hhHHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy7366         150 MEECEALCTKLTIMVNGQFTCLGSATHLKS  179 (566)
Q Consensus       150 ~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~  179 (566)
                      ++++.++||+|++|++|+++..|+++++..
T Consensus       221 ~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  250 (269)
T cd03294         221 LDEALRLGDRIAIMKDGRLVQVGTPEEILT  250 (269)
T ss_pred             HHHHHHhcCEEEEEECCEEEEeCCHHHHHh
Confidence            999999999999999999999999888753

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=100.00  E-value=2.1e-33  Score=254.23  Aligned_cols=178  Identities=20%  Similarity=0.302  Sum_probs=153.6

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcc-cccccceeEEcCCCCCCCCCCHHHHHHHHHHhc-CCChhhHHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI-DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVR-NVPSVLLNTIVNESL   75 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~-~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l   75 (566)
                      .||||++++|.|...|.+   .+.+.+... ....+-|++++|+..+|.-+||.+|+.++..-. .+ ..+.+++++.++
T Consensus        36 aGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~LkL-~a~~r~~v~~aa  114 (231)
T COG3840          36 AGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKL-NAEQREKVEAAA  114 (231)
T ss_pred             ccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCccccc-CHHHHHHHHHHH
Confidence            499999999999998877   233332221 123345999999999999999999998764221 12 234567899999


Q ss_pred             HHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEecCChhHHH
Q psy7366          76 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECE  154 (566)
Q Consensus        76 ~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiisH~~~~~~  154 (566)
                      ..+||....+|.+.+|||||||||+|||+|+++-+||+||||+++|||.-|.++..++.++.++ +.|+++|||.++++.
T Consensus       115 ~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~  194 (231)
T COG3840         115 AQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAA  194 (231)
T ss_pred             HHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999654 899999999999999


Q ss_pred             hhcCEEEEEeCCEEEEecChhHHHh
Q psy7366         155 ALCTKLTIMVNGQFTCLGSATHLKS  179 (566)
Q Consensus       155 ~~~d~i~vl~~G~i~~~g~~~~~~~  179 (566)
                      .++||++++++|+|.+.|+.+++..
T Consensus       195 ~ia~~~~fl~~Gri~~~g~~~~~~~  219 (231)
T COG3840         195 RIADRVVFLDNGRIAAQGSTQELLS  219 (231)
T ss_pred             HhhhceEEEeCCEEEeeccHHHHhc
Confidence            9999999999999999999988764

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=100.00  E-value=7.6e-33  Score=269.18  Aligned_cols=171  Identities=27%  Similarity=0.487  Sum_probs=147.8

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNK   77 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~   77 (566)
                      .||||++|+++|++.+..   .+.+.... ......++|++|++.+++.+|+.||+.+....++.+..+..+++.++++.
T Consensus        37 sGKSTLl~~l~G~~~~~~G~i~~~g~~~~-~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~  115 (210)
T cd03269          37 AGKTTTIRMILGIILPDSGEVLFDGKPLD-IAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLER  115 (210)
T ss_pred             CCHHHHHHHHhCCCCCCceEEEECCCchh-HHHHccEEEeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence            599999999999986654   12232211 12235799999999999999999999887655555555667788999999


Q ss_pred             cCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHHhhc
Q psy7366          78 FALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALC  157 (566)
Q Consensus        78 ~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~~~  157 (566)
                      +|++...++++.+||||||||++||+||+.+|++|||||||++||+.+++++.++|++++++|+|||++||+++++.++|
T Consensus       116 ~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~  195 (210)
T cd03269         116 LELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELC  195 (210)
T ss_pred             cCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhh
Confidence            99998889999999999999999999999999999999999999999999999999998777999999999999999999


Q ss_pred             CEEEEEeCCEEEEec
Q psy7366         158 TKLTIMVNGQFTCLG  172 (566)
Q Consensus       158 d~i~vl~~G~i~~~g  172 (566)
                      |++++|++|+++..|
T Consensus       196 d~i~~l~~g~i~~~~  210 (210)
T cd03269         196 DRVLLLNKGRAVLYG  210 (210)
T ss_pred             hEEEEEeCCEEEecC
Confidence            999999999998643

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6.2e-33  Score=282.68  Aligned_cols=178  Identities=24%  Similarity=0.301  Sum_probs=152.3

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCc-------ccccccceeEEcCCC--CCCCCCCHHHHHHHHHHhcCCChhhHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPT-------IDKNLSYIGYCPQFD--ALNDRLTPREHLEFYSRVRNVPSVLLN   68 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~-------~~~~~~~ig~v~Q~~--~l~~~~tv~e~l~~~~~~~~~~~~~~~   68 (566)
                      .||||++|+++|++.++.   .+.+....       .......||||||+|  .++ ..||.||+.|.....+.+..+..
T Consensus        44 sGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~~~~~~~~~  122 (290)
T PRK13634         44 SGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNFGVSEEDAK  122 (290)
T ss_pred             CcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHcCCCHHHHH
Confidence            499999999999998765   23332211       012235799999998  344 57999999988766666777777


Q ss_pred             HHHHHHHHHcCCC-cccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEe
Q psy7366          69 TIVNESLNKFALG-HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILT  146 (566)
Q Consensus        69 ~~~~~~l~~~gl~-~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviii  146 (566)
                      +++.++++.+||. ...++++.+||||||||++||+||+.+|++|||||||++||+.++.++.++|++++++ |.|||++
T Consensus       123 ~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviii  202 (290)
T PRK13634        123 QKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLV  202 (290)
T ss_pred             HHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence            8899999999997 5679999999999999999999999999999999999999999999999999999664 9999999


Q ss_pred             cCChhHHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy7366         147 SHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  179 (566)
Q Consensus       147 sH~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~  179 (566)
                      |||++++..+||||++|++|++++.|+++++..
T Consensus       203 tHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  235 (290)
T PRK13634        203 THSMEDAARYADQIVVMHKGTVFLQGTPREIFA  235 (290)
T ss_pred             eCCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence            999999999999999999999999999888653

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=100.00  E-value=1e-32  Score=285.18  Aligned_cols=180  Identities=22%  Similarity=0.255  Sum_probs=153.4

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCccc------ccccceeEEcCCC--CCCCCCCHHHHHHHHHHhc--CCChhhH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTID------KNLSYIGYCPQFD--ALNDRLTPREHLEFYSRVR--NVPSVLL   67 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~~------~~~~~ig~v~Q~~--~l~~~~tv~e~l~~~~~~~--~~~~~~~   67 (566)
                      .||||++|+|+|++.+..   .+.+......      .....|+||+|+|  .+++.+||.||+.+.....  +++..+.
T Consensus        58 sGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~  137 (331)
T PRK15079         58 CGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEV  137 (331)
T ss_pred             CCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHH
Confidence            599999999999987644   1223221110      1234799999998  5788999999998865443  3566677


Q ss_pred             HHHHHHHHHHcCCC-cccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEE
Q psy7366          68 NTIVNESLNKFALG-HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVIL  145 (566)
Q Consensus        68 ~~~~~~~l~~~gl~-~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tvii  145 (566)
                      .+++.++++.+|+. ...++++.+|||||+||++||+||+.+|++||+||||++||+.++.++.++|++++++ |.|||+
T Consensus       138 ~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~  217 (331)
T PRK15079        138 KDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIF  217 (331)
T ss_pred             HHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence            78899999999995 4679999999999999999999999999999999999999999999999999999765 999999


Q ss_pred             ecCChhHHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy7366         146 TSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK  180 (566)
Q Consensus       146 isH~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~~  180 (566)
                      ||||++++.++||||++|++|++++.|+++++...
T Consensus       218 iTHdl~~~~~~~dri~vl~~G~ive~g~~~~i~~~  252 (331)
T PRK15079        218 IAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHN  252 (331)
T ss_pred             EeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcC
Confidence            99999999999999999999999999999887653

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=100.00  E-value=8.3e-33  Score=269.48  Aligned_cols=172  Identities=25%  Similarity=0.375  Sum_probs=146.9

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcc-cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI-DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLN   76 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~-~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~   76 (566)
                      .||||++|+++|++.+..   .+.+..... ......|+|+||++.+++..|+.||+.+.....+....+..+++.++++
T Consensus        37 sGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~  116 (213)
T cd03301          37 CGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAE  116 (213)
T ss_pred             CCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            599999999999986544   122221111 1123469999999999989999999988755555555566678899999


Q ss_pred             HcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEecCChhHHHh
Q psy7366          77 KFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEA  155 (566)
Q Consensus        77 ~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiisH~~~~~~~  155 (566)
                      .+|++...++++.+||||||||++||+||+.+|++|||||||++||+.+++++.++|++++++ |.|||++||+++++.+
T Consensus       117 ~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~  196 (213)
T cd03301         117 LLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMT  196 (213)
T ss_pred             HcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence            999998889999999999999999999999999999999999999999999999999998764 8999999999999999


Q ss_pred             hcCEEEEEeCCEEEEec
Q psy7366         156 LCTKLTIMVNGQFTCLG  172 (566)
Q Consensus       156 ~~d~i~vl~~G~i~~~g  172 (566)
                      +||+|++|++|++++.|
T Consensus       197 ~~d~i~~l~~g~~~~~g  213 (213)
T cd03301         197 MADRIAVMNDGQIQQIG  213 (213)
T ss_pred             hcCeEEEEECCEEEecC
Confidence            99999999999998764

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.5e-33  Score=264.63  Aligned_cols=179  Identities=21%  Similarity=0.249  Sum_probs=154.1

Q ss_pred             CCcchHHHHHhccccCCC-ccCCCC--Cccc------ccccceeEEcCCCCCCCCCCHHHHHHHH--------HHhcCCC
Q psy7366           1 MGLTTTPKRVVTLLLTTQ-KVPGSN--PTID------KNLSYIGYCPQFDALNDRLTPREHLEFY--------SRVRNVP   63 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~-~~~~~~--~~~~------~~~~~ig~v~Q~~~l~~~~tv~e~l~~~--------~~~~~~~   63 (566)
                      .||||++|++++++-++. .+...+  ....      ..+..|||++|.+.|.+.+||.+|+..+        ....++.
T Consensus        41 aGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglf  120 (258)
T COG3638          41 AGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLF  120 (258)
T ss_pred             CcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCC
Confidence            599999999999776655 122211  1111      1245799999999999999999999754        2334566


Q ss_pred             hhhHHHHHHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHh-CCCE
Q psy7366          64 SVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS-EGRC  142 (566)
Q Consensus        64 ~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~t  142 (566)
                      ..+-+.++-+.|+++|+.+...++.++|||||+|||+|||||+.+|+++|-|||+++|||.+.+.+.+.|+++.+ .|.|
T Consensus       121 sk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~T  200 (258)
T COG3638         121 SKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGIT  200 (258)
T ss_pred             CHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCE
Confidence            667778899999999999999999999999999999999999999999999999999999999999999999965 5999


Q ss_pred             EEEecCChhHHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy7366         143 VILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  179 (566)
Q Consensus       143 viiisH~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~  179 (566)
                      ||+.-|+++.+.++||||+-|++|+|+++|+++++.+
T Consensus       201 vi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~el~~  237 (258)
T COG3638         201 VIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELTD  237 (258)
T ss_pred             EEEEechHHHHHHHHhhheEecCCcEEEeCChhhhhH
Confidence            9999999999999999999999999999999988643

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=9.8e-33  Score=279.06  Aligned_cols=177  Identities=21%  Similarity=0.283  Sum_probs=151.3

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcc---cccccceeEEcCCCC-CCCCCCHHHHHHHHHHhcCCChhhHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI---DKNLSYIGYCPQFDA-LNDRLTPREHLEFYSRVRNVPSVLLNTIVNE   73 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~---~~~~~~ig~v~Q~~~-l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~   73 (566)
                      .||||++|+++|++.|.+   .+.+.....   ......|||+||+|. .+...||.||+.|+....+.+.....+++.+
T Consensus        42 sGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~  121 (274)
T PRK13647         42 AGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEE  121 (274)
T ss_pred             CcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHH
Confidence            599999999999987655   233322111   112356999999984 4456899999998765555666666778999


Q ss_pred             HHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHH
Q psy7366          74 SLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEEC  153 (566)
Q Consensus        74 ~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~  153 (566)
                      +++.+||....++++.+||||||||++||+||+.+|++|||||||++||+.++.++.++|++++++|.|||++||+++++
T Consensus       122 ~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~  201 (274)
T PRK13647        122 ALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLA  201 (274)
T ss_pred             HHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence            99999999888999999999999999999999999999999999999999999999999999977799999999999999


Q ss_pred             HhhcCEEEEEeCCEEEEecChhHH
Q psy7366         154 EALCTKLTIMVNGQFTCLGSATHL  177 (566)
Q Consensus       154 ~~~~d~i~vl~~G~i~~~g~~~~~  177 (566)
                      .++||||++|++|++++.|+++++
T Consensus       202 ~~~~d~i~~l~~G~i~~~g~~~~~  225 (274)
T PRK13647        202 AEWADQVIVLKEGRVLAEGDKSLL  225 (274)
T ss_pred             HHhCCEEEEEECCEEEEECCHHHh
Confidence            999999999999999999998764

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=100.00  E-value=1.2e-32  Score=268.09  Aligned_cols=171  Identities=30%  Similarity=0.535  Sum_probs=146.2

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcc--cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI--DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL   75 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~--~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l   75 (566)
                      .||||++|+++|++.+.+   .+.+.....  ......++|++|++.+++.+||.||+.+.....+.+..+..+++.+++
T Consensus        36 sGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l  115 (211)
T cd03264          36 AGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVL  115 (211)
T ss_pred             CCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            599999999999987654   122222111  122357999999999999999999998876555555555667889999


Q ss_pred             HHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHHh
Q psy7366          76 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEA  155 (566)
Q Consensus        76 ~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~  155 (566)
                      +.+|++...++++.+||||||||++||+||+.+|++|||||||++||+.+++++.++|+++++ +.|||++||+++++.+
T Consensus       116 ~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~~~~  194 (211)
T cd03264         116 ELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVEDVES  194 (211)
T ss_pred             HHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHHHH
Confidence            999998888999999999999999999999999999999999999999999999999999865 5899999999999999


Q ss_pred             hcCEEEEEeCCEEEEec
Q psy7366         156 LCTKLTIMVNGQFTCLG  172 (566)
Q Consensus       156 ~~d~i~vl~~G~i~~~g  172 (566)
                      +|||+++|++|+++..|
T Consensus       195 ~~d~i~~l~~g~i~~~g  211 (211)
T cd03264         195 LCNQVAVLNKGKLVFEG  211 (211)
T ss_pred             hCCEEEEEECCEEEecC
Confidence            99999999999998654

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=100.00  E-value=1.9e-32  Score=272.23  Aligned_cols=178  Identities=28%  Similarity=0.435  Sum_probs=151.8

Q ss_pred             CCcchHHHHHhccccCCCc---cCCCCCcc---cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQK---VPGSNPTI---DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNES   74 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~---~~~~~~~~---~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~   74 (566)
                      .||||++|++.|++.+...   +.+.....   ......++|+||++.+++.+||.||+.+.....+.+..+..+++.++
T Consensus        38 sGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~  117 (242)
T cd03295          38 SGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADEL  117 (242)
T ss_pred             CCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            5999999999999876541   22221110   11234799999999999999999999887655455545566788999


Q ss_pred             HHHcCCCc--ccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEecCChh
Q psy7366          75 LNKFALGH--YSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNME  151 (566)
Q Consensus        75 l~~~gl~~--~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiisH~~~  151 (566)
                      ++.+|+..  ..++++.+||||||||++||+||+.+|++|||||||++||+.+++++.++|++++++ |+|||++||+++
T Consensus       118 l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~  197 (242)
T cd03295         118 LALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID  197 (242)
T ss_pred             HHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH
Confidence            99999986  789999999999999999999999999999999999999999999999999998765 899999999999


Q ss_pred             HHHhhcCEEEEEeCCEEEEecChhHHH
Q psy7366         152 ECEALCTKLTIMVNGQFTCLGSATHLK  178 (566)
Q Consensus       152 ~~~~~~d~i~vl~~G~i~~~g~~~~~~  178 (566)
                      ++.++||+|++|++|+++..|+++++.
T Consensus       198 ~~~~~~d~i~~l~~G~i~~~~~~~~~~  224 (242)
T cd03295         198 EAFRLADRIAIMKNGEIVQVGTPDEIL  224 (242)
T ss_pred             HHHHhCCEEEEEECCEEEEecCHHHHH
Confidence            999999999999999999999887764

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=100.00  E-value=7.6e-33  Score=270.73  Aligned_cols=167  Identities=23%  Similarity=0.305  Sum_probs=142.1

Q ss_pred             CCcchHHHHHhccccCCCc---cCCCCCcccc-------cccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQK---VPGSNPTIDK-------NLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTI   70 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~---~~~~~~~~~~-------~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~   70 (566)
                      .||||++|+++|++.+.+.   +.+.......       ....|+|++|++.+++.+||+||+.+.....+.+.....++
T Consensus        41 sGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~  120 (218)
T cd03255          41 SGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRER  120 (218)
T ss_pred             CCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence            5999999999999876541   2222211100       12469999999999999999999998765555544455678


Q ss_pred             HHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEecCC
Q psy7366          71 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS-EGRCVILTSHN  149 (566)
Q Consensus        71 ~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviiisH~  149 (566)
                      +.++++.+|++...++.+.+||||||||++||+||+.+|++|||||||++||+.+++++.++|+++++ .|+|||++||+
T Consensus       121 ~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~  200 (218)
T cd03255         121 AEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHD  200 (218)
T ss_pred             HHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence            89999999999888999999999999999999999999999999999999999999999999999976 59999999999


Q ss_pred             hhHHHhhcCEEEEEeCCEE
Q psy7366         150 MEECEALCTKLTIMVNGQF  168 (566)
Q Consensus       150 ~~~~~~~~d~i~vl~~G~i  168 (566)
                      ++++. +||+|++|++|++
T Consensus       201 ~~~~~-~~d~v~~l~~G~i  218 (218)
T cd03255         201 PELAE-YADRIIELRDGKI  218 (218)
T ss_pred             HHHHh-hhcEEEEeeCCcC
Confidence            99997 9999999999974

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.3e-32  Score=279.91  Aligned_cols=178  Identities=23%  Similarity=0.308  Sum_probs=151.7

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcc-------cccccceeEEcCCCC--CCCCCCHHHHHHHHHHhcCCChhhHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI-------DKNLSYIGYCPQFDA--LNDRLTPREHLEFYSRVRNVPSVLLN   68 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~-------~~~~~~ig~v~Q~~~--l~~~~tv~e~l~~~~~~~~~~~~~~~   68 (566)
                      .||||++|+|+|++.|.+   .+.+.....       ......|||+||+|.  ++ .+||.||+.+.....+....+..
T Consensus        44 aGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~  122 (287)
T PRK13641         44 SGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFGFSEDEAK  122 (287)
T ss_pred             CCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHcCCCHHHHH
Confidence            599999999999998765   233322110       112347999999983  44 57999999886655555556667


Q ss_pred             HHHHHHHHHcCCC-cccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEec
Q psy7366          69 TIVNESLNKFALG-HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTS  147 (566)
Q Consensus        69 ~~~~~~l~~~gl~-~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiis  147 (566)
                      +++.++++.+||+ ...++++.+||||||||++||+||+.+|++|||||||++||+.+++++.++|+++++.|.|||++|
T Consensus       123 ~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivs  202 (287)
T PRK13641        123 EKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVT  202 (287)
T ss_pred             HHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence            7899999999997 678999999999999999999999999999999999999999999999999999977799999999


Q ss_pred             CChhHHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy7366         148 HNMEECEALCTKLTIMVNGQFTCLGSATHLKS  179 (566)
Q Consensus       148 H~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~  179 (566)
                      |+++++.++||||++|++|+++..|+++++..
T Consensus       203 H~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  234 (287)
T PRK13641        203 HNMDDVAEYADDVLVLEHGKLIKHASPKEIFS  234 (287)
T ss_pred             CCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            99999999999999999999999999887653

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=100.00  E-value=1.4e-32  Score=269.33  Aligned_cols=176  Identities=45%  Similarity=0.769  Sum_probs=150.9

Q ss_pred             CCcchHHHHHhccccCCCc---cCCCCCcc--cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQK---VPGSNPTI--DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL   75 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~---~~~~~~~~--~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l   75 (566)
                      .||||++|+++|++.+...   +.+.....  ......+||++|++.+++.+|+.||+.+.....+.+..+..+++.+++
T Consensus        39 sGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l  118 (220)
T cd03263          39 AGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLL  118 (220)
T ss_pred             CCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            5999999999999876541   22222111  122356999999999998999999999876665555555667889999


Q ss_pred             HHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHHh
Q psy7366          76 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEA  155 (566)
Q Consensus        76 ~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~  155 (566)
                      +.+||....++++.+||+|||||++||+||+.+|++|||||||++||+.+++++.++|+++++ +.|||++||+++++.+
T Consensus       119 ~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~  197 (220)
T cd03263         119 RVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMDEAEA  197 (220)
T ss_pred             HHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHH
Confidence            999998888999999999999999999999999999999999999999999999999999865 6999999999999999


Q ss_pred             hcCEEEEEeCCEEEEecChhHH
Q psy7366         156 LCTKLTIMVNGQFTCLGSATHL  177 (566)
Q Consensus       156 ~~d~i~vl~~G~i~~~g~~~~~  177 (566)
                      +||+|++|++|+++..|+++++
T Consensus       198 ~~d~i~~l~~g~i~~~~~~~~~  219 (220)
T cd03263         198 LCDRIAIMSDGKLRCIGSPQEL  219 (220)
T ss_pred             hcCEEEEEECCEEEecCCHHHc
Confidence            9999999999999998887653

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=100.00  E-value=1.3e-32  Score=273.18  Aligned_cols=178  Identities=22%  Similarity=0.269  Sum_probs=148.4

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcc------cccccceeEEcCCCCCCCCCCHHHHHHHHHHh--------cCCC
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI------DKNLSYIGYCPQFDALNDRLTPREHLEFYSRV--------RNVP   63 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~------~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~--------~~~~   63 (566)
                      .||||++|+++|++.+.+   .+.+.....      ......|+|+||++.+++.+||.||+.+....        .+..
T Consensus        38 sGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~  117 (241)
T cd03256          38 AGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLF  117 (241)
T ss_pred             CCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccC
Confidence            599999999999986544   122322111      11235699999999999999999999865321        1122


Q ss_pred             hhhHHHHHHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCE
Q psy7366          64 SVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRC  142 (566)
Q Consensus        64 ~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~t  142 (566)
                      .....+++.++++.+|+....++++.+||||||||++||+||+.+|+||||||||++||+.+++.+.++|++++++ |+|
T Consensus       118 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~t  197 (241)
T cd03256         118 PKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGIT  197 (241)
T ss_pred             cHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCE
Confidence            2334567889999999988889999999999999999999999999999999999999999999999999998764 999


Q ss_pred             EEEecCChhHHHhhcCEEEEEeCCEEEEecChhHHH
Q psy7366         143 VILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  178 (566)
Q Consensus       143 viiisH~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~  178 (566)
                      ||++||+++++..+||+|++|++|+++..|+++++.
T Consensus       198 ii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~  233 (241)
T cd03256         198 VIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELT  233 (241)
T ss_pred             EEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHhh
Confidence            999999999999999999999999999999888763

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=1.7e-32  Score=272.23  Aligned_cols=178  Identities=25%  Similarity=0.282  Sum_probs=151.8

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcc-----cccccceeEEcCCCCCCCCCCHHHHHHHHHH-hcCCChhhHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI-----DKNLSYIGYCPQFDALNDRLTPREHLEFYSR-VRNVPSVLLNTIV   71 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~-----~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~-~~~~~~~~~~~~~   71 (566)
                      .||||++|+++|++.+.+   .+.+.....     ....++++|++|++.+++.+||.||+.+... ..+.+..+..+++
T Consensus        38 sGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~  117 (240)
T PRK09493         38 SGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQA  117 (240)
T ss_pred             CCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHH
Confidence            599999999999987554   122221111     1123579999999999999999999987542 2344455566788


Q ss_pred             HHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChh
Q psy7366          72 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME  151 (566)
Q Consensus        72 ~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~  151 (566)
                      .++++.+|++...++++.+||||||||++||+||+.+|++|||||||++||+.+++++.++|++++++|+|||++||+++
T Consensus       118 ~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~  197 (240)
T PRK09493        118 RELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG  197 (240)
T ss_pred             HHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            99999999988889999999999999999999999999999999999999999999999999999777999999999999


Q ss_pred             HHHhhcCEEEEEeCCEEEEecChhHHH
Q psy7366         152 ECEALCTKLTIMVNGQFTCLGSATHLK  178 (566)
Q Consensus       152 ~~~~~~d~i~vl~~G~i~~~g~~~~~~  178 (566)
                      ++..+||||++|++|++++.|+++++.
T Consensus       198 ~~~~~~d~i~~l~~G~i~~~g~~~~~~  224 (240)
T PRK09493        198 FAEKVASRLIFIDKGRIAEDGDPQVLI  224 (240)
T ss_pred             HHHHhCCEEEEEECCEEEeeCCHHHHh
Confidence            999999999999999999999888764

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=100.00  E-value=1.2e-32  Score=289.89  Aligned_cols=178  Identities=21%  Similarity=0.369  Sum_probs=152.0

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcc---cccccceeEEcCCCCCCCCCCHHHHHHHHHHhc--CCC--hhhHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI---DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVR--NVP--SVLLNTI   70 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~---~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~--~~~--~~~~~~~   70 (566)
                      .||||++|+++|++.+.+   .+.+.....   ....++||||+|++.+++.+||.||+.++...+  .+.  .....++
T Consensus        40 aGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~  119 (402)
T PRK09536         40 AGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAA  119 (402)
T ss_pred             chHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHH
Confidence            599999999999987655   233322111   122457999999999999999999998764321  111  2344578


Q ss_pred             HHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCCh
Q psy7366          71 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM  150 (566)
Q Consensus        71 ~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~  150 (566)
                      ++++++.+|+....++++.+||||||||++||+||+++|++|||||||++||+.++.+++++|++++++|+|||++||++
T Consensus       120 v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl  199 (402)
T PRK09536        120 VERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDL  199 (402)
T ss_pred             HHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCH
Confidence            89999999999999999999999999999999999999999999999999999999999999999987799999999999


Q ss_pred             hHHHhhcCEEEEEeCCEEEEecChhHHH
Q psy7366         151 EECEALCTKLTIMVNGQFTCLGSATHLK  178 (566)
Q Consensus       151 ~~~~~~~d~i~vl~~G~i~~~g~~~~~~  178 (566)
                      +++.++|||+++|++|+++..|+++++.
T Consensus       200 ~~~~~~adrii~l~~G~iv~~G~~~ev~  227 (402)
T PRK09536        200 DLAARYCDELVLLADGRVRAAGPPADVL  227 (402)
T ss_pred             HHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence            9999999999999999999999998864

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=5.9e-33  Score=264.32  Aligned_cols=179  Identities=24%  Similarity=0.323  Sum_probs=156.5

Q ss_pred             CCcchHHHHHhccccCCC--------ccCCCCCcccccccceeEEcCCCCCCCCCCHHHHHHHHHHhc-------CC---
Q psy7366           1 MGLTTTPKRVVTLLLTTQ--------KVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVR-------NV---   62 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~--------~~~~~~~~~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~-------~~---   62 (566)
                      .||||++++|+|.+.|+.        .+++.++. ...+.+|+--||.+.+|++|||.||+..+...+       +.   
T Consensus        41 AGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~-~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~  119 (250)
T COG0411          41 AGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPH-RIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRA  119 (250)
T ss_pred             CCceeeeeeecccccCCCceEEECCcccCCCCHH-HHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccc
Confidence            499999999999998876        23332222 123567999999999999999999998764422       11   


Q ss_pred             --ChhhHHHHHHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-
Q psy7366          63 --PSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-  139 (566)
Q Consensus        63 --~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-  139 (566)
                        ...+..+++.++|+.+||.+..+++.++||+|||+|++||+||+.+|++|+||||.+||.|...+++.++|+++++. 
T Consensus       120 ~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~  199 (250)
T COG0411         120 RKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRG  199 (250)
T ss_pred             hhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcC
Confidence              24567789999999999999999999999999999999999999999999999999999999999999999999874 


Q ss_pred             CCEEEEecCChhHHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy7366         140 GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK  180 (566)
Q Consensus       140 g~tviiisH~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~~  180 (566)
                      |.||++|+|||+.+..+||||+||+.|+++++|+|+++..+
T Consensus       200 g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~~d  240 (250)
T COG0411         200 GVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRNN  240 (250)
T ss_pred             CcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHHhcC
Confidence            79999999999999999999999999999999999998654

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=100.00  E-value=2.5e-32  Score=272.79  Aligned_cols=178  Identities=25%  Similarity=0.258  Sum_probs=150.6

Q ss_pred             CCcchHHHHHhccccCCCc---cCCCCCc-----------ccccccceeEEcCCCCCCCCCCHHHHHHHHHH-hcCCChh
Q psy7366           1 MGLTTTPKRVVTLLLTTQK---VPGSNPT-----------IDKNLSYIGYCPQFDALNDRLTPREHLEFYSR-VRNVPSV   65 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~---~~~~~~~-----------~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~-~~~~~~~   65 (566)
                      .||||++|++.|++.+...   +.+....           .......++|+||++.+++.+|+.||+.++.. ..+.+..
T Consensus        40 sGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~  119 (250)
T PRK11264         40 SGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKE  119 (250)
T ss_pred             CCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHH
Confidence            5999999999999865431   2221110           01123479999999999999999999987543 2334444


Q ss_pred             hHHHHHHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Q psy7366          66 LLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL  145 (566)
Q Consensus        66 ~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii  145 (566)
                      ...+++.++++.+|+....++++.+||||||||++||+||+.+|++|||||||++||+.+++++.++|++++++|.|||+
T Consensus       120 ~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~  199 (250)
T PRK11264        120 EATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVI  199 (250)
T ss_pred             HHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence            55677889999999998889999999999999999999999999999999999999999999999999999777999999


Q ss_pred             ecCChhHHHhhcCEEEEEeCCEEEEecChhHHH
Q psy7366         146 TSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  178 (566)
Q Consensus       146 isH~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~  178 (566)
                      +||+++++.++||||++|++|+++..|+++++.
T Consensus       200 ~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  232 (250)
T PRK11264        200 VTHEMSFARDVADRAIFMDQGRIVEQGPAKALF  232 (250)
T ss_pred             EeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence            999999999999999999999999999988764

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.7e-32  Score=278.02  Aligned_cols=178  Identities=28%  Similarity=0.324  Sum_probs=153.0

Q ss_pred             CCcchHHHHHhccccCCCc---cCCCCCcc---cccccceeEEcCCCC-CCCCCCHHHHHHHHHHhcCCChhhHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQK---VPGSNPTI---DKNLSYIGYCPQFDA-LNDRLTPREHLEFYSRVRNVPSVLLNTIVNE   73 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~---~~~~~~~~---~~~~~~ig~v~Q~~~-l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~   73 (566)
                      .||||++|+++|++.|.+.   +.+.....   ....+.|||++|+|. +++.+||.||+.|.....+.+..+..+++.+
T Consensus        44 sGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~  123 (279)
T PRK13650         44 SGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNE  123 (279)
T ss_pred             CCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHH
Confidence            5999999999999876652   22221111   122357999999984 6677899999998766566667677788999


Q ss_pred             HHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEecCChhH
Q psy7366          74 SLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEE  152 (566)
Q Consensus        74 ~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiisH~~~~  152 (566)
                      +++.+||+...++.+.+||||||||++||+||+.+|++|||||||++||+.+++.+.++|++++++ |+|||++||++++
T Consensus       124 ~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~  203 (279)
T PRK13650        124 ALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDE  203 (279)
T ss_pred             HHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence            999999998889999999999999999999999999999999999999999999999999999765 9999999999999


Q ss_pred             HHhhcCEEEEEeCCEEEEecChhHHHh
Q psy7366         153 CEALCTKLTIMVNGQFTCLGSATHLKS  179 (566)
Q Consensus       153 ~~~~~d~i~vl~~G~i~~~g~~~~~~~  179 (566)
                      +. .||||++|++|+++..|+++++..
T Consensus       204 ~~-~~dri~~l~~G~i~~~g~~~~~~~  229 (279)
T PRK13650        204 VA-LSDRVLVMKNGQVESTSTPRELFS  229 (279)
T ss_pred             HH-hCCEEEEEECCEEEEECCHHHHHc
Confidence            95 799999999999999999988754

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.6e-32  Score=272.27  Aligned_cols=180  Identities=20%  Similarity=0.257  Sum_probs=153.2

Q ss_pred             CCcchHHHHHhcccc-C-CCccC------CCCC---ccc----ccccceeEEcCCC--CCCCCCCHHHHHHHHHHhc-CC
Q psy7366           1 MGLTTTPKRVVTLLL-T-TQKVP------GSNP---TID----KNLSYIGYCPQFD--ALNDRLTPREHLEFYSRVR-NV   62 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~-~-~~~~~------~~~~---~~~----~~~~~ig~v~Q~~--~l~~~~tv~e~l~~~~~~~-~~   62 (566)
                      +|||||.++|++++- + +....      +.+.   ..+    -+.+.|+|+||+|  .|.|-+||.+.+.-..... +.
T Consensus        42 sGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~  121 (316)
T COG0444          42 SGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKG  121 (316)
T ss_pred             CCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcc
Confidence            599999999999996 3 33222      2111   111    1345799999998  6778899999997665543 33


Q ss_pred             -ChhhHHHHHHHHHHHcCCCc---ccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHh
Q psy7366          63 -PSVLLNTIVNESLNKFALGH---YSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS  138 (566)
Q Consensus        63 -~~~~~~~~~~~~l~~~gl~~---~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~  138 (566)
                       ...+..+++.++|+.+||+.   ..+.++.+|||||+|||.||.||+.+|++||.||||++||...+.++.++|+++++
T Consensus       122 ~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~  201 (316)
T COG0444         122 LSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQR  201 (316)
T ss_pred             hhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHH
Confidence             46678889999999999985   46999999999999999999999999999999999999999999999999999976


Q ss_pred             -CCCEEEEecCChhHHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy7366         139 -EGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK  180 (566)
Q Consensus       139 -~g~tviiisH~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~~  180 (566)
                       .|.|+|+||||+..+.++||||+||+.|+|++.|+++++...
T Consensus       202 e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~~~~i~~~  244 (316)
T COG0444         202 EKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIFKN  244 (316)
T ss_pred             hcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCCHHHHhcC
Confidence             599999999999999999999999999999999999998765

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=100.00  E-value=2.2e-32  Score=265.48  Aligned_cols=168  Identities=30%  Similarity=0.444  Sum_probs=143.5

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcc-cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI-DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLN   76 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~-~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~   76 (566)
                      .||||++|+++|++.+.+   .+.+..... ......++|+||++.+++.+||.||+.++....+.    ..+++.++++
T Consensus        37 sGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~----~~~~~~~~l~  112 (208)
T cd03268          37 AGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLLGI----RKKRIDEVLD  112 (208)
T ss_pred             CCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcCC----cHHHHHHHHH
Confidence            599999999999987654   232322111 12234699999999999999999999887544332    2456788999


Q ss_pred             HcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHHhh
Q psy7366          77 KFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEAL  156 (566)
Q Consensus        77 ~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~~  156 (566)
                      .+|+....++++.+||||||||++||+||+.+|++|||||||++||+.++++++++|++++++|+|||++||+++++.++
T Consensus       113 ~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~  192 (208)
T cd03268         113 VVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKV  192 (208)
T ss_pred             HcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHh
Confidence            99999888999999999999999999999999999999999999999999999999999877899999999999999999


Q ss_pred             cCEEEEEeCCEEEEec
Q psy7366         157 CTKLTIMVNGQFTCLG  172 (566)
Q Consensus       157 ~d~i~vl~~G~i~~~g  172 (566)
                      ||++++|++|+++..|
T Consensus       193 ~d~v~~l~~g~i~~~g  208 (208)
T cd03268         193 ADRIGIINKGKLIEEG  208 (208)
T ss_pred             cCEEEEEECCEEEecC
Confidence            9999999999998654

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.1e-32  Score=281.66  Aligned_cols=178  Identities=23%  Similarity=0.290  Sum_probs=151.6

Q ss_pred             CCcchHHHHHhccccCCCc---cCCCCCc-------------------ccccccceeEEcCCC--CCCCCCCHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQK---VPGSNPT-------------------IDKNLSYIGYCPQFD--ALNDRLTPREHLEFY   56 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~---~~~~~~~-------------------~~~~~~~ig~v~Q~~--~l~~~~tv~e~l~~~   56 (566)
                      .||||++|+++|++.+.+.   +.+....                   .....+.||||+|+|  .+++ .||.||+.|+
T Consensus        63 sGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~  141 (320)
T PRK13631         63 SGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFG  141 (320)
T ss_pred             CCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhh
Confidence            5999999999999977551   2221110                   012235799999998  3554 5999999887


Q ss_pred             HHhcCCChhhHHHHHHHHHHHcCCC-cccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHH
Q psy7366          57 SRVRNVPSVLLNTIVNESLNKFALG-HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER  135 (566)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~  135 (566)
                      ....+.+..+..+++.++++.+||+ ...++.+.+||||||||++||+||+.+|++|||||||++||+.+++++.++|++
T Consensus       142 ~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~  221 (320)
T PRK13631        142 PVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILD  221 (320)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHH
Confidence            6555566666777899999999997 578999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEEecCChhHHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy7366         136 AVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  179 (566)
Q Consensus       136 l~~~g~tviiisH~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~  179 (566)
                      ++++|.|||++|||++++..+||||++|++|+++..|+++++..
T Consensus       222 l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~  265 (320)
T PRK13631        222 AKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIFT  265 (320)
T ss_pred             HHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            97779999999999999999999999999999999999988754

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.9e-32  Score=278.68  Aligned_cols=178  Identities=25%  Similarity=0.322  Sum_probs=151.9

Q ss_pred             CCcchHHHHHhccccCCCc---cCCCCCcc-------cccccceeEEcCCC--CCCCCCCHHHHHHHHHHhcCCChhhHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQK---VPGSNPTI-------DKNLSYIGYCPQFD--ALNDRLTPREHLEFYSRVRNVPSVLLN   68 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~---~~~~~~~~-------~~~~~~ig~v~Q~~--~l~~~~tv~e~l~~~~~~~~~~~~~~~   68 (566)
                      .||||++|+++|++.++..   +.+.....       ......||||||+|  .+++ .||.||+.|.....+.+..+..
T Consensus        44 sGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~  122 (286)
T PRK13646         44 SGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNFKMNLDEVK  122 (286)
T ss_pred             CCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHcCCCHHHHH
Confidence            5999999999999876652   33322110       12235799999997  3444 5999999987665566666777


Q ss_pred             HHHHHHHHHcCCC-cccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEe
Q psy7366          69 TIVNESLNKFALG-HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS-EGRCVILT  146 (566)
Q Consensus        69 ~~~~~~l~~~gl~-~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviii  146 (566)
                      +++.++++.+||. ...++++.+||||||||++||+||+.+|++|||||||++||+.++.++.++|+++++ .|.|||++
T Consensus       123 ~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~v  202 (286)
T PRK13646        123 NYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILV  202 (286)
T ss_pred             HHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence            8899999999997 578899999999999999999999999999999999999999999999999999975 49999999


Q ss_pred             cCChhHHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy7366         147 SHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  179 (566)
Q Consensus       147 sH~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~  179 (566)
                      ||+++++.++||||++|++|+++..|+++++..
T Consensus       203 tH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~  235 (286)
T PRK13646        203 SHDMNEVARYADEVIVMKEGSIVSQTSPKELFK  235 (286)
T ss_pred             ecCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            999999999999999999999999999888654

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=100.00  E-value=2.5e-32  Score=285.50  Aligned_cols=178  Identities=22%  Similarity=0.347  Sum_probs=152.0

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCc-------ccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPT-------IDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTI   70 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~-------~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~   70 (566)
                      .||||++|+++|++.+.+   .+.+....       .....+.|||++|++.+++.+||.||+.|+....  ...+..++
T Consensus        34 sGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~--~~~~~~~~  111 (354)
T TIGR02142        34 SGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRA--RPSERRIS  111 (354)
T ss_pred             CCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHHHHHhhcc--ChhHHHHH
Confidence            599999999999987654   12222111       0122356999999999999999999998865432  22344567


Q ss_pred             HHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEecCC
Q psy7366          71 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHN  149 (566)
Q Consensus        71 ~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiisH~  149 (566)
                      +.++++.+||+...++++.+||||||||++||+||+.+|++|||||||++||+.+++.++++|++++++ |.|||++||+
T Consensus       112 ~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~  191 (354)
T TIGR02142       112 FERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHS  191 (354)
T ss_pred             HHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence            899999999998899999999999999999999999999999999999999999999999999999765 8999999999


Q ss_pred             hhHHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy7366         150 MEECEALCTKLTIMVNGQFTCLGSATHLKSK  180 (566)
Q Consensus       150 ~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~~  180 (566)
                      ++++..+||+|++|++|+++..|+++++...
T Consensus       192 ~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  222 (354)
T TIGR02142       192 LQEVLRLADRVVVLEDGRVAAAGPIAEVWAS  222 (354)
T ss_pred             HHHHHHhCCEEEEEeCCEEEEECCHHHHhcC
Confidence            9999999999999999999999999887643

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=100.00  E-value=1.8e-32  Score=267.33  Aligned_cols=167  Identities=25%  Similarity=0.344  Sum_probs=142.4

Q ss_pred             CCcchHHHHHhccccCCCc---cCCCCCcc------cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQK---VPGSNPTI------DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIV   71 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~---~~~~~~~~------~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~   71 (566)
                      .||||++|+++|++.+.+.   +.+.....      ......|+|++|++.+++.+|+.||+.+.....+.+.....+++
T Consensus        39 sGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~  118 (214)
T TIGR02673        39 AGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRV  118 (214)
T ss_pred             CCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHH
Confidence            5999999999999865441   22211110      01235799999999999999999999887554454445556788


Q ss_pred             HHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChh
Q psy7366          72 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME  151 (566)
Q Consensus        72 ~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~  151 (566)
                      .++++.+|+....++.+.+||||||||++||+||+.+|++|||||||++||+.++.++.++|++++++|+|||++||+++
T Consensus       119 ~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~  198 (214)
T TIGR02673       119 GAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS  198 (214)
T ss_pred             HHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            99999999998889999999999999999999999999999999999999999999999999998777999999999999


Q ss_pred             HHHhhcCEEEEEeCCE
Q psy7366         152 ECEALCTKLTIMVNGQ  167 (566)
Q Consensus       152 ~~~~~~d~i~vl~~G~  167 (566)
                      ++..+||+|++|++|+
T Consensus       199 ~~~~~~d~i~~l~~G~  214 (214)
T TIGR02673       199 LVDRVAHRVIILDDGR  214 (214)
T ss_pred             HHHHhcCEEEEecCCC
Confidence            9999999999999985

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=4.4e-33  Score=251.28  Aligned_cols=180  Identities=21%  Similarity=0.277  Sum_probs=158.4

Q ss_pred             CCcchHHHHHhccccCCCc---cCCCC------------Cccc----ccccceeEEcCCCCCCCCCCHHHHHHHH-HHhc
Q psy7366           1 MGLTTTPKRVVTLLLTTQK---VPGSN------------PTID----KNLSYIGYCPQFDALNDRLTPREHLEFY-SRVR   60 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~---~~~~~------------~~~~----~~~~~ig~v~Q~~~l~~~~tv~e~l~~~-~~~~   60 (566)
                      +||||.+|+|+.+-.|...   +.+..            +.+.    ..+.++|||+|++.||.-|||.||+.-. -...
T Consensus        43 SGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVL  122 (256)
T COG4598          43 SGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVL  122 (256)
T ss_pred             CchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhh
Confidence            5999999999998877651   11111            0101    1235799999999999999999999654 3446


Q ss_pred             CCChhhHHHHHHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCC
Q psy7366          61 NVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEG  140 (566)
Q Consensus        61 ~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g  140 (566)
                      +.++.+..++++.+|.++|+.+..+.++..|||||+||++|||||+.+|+++++|||||+|||+-.-++...+++|+++|
T Consensus       123 g~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEg  202 (256)
T COG4598         123 GVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEG  202 (256)
T ss_pred             cCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhC
Confidence            88899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEecCChhHHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy7366         141 RCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK  180 (566)
Q Consensus       141 ~tviiisH~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~~  180 (566)
                      +|.+++||.+.|+.+++.+|++|++|.|-+.|+|+++...
T Consensus       203 rTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~P~qvf~n  242 (256)
T COG4598         203 RTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVFGN  242 (256)
T ss_pred             CeEEEEeeehhHHHhhhhheEEeecceecccCChHHHhcC
Confidence            9999999999999999999999999999999999998653

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=100.00  E-value=3e-32  Score=267.26  Aligned_cols=176  Identities=26%  Similarity=0.358  Sum_probs=148.0

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCccc----ccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTID----KNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNE   73 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~~----~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~   73 (566)
                      .||||++|++.|++.+.+   .+.+......    .....|+|+||++.+++.+|+.||+.+.....+  ..+...++.+
T Consensus        37 sGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~  114 (222)
T cd03224          37 AGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR--RAKRKARLER  114 (222)
T ss_pred             CCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC--chhHHHHHHH
Confidence            599999999999987654   1223211111    113469999999999999999999988754433  2334556778


Q ss_pred             HHHHc-CCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhH
Q psy7366          74 SLNKF-ALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEE  152 (566)
Q Consensus        74 ~l~~~-gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~  152 (566)
                      +++.+ +++...++++.+||||||||++||+||+.+|++|||||||++||+.+++.++++|+++++.|.|||++||++++
T Consensus       115 ~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~  194 (222)
T cd03224         115 VYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARF  194 (222)
T ss_pred             HHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            88888 57777899999999999999999999999999999999999999999999999999997779999999999999


Q ss_pred             HHhhcCEEEEEeCCEEEEecChhHHH
Q psy7366         153 CEALCTKLTIMVNGQFTCLGSATHLK  178 (566)
Q Consensus       153 ~~~~~d~i~vl~~G~i~~~g~~~~~~  178 (566)
                      +.++||+|++|++|+++..|+++++.
T Consensus       195 ~~~~~d~i~~l~~G~i~~~~~~~~~~  220 (222)
T cd03224         195 ALEIADRAYVLERGRVVLEGTAAELL  220 (222)
T ss_pred             HHHhccEEEEeeCCeEEEeCCHHHHh
Confidence            99999999999999999988877653

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=100.00  E-value=4.4e-32  Score=272.06  Aligned_cols=178  Identities=20%  Similarity=0.247  Sum_probs=150.6

Q ss_pred             CCcchHHHHHhccccCCCc---cCCCCCc----------------ccccccceeEEcCCCCCCCCCCHHHHHHHHH-Hhc
Q psy7366           1 MGLTTTPKRVVTLLLTTQK---VPGSNPT----------------IDKNLSYIGYCPQFDALNDRLTPREHLEFYS-RVR   60 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~---~~~~~~~----------------~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~-~~~   60 (566)
                      .||||++|++.|++.+...   +.+....                .......|+|+||++.+++.+||+||+.++. ...
T Consensus        42 sGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~  121 (257)
T PRK10619         42 SGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL  121 (257)
T ss_pred             CCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC
Confidence            5999999999999876541   2222110                0111357999999999999999999998753 233


Q ss_pred             CCChhhHHHHHHHHHHHcCCCccc-ccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy7366          61 NVPSVLLNTIVNESLNKFALGHYS-DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE  139 (566)
Q Consensus        61 ~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~  139 (566)
                      +....+..+++.++++.+|+.... ++++.+||||||||++||+||+.+|++|||||||++||+.+++++.++|++++++
T Consensus       122 ~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~  201 (257)
T PRK10619        122 GLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEE  201 (257)
T ss_pred             CCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc
Confidence            444455667889999999998764 8899999999999999999999999999999999999999999999999999777


Q ss_pred             CCEEEEecCChhHHHhhcCEEEEEeCCEEEEecChhHHH
Q psy7366         140 GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  178 (566)
Q Consensus       140 g~tviiisH~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~  178 (566)
                      |+|||++||+++++..+||||++|++|++++.|+++++.
T Consensus       202 g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  240 (257)
T PRK10619        202 GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLF  240 (257)
T ss_pred             CCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhh
Confidence            999999999999999999999999999999999888764

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=100.00  E-value=4.5e-32  Score=273.63  Aligned_cols=179  Identities=24%  Similarity=0.283  Sum_probs=150.5

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcc--c----ccccceeEEcCCCCCCCCCCHHHHHHHHHHhc-CCChhhHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI--D----KNLSYIGYCPQFDALNDRLTPREHLEFYSRVR-NVPSVLLNTI   70 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~--~----~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~-~~~~~~~~~~   70 (566)
                      .||||++|+++|++.|..   .+.+.....  .    .....|+|+||++.+++.+||.||+.+..... ..+......+
T Consensus        44 sGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~  123 (269)
T PRK11831         44 IGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHST  123 (269)
T ss_pred             CCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHH
Confidence            599999999999987644   122221110  0    11346999999999999999999998754332 2344445567


Q ss_pred             HHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEecCC
Q psy7366          71 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHN  149 (566)
Q Consensus        71 ~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiisH~  149 (566)
                      +.++++.+|+....++++.+||||||||++||+||+.+|++|||||||++||+.+++.+.++|++++++ |.|||++||+
T Consensus       124 ~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~  203 (269)
T PRK11831        124 VMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHD  203 (269)
T ss_pred             HHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecC
Confidence            888999999998889999999999999999999999999999999999999999999999999998665 8999999999


Q ss_pred             hhHHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy7366         150 MEECEALCTKLTIMVNGQFTCLGSATHLKS  179 (566)
Q Consensus       150 ~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~  179 (566)
                      ++++.++||+|++|++|+++..|+++++..
T Consensus       204 ~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  233 (269)
T PRK11831        204 VPEVLSIADHAYIVADKKIVAHGSAQALQA  233 (269)
T ss_pred             HHHHHHhhCEEEEEECCEEEEeCCHHHHhc
Confidence            999999999999999999999999887643

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.1e-32  Score=284.46  Aligned_cols=174  Identities=22%  Similarity=0.322  Sum_probs=150.0

Q ss_pred             CCcchHHHHHhccccCCCc---cCCCCCc-------ccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQK---VPGSNPT-------IDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTI   70 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~---~~~~~~~-------~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~   70 (566)
                      .||||++|+++|++.+++.   +.+....       .....+.|||++|++.+++.+||.||+.|...      ....++
T Consensus        35 sGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~------~~~~~~  108 (352)
T PRK11144         35 AGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMA------KSMVAQ  108 (352)
T ss_pred             CCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHHhhhh------hhhHHH
Confidence            5999999999999876541   2221111       01123579999999999999999999987642      123467


Q ss_pred             HHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEecCC
Q psy7366          71 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHN  149 (566)
Q Consensus        71 ~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiisH~  149 (566)
                      +.++++.+||+...++++.+||||||||++||+||+.+|++|||||||++||+.+++.+++.|+++.++ |.|||++|||
T Consensus       109 ~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd  188 (352)
T PRK11144        109 FDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHS  188 (352)
T ss_pred             HHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence            889999999998899999999999999999999999999999999999999999999999999998765 8999999999


Q ss_pred             hhHHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy7366         150 MEECEALCTKLTIMVNGQFTCLGSATHLKSK  180 (566)
Q Consensus       150 ~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~~  180 (566)
                      ++++..+||||++|++|+++..|+++++...
T Consensus       189 ~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~  219 (352)
T PRK11144        189 LDEILRLADRVVVLEQGKVKAFGPLEEVWAS  219 (352)
T ss_pred             HHHHHHhCCEEEEEeCCEEEEecCHHHHHhC
Confidence            9999999999999999999999999988654

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=100.00  E-value=2e-32  Score=269.50  Aligned_cols=174  Identities=22%  Similarity=0.299  Sum_probs=144.7

Q ss_pred             CCcchHHHHHhccc-----cCCC---ccCCCCCc-----ccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCCh-hh
Q psy7366           1 MGLTTTPKRVVTLL-----LTTQ---KVPGSNPT-----IDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPS-VL   66 (566)
Q Consensus         1 ~Gktt~~k~~~~~~-----~~~~---~~~~~~~~-----~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~-~~   66 (566)
                      .||||++|+++|++     .+.+   .+.+....     ......+|||+||++.++ .+||.||+.+.....+... .+
T Consensus        37 sGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~  115 (227)
T cd03260          37 CGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEE  115 (227)
T ss_pred             CCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcCCCcHHH
Confidence            59999999999998     5543   12222111     011235799999999888 7999999988655444322 23


Q ss_pred             HHHHHHHHHHHcCCCcccccc--cccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Q psy7366          67 LNTIVNESLNKFALGHYSDRE--VRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVI  144 (566)
Q Consensus        67 ~~~~~~~~l~~~gl~~~~~~~--~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi  144 (566)
                      ..+++.++++.+|+....++.  +.+||||||||++||+||+.+|++|||||||++||+.++++++++|++++++ .|||
T Consensus       116 ~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii  194 (227)
T cd03260         116 LDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIV  194 (227)
T ss_pred             HHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEE
Confidence            567888999999998776666  5999999999999999999999999999999999999999999999999776 9999


Q ss_pred             EecCChhHHHhhcCEEEEEeCCEEEEecChhH
Q psy7366         145 LTSHNMEECEALCTKLTIMVNGQFTCLGSATH  176 (566)
Q Consensus       145 iisH~~~~~~~~~d~i~vl~~G~i~~~g~~~~  176 (566)
                      ++||+++++.++||+|++|++|+++..|++++
T Consensus       195 ~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~  226 (227)
T cd03260         195 IVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ  226 (227)
T ss_pred             EEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence            99999999999999999999999998887654

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=100.00  E-value=2.1e-32  Score=265.10  Aligned_cols=165  Identities=27%  Similarity=0.345  Sum_probs=138.3

Q ss_pred             CCcchHHHHHhccccCCCc---cCCCCCcccccccceeEEcCCCCC-CCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQK---VPGSNPTIDKNLSYIGYCPQFDAL-NDRLTPREHLEFYSRVRNVPSVLLNTIVNESLN   76 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~---~~~~~~~~~~~~~~ig~v~Q~~~l-~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~   76 (566)
                      .||||++|+++|++.|.+.   +.+.........++|||++|++.+ +..+|+.||+.++....+    ...+++.++++
T Consensus        37 sGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~----~~~~~~~~~l~  112 (205)
T cd03226          37 AGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELD----AGNEQAETVLK  112 (205)
T ss_pred             CCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhhhhhcC----ccHHHHHHHHH
Confidence            5999999999999876551   222221111223479999999843 346799999987654332    12357889999


Q ss_pred             HcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHHhh
Q psy7366          77 KFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEAL  156 (566)
Q Consensus        77 ~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~~  156 (566)
                      .+|+....++++.+||||||||++||+||+.+|++|||||||++||+.+++++.++|++++++|.|||++||+++++.++
T Consensus       113 ~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~  192 (205)
T cd03226         113 DLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKV  192 (205)
T ss_pred             HcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence            99999888999999999999999999999999999999999999999999999999999977799999999999999999


Q ss_pred             cCEEEEEeCCEEE
Q psy7366         157 CTKLTIMVNGQFT  169 (566)
Q Consensus       157 ~d~i~vl~~G~i~  169 (566)
                      ||+|++|++|+++
T Consensus       193 ~d~i~~l~~G~iv  205 (205)
T cd03226         193 CDRVLLLANGAIV  205 (205)
T ss_pred             CCEEEEEECCEEC
Confidence            9999999999974

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=100.00  E-value=3.5e-32  Score=265.30  Aligned_cols=170  Identities=28%  Similarity=0.367  Sum_probs=143.4

Q ss_pred             CCcchHHHHHhccccCCCc---cCCCCCc-------ccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQK---VPGSNPT-------IDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTI   70 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~---~~~~~~~-------~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~   70 (566)
                      .||||++|+++|++.+.+.   +.+....       .......|+|++|++.+++.+|+.||+.+.....  ......++
T Consensus        34 sGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~  111 (214)
T cd03297          34 AGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRK--RNREDRIS  111 (214)
T ss_pred             CCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhC--CHHHHHHH
Confidence            5999999999999876541   2222111       0112346999999999999999999998764322  22334567


Q ss_pred             HHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEecCC
Q psy7366          71 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHN  149 (566)
Q Consensus        71 ~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiisH~  149 (566)
                      +.++++.+|+....++++.+||||||||++||+||+.+|++|||||||++||+.+++++.++|++++++ |.|||++||+
T Consensus       112 ~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~  191 (214)
T cd03297         112 VDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHD  191 (214)
T ss_pred             HHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecC
Confidence            889999999988889999999999999999999999999999999999999999999999999999765 8999999999


Q ss_pred             hhHHHhhcCEEEEEeCCEEEEec
Q psy7366         150 MEECEALCTKLTIMVNGQFTCLG  172 (566)
Q Consensus       150 ~~~~~~~~d~i~vl~~G~i~~~g  172 (566)
                      ++++..+||++++|++|+++..|
T Consensus       192 ~~~~~~~~d~i~~l~~G~i~~~g  214 (214)
T cd03297         192 LSEAEYLADRIVVMEDGRLQYIG  214 (214)
T ss_pred             HHHHHHhcCEEEEEECCEEEecC
Confidence            99999999999999999998654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10908 cell division protein FtsE; Provisional

Probab=100.00  E-value=3.6e-32  Score=266.71  Aligned_cols=170  Identities=18%  Similarity=0.210  Sum_probs=145.8

Q ss_pred             CCcchHHHHHhccccCCCc---cCCCCCcc---cc---cccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQK---VPGSNPTI---DK---NLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIV   71 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~---~~~~~~~~---~~---~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~   71 (566)
                      .||||++|+++|++.+.+.   +.+.....   ..   ....++|+||++.+++.+|+.||+.+.....+.+..+..+++
T Consensus        39 sGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~  118 (222)
T PRK10908         39 AGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRV  118 (222)
T ss_pred             CCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHH
Confidence            5999999999999876541   22221111   01   235799999999988899999999887655555555566778


Q ss_pred             HHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChh
Q psy7366          72 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME  151 (566)
Q Consensus        72 ~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~  151 (566)
                      .++++.+|+....++.+.+||||||||++||+||+.+|++|||||||++||+.+++.+.++|++++++|.|||++||+++
T Consensus       119 ~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~  198 (222)
T PRK10908        119 SAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG  198 (222)
T ss_pred             HHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            89999999998889999999999999999999999999999999999999999999999999999777999999999999


Q ss_pred             HHHhhcCEEEEEeCCEEEE
Q psy7366         152 ECEALCTKLTIMVNGQFTC  170 (566)
Q Consensus       152 ~~~~~~d~i~vl~~G~i~~  170 (566)
                      ++..+||||++|++|+++.
T Consensus       199 ~~~~~~d~i~~l~~G~i~~  217 (222)
T PRK10908        199 LISRRSYRMLTLSDGHLHG  217 (222)
T ss_pred             HHHHhCCEEEEEECCEEcc
Confidence            9999999999999999864

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=100.00  E-value=5.2e-32  Score=269.17  Aligned_cols=195  Identities=23%  Similarity=0.303  Sum_probs=156.2

Q ss_pred             ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHH--------CC--CCCCc-----------cEEEEcCccCCCch----
Q psy7366         360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT--------GA--IKPTS-----------GNAYVMNHSIRDSM----  414 (566)
Q Consensus       360 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~--------G~--~~~~~-----------G~i~~~g~~~~~~~----  414 (566)
                      .-|+|+|++|+.|.+++|+|++|||||||++.+.        +.  ..|..           --|.++..++....    
T Consensus         9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~   88 (261)
T cd03271           9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP   88 (261)
T ss_pred             hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence            3589999999999999999999999999998662        11  01211           13677777664311    


Q ss_pred             -------HHhcC----------------ceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCC-c
Q psy7366         415 -------DLVRS----------------YIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGH-Y  470 (566)
Q Consensus       415 -------~~~~~----------------~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~  470 (566)
                             +.+|+                .+.|..++...+..+|+.|++.|+.....      ..++.++++.+||.. .
T Consensus        89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~------~~~~~~~L~~vgL~~l~  162 (261)
T cd03271          89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPK------IARKLQTLCDVGLGYIK  162 (261)
T ss_pred             HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhh------HHHHHHHHHHcCCchhh
Confidence                   11111                14455555555678999999988765321      235678999999987 5


Q ss_pred             cccCcCcCChhHHHHHHHHHHHcCC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEE
Q psy7366         471 SDREVRTLSGGNKRKLSTAIALLGN---PPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKL  547 (566)
Q Consensus       471 ~~~~~~~LSgGqkqrv~la~al~~~---p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv  547 (566)
                      +++++.+|||||+||+.||++|+.+   |+++||||||+|||+..+..+.+.|++++++|.|||++||+++++. .||++
T Consensus       163 l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~-~aD~i  241 (261)
T cd03271         163 LGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIK-CADWI  241 (261)
T ss_pred             hcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEE
Confidence            7999999999999999999999996   7999999999999999999999999999888999999999999986 69999


Q ss_pred             EEE------ECCEEEEecCc
Q psy7366         548 TIM------VNGQFTCLGSA  561 (566)
Q Consensus       548 ~~l------~~G~i~~~g~~  561 (566)
                      ++|      ++|+|+++|++
T Consensus       242 i~Lgp~~g~~~G~iv~~Gt~  261 (261)
T cd03271         242 IDLGPEGGDGGGQVVASGTP  261 (261)
T ss_pred             EEecCCcCCCCCEEEEeCCC
Confidence            999      89999999874

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=100.00  E-value=2.4e-32  Score=266.39  Aligned_cols=168  Identities=23%  Similarity=0.292  Sum_probs=143.8

Q ss_pred             CCcchHHHHHhccccCCCc---cCCCCCcc------cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQK---VPGSNPTI------DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIV   71 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~---~~~~~~~~------~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~   71 (566)
                      .||||++|+++|++.+...   +.+.....      ......|+|++|++.+++.+|+.||+.+.....+.+..+..+++
T Consensus        38 sGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~  117 (214)
T cd03292          38 AGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRV  117 (214)
T ss_pred             CCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHH
Confidence            5999999999999876541   22221110      01234699999999999999999999887655555555566788


Q ss_pred             HHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChh
Q psy7366          72 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME  151 (566)
Q Consensus        72 ~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~  151 (566)
                      .++++.+|++...++++.+||||||||++||+||+.+|++|||||||++||+.+++.+.+.|++++++|.|||++||+++
T Consensus       118 ~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~  197 (214)
T cd03292         118 PAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE  197 (214)
T ss_pred             HHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            99999999998889999999999999999999999999999999999999999999999999999777999999999999


Q ss_pred             HHHhhcCEEEEEeCCEE
Q psy7366         152 ECEALCTKLTIMVNGQF  168 (566)
Q Consensus       152 ~~~~~~d~i~vl~~G~i  168 (566)
                      ++.++||+|++|++|++
T Consensus       198 ~~~~~~d~i~~l~~G~~  214 (214)
T cd03292         198 LVDTTRHRVIALERGKL  214 (214)
T ss_pred             HHHHhCCEEEEEeCCcC
Confidence            99999999999999974

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=100.00  E-value=2.3e-32  Score=271.75  Aligned_cols=177  Identities=23%  Similarity=0.282  Sum_probs=147.4

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcc------cccccceeEEcCCCCCCCCCCHHHHHHHHHHh--------cCCC
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI------DKNLSYIGYCPQFDALNDRLTPREHLEFYSRV--------RNVP   63 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~------~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~--------~~~~   63 (566)
                      .||||++|+++|++.+.+   .+.+.....      ......+||+||++.+++.+||.||+.+....        .+..
T Consensus        39 sGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~  118 (243)
T TIGR02315        39 AGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRF  118 (243)
T ss_pred             CCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccc
Confidence            599999999999986544   122221110      01235699999999999999999999764321        1112


Q ss_pred             hhhHHHHHHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCE
Q psy7366          64 SVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRC  142 (566)
Q Consensus        64 ~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~t  142 (566)
                      ..+..+++.++++.+|+....++++.+||||||||++||+||+.+|++|||||||++||+.+++++.++|++++++ |+|
T Consensus       119 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~t  198 (243)
T TIGR02315       119 SEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGIT  198 (243)
T ss_pred             cHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCE
Confidence            2334567889999999998889999999999999999999999999999999999999999999999999998654 899


Q ss_pred             EEEecCChhHHHhhcCEEEEEeCCEEEEecChhHH
Q psy7366         143 VILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  177 (566)
Q Consensus       143 viiisH~~~~~~~~~d~i~vl~~G~i~~~g~~~~~  177 (566)
                      ||++||+++++.++||+|++|++|+++..|+++++
T Consensus       199 iii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~  233 (243)
T TIGR02315       199 VIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL  233 (243)
T ss_pred             EEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHh
Confidence            99999999999999999999999999999988775

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=100.00  E-value=3e-32  Score=268.64  Aligned_cols=173  Identities=24%  Similarity=0.267  Sum_probs=145.2

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcccccccceeEEcCCCCCCCCCCHHHHHHHHHHh--cCCChhhHHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRV--RNVPSVLLNTIVNESL   75 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~--~~~~~~~~~~~~~~~l   75 (566)
                      .||||++|+++|++.+..   .+.+....  ......+|++|++.+++.+||.||+.+....  .+.+..+..+++.+++
T Consensus        22 sGKSTLl~~l~Gl~~p~~G~i~~~g~~~~--~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l   99 (230)
T TIGR01184        22 CGKSTLLNLISGLAQPTSGGVILEGKQIT--EPGPDRMVVFQNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHI   99 (230)
T ss_pred             CCHHHHHHHHhCCCCCCCceEEECCEECC--CCChhheEEecCcccCCCCCHHHHHHHHHHhcccCCCHHHHHHHHHHHH
Confidence            599999999999987654   12222111  1112358999999999999999999875321  2344445566789999


Q ss_pred             HHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEecCChhHHH
Q psy7366          76 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECE  154 (566)
Q Consensus        76 ~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiisH~~~~~~  154 (566)
                      +.+|++...++++.+||||||||++||+||+.+|++|||||||++||+.+++++.+.|++++++ |+|||++||+++++.
T Consensus       100 ~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~  179 (230)
T TIGR01184       100 ALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEAL  179 (230)
T ss_pred             HHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence            9999998889999999999999999999999999999999999999999999999999998664 899999999999999


Q ss_pred             hhcCEEEEEeCCEEEEecChh
Q psy7366         155 ALCTKLTIMVNGQFTCLGSAT  175 (566)
Q Consensus       155 ~~~d~i~vl~~G~i~~~g~~~  175 (566)
                      ++||||++|++|+++..|+..
T Consensus       180 ~~~d~v~~l~~G~i~~~~~~~  200 (230)
T TIGR01184       180 LLSDRVVMLTNGPAANIGQIL  200 (230)
T ss_pred             HhcCEEEEEeCCcEecccCce
Confidence            999999999999999877543

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=100.00  E-value=3.5e-32  Score=264.74  Aligned_cols=171  Identities=18%  Similarity=0.248  Sum_probs=142.2

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcc-cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI-DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLN   76 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~-~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~   76 (566)
                      .||||++|+++|++.+.+   .+.+..... ......+||++|++.+++.+|+.||+.+............++++.++++
T Consensus        35 sGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~  114 (211)
T cd03298          35 SGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALA  114 (211)
T ss_pred             CCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHH
Confidence            599999999999987654   122221111 1123569999999999999999999987543211112234567889999


Q ss_pred             HcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEecCChhHHHh
Q psy7366          77 KFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS-EGRCVILTSHNMEECEA  155 (566)
Q Consensus        77 ~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviiisH~~~~~~~  155 (566)
                      .+|++...++++.+||||||||++||+||+.+|++|||||||++||+.+++++.++|+++++ .|.|||++||+++++.+
T Consensus       115 ~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~  194 (211)
T cd03298         115 RVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKR  194 (211)
T ss_pred             HcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh
Confidence            99999888999999999999999999999999999999999999999999999999999865 49999999999999999


Q ss_pred             hcCEEEEEeCCEEEEe
Q psy7366         156 LCTKLTIMVNGQFTCL  171 (566)
Q Consensus       156 ~~d~i~vl~~G~i~~~  171 (566)
                      +||||++|++|+++..
T Consensus       195 ~~d~i~~l~~G~i~~~  210 (211)
T cd03298         195 LAQRVVFLDNGRIAAQ  210 (211)
T ss_pred             hhCEEEEEECCEEeec
Confidence            9999999999999864

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=100.00  E-value=7.6e-32  Score=266.90  Aligned_cols=178  Identities=26%  Similarity=0.439  Sum_probs=151.0

Q ss_pred             CCcchHHHHHhccccCCCc---cCCCCCcc--cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQK---VPGSNPTI--DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL   75 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~---~~~~~~~~--~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l   75 (566)
                      .||||++|+++|++.|...   +.+.....  ......++|+||++.+++.+|+.||+.+.....+.+..+..+++.+++
T Consensus        38 sGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l  117 (236)
T TIGR03864        38 AGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALL  117 (236)
T ss_pred             CCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            5999999999999876541   22221111  111246999999999888999999998776554555555667789999


Q ss_pred             HHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEecCChhHHH
Q psy7366          76 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS-EGRCVILTSHNMEECE  154 (566)
Q Consensus        76 ~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviiisH~~~~~~  154 (566)
                      +.+|++...++.+.+||||||||++||+||+.+|++|||||||++||+.+++++.++|+++++ .|.|||++||+++++.
T Consensus       118 ~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~  197 (236)
T TIGR03864       118 ARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIE  197 (236)
T ss_pred             HHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHh
Confidence            999999888999999999999999999999999999999999999999999999999999874 5899999999999997


Q ss_pred             hhcCEEEEEeCCEEEEecChhHHHh
Q psy7366         155 ALCTKLTIMVNGQFTCLGSATHLKS  179 (566)
Q Consensus       155 ~~~d~i~vl~~G~i~~~g~~~~~~~  179 (566)
                      . ||+|++|++|+++..|+++++..
T Consensus       198 ~-~d~i~~l~~G~i~~~~~~~~~~~  221 (236)
T TIGR03864       198 A-DDRLVVLHRGRVLADGAAAELRG  221 (236)
T ss_pred             h-CCEEEEEeCCeEEEeCCHHHHHH
Confidence            5 99999999999999999887754

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>KOG0054|consensus

Probab=100.00  E-value=5.4e-32  Score=312.85  Aligned_cols=204  Identities=22%  Similarity=0.379  Sum_probs=174.3

Q ss_pred             CCeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcC
Q psy7366         340 GDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRS  419 (566)
Q Consensus       340 ~~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~  419 (566)
                      ...++++|.+++++. .+..+.|+||||+|++|+.+||+||-|||||+||.+|.|.++..+|+|.++|            
T Consensus       516 ~~~i~i~~~sfsW~~-~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~g------------  582 (1381)
T KOG0054|consen  516 ENAIEIKNGSFSWDS-ESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNG------------  582 (1381)
T ss_pred             CceEEEeeeeEecCC-CCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcC------------
Confidence            457999999999875 3345589999999999999999999999999999999999999999999998            


Q ss_pred             ceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCcc-----------ccCcCcCChhHHHHHHH
Q psy7366         420 YIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYS-----------DREVRTLSGGNKRKLST  488 (566)
Q Consensus       420 ~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGqkqrv~l  488 (566)
                      .++||||.|.+++. ||+|||.|+..       .++++.++.++...|.++.           ..+.-+||||||||++|
T Consensus       583 siaYv~Q~pWI~ng-TvreNILFG~~-------~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsL  654 (1381)
T KOG0054|consen  583 SVAYVPQQPWIQNG-TVRENILFGSP-------YDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISL  654 (1381)
T ss_pred             eEEEeccccHhhCC-cHHHhhhcCcc-------ccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHH
Confidence            39999999998876 99999988643       2345566777777665432           34566999999999999


Q ss_pred             HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         489 AIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       489 a~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      |||+.++++|+|||.|+|++|.+.-+.+++-.-.-.-+++|+|+|||.++++.+ ||.|++|++|+|++.|+.+++.
T Consensus       655 ARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~-ad~Iivl~~G~I~~~Gty~el~  730 (1381)
T KOG0054|consen  655 ARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPH-ADQIIVLKDGKIVESGTYEELL  730 (1381)
T ss_pred             HHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhh-CCEEEEecCCeEecccCHHHHH
Confidence            999999999999999999999998887776443333347999999999888765 9999999999999999998874

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6.9e-32  Score=266.72  Aligned_cols=172  Identities=22%  Similarity=0.295  Sum_probs=144.7

Q ss_pred             CCcchHHHHHhccccCCCc---cCCCCCcccc-------cccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQK---VPGSNPTIDK-------NLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTI   70 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~---~~~~~~~~~~-------~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~   70 (566)
                      .||||++|+++|++.+.+.   +.+.......       ....|||+||++.+++.+|+.||+.+.....+.+..+..++
T Consensus        46 sGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~  125 (233)
T PRK11629         46 SGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSR  125 (233)
T ss_pred             CCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHH
Confidence            5999999999999866541   2222111100       12469999999999999999999988654444455556678


Q ss_pred             HHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEecCC
Q psy7366          71 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS-EGRCVILTSHN  149 (566)
Q Consensus        71 ~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviiisH~  149 (566)
                      +.++++.+|++...++.+.+||||||||++||+||+.+|++|||||||++||+.+++++.++|+++++ .|+|||++||+
T Consensus       126 ~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~  205 (233)
T PRK11629        126 ALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHD  205 (233)
T ss_pred             HHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            89999999999888999999999999999999999999999999999999999999999999999865 58999999999


Q ss_pred             hhHHHhhcCEEEEEeCCEEEEecC
Q psy7366         150 MEECEALCTKLTIMVNGQFTCLGS  173 (566)
Q Consensus       150 ~~~~~~~~d~i~vl~~G~i~~~g~  173 (566)
                      ++++.. +|++++|++|+++..++
T Consensus       206 ~~~~~~-~~~~~~l~~G~i~~~~~  228 (233)
T PRK11629        206 LQLAKR-MSRQLEMRDGRLTAELS  228 (233)
T ss_pred             HHHHHh-hCEEEEEECCEEEEEec
Confidence            999987 57999999999987664

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=99.98  E-value=6.5e-32  Score=268.41  Aligned_cols=177  Identities=23%  Similarity=0.326  Sum_probs=150.0

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCc---------ccccccceeEEcCCCCCCCCCCHHHHHHHH-HHhcCCChhhH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPT---------IDKNLSYIGYCPQFDALNDRLTPREHLEFY-SRVRNVPSVLL   67 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~---------~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~-~~~~~~~~~~~   67 (566)
                      .||||++|+++|++.+.+   .+.+....         .......|+|+||++.+++.+||.||+.+. ....+.+..+.
T Consensus        39 sGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~  118 (242)
T PRK11124         39 AGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQA  118 (242)
T ss_pred             CCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHH
Confidence            599999999999987654   12222110         011235799999999999999999999753 33334444555


Q ss_pred             HHHHHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEec
Q psy7366          68 NTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTS  147 (566)
Q Consensus        68 ~~~~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiis  147 (566)
                      .+++.++++.+|++...++.+.+||||||||++||+||+.+|++|||||||++||+.+++++.++|++++++|+|||++|
T Consensus       119 ~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~s  198 (242)
T PRK11124        119 LARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVT  198 (242)
T ss_pred             HHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence            67889999999999888999999999999999999999999999999999999999999999999999977799999999


Q ss_pred             CChhHHHhhcCEEEEEeCCEEEEecChhHH
Q psy7366         148 HNMEECEALCTKLTIMVNGQFTCLGSATHL  177 (566)
Q Consensus       148 H~~~~~~~~~d~i~vl~~G~i~~~g~~~~~  177 (566)
                      |+++++.++||++++|++|+++..|+++++
T Consensus       199 h~~~~~~~~~d~i~~l~~g~i~~~~~~~~~  228 (242)
T PRK11124        199 HEVEVARKTASRVVYMENGHIVEQGDASCF  228 (242)
T ss_pred             CCHHHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence            999999999999999999999999987765

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=99.98  E-value=8.5e-32  Score=268.41  Aligned_cols=177  Identities=22%  Similarity=0.296  Sum_probs=149.6

Q ss_pred             CCcchHHHHHhccccCC-----C---ccCCCCCc-----ccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcC-CChhh
Q psy7366           1 MGLTTTPKRVVTLLLTT-----Q---KVPGSNPT-----IDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRN-VPSVL   66 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~-----~---~~~~~~~~-----~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~-~~~~~   66 (566)
                      .||||++|++.|++.|.     +   .+.+....     .......|+|+||++.+++ .|+.||+.+.....+ .+..+
T Consensus        38 sGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~  116 (247)
T TIGR00972        38 CGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKE  116 (247)
T ss_pred             CCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHH
Confidence            59999999999999754     3   12222211     1122357999999999888 999999988655444 23445


Q ss_pred             HHHHHHHHHHHcCCC----cccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q psy7366          67 LNTIVNESLNKFALG----HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC  142 (566)
Q Consensus        67 ~~~~~~~~l~~~gl~----~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~t  142 (566)
                      ..+++.++++.+|+.    ...++++.+||||||||++||+||+.+|++|||||||++||+.++..+.++|+++++ +.|
T Consensus       117 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~t  195 (247)
T TIGR00972       117 LDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYT  195 (247)
T ss_pred             HHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCe
Confidence            567889999999998    667899999999999999999999999999999999999999999999999999866 489


Q ss_pred             EEEecCChhHHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy7366         143 VILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  179 (566)
Q Consensus       143 viiisH~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~  179 (566)
                      ||++||+++++.++||+|++|++|+++..|+++++..
T Consensus       196 iiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  232 (247)
T TIGR00972       196 IVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFT  232 (247)
T ss_pred             EEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence            9999999999999999999999999999999888643

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=99.98  E-value=5.3e-32  Score=268.88  Aligned_cols=178  Identities=29%  Similarity=0.432  Sum_probs=151.0

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcc----cccccceeEEcCCCCCCCCCCHHHHHHHHHHhc-CCChhhHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI----DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVR-NVPSVLLNTIVN   72 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~----~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~   72 (566)
                      .||||++|++.|++.+..   .+.+.....    ......|+|+||++.+++.+||.||+.+..... +.+..+...++.
T Consensus        40 sGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~  119 (241)
T PRK10895         40 AGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRAN  119 (241)
T ss_pred             CCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHH
Confidence            599999999999987644   122221111    112356999999999999999999998764332 233445567889


Q ss_pred             HHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhH
Q psy7366          73 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEE  152 (566)
Q Consensus        73 ~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~  152 (566)
                      ++++.+|++...++++.+|||||+||++||+||+.+|++|||||||++||+.++++++++|++++++|.|||++||++++
T Consensus       120 ~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~  199 (241)
T PRK10895        120 ELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRE  199 (241)
T ss_pred             HHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHH
Confidence            99999999888899999999999999999999999999999999999999999999999999987779999999999999


Q ss_pred             HHhhcCEEEEEeCCEEEEecChhHHH
Q psy7366         153 CEALCTKLTIMVNGQFTCLGSATHLK  178 (566)
Q Consensus       153 ~~~~~d~i~vl~~G~i~~~g~~~~~~  178 (566)
                      +..+||+|++|++|+++..|+++++.
T Consensus       200 ~~~~~d~v~~l~~G~i~~~~~~~~~~  225 (241)
T PRK10895        200 TLAVCERAYIVSQGHLIAHGTPTEIL  225 (241)
T ss_pred             HHHhcCEEEEEeCCeEEeeCCHHHHh
Confidence            99999999999999999999988764

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.98  E-value=5.8e-32  Score=274.70  Aligned_cols=179  Identities=20%  Similarity=0.296  Sum_probs=152.7

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCc-----ccccccceeEEcCCCC-CCCCCCHHHHHHHHHHhcCCChhhHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPT-----IDKNLSYIGYCPQFDA-LNDRLTPREHLEFYSRVRNVPSVLLNTIV   71 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~-----~~~~~~~ig~v~Q~~~-l~~~~tv~e~l~~~~~~~~~~~~~~~~~~   71 (566)
                      .||||++|+++|++.+.+   .+.+....     .......|||+||++. .+...||.||+.+.....+.+..+..+++
T Consensus        43 aGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~  122 (283)
T PRK13636         43 AGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRV  122 (283)
T ss_pred             CCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHH
Confidence            599999999999987655   23332211     0122357999999984 23457999999887655566666667789


Q ss_pred             HHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEecCCh
Q psy7366          72 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNM  150 (566)
Q Consensus        72 ~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiisH~~  150 (566)
                      .++++.+||....++++.+||||||||++||+||+.+|++|||||||++||+.++..+.++|++++++ |.|||++||++
T Consensus       123 ~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~  202 (283)
T PRK13636        123 DNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDI  202 (283)
T ss_pred             HHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence            99999999998899999999999999999999999999999999999999999999999999999765 99999999999


Q ss_pred             hHHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy7366         151 EECEALCTKLTIMVNGQFTCLGSATHLKS  179 (566)
Q Consensus       151 ~~~~~~~d~i~vl~~G~i~~~g~~~~~~~  179 (566)
                      +++..+||||++|++|++++.|+++++..
T Consensus       203 ~~~~~~~dri~~l~~G~i~~~g~~~~~~~  231 (283)
T PRK13636        203 DIVPLYCDNVFVMKEGRVILQGNPKEVFA  231 (283)
T ss_pred             HHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            99999999999999999999999988754

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=99.98  E-value=7.2e-32  Score=269.88  Aligned_cols=172  Identities=23%  Similarity=0.292  Sum_probs=146.5

Q ss_pred             CCcchHHHHHhccccCCCc---cCCCCCcccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQK---VPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNK   77 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~---~~~~~~~~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~   77 (566)
                      .||||++|+++|++.+...   +.+....  .....+||++|++.+++.+||.||+.+.....+.+..+..+++.++++.
T Consensus        38 sGKSTLl~~l~Gl~~p~~G~i~~~g~~~~--~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~  115 (255)
T PRK11248         38 CGKTTLLNLIAGFVPYQHGSITLDGKPVE--GPGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKK  115 (255)
T ss_pred             CCHHHHHHHHhCCCCCCCcEEEECCEECC--CCCCcEEEEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHH
Confidence            5999999999999876541   2222111  1123599999999999999999999876554455555566788999999


Q ss_pred             cCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEecCChhHHHhh
Q psy7366          78 FALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS-EGRCVILTSHNMEECEAL  156 (566)
Q Consensus        78 ~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviiisH~~~~~~~~  156 (566)
                      +|+....++++.+||||||||++||+||+.+|++|||||||++||+.++.++.++|+++++ .|.|||++||+++++..+
T Consensus       116 ~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~  195 (255)
T PRK11248        116 VGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFM  195 (255)
T ss_pred             cCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence            9999888999999999999999999999999999999999999999999999999999854 589999999999999999


Q ss_pred             cCEEEEEe--CCEEEEecCh
Q psy7366         157 CTKLTIMV--NGQFTCLGSA  174 (566)
Q Consensus       157 ~d~i~vl~--~G~i~~~g~~  174 (566)
                      ||+|++|+  +|+++..++.
T Consensus       196 ~d~i~~l~~~~G~i~~~~~~  215 (255)
T PRK11248        196 ATELVLLSPGPGRVVERLPL  215 (255)
T ss_pred             CCEEEEEeCCCcEEEEEecC
Confidence            99999999  5999987654

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.98  E-value=9.1e-32  Score=269.88  Aligned_cols=177  Identities=19%  Similarity=0.250  Sum_probs=148.1

Q ss_pred             CCcchHHHHHhccccC-------CC-ccCCCCCcc-----cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhH
Q psy7366           1 MGLTTTPKRVVTLLLT-------TQ-KVPGSNPTI-----DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLL   67 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~-------~~-~~~~~~~~~-----~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~   67 (566)
                      .||||++|++.|++.+       |+ .+.+.....     ......+||+||++.+++ +|+.||+.+.....+.+....
T Consensus        49 sGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~  127 (258)
T PRK14268         49 CGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKKDL  127 (258)
T ss_pred             CCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCHHHH
Confidence            5999999999999753       32 122221110     112356999999998887 899999998765555555555


Q ss_pred             HHHHHHHHHHcCCC----cccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy7366          68 NTIVNESLNKFALG----HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCV  143 (566)
Q Consensus        68 ~~~~~~~l~~~gl~----~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tv  143 (566)
                      .+++.++++.+|+.    ...++++.+||||||||++||+||+.+|++|||||||++||+.++.+++++|+++++ |+||
T Consensus       128 ~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~ti  206 (258)
T PRK14268        128 DGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTI  206 (258)
T ss_pred             HHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEE
Confidence            66788999999984    456889999999999999999999999999999999999999999999999999854 8999


Q ss_pred             EEecCChhHHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy7366         144 ILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  179 (566)
Q Consensus       144 iiisH~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~  179 (566)
                      |++||+++++.++||||++|++|+++..|+++++..
T Consensus       207 iivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  242 (258)
T PRK14268        207 VIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFH  242 (258)
T ss_pred             EEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            999999999999999999999999999999888753

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.98  E-value=4e-32  Score=256.68  Aligned_cols=178  Identities=26%  Similarity=0.386  Sum_probs=149.7

Q ss_pred             CCcchHHHHHhccccCC--C------ccCCCCCcccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTT--Q------KVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVN   72 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~--~------~~~~~~~~~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~   72 (566)
                      .|||||+|+|+|++.+.  +      .++..++. ...+.+|+||||...+|+.+||+||+..+.....- ........+
T Consensus        40 aGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~-~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~-~~~~~~~~e  117 (237)
T COG0410          40 AGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPH-ERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD-KEAQERDLE  117 (237)
T ss_pred             CCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHH-HHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc-cccccccHH
Confidence            59999999999998763  2      23332222 23357899999999999999999999887544321 111222277


Q ss_pred             HHHHHcC-CCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEecCCh
Q psy7366          73 ESLNKFA-LGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNM  150 (566)
Q Consensus        73 ~~l~~~g-l~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiisH~~  150 (566)
                      ++.+.|- |.+.++++.++|||||||.++|||||+.+|++|+|||||.||-|.-++++++.|++++++ |.||++++++.
T Consensus       118 ~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~  197 (237)
T COG0410         118 EVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNA  197 (237)
T ss_pred             HHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccH
Confidence            7888875 667889999999999999999999999999999999999999999999999999999866 78999999999


Q ss_pred             hHHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy7366         151 EECEALCTKLTIMVNGQFTCLGSATHLKSK  180 (566)
Q Consensus       151 ~~~~~~~d~i~vl~~G~i~~~g~~~~~~~~  180 (566)
                      .++.+++||.+||++|+|+..|+.+++..+
T Consensus       198 ~~Al~iaDr~yvle~Griv~~G~~~eL~~~  227 (237)
T COG0410         198 RFALEIADRGYVLENGRIVLSGTAAELLAD  227 (237)
T ss_pred             HHHHHhhCEEEEEeCCEEEEecCHHHHhcC
Confidence            999999999999999999999999998654

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.98  E-value=4.9e-32  Score=263.68  Aligned_cols=167  Identities=28%  Similarity=0.376  Sum_probs=140.2

Q ss_pred             CCcchHHHHHhccccCCCc---cCCCCCcc---cccccceeEEcCCCCC-CCCCCHHHHHHHHHHhcCCChhhHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQK---VPGSNPTI---DKNLSYIGYCPQFDAL-NDRLTPREHLEFYSRVRNVPSVLLNTIVNE   73 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~---~~~~~~~~---~~~~~~ig~v~Q~~~l-~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~   73 (566)
                      .||||++|+++|++.+.+.   +.+.....   ......|+|+||++.+ ++.+|+.||+.+.....+.+.....+++.+
T Consensus        38 sGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~  117 (211)
T cd03225          38 SGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEE  117 (211)
T ss_pred             CCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            5999999999999876541   22221110   1123579999999853 567899999987654444444455667889


Q ss_pred             HHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHH
Q psy7366          74 SLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEEC  153 (566)
Q Consensus        74 ~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~  153 (566)
                      +++.+|++...++++.+||||||||++||+||+.+|++|||||||++||+.+++++.++|++++++|.|||++||+++++
T Consensus       118 ~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~  197 (211)
T cd03225         118 ALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLL  197 (211)
T ss_pred             HHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence            99999998888999999999999999999999999999999999999999999999999999977799999999999999


Q ss_pred             HhhcCEEEEEeCCE
Q psy7366         154 EALCTKLTIMVNGQ  167 (566)
Q Consensus       154 ~~~~d~i~vl~~G~  167 (566)
                      ..+||+|++|++|+
T Consensus       198 ~~~~d~i~~l~~G~  211 (211)
T cd03225         198 LELADRVIVLEDGK  211 (211)
T ss_pred             HHhCCEEEEEeCCC
Confidence            99999999999985

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=99.98  E-value=1.1e-31  Score=277.30  Aligned_cols=180  Identities=19%  Similarity=0.225  Sum_probs=152.1

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcc------cccccceeEEcCCC--CCCCCCCHHHHHHHHHHhc-CCChhhHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI------DKNLSYIGYCPQFD--ALNDRLTPREHLEFYSRVR-NVPSVLLN   68 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~------~~~~~~ig~v~Q~~--~l~~~~tv~e~l~~~~~~~-~~~~~~~~   68 (566)
                      .||||++|+|+|++.+..   .+.+.....      .....+|+||||+|  .+++.+|+.+++.+..... +....+..
T Consensus        52 sGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~  131 (327)
T PRK11308         52 CGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERR  131 (327)
T ss_pred             CcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHH
Confidence            599999999999986543   122221111      01234799999998  5788899999997654433 45556667


Q ss_pred             HHHHHHHHHcCCCc-ccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEe
Q psy7366          69 TIVNESLNKFALGH-YSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILT  146 (566)
Q Consensus        69 ~~~~~~l~~~gl~~-~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviii  146 (566)
                      +++.++++.+||.. ..++++.+|||||+||++||+||+.+|++||+||||++||+.++.+++++|++++++ |.|||+|
T Consensus       132 ~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~i  211 (327)
T PRK11308        132 EKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFI  211 (327)
T ss_pred             HHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence            88999999999974 679999999999999999999999999999999999999999999999999999764 9999999


Q ss_pred             cCChhHHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy7366         147 SHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK  180 (566)
Q Consensus       147 sH~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~~  180 (566)
                      |||++++..+||||++|++|++++.|+.+++...
T Consensus       212 THdl~~~~~~adrv~vm~~G~ive~g~~~~~~~~  245 (327)
T PRK11308        212 SHDLSVVEHIADEVMVMYLGRCVEKGTKEQIFNN  245 (327)
T ss_pred             eCCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence            9999999999999999999999999999988653

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.98  E-value=9.3e-32  Score=272.45  Aligned_cols=179  Identities=21%  Similarity=0.306  Sum_probs=152.1

Q ss_pred             CCcchHHHHHhccccCCCc---cCCCCCcc---cccccceeEEcCCCC-CCCCCCHHHHHHHHHHhcCCChhhHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQK---VPGSNPTI---DKNLSYIGYCPQFDA-LNDRLTPREHLEFYSRVRNVPSVLLNTIVNE   73 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~---~~~~~~~~---~~~~~~ig~v~Q~~~-l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~   73 (566)
                      .||||++|+++|++.+.+.   +.+.....   ......|||++|++. .+...||.||+.+.....+.+.....+++.+
T Consensus        41 sGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~  120 (277)
T PRK13652         41 AGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSS  120 (277)
T ss_pred             CCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHH
Confidence            5999999999999876652   22321111   122346999999984 3346899999987665445666666778899


Q ss_pred             HHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEecCChhH
Q psy7366          74 SLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEE  152 (566)
Q Consensus        74 ~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiisH~~~~  152 (566)
                      +++.+||....++.+.+||||||||++||+||+.+|++|||||||++||+.+++++.++|++++++ |.|||++||++++
T Consensus       121 ~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~  200 (277)
T PRK13652        121 ALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDL  200 (277)
T ss_pred             HHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence            999999998899999999999999999999999999999999999999999999999999999765 9999999999999


Q ss_pred             HHhhcCEEEEEeCCEEEEecChhHHHh
Q psy7366         153 CEALCTKLTIMVNGQFTCLGSATHLKS  179 (566)
Q Consensus       153 ~~~~~d~i~vl~~G~i~~~g~~~~~~~  179 (566)
                      +.++||||++|++|+++..|+++++..
T Consensus       201 ~~~~~drv~~l~~G~i~~~g~~~~~~~  227 (277)
T PRK13652        201 VPEMADYIYVMDKGRIVAYGTVEEIFL  227 (277)
T ss_pred             HHHhCCEEEEEECCeEEEECCHHHHhc
Confidence            999999999999999999999988753

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.98  E-value=7.7e-32  Score=272.53  Aligned_cols=178  Identities=24%  Similarity=0.305  Sum_probs=151.7

Q ss_pred             CCcchHHHHHhccccCCCc---cCCCCCcc----cccccceeEEcCCCCC-CCCCCHHHHHHHHHHhcCCChhhHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQK---VPGSNPTI----DKNLSYIGYCPQFDAL-NDRLTPREHLEFYSRVRNVPSVLLNTIVN   72 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~---~~~~~~~~----~~~~~~ig~v~Q~~~l-~~~~tv~e~l~~~~~~~~~~~~~~~~~~~   72 (566)
                      .||||++|+++|++.+...   +.+.....    ......|||+||+|.. +...|+.||+.+.....+.+..+..+++.
T Consensus        39 sGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~  118 (274)
T PRK13644         39 SGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVD  118 (274)
T ss_pred             CCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHH
Confidence            5999999999999876541   33322111    1123569999999863 56789999998876555566666777899


Q ss_pred             HHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhH
Q psy7366          73 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEE  152 (566)
Q Consensus        73 ~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~  152 (566)
                      ++++.+||+...++++.+||||||||++||+||+.+|++|||||||++||+.++..++++|++++++|.|||++||++++
T Consensus       119 ~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~  198 (274)
T PRK13644        119 RALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEE  198 (274)
T ss_pred             HHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence            99999999988899999999999999999999999999999999999999999999999999998779999999999999


Q ss_pred             HHhhcCEEEEEeCCEEEEecChhHHHh
Q psy7366         153 CEALCTKLTIMVNGQFTCLGSATHLKS  179 (566)
Q Consensus       153 ~~~~~d~i~vl~~G~i~~~g~~~~~~~  179 (566)
                      +. .||||++|++|+++..|+++++..
T Consensus       199 ~~-~~d~v~~l~~G~i~~~g~~~~~~~  224 (274)
T PRK13644        199 LH-DADRIIVMDRGKIVLEGEPENVLS  224 (274)
T ss_pred             Hh-hCCEEEEEECCEEEEECCHHHHhc
Confidence            95 699999999999999999888653

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=99.98  E-value=8.2e-32  Score=263.97  Aligned_cols=168  Identities=21%  Similarity=0.296  Sum_probs=140.6

Q ss_pred             CCcchHHHHHhccccCCCc---cCCCCCccc---c----cccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQK---VPGSNPTID---K----NLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTI   70 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~---~~~~~~~~~---~----~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~   70 (566)
                      .||||++|+++|++.+...   +.+......   .    ....|+|++|++.+++.+||+||+.+.......+..+..++
T Consensus        42 sGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~  121 (221)
T TIGR02211        42 SGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKER  121 (221)
T ss_pred             CCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHH
Confidence            5999999999999876541   222211110   0    11469999999999989999999988654444444445667


Q ss_pred             HHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEecCC
Q psy7366          71 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHN  149 (566)
Q Consensus        71 ~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiisH~  149 (566)
                      +.++++.+|++...++++.+||||||||++||+||+.+|++|||||||++||+.+++++.++|++++++ |.|||++||+
T Consensus       122 ~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~  201 (221)
T TIGR02211       122 AYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHD  201 (221)
T ss_pred             HHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            889999999998889999999999999999999999999999999999999999999999999998764 8999999999


Q ss_pred             hhHHHhhcCEEEEEeCCEEE
Q psy7366         150 MEECEALCTKLTIMVNGQFT  169 (566)
Q Consensus       150 ~~~~~~~~d~i~vl~~G~i~  169 (566)
                      ++++.. ||+|++|++|+++
T Consensus       202 ~~~~~~-~d~v~~l~~G~i~  220 (221)
T TIGR02211       202 LELAKK-LDRVLEMKDGQLF  220 (221)
T ss_pred             HHHHhh-cCEEEEEeCCEec
Confidence            999865 8999999999975

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=99.98  E-value=5.4e-32  Score=263.75  Aligned_cols=168  Identities=24%  Similarity=0.378  Sum_probs=138.5

Q ss_pred             CCcchHHHHHhccccCCCc---cCCCCCcccccccceeEEcCCCCCC--CCCCHHHHHHHHHHhcC----CChhhHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQK---VPGSNPTIDKNLSYIGYCPQFDALN--DRLTPREHLEFYSRVRN----VPSVLLNTIV   71 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~---~~~~~~~~~~~~~~ig~v~Q~~~l~--~~~tv~e~l~~~~~~~~----~~~~~~~~~~   71 (566)
                      .||||++|++.|++.|.+.   +.+....  .....|+|+||++.++  ..+||.||+.+......    .......+++
T Consensus        36 sGKSTLl~~l~G~~~p~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~  113 (213)
T cd03235          36 AGKSTLLKAILGLLKPTSGSIRVFGKPLE--KERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKV  113 (213)
T ss_pred             CCHHHHHHHHcCCCCCCCCEEEECCccHH--HHHhheEEeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHH
Confidence            5999999999999876541   2222111  2235699999998764  34899999987543211    1223445678


Q ss_pred             HHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChh
Q psy7366          72 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME  151 (566)
Q Consensus        72 ~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~  151 (566)
                      .++++.+|++...++++.+||||||||++||+||+.+|++|||||||++||+.+++++.++|++++++|.|||++||+++
T Consensus       114 ~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~  193 (213)
T cd03235         114 DEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLG  193 (213)
T ss_pred             HHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            99999999988889999999999999999999999999999999999999999999999999998778999999999999


Q ss_pred             HHHhhcCEEEEEeCCEEEEe
Q psy7366         152 ECEALCTKLTIMVNGQFTCL  171 (566)
Q Consensus       152 ~~~~~~d~i~vl~~G~i~~~  171 (566)
                      ++.++||+|++|++| +++.
T Consensus       194 ~~~~~~d~i~~l~~~-~~~~  212 (213)
T cd03235         194 LVLEYFDRVLLLNRT-VVAS  212 (213)
T ss_pred             HHHHhcCEEEEEcCc-Eeec
Confidence            999999999999986 4443

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.98  E-value=1e-31  Score=272.76  Aligned_cols=177  Identities=23%  Similarity=0.326  Sum_probs=148.9

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcc-------cccccceeEEcCCC--CCCCCCCHHHHHHHHHHhcCCChhhHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI-------DKNLSYIGYCPQFD--ALNDRLTPREHLEFYSRVRNVPSVLLN   68 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~-------~~~~~~ig~v~Q~~--~l~~~~tv~e~l~~~~~~~~~~~~~~~   68 (566)
                      .||||++|+++|++.|.+   .+.+.....       ......|+|+||++  .+++ .||.||+.+.....+.+..+..
T Consensus        44 sGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~  122 (280)
T PRK13649         44 SGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNFGVSQEEAE  122 (280)
T ss_pred             CCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHcCCCHHHHH
Confidence            599999999999987654   122221110       11234699999997  3454 6999999887655555555566


Q ss_pred             HHHHHHHHHcCCC-cccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEec
Q psy7366          69 TIVNESLNKFALG-HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTS  147 (566)
Q Consensus        69 ~~~~~~l~~~gl~-~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiis  147 (566)
                      +++.++++.+||. ...++++.+||||||||++||+||+.+|++|||||||++||+.+++.+.++|++++++|+|||++|
T Consensus       123 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivs  202 (280)
T PRK13649        123 ALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVT  202 (280)
T ss_pred             HHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence            7788999999997 467999999999999999999999999999999999999999999999999999977799999999


Q ss_pred             CChhHHHhhcCEEEEEeCCEEEEecChhHHH
Q psy7366         148 HNMEECEALCTKLTIMVNGQFTCLGSATHLK  178 (566)
Q Consensus       148 H~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~  178 (566)
                      |+++++..+||+|++|++|+++..|+++++.
T Consensus       203 H~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  233 (280)
T PRK13649        203 HLMDDVANYADFVYVLEKGKLVLSGKPKDIF  233 (280)
T ss_pred             ccHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence            9999999999999999999999999988764

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.98  E-value=2.4e-32  Score=247.21  Aligned_cols=132  Identities=39%  Similarity=0.641  Sum_probs=118.2

Q ss_pred             eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCceEEEecCCCCCCCCCHHHHH
Q psy7366         362 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSYIGYCPQFDALNDRLTPREHL  440 (566)
Q Consensus       362 l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~i~~v~q~~~l~~~~tv~e~l  440 (566)
                      |+|+||+|++|++++|+|+||||||||+++|+|.++|++|+|.++|.++.. .....++.++|++|++.+++.+|+.+| 
T Consensus         1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~-   79 (137)
T PF00005_consen    1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN-   79 (137)
T ss_dssp             EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred             CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence            689999999999999999999999999999999999999999999999876 445667899999999999999999998 


Q ss_pred             HHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCc----CcCChhHHHHHHHHHHHcCCCCEEEEeCCCC
Q psy7366         441 EFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREV----RTLSGGNKRKLSTAIALLGNPPLIFLDEPTS  506 (566)
Q Consensus       441 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----~~LSgGqkqrv~la~al~~~p~lllLDEPt~  506 (566)
                                  .....+.++++.+++.+..++.+    .+||+|||||++||+||+.+|++||||||||
T Consensus        80 ------------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~  137 (137)
T PF00005_consen   80 ------------ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN  137 (137)
T ss_dssp             ------------HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred             ------------cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence                        22345778888888766555555    9999999999999999999999999999997

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=99.98  E-value=1.2e-31  Score=276.98  Aligned_cols=180  Identities=18%  Similarity=0.198  Sum_probs=149.7

Q ss_pred             CCcchHHHHHhccccC------CC-ccCCCCCcc---cc----cccceeEEcCCC--CCCCCCCHHHHHHHHHHhc-CCC
Q psy7366           1 MGLTTTPKRVVTLLLT------TQ-KVPGSNPTI---DK----NLSYIGYCPQFD--ALNDRLTPREHLEFYSRVR-NVP   63 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~------~~-~~~~~~~~~---~~----~~~~ig~v~Q~~--~l~~~~tv~e~l~~~~~~~-~~~   63 (566)
                      .||||++|+++|++-+      |+ .+.+.+...   ..    ....|+||||++  .+++.+|+.+++....... +.+
T Consensus        44 sGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~  123 (326)
T PRK11022         44 SGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGN  123 (326)
T ss_pred             ChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCC
Confidence            5999999999999853      11 122221110   00    123699999998  4778899999887654432 455


Q ss_pred             hhhHHHHHHHHHHHcCCCc---ccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHh-C
Q psy7366          64 SVLLNTIVNESLNKFALGH---YSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS-E  139 (566)
Q Consensus        64 ~~~~~~~~~~~l~~~gl~~---~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~-~  139 (566)
                      ..+..+++.++++.+||..   .+++++.+|||||+|||+||+||+.+|+|||+||||++||+.++.++.++|+++++ .
T Consensus       124 ~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~  203 (326)
T PRK11022        124 KKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKE  203 (326)
T ss_pred             HHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc
Confidence            5667788999999999974   46889999999999999999999999999999999999999999999999999976 5


Q ss_pred             CCEEEEecCChhHHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy7366         140 GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK  180 (566)
Q Consensus       140 g~tviiisH~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~~  180 (566)
                      |.|+|+||||++++.++||||++|++|+|++.|+++++...
T Consensus       204 g~til~iTHdl~~~~~~adri~vm~~G~ive~g~~~~~~~~  244 (326)
T PRK11022        204 NMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIFRA  244 (326)
T ss_pred             CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhhC
Confidence            99999999999999999999999999999999999988653

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=99.98  E-value=1.4e-31  Score=263.86  Aligned_cols=179  Identities=21%  Similarity=0.214  Sum_probs=148.6

Q ss_pred             CCcchHHHHHhccccC----CC---ccCCCCCccc-ccccceeEEcCCCC--CCCCCCHHHHHHHHHHhcCCChhhHHHH
Q psy7366           1 MGLTTTPKRVVTLLLT----TQ---KVPGSNPTID-KNLSYIGYCPQFDA--LNDRLTPREHLEFYSRVRNVPSVLLNTI   70 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~----~~---~~~~~~~~~~-~~~~~ig~v~Q~~~--l~~~~tv~e~l~~~~~~~~~~~~~~~~~   70 (566)
                      .||||++|+++|++.+    ..   .+.+...... .....|+|++|++.  +++.+|+.+++.+.....+.......++
T Consensus        23 sGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~  102 (230)
T TIGR02770        23 SGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARAL  102 (230)
T ss_pred             CCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHHHHHHHHHHHcCccHHHHHHH
Confidence            5999999999999976    22   1333221111 11247999999985  4567899999977654443333445667


Q ss_pred             HHHHHHHcCCC---cccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEe
Q psy7366          71 VNESLNKFALG---HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILT  146 (566)
Q Consensus        71 ~~~~l~~~gl~---~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviii  146 (566)
                      +.++++.+|++   ...++++.+||||||||++||+||+.+|+||||||||++||+.+++.+.++|++++++ |+|||++
T Consensus       103 ~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~  182 (230)
T TIGR02770       103 ILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLI  182 (230)
T ss_pred             HHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence            89999999998   4678999999999999999999999999999999999999999999999999998764 8999999


Q ss_pred             cCChhHHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy7366         147 SHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  179 (566)
Q Consensus       147 sH~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~  179 (566)
                      ||+++++..+||||++|++|+++..|+++++..
T Consensus       183 sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  215 (230)
T TIGR02770       183 THDLGVVARIADEVAVMDDGRIVERGTVKEIFY  215 (230)
T ss_pred             eCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence            999999999999999999999999999888753

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=99.98  E-value=1.5e-31  Score=264.53  Aligned_cols=179  Identities=26%  Similarity=0.386  Sum_probs=153.5

Q ss_pred             CCcchHHHHHhccccCCCc---cCCCCCcc-cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQK---VPGSNPTI-DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLN   76 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~---~~~~~~~~-~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~   76 (566)
                      .||||++|++.|++.+...   +.+..... ......++|++|++.+++.+|+.||+.+.....+.+..+..+++.++++
T Consensus        36 ~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~  115 (235)
T cd03299          36 SGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAE  115 (235)
T ss_pred             CCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            5999999999999876552   33322111 1123579999999999989999999987655544555566678889999


Q ss_pred             HcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEecCChhHHHh
Q psy7366          77 KFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEA  155 (566)
Q Consensus        77 ~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiisH~~~~~~~  155 (566)
                      .+|+....++.+.+|||||+||++||+||+.+|++|||||||++||+.++++++++|+++..+ |.|||++||+++++.+
T Consensus       116 ~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~  195 (235)
T cd03299         116 MLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWA  195 (235)
T ss_pred             HcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHH
Confidence            999998899999999999999999999999999999999999999999999999999998665 9999999999999999


Q ss_pred             hcCEEEEEeCCEEEEecChhHHHh
Q psy7366         156 LCTKLTIMVNGQFTCLGSATHLKS  179 (566)
Q Consensus       156 ~~d~i~vl~~G~i~~~g~~~~~~~  179 (566)
                      +||||++|++|+++..|+++++..
T Consensus       196 ~~d~i~~l~~G~i~~~~~~~~~~~  219 (235)
T cd03299         196 LADKVAIMLNGKLIQVGKPEEVFK  219 (235)
T ss_pred             hCCEEEEEECCEEEEecCHHHHHh
Confidence            999999999999999998877643

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=99.98  E-value=6.4e-32  Score=263.20  Aligned_cols=168  Identities=23%  Similarity=0.294  Sum_probs=142.8

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCc----c-cccccceeEEcCCCCCCCCCCHHHHHHHHHH-hcCCChhhHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPT----I-DKNLSYIGYCPQFDALNDRLTPREHLEFYSR-VRNVPSVLLNTIV   71 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~----~-~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~-~~~~~~~~~~~~~   71 (566)
                      .||||++|+++|++.+..   .+.+....    . ......|+|+||++.+++.+|+.||+.++.. ..+.+..+..+++
T Consensus        37 sGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~  116 (213)
T cd03262          37 SGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERA  116 (213)
T ss_pred             CCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHH
Confidence            599999999999986544   12222111    0 1123579999999999999999999987642 2344445566788


Q ss_pred             HHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChh
Q psy7366          72 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME  151 (566)
Q Consensus        72 ~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~  151 (566)
                      .++++.+|++...++++.+|||||+||++||+||+.+|++|||||||++||+.+++++.++|+++++.|+|||++||+++
T Consensus       117 ~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~  196 (213)
T cd03262         117 LELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG  196 (213)
T ss_pred             HHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            99999999998889999999999999999999999999999999999999999999999999999777999999999999


Q ss_pred             HHHhhcCEEEEEeCCEE
Q psy7366         152 ECEALCTKLTIMVNGQF  168 (566)
Q Consensus       152 ~~~~~~d~i~vl~~G~i  168 (566)
                      ++.++||+|++|++|++
T Consensus       197 ~~~~~~d~i~~l~~g~i  213 (213)
T cd03262         197 FAREVADRVIFMDDGRI  213 (213)
T ss_pred             HHHHhCCEEEEEeCCcC
Confidence            99999999999999974

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.98  E-value=1.3e-31  Score=270.66  Aligned_cols=179  Identities=23%  Similarity=0.296  Sum_probs=150.6

Q ss_pred             CCcchHHHHHhccccCCCc---cCCCCCc--c---cccccceeEEcCCCCC-CCCCCHHHHHHHHHHhcCCChhhHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQK---VPGSNPT--I---DKNLSYIGYCPQFDAL-NDRLTPREHLEFYSRVRNVPSVLLNTIV   71 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~---~~~~~~~--~---~~~~~~ig~v~Q~~~l-~~~~tv~e~l~~~~~~~~~~~~~~~~~~   71 (566)
                      .||||++|++.|++.+.+.   +.+....  .   ......|||+||++.+ +...|+.+|+.+.....+.+..+..+++
T Consensus        38 sGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  117 (271)
T PRK13638         38 CGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRV  117 (271)
T ss_pred             CCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHH
Confidence            5999999999999876541   2232211  0   1123569999999864 3456899999886555555555566778


Q ss_pred             HHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChh
Q psy7366          72 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME  151 (566)
Q Consensus        72 ~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~  151 (566)
                      .++++.+|+....++++.+||||||||++||+||+.+|++|||||||++||+.++.++.++|++++++|.|||++||+++
T Consensus       118 ~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~  197 (271)
T PRK13638        118 DEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID  197 (271)
T ss_pred             HHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            89999999988889999999999999999999999999999999999999999999999999999777999999999999


Q ss_pred             HHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy7366         152 ECEALCTKLTIMVNGQFTCLGSATHLKS  179 (566)
Q Consensus       152 ~~~~~~d~i~vl~~G~i~~~g~~~~~~~  179 (566)
                      ++.++||+|++|++|+++..|+++++..
T Consensus       198 ~~~~~~d~i~~l~~G~i~~~g~~~~~~~  225 (271)
T PRK13638        198 LIYEISDAVYVLRQGQILTHGAPGEVFA  225 (271)
T ss_pred             HHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            9999999999999999999999887643

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=99.98  E-value=1.7e-31  Score=265.44  Aligned_cols=177  Identities=24%  Similarity=0.251  Sum_probs=148.6

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCccc----ccccceeEEcCCCCCCCCCCHHHHHHHHHHhc--------CCChh
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTID----KNLSYIGYCPQFDALNDRLTPREHLEFYSRVR--------NVPSV   65 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~~----~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~--------~~~~~   65 (566)
                      .||||++|++.|++.+..   .+.+......    .....|+|++|++.+++.+||.||+.+.....        +....
T Consensus        39 sGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~  118 (242)
T TIGR03411        39 AGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSA  118 (242)
T ss_pred             CCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHH
Confidence            599999999999987654   2222221111    11246999999999999999999998764311        11223


Q ss_pred             hHHHHHHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Q psy7366          66 LLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL  145 (566)
Q Consensus        66 ~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii  145 (566)
                      ...+++.++++.+|++...++.+.+|||||+||++||+||+.+|++|||||||++||+.++++++++|+++++ ++|||+
T Consensus       119 ~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~  197 (242)
T TIGR03411       119 EEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVV  197 (242)
T ss_pred             HHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEE
Confidence            4556789999999999888999999999999999999999999999999999999999999999999999865 789999


Q ss_pred             ecCChhHHHhhcCEEEEEeCCEEEEecChhHHH
Q psy7366         146 TSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  178 (566)
Q Consensus       146 isH~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~  178 (566)
                      +||+++++.++||||++|++|+++..|+++++.
T Consensus       198 ~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~  230 (242)
T TIGR03411       198 VEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQ  230 (242)
T ss_pred             EECCHHHHHHhCCEEEEEECCeEEeeCCHHHHh
Confidence            999999999999999999999999999888764

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>KOG0063|consensus

Probab=99.98  E-value=1.1e-30  Score=263.19  Aligned_cols=328  Identities=24%  Similarity=0.358  Sum_probs=236.7

Q ss_pred             HHHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCC
Q psy7366          70 IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN  149 (566)
Q Consensus        70 ~~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~  149 (566)
                      ...++.+.+.|+..++|.+.+||||+-||.+||++.+.+.++.++|||.+.||...+...-..|+.+..-..-||+|.||
T Consensus       193 ~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHD  272 (592)
T KOG0063|consen  193 NKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHD  272 (592)
T ss_pred             cHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEee
Confidence            45677788888888999999999999999999999999999999999999999999999999999998888999999999


Q ss_pred             hhHHHhhcCEEEEEeC-----CEEEEecChhHHHhhccCccccCCCCCCCCccchhHHHhhccCCCCccccCCCcccccc
Q psy7366         150 MEECEALCTKLTIMVN-----GQFTCLGSATHLKSKSMALPVSGNDLGRGDPVRSELSRALNDGSGSGIRNSARPEVSGF  224 (566)
Q Consensus       150 ~~~~~~~~d~i~vl~~-----G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (566)
                      ++.++-+.|-|..+..     |.++.--+..+.                                           .+.|
T Consensus       273 LsVLDylSDFiCcLYGvp~aYGVVT~Pfsvr~g-------------------------------------------iniF  309 (592)
T KOG0063|consen  273 LSVLDYLSDFICCLYGVPSAYGVVTMPFSVREG-------------------------------------------INIF  309 (592)
T ss_pred             chHHHhhhcceeEEecCCccceEEEeccchhhh-------------------------------------------hhhh
Confidence            9999999999999873     222211111000                                           0000


Q ss_pred             cccccCCccchhhhhhhHHHHHHHHHHHHhhhhheeeccCCeeeeeeccchhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7366         225 YNENIDGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNGTRLVAVNIWAWRIIGKNLTCMACHGALYSAINLSIEYKV  304 (566)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (566)
                      +...-                              .+.          ..-|+.  .                 +..++ 
T Consensus       310 l~g~i------------------------------pte----------n~rfR~--~-----------------~l~f~-  329 (592)
T KOG0063|consen  310 LDGLI------------------------------PTE----------NLRFRP--E-----------------CLVFL-  329 (592)
T ss_pred             hhccC------------------------------Ccc----------cccccc--h-----------------hheee-
Confidence            00000                              000          000000  0                 00000 


Q ss_pred             HhhhhcccccCCCCCCCcchhHHHHHHhhhcCCCCCCeEEEeeeEEEeCCcCCCcceeeeeeEEEeCC-----cEEEEEc
Q psy7366         305 FSRCFTRSNLHPVPVSLEEDDVRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRG-----ECFGLLG  379 (566)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~G-----e~~~l~G  379 (566)
                                   .......+ + .                 --.++|+   +.+.-+.++.|.|..|     |++..+|
T Consensus       330 -------------~~~~~~~e-k-~-----------------~~~y~Yp---~m~k~~g~F~L~i~~GefsdSeiivmlg  374 (592)
T KOG0063|consen  330 -------------ASDLSSED-R-R-----------------TGRYSYP---KMKKTVGDFCLCIKVGEFSDSEIIVMLG  374 (592)
T ss_pred             -------------eccccchh-h-h-----------------hheeccC---cceeeeeeEEEEEeecccCCceeEEEEc
Confidence                         00000000 0 0                 0012343   2344567788888877     5789999


Q ss_pred             CCCCcHHHHHHHHHCCCCCCccE-EEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHH
Q psy7366         380 LNGAGKTTTFKMLTGAIKPTSGN-AYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIV  458 (566)
Q Consensus       380 ~NGsGKSTLl~~i~G~~~~~~G~-i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~  458 (566)
                      .||.|||||+++++|.++|+.|. |-.             -.++|=||...--..-||++.+.-  .++.  .....+.+
T Consensus       375 EngtgkTTfi~mlag~~~pd~~~e~p~-------------lnVSykpqkispK~~~tvR~ll~~--kIr~--ay~~pqF~  437 (592)
T KOG0063|consen  375 ENGTGKTTFIRMLAGRLKPDEGGEIPV-------------LNVSYKPQKISPKREGTVRQLLHT--KIRD--AYMHPQFV  437 (592)
T ss_pred             cCCcchhHHHHHHhcCCCCCccCcccc-------------cceeccccccCccccchHHHHHHH--HhHh--hhcCHHHH
Confidence            99999999999999999999762 211             147888887543344588775432  1111  11112346


Q ss_pred             HHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEccCH
Q psy7366         459 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAV-SEGRCVILTSHNM  537 (566)
Q Consensus       459 ~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~-~~g~tvl~vsHd~  537 (566)
                      .+.++-+.+++..++.+.+|||||+|||++|.+|-..+++++.|||.+-||.+.+..--..+++.. ..++|-.+|.||+
T Consensus       438 ~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdf  517 (592)
T KOG0063|consen  438 NDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDF  517 (592)
T ss_pred             HhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHH
Confidence            677888888888999999999999999999999999999999999999999999999888888864 5588999999999


Q ss_pred             HHHHhhCCEEEEEEC
Q psy7366         538 EECEALCTKLTIMVN  552 (566)
Q Consensus       538 ~~~~~~~drv~~l~~  552 (566)
                      -.+.-++||+++...
T Consensus       518 ImaTYladrvivf~G  532 (592)
T KOG0063|consen  518 IMATYLADRVIVFEG  532 (592)
T ss_pred             HHHHhhcceeEEEec
Confidence            998889999998753

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=99.98  E-value=1.5e-31  Score=260.69  Aligned_cols=173  Identities=20%  Similarity=0.313  Sum_probs=144.0

Q ss_pred             CCcchHHHHHhccccCCCc---cCCCCCcc-cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQK---VPGSNPTI-DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLN   76 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~---~~~~~~~~-~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~   76 (566)
                      .||||++|+++|++.+.+.   +.+..... ......++|+||++.+++.+|+.||+.+.............+++.++++
T Consensus        35 sGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~  114 (213)
T TIGR01277        35 AGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQ  114 (213)
T ss_pred             CCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHH
Confidence            5999999999999876552   22221111 1223569999999999999999999986532211112234567889999


Q ss_pred             HcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEecCChhHHHh
Q psy7366          77 KFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEA  155 (566)
Q Consensus        77 ~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiisH~~~~~~~  155 (566)
                      .+|++...++.+.+||||||||++||+||+.+|++|||||||++||+.+++.+.++|++++++ |.|||++||+++++.+
T Consensus       115 ~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~  194 (213)
T TIGR01277       115 QVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARA  194 (213)
T ss_pred             HcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh
Confidence            999988889999999999999999999999999999999999999999999999999998764 8999999999999999


Q ss_pred             hcCEEEEEeCCEEEEecC
Q psy7366         156 LCTKLTIMVNGQFTCLGS  173 (566)
Q Consensus       156 ~~d~i~vl~~G~i~~~g~  173 (566)
                      +||++++|++|+++..|+
T Consensus       195 ~~d~v~~l~~g~i~~~~~  212 (213)
T TIGR01277       195 IASQIAVVSQGKIKVVSD  212 (213)
T ss_pred             hcCeEEEEECCeEEEecC
Confidence            999999999999998764

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=99.98  E-value=1.4e-31  Score=264.29  Aligned_cols=179  Identities=19%  Similarity=0.295  Sum_probs=149.1

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcc-cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI-DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLN   76 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~-~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~   76 (566)
                      .||||++|+++|++.+..   .+.+..... ......++|+||++.+++.+|+.||+.+.............+++.++++
T Consensus        36 sGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~  115 (232)
T PRK10771         36 AGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIAR  115 (232)
T ss_pred             CCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHH
Confidence            599999999999987654   133322111 1123569999999999999999999976532110112234567899999


Q ss_pred             HcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEecCChhHHHh
Q psy7366          77 KFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEA  155 (566)
Q Consensus        77 ~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiisH~~~~~~~  155 (566)
                      .+|++...++++.+||||||||++||+|++.+|++|||||||++||+.+++.+.++|+++.++ |.|||++||+++++.+
T Consensus       116 ~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~  195 (232)
T PRK10771        116 QMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAAR  195 (232)
T ss_pred             HcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHH
Confidence            999998899999999999999999999999999999999999999999999999999998654 8999999999999999


Q ss_pred             hcCEEEEEeCCEEEEecChhHHHh
Q psy7366         156 LCTKLTIMVNGQFTCLGSATHLKS  179 (566)
Q Consensus       156 ~~d~i~vl~~G~i~~~g~~~~~~~  179 (566)
                      +||||++|++|+++..|+++++..
T Consensus       196 ~~d~i~~l~~g~i~~~g~~~~~~~  219 (232)
T PRK10771        196 IAPRSLVVADGRIAWDGPTDELLS  219 (232)
T ss_pred             hCCEEEEEECCEEEEeCCHHHHHh
Confidence            999999999999999999887654

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.98  E-value=1.7e-31  Score=267.29  Aligned_cols=177  Identities=24%  Similarity=0.272  Sum_probs=147.3

Q ss_pred             CCcchHHHHHhccccC-------CC-ccCCCCCc-----ccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCC-Chhh
Q psy7366           1 MGLTTTPKRVVTLLLT-------TQ-KVPGSNPT-----IDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNV-PSVL   66 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~-------~~-~~~~~~~~-----~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~-~~~~   66 (566)
                      .||||++|+++|++.+       |+ .+.+....     .......|||++|++.++. +||+||+.+.....+. +...
T Consensus        44 sGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~  122 (254)
T PRK14273         44 CGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGTKDKKK  122 (254)
T ss_pred             CCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcCCCCHHH
Confidence            5999999999999875       33 12222111     0122457999999998885 8999999887654432 3344


Q ss_pred             HHHHHHHHHHHcCC----CcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q psy7366          67 LNTIVNESLNKFAL----GHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC  142 (566)
Q Consensus        67 ~~~~~~~~l~~~gl----~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~t  142 (566)
                      ..+++.++++.+|+    ....++++.+||||||||++||+||+.+|++|||||||++||+.++.++.++|++++ ++.|
T Consensus       123 ~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~t  201 (254)
T PRK14273        123 LDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-ESYT  201 (254)
T ss_pred             HHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-cCCE
Confidence            56778899999987    345688999999999999999999999999999999999999999999999999985 4799


Q ss_pred             EEEecCChhHHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy7366         143 VILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  179 (566)
Q Consensus       143 viiisH~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~  179 (566)
                      ||++||+++++.++||||++|++|+++..|+++++..
T Consensus       202 vii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  238 (254)
T PRK14273        202 IIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELFF  238 (254)
T ss_pred             EEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence            9999999999999999999999999999999888754

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=1.4e-31  Score=271.24  Aligned_cols=178  Identities=24%  Similarity=0.312  Sum_probs=152.3

Q ss_pred             CCcchHHHHHhccccCCCc---cCCCCCcc---cccccceeEEcCCCC-CCCCCCHHHHHHHHHHhcCCChhhHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQK---VPGSNPTI---DKNLSYIGYCPQFDA-LNDRLTPREHLEFYSRVRNVPSVLLNTIVNE   73 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~---~~~~~~~~---~~~~~~ig~v~Q~~~-l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~   73 (566)
                      .||||++|+++|++.+...   +.+.....   ......|||+||++. ++...||.||+.+.....+.+..+..+++.+
T Consensus        44 aGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~  123 (279)
T PRK13635         44 SGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQ  123 (279)
T ss_pred             CcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHH
Confidence            5999999999999976652   33322111   122357999999984 6677899999988765555566666778999


Q ss_pred             HHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEecCChhH
Q psy7366          74 SLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEE  152 (566)
Q Consensus        74 ~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiisH~~~~  152 (566)
                      +++.+||+...++.+.+||||||||++||+||+.+|++|||||||++||+.++.+++++|++++++ |.|||++||++++
T Consensus       124 ~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~  203 (279)
T PRK13635        124 ALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDE  203 (279)
T ss_pred             HHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHH
Confidence            999999998899999999999999999999999999999999999999999999999999999765 8999999999999


Q ss_pred             HHhhcCEEEEEeCCEEEEecChhHHHh
Q psy7366         153 CEALCTKLTIMVNGQFTCLGSATHLKS  179 (566)
Q Consensus       153 ~~~~~d~i~vl~~G~i~~~g~~~~~~~  179 (566)
                      +.. ||||++|++|++++.|+++++..
T Consensus       204 ~~~-~d~i~~l~~G~i~~~g~~~~~~~  229 (279)
T PRK13635        204 AAQ-ADRVIVMNKGEILEEGTPEEIFK  229 (279)
T ss_pred             HHc-CCEEEEEECCEEEEECCHHHHhc
Confidence            975 99999999999999999887654

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=99.97  E-value=2.1e-31  Score=275.51  Aligned_cols=180  Identities=20%  Similarity=0.258  Sum_probs=150.7

Q ss_pred             CCcchHHHHHhccccCC-----C-ccCCCCCcc---cc----cccceeEEcCCC--CCCCCCCHHHHHHHHHHhc-CCCh
Q psy7366           1 MGLTTTPKRVVTLLLTT-----Q-KVPGSNPTI---DK----NLSYIGYCPQFD--ALNDRLTPREHLEFYSRVR-NVPS   64 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~-----~-~~~~~~~~~---~~----~~~~ig~v~Q~~--~l~~~~tv~e~l~~~~~~~-~~~~   64 (566)
                      .||||++|+++|++-++     + .+.+.+...   ..    +...|+||||++  .+++.+|+.+++.+..... +.+.
T Consensus        53 sGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~  132 (330)
T PRK09473         53 SGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSK  132 (330)
T ss_pred             chHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCH
Confidence            59999999999999763     2 122221110   10    124699999998  6788999999997655443 3555


Q ss_pred             hhHHHHHHHHHHHcCCCc---ccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-C
Q psy7366          65 VLLNTIVNESLNKFALGH---YSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-G  140 (566)
Q Consensus        65 ~~~~~~~~~~l~~~gl~~---~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g  140 (566)
                      .+..+++.++++.+||+.   ..++++.+|||||+||++||+||+.+|++||+||||++||+.++.++.++|++++++ |
T Consensus       133 ~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g  212 (330)
T PRK09473        133 AEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFN  212 (330)
T ss_pred             HHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcC
Confidence            666778999999999975   247799999999999999999999999999999999999999999999999999765 9


Q ss_pred             CEEEEecCChhHHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy7366         141 RCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK  180 (566)
Q Consensus       141 ~tviiisH~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~~  180 (566)
                      .|+|+||||++++..+||||+||++|+|++.|+++++...
T Consensus       213 ~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~~~i~~~  252 (330)
T PRK09473        213 TAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDVFYQ  252 (330)
T ss_pred             CEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence            9999999999999999999999999999999999998654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	566
1vpl_A	256	Crystal Structure Of Abc Transporter Atp-binding Pr		3e-29
1z47_A	355	Structure Of The Atpase Subunit Cysa Of The Putativ		2e-20
2yyz_A	359	Crystal Structure Of Sugar Abc Transporter, Atp-Bin		5e-20
3gfo_A	275	Structure Of Cbio1 From Clostridium Perfringens: Pa		3e-18
1oxs_C	353	Crystal Structure Of Glcv, The Abc-Atpase Of The Gl		2e-17
1oxx_K	353	Crystal Structure Of Glcv, The Abc-Atpase Of The Gl		1e-16
1q12_A	381	Crystal Structure Of The Atp-bound E. Coli Malk Len		1e-16
1q1b_A	381	Crystal Structure Of E. Coli Malk In The Nucleotide		1e-16
2r6g_A	381	The Crystal Structure Of The E. Coli Maltose Transp		2e-16
3dhw_C	343	Crystal Structure Of Methionine Importer Metni Leng		4e-16
1g29_1	372	Malk Length = 372		4e-16
3tui_C	366	Inward Facing Conformations Of The Metni Methionine		6e-16
2it1_A	362	Structure Of Ph0203 Protein From Pyrococcus Horikos		6e-16
3d31_A	348	Modbc From Methanosarcina Acetivorans Length = 348		7e-16
1vci_A	373	Crystal Structure Of The Atp-binding Cassette Of Mu		2e-15
1v43_A	372	Crystal Structure Of Atpase Subunit Of Abc Sugar Tr		3e-15
2yz2_A	266	Crystal Structure Of The Abc Transporter In The Cob		4e-15
4hlu_A	268	Structure Of The Ecfa-a' Heterodimer Bound To Adp L		4e-15
2onk_A	240	Abc Transporter Modbc In Complex With Its Binding P		5e-15
3tuj_C	366	Inward Facing Conformations Of The Metni Methionine		5e-15
2nq2_C	253	An Inward-Facing Conformation Of A Putative Metal-C		1e-14
2d62_A	375	Crystal Structure Of Multiple Sugar Binding Transpo		2e-14
1g6h_A	257	Crystal Structure Of The Adp Conformation Of Mj1267		1e-13
1gaj_A	257	Crystal Structure Of A Nucleotide-Free Atp-Binding		4e-13
1g9x_A	257	Characterization Of The Twinning Structure Of Mj126		4e-13
3b5x_A	582	Crystal Structure Of Msba From Vibrio Cholerae Leng		1e-11
2hyd_A	578	Multidrug Abc Transporter Sav1866 Length = 578		2e-11
4hlu_D	268	Structure Of The Ecfa-a' Heterodimer Bound To Adp L		3e-11
1f3o_A	235	Crystal Structure Of Mj0796 Atp-Binding Cassette Le		5e-11
2pcj_A	224	Crystal Structure Of Abc Transporter (Aq_297) From		5e-11
1l2t_A	235	Dimeric Structure Of Mj0796, A Bacterial Abc Transp		5e-11
3g60_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		7e-11
3g5u_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		7e-11
3tif_A	235	Dimeric Structure Of A Post-Hydrolysis State Of The		9e-11
2ihy_A	279	Structure Of The Staphylococcus Aureus Putative Atp		1e-10
1ji0_A	240	Crystal Structure Analysis Of The Abc Transporter F		2e-10
4ayw_A	619	Structure Of The Human Mitochondrial Abc Transporte		2e-10
4ayt_A	595	Structure Of The Human Mitochondrial Abc Transporte		3e-10
1yqt_A	538	Rnase-L Inhibitor Length = 538		6e-10
3fvq_A	359	Crystal Structure Of The Nucleotide Binding Domain		6e-10
2pmk_A	243	Crystal Structures Of An Isolated Abc-Atpase In Com		9e-10
1mv5_A	243	Crystal Structure Of Lmra Atp-Binding Domain Length		9e-10
1mt0_A	241	Atp-Binding Domain Of Haemolysin B From Escherichia		9e-10
2ff7_A	247	The Abc-Atpase Of The Abc-Transporter Hlyb In The A		9e-10
3nh6_A	306	Nucleotide Binding Domain Of Human Abcb6 (Apo Struc		1e-09
4f4c_A	1321	The Crystal Structure Of The Multi-Drug Transporter		1e-09
2pzg_A	241	Minimal Human Cftr First Nucleotide Binding Domain		1e-09
3j15_B	593	Model Of Ribosome-Bound Archaeal Pelota And Abce1 L		1e-09
3b5j_A	243	Crystal Structures Of The S504a Mutant Of An Isolat		1e-09
3bk7_A	607	Structure Of The Complete Abce1RNAASE-L Inhibitor P		2e-09
2pze_A	229	Minimal Human Cftr First Nucleotide Binding Domain		2e-09
2ffb_A	247	The Crystal Structure Of The Hlyb-Nbd E631q Mutant		2e-09
2pjz_A	263	The Crystal Structure Of Putative Cobalt Transport		5e-09
2pzf_A	228	Minimal Human Cftr First Nucleotide Binding Domain		5e-09
3qf4_A	587	Crystal Structure Of A Heterodimeric Abc Transporte		6e-09
3ozx_A	538	Crystal Structure Of Abce1 Of Sulfolubus Solfataric		1e-08
1xef_A	241	Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI		1e-08
2ffa_A	247	Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr		1e-08
3c41_J	242	Abc Protein Artp In Complex With Amp-PnpMG2+ Length		2e-08
2olj_A	263	Abc Protein Artp In Complex With AdpMG2+ Length = 2		2e-08
2bbo_A	291	Human Nbd1 With Phe508 Length = 291		2e-08
1xmi_A	291	Crystal Structure Of Human F508a Nbd1 Domain With A		6e-08
1xmj_A	290	Crystal Structure Of Human Deltaf508 Human Nbd1 Dom		6e-08
4g1u_C	266	X-Ray Structure Of The Bacterial Heme Transporter H		6e-08
3b5y_A	582	Crystal Structure Of Msba From Salmonella Typhimuri		9e-08
3j16_B	608	Models Of Ribosome-Bound Dom34p And Rli1p And Their		2e-07
2bbs_A	290	Human Deltaf508 Nbd1 With Three Solubilizing Mutati		2e-07
2bbt_A	290	Human Deltaf508 Nbd1 With Two Solublizing Mutations		2e-07
3b5w_A	582	Crystal Structure Of Eschericia Coli Msba Length =		2e-07
2ixf_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		3e-07
3qf4_B	598	Crystal Structure Of A Heterodimeric Abc Transporte		7e-07
1r0z_A	286	Phosphorylated Cystic Fibrosis Transmembrane Conduc		7e-07
1sgw_A	214	Putative Abc Transporter (Atp-Binding Protein) From		8e-07
1q3h_A	286	Mouse Cftr Nbd1 With Amp.Pnp Length = 286		8e-07
2ghi_A	260	Crystal Structure Of Plasmodium Yoelii Multidrug Re		4e-06
2ixe_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		5e-06
1b0u_A	262	Atp-Binding Subunit Of The Histidine Permease From		7e-06
1b0u_A	262	Atp-Binding Subunit Of The Histidine Permease From		7e-06
3si7_A	285	The Crystal Structure Of The Nbd1 Domain Of The Mou		7e-06
2cbz_A	237	Structure Of The Human Multidrug Resistance Protein		7e-06
1xfa_A	283	Structure Of Nbd1 From Murine Cftr- F508r Mutant Le		9e-06
1xf9_A	283	Structure Of Nbd1 From Murine Cftr- F508s Mutant Le		9e-06
4fwi_B	334	Crystal Structure Of The Nucleotide-binding Domain		2e-05
2ixg_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		1e-04
3qku_A	359	Mre11 Rad50 Binding Domain In Complex With Rad50 An		1e-04
3qku_A	359	Mre11 Rad50 Binding Domain In Complex With Rad50 An		1e-04
3qkt_A	339	Rad50 Abc-Atpase With Adjacent Coiled-Coil Region I		2e-04
3qkt_A	339	Rad50 Abc-Atpase With Adjacent Coiled-Coil Region I		2e-04
4dbl_C	249	Crystal Structure Of E159q Mutant Of Btucdf Length		3e-04
1ii8_B	174	Crystal Structure Of The P. Furiosus Rad50 Atpase D		5e-04
1ii8_B	174	Crystal Structure Of The P. Furiosus Rad50 Atpase D		5e-04
1f2t_B	148	Crystal Structure Of Atp-free Rad50 Abc-atpase Leng		5e-04
1f2t_B	148	Crystal Structure Of Atp-free Rad50 Abc-atpase Leng		5e-04
3qkr_B	179	Mre11 Rad50 Binding Domain Bound To Rad50 Length =		5e-04
3qkr_B	179	Mre11 Rad50 Binding Domain Bound To Rad50 Length =		5e-04
3pih_A	916	T. Maritima Uvra In Complex With Fluorescein-Modifi		5e-04
3pih_A	916	T. Maritima Uvra In Complex With Fluorescein-Modifi		5e-04
4fi3_C	249	Structure Of Vitamin B12 Transporter Btucd-F In A N		5e-04
2iwh_A	986	Structure Of Yeast Elongation Factor 3 In Complex W		6e-04
1l7v_C	249	Bacterial Abc Transporter Involved In B12 Uptake Le		6e-04
2qi9_C	249	Abc-Transporter Btucd In Complex With Its Periplasm		7e-04
2ix8_A	976	Model For Eef3 Bound To An 80s Ribosome Length = 97		7e-04
2iw3_A	986	Elongation Factor 3 In Complex With Adp Length = 98		7e-04

>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256

Iteration: 1
 Score =  126 bits (316), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 75/210 (35%), Positives = 108/210 (51%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDL 416
           G K  +  ISF +  GE FGL+G NGAGKTTT ++++  IKP+SG   V   ++ +    
Sbjct: 26  GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHE 85
Query: 417 VRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVR 476
           VR  I Y P+       +   E+L F +      S  +  +V  +     LG      V 
Sbjct: 86  VRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVS 145
Query: 477 TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN 536
           T S G  RKL  A AL+ NP L  LDEPTSG+D    R +   +++A  EG  ++++SHN
Sbjct: 146 TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHN 205
Query: 537 MEECEALCTKLTIMVNGQFTCLGSATHLKS 566
           M E E LC ++ ++ NG     G+   LK 
Sbjct: 206 MLEVEFLCDRIALIHNGTIVETGTVEELKE 235

>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355

Iteration: 1
 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 107/216 (49%), Gaps = 5/216 (2%)
Query: 350 KIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 409
           KIY    G   +V  +SF +  GE  GLLG +G+GKTT  +++ G  +PT G+ ++    
Sbjct: 22  KIYP---GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKR 78
Query: 410 IRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGH 469
           + D     R+ +G   Q  AL   +T  +++ F  R + VP   ++  V E L    L  
Sbjct: 79  VTDLPPQKRN-VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLES 137
Query: 470 YSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GR 528
           Y++R    LSGG +++++ A AL   P ++  DEP + +D   RR L T + +   E G 
Sbjct: 138 YANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGV 197
Query: 529 CVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
             +  +H+ EE   +  ++ ++  G     G+   +
Sbjct: 198 TSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEV 233

>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359

Iteration: 1
 Score = 95.9 bits (237), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 99/209 (47%), Gaps = 2/209 (0%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDL 416
           G   AV+ +SF V  GE   LLG +G GKTTT  ML G  KPTSG  Y  +  + D    
Sbjct: 14  GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK 73
Query: 417 VRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVR 476
            R  +G   Q  AL   +T  E++ F  R R +    +   V E   K  + +  DR+  
Sbjct: 74  YRE-VGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPT 132
Query: 477 TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSH 535
            LSGG +++++ A AL+  P ++  DEP S +D   R  +   I+    E G   +  +H
Sbjct: 133 QLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTH 192
Query: 536 NMEECEALCTKLTIMVNGQFTCLGSATHL 564
           +  E   + +++ +   G+    G+   +
Sbjct: 193 DQAEAMTMASRIAVFNQGKLVQYGTPDEV 221

>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275

Iteration: 1
 Score = 90.1 bits (222), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 104/219 (47%), Gaps = 8/219 (3%)
Query: 352 YANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI- 410
           Y  S GT  A+  I+  + RGE   +LG NG GK+T F+   G +KP+SG     N  I 
Sbjct: 15  YNYSDGTH-ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPID 73
Query: 411 --RDSMDLVRSYIGYCPQFDALNDRLTPR--EHLEFYSRVRNVPSVLLNTIVNESLNKFA 466
             R  +  +R  IG   Q D  N   +    + + F +    +P   +   V+ +L +  
Sbjct: 74  YSRKGIMKLRESIGIVFQ-DPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTG 132
Query: 467 LGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDP-GARRFLWTCIERAVS 525
           + H  D+    LS G K++++ A  L+  P ++ LDEPT+G+DP G    +   +E    
Sbjct: 133 IEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKE 192
Query: 526 EGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
            G  +I+ +H+++     C  + +M  G+    G+   +
Sbjct: 193 LGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEV 231

>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 111/227 (48%), Gaps = 7/227 (3%)
Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
           ++VK + K++   KG   A++ ++  +  GE FG+LG +GAGKTT  +++ G   P++G 
Sbjct: 4   IIVKNVSKVF--KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 403 AYVMNHSIRDSMDLV----RSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIV 458
            Y  +  +  +  L+       IG   Q  AL   LT  E++ F      +    +   V
Sbjct: 62  LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV 121
Query: 459 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT 518
            E      + H  +   R LSGG +++++ A AL+ +P L+ LDEP S +D   R     
Sbjct: 122 EEVAKILDIHHVLNHFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARA 181
Query: 519 CIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
            ++   S  G  +++ SH+  +  A+  ++ ++V G+   +G    L
Sbjct: 182 LVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228

>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353

Iteration: 1
 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 110/227 (48%), Gaps = 7/227 (3%)
Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
           ++VK + K++   KG   A++ ++  +  GE FG+LG +GAGKTT  +++ G   P++G 
Sbjct: 4   IIVKNVSKVF--KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 403 AYVMNHSIRDSMDLV----RSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIV 458
            Y  +  +  +  L+       IG   Q  AL   LT  E++ F      +    +   V
Sbjct: 62  LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV 121
Query: 459 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT 518
            E      + H  +   R LSG  +++++ A AL+ +P L+ LDEP S +D   R     
Sbjct: 122 EEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARA 181
Query: 519 CIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
            ++   S  G  +++ SH+  +  A+  ++ ++V G+   +G    L
Sbjct: 182 LVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228

>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381

Iteration: 1
 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 94/201 (46%), Gaps = 2/201 (0%)
Query: 365 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYC 424
           I+  +  GE    +G +G GK+T  +M+ G    TSG+ ++    + D+    R  +G  
Sbjct: 22  INLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERG-VGMV 80
Query: 425 PQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKR 484
            Q  AL   L+  E++ F  ++      ++N  VN+      L H  DR+ + LSGG ++
Sbjct: 81  FQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQ 140
Query: 485 KLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEAL 543
           +++    L+  P +  LDEP S +D   R  +   I R     GR +I  +H+  E   L
Sbjct: 141 RVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTL 200
Query: 544 CTKLTIMVNGQFTCLGSATHL 564
             K+ ++  G+   +G    L
Sbjct: 201 ADKIVVLDAGRVAQVGKPLEL 221

>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381

Iteration: 1
 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 94/201 (46%), Gaps = 2/201 (0%)
Query: 365 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYC 424
           I+  +  GE    +G +G GK+T  +M+ G    TSG+ ++    + D+    R  +G  
Sbjct: 22  INLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERG-VGMV 80
Query: 425 PQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKR 484
            Q  AL   L+  E++ F  ++      ++N  VN+      L H  DR+ + LSGG ++
Sbjct: 81  FQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQ 140
Query: 485 KLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEAL 543
           +++    L+  P +  LDEP S +D   R  +   I R     GR +I  +H+  E   L
Sbjct: 141 RVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTL 200
Query: 544 CTKLTIMVNGQFTCLGSATHL 564
             K+ ++  G+   +G    L
Sbjct: 201 ADKIVVLDAGRVAQVGKPLEL 221

>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 94/201 (46%), Gaps = 2/201 (0%)
Query: 365 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYC 424
           I+  +  GE    +G +G GK+T  +M+ G    TSG+ ++    + D+    R  +G  
Sbjct: 22  INLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERG-VGMV 80
Query: 425 PQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKR 484
            Q  AL   L+  E++ F  ++      ++N  VN+      L H  DR+ + LSGG ++
Sbjct: 81  FQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQ 140
Query: 485 KLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEAL 543
           +++    L+  P +  LD+P S +D   R  +   I R     GR +I  +H+  E   L
Sbjct: 141 RVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTL 200
Query: 544 CTKLTIMVNGQFTCLGSATHL 564
             K+ ++  G+   +G    L
Sbjct: 201 ADKIVVLDAGRVAQVGKPLEL 221

>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343

Iteration: 1
 Score = 83.2 bits (204), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 101/212 (47%), Gaps = 7/212 (3%)
Query: 350 KIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 409
           K++     T  A+N +S  V  G+ +G++G +GAGK+T  + +    +PT G+  V    
Sbjct: 9   KVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQE 68
Query: 410 I----RDSMDLVRSYIGYCPQ-FDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNK 464
           +       +   R  IG   Q F+ L+ R T   ++     + N P   +   V E L+ 
Sbjct: 69  LTTLSESELTKARRQIGMIFQHFNLLSSR-TVFGNVALPLELDNTPKDEVKRRVTELLSL 127
Query: 465 FALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAV 524
             LG   D     LSGG K++++ A AL  NP ++  DE TS +DP   R +   ++   
Sbjct: 128 VGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDIN 187
Query: 525 SE-GRCVILTSHNMEECEALCTKLTIMVNGQF 555
              G  ++L +H M+  + +C  + ++ NG+ 
Sbjct: 188 RRLGLTILLITHEMDVVKRICDCVAVISNGEL 219

>pdb|1G29|1 Chain 1, Malk Length = 372

Iteration: 1
 Score = 82.8 bits (203), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 101/219 (46%), Gaps = 16/219 (7%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD---- 412
           G   AV ++S  V  GE   LLG +G GKTTT +M+ G  +P+ G  Y+ +  + D    
Sbjct: 14  GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKG 73
Query: 413 ------SMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFA 466
                   D+   +  Y     AL   +T  +++ F  ++R VP   ++  V E      
Sbjct: 74  IFVPPKDRDIAMVFQSY-----ALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLG 128
Query: 467 LGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE 526
           L    +R+ R LSGG +++++   A++  P +  +DEP S +D   R  +   +++   +
Sbjct: 129 LTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQ 188
Query: 527 -GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
            G   I  +H+  E   +  ++ +M  G    +GS   +
Sbjct: 189 LGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227

>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366

Iteration: 1
 Score = 82.4 bits (202), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 106/224 (47%), Gaps = 7/224 (3%)
Query: 338 DSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK 397
           D   ++ +  + K++     T  A+N +S  V  G+ +G++G +GAGK+T  + +    +
Sbjct: 20  DDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER 79
Query: 398 PTSGNAYVMNHSI----RDSMDLVRSYIGYCPQ-FDALNDRLTPREHLEFYSRVRNVPSV 452
           PT G+  V    +       +   R  IG   Q F+ L+ R T   ++     + N P  
Sbjct: 80  PTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSR-TVFGNVALPLELDNTPKD 138
Query: 453 LLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGA 512
            +   V E L+   LG   D     LSGG K++++ A AL  NP ++  D+ TS +DP  
Sbjct: 139 EVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPAT 198
Query: 513 RRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQF 555
            R +   ++      G  ++L +H M+  + +C  + ++ NG+ 
Sbjct: 199 TRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGEL 242

>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362

Iteration: 1
 Score = 82.4 bits (202), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 98/205 (47%), Gaps = 2/205 (0%)
Query: 361 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSY 420
           A+N I+  +  GE   LLG +G+GK+T    + G  KPTSG  Y     + +     R+ 
Sbjct: 18  ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRN- 76
Query: 421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSG 480
           +G   Q  AL   +T  +++ F   +R  P   ++  V E      +    +R    LSG
Sbjct: 77  VGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSG 136
Query: 481 GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEE 539
           G +++++ A AL+  P ++ LDEP S +D   R  +   ++R   E G   +  +H+  E
Sbjct: 137 GQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAE 196
Query: 540 CEALCTKLTIMVNGQFTCLGSATHL 564
             A+  ++ ++  G+   +G+   +
Sbjct: 197 ALAMADRIAVIREGEILQVGTPDEV 221

>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348

Iteration: 1
 Score = 82.4 bits (202), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 102/207 (49%), Gaps = 9/207 (4%)
Query: 361 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSY 420
           +++ +S  V  GE F +LG  GAGKT   +++ G   P SG   +    + D +   +  
Sbjct: 15  SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTD-LSPEKHD 73
Query: 421 IGYCPQFDALNDRLTPREHLEFYSRVRNV--PSVLLNTIVNESLNKFALGHYSDREVRTL 478
           I +  Q  +L   +  +++LEF  R++ +  P  +L+T          + H  DR   TL
Sbjct: 74  IAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTA-----RDLKIEHLLDRNPLTL 128
Query: 479 SGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL-TSHNM 537
           SGG +++++ A AL+ NP ++ LDEP S +DP  +      +     + +  +L  +H+ 
Sbjct: 129 SGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQ 188
Query: 538 EECEALCTKLTIMVNGQFTCLGSATHL 564
            E   +  ++ ++++G+   +G    +
Sbjct: 189 TEARIMADRIAVVMDGKLIQVGKPEEI 215

>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 100/205 (48%), Gaps = 2/205 (0%)
Query: 361 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSY 420
           AVN+++  +  GE   LLG +G GKTTT +M+ G  +PT G  Y  +  +       R+ 
Sbjct: 27  AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRN- 85
Query: 421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSG 480
           I    Q  A+   +T  E++ F  +++  P   ++  V  +     +    +R    LSG
Sbjct: 86  ISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSG 145
Query: 481 GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC-VILTSHNMEE 539
           G +++++ A A++  P ++ +DEP S +D   R  +   I++   + +   I  +H+  E
Sbjct: 146 GQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVE 205
Query: 540 CEALCTKLTIMVNGQFTCLGSATHL 564
              +  ++ +M  GQ   +GS T +
Sbjct: 206 AMTMGDRIAVMNRGQLLQIGSPTEV 230

>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372

Iteration: 1
 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 100/205 (48%), Gaps = 2/205 (0%)
Query: 361 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSY 420
           AVN+++  +  GE   LLG +G GKTTT +M+ G  +PT G  Y  +  +       R+ 
Sbjct: 26  AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRN- 84
Query: 421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSG 480
           I    Q  A+   +T  E++ F  +++  P   ++  V  +     +    +R    LSG
Sbjct: 85  ISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSG 144
Query: 481 GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC-VILTSHNMEE 539
           G +++++ A A++  P ++ +DEP S +D   R  +   I++   + +   I  +H+  E
Sbjct: 145 GQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVE 204
Query: 540 CEALCTKLTIMVNGQFTCLGSATHL 564
              +  ++ +M  GQ   +GS T +
Sbjct: 205 AMTMGDRIAVMNRGQLLQIGSPTEV 229

>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266

Iteration: 1
 Score = 79.7 bits (195), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 97/199 (48%), Gaps = 6/199 (3%)
Query: 359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 418
           K A+  +S  +  GEC  + G  G+GK+T  +++ G I+PTSG+  V+    R     +R
Sbjct: 20  KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGD--VLYDGERKKGYEIR 77
Query: 419 SYIGYCPQFDALNDRLTPREHLEFYSRVRNV-PSVLLNTIVNESLNKFALGH--YSDREV 475
             IG   Q+   +     R   E    V+N  P      +V +++    L    + DR  
Sbjct: 78  RNIGIAFQYPE-DQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVP 136
Query: 476 RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 535
             LSGG KR+++ A  ++  P ++ LDEP  G+D   +  L   +E+  + G+ VIL SH
Sbjct: 137 FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISH 196
Query: 536 NMEECEALCTKLTIMVNGQ 554
           ++E       ++ ++  G+
Sbjct: 197 DIETVINHVDRVVVLEKGK 215

>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268

Iteration: 1
 Score = 79.7 bits (195), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 97/199 (48%), Gaps = 6/199 (3%)
Query: 359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 418
           K A+  +S  +  GEC  + G  G+GK+T  +++ G I+PTSG+  V+    R     +R
Sbjct: 22  KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGD--VLYDGERKKGYEIR 79
Query: 419 SYIGYCPQFDALNDRLTPREHLEFYSRVRNV-PSVLLNTIVNESLNKFALGH--YSDREV 475
             IG   Q+   +     R   E    V+N  P      +V +++    L    + DR  
Sbjct: 80  RNIGIAFQYPE-DQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVP 138
Query: 476 RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 535
             LSGG KR+++ A  ++  P ++ LDEP  G+D   +  L   +E+  + G+ VIL SH
Sbjct: 139 FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISH 198
Query: 536 NMEECEALCTKLTIMVNGQ 554
           ++E       ++ ++  G+
Sbjct: 199 DIETVINHVDRVVVLEKGK 217

>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240

Iteration: 1
 Score = 79.3 bits (194), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 97/207 (46%), Gaps = 13/207 (6%)
Query: 365 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYC 424
           + F +GR  C  LLG  GAGK+   +++ G +KP  G    +N +    +   R  IG+ 
Sbjct: 18  VDFEMGRDYCV-LLGPTGAGKSVFLELIAGIVKPDRGEVR-LNGADITPLPPERRGIGFV 75
Query: 425 PQFDALNDRLTPREHLEFYSRV----RNVPSVLLNTIVNESLNKFALGHYSDREVRTLSG 480
           PQ  AL        HL  Y  +    RNV  V  +  V E   K  + H  DR+   LSG
Sbjct: 76  PQDYALF------PHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSG 129
Query: 481 GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL-TSHNMEE 539
           G +++++ A AL+  P L+ LDEP S +D   +  L   +     E    IL  +H++ E
Sbjct: 130 GERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIE 189
Query: 540 CEALCTKLTIMVNGQFTCLGSATHLKS 566
              L  ++ +M+NG+    G    L S
Sbjct: 190 AAMLADEVAVMLNGRIVEKGKLKELFS 216

>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366

Iteration: 1
 Score = 79.3 bits (194), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 104/224 (46%), Gaps = 7/224 (3%)
Query: 338 DSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK 397
           D    + +  + K++     T  A+N +S  V  G+ +G++G +GAGK+T  + +    +
Sbjct: 20  DDKHXIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER 79
Query: 398 PTSGNAYVMNHSI----RDSMDLVRSYIGYCPQ-FDALNDRLTPREHLEFYSRVRNVPSV 452
           PT G+  V    +       +   R  IG   Q F+ L+ R T   ++     + N P  
Sbjct: 80  PTEGSVLVDGQELTTLSESELTKARRQIGXIFQHFNLLSSR-TVFGNVALPLELDNTPKD 138
Query: 453 LLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGA 512
            +   V E L+   LG   D     LSGG K++++ A AL  NP ++  D+ TS +DP  
Sbjct: 139 EVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPAT 198
Query: 513 RRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQF 555
            R +   ++      G  ++L +H  +  + +C  + ++ NG+ 
Sbjct: 199 TRSILELLKDINRRLGLTILLITHEXDVVKRICDCVAVISNGEL 242

>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 94/201 (46%), Gaps = 26/201 (12%)
Query: 363 NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIG 422
            Q++F + +G+   +LG NG GK+T   +L G  +P  G   V               IG
Sbjct: 22  QQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQS------------IG 69
Query: 423 YCPQF-------DALNDRLTPRE-HLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDRE 474
           + PQF         L+  L  R  H+  +++    P      +  ++L+   L H + RE
Sbjct: 70  FVPQFFSSPFAYSVLDIVLMGRSTHINTFAK----PKSHDYQVAMQALDYLNLTHLAKRE 125
Query: 475 VRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT-CIERAVSEGRCVILT 533
             +LSGG ++ +  A A+     LI LDEPTS +D   +  + +  I+ A S+   V+ T
Sbjct: 126 FTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFT 185
Query: 534 SHNMEECEALCTKLTIMVNGQ 554
           +H   +  A+  K T+++N Q
Sbjct: 186 THQPNQVVAIANK-TLLLNKQ 205

>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 96/216 (44%), Gaps = 10/216 (4%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDL 416
           G   AV  +S  +  GE   LLG +G GKTTT + + G  +PT G  Y+ ++ + D    
Sbjct: 17  GDVTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKG 76
Query: 417 V-----RSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYS 471
           V        +    Q  AL    T  +++ F  ++R VP   ++  V E      L    
Sbjct: 77  VFVPPKERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGLTELL 136
Query: 472 DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR---RFLWTCIERAVSEGR 528
           +R+ R LSGG +++++   A++  P +   DEP S +D   R   R     ++R +  G 
Sbjct: 137 NRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQL--GV 194
Query: 529 CVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
             I  +H+  E      ++ +   G+   +G+   +
Sbjct: 195 TTIYVTHDQVEAXTXGDRIAVXNKGELQQVGTPDEV 230

>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/250 (24%), Positives = 104/250 (41%), Gaps = 45/250 (18%)
Query: 338 DSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK 397
           D+ ++L  + + K +   K    A++ +S  V +G+   ++G NG+GK+T   ++TG +K
Sbjct: 3   DTMEILRTENIVKYFGEFK----ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK 58
Query: 398 PTSGNAYVMNHSIRDS-------MDLVRSY----------------IG-YCPQFDALN-- 431
              G  Y  N  I +          +VR++                IG  CP    LN  
Sbjct: 59  ADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSL 118
Query: 432 --DRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTA 489
              +  P+E  E   +   +            L    L H  DR+   LSGG  + +   
Sbjct: 119 FYKKWIPKEE-EMVEKAFKI------------LEFLKLSHLYDRKAGELSGGQMKLVEIG 165
Query: 490 IALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTI 549
            AL+ NP +I +DEP +G+ PG    ++  +    ++G   ++  H ++        L +
Sbjct: 166 RALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYV 225
Query: 550 MVNGQFTCLG 559
           M NGQ    G
Sbjct: 226 MFNGQIIAEG 235

>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257

Iteration: 1
 Score = 73.2 bits (178), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 104/241 (43%), Gaps = 27/241 (11%)
Query: 338 DSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK 397
           D+ ++L  + + K +   K    A++ +S  V +G+   ++G NG+GK+T   ++TG +K
Sbjct: 3   DTMEILRTENIVKYFGEFK----ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK 58
Query: 398 PTSGNAYVMNHSIRDS-------MDLVRSYIGYCPQ------------FDALNDRLTPRE 438
              G  Y  N  I +          +VR++    PQ               +N   +P  
Sbjct: 59  ADEGRVYFENKDITNKEPAELYHYGIVRTF--QTPQPLKEMTVLENLLIGEINPGESPLN 116
Query: 439 HLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPL 498
            L FY +       ++     + L    L H  DR+   LSGG  + +    AL+ NP +
Sbjct: 117 SL-FYKKWIPKEEEMVEKAF-KILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKM 174
Query: 499 IFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCL 558
           I +D+P +G+ PG    ++  +    ++G   ++  H ++        L +M NGQ    
Sbjct: 175 IVMDQPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAE 234
Query: 559 G 559
           G
Sbjct: 235 G 235

>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257

Iteration: 1
 Score = 73.2 bits (178), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 104/241 (43%), Gaps = 27/241 (11%)
Query: 338 DSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK 397
           D+ ++L  + + K +   K    A++ +S  V +G+   ++G NG+GK+T   ++TG +K
Sbjct: 3   DTMEILRTENIVKYFGEFK----ALDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLK 58
Query: 398 PTSGNAYVMNHSIRDS-------MDLVRSYIGYCPQ------------FDALNDRLTPRE 438
              G  Y  N  I +          +VR++    PQ               +N   +P  
Sbjct: 59  ADEGRVYFENKDITNKEPAELYHYGIVRTF--QTPQPLKEMTVLENLLIGEINPGESPLN 116
Query: 439 HLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPL 498
            L FY +       ++     + L    L H  DR+   LSGG  + +    AL+ NP +
Sbjct: 117 SL-FYKKWIPKEEEMVEKAF-KILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKM 174
Query: 499 IFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCL 558
           I +DEP +G+ PG    ++  +    ++G   ++  H ++        L +M NGQ    
Sbjct: 175 IVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAE 234
Query: 559 G 559
           G
Sbjct: 235 G 235

>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 96/203 (47%), Gaps = 35/203 (17%)
Query: 359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS--MDL 416
           KPA++ +SF + +G+   L+G +G+GK+T   + T      SG+  +  H +RD    +L
Sbjct: 356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNL 415
Query: 417 VRSYIGYCPQFDALNDRLT-----------PREHLEFYSR-------VRNVPSVLLNTIV 458
            R +          ND +             RE +E  +R       + N+P   L+T++
Sbjct: 416 RRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQG-LDTVI 474
Query: 459 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT 518
            E+               +LSGG +++++ A ALL + P++ LDE TS +D  + R +  
Sbjct: 475 GENGT-------------SLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQA 521
Query: 519 CIERAVSEGRCVILTSHNMEECE 541
            ++  + + + V++ +H +   E
Sbjct: 522 ALDE-LQKNKTVLVIAHRLSTIE 543

>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 100/222 (45%), Gaps = 31/222 (13%)
Query: 360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMD-LVR 418
           P +  I+  + +GE    +G++G GK+T   ++      TSG   +  H+I+D +   +R
Sbjct: 355 PILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLR 414
Query: 419 SYIGYCPQFDAL-NDRL-----------TPREHLEFYSRVRNVPSVLLNTIVNESLNKFA 466
           + IG   Q + L +D +           T  E +E  +++ N    ++N           
Sbjct: 415 NQIGLVQQDNILFSDTVKENILLGRPTATDEEVVE-AAKMANAHDFIMN----------- 462
Query: 467 LGHYSDREV----RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER 522
           L    D EV      LSGG K++LS A   L NPP++ LDE TS +D  +   +   ++ 
Sbjct: 463 LPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALD- 521
Query: 523 AVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
            +S+ R  ++ +H +        K+ ++ NG     G+   L
Sbjct: 522 VLSKDRTTLIVAHRLSTITH-ADKIVVIENGHIVETGTHREL 562

>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 93/192 (48%), Gaps = 9/192 (4%)
Query: 372 GECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALN 431
           G+ + ++G NG+GKTT  K+L G +   +     ++ S  D   L+R  +GY   F   +
Sbjct: 37  GKIYVVVGKNGSGKTTLLKILAGLL--AAAGEIFLDGSPADPF-LLRKNVGYV--FQNPS 91
Query: 432 DRL---TPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLST 488
            ++   T  E + F   +  +    +   + + L    L   +  +   LSGG K++L+ 
Sbjct: 92  SQIIGATVEEDVAFSLEIMGLDESEMRKRIKKVLELVGLSGLAAADPLNLSGGQKQRLAI 151
Query: 489 AIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLT 548
           A  L  +   + LDEP S +DP ++R ++  +E   +EG+ +IL +H +E  + +   L 
Sbjct: 152 ASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGIILVTHELEYLDDMDFILH 211
Query: 549 IMVNGQFTCLGS 560
           I  NG     GS
Sbjct: 212 IS-NGTIDFCGS 222

>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 94/210 (44%), Gaps = 24/210 (11%)
Query: 345 VKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 404
           +K + K Y   +    A+  ++  +  GE   + G +G+GK+T   ++    KPT G  Y
Sbjct: 4   LKNVTKTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVY 63
Query: 405 VMNHSIRDSMD-----LVRSYIGYCPQFDALNDRLTPREHLEF--YSRVRNVPSVLLNTI 457
           + N    D  D     + R  IG+  Q   L   LT  E++E     + R   S      
Sbjct: 64  IDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXS------ 117
Query: 458 VNESLNKFALG---------HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGM 508
             E   K AL           +++ +   LSGG +++++ A AL  NPP+I  DEPT  +
Sbjct: 118 -GEERRKRALECLKXAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGAL 176
Query: 509 DPGARRFLWTCIERAVSE-GRCVILTSHNM 537
           D      +   +++   E G+ V++ +H++
Sbjct: 177 DSKTGEKIXQLLKKLNEEDGKTVVVVTHDI 206

>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 97/209 (46%), Gaps = 26/209 (12%)
Query: 345 VKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 404
           +K++ + Y   KG       IS  V +GE   ++G +G+GK+T   +L     PT G  +
Sbjct: 10  IKKVIRGYEILKG-------ISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVF 62
Query: 405 V----MNHSIRDSMDLVRS-YIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVN 459
           +    ++++    + L+R+  +G+  QF  L   LT  E++        VP + +     
Sbjct: 63  LEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENV-------IVPMLKMGKPKK 115
Query: 460 ES-------LNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGA 512
           E+       L++  LG    R+   LSGG +++++ A AL   P L+F DEPT  +D   
Sbjct: 116 EAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSAN 175
Query: 513 RRFLWTCIERAVSEGRCVILTSHNMEECE 541
            + +     +    G  +++ +H  E  E
Sbjct: 176 TKRVMDIFLKINEGGTSIVMVTHERELAE 204

>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 98/213 (46%), Gaps = 24/213 (11%)
Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
           ++ +K + K Y   +    A+  ++  +  GE   ++G +G+GK+T   ++    KPT G
Sbjct: 1   MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG 60
Query: 402 NAYVMNHSIRDSMD-----LVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLL-- 454
             Y+ N    D  D     + R  IG+  Q   L   LT  E++E       +P +    
Sbjct: 61  EVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVE-------LPLIFKYR 113
Query: 455 NTIVNESLNKFALG---------HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPT 505
             +  E   K AL           +++ +   LSGG +++++ A AL  NPP+I  D+PT
Sbjct: 114 GAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPT 173
Query: 506 SGMDPGARRFLWTCIERAVSE-GRCVILTSHNM 537
             +D      +   +++   E G+ V++ +H++
Sbjct: 174 GALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI 206

>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score = 65.5 bits (158), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 103/219 (47%), Gaps = 23/219 (10%)
Query: 360  PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVR 418
            P +  +S  V +G+   L+G +G GK+T  ++L     P +G+ ++    I+  ++  +R
Sbjct: 1047 PVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLR 1106
Query: 419  SYIGYCPQ----FD---------ALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKF 465
            + +G   Q    FD           N R+   E +     VR      ++  ++   +K+
Sbjct: 1107 AQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEI-----VRAAKEANIHQFIDSLPDKY 1161
Query: 466  ALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS 525
                  D+  + LSGG K++++ A AL+  P ++ LDE TS +D  + + +   +++A  
Sbjct: 1162 NT-RVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-R 1218
Query: 526  EGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
            EGR  I+ +H +   +     + ++ NG+    G+   L
Sbjct: 1219 EGRTCIVIAHRLSTIQN-ADLIVVIQNGKVKEHGTHQQL 1256

>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score = 65.5 bits (158), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 103/219 (47%), Gaps = 23/219 (10%)
Query: 360  PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVR 418
            P +  +S  V +G+   L+G +G GK+T  ++L     P +G+ ++    I+  ++  +R
Sbjct: 1047 PVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLR 1106
Query: 419  SYIGYCPQ----FD---------ALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKF 465
            + +G   Q    FD           N R+   E +     VR      ++  ++   +K+
Sbjct: 1107 AQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEI-----VRAAKEANIHQFIDSLPDKY 1161
Query: 466  ALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS 525
                  D+  + LSGG K++++ A AL+  P ++ LDE TS +D  + + +   +++A  
Sbjct: 1162 NT-RVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-R 1218
Query: 526  EGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
            EGR  I+ +H +   +     + ++ NG+    G+   L
Sbjct: 1219 EGRTCIVIAHRLSTIQN-ADLIVVIQNGKVKEHGTHQQL 1256

>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235

Iteration: 1
 Score = 65.1 bits (157), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 96/210 (45%), Gaps = 24/210 (11%)
Query: 345 VKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 404
           +K + K Y   +    A+  ++  +  GE   ++G +G+GK+T   ++    KPT G  Y
Sbjct: 4   LKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVY 63
Query: 405 VMNHSIRDSMD-----LVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVL--LNTI 457
           + N    D  D     + R  IG+  Q   L   LT  E++E       +P +      +
Sbjct: 64  IDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVE-------LPLIFKYRGAM 116
Query: 458 VNESLNKFAL---------GHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGM 508
             E   K AL           +++ +   LSGG +++++ A AL  NPP+I  D+PT  +
Sbjct: 117 SGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWAL 176
Query: 509 DPGARRFLWTCIERAVSE-GRCVILTSHNM 537
           D      +   +++   E G+ V++ +H++
Sbjct: 177 DSKTGEKIMQLLKKLNEEDGKTVVVVTHDI 206

>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 101/230 (43%), Gaps = 31/230 (13%)
Query: 356 KGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH---SIRD 412
           K  K  + +IS+ + +G+ + L GLNGAGKTT   +L      TSG   +       +  
Sbjct: 31  KQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGY 90
Query: 413 SMDLVRSYIGYCPQFDALNDRLTPREHL----------------EFYSRVRNVPSVLLNT 456
           S + VR +IG+     +L ++    E +                +    +RN    LL  
Sbjct: 91  SAETVRQHIGFVSH--SLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKL 148
Query: 457 IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFL 516
           +   +  +  +G+        LS G K+++  A AL G P ++ LDEP +G+D  AR  L
Sbjct: 149 VGXSAKAQQYIGY--------LSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARESL 200
Query: 517 WTCIERAVSE--GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
            + ++           I  +H +EE  A  +K+ ++ +GQ    G+   +
Sbjct: 201 LSILDSLSDSYPTLAXIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDI 250

>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 96/234 (41%), Gaps = 24/234 (10%)
Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
           VL V+ L   Y    G   A+  I   V RG+   L+G NGAGKTTT   + G ++   G
Sbjct: 6   VLEVQSLHVYY----GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKG 61
Query: 402 NAYVMNHSIRDSMDLV--RSYIGYCPQFDALNDRLTPREHLEF--YSR------VRNVPS 451
                   I +    V  R  I   P+   +   LT  E+L    Y+R       R++  
Sbjct: 62  KIIFNGQDITNKPAHVINRXGIALVPEGRRIFPELTVYENLXXGAYNRKDKEGIKRDLEW 121
Query: 452 VL-LNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDP 510
           +  L   + E L +            TLSGG ++ L+   AL   P L+  DEP+ G+ P
Sbjct: 122 IFSLFPRLKERLKQLG---------GTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAP 172
Query: 511 GARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
                ++  I++   EG  ++L   N      +     ++  GQ    G A+ L
Sbjct: 173 ILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASEL 226

>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 97/228 (42%), Gaps = 36/228 (15%)
Query: 360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDL-VR 418
           P     S  +  G    L+G +G+GK+T   +L     P SG   +  H IR    + +R
Sbjct: 389 PIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLR 448
Query: 419 SYIGYCPQ--------------FDALNDRLTPREHLEFYSRVRNVPSVL------LNTIV 458
           S IG   Q              + A +      E ++  + V N  + +       NT+V
Sbjct: 449 SKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVV 508
Query: 459 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT 518
            E   K  L          LSGG K++++ A ALL NP ++ LDE TS +D      +  
Sbjct: 509 GE---KGVL----------LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQE 555
Query: 519 CIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
            ++R + +GR V++ +H++   +     + ++  G+ T  G    L S
Sbjct: 556 ALDR-LMDGRTVLVIAHHLSTIKN-ANMVAVLDQGKITEYGKHEELLS 601

>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 96/228 (42%), Gaps = 36/228 (15%)
Query: 360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDL-VR 418
           P     S  +  G    L+G +G+GK+T   +L     P SG   +  H IR    + +R
Sbjct: 358 PIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLR 417
Query: 419 SYIGYCPQ--------------FDALNDRLTPREHLEFYSRVRNVPSVL------LNTIV 458
           S IG   Q              + A +      E ++  + V N  + +       NT+V
Sbjct: 418 SKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVV 477
Query: 459 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT 518
            E   K  L          LSGG K++++ A ALL NP ++ LDE TS +D      +  
Sbjct: 478 GE---KGVL----------LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQE 524
Query: 519 CIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
            ++R + +GR V++ +H +   +     + ++  G+ T  G    L S
Sbjct: 525 ALDR-LMDGRTVLVIAHRLSTIKN-ANMVAVLDQGKITEYGKHEELLS 570

>pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538

Iteration: 1
 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 91/199 (45%), Gaps = 28/199 (14%)
Query: 369 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPT-SGNAYVMNHSIRDSMD-LVRSYIGYCPQ 426
           V  G   G++G NG GK+T  K+L G + P   G+         DS D ++R++ G   Q
Sbjct: 44  VKEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGD--------NDSWDGVIRAFRGNELQ 95
Query: 427 --FDAL-NDRLTPREHLEFYSRVRNVPSVLLNTIVN------------ESLNKFALGHYS 471
             F+ L N  + P    ++   V  +P  +   ++             E +    L +  
Sbjct: 96  NYFEKLKNGEIRPVVKPQY---VDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVL 152
Query: 472 DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVI 531
           +RE++ LSGG  ++++ A ALL N    F DEP+S +D   R      I R   EG+ V+
Sbjct: 153 EREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVL 212
Query: 532 LTSHNMEECEALCTKLTIM 550
           +  H++   + L   + ++
Sbjct: 213 VVEHDLAVLDYLSDIIHVV 231

>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 98/227 (43%), Gaps = 8/227 (3%)
Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
            L +  L K + N+    P +N IS  +  GE   ++G +G GKTT  + L G  +P SG
Sbjct: 4   ALHIGHLSKSFQNT----PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSG 59
Query: 402 NAYVMNHSI---RDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIV 458
              +   +I     ++ +    +GY  Q   L   LT   ++ +        +      +
Sbjct: 60  EISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRI 119
Query: 459 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT 518
              L    +   + R    LSGG +++ + A AL  +P LI LDEP S +D   RR +  
Sbjct: 120 EAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIRE 179
Query: 519 CIERAV-SEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
            +  A+ + G+  +  SH+ EE      ++ +M  G+     S   L
Sbjct: 180 DMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHEL 226

>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243

Iteration: 1
 Score = 62.0 bits (149), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 50/222 (22%), Positives = 101/222 (45%), Gaps = 31/222 (13%)
Query: 362 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR-DSMDLVRSY 420
           ++ I+  + +GE  G++G +G+GK+T  K++     P +G   +  H +     + +R  
Sbjct: 21  LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 80
Query: 421 IGYCPQFDALNDRLTPREHLEFYSRVRNV----PSVLLNTIVNESLNKFALGHYSDREVR 476
           +G   Q + L +R          S + N+    P + +  ++  +  K A  H    E+R
Sbjct: 81  VGVVLQDNVLLNR----------SIIDNISLANPGMSVEKVIYAA--KLAGAHDFISELR 128
Query: 477 T------------LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAV 524
                        LSGG +++++ A AL+ NP ++  DE TS +D  +   +   + + +
Sbjct: 129 EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK-I 187
Query: 525 SEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
            +GR VI+ +H +   +    ++ +M  G+    G    L S
Sbjct: 188 CKGRTVIIIAHRLSTVKN-ADRIIVMEKGKIVEQGKHKELLS 228

>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243

Iteration: 1
 Score = 62.0 bits (149), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 102/227 (44%), Gaps = 40/227 (17%)
Query: 358 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDL 416
           ++  +  ISF           G +G GK+T F +L    +PT+G   +    I + S++ 
Sbjct: 14  SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLEN 73
Query: 417 VRSYIGYCPQFDALNDRLTPREHLEF------------------YSR--VRNVPSVLLNT 456
            RS IG+  Q  A+    T RE+L +                  ++R  V N+P   LNT
Sbjct: 74  WRSQIGFVSQDSAIMAG-TIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPD-QLNT 131
Query: 457 IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFL 516
            V E            R V+ +SGG +++L+ A A L NP ++ LDE T+ +D  +   +
Sbjct: 132 EVGE------------RGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMV 178
Query: 517 WTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATH 563
              ++ ++ +GR  ++ +H +        K+  +  GQ T  GS  H
Sbjct: 179 QKALD-SLMKGRTTLVIAHRLSTI-VDADKIYFIEKGQIT--GSGKH 221

>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241

Iteration: 1
 Score = 62.0 bits (149), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 50/222 (22%), Positives = 101/222 (45%), Gaps = 31/222 (13%)
Query: 362 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR-DSMDLVRSY 420
           ++ I+  + +GE  G++G +G+GK+T  K++     P +G   +  H +     + +R  
Sbjct: 19  LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 78
Query: 421 IGYCPQFDALNDRLTPREHLEFYSRVRNV----PSVLLNTIVNESLNKFALGHYSDREVR 476
           +G   Q + L +R          S + N+    P + +  ++  +  K A  H    E+R
Sbjct: 79  VGVVLQDNVLLNR----------SIIDNISLANPGMSVEKVIYAA--KLAGAHDFISELR 126
Query: 477 T------------LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAV 524
                        LSGG +++++ A AL+ NP ++  DE TS +D  +   +   + + +
Sbjct: 127 EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK-I 185
Query: 525 SEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
            +GR VI+ +H +   +    ++ +M  G+    G    L S
Sbjct: 186 CKGRTVIIIAHRLSTVKN-ADRIIVMEKGKIVEQGKHKELLS 226

>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247

Iteration: 1
 Score = 62.0 bits (149), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 50/222 (22%), Positives = 101/222 (45%), Gaps = 31/222 (13%)
Query: 362 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR-DSMDLVRSY 420
           ++ I+  + +GE  G++G +G+GK+T  K++     P +G   +  H +     + +R  
Sbjct: 25  LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84
Query: 421 IGYCPQFDALNDRLTPREHLEFYSRVRNV----PSVLLNTIVNESLNKFALGHYSDREVR 476
           +G   Q + L +R          S + N+    P + +  ++  +  K A  H    E+R
Sbjct: 85  VGVVLQDNVLLNR----------SIIDNISLANPGMSVEKVIYAA--KLAGAHDFISELR 132
Query: 477 T------------LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAV 524
                        LSGG +++++ A AL+ NP ++  DE TS +D  +   +   + + +
Sbjct: 133 EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK-I 191
Query: 525 SEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
            +GR VI+ +H +   +    ++ +M  G+    G    L S
Sbjct: 192 CKGRTVIIIAHRLSTVKN-ADRIIVMEKGKIVEQGKHKELLS 232

>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 91/194 (46%), Gaps = 15/194 (7%)
Query: 352 YANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 411
           YA+ + T   +  +SF V  G+   L+G +GAGK+T  ++L      +SG   +    I 
Sbjct: 63  YADGRET---LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDIS 119
Query: 412 D-SMDLVRSYIGYCPQFDAL-NDRLTPREHLEFYSRV----RNVPSVLLNTIVNESLNKF 465
             +   +RS+IG  PQ   L ND +        Y RV      V +      +++++  F
Sbjct: 120 QVTQASLRSHIGVVPQDTVLFNDTIADNIR---YGRVTAGNDEVEAAAQAAGIHDAIMAF 176
Query: 466 ALGHYSDREVR--TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERA 523
             G+ +    R   LSGG K++++ A  +L  P +I LDE TS +D    R +   + + 
Sbjct: 177 PEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAK- 235
Query: 524 VSEGRCVILTSHNM 537
           V   R  I+ +H +
Sbjct: 236 VCANRTTIVVAHRL 249

>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 97/215 (45%), Gaps = 27/215 (12%)
Query: 365  ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSYIGY 423
            +SF V  G+   L+G +G GK+T   +L        G  ++    I+  + +  RS I  
Sbjct: 1098 LSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAI 1157
Query: 424  CPQ----FD---------ALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHY 470
              Q    FD          L+        +E  +R+ N+     +  + E    F     
Sbjct: 1158 VSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANI-----HNFIAELPEGFET-RV 1211
Query: 471  SDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCV 530
             DR  + LSGG K++++ A AL+ NP ++ LDE TS +D  + + +   ++RA  EGR  
Sbjct: 1212 GDRGTQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRA-REGRTC 1269
Query: 531  ILTSHNME-----ECEALCTKLTIMVNGQFTCLGS 560
            I+ +H +      +C A+ +  TI+  G  T L S
Sbjct: 1270 IVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMS 1304

>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 102/220 (46%), Gaps = 28/220 (12%)
Query: 355 SKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM 414
            +G  P +  I+F + RG+   + G  GAGKT+   M+ G ++P+ G    + HS R   
Sbjct: 29  EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK---IKHSGR--- 82
Query: 415 DLVRSYIGYCPQFDALNDRLTPREHLEF---YSRVRNVPSVLLNTIVNESLNKFALGHYS 471
                 I +C QF  +    T +E++ F   Y   R   SV+    + E ++KFA     
Sbjct: 83  ------ISFCSQFSWIMPG-TIKENIIFGVSYDEYR-YRSVIKACQLEEDISKFA---EK 131
Query: 472 DREVR-----TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW-TCIERAVS 525
           D  V      TLSGG + ++S A A+  +  L  LD P   +D    + ++ +C+ + ++
Sbjct: 132 DNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA 191
Query: 526 EGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 565
             +  IL +  ME  +    K+ I+  G     G+ + L+
Sbjct: 192 -NKTRILVTSKMEHLKK-ADKILILHEGSSYFYGTFSELQ 229

>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 80/185 (43%), Gaps = 21/185 (11%)
Query: 369 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFD 428
           + +GE  G++G NG GKTT  KML G  +PT G             DL    + Y PQ+ 
Sbjct: 365 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV---------EWDLT---VAYKPQY- 411
Query: 429 ALNDRLTPREHLEFYSRVRNVPSVLLNT--IVNESLNKFALGHYSDREVRTLSGGNKRKL 486
                +        Y  +  + S  LN+     E L    +    DR V  LSGG  +++
Sbjct: 412 -----IKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRV 466
Query: 487 STAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEG-RCVILTSHNMEECEALCT 545
           + A  LL +  +  LDEP++ +D   R  +   I   + +  +  ++  H++   + +  
Sbjct: 467 AIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSD 526
Query: 546 KLTIM 550
           +L + 
Sbjct: 527 RLIVF 531

>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/222 (22%), Positives = 100/222 (45%), Gaps = 31/222 (13%)
Query: 362 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR-DSMDLVRSY 420
           ++ I+  + +GE  G++G  G+GK+T  K++     P +G   +  H +     + +R  
Sbjct: 21  LDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 80
Query: 421 IGYCPQFDALNDRLTPREHLEFYSRVRNV----PSVLLNTIVNESLNKFALGHYSDREVR 476
           +G   Q + L +R          S + N+    P + +  ++  +  K A  H    E+R
Sbjct: 81  VGVVLQDNVLLNR----------SIIDNISLANPGMSVEKVIYAA--KLAGAHDFISELR 128
Query: 477 T------------LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAV 524
                        LSGG +++++ A AL+ NP ++  DE TS +D  +   +   + + +
Sbjct: 129 EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK-I 187
Query: 525 SEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
            +GR VI+ +H +   +    ++ +M  G+    G    L S
Sbjct: 188 CKGRTVIIIAHRLSTVKN-ADRIIVMEKGKIVEQGKHKELLS 228

>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 80/185 (43%), Gaps = 21/185 (11%)
Query: 369 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFD 428
           + +GE  G++G NG GKTT  KML G  +PT G             DL    + Y PQ+ 
Sbjct: 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV---------EWDLT---VAYKPQY- 425
Query: 429 ALNDRLTPREHLEFYSRVRNVPSVLLNT--IVNESLNKFALGHYSDREVRTLSGGNKRKL 486
                +        Y  +  + S  LN+     E L    +    DR V  LSGG  +++
Sbjct: 426 -----IKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRV 480
Query: 487 STAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEG-RCVILTSHNMEECEALCT 545
           + A  LL +  +  LDEP++ +D   R  +   I   + +  +  ++  H++   + +  
Sbjct: 481 AIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSD 540
Query: 546 KLTIM 550
           +L + 
Sbjct: 541 RLIVF 545

>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 102/219 (46%), Gaps = 28/219 (12%)
Query: 356 KGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMD 415
           +G  P +  I+F + RG+   + G  GAGKT+   M+ G ++P+ G    + HS R    
Sbjct: 18  EGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK---IKHSGR---- 70
Query: 416 LVRSYIGYCPQFDALNDRLTPREHLEF---YSRVRNVPSVLLNTIVNESLNKFALGHYSD 472
                I +C QF  +    T +E++ F   Y   R   SV+    + E ++KFA     D
Sbjct: 71  -----ISFCSQFSWIMPG-TIKENIIFGVSYDEYR-YRSVIKACQLEEDISKFA---EKD 120
Query: 473 REVR-----TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW-TCIERAVSE 526
             V      TLSGG + ++S A A+  +  L  LD P   +D    + ++ +C+ + ++ 
Sbjct: 121 NIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA- 179
Query: 527 GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 565
            +  IL +  ME  +    K+ I+  G     G+ + L+
Sbjct: 180 NKTRILVTSKMEHLKK-ADKILILHEGSSYFYGTFSELQ 217

>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/222 (22%), Positives = 101/222 (45%), Gaps = 31/222 (13%)
Query: 362 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR-DSMDLVRSY 420
           ++ I+  + +GE  G++G +G+GK+T  K++     P +G   +  H +     + +R  
Sbjct: 25  LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84
Query: 421 IGYCPQFDALNDRLTPREHLEFYSRVRNV----PSVLLNTIVNESLNKFALGHYSDREVR 476
           +G   Q + L +R          S + N+    P + +  ++  +  K A  H    E+R
Sbjct: 85  VGVVLQDNVLLNR----------SIIDNISLANPGMSVEKVIYAA--KLAGAHDFISELR 132
Query: 477 T------------LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAV 524
                        LSGG +++++ A AL+ NP ++  D+ TS +D  +   +   + + +
Sbjct: 133 EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNMHK-I 191
Query: 525 SEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
            +GR VI+ +H +   +    ++ +M  G+    G    L S
Sbjct: 192 CKGRTVIIIAHRLSTVKN-ADRIIVMEKGKIVEQGKHKELLS 232

>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp- Binding Protein (cbio-2), St1066 Length = 263

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 79/169 (46%), Gaps = 14/169 (8%)
Query: 372 GECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQF-DAL 430
           GE   +LG NG+GKTT  + ++G + P SGN ++    +R     +R+YI Y     +A 
Sbjct: 30  GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRK----IRNYIRYSTNLPEAY 84
Query: 431 NDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGH-YSDREVRTLSGGNKRKLSTA 489
              +T  + +  Y  ++ +   L      E L    LG     R++  LS G    + T+
Sbjct: 85  EIGVTVNDIVYLYEELKGLDRDLFL----EMLKALKLGEEILRRKLYKLSAGQSVLVRTS 140
Query: 490 IALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 538
           +AL   P ++ LDEP   +D   R  +   I+    EG   IL +H ++
Sbjct: 141 LALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEG---ILVTHELD 186

>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 100/221 (45%), Gaps = 33/221 (14%)
Query: 356 KGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMD 415
           +G  P +  I+F + RG+   + G  GAGKT+   M+ G ++P+ G    + HS R    
Sbjct: 18  EGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK---IKHSGR---- 70
Query: 416 LVRSYIGYCPQFD-----ALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHY 470
                I +C QF       + + +    + E+  R     SV+    + E ++KFA    
Sbjct: 71  -----ISFCSQFSWIMPGTIKENIIGVSYDEYRYR-----SVIKACQLEEDISKFA---E 117
Query: 471 SDREVR-----TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW-TCIERAV 524
            D  V      TLSGG + ++S A A+  +  L  LD P   +D    + ++ +C+ + +
Sbjct: 118 KDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM 177
Query: 525 SEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 565
           +  +  IL +  ME  +    K+ I+  G     G+ + L+
Sbjct: 178 A-NKTRILVTSKMEHLKK-ADKILILHEGSSYFYGTFSELQ 216

>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 99/223 (44%), Gaps = 14/223 (6%)
Query: 349 FKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 408
           F+ + N   T P ++ ++F V  G    +LG  G+GK+T   ++   I P  G   V   
Sbjct: 349 FRYFEN---TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDEL 405
Query: 409 SIRD-SMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFAL 467
            +R   +  +R +I   PQ   L    T +E+L+ + R       ++       ++ F +
Sbjct: 406 DVRTVKLKDLRGHISAVPQETVLFSG-TIKENLK-WGREDATDDEIVEAAKIAQIHDFII 463
Query: 468 ----GHYS--DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIE 521
               G+ S  +R  R  SGG K++LS A AL+  P ++ LD+ TS +DP   + +   ++
Sbjct: 464 SLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLK 523
Query: 522 RAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
           R        I+T         L  K+ ++  G+    G+   L
Sbjct: 524 RYTKGCTTFIITQKI--PTALLADKILVLHEGKVAGFGTHKEL 564

>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 83/192 (43%), Gaps = 16/192 (8%)
Query: 372 GECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALN 431
           GE  G+LG NG GKTT  ++L G I    G           S+   +  + Y PQ    N
Sbjct: 294 GEIIGILGPNGIGKTTFARILVGEITADEG-----------SVTPEKQILSYKPQRIFPN 342
Query: 432 DRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIA 491
              T +++LE  S+     S      V + LN   L    +  V  LSGG  +KL  A  
Sbjct: 343 YDGTVQQYLENASKDALSTSSWFFEEVTKRLN---LHRLLESNVNDLSGGELQKLYIAAT 399
Query: 492 LLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCV-ILTSHNMEECEALCTKLTIM 550
           L     L  LD+P+S +D   R  +   I+R   E + V  +  H++   + +  ++ I+
Sbjct: 400 LAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRI-IV 458
Query: 551 VNGQFTCLGSAT 562
             G+    G AT
Sbjct: 459 FKGEPEKAGLAT 470

>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/222 (22%), Positives = 100/222 (45%), Gaps = 31/222 (13%)
Query: 362 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR-DSMDLVRSY 420
           ++ I+  + +GE  G++G +G+GK+T  K++     P +G   +  H +     + +R  
Sbjct: 19  LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 78
Query: 421 IGYCPQFDALNDRLTPREHLEFYSRVRNV----PSVLLNTIVNESLNKFALGHYSDREVR 476
           +G   Q + L +R          S + N+    P + +  ++  +  K A  H    E+R
Sbjct: 79  VGVVLQDNVLLNR----------SIIDNISLANPGMSVEKVIYAA--KLAGAHDFISELR 126
Query: 477 T------------LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAV 524
                        LSGG +++++ A AL+ NP ++  DE TS +D  +   +   + + +
Sbjct: 127 EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK-I 185
Query: 525 SEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
            +GR VI+ +  +   +    ++ +M  G+    G    L S
Sbjct: 186 CKGRTVIIIAARLSTVKN-ADRIIVMEKGKIVEQGKHKELLS 226

>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/222 (22%), Positives = 100/222 (45%), Gaps = 31/222 (13%)
Query: 362 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR-DSMDLVRSY 420
           ++ I+  + +GE  G++G +G+GK+T  K++     P +G   +  H +     + +R  
Sbjct: 25  LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84
Query: 421 IGYCPQFDALNDRLTPREHLEFYSRVRNV----PSVLLNTIVNESLNKFALGHYSDREVR 476
           +G   Q + L +R          S + N+    P + +  ++  +  K A  H    E+R
Sbjct: 85  VGVVLQDNVLLNR----------SIIDNISLANPGMSVEKVIYAA--KLAGAHDFISELR 132
Query: 477 T------------LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAV 524
                        LSGG +++++ A AL+ NP ++  DE TS +D  +   +   + + +
Sbjct: 133 EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK-I 191
Query: 525 SEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
            +GR VI+ +  +   +    ++ +M  G+    G    L S
Sbjct: 192 CKGRTVIIIAARLSTVKN-ADRIIVMEKGKIVEQGKHKELLS 232

>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 94/215 (43%), Gaps = 4/215 (1%)
Query: 354 NSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV--MNHSIR 411
            S G+   +  I+  +  GE   ++G +G+GK+T  + L        G   +  +N   +
Sbjct: 11  KSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAK 70
Query: 412 DS-MDLVRSYIGYCPQFDALNDRLTPREHLEFYS-RVRNVPSVLLNTIVNESLNKFALGH 469
           D+ ++ VR  +G   Q   L   +T   ++     +VR  P         E L+K  L  
Sbjct: 71  DTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKD 130
Query: 470 YSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC 529
            +     +LSGG  ++++ A AL   P ++  DEPTS +DP     + + +++  +EG  
Sbjct: 131 KAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMT 190
Query: 530 VILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
           +++ +H M     +  ++  M  G     G    L
Sbjct: 191 MVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDL 225

>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 94/215 (43%), Gaps = 4/215 (1%)
Query: 354 NSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV--MNHSIR 411
            S G+   +  I+  +  GE   ++G +G+GK+T  + L        G   +  +N   +
Sbjct: 32  KSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAK 91
Query: 412 DS-MDLVRSYIGYCPQFDALNDRLTPREHLEFYS-RVRNVPSVLLNTIVNESLNKFALGH 469
           D+ ++ VR  +G   Q   L   +T   ++     +VR  P         E L+K  L  
Sbjct: 92  DTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKD 151
Query: 470 YSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC 529
            +     +LSGG  ++++ A AL   P ++  DEPTS +DP     + + +++  +EG  
Sbjct: 152 KAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMT 211
Query: 530 VILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
           +++ +H M     +  ++  M  G     G    L
Sbjct: 212 MVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDL 246

>pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 99/215 (46%), Gaps = 28/215 (13%)
Query: 360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRS 419
           P +  I+F + RG+   + G  GAGKT+   M+ G ++P+ G    + HS R        
Sbjct: 52  PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK---IKHSGR-------- 100
Query: 420 YIGYCPQFDALNDRLTPREHLEF---YSRVRNVPSVLLNTIVNESLNKFALGHYSDREVR 476
            I +C QF  +    T +E++ F   Y   R   SV+    + E ++KFA     D  V 
Sbjct: 101 -ISFCSQFSWIMPG-TIKENIIFGVSYDEYR-YRSVIKACQLEEDISKFA---EKDNIVL 154
Query: 477 -----TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW-TCIERAVSEGRCV 530
                TLS G + K+S A A+  +  L  LD P   +D    + ++ +C+ + ++  +  
Sbjct: 155 GEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA-NKTR 213
Query: 531 ILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 565
           IL +  ME  +    K+ I+  G     G+ + L+
Sbjct: 214 ILVTSKMEHLKK-ADKILILHEGSSYFYGTFSELQ 247

>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 99/215 (46%), Gaps = 28/215 (13%)
Query: 360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRS 419
           P +  I+F + RG+   + G  GAGKT+   M+ G ++P+ G    + HS R        
Sbjct: 52  PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK---IKHSGR-------- 100
Query: 420 YIGYCPQFDALNDRLTPREHL---EFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVR 476
            I +C QF  +    T +E++     Y   R   SV+    + E ++KFA     D  V 
Sbjct: 101 -ISFCSQFSWIMPG-TIKENIIAGVSYDEYR-YRSVIKACQLEEDISKFA---EKDNIVL 154
Query: 477 -----TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW-TCIERAVSEGRCV 530
                TLSGG + ++S A A+  +  L  LD P   +D    + ++ +C+ + ++  +  
Sbjct: 155 GEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA-NKTR 213
Query: 531 ILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 565
           IL +  ME  +    K+ I+  G     G+ + L+
Sbjct: 214 ILVTSKMEHLKK-ADKILILHEGSSYFYGTFSELQ 247

>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 97/218 (44%), Gaps = 35/218 (16%)
Query: 360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRS 419
           P +  I+F + RG+   + G  GAGKT+   M+ G ++P+ G    + HS R        
Sbjct: 52  PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK---IKHSGR-------- 100
Query: 420 YIGYCPQFD-----ALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFA------LG 468
            I +C QF       + + +    + E+  R     SV+    + E ++KFA      LG
Sbjct: 101 -ISFCSQFSWIMPGTIKENIIGVSYDEYRYR-----SVIKACQLEEDISKFAEKDNIVLG 154
Query: 469 HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW-TCIERAVSEG 527
                   TLS G + K+S A A+  +  L  LD P   +D    + ++ +C+ + ++  
Sbjct: 155 EGG----ITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA-N 209
Query: 528 RCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 565
           +  IL +  ME  +    K+ I+  G     G+ + L+
Sbjct: 210 KTRILVTSKMEHLKK-ADKILILHEGSSYFYGTFSELQ 246

>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 50/214 (23%), Positives = 99/214 (46%), Gaps = 24/214 (11%)
Query: 362 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR--DSMDLVRS 419
           +N +S  +  GE   ++G NGAGK+T  ++LTG + P+ G  +++  ++       L R+
Sbjct: 27  INDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALART 86
Query: 420 YIGYCPQFDALNDRLTPREHLEF----YSRVRNVPSVLLNTIVNESLNKFALGHYSDREV 475
                 Q+  L    +  E ++     Y   ++  +  L  ++ ++ +  AL   + R+ 
Sbjct: 87  R-AVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQA--LQQVMAQT-DCLAL---AQRDY 139
Query: 476 RTLSGGNKRKLSTA--IALLGNPP----LIFLDEPTSGMDPGARRF---LWTCIERAVSE 526
           R LSGG ++++  A  +A L  P      +FLDEPTS +D   ++    L   + R    
Sbjct: 140 RVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPL 199
Query: 527 GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 560
             C +L  H++        ++ ++  G+    G+
Sbjct: 200 AVCCVL--HDLNLAALYADRIMLLAQGKLVACGT 231

>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582

Iteration: 1
 Score = 55.5 bits (132), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 48/224 (21%), Positives = 101/224 (45%), Gaps = 34/224 (15%)
Query: 360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVR 418
           PA+  I+  +  G+   L+G +G+GK+T   ++T       G+  +  H +R+ ++  +R
Sbjct: 357 PALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLR 416
Query: 419 SYIGYCPQ-FDALNDRLT-----------PREHLEFYSRVRNVPSVL------LNTIVNE 460
           + +    Q     ND +             RE +E  +R+      +      L+TI+ E
Sbjct: 417 NQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGE 476
Query: 461 SLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCI 520
           +                LSGG +++++ A ALL + P++ LDE TS +D  + R +   +
Sbjct: 477 N-------------GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL 523
Query: 521 ERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
           +  + + R  ++ +H +   E    ++ ++ +G     G+ + L
Sbjct: 524 DE-LQKNRTSLVIAHRLSTIEQ-ADEIVVVEDGIIVERGTHSEL 565

>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 78/180 (43%), Gaps = 19/180 (10%)
Query: 373 ECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALND 432
           E   ++G NG GKTT  K+L GA+KP  G             D+ +  +   PQ  A   
Sbjct: 379 EILVMMGENGTGKTTLIKLLAGALKPDEGQ------------DIPKLNVSMKPQKIAPKF 426
Query: 433 RLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIAL 492
             T R+   F+ ++R     L      + +    +    D+EV+ LSGG  ++++  +A 
Sbjct: 427 PGTVRQL--FFKKIRG--QFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLA- 481
Query: 493 LGNPPLIFL-DEPTSGMDPGARRFLWTCIERAV-SEGRCVILTSHNMEECEALCTKLTIM 550
           LG P  I+L DEP++ +D   R      I R +    +   +  H+      L  K+ + 
Sbjct: 482 LGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVF 541

>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 99/217 (45%), Gaps = 33/217 (15%)
Query: 360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRS 419
           P +  I+F + RG+   + G  GAGKT+   M+ G ++P+ G    + HS R        
Sbjct: 52  PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK---IKHSGR-------- 100
Query: 420 YIGYCPQFDALNDRLTP---REHL--EFYSRVRNVPSVLLNTIVNESLNKFALGHYSDRE 474
            I +C Q    N  + P   +E++    Y   R   SV+    + E ++KFA     D  
Sbjct: 101 -ISFCSQ----NSWIMPGTIKENIIGVSYDEYR-YRSVIKACQLEEDISKFA---EKDNI 151
Query: 475 VR-----TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW-TCIERAVSEGR 528
           V      TLSGG + ++S A A+  +  L  LD P   +D    + ++ +C+ + ++  +
Sbjct: 152 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA-NK 210
Query: 529 CVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 565
             IL +  ME  +    K+ I+  G     G+ + L+
Sbjct: 211 TRILVTSKMEHLKK-ADKILILHEGSSYFYGTFSELQ 246

>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 99/217 (45%), Gaps = 33/217 (15%)
Query: 360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRS 419
           P +  I+F + RG+   + G  GAGKT+   M+ G ++P+ G    + HS R        
Sbjct: 52  PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK---IKHSGR-------- 100
Query: 420 YIGYCPQFDALNDRLTP---REHL--EFYSRVRNVPSVLLNTIVNESLNKFALGHYSDRE 474
            I +C Q    N  + P   +E++    Y   R   SV+    + E ++KFA     D  
Sbjct: 101 -ISFCSQ----NSWIMPGTIKENIIGVSYDEYR-YRSVIKACQLEEDISKFA---EKDNI 151
Query: 475 VR-----TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW-TCIERAVSEGR 528
           V      TLSGG + ++S A A+  +  L  LD P   +D    + ++ +C+ + ++  +
Sbjct: 152 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA-NK 210
Query: 529 CVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 565
             IL +  ME  +    K+ I+  G     G+ + L+
Sbjct: 211 TRILVTSKMEHLKK-ADKILILHEGSSYFYGTFSELQ 246

>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/201 (21%), Positives = 90/201 (44%), Gaps = 33/201 (16%)
Query: 360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVR 418
           PA+  I+  +  G+   L+G +G+GK+T   ++T       G   +  H +R+ ++  +R
Sbjct: 357 PALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLR 416
Query: 419 SYIGYCPQ-FDALNDRLT-----------PREHLEFYSRVRNVPSVL------LNTIVNE 460
           + +    Q     ND +             RE +E  +R+      +      L+T++ E
Sbjct: 417 NQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGE 476
Query: 461 SLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCI 520
           +                LSGG +++++ A ALL + P++ LDE TS +D  + R +   +
Sbjct: 477 N-------------GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL 523
Query: 521 ERAVSEGRCVILTSHNMEECE 541
           +  + + R  ++ +H +   E
Sbjct: 524 DE-LQKNRTSLVIAHRLSTIE 543

>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 90/190 (47%), Gaps = 19/190 (10%)
Query: 365 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS-IRDSMDLVRSYIGY 423
           ++F +  G+   L+G NG+GK+T   +L    +PT G   +     ++     + + +  
Sbjct: 38  LTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAA 97
Query: 424 CPQFDALNDRLTPREHLEF----YSRVRNVPSVLLNTIVNESLNKFALGHYSDREV---- 475
             Q   L  R + RE++ +       +  + +V + +  ++ ++ F  G+  D EV    
Sbjct: 98  VGQEPLLFGR-SFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGY--DTEVGETG 154
Query: 476 RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPG----ARRFLWTCIERAVSEGRCVI 531
             LSGG ++ ++ A AL+  P L+ LD+ TS +D G     +R L+   E A    R V+
Sbjct: 155 NQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLLYESPEWA---SRTVL 211
Query: 532 LTSHNMEECE 541
           L +H +   E
Sbjct: 212 LITHQLSLAE 221

>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 62/288 (21%), Positives = 117/288 (40%), Gaps = 41/288 (14%)
Query: 305 FSRCFTR------SNLHPVPVSLXXXXXXXXXXXXXHGADSGDVLVVKRL-----FK-IY 352
           +SR FTR      +  + + ++L                D  D + ++ +     FK ++
Sbjct: 302 YSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDDPDAVELREVRGEIEFKNVW 361
Query: 353 ANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 412
            +    KP +  I+F +  G+   L+G  G+GKTT   +L        G   V    IR 
Sbjct: 362 FSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRK 421
Query: 413 -SMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYS 471
                +RS IG   Q D +    T +E+L++ +     P        +E + + A   +S
Sbjct: 422 IKRSSLRSSIGIVLQ-DTILFSTTVKENLKYGN-----PGA-----TDEEIKEAAKLTHS 470
Query: 472 DREVR---------------TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFL 516
           D  ++                LS G ++ L+   A L NP ++ LDE TS +D    + +
Sbjct: 471 DHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSI 530
Query: 517 WTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
              + + + EG+  I+ +H +   +     + ++ +G+   +G    L
Sbjct: 531 QAAMWKLM-EGKTSIIIAHRLNTIKN-ADLIIVLRDGEIVEMGKHDEL 576

>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 97/216 (44%), Gaps = 28/216 (12%)
Query: 360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRS 419
           P +  I+  + +GE   + G  G+GKT+   ++ G ++ + G   ++ HS R        
Sbjct: 52  PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEG---IIKHSGR-------- 100
Query: 420 YIGYCPQFDALNDRLTPREHLEF---YSRVRNVPSVLLNTIVNESLNKFALGHYSDREVR 476
            + +C QF  +    T +E++ F   Y   R   SV+    + + + KFA     D  V 
Sbjct: 101 -VSFCSQFSWIMPG-TIKENIIFGVSYDEYR-YKSVVKACQLQQDITKFA---EQDNTVL 154
Query: 477 -----TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW-TCIERAVSEGRCV 530
                TLSGG + ++S A A+  +  L  LD P   +D      ++ +C+ + ++  +  
Sbjct: 155 GEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMA-NKTR 213
Query: 531 ILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
           IL +  ME       K+ I+  G     G+ + L+S
Sbjct: 214 ILVTSKMEHLRK-ADKILILHQGSSYFYGTFSELQS 248

>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 81/178 (45%), Gaps = 11/178 (6%)
Query: 359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 418
           KP + +I+  + +G      G NG GKTT  K ++  +KP  G        I      V+
Sbjct: 22  KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK----VK 77
Query: 419 SYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVN--ESLNKFALGHYSDREVR 476
             I + P+   +  +++  ++L+  + +  V  V  N I++  ES+    L     +++ 
Sbjct: 78  GKIFFLPEEIIVPRKISVEDYLKAVASLYGV-KVNKNEIMDALESVEVLDLK----KKLG 132
Query: 477 TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTS 534
            LS G  R++  A  LL N  +  LD+P   +D  ++  +   I   + E   VI++S
Sbjct: 133 ELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISS 190

>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 97/216 (44%), Gaps = 28/216 (12%)
Query: 360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRS 419
           P +  I+  + +GE   + G  G+GKT+   ++ G ++ + G   ++ HS R        
Sbjct: 52  PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEG---IIKHSGR-------- 100
Query: 420 YIGYCPQFDALNDRLTPREHLEF---YSRVRNVPSVLLNTIVNESLNKFALGHYSDREVR 476
            + +C QF  +    T +E++ F   Y   R   SV+    + + + KFA     D  V 
Sbjct: 101 -VSFCSQFSWIMPG-TIKENIIFGVSYDEYR-YKSVVKACQLQQDITKFA---EQDNTVL 154
Query: 477 -----TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW-TCIERAVSEGRCV 530
                TLSGG + ++S A A+  +  L  LD P   +D      ++ +C+ + ++  +  
Sbjct: 155 GEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMA-NKTR 213
Query: 531 ILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
           IL +  ME       K+ I+  G     G+ + L+S
Sbjct: 214 ILVTSKMEHLRK-ADKILILHQGSSYFYGTFSELQS 248

>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 85/191 (44%), Gaps = 27/191 (14%)
Query: 362 VNQISFGVGRGECFGLLGLNGAGKTTTFKML------TGAIKPTSGNAYVMNHSIRDSMD 415
           +  I+F +  G    L+G  G+GK+T  K+L       G IK    N   +N   R+S  
Sbjct: 36  LKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKN---VNKYNRNS-- 90
Query: 416 LVRSYIGYCPQFDALNDRLTPREHLEF---YSRVRNVPSVLLNTIVNESLNKF--ALGHY 470
            +RS IG  PQ     D +   E +++   Y ++      ++    +  L  F  AL   
Sbjct: 91  -IRSIIGIVPQ-----DTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKK 144
Query: 471 SDREV----RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE 526
            D  V      LSGG +++++ A  LL +P ++  DE TS +D          +E  + +
Sbjct: 145 WDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVE-DLRK 203
Query: 527 GRCVILTSHNM 537
            R +I+ +H +
Sbjct: 204 NRTLIIIAHRL 214

>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 88/190 (46%), Gaps = 19/190 (10%)
Query: 365 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS-IRDSMDLVRSYIGY 423
           ++F +  G+   L+G NG+GK+T   +L    +PT G   +     ++     + + +  
Sbjct: 38  LTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAA 97
Query: 424 CPQFDALNDRLTPREHLEF----YSRVRNVPSVLLNTIVNESLNKFALGHYSDREV---- 475
             Q   L  R + RE++ +       +  + +V + +  ++ ++ F  G+  D EV    
Sbjct: 98  VGQEPLLFGR-SFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGY--DTEVGETG 154
Query: 476 RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPG----ARRFLWTCIERAVSEGRCVI 531
             LSGG ++ ++ A AL+  P L+ LD  TS +D G     +R L+   E A    R V+
Sbjct: 155 NQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWA---SRTVL 211
Query: 532 LTSHNMEECE 541
           L +  +   E
Sbjct: 212 LITQQLSLAE 221

>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 43/83 (51%)
Query: 91  LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 150
           LSGG ++++S A AL   P ++  DEPTS +DP     +   +++   EG+ +++ +H M
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM 213
Query: 151 EECEALCTKLTIMVNGQFTCLGS 173
                + + +  +  G+    G 
Sbjct: 214 GFARHVSSHVIFLHQGKIEEEGD 236

>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 43/83 (51%)
Query: 478 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 537
           LSGG ++++S A AL   P ++  DEPTS +DP     +   +++   EG+ +++ +H M
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM 213
Query: 538 EECEALCTKLTIMVNGQFTCLGS 560
                + + +  +  G+    G 
Sbjct: 214 GFARHVSSHVIFLHQGKIEEEGD 236

>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 96/215 (44%), Gaps = 27/215 (12%)
Query: 360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRS 419
           P +  I+  + +GE   + G  G+GKT+   ++ G ++ + G   ++ HS R        
Sbjct: 52  PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEG---IIKHSGR-------- 100
Query: 420 YIGYCPQFDALNDRLTPREHL--EFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVR- 476
            + +C QF  +    T +E++    Y   R   SV+    + + + KFA     D  V  
Sbjct: 101 -VSFCSQFSWIMPG-TIKENIIGVSYDEYR-YKSVVKACQLQQDITKFA---EQDNTVLG 154
Query: 477 ----TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW-TCIERAVSEGRCVI 531
               TLSGG + ++S A A+  +  L  LD P   +D      ++ +C+ + ++  +  I
Sbjct: 155 EGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMA-NKTRI 213
Query: 532 LTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
           L +  ME       K+ I+  G     G+ + L+S
Sbjct: 214 LVTSKMEHLRK-ADKILILHQGSSYFYGTFSELQS 247

>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/221 (21%), Positives = 94/221 (42%), Gaps = 30/221 (13%)
Query: 355 SKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM 414
           ++   P +N I+F +  G    ++G  G GK++    L   +    G+            
Sbjct: 14  ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV----------- 62
Query: 415 DLVRSYIGYCPQFDAL-NDRLTPREHLEF--------YSRVRNVPSVLLNTIVNESLNKF 465
             ++  + Y PQ   + ND L  RE++ F        Y  V    ++L +  +  S ++ 
Sbjct: 63  -AIKGSVAYVPQQAWIQNDSL--RENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRT 119
Query: 466 ALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCI--ERA 523
            +G         LSGG K+++S A A+  N  +   D+P S +D    + ++  +   + 
Sbjct: 120 EIGEKG----VNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKG 175
Query: 524 VSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
           + + +  IL +H+M     +   + +M  G+ + +GS   L
Sbjct: 176 MLKNKTRILVTHSMSYLPQVDV-IIVMSGGKISEMGSYQEL 215

>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 95/216 (43%), Gaps = 28/216 (12%)
Query: 360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRS 419
           P +  I+  + +GE   + G  G+GKT+   ++ G ++ + G   ++ HS R        
Sbjct: 52  PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEG---IIKHSGR-------- 100
Query: 420 YIGYCPQFDALNDRLTPREHL---EFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVR 476
            + +C QF  +    T +E++     Y   R   SV+    + + + KFA     D  V 
Sbjct: 101 -VSFCSQFSWIMPG-TIKENIIRGVSYDEYR-YKSVVKACQLQQDITKFA---EQDNTVL 154
Query: 477 -----TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDP-GARRFLWTCIERAVSEGRCV 530
                TLSGG + ++S A A+  +  L  LD P   +D     +   +C+ + ++  +  
Sbjct: 155 GEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMA-NKTR 213
Query: 531 ILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
           IL +  ME       K+ I+  G     G+ + L+S
Sbjct: 214 ILVTSKMEHLRK-ADKILILHQGSSYFYGTFSELQS 248

>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 96/216 (44%), Gaps = 28/216 (12%)
Query: 360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRS 419
           P +  I+  + +GE   + G  G+GKT+   ++ G ++ + G   ++ HS R        
Sbjct: 52  PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEG---IIKHSGR-------- 100
Query: 420 YIGYCPQFDALNDRLTPREHL---EFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVR 476
            + +C QF  +    T +E++     Y   R   SV+    + + + KFA     D  V 
Sbjct: 101 -VSFCSQFSWIMPG-TIKENIISGVSYDEYR-YKSVVKACQLQQDITKFA---EQDNTVL 154
Query: 477 -----TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW-TCIERAVSEGRCV 530
                TLSGG + ++S A A+  +  L  LD P   +D      ++ +C+ + ++  +  
Sbjct: 155 GEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMA-NKTR 213
Query: 531 ILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
           IL +  ME       K+ I+  G     G+ + L+S
Sbjct: 214 ILVTSKMEHLRK-ADKILILHQGSSYFYGTFSELQS 248

>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/232 (21%), Positives = 96/232 (41%), Gaps = 18/232 (7%)
Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT-- 399
           ++ V+ L  +Y   +GT  A + IS  +       ++G + +GK+T  + +T  + P   
Sbjct: 4   IIRVEDLRAVYLVREGTIKAADGISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGR 63
Query: 400 --SGNAYVMNHSI----RDSMDLVR-SYIGYCPQF--DALNDRLTPREHLEFYSRVRNVP 450
             SG        +     + +  +R   I   PQ    +LN  +   EH +       V 
Sbjct: 64  ILSGRVLYKGKDLLTMREEELRKIRWKEIALVPQAAQQSLNPTMKVIEHFKDTVEAHGV- 122
Query: 451 SVLLNTIVNESLNKFALGHYSDREVR-----TLSGGNKRKLSTAIALLGNPPLIFLDEPT 505
               + ++ ++  K  +   +   V       LSGG K+++  A+ALL +P ++ LDEPT
Sbjct: 123 RWSHSELIEKASEKLRMVRLNPEAVLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPT 182
Query: 506 SGMDPGAR-RFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFT 556
           S +D   +   +    E        +I  +H++     L  K+ ++  G   
Sbjct: 183 SALDVLTQAHIIQLLKELKKMLKITLIFVTHDIAVAAELADKVAVIYGGNLV 234

>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 87/190 (45%), Gaps = 19/190 (10%)
Query: 365 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS-IRDSMDLVRSYIGY 423
           ++F +  G+   L+G NG+GK+T   +L    +PT G   +     ++     + + +  
Sbjct: 38  LTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAA 97
Query: 424 CPQFDALNDRLTPREHLEF----YSRVRNVPSVLLNTIVNESLNKFALGHYSDREV---- 475
             Q   L  R + RE++ +       +  + +V + +  ++ ++ F  G+  D EV    
Sbjct: 98  VGQEPLLFGR-SFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGY--DTEVGETG 154
Query: 476 RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPG----ARRFLWTCIERAVSEGRCVI 531
             L+ G ++ ++ A AL+  P L+ LD  TS +D G     +R L+   E A    R V+
Sbjct: 155 NQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWA---SRTVL 211
Query: 532 LTSHNMEECE 541
           L +  +   E
Sbjct: 212 LITQQLSLAE 221

>pdb|3QKU|A Chain A, Mre11 Rad50 Binding Domain In Complex With Rad50 And Amp-Pnp Length = 359

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 78  FALGHYSDREVRTLSGGNK------RKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT 131
           F +    +R +  LSGG +       +L+ ++ L G   L+ LDEPT  +D   RR L T
Sbjct: 256 FVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT 315
Query: 132 CIERAVSEGRCVILTSHNMEECEA 155
            +ER + +   VIL SH+ E  +A
Sbjct: 316 IMERYLKKIPQVILVSHDEELKDA 339

>pdb|3QKU|A Chain A, Mre11 Rad50 Binding Domain In Complex With Rad50 And Amp-Pnp Length = 359

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 465 FALGHYSDREVRTLSGGNK------RKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT 518
           F +    +R +  LSGG +       +L+ ++ L G   L+ LDEPT  +D   RR L T
Sbjct: 256 FVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT 315
Query: 519 CIERAVSEGRCVILTSHNMEECEA 542
            +ER + +   VIL SH+ E  +A
Sbjct: 316 IMERYLKKIPQVILVSHDEELKDA 339

>pdb|3QKT|A Chain A, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In Complex With Amp- Pnp Length = 339

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 78  FALGHYSDREVRTLSGGNK------RKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT 131
           F +    +R +  LSGG +       +L+ ++ L G   L+ LDEPT  +D   RR L T
Sbjct: 236 FVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT 295
Query: 132 CIERAVSEGRCVILTSHNMEECEA 155
            +ER + +   VIL SH+ E  +A
Sbjct: 296 IMERYLKKIPQVILVSHDEELKDA 319

>pdb|3QKT|A Chain A, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In Complex With Amp- Pnp Length = 339

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 465 FALGHYSDREVRTLSGGNK------RKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT 518
           F +    +R +  LSGG +       +L+ ++ L G   L+ LDEPT  +D   RR L T
Sbjct: 236 FVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT 295
Query: 519 CIERAVSEGRCVILTSHNMEECEA 542
            +ER + +   VIL SH+ E  +A
Sbjct: 296 IMERYLKKIPQVILVSHDEELKDA 319

>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 84/213 (39%), Gaps = 34/213 (15%)
Query: 365 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV------MNHSIRDSMDLVR 418
           +S  V  GE   L+G NGAGK+T    + G    TSG   +      +       + L R
Sbjct: 19  LSGEVRAGEILHLVGPNGAGKSTLLARMAGM---TSGKGSIQFAGQPLEAWSATKLALHR 75
Query: 419 SYIG--YCPQFDALNDRLTPREH---LEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDR 473
           +Y+     P F       TP  H   L  + + R         ++N+     AL     R
Sbjct: 76  AYLSQQQTPPFA------TPVWHYLTLHQHDKTR-------TELLNDVAGALALDDKLGR 122
Query: 474 EVRTLSGGNKRKLSTAIALL-----GNPP--LIFLDEPTSGMDPGARRFLWTCIERAVSE 526
               LSGG  +++  A  +L      NP   L+ LD+P + +D   +  L   +     +
Sbjct: 123 STNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSALSQQ 182
Query: 527 GRCVILTSHNMEECEALCTKLTIMVNGQFTCLG 559
           G  ++++SH++        +  ++  G+    G
Sbjct: 183 GLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASG 215

>pdb|1II8|B Chain B, Crystal Structure Of The P. Furiosus Rad50 Atpase Domain Length = 174

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 78  FALGHYSDREVRTLSGGNK------RKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT 131
           F +    +R +  LSGG +       +L+ ++ L G   L+ LDEPT  +D   RR L T
Sbjct: 71  FVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT 130
Query: 132 CIERAVSEGRCVILTSHNME 151
            +ER + +   VIL SH+ E
Sbjct: 131 IMERYLKKIPQVILVSHDEE 150

>pdb|1II8|B Chain B, Crystal Structure Of The P. Furiosus Rad50 Atpase Domain Length = 174

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 465 FALGHYSDREVRTLSGGNK------RKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT 518
           F +    +R +  LSGG +       +L+ ++ L G   L+ LDEPT  +D   RR L T
Sbjct: 71  FVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT 130
Query: 519 CIERAVSEGRCVILTSHNME 538
            +ER + +   VIL SH+ E
Sbjct: 131 IMERYLKKIPQVILVSHDEE 150

>pdb|1F2T|B Chain B, Crystal Structure Of Atp-free Rad50 Abc-atpase Length = 148

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 78  FALGHYSDREVRTLSGGNK------RKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT 131
           F +    +R +  LSGG +       +L+ ++ L G   L+ LDEPT  +D   RR L T
Sbjct: 45  FVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT 104
Query: 132 CIERAVSEGRCVILTSHNME 151
            +ER + +   VIL SH+ E
Sbjct: 105 IMERYLKKIPQVILVSHDEE 124

>pdb|1F2T|B Chain B, Crystal Structure Of Atp-free Rad50 Abc-atpase Length = 148

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 465 FALGHYSDREVRTLSGGNK------RKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT 518
           F +    +R +  LSGG +       +L+ ++ L G   L+ LDEPT  +D   RR L T
Sbjct: 45  FVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT 104
Query: 519 CIERAVSEGRCVILTSHNME 538
            +ER + +   VIL SH+ E
Sbjct: 105 IMERYLKKIPQVILVSHDEE 124

>pdb|3QKR|B Chain B, Mre11 Rad50 Binding Domain Bound To Rad50 Length = 179

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 78  FALGHYSDREVRTLSGGNK------RKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT 131
           F +    +R +  LSGG +       +L+ ++ L G   L+ LDEPT  +D   RR L T
Sbjct: 76  FVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT 135
Query: 132 CIERAVSEGRCVILTSHNME 151
            +ER + +   VIL SH+ E
Sbjct: 136 IMERYLKKIPQVILVSHDEE 155

>pdb|3QKR|B Chain B, Mre11 Rad50 Binding Domain Bound To Rad50 Length = 179

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 465 FALGHYSDREVRTLSGGNK------RKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT 518
           F +    +R +  LSGG +       +L+ ++ L G   L+ LDEPT  +D   RR L T
Sbjct: 76  FVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT 135
Query: 519 CIERAVSEGRCVILTSHNME 538
            +ER + +   VIL SH+ E
Sbjct: 136 IMERYLKKIPQVILVSHDEE 155

>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna Length = 916

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 51/110 (46%), Gaps = 12/110 (10%)
Query: 47  LTPREHLEFYSRVRNVPSV--LLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIA 104
           +T  E LEF+   +N+PS+   L  + +  L    LG  +     TLSGG  +++  A  
Sbjct: 767 MTVDEALEFF---KNIPSIKRTLQVLHDVGLGYVKLGQPAT----TLSGGEAQRIKLASE 819
Query: 105 LLGNPP---LIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 151
           L        L  LDEPT G+     R L   + R V  G  VI+  HN++
Sbjct: 820 LRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD 869

>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna Length = 916

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 51/110 (46%), Gaps = 12/110 (10%)
Query: 434 LTPREHLEFYSRVRNVPSV--LLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIA 491
           +T  E LEF+   +N+PS+   L  + +  L    LG  +     TLSGG  +++  A  
Sbjct: 767 MTVDEALEFF---KNIPSIKRTLQVLHDVGLGYVKLGQPAT----TLSGGEAQRIKLASE 819
Query: 492 LLGNPP---LIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 538
           L        L  LDEPT G+     R L   + R V  G  VI+  HN++
Sbjct: 820 LRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD 869

>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 83/213 (38%), Gaps = 34/213 (15%)
Query: 365 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV------MNHSIRDSMDLVR 418
           +S  V  GE   L+G NGAGK+T    + G    TSG   +      +       + L R
Sbjct: 19  LSGEVRAGEILHLVGPNGAGKSTLLARMAGM---TSGKGSIQFAGQPLEAWSATKLALHR 75
Query: 419 SYIG--YCPQFDALNDRLTPREH---LEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDR 473
           +Y+     P F       TP  H   L  + + R         ++N+     AL     R
Sbjct: 76  AYLSQQQTPPFA------TPVWHYLTLHQHDKTR-------TELLNDVAGALALDDKLGR 122
Query: 474 EVRTLSGGNKRKLSTAIALL-----GNPP--LIFLDEPTSGMDPGARRFLWTCIERAVSE 526
               LSGG  +++  A  +L      NP   L+ LD+P   +D   +  L   +     +
Sbjct: 123 STNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKILSALSQQ 182
Query: 527 GRCVILTSHNMEECEALCTKLTIMVNGQFTCLG 559
           G  ++++SH++        +  ++  G+    G
Sbjct: 183 GLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASG 215

>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 358 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 404
           +KP +  I+F         ++G NGAGK+T   +LTG + PTSG  Y
Sbjct: 685 SKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVY 731

>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 76/191 (39%), Gaps = 34/191 (17%)
Query: 365 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV------MNHSIRDSMDLVR 418
           +S  V  GE   L+G NGAGK+T      G    TSG   +      +       + L R
Sbjct: 19  LSGEVRAGEILHLVGPNGAGKSTLLARXAGX---TSGKGSIQFAGQPLEAWSATKLALHR 75
Query: 419 SYIGY--CPQFDALNDRLTPREH---LEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDR 473
           +Y+     P F       TP  H   L  + + R         ++N+     AL     R
Sbjct: 76  AYLSQQQTPPFA------TPVWHYLTLHQHDKTRT-------ELLNDVAGALALDDKLGR 122
Query: 474 EVRTLSGGNKRKLSTAIALL-----GNPP--LIFLDEPTSGMDPGARRFLWTCIERAVSE 526
               LSGG  +++  A  +L      NP   L+ LDEP + +D   +  L   +     +
Sbjct: 123 STNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALCQQ 182
Query: 527 GRCVILTSHNM 537
           G  ++ +SH++
Sbjct: 183 GLAIVXSSHDL 193

>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 76/191 (39%), Gaps = 34/191 (17%)
Query: 365 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV------MNHSIRDSMDLVR 418
           +S  V  GE   L+G NGAGK+T      G    TSG   +      +       + L R
Sbjct: 19  LSGEVRAGEILHLVGPNGAGKSTLLARXAGX---TSGKGSIQFAGQPLEAWSATKLALHR 75
Query: 419 SYIGY--CPQFDALNDRLTPREH---LEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDR 473
           +Y+     P F       TP  H   L  + + R         ++N+     AL     R
Sbjct: 76  AYLSQQQTPPFA------TPVWHYLTLHQHDKTRT-------ELLNDVAGALALDDKLGR 122
Query: 474 EVRTLSGGNKRKLSTAIALL-----GNPP--LIFLDEPTSGMDPGARRFLWTCIERAVSE 526
               LSGG  +++  A  +L      NP   L+ LDEP + +D   +  L   +     +
Sbjct: 123 STNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALSQQ 182
Query: 527 GRCVILTSHNM 537
           G  ++ +SH++
Sbjct: 183 GLAIVXSSHDL 193

>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 358 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 404
           +KP +  I+F         ++G NGAGK+T   +LTG + PTSG  Y
Sbjct: 679 SKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVY 725

>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 358 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 404
           +KP +  I+F         ++G NGAGK+T   +LTG + PTSG  Y
Sbjct: 685 SKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVY 731

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	566
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	2e-84
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	2e-48
1sgw_A	214	Putative ABC transporter; structural genomics, P p	2e-67
1sgw_A	214	Putative ABC transporter; structural genomics, P p	7e-36
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	3e-45
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	3e-22
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	1e-33
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	1e-14
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	2e-33
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	6e-17
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	5e-32
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	4e-17
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	5e-32
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	2e-19
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	2e-16
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	1e-09
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	5e-31
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	2e-20
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	2e-15
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	5e-09
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	7e-31
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	1e-20
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	4e-13
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	7e-10
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	1e-29
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	2e-21
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	2e-15
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	3e-11
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	2e-29
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	4e-14
1g6h_A	257	High-affinity branched-chain amino acid transport	2e-28
1g6h_A	257	High-affinity branched-chain amino acid transport	4e-13
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	3e-23
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	4e-09
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	2e-19
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	4e-04
1ji0_A	240	ABC transporter; ATP binding protein, structural g	5e-17
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	2e-16
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	2e-12
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	7e-12
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	1e-09
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	3e-07
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	3e-15
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	5e-04
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	6e-15
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	8e-15
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	1e-13
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	3e-13
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	1e-05
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	9e-13
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	2e-05
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	1e-12
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	4e-04
2ghi_A	260	Transport protein; multidrug resistance protein, M	5e-12
2ghi_A	260	Transport protein; multidrug resistance protein, M	1e-05
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	1e-11
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	1e-11
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	2e-11
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	1e-04
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	2e-11
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	1e-10
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	1e-10
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	3e-10
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	9e-10
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	2e-09
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	4e-05
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	3e-09
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	4e-09
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	1e-05
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	6e-04
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	8e-09
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	2e-08
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	7e-04
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	3e-08
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	1e-07
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	5e-07
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	7e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	1e-06
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	1e-06
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	2e-06
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	2e-06
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	2e-06
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	2e-06
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	5e-06
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	1e-05
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	1e-05
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	2e-05
1b0u_A	262	Histidine permease; ABC transporter, transport pro	4e-05

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256

 Score =  262 bits (671), Expect = 2e-84
 Identities = 81/238 (34%), Positives = 118/238 (49%), Gaps = 4/238 (1%)

Query: 329 ERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTT 388
             +++ H       +VVK L K      G K  +  ISF +  GE FGL+G NGAGKTTT
Sbjct: 2   GSDKIHHHHHHMGAVVVKDLRKRI----GKKEILKGISFEIEEGEIFGLIGPNGAGKTTT 57

Query: 389 FKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRN 448
            ++++  IKP+SG   V   ++ +    VR  I Y P+       +   E+L F +    
Sbjct: 58  LRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYA 117

Query: 449 VPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGM 508
             S  +  +V  +     LG      V T S G  RKL  A AL+ NP L  LDEPTSG+
Sbjct: 118 SSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGL 177

Query: 509 DPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
           D    R +   +++A  EG  ++++SHNM E E LC ++ ++ NG     G+   LK 
Sbjct: 178 DVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 235

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256

 Score =  168 bits (427), Expect = 2e-48
 Identities = 57/184 (30%), Positives = 86/184 (46%), Gaps = 5/184 (2%)

Query: 2   GLTTTPKRVVTLLLTTQ---KVPGSNPTIDKNL--SYIGYCPQFDALNDRLTPREHLEFY 56
           G TTT + + TL+  +     V G N   + +     I Y P+       +   E+L F 
Sbjct: 53  GKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFV 112

Query: 57  SRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDE 116
           +      S  +  +V  +     LG      V T S G  RKL  A AL+ NP L  LDE
Sbjct: 113 AGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDE 172

Query: 117 PTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATH 176
           PTSG+D    R +   +++A  EG  ++++SHNM E E LC ++ ++ NG     G+   
Sbjct: 173 PTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEE 232

Query: 177 LKSK 180
           LK +
Sbjct: 233 LKER 236

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214

 Score =  216 bits (553), Expect = 2e-67
 Identities = 44/221 (19%), Positives = 86/221 (38%), Gaps = 17/221 (7%)

Query: 335 HGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 394
           H    G  L ++ L   Y      KP + +I+  + +G      G NG GKTT  K ++ 
Sbjct: 3   HHHHHGSKLEIRDLSVGYD-----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTIST 57

Query: 395 AIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLL 454
            +KP  G        I      V+  I + P+   +  +++  ++L+  + +  V     
Sbjct: 58  YLKPLKGEIIYNGVPITK----VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKV--N 111

Query: 455 NTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARR 514
              + ++L    +     + +  LS G  R++  A  LL N  +  LD+P   +D  ++ 
Sbjct: 112 KNEIMDALESVEVLDLKKK-LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKH 170

Query: 515 FLWTCIERAVSEGRCVIL-TSHNMEECEALCTKLTIMVNGQ 554
            +   I   + E   VI+ +   +  C+        +    
Sbjct: 171 KVLKSILEILKEKGIVIISSREELSYCD----VNENLHKYS 207

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214

 Score =  132 bits (335), Expect = 7e-36
 Identities = 31/170 (18%), Positives = 64/170 (37%), Gaps = 13/170 (7%)

Query: 2   GLTTTPKRVVTLLLTTQ---KVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSR 58
           G TT  K + T L   +      G    I K    I + P+   +  +++  ++L+  + 
Sbjct: 47  GKTTLLKTISTYLKPLKGEIIYNGVP--ITKVKGKIFFLPEEIIVPRKISVEDYLKAVAS 104

Query: 59  VRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPT 118
           +  V        + ++L    +     + +  LS G  R++  A  LL N  +  LD+P 
Sbjct: 105 LYGVKV--NKNEIMDALESVEVLDLKKK-LGELSQGTIRRVQLASTLLVNAEIYVLDDPV 161

Query: 119 SGMDPGARRFLWTCIERAVSEGRCVIL-TSHNMEECEALCTKLTIMVNGQ 167
             +D  ++  +   I   + E   VI+ +   +  C+        +    
Sbjct: 162 VAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCD----VNENLHKYS 207

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279

 Score =  160 bits (406), Expect = 3e-45
 Identities = 54/236 (22%), Positives = 107/236 (45%), Gaps = 19/236 (8%)

Query: 338 DSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK 397
            S  ++ + ++ ++       K  + +IS+ + +G+ + L GLNGAGKTT   +L     
Sbjct: 17  GSHMLIQLDQIGRMK----QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP 72

Query: 398 PTSGNAYVMNH---SIRDSMDLVRSYIGYCPQFDALNDRLTPREHLE------FYSRV-- 446
            TSG   +       +  S + VR +IG+     +L ++    E +        +  +  
Sbjct: 73  ATSGTVNLFGKMPGKVGYSAETVRQHIGFVSH--SLLEKFQEGERVIDVVISGAFKSIGV 130

Query: 447 RNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTS 506
                  +    ++ L    +   + + +  LS G K+++  A AL+G P ++ LDEP +
Sbjct: 131 YQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAA 190

Query: 507 GMDPGARRFLWTCIERAVSEGR--CVILTSHNMEECEALCTKLTIMVNGQFTCLGS 560
           G+D  AR  L + ++          +I  +H +EE  A  +K+ ++ +GQ    G+
Sbjct: 191 GLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGA 246

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279

 Score = 95.7 bits (239), Expect = 3e-22
 Identities = 32/152 (21%), Positives = 67/152 (44%), Gaps = 12/152 (7%)

Query: 32  SYIGYCPQFDALNDRLTPREHLE------FYSRV--RNVPSVLLNTIVNESLNKFALGHY 83
            +IG+     +L ++    E +        +  +         +    ++ L    +   
Sbjct: 97  QHIGFVSH--SLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAK 154

Query: 84  SDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGR-- 141
           + + +  LS G K+++  A AL+G P ++ LDEP +G+D  AR  L + ++         
Sbjct: 155 AQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTL 214

Query: 142 CVILTSHNMEECEALCTKLTIMVNGQFTCLGS 173
            +I  +H +EE  A  +K+ ++ +GQ    G+
Sbjct: 215 AMIYVTHFIEEITANFSKILLLKDGQSIQQGA 246

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263

 Score =  127 bits (322), Expect = 1e-33
 Identities = 50/211 (23%), Positives = 91/211 (43%), Gaps = 15/211 (7%)

Query: 345 VKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 404
           +K +    +     + ++  I+  V  GE   +LG NG+GKTT  + ++G + P SGN +
Sbjct: 4   LKNVGITLSGKGYERFSLENINLEV-NGEKVIILGPNGSGKTTLLRAISG-LLPYSGNIF 61

Query: 405 VMNHSIRDSMDLVRSYIGYCPQ-FDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLN 463
           +    +R     +R+YI Y     +A    +T  + +  Y  ++ +       +  E L 
Sbjct: 62  INGMEVRK----IRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLD----RDLFLEMLK 113

Query: 464 KFALG-HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER 522
              LG     R++  LS G    + T++AL   P ++ LDEP   +D   R  +   I+ 
Sbjct: 114 ALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKE 173

Query: 523 AVSEGRCVILTSHNMEECEALCTKLTIMVNG 553
               G+  IL +H ++            + G
Sbjct: 174 ---YGKEGILVTHELDMLNLYKEYKAYFLVG 201

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263

 Score = 72.8 bits (179), Expect = 1e-14
 Identities = 29/141 (20%), Positives = 54/141 (38%), Gaps = 10/141 (7%)

Query: 27  IDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALG-HYSD 85
           I   + Y    P+   +   +T  + +  Y  ++ +       +  E L    LG     
Sbjct: 70  IRNYIRYSTNLPEAYEIG--VTVNDIVYLYEELKGLD----RDLFLEMLKALKLGEEILR 123

Query: 86  REVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL 145
           R++  LS G    + T++AL   P ++ LDEP   +D   R  +   I+     G+  IL
Sbjct: 124 RKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKE---YGKEGIL 180

Query: 146 TSHNMEECEALCTKLTIMVNG 166
            +H ++            + G
Sbjct: 181 VTHELDMLNLYKEYKAYFLVG 201

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275

 Score =  127 bits (322), Expect = 2e-33
 Identities = 61/233 (26%), Positives = 106/233 (45%), Gaps = 26/233 (11%)

Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
           +L V+ L   Y++      A+  I+  + RGE   +LG NG GK+T F+   G +KP+SG
Sbjct: 7   ILKVEELNYNYSDGT---HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSG 63

Query: 402 NAYVMNHSI---RDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRV--------RN-- 448
                N  I   R  +  +R  IG   Q         P ++  F + V         N  
Sbjct: 64  RILFDNKPIDYSRKGIMKLRESIGIVFQD--------P-DNQLFSASVYQDVSFGAVNMK 114

Query: 449 VPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGM 508
           +P   +   V+ +L +  + H  D+    LS G K++++ A  L+  P ++ LDEPT+G+
Sbjct: 115 LPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGL 174

Query: 509 DPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 560
           DP     +   +     E G  +I+ +H+++     C  + +M  G+    G+
Sbjct: 175 DPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGN 227

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275

 Score = 80.3 bits (199), Expect = 6e-17
 Identities = 27/104 (25%), Positives = 53/104 (50%), Gaps = 1/104 (0%)

Query: 71  VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW 130
           V+ +L +  + H  D+    LS G K++++ A  L+  P ++ LDEPT+G+DP     + 
Sbjct: 124 VDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIM 183

Query: 131 TCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 173
             +     E G  +I+ +H+++     C  + +M  G+    G+
Sbjct: 184 KLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGN 227

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266

 Score =  123 bits (311), Expect = 5e-32
 Identities = 61/232 (26%), Positives = 104/232 (44%), Gaps = 31/232 (13%)

Query: 345 VKRLFKIY-ANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA 403
           V  +  I+   +   K A+  +S  +  GEC  + G  G+GK+T  +++ G I+PTSG+ 
Sbjct: 5   VVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDV 64

Query: 404 YV--MNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRV--------RNV-PSV 452
                     +    +R  IG   Q+        P E   F  RV        +N  P  
Sbjct: 65  LYDGERKKGYE----IRRNIGIAFQY--------P-EDQFFAERVFDEVAFAVKNFYPDR 111

Query: 453 LLNTIVNESLNKFALG--HYSDREVRTLSGGNKRKLSTAIA--LLGNPPLIFLDEPTSGM 508
               +V +++    L    + DR    LSGG KR++  AIA  ++  P ++ LDEP  G+
Sbjct: 112 DPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRV--AIASVIVHEPDILILDEPLVGL 169

Query: 509 DPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 560
           D   +  L   +E+  + G+ VIL SH++E       ++ ++  G+    G+
Sbjct: 170 DREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGT 221

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266

 Score = 80.7 bits (200), Expect = 4e-17
 Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 6/107 (5%)

Query: 71  VNESLNKFALG--HYSDREVRTLSGGNKRKLSTAIA--LLGNPPLIFLDEPTSGMDPGAR 126
           V +++    L    + DR    LSGG KR++  AIA  ++  P ++ LDEP  G+D   +
Sbjct: 117 VKKAMEFVGLDFDSFKDRVPFFLSGGEKRRV--AIASVIVHEPDILILDEPLVGLDREGK 174

Query: 127 RFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 173
             L   +E+  + G+ VIL SH++E       ++ ++  G+    G+
Sbjct: 175 TDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGT 221

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score =  128 bits (325), Expect = 5e-32
 Identities = 55/243 (22%), Positives = 92/243 (37%), Gaps = 17/243 (6%)

Query: 309 FTRSNLHPVPVSLEEDDVRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFG 368
           F +  L    + +  D+++   + V     S D+    +  KI    K     +   +  
Sbjct: 233 FLKGYLPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKII--KKLGDFQLVVDNGE 290

Query: 369 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFD 428
              GE  G+LG NG GKTT  ++L G I    G+       +            Y PQ  
Sbjct: 291 AKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILS-----------YKPQRI 339

Query: 429 ALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLST 488
             N   T +++LE  S+     S   +    E   +  L    +  V  LSGG  +KL  
Sbjct: 340 FPNYDGTVQQYLENASKDALSTS---SWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYI 396

Query: 489 AIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKL 547
           A  L     L  LD+P+S +D   R  +   I+R   E      +  H++   + +  ++
Sbjct: 397 AATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRI 456

Query: 548 TIM 550
            + 
Sbjct: 457 IVF 459

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 90.5 bits (225), Expect = 2e-19
 Identities = 38/187 (20%), Positives = 73/187 (39%), Gaps = 12/187 (6%)

Query: 361 AVNQISFGVGR-GECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRS 419
                     +     G+LG NG GKTT  K+L G I P  G+                 
Sbjct: 13  GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGK 72

Query: 420 YIGYCPQFDALNDRLTPR---EHLEFYSRV------RNVPSVLLNTIVNESLNKFALGHY 470
            I    + +  ++ L      +++E+ S+         +  +      +E      + + 
Sbjct: 73  EIYNYFK-ELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNL 131

Query: 471 SDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCV 530
            +++   LSGG  ++L  A +LL    +   D+P+S +D   R  +   I R + + + V
Sbjct: 132 WNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAI-RELLKNKYV 190

Query: 531 ILTSHNM 537
           I+  H++
Sbjct: 191 IVVDHDL 197

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 81.6 bits (202), Expect = 2e-16
 Identities = 31/139 (22%), Positives = 55/139 (39%), Gaps = 4/139 (2%)

Query: 26  TIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSD 85
           ++      + Y PQ    N   T +++LE  S+     S   +    E   +  L    +
Sbjct: 324 SVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTS---SWFFEEVTKRLNLHRLLE 380

Query: 86  REVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVI 144
             V  LSGG  +KL  A  L     L  LD+P+S +D   R  +   I+R   E      
Sbjct: 381 SNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTF 440

Query: 145 LTSHNMEECEALCTKLTIM 163
           +  H++   + +  ++ + 
Sbjct: 441 IIDHDLSIHDYIADRIIVF 459

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 59.7 bits (145), Expect = 1e-09
 Identities = 19/80 (23%), Positives = 39/80 (48%), Gaps = 1/80 (1%)

Query: 71  VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW 130
            +E      + +  +++   LSGG  ++L  A +LL    +   D+P+S +D   R  + 
Sbjct: 119 KDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMA 178

Query: 131 TCIERAVSEGRCVILTSHNM 150
             I R + + + VI+  H++
Sbjct: 179 KAI-RELLKNKYVIVVDHDL 197

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score =  126 bits (319), Expect = 5e-31
 Identities = 52/243 (21%), Positives = 90/243 (37%), Gaps = 22/243 (9%)

Query: 309 FTRSNLHPVPVSLEEDDVRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFG 368
           F +  L    V     ++R  +       +   ++   RL K Y         +      
Sbjct: 324 FLQGYLKDENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKDY-----GSFKLEVEPGE 378

Query: 369 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFD 428
           + +GE  G++G NG GKTT  KML G  +PT G        +   + +      Y PQ+ 
Sbjct: 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEG-------KVEWDLTVA-----YKPQYI 426

Query: 429 ALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLST 488
                 T  E             +  N    E L    +    DR V  LSGG  ++++ 
Sbjct: 427 KAEYEGTVYEL--LSKIDS--SKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAI 482

Query: 489 AIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER-AVSEGRCVILTSHNMEECEALCTKL 547
           A  LL +  +  LDEP++ +D   R  +   I        +  ++  H++   + +  +L
Sbjct: 483 AATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRL 542

Query: 548 TIM 550
            + 
Sbjct: 543 IVF 545

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 93.9 bits (234), Expect = 2e-20
 Identities = 50/193 (25%), Positives = 76/193 (39%), Gaps = 18/193 (9%)

Query: 355 SKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM 414
             G    V      V  G   G++G NG GKTT  K+L G + P          ++  + 
Sbjct: 100 RYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAF 159

Query: 415 D-------LVRSYIG-----YCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL 462
                     R   G       PQ+  L  +    +  E   +V  V          E +
Sbjct: 160 RGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEV------GKFEEVV 213

Query: 463 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER 522
            +  L +  DRE+  LSGG  ++++ A ALL      F DEP+S +D   R  +   I R
Sbjct: 214 KELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRR 273

Query: 523 AVSEGRCVILTSH 535
             +EG+ V++  H
Sbjct: 274 LANEGKAVLVVEH 286

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 78.1 bits (193), Expect = 2e-15
 Identities = 28/139 (20%), Positives = 55/139 (39%), Gaps = 6/139 (4%)

Query: 26  TIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSD 85
            ++ +L+ + Y PQ+       T  E             +  N    E L    +    D
Sbjct: 412 KVEWDLT-VAYKPQYIKAEYEGTVYEL--LSKIDS--SKLNSNFYKTELLKPLGIIDLYD 466

Query: 86  REVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER-AVSEGRCVI 144
           R V  LSGG  ++++ A  LL +  +  LDEP++ +D   R  +   I        +  +
Sbjct: 467 RNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 526

Query: 145 LTSHNMEECEALCTKLTIM 163
           +  H++   + +  +L + 
Sbjct: 527 VVEHDVLMIDYVSDRLIVF 545

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 57.7 bits (140), Expect = 5e-09
 Identities = 26/78 (33%), Positives = 41/78 (52%)

Query: 71  VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW 130
             E + +  L +  DRE+  LSGG  ++++ A ALL      F DEP+S +D   R  + 
Sbjct: 209 FEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVA 268

Query: 131 TCIERAVSEGRCVILTSH 148
             I R  +EG+ V++  H
Sbjct: 269 RVIRRLANEGKAVLVVEH 286

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score =  125 bits (316), Expect = 7e-31
 Identities = 54/243 (22%), Positives = 92/243 (37%), Gaps = 22/243 (9%)

Query: 309 FTRSNLHPVPVSLEEDDVRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFG 368
           F R  L    V     +++  +       +   ++   RL K Y         +      
Sbjct: 254 FLRGYLKDENVRFRPYEIKFTKTGERVEIERETLVTYPRLVKDYG-----SFRLEVEPGE 308

Query: 369 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFD 428
           + +GE  G++G NG GKTT  KML G  +PT G        I   + +      Y PQ+ 
Sbjct: 309 IKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEG-------KIEWDLTVA-----YKPQYI 356

Query: 429 ALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLST 488
             +   T  E             +  N    E L    +    DREV  LSGG  ++++ 
Sbjct: 357 KADYEGTVYE--LLSKIDA--SKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAI 412

Query: 489 AIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER-AVSEGRCVILTSHNMEECEALCTKL 547
           A  LL +  +  LDEP++ +D   R  +   I        +  ++  H++   + +  +L
Sbjct: 413 AATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRL 472

Query: 548 TIM 550
            + 
Sbjct: 473 MVF 475

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 94.7 bits (236), Expect = 1e-20
 Identities = 48/215 (22%), Positives = 85/215 (39%), Gaps = 18/215 (8%)

Query: 335 HGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 394
           H +       +++L +   +  G    V      V  G   G++G NG GK+T  K+L G
Sbjct: 10  HSSGLVPRSHMEQLEEDCVHRYGVNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAG 69

Query: 395 AIKP------TSGNAYVMNHSIRDSMDLVRSYIGYC------PQFDALNDRLTPREHLEF 442
            + P       S +  +      +  +               PQ+  L  +    + +E 
Sbjct: 70  QLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIEL 129

Query: 443 YSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLD 502
             +            + E +    L +  +RE++ LSGG  ++++ A ALL N    F D
Sbjct: 130 LKKADET------GKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFD 183

Query: 503 EPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 537
           EP+S +D   R      I R   EG+ V++  H++
Sbjct: 184 EPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDL 218

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 70.8 bits (174), Expect = 4e-13
 Identities = 30/139 (21%), Positives = 57/139 (41%), Gaps = 6/139 (4%)

Query: 26  TIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSD 85
            I+ +L+ + Y PQ+   +   T  E             +  N    E L    +    D
Sbjct: 342 KIEWDLT-VAYKPQYIKADYEGTVYE--LLSKIDA--SKLNSNFYKTELLKPLGIIDLYD 396

Query: 86  REVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER-AVSEGRCVI 144
           REV  LSGG  ++++ A  LL +  +  LDEP++ +D   R  +   I        +  +
Sbjct: 397 REVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 456

Query: 145 LTSHNMEECEALCTKLTIM 163
           +  H++   + +  +L + 
Sbjct: 457 VVEHDVLMIDYVSDRLMVF 475

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 60.4 bits (147), Expect = 7e-10
 Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 6/113 (5%)

Query: 38  PQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKR 97
           PQ+  L  +    + +E   +            + E +    L +  +RE++ LSGG  +
Sbjct: 112 PQYVDLIPKAVKGKVIELLKKADET------GKLEEVVKALELENVLEREIQHLSGGELQ 165

Query: 98  KLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 150
           +++ A ALL N    F DEP+S +D   R      I R   EG+ V++  H++
Sbjct: 166 RVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDL 218

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score =  122 bits (308), Expect = 1e-29
 Identities = 54/265 (20%), Positives = 91/265 (34%), Gaps = 23/265 (8%)

Query: 293 YSAINLSIEYKVFSRCFTRSNLH--PVPVSLEEDDVRKERERVEHGADSGDVLVVKRLFK 350
           Y  + L    +     F   ++    +    E    R      +   DS          K
Sbjct: 301 YGVVTLPASVREGINIFLDGHIPAENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLK 360

Query: 351 IYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 410
                      +N         E   ++G NG GKTT  K+L GA+KP  G         
Sbjct: 361 KTQG----DFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEG--------- 407

Query: 411 RDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHY 470
           +D   L  S     PQ  A     T R+   F+ ++R     L      + +    +   
Sbjct: 408 QDIPKLNVSMK---PQKIAPKFPGTVRQL--FFKKIRG--QFLNPQFQTDVVKPLRIDDI 460

Query: 471 SDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRC 529
            D+EV+ LSGG  ++++  +AL     +  +DEP++ +D   R      I R +    + 
Sbjct: 461 IDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKT 520

Query: 530 VILTSHNMEECEALCTKLTIMVNGQ 554
             +  H+      L  K+ +     
Sbjct: 521 AFIVEHDFIMATYLADKVIVFEGIP 545

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 97.4 bits (243), Expect = 2e-21
 Identities = 44/226 (19%), Positives = 82/226 (36%), Gaps = 20/226 (8%)

Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY------------ 404
                          G+  GL+G NG GK+T  K+L G  KP  G               
Sbjct: 88  SANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYF 147

Query: 405 ----VMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNE 460
               + N+  +   D +++ I   PQ+     R   +  ++    +  +        V  
Sbjct: 148 RGSELQNYFTKMLEDDIKAIIK--PQYVDNIPRAI-KGPVQKVGELLKLRMEKSPEDVKR 204

Query: 461 SLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCI 520
            +    L +   R++  LSGG  ++ +  ++ +    +   DEP+S +D   R      I
Sbjct: 205 YIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQII 264

Query: 521 ERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
              ++  + VI   H++   + L   + I+  G  +  G  T   S
Sbjct: 265 RSLLAPTKYVICVEHDLSVLDYLSDFVCII-YGVPSVYGVVTLPAS 309

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 78.1 bits (193), Expect = 2e-15
 Identities = 28/143 (19%), Positives = 55/143 (38%), Gaps = 6/143 (4%)

Query: 26  TIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSD 85
                L+ +   PQ  A     T R+   F+ ++R     L      + +    +    D
Sbjct: 408 QDIPKLN-VSMKPQKIAPKFPGTVRQL--FFKKIRG--QFLNPQFQTDVVKPLRIDDIID 462

Query: 86  REVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVI 144
           +EV+ LSGG  ++++  +AL     +  +DEP++ +D   R      I R +    +   
Sbjct: 463 QEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAF 522

Query: 145 LTSHNMEECEALCTKLTIMVNGQ 167
           +  H+      L  K+ +     
Sbjct: 523 IVEHDFIMATYLADKVIVFEGIP 545

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 65.1 bits (159), Expect = 3e-11
 Identities = 23/109 (21%), Positives = 45/109 (41%), Gaps = 1/109 (0%)

Query: 71  VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW 130
           V   +    L +   R++  LSGG  ++ +  ++ +    +   DEP+S +D   R    
Sbjct: 202 VKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAA 261

Query: 131 TCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 179
             I   ++  + VI   H++   + L   + I+  G  +  G  T   S
Sbjct: 262 QIIRSLLAPTKYVICVEHDLSVLDYLSDFVCII-YGVPSVYGVVTLPAS 309

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253

 Score =  115 bits (291), Expect = 2e-29
 Identities = 53/214 (24%), Positives = 93/214 (43%), Gaps = 26/214 (12%)

Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDL 416
                  Q++F + +G+   +LG NG GK+T   +L G  +P  G        I      
Sbjct: 16  AENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQG-------KIE----- 63

Query: 417 VRSYIGYCPQFDALNDRLTPRE--------HLEFYSRVRNVPSVLLNTIVNESLNKFALG 468
           V   IG+ PQF +     +  +        H+  +++    P      +  ++L+   L 
Sbjct: 64  VYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAK----PKSHDYQVAMQALDYLNLT 119

Query: 469 HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER-AVSEG 527
           H + RE  +LSGG ++ +  A A+     LI LDEPTS +D   +  + + +   A S+ 
Sbjct: 120 HLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQN 179

Query: 528 RCVILTSHNMEECEALCTKLTIMVNGQFTCLGSA 561
             V+ T+H   +  A+  K  +++N Q    G  
Sbjct: 180 MTVVFTTHQPNQVVAIANKT-LLLNKQNFKFGET 212

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253

 Score = 71.4 bits (176), Expect = 4e-14
 Identities = 37/150 (24%), Positives = 68/150 (45%), Gaps = 14/150 (9%)

Query: 34  IGYCPQFDALNDRLTPRE--------HLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSD 85
           IG+ PQF +     +  +        H+  +++    P      +  ++L+   L H + 
Sbjct: 68  IGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAK----PKSHDYQVAMQALDYLNLTHLAK 123

Query: 86  REVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER-AVSEGRCVI 144
           RE  +LSGG ++ +  A A+     LI LDEPTS +D   +  + + +   A S+   V+
Sbjct: 124 REFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVV 183

Query: 145 LTSHNMEECEALCTKLTIMVNGQFTCLGSA 174
            T+H   +  A+  K  +++N Q    G  
Sbjct: 184 FTTHQPNQVVAIANKT-LLLNKQNFKFGET 212

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257

 Score =  112 bits (283), Expect = 2e-28
 Identities = 51/217 (23%), Positives = 90/217 (41%), Gaps = 31/217 (14%)

Query: 361 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-------S 413
           A++ +S  V +G+   ++G NG+GK+T   ++TG +K   G  Y  N  I +        
Sbjct: 22  ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH 81

Query: 414 MDLVRSYIGYCPQFDALNDRLTPRE------HLEFYSRVRNVPSVLLNTIVN-------- 459
             +VR++     Q       +T  E           S    + S+     +         
Sbjct: 82  YGIVRTF-----QTPQPLKEMTVLENLLIGEICPGES---PLNSLFYKKWIPKEEEMVEK 133

Query: 460 --ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW 517
             + L    L H  DR+   LSGG  + +    AL+ NP +I +DEP +G+ PG    ++
Sbjct: 134 AFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIF 193

Query: 518 TCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 554
             +    ++G   ++  H ++        L +M NGQ
Sbjct: 194 NHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQ 230

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257

 Score = 68.7 bits (169), Expect = 4e-13
 Identities = 27/95 (28%), Positives = 46/95 (48%)

Query: 73  ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTC 132
           + L    L H  DR+   LSGG  + +    AL+ NP +I +DEP +G+ PG    ++  
Sbjct: 136 KILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNH 195

Query: 133 IERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 167
           +    ++G   ++  H ++        L +M NGQ
Sbjct: 196 VLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQ 230

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249

 Score = 98.0 bits (245), Expect = 3e-23
 Identities = 41/227 (18%), Positives = 76/227 (33%), Gaps = 30/227 (13%)

Query: 351 IYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 410
           +          +  +S  V  GE   L+G NGAGK+T    + G +    G+       +
Sbjct: 5   MQLQDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGKGSIQFAGQPL 63

Query: 411 RD--SMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLL-------NTIVNES 461
               +  L      Y  Q                   V +   + L         ++N+ 
Sbjct: 64  EAWSATKLALH-RAYLSQQQTPPFATP----------VWHY--LTLHQHDKTRTELLNDV 110

Query: 462 LNKFALGHYSDREVRTLSGGNKRKLSTAIALL-------GNPPLIFLDEPTSGMDPGARR 514
               AL     R    LSGG  +++  A  +L           L+ LDEP + +D   + 
Sbjct: 111 AGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQS 170

Query: 515 FLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSA 561
            L   +     +G  ++++SH++        +  ++  G+    G  
Sbjct: 171 ALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRR 217

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249

 Score = 56.4 bits (137), Expect = 4e-09
 Identities = 26/155 (16%), Positives = 51/155 (32%), Gaps = 26/155 (16%)

Query: 34  IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLL-------NTIVNESLNKFALGHYSDR 86
             Y  Q                   V +   + L         ++N+     AL     R
Sbjct: 75  RAYLSQQQTPPFATP----------VWHY--LTLHQHDKTRTELLNDVAGALALDDKLGR 122

Query: 87  EVRTLSGGNKRKLSTAIALL-------GNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE 139
               LSGG  +++  A  +L           L+ LDEP + +D   +  L   +     +
Sbjct: 123 STNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQ 182

Query: 140 GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSA 174
           G  ++++SH++        +  ++  G+    G  
Sbjct: 183 GLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRR 217

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366

 Score = 88.9 bits (221), Expect = 2e-19
 Identities = 59/234 (25%), Positives = 107/234 (45%), Gaps = 7/234 (2%)

Query: 327 RKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKT 386
                      D   ++ +  + K++     T  A+N +S  V  G+ +G++G +GAGK+
Sbjct: 9   HHHHSSGHIDDDDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKS 68

Query: 387 TTFKMLTGAIKPTSGNAYVMNHSIR--DSMDL--VRSYIGYCPQ-FDALNDRLTPREHLE 441
           T  + +    +PT G+  V    +      +L   R  IG   Q F+ L+ R T   ++ 
Sbjct: 69  TLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSR-TVFGNVA 127

Query: 442 FYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFL 501
               + N P   +   V E L+   LG   D     LSGG K++++ A AL  NP ++  
Sbjct: 128 LPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLC 187

Query: 502 DEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQ 554
           D+ TS +DP   R +   ++      G  ++L +H M+  + +C  + ++ NG+
Sbjct: 188 DQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGE 241

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 35/130 (26%), Positives = 63/130 (48%), Gaps = 2/130 (1%)

Query: 39  QFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRK 98
            F+ L+ R T   ++     + N P   +   V E L+   LG   D     LSGG K++
Sbjct: 113 HFNLLSSR-TVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQR 171

Query: 99  LSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALC 157
           ++ A AL  NP ++  D+ TS +DP   R +   ++      G  ++L +H M+  + +C
Sbjct: 172 VAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRIC 231

Query: 158 TKLTIMVNGQ 167
             + ++ NG+
Sbjct: 232 DCVAVISNGE 241

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240

 Score = 79.8 bits (198), Expect = 5e-17
 Identities = 59/226 (26%), Positives = 95/226 (42%), Gaps = 8/226 (3%)

Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
           VL V+ L   Y    G   A+  I   V RG+   L+G NGAGKTTT   + G ++   G
Sbjct: 6   VLEVQSLHVYY----GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKG 61

Query: 402 NAYVMNHSI--RDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVN 459
                   I  + +  + R  I   P+   +   LT  E+L   +  R     +   +  
Sbjct: 62  KIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDL-E 120

Query: 460 ESLNKF-ALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT 518
              + F  L     +   TLSGG ++ L+   AL+  P L+ +DEP+ G+ P     ++ 
Sbjct: 121 WIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFE 180

Query: 519 CIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
            I++   EG  ++L   N      +     ++  GQ    G A+ L
Sbjct: 181 VIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASEL 226

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 82.0 bits (202), Expect = 2e-16
 Identities = 44/291 (15%), Positives = 94/291 (32%), Gaps = 39/291 (13%)

Query: 276 WRIIGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNLHPVPVSLEEDDVRKERERVEH 335
           ++I+ + +  +         I+    +   +   T          + ++  ++  + +  
Sbjct: 363 FKIVVEYIAAIGADLIDERIIDQQAWFTHITPYMTIFLHEKKAKDILDEFRKRAVDNIPV 422

Query: 336 GADSGDVLVVKRLFKIYANSK--GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT 393
           G +  D             S   G K  +N+    + R   +G+ G NG GK+T  + + 
Sbjct: 423 GPNFDDEEDEGEDLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIA 482

Query: 394 GAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQ-FDALNDRLTPREHL-----EFYSRVR 447
                      V     ++          Y     D  +   +  + +          ++
Sbjct: 483 NG--------QVDGFPTQEECR-----TVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIK 529

Query: 448 NVPSVLLNTIVNESLNKFALGHYS-DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTS 506
                       + L +F          +  LSGG K KL+ A A+L N  ++ LDEPT+
Sbjct: 530 ------------DKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTN 577

Query: 507 GMDPGARRFLWTCIERAVSEGRC-VILTSHNMEECEALCTKLTIMVNGQFT 556
            +D     +L       ++      I  SH+    + +C  +      +  
Sbjct: 578 HLDTVNVAWL----VNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKLR 624

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 68.9 bits (168), Expect = 2e-12
 Identities = 50/272 (18%), Positives = 87/272 (31%), Gaps = 27/272 (9%)

Query: 290 GALYSAINLSIEYKVFSRCFTRSNLHPVPVSLEEDDVRKERERVEHGADSGDVLVVKRLF 349
           G +Y+  N  I Y        +     +   L++      + R + G D           
Sbjct: 728 GEVYTHENCRIAY------IKQHAFAHIESHLDKTPSEYIQWRFQTGED-----RETMDR 776

Query: 350 KIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTF--KMLTGAIKPTSGNAYVMN 407
                ++    A+N+I    G       +      K T                +   + 
Sbjct: 777 ANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVP 836

Query: 408 HSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFAL 467
               D+  + R  +        + +            R       L    + E  +   L
Sbjct: 837 MMSVDNAWIPRGELVES-HSKMVAEVDMKEALASGQFRP------LTRKEIEEHCSMLGL 889

Query: 468 G--HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS 525
                S   +R LSGG K KL  A      P LI LDEPT+ +D  +   L     +A+ 
Sbjct: 890 DPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGAL----SKALK 945

Query: 526 E-GRCVILTSHNMEECEALCTKLTIMVNGQFT 556
           E    VI+ +H+ E  + L  ++  + +G+ T
Sbjct: 946 EFEGGVIIITHSAEFTKNLTEEVWAVKDGRMT 977

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 67.4 bits (164), Expect = 7e-12
 Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 5/87 (5%)

Query: 84  SDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRC 142
           S   +R LSGG K KL  A      P LI LDEPT+ +D  +   L     +A+ E    
Sbjct: 895 SHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGAL----SKALKEFEGG 950

Query: 143 VILTSHNMEECEALCTKLTIMVNGQFT 169
           VI+ +H+ E  + L  ++  + +G+ T
Sbjct: 951 VIIITHSAEFTKNLTEEVWAVKDGRMT 977

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 60.0 bits (145), Expect = 1e-09
 Identities = 32/190 (16%), Positives = 63/190 (33%), Gaps = 24/190 (12%)

Query: 346 KRLFKIYANSK----GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
           K + K+          +KP +  I+F         ++G NGAGK+T   +LTG + PTSG
Sbjct: 669 KAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSG 728

Query: 402 NAYVMNHSIRDSMDLVRSYIGYCPQ----FDALNDRLTPREHLEFYSRVRNVPSVLLNTI 457
                + + R         I Y  Q        +   TP E+++         +      
Sbjct: 729 E-VYTHENCR---------IAYIKQHAFAHIESHLDKTPSEYIQ-----WRFQTGEDRET 773

Query: 458 VNESLNKFAL-GHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFL 516
           ++ +  +       +  ++  + G  +R               +      G + G +   
Sbjct: 774 MDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSER 833

Query: 517 WTCIERAVSE 526
           W  +    + 
Sbjct: 834 WVPMMSVDNA 843

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 52.3 bits (125), Expect = 3e-07
 Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 5/86 (5%)

Query: 85  DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC-V 143
              +  LSGG K KL+ A A+L N  ++ LDEPT+ +D     +L       ++      
Sbjct: 543 AMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWL----VNYLNTCGITS 598

Query: 144 ILTSHNMEECEALCTKLTIMVNGQFT 169
           I  SH+    + +C  +      +  
Sbjct: 599 ITISHDSVFLDNVCEYIINYEGLKLR 624

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355

 Score = 76.5 bits (189), Expect = 3e-15
 Identities = 52/183 (28%), Positives = 88/183 (48%), Gaps = 19/183 (10%)

Query: 335 HGADSGDVLV-VKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT 393
           H    G + +    + KIY    G   +V  +SF +  GE  GLLG +G+GKTT  +++ 
Sbjct: 6   HHHHHGSMTIEFVGVEKIY---PGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIA 62

Query: 394 GAIKPTSGNAYVMNHSI-------RDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRV 446
           G  +PT G+ ++    +       R+        +G   Q  AL   +T  +++ F  R 
Sbjct: 63  GLERPTKGDVWIGGKRVTDLPPQKRN--------VGLVFQNYALFQHMTVYDNVSFGLRE 114

Query: 447 RNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTS 506
           + VP   ++  V E L    L  Y++R    LSGG +++++ A AL   P ++  DEP +
Sbjct: 115 KRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFA 174

Query: 507 GMD 509
            +D
Sbjct: 175 AID 177

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355

 Score = 41.4 bits (98), Expect = 5e-04
 Identities = 21/65 (32%), Positives = 35/65 (53%)

Query: 58  RVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEP 117
           R + VP   ++  V E L    L  Y++R    LSGG +++++ A AL   P ++  DEP
Sbjct: 113 REKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEP 172

Query: 118 TSGMD 122
            + +D
Sbjct: 173 FAAID 177

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359

 Score = 75.7 bits (187), Expect = 6e-15
 Identities = 47/175 (26%), Positives = 73/175 (41%), Gaps = 7/175 (4%)

Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
           L +  L K +       P +N IS  +  GE   ++G +G GKTT  + L G  +P SG 
Sbjct: 5   LHIGHLSKSF----QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGE 60

Query: 403 AYVMNHSIRDSMDLVRSY---IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVN 459
             +   +I      +      +GY  Q   L   LT   ++ +        +      + 
Sbjct: 61  ISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIE 120

Query: 460 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARR 514
             L    +   + R    LSGG +++ + A AL  +P LI LDEP S +D   RR
Sbjct: 121 AMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRR 175

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348

 Score = 74.9 bits (185), Expect = 8e-15
 Identities = 46/175 (26%), Positives = 83/175 (47%), Gaps = 23/175 (13%)

Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
           ++ ++ L + + N      +++ +S  V  GE F +LG  GAGKT   +++ G   P SG
Sbjct: 1   MIEIESLSRKWKN-----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSG 55

Query: 402 NAYVMNHSI-------RDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLL 454
              +    +        D        I +  Q  +L   +  +++LEF  R++ +     
Sbjct: 56  RILLDGKDVTDLSPEKHD--------IAFVYQNYSLFPHMNVKKNLEFGMRMKKIKD--- 104

Query: 455 NTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 509
              V ++     + H  DR   TLSGG +++++ A AL+ NP ++ LDEP S +D
Sbjct: 105 PKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALD 159

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353

 Score = 71.5 bits (176), Expect = 1e-13
 Identities = 46/179 (25%), Positives = 87/179 (48%), Gaps = 22/179 (12%)

Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
           ++VK + K++    G   A++ ++  +  GE FG+LG +GAGKTT  +++ G   P++G 
Sbjct: 4   IIVKNVSKVFKK--GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61

Query: 403 AY----VMNHSIRDSMD-------LV-RSYIGYCPQFDALNDRLTPREHLEFYSRVRNVP 450
            Y    ++  + +  +        +V +++        AL   LT  E++ F      + 
Sbjct: 62  LYFDDRLVASNGKLIVPPEDRKIGMVFQTW--------ALYPNLTAFENIAFPLTNMKMS 113

Query: 451 SVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 509
              +   V E      + H  +   R LSG  +++++ A AL+ +P L+ LDEP S +D
Sbjct: 114 KEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLD 172

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240

 Score = 68.7 bits (169), Expect = 3e-13
 Identities = 56/204 (27%), Positives = 94/204 (46%), Gaps = 19/204 (9%)

Query: 365 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI-------RDSMDLV 417
           + F +G  +   LLG  GAGK+   +++ G +KP  G   +    I       R      
Sbjct: 18  VDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRG----- 71

Query: 418 RSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRT 477
              IG+ PQ  AL   L+   ++ +   +RNV  V  +  V E   K  + H  DR+   
Sbjct: 72  ---IGFVPQDYALFPHLSVYRNIAY--GLRNVERVERDRRVREMAEKLGIAHLLDRKPAR 126

Query: 478 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHN 536
           LSGG +++++ A AL+  P L+ LDEP S +D   +  L   +     E    ++  +H+
Sbjct: 127 LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHD 186

Query: 537 MEECEALCTKLTIMVNGQFTCLGS 560
           + E   L  ++ +M+NG+    G 
Sbjct: 187 LIEAAMLADEVAVMLNGRIVEKGK 210

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240

 Score = 46.0 bits (110), Expect = 1e-05
 Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 1/115 (0%)

Query: 60  RNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTS 119
           RNV  V  +  V E   K  + H  DR+   LSGG +++++ A AL+  P L+ LDEP S
Sbjct: 96  RNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLS 155

Query: 120 GMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 173
            +D   +  L   +     E    ++  +H++ E   L  ++ +M+NG+    G 
Sbjct: 156 AVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGK 210

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306

 Score = 68.4 bits (168), Expect = 9e-13
 Identities = 52/199 (26%), Positives = 84/199 (42%), Gaps = 40/199 (20%)

Query: 359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLV 417
           +  +  +SF V  G+   L+G +GAGK+T  ++L      +SG   +    I   +   +
Sbjct: 67  RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASL 126

Query: 418 RSYIGYCPQFDAL-NDRLTPREHLEFYSR--------------------VRNVPSVLLNT 456
           RS+IG  PQ   L ND  T  +++  Y R                    +   P     T
Sbjct: 127 RSHIGVVPQDTVLFND--TIADNIR-YGRVTAGNDEVEAAAQAAGIHDAIMAFPEG-YRT 182

Query: 457 IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFL 516
            V E            R ++ LSGG K++++ A  +L  P +I LDE TS +D    R +
Sbjct: 183 QVGE------------RGLK-LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAI 229

Query: 517 WTCIERAVSEGRCVILTSH 535
              + + V   R  I+ +H
Sbjct: 230 QASLAK-VCANRTTIVVAH 247

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 91  LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 148
           LSGG K++++ A  +L  P +I LDE TS +D    R +   + + V   R  I+ +H
Sbjct: 191 LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAK-VCANRTTIVVAH 247

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224

 Score = 66.8 bits (164), Expect = 1e-12
 Identities = 48/203 (23%), Positives = 88/203 (43%), Gaps = 9/203 (4%)

Query: 341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS 400
           ++L  + + K+          +  IS  V +GE   ++G +G+GK+T   +L     PT 
Sbjct: 3   EILRAENIKKVI----RGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTE 58

Query: 401 GNAYVMNHSI----RDSMDLVRS-YIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLN 455
           G  ++    +       + L+R+  +G+  QF  L   LT  E++         P     
Sbjct: 59  GKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAK 118

Query: 456 TIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRF 515
                 L++  LG    R+   LSGG +++++ A AL   P L+F DEPT  +D    + 
Sbjct: 119 ERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKR 178

Query: 516 LWTCIERAVSEGRCVILTSHNME 538
           +     +    G  +++ +H  E
Sbjct: 179 VMDIFLKINEGGTSIVMVTHERE 201

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224

 Score = 40.9 bits (97), Expect = 4e-04
 Identities = 30/119 (25%), Positives = 51/119 (42%)

Query: 33  YIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLS 92
            +G+  QF  L   LT  E++         P           L++  LG    R+   LS
Sbjct: 83  KLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELS 142

Query: 93  GGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 151
           GG +++++ A AL   P L+F DEPT  +D    + +     +    G  +++ +H  E
Sbjct: 143 GGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERE 201

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260

 Score = 65.3 bits (160), Expect = 5e-12
 Identities = 45/209 (21%), Positives = 85/209 (40%), Gaps = 51/209 (24%)

Query: 354 NSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKML------TGAIKPTSGNAYVMN 407
             +     +  I+F +  G    L+G  G+GK+T  K+L       G IK       +  
Sbjct: 28  PKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIK-------IGG 80

Query: 408 HSIRD-SMDLVRSYIGYCPQFDAL-NDRLTPREHLEF-------------------YSRV 446
            ++   + + +RS IG  PQ   L N+  T + ++ +                   Y  +
Sbjct: 81  KNVNKYNRNSIRSIIGIVPQDTILFNE--TIKYNILYGKLDATDEEVIKATKSAQLYDFI 138

Query: 447 RNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTS 506
             +P    +TIV              + ++ LSGG +++++ A  LL +P ++  DE TS
Sbjct: 139 EALPKKW-DTIVGN------------KGMK-LSGGERQRIAIARCLLKDPKIVIFDEATS 184

Query: 507 GMDPGARRFLWTCIERAVSEGRCVILTSH 535
            +D          +E  + + R +I+ +H
Sbjct: 185 SLDSKTEYLFQKAVED-LRKNRTLIIIAH 212

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260

 Score = 45.6 bits (109), Expect = 1e-05
 Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 2/64 (3%)

Query: 85  DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVI 144
           ++ ++ LSGG +++++ A  LL +P ++  DE TS +D          +E  + + R +I
Sbjct: 151 NKGMK-LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVED-LRKNRTLI 208

Query: 145 LTSH 148
           + +H
Sbjct: 209 IIAH 212

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339

 Score = 65.5 bits (159), Expect = 1e-11
 Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 6/73 (8%)

Query: 85  DREVRTLSGGNKR------KLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS 138
           +R +  LSGG +       +L+ ++ L G   L+ LDEPT  +D   RR L T +ER + 
Sbjct: 243 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK 302

Query: 139 EGRCVILTSHNME 151
           +   VIL SH+ E
Sbjct: 303 KIPQVILVSHDEE 315

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339

 Score = 65.5 bits (159), Expect = 1e-11
 Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 6/73 (8%)

Query: 472 DREVRTLSGGNKR------KLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS 525
           +R +  LSGG +       +L+ ++ L G   L+ LDEPT  +D   RR L T +ER + 
Sbjct: 243 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK 302

Query: 526 EGRCVILTSHNME 538
           +   VIL SH+ E
Sbjct: 303 KIPQVILVSHDEE 315

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243

 Score = 63.6 bits (156), Expect = 2e-11
 Identities = 52/199 (26%), Positives = 87/199 (43%), Gaps = 39/199 (19%)

Query: 359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLV 417
           +  +  ISF           G +G GK+T F +L    +PT+G   +    I + S++  
Sbjct: 15  EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENW 74

Query: 418 RSYIGYCPQFDAL-NDRLTPREHLEFYSR--------------------VRNVPSVLLNT 456
           RS IG+  Q  A+     T RE+L +                       V N+P   LNT
Sbjct: 75  RSQIGFVSQDSAIMAG--TIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQ-LNT 131

Query: 457 IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFL 516
            V E            R V+ +SGG +++L+ A A L NP ++ LDE T+ +D  +   +
Sbjct: 132 EVGE------------RGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMV 178

Query: 517 WTCIERAVSEGRCVILTSH 535
              ++  + +GR  ++ +H
Sbjct: 179 QKALDS-LMKGRTTLVIAH 196

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243

 Score = 43.2 bits (103), Expect = 1e-04
 Identities = 19/64 (29%), Positives = 39/64 (60%), Gaps = 2/64 (3%)

Query: 85  DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVI 144
           +R V+ +SGG +++L+ A A L NP ++ LDE T+ +D  +   +   ++  + +GR  +
Sbjct: 135 ERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDS-LMKGRTTL 192

Query: 145 LTSH 148
           + +H
Sbjct: 193 VIAH 196

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235

 Score = 63.3 bits (155), Expect = 2e-11
 Identities = 45/174 (25%), Positives = 81/174 (46%), Gaps = 11/174 (6%)

Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI-KPTS 400
           ++ +K + K Y   +    A+  ++  +  GE   ++G +G+GK+T   ++ G + KPT 
Sbjct: 1   MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNII-GCLDKPTE 59

Query: 401 GNAYVMNHSI----RDSMDLVRS-YIGYCPQFDALNDRLTPREHLE---FYSRVRNVPSV 452
           G  Y+ N        D +  +R   IG+  Q   L   LT  E++E    +     +   
Sbjct: 60  GEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGE 119

Query: 453 LLNTIVNESLNKFALGH-YSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPT 505
                  E L    L   +++ +   LSGG +++++ A AL  NPP+I  D+PT
Sbjct: 120 ERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPT 173

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148

 Score = 59.0 bits (143), Expect = 1e-10
 Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 9/118 (7%)

Query: 41  DALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYS-DREVRTLSGGNK--- 96
            AL+         E ++         +     E+  +  +     +R +  LSGG +   
Sbjct: 9   AALS--KIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIAL 66

Query: 97  ---RKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 151
               +L+ ++ L G   L+ LDEPT  +D   RR L T +ER + +   VIL SH+ E
Sbjct: 67  GLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE 124

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148

 Score = 59.0 bits (143), Expect = 1e-10
 Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 9/118 (7%)

Query: 428 DALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYS-DREVRTLSGGNK--- 483
            AL+         E ++         +     E+  +  +     +R +  LSGG +   
Sbjct: 9   AALS--KIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIAL 66

Query: 484 ---RKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 538
               +L+ ++ L G   L+ LDEPT  +D   RR L T +ER + +   VIL SH+ E
Sbjct: 67  GLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE 124

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582

 Score = 61.8 bits (151), Expect = 3e-10
 Identities = 39/175 (22%), Positives = 77/175 (44%), Gaps = 42/175 (24%)

Query: 359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLV 417
            PA+  I+  +  G+   L+G +G+GK+T   ++T       G+  +  H +R+ ++  +
Sbjct: 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASL 415

Query: 418 RSYIGYCPQ----FD---------ALNDRLTPRE----------HLEFYSRVRNVPSVLL 454
           R+ +    Q    F+         A  +  +  +            +F   +  + +  L
Sbjct: 416 RNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAM-DF---INKMDNG-L 470

Query: 455 NTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 509
           +TI+ E              V  LSGG +++++ A ALL + P++ LDE TS +D
Sbjct: 471 DTIIGE------------NGVL-LSGGQRQRIAIARALLRDSPILILDEATSALD 512

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582

 Score = 60.3 bits (147), Expect = 9e-10
 Identities = 46/176 (26%), Positives = 79/176 (44%), Gaps = 40/176 (22%)

Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMD 415
             KPA++ +SF + +G+   L+G +G+GK+T   + T      SG+  +  H +RD  + 
Sbjct: 354 KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLT 413

Query: 416 LVRSYIGYCPQ----FD---------ALNDRLTPRE--------HL-EFYSRVRNVPSVL 453
            +R +     Q    F+         A     T  +        H  EF   + N+P   
Sbjct: 414 NLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEF---IENMPQG- 469

Query: 454 LNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 509
           L+T++ E                 LSGG +++++ A ALL + P++ LDE TS +D
Sbjct: 470 LDTVIGE------------NGTS-LSGGQRQRVAIARALLRDAPVLILDEATSALD 512

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247

 Score = 57.5 bits (140), Expect = 2e-09
 Identities = 40/198 (20%), Positives = 89/198 (44%), Gaps = 34/198 (17%)

Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMD 415
            +   ++ I+  + +GE  G++G +G+GK+T  K++     P +G   +  H +     +
Sbjct: 20  DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPN 79

Query: 416 LVRSYIGYCPQFDALNDRLTPREHLEFYSRVRN-----VPSVLLNTIVNESLNKFALGH- 469
            +R  +G   Q           +++     + +      P + +  ++  +  K A  H 
Sbjct: 80  WLRRQVGVVLQ-----------DNVLLNRSIIDNISLANPGMSVEKVIYAA--KLAGAHD 126

Query: 470 --------YS----DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW 517
                   Y+    ++    LSGG +++++ A AL+ NP ++  DE TS +D  +   + 
Sbjct: 127 FISELREGYNTIVGEQGAG-LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 185

Query: 518 TCIERAVSEGRCVILTSH 535
             + + + +GR VI+ +H
Sbjct: 186 RNMHK-ICKGRTVIIIAH 202

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247

 Score = 44.4 bits (106), Expect = 4e-05
 Identities = 19/58 (32%), Positives = 36/58 (62%), Gaps = 1/58 (1%)

Query: 91  LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 148
           LSGG +++++ A AL+ NP ++  DE TS +D  +   +   + + + +GR VI+ +H
Sbjct: 146 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK-ICKGRTVIIIAH 202

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score = 58.9 bits (143), Expect = 3e-09
 Identities = 46/211 (21%), Positives = 84/211 (39%), Gaps = 56/211 (26%)

Query: 355 SKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM 414
           S+     +  ++  V  G+   L+G +G GK+TT +++     P  G   +    IR  +
Sbjct: 399 SRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRT-I 457

Query: 415 DL--VRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSD 472
           ++  +R  IG   Q              E          VL  T + E++ ++     + 
Sbjct: 458 NVRYLREIIGVVSQ--------------E---------PVLFATTIAENI-RYGREDVTM 493

Query: 473 REVR----------------------------TLSGGNKRKLSTAIALLGNPPLIFLDEP 504
            E+                              LSGG K++++ A AL+ NP ++ LDE 
Sbjct: 494 DEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEA 553

Query: 505 TSGMDPGARRFLWTCIERAVSEGRCVILTSH 535
           TS +D  +   +   +++A  EGR  I+ +H
Sbjct: 554 TSALDTESEAVVQAALDKA-REGRTTIVIAH 583

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score = 58.5 bits (142), Expect = 4e-09
 Identities = 49/195 (25%), Positives = 93/195 (47%), Gaps = 32/195 (16%)

Query: 360  PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVR 418
            P +  +S  V +G+   L+G +G GK+T  ++L     P +G+ ++    I+  ++  +R
Sbjct: 1047 PVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLR 1106

Query: 419  SYIGYCPQ----FD---------ALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL-NK 464
            + +G   Q    FD           N R+   E +   ++  N    +   I  +SL +K
Sbjct: 1107 AQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEAN----IHQFI--DSLPDK 1160

Query: 465  FALGHYSDREV----RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCI 520
            +      +  V      LSGG K++++ A AL+  P ++ LDE TS +D  + + +   +
Sbjct: 1161 Y------NTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEAL 1214

Query: 521  ERAVSEGRCVILTSH 535
            ++A  EGR  I+ +H
Sbjct: 1215 DKA-REGRTCIVIAH 1228

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 1/59 (1%)

Query: 90  TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 148
            LSGG K++++ A AL+ NP ++ LDE TS +D  +   +   +++A  EGR  I+ +H
Sbjct: 526 QLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKA-REGRTTIVIAH 583

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score = 41.9 bits (99), Expect = 6e-04
 Identities = 21/58 (36%), Positives = 37/58 (63%), Gaps = 1/58 (1%)

Query: 91   LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 148
            LSGG K++++ A AL+  P ++ LDE TS +D  + + +   +++A  EGR  I+ +H
Sbjct: 1172 LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAH 1228

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263

 Score = 55.7 bits (135), Expect = 8e-09
 Identities = 45/186 (24%), Positives = 78/186 (41%), Gaps = 22/186 (11%)

Query: 336 GADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA 395
           G+    ++ V +L K +    G+   +  I+  +  GE   ++G +G+GK+T  + L   
Sbjct: 18  GSHMLQMIDVHQLKKSF----GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLL 73

Query: 396 IKPTSGNAYVMNHSIRDS---MDLVRSYIGYC-------PQFDAL-NDRLTPREHLEFYS 444
                G   +   +++     ++ VR  +G         P    L N  L P        
Sbjct: 74  EDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPM------- 126

Query: 445 RVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEP 504
           +VR  P         E L+K  L   +     +LSGG  ++++ A AL   P ++  DEP
Sbjct: 127 KVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEP 186

Query: 505 TSGMDP 510
           TS +DP
Sbjct: 187 TSALDP 192

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578

 Score = 55.7 bits (135), Expect = 2e-08
 Identities = 49/183 (26%), Positives = 76/183 (41%), Gaps = 51/183 (27%)

Query: 355 SKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-S 413
           +    P +  I+  + +GE    +G++G GK+T   ++      TSG   +  H+I+D  
Sbjct: 350 NDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFL 409

Query: 414 MDLVRSYIGYCPQ----FDALNDRLTPRE-----------------------HLEFYSRV 446
              +R+ IG   Q    F       T +E                       H +F   +
Sbjct: 410 TGSLRNQIGLVQQDNILFSD-----TVKENILLGRPTATDEEVVEAAKMANAH-DF---I 460

Query: 447 RNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTS 506
            N+P    +T V E            R V+ LSGG K++LS A   L NPP++ LDE TS
Sbjct: 461 MNLPQGY-DTEVGE------------RGVK-LSGGQKQRLSIARIFLNNPPILILDEATS 506

Query: 507 GMD 509
            +D
Sbjct: 507 ALD 509

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578

 Score = 41.4 bits (98), Expect = 7e-04
 Identities = 18/33 (54%), Positives = 23/33 (69%)

Query: 90  TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 122
            LSGG K++LS A   L NPP++ LDE TS +D
Sbjct: 477 KLSGGQKQRLSIARIFLNNPPILILDEATSALD 509

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362

 Score = 54.9 bits (133), Expect = 3e-08
 Identities = 46/176 (26%), Positives = 82/176 (46%), Gaps = 23/176 (13%)

Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
           + ++ + K +    G   A+N I+  +  GE   LLG +G+GK+T    + G  KPTSG 
Sbjct: 4   IKLENIVKKF----GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGK 59

Query: 403 AY----VMNH---SIRD-SMDLV-RSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVL 453
            Y     +       R+  +  V +++        AL   +T  +++ F   +R  P   
Sbjct: 60  IYFDEKDVTELPPKDRNVGL--VFQNW--------ALYPHMTVYKNIAFPLELRKAPREE 109

Query: 454 LNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 509
           ++  V E      +    +R    LSGG +++++ A AL+  P ++ LDEP S +D
Sbjct: 110 IDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLD 165

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 55/271 (20%), Positives = 102/271 (37%), Gaps = 51/271 (18%)

Query: 319 VSLE------EDDVRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRG 372
           V +E      E+   +  E+ +   ++               S    P +  I+F + RG
Sbjct: 5   VVMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTPVLKDINFKIERG 64

Query: 373 ECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQ----FD 428
           +   + G  GAGKT+   M+ G ++P+ G                   I +C Q      
Sbjct: 65  QLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK------------HSGRISFCSQNSWIMP 112

Query: 429 ALNDRLTPREHL-------EFYSRVRNVPSVLLNTIVNESLNKFALGHYSDR-EV--R-- 476
                 T +E++         Y  V     +       E ++KFA     D   +     
Sbjct: 113 G-----TIKENIIGVSYDEYRYRSVIKACQLE------EDISKFAEK---DNIVLGEGGI 158

Query: 477 TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT-CIERAVSEGRCVILTSH 535
           TLSGG + ++S A A+  +  L  LD P   +D    + ++  C+ + ++  +  IL + 
Sbjct: 159 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA-NKTRILVTS 217

Query: 536 NMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
            ME  +    K+ I+  G     G+ + L++
Sbjct: 218 KMEHLKK-ADKILILHEGSSYFYGTFSELQN 247

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372

 Score = 51.1 bits (123), Expect = 5e-07
 Identities = 48/176 (27%), Positives = 87/176 (49%), Gaps = 23/176 (13%)

Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
           + ++ L K +    G   AVN+++  +  GE   LLG +G GKTTT +M+ G  +PT G 
Sbjct: 12  VKLENLTKRF----GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGR 67

Query: 403 AY----VMNH---SIRD-SMDLV-RSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVL 453
            Y     + +     R+ SM  V +SY        A+   +T  E++ F  +++  P   
Sbjct: 68  IYFGDRDVTYLPPKDRNISM--VFQSY--------AVWPHMTVYENIAFPLKIKKFPKDE 117

Query: 454 LNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 509
           ++  V  +     +    +R    LSGG +++++ A A++  P ++ +DEP S +D
Sbjct: 118 IDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD 173

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271

 Score = 49.8 bits (120), Expect = 7e-07
 Identities = 42/203 (20%), Positives = 75/203 (36%), Gaps = 47/203 (23%)

Query: 360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDL--V 417
             +  ++F +  G+   L+G NG+GK+T   +L    +PT G   +    +    D   +
Sbjct: 33  QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQ-YDHHYL 91

Query: 418 RSYIGYCPQ----FDALNDRLTPREHLEFYSRVRNVP-----------------SVL--- 453
            + +    Q    F       + RE++  Y   R                    S     
Sbjct: 92  HTQVAAVGQEPLLFGR-----SFRENIA-YGLTRTPTMEEITAVAMESGAHDFISGFPQG 145

Query: 454 LNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR 513
            +T V E               + LSGG ++ ++ A AL+  P L+ LD  TS +D G +
Sbjct: 146 YDTEVGE------------TGNQ-LSGGQRQAVALARALIRKPRLLILDNATSALDAGNQ 192

Query: 514 RFLWTCIERAVSE-GRCVILTSH 535
             +   +  +     R V+L + 
Sbjct: 193 LRVQRLLYESPEWASRTVLLITQ 215

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.4 bits (122), Expect = 7e-07
 Identities = 85/553 (15%), Positives = 177/553 (32%), Gaps = 170/553 (30%)

Query: 26  TIDKNLSYIGYCPQFDAL-ND----------RLTP----REHLEFYSRVRNVPSVLLN-- 68
               ++    Y  Q D L ND          RL P    R+ L     +R   +VL++  
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL---ELRPAKNVLIDGV 158

Query: 69  ------TIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 122
                  +  +    + +    D ++  L+  N     T + +L           TS  D
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218

Query: 123 PGA-------------RRFL---------------WTCIERAVS--EGRC-VILTSHNME 151
             +             RR L                    +A +     C ++LT+   +
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN--AKAWNAFNLSCKILLTTRFKQ 276

Query: 152 ECEALCTKLTIMVNGQFTCLGSATHLKSKSM---ALPVSGNDLGR----GDP-VRSELSR 203
             + L    T  ++     +   T  + KS+    L     DL R     +P   S ++ 
Sbjct: 277 VTDFLSAATTTHISLDHHSMT-LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE 335

Query: 204 ALNDGSGSGIRNSARPEVSGFYNENIDGKNLTCMACHGALYSAINLSIEY-------KVF 256
           ++ DG        A  +    +      K++ C      L + I  S+         K+F
Sbjct: 336 SIRDGL-------ATWD---NW------KHVNCDK----LTTIIESSLNVLEPAEYRKMF 375

Query: 257 SRC--FTRSNGTRLVAVNI--------WAWRIIGKNLTCMACHGALYSAINLSIEYKVFS 306
            R   F  S        +I        W + +I  ++  +      YS +    +    S
Sbjct: 376 DRLSVFPPS-------AHIPTILLSLIW-FDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427

Query: 307 RCFTRSNLHPVPVSLE---EDDVRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVN 363
                  +  + + L+   E++    R  V+H            + K + +     P ++
Sbjct: 428 -------IPSIYLELKVKLENEYALHRSIVDH----------YNIPKTFDSDDLIPPYLD 470

Query: 364 QISF--------GVGRGE---CFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 412
           Q  +         +   E    F ++ L+       F+ L   I+     A+  + SI +
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLFRMVFLD-------FRFLEQKIRHD-STAWNASGSILN 522

Query: 413 SMDLVRSYIGY----CPQFDALNDRLTPREHLEFYSRVRNVPSVLLNT----IVNESLNK 464
           ++  ++ Y  Y     P+++ L + +     L+F   +  +   L+ +    ++  +L  
Sbjct: 523 TLQQLKFYKPYICDNDPKYERLVNAI-----LDF---LPKIEENLICSKYTDLLRIALMA 574

Query: 465 FALGHYSD--REV 475
                + +  ++V
Sbjct: 575 EDEAIFEEAHKQV 587

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 6e-05
 Identities = 45/337 (13%), Positives = 96/337 (28%), Gaps = 92/337 (27%)

Query: 232 KNLTCMACHGALYSAINLSIEYKVFSRCFTRSNGTRLVAVNIWAWRIIGKNLTCMACHGA 291
            N  C        S ++   E           +GT  +    W      + +        
Sbjct: 31  DNFDCKDVQDMPKSILS-KEEIDHIIMSKDAVSGTLRL---FWTLLSKQEEMVQKFVEEV 86

Query: 292 -------LYSAINL-----SIEYKVFSRCFTRSNLHPVPVSLEEDDVRKERERVEHGADS 339
                  L S I       S+  +++     R  L+       + +V     R++     
Sbjct: 87  LRINYKFLMSPIKTEQRQPSMMTRMYIEQ--RDRLYNDNQVFAKYNV----SRLQP---- 136

Query: 340 GDVLVVKR-LFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI-- 396
              L +++ L ++       +PA N +  GV            G+GKT     +   +  
Sbjct: 137 --YLKLRQALLEL-------RPAKNVLIDGVL-----------GSGKTW----VALDVCL 172

Query: 397 -----KPTSGNAYVMN----HSIRDSMD-LVRSYIGYCPQFDALNDRLTP--------RE 438
                       + +N    +S    ++ L +      P + + +D  +         + 
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232

Query: 439 HLEFYSRVRNVPSVLLNTIV-----NESLNKFALGHYSDREVRTL--SGGNKRKLSTAIA 491
            L    + +   + LL  ++      ++ N F L        + L  +    R       
Sbjct: 233 ELRRLLKSKPYENCLL--VLLNVQNAKAWNAFNLS------CKILLTT----RFKQVTDF 280

Query: 492 LLGNPPL-IFLDEPTSGMDPG-ARRFLWTCIERAVSE 526
           L       I LD  +  + P   +  L   ++    +
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372

 Score = 49.9 bits (120), Expect = 1e-06
 Identities = 51/182 (28%), Positives = 88/182 (48%), Gaps = 29/182 (15%)

Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
           + +  ++K++    G   AV ++S  V  GE   LLG +G GKTTT +M+ G  +P+ G 
Sbjct: 4   VRLVDVWKVF----GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQ 59

Query: 403 AY----VMNHSI---------RD-SMDLV-RSYIGYCPQFDALNDRLTPREHLEFYSRVR 447
            Y    ++             RD +M  V +SY        AL   +T  +++ F  ++R
Sbjct: 60  IYIGDKLVADPEKGIFVPPKDRDIAM--VFQSY--------ALYPHMTVYDNIAFPLKLR 109

Query: 448 NVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSG 507
            VP   ++  V E      L    +R+ R LSGG +++++   A++  P +  +DEP S 
Sbjct: 110 KVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSN 169

Query: 508 MD 509
           +D
Sbjct: 170 LD 171

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359

 Score = 49.9 bits (120), Expect = 1e-06
 Identities = 60/177 (33%), Positives = 86/177 (48%), Gaps = 25/177 (14%)

Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
           + V  L K +    G   AV+ +SF V  GE   LLG +G GKTTT  ML G  KPTSG 
Sbjct: 4   IRVVNLKKYF----GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGE 59

Query: 403 AY----VMNH---SIRD-SMDLV-RSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVL 453
            Y    ++N      R+  M  V ++Y        AL   +T  E++ F  R R +    
Sbjct: 60  IYFDDVLVNDIPPKYREVGM--VFQNY--------ALYPHMTVFENIAFPLRARRISKDE 109

Query: 454 LNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFL-DEPTSGMD 509
           +   V E   K  + +  DR+   LSGG +++++ A AL+  P  + L DEP S +D
Sbjct: 110 VEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPK-VLLFDEPLSNLD 165

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229

 Score = 48.3 bits (116), Expect = 2e-06
 Identities = 49/225 (21%), Positives = 91/225 (40%), Gaps = 48/225 (21%)

Query: 355 SKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN-------AYV-- 405
            +G  P +  I+F + RG+   + G  GAGKT+   M+ G ++P+ G        ++   
Sbjct: 17  EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQ 76

Query: 406 ----MNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNES 461
               M  +I+++       I +   +D              Y  V     +       E 
Sbjct: 77  FSWIMPGTIKEN-------IIFGVSYDE-----------YRYRSVIKACQLE------ED 112

Query: 462 LNKFALGHYSDR-EV--R--TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFL 516
           ++KFA     D   +     TLSGG + ++S A A+  +  L  LD P   +D    + +
Sbjct: 113 ISKFAEK---DNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEI 169

Query: 517 WT-CIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 560
           +  C+ + ++  +  IL +  ME  +    K+ I+  G     G+
Sbjct: 170 FESCVCKLMA-NKTRILVTSKMEHLKK-ADKILILHEGSSYFYGT 212

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371

 Score = 49.5 bits (118), Expect = 2e-06
 Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 8/87 (9%)

Query: 72  NESLNKFALGHYSDREVRTLSGGNKRKLSTAIAL-------LGNPPLIFLDEPTSGMDPG 124
            +              +  LSGG +  ++ ++ L             I LDEPT  +D  
Sbjct: 262 TKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDEN 321

Query: 125 ARRFLWTCIERAVSEGRCVILTSHNME 151
            R  L     + V     +I+ +H+ E
Sbjct: 322 RRAKLAEIFRK-VKSIPQMIIITHHRE 347

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371

 Score = 49.5 bits (118), Expect = 2e-06
 Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 8/87 (9%)

Query: 459 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIAL-------LGNPPLIFLDEPTSGMDPG 511
            +              +  LSGG +  ++ ++ L             I LDEPT  +D  
Sbjct: 262 TKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDEN 321

Query: 512 ARRFLWTCIERAVSEGRCVILTSHNME 538
            R  L     + V     +I+ +H+ E
Sbjct: 322 RRAKLAEIFRK-VKSIPQMIIITHHRE 347

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587

 Score = 48.3 bits (116), Expect = 5e-06
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 1/73 (1%)

Query: 355 SKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-S 413
            + T P ++ ++F V  G    +LG  G+GK+T   ++   I P  G   V    +R   
Sbjct: 352 FENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVK 411

Query: 414 MDLVRSYIGYCPQ 426
           +  +R +I   PQ
Sbjct: 412 LKDLRGHISAVPQ 424

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* Length = 365

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 6/69 (8%)

Query: 86  REVRTLSGGNKRKLSTAIAL----LGNPPL--IFLDEPTSGMDPGARRFLWTCIERAVSE 139
           R  R LSGG +  +S ++A+    + +  L   F+DE  S +D   +  + + ++     
Sbjct: 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERL 334

Query: 140 GRCVILTSH 148
            + ++  +H
Sbjct: 335 NKVIVFITH 343

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* Length = 365

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 6/69 (8%)

Query: 473 REVRTLSGGNKRKLSTAIAL----LGNPPL--IFLDEPTSGMDPGARRFLWTCIERAVSE 526
           R  R LSGG +  +S ++A+    + +  L   F+DE  S +D   +  + + ++     
Sbjct: 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERL 334

Query: 527 GRCVILTSH 535
            + ++  +H
Sbjct: 335 NKVIVFITH 343

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237

 Score = 45.2 bits (108), Expect = 2e-05
 Identities = 45/231 (19%), Positives = 86/231 (37%), Gaps = 58/231 (25%)

Query: 355 SKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM 414
           ++   P +N I+F +  G    ++G  G GK++    L   +    G+            
Sbjct: 14  ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVA---------- 63

Query: 415 DLVRSYIGYCPQ----FDALNDRLTPRE--------HLEFYSRVRNVPSVLLNTIVNESL 462
             ++  + Y PQ     +      + RE           +Y  V               +
Sbjct: 64  --IKGSVAYVPQQAWIQND-----SLRENILFGCQLEEPYYRSV---------------I 101

Query: 463 NKFALGH------YSDR-EV--R--TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPG 511
              AL          DR E+  +   LSGG K+++S A A+  N  +   D+P S +D  
Sbjct: 102 QACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAH 161

Query: 512 ARRFLWT-CI-ERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 560
             + ++   I  + + + +  IL +H+M         + +M  G+ + +GS
Sbjct: 162 VGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQ-VDVIIVMSGGKISEMGS 211

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262

 Score = 44.5 bits (106), Expect = 4e-05
 Identities = 42/192 (21%), Positives = 71/192 (36%), Gaps = 34/192 (17%)

Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
            L V  L K Y    G    +  +S     G+   ++G +G+GK+T  + +    KP+ G
Sbjct: 6   KLHVIDLHKRY----GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEG 61

Query: 402 NAYVMNHSIRDS--------------MDLVRSYIGYC-------PQFDAL-NDRLTPREH 439
              V   +I                 + L+R+ +               L N    P   
Sbjct: 62  AIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPI-- 119

Query: 440 LEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREV-RTLSGGNKRKLSTAIALLGNPPL 498
                +V  +          + L K  +   +  +    LSGG ++++S A AL   P +
Sbjct: 120 -----QVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDV 174

Query: 499 IFLDEPTSGMDP 510
           +  DEPTS +DP
Sbjct: 175 LLFDEPTSALDP 186

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	566
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	100.0
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	100.0
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	100.0
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	100.0
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	100.0
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	100.0
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	100.0
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	100.0
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	100.0
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	100.0
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	100.0
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	100.0
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	100.0
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	100.0
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	100.0
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	100.0
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	100.0
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	100.0
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	100.0
1b0u_A	262	Histidine permease; ABC transporter, transport pro	100.0
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	100.0
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	100.0
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	100.0
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	100.0
1g6h_A	257	High-affinity branched-chain amino acid transport	100.0
1ji0_A	240	ABC transporter; ATP binding protein, structural g	100.0
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	100.0
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	100.0
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	100.0
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	100.0
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	100.0
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	100.0
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	100.0
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	100.0
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	100.0
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	100.0
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	100.0
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	100.0
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	100.0
1sgw_A	214	Putative ABC transporter; structural genomics, P p	100.0
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	100.0
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	100.0
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	100.0
2ghi_A	260	Transport protein; multidrug resistance protein, M	100.0
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	100.0
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	100.0
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	100.0
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	100.0
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	100.0
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	100.0
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	100.0
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	100.0
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	100.0
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	100.0
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	100.0
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	100.0
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	100.0
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	100.0
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	100.0
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	100.0
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	100.0
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	100.0
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	100.0
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	100.0
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	100.0
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	100.0
1b0u_A	262	Histidine permease; ABC transporter, transport pro	100.0
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	100.0
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	100.0
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	100.0
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	100.0
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	100.0
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	100.0
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	100.0
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	100.0
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	100.0
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	100.0
1g6h_A	257	High-affinity branched-chain amino acid transport	100.0
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
1ji0_A	240	ABC transporter; ATP binding protein, structural g	100.0
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	100.0
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	100.0
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	100.0
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	100.0
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	100.0
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	100.0
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	100.0
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	100.0
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	100.0
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	100.0
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	100.0
1sgw_A	214	Putative ABC transporter; structural genomics, P p	100.0
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	100.0
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	99.98
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	99.97
2ghi_A	260	Transport protein; multidrug resistance protein, M	99.97
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	99.97
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	99.97
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	99.97
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	99.97
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	99.97
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.96
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.96
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	99.96
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	99.96
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	99.96
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	99.96
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	99.96
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	99.96
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.95
1e69_A	322	Chromosome segregation SMC protein; structural mai	99.94
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.94
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.93
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	99.93
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	99.93
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	99.92
2og2_A	359	Putative signal recognition particle receptor; nuc	99.91
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.91
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.91
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	99.9
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	99.9
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.9
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.89
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	99.88
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.88
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	99.88
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	99.88
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	99.87
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.87
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	99.87
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	99.87
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	99.87
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	99.87
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	99.86
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	99.85
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	99.85
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	99.85
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	99.83
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	99.83
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	99.83
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	99.83
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	99.82
4a74_A	231	DNA repair and recombination protein RADA; hydrola	99.8
2eyu_A	261	Twitching motility protein PILT; pilus retraction	99.8
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	99.79
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.79
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	99.79
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	99.79
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	99.78
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	99.77
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	99.77
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	99.76
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	99.76
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	99.75
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	99.75
1e69_A	322	Chromosome segregation SMC protein; structural mai	99.74
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	99.74
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.72
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.72
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	99.71
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	99.7
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.68
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.68
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	99.67
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	99.67
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	99.67
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	99.67
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	99.65
3kta_B	173	Chromosome segregation protein SMC; structural mai	99.65
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.64
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.64
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	99.63
3kta_B	173	Chromosome segregation protein SMC; structural mai	99.63
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	99.62
2cvh_A	220	DNA repair and recombination protein RADB; filamen	99.62
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	99.6
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	99.6
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	99.6
2ewv_A	372	Twitching motility protein PILT; pilus retraction	99.59
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	99.58
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	99.58
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	99.57
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	99.56
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	99.55
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	99.55
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.55
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.55
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	99.54
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	99.51
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.5
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	99.48
2og2_A	359	Putative signal recognition particle receptor; nuc	99.48
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	99.48
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	99.48
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	99.48
1p9r_A	418	General secretion pathway protein E; bacterial typ	99.46
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	99.45
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	99.45
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	99.45
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	99.44
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	99.44
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	99.42
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.42
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.42
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	99.41
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	99.4
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	99.39
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	99.37
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	99.36
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	99.35
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.34
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	99.32
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	99.32
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	99.31
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	99.31
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	99.31
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	99.3
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	99.3
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	99.3
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	99.25
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	99.24
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	99.23
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	99.2
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	99.19
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	99.19
4a74_A	231	DNA repair and recombination protein RADA; hydrola	99.19
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	99.18
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	99.17
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	99.17
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	99.14
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	99.14
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	99.13
2r6a_A	454	DNAB helicase, replicative helicase; replication,	99.1
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	99.09
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.08
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	99.08
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	99.07
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	99.07
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	99.06
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	99.06
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	99.01
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	99.01
2cvh_A	220	DNA repair and recombination protein RADB; filamen	99.0
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	98.99
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	98.96
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	98.94
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	98.93
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	98.93
2eyu_A	261	Twitching motility protein PILT; pilus retraction	98.91
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	98.88
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	98.82
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	98.8
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	98.78
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	98.77
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	98.73
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	98.7
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.65
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	98.63
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	98.62
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	98.56
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	98.53
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	98.52
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	98.5
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	98.49
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	98.48
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	98.47
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	98.47
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	98.47
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	98.46
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	98.46
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	98.46
3kta_A	182	Chromosome segregation protein SMC; structural mai	98.42
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	98.42
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.42
2ewv_A	372	Twitching motility protein PILT; pilus retraction	98.41
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	98.4
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	98.39
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	98.38
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.38
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	98.36
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	98.33
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	98.32
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	98.28
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	98.27
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.26
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	98.26
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	98.23
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	98.22
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	98.21
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	98.18
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.11
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	98.09
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	98.08
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.08
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	98.07
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	98.04
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	98.03
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	98.02
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.01
2z43_A	324	DNA repair and recombination protein RADA; archaea	97.96
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	97.95
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.95
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.93
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.93
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	97.92
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.91
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	97.91
2r6a_A	454	DNAB helicase, replicative helicase; replication,	97.91
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	97.91
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	97.9
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	97.89
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.87
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	97.86
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.83
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	97.81
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.81
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	97.77
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	97.74
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	97.68
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	97.66
1u94_A	356	RECA protein, recombinase A; homologous recombinat	97.64
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	97.64
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	97.64
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	97.62
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	97.61
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.61
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	97.6
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	97.58
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.56
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	97.56
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.55
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	97.53
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	97.51
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	97.39
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.38
1p9r_A	418	General secretion pathway protein E; bacterial typ	97.37
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	97.34
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	97.33
3ice_A	422	Transcription termination factor RHO; transcriptio	97.31
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.3
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	97.27
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	97.27
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	97.25
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	97.24
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.17
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	97.16
3bos_A	242	Putative DNA replication factor; P-loop containing	97.15
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	97.11
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	97.1
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	97.08
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	97.07
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.06
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.04
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	97.02
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	97.01
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	96.98
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	96.96
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	96.95
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.94
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	96.94
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	96.94
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.94
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	96.9
2wji_A	165	Ferrous iron transport protein B homolog; membrane	96.87
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.86
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	96.84
1xp8_A	366	RECA protein, recombinase A; recombination, radior	96.82
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	96.81
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	96.79
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	96.79
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.76
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	96.71
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	96.66
3io5_A	333	Recombination and repair protein; storage dimer, i	96.63
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	96.59
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.58
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	96.58
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	96.57
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	96.53
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	96.5
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	96.49
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.49
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.45
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.42
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.38
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	96.27
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	96.26
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	96.21
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	96.19
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.17
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.17
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	96.13
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	96.03
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	96.02
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	95.99
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	95.97
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	95.93
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	95.92
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	95.91
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	95.89
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	95.88
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	95.84
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	95.82
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	95.82
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	95.8
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	95.79
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	95.79
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	95.76
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	95.75
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	95.71
1via_A	175	Shikimate kinase; structural genomics, transferase	95.7
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	95.68
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	95.66
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	95.65
3co5_A	143	Putative two-component system transcriptional RES	95.64
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	95.63
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	95.57
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	95.55
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	95.51
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	95.51
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	95.48
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	95.45
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	95.41
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	95.4
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	95.36
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	95.36
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	95.3
2vli_A	183	Antibiotic resistance protein; transferase, tunica	95.2
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	95.2
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	95.16
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	95.14
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	95.13
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	95.1
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	95.07
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	95.04
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	95.03
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	94.97
2ged_A	193	SR-beta, signal recognition particle receptor beta	94.91
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	94.9
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	94.82
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	94.81
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	94.8
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	94.76
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	94.73
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	94.71
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	94.69
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	94.68
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	94.64
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	94.63
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	94.63
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	94.6
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	94.6
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	94.59
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	94.59
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	94.58
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	94.55
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	94.54
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	94.53
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	94.53
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	94.53
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	94.53
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	94.52
2orv_A	234	Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2	94.51
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	94.5
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	94.48
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	94.48
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	94.47
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	94.46
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	94.45
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	94.45
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	94.43
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	94.43
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	94.42
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	94.4
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	94.38
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	94.37
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	94.37
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	94.36
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	94.33
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	94.32
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	94.29
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	94.23
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	94.22
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	94.21
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	94.17
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	94.17
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	94.16
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	94.15
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	94.15
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	94.12
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	94.11
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	94.07
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	94.06
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	94.05
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	94.04
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	94.04
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	94.04
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	94.04
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	94.01

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=100.00  E-value=1.9e-70  Score=601.07  Aligned_cols=411  Identities=23%  Similarity=0.291  Sum_probs=311.1

Q ss_pred             CCcchHHHHHhccccCCCcc------------CCCCCcc-----cccccceeEEcCCCCCCCC---CCHHHHHHHHHHhc
Q psy7366           1 MGLTTTPKRVVTLLLTTQKV------------PGSNPTI-----DKNLSYIGYCPQFDALNDR---LTPREHLEFYSRVR   60 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~~------------~~~~~~~-----~~~~~~ig~v~Q~~~l~~~---~tv~e~l~~~~~~~   60 (566)
                      .||||++|+++|++.|+...            .+.....     ......+++++|+..+++.   .|+.|++...    
T Consensus        58 aGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~----  133 (538)
T 1yqt_A           58 TGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKA----  133 (538)
T ss_dssp             SSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHH----
T ss_pred             CCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhh----
Confidence            59999999999999775421            1111100     0112468899998654332   3888887531    


Q ss_pred             CCChhhHHHHHHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCC
Q psy7366          61 NVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEG  140 (566)
Q Consensus        61 ~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g  140 (566)
                           +..++++++++.+|++...++++.+|||||||||+||+||+.+|+|||||||||+||+.+++++.++|++++++|
T Consensus       134 -----~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g  208 (538)
T 1yqt_A          134 -----DETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEG  208 (538)
T ss_dssp             -----CSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTT
T ss_pred             -----hHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcC
Confidence                 112457889999999998999999999999999999999999999999999999999999999999999998889


Q ss_pred             CEEEEecCChhHHHhhcCEEEEEeCCEEEEecChhHHHhhccCccccCCCCCCCCccchhHHHhhccCCCCccccCCCcc
Q psy7366         141 RCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKSMALPVSGNDLGRGDPVRSELSRALNDGSGSGIRNSARPE  220 (566)
Q Consensus       141 ~tviiisH~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (566)
                      +|||+||||++++..+||||++|++|...+ |...        .+.         .....+...+......      . .
T Consensus       209 ~tvi~vsHd~~~~~~~~dri~vl~~~~~~~-~~~~--------~~~---------~~~~~~~~~~~~~~~~------~-~  263 (538)
T 1yqt_A          209 KSVLVVEHDLAVLDYLSDIIHVVYGEPGVY-GIFS--------QPK---------GTRNGINEFLRGYLKD------E-N  263 (538)
T ss_dssp             CEEEEECSCHHHHHHHCSEEEEEEEETTTE-EEEC--------CCE---------EHHHHHHHHHHTEETT------T-T
T ss_pred             CEEEEEeCCHHHHHHhCCEEEEEcCccccc-cccc--------chh---------hHHHHHHHHhhhccch------h-h
Confidence            999999999999999999999998642110 0000        000         0000000000000000      0 0


Q ss_pred             cccccccccCCccchhhhhhhHHHHHHHHHHHHhhhhheeeccCCeeeeeeccchhhchHHHHHHHHHHHHHHHHHHHHH
Q psy7366         221 VSGFYNENIDGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNGTRLVAVNIWAWRIIGKNLTCMACHGALYSAINLSI  300 (566)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (566)
                                                                   .                                  
T Consensus       264 ---------------------------------------------~----------------------------------  264 (538)
T 1yqt_A          264 ---------------------------------------------V----------------------------------  264 (538)
T ss_dssp             ---------------------------------------------E----------------------------------
T ss_pred             ---------------------------------------------h----------------------------------
Confidence                                                         0                                  


Q ss_pred             HHHHHhhhhcccccCCCCCCCcchhHHHHHHhhhcCCCCCCeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcC
Q psy7366         301 EYKVFSRCFTRSNLHPVPVSLEEDDVRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGL  380 (566)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~  380 (566)
                                ..............     .    .......+++++|+++.|+    + ..|+++||+|++||++||+||
T Consensus       265 ----------~~~~~~~~~~~~~~-----~----~~~~~~~~l~~~~l~~~~~----~-~~l~~~~~~i~~Ge~~~i~G~  320 (538)
T 1yqt_A          265 ----------RFRPYEIKFTKTGE-----R----VEIERETLVTYPRLVKDYG----S-FRLEVEPGEIKKGEVIGIVGP  320 (538)
T ss_dssp             ----------ECSSSCCCCCCSSG-----G----GSSCCCEEEEECCEEEEET----T-EEEEECCEEEETTCEEEEECC
T ss_pred             ----------cccccccccccCCc-----c----cccCCCeEEEEeeEEEEEC----C-EEEEeCccccCCCCEEEEECC
Confidence                      00000000000000     0    0001234799999999995    3 479999999999999999999


Q ss_pred             CCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHH
Q psy7366         381 NGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNE  460 (566)
Q Consensus       381 NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~  460 (566)
                      ||||||||+|+|+|+++|++|+|.+            ..+++|+||++..++.+||.+++....... ..   ..+.+.+
T Consensus       321 NGsGKSTLlk~l~Gl~~p~~G~i~~------------~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~-~~---~~~~~~~  384 (538)
T 1yqt_A          321 NGIGKTTFVKMLAGVEEPTEGKIEW------------DLTVAYKPQYIKADYEGTVYELLSKIDASK-LN---SNFYKTE  384 (538)
T ss_dssp             TTSSHHHHHHHHHTSSCCSBCCCCC------------CCCEEEECSSCCCCCSSBHHHHHHHHHHHH-HT---CHHHHHH
T ss_pred             CCCCHHHHHHHHhCCCCCCCeEEEE------------CceEEEEecCCcCCCCCcHHHHHHhhhccC-CC---HHHHHHH
Confidence            9999999999999999999999975            125999999987777899988876531110 01   1345778


Q ss_pred             HHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEccCHHH
Q psy7366         461 SLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS-EGRCVILTSHNMEE  539 (566)
Q Consensus       461 ~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~tvl~vsHd~~~  539 (566)
                      +++.+++.+..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|+++++ .|.|||+||||+++
T Consensus       385 ~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~  464 (538)
T 1yqt_A          385 LLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLM  464 (538)
T ss_dssp             TTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHH
T ss_pred             HHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence            99999998888999999999999999999999999999999999999999999999999999874 59999999999999


Q ss_pred             HHhhCCEEEEEEC--CEEEEecCcccc
Q psy7366         540 CEALCTKLTIMVN--GQFTCLGSATHL  564 (566)
Q Consensus       540 ~~~~~drv~~l~~--G~i~~~g~~~~l  564 (566)
                      +..+|||+++|++  |++...|+++++
T Consensus       465 ~~~~~drv~vl~~~~~~~~~~g~~~~~  491 (538)
T 1yqt_A          465 IDYVSDRLMVFEGEPGKYGRALPPMGM  491 (538)
T ss_dssp             HHHHCSEEEEEEEETTTEEEECCCEEH
T ss_pred             HHHhCCEEEEEeCCcceEeecCCHHHH
Confidence            9999999999986  788889998765

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=100.00  E-value=1.3e-69  Score=600.29  Aligned_cols=411  Identities=23%  Similarity=0.286  Sum_probs=311.7

Q ss_pred             CCcchHHHHHhccccCCCcc------------CCCCCcc-----cccccceeEEcCCCCCCC---CCCHHHHHHHHHHhc
Q psy7366           1 MGLTTTPKRVVTLLLTTQKV------------PGSNPTI-----DKNLSYIGYCPQFDALND---RLTPREHLEFYSRVR   60 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~~------------~~~~~~~-----~~~~~~ig~v~Q~~~l~~---~~tv~e~l~~~~~~~   60 (566)
                      .||||++|+++|++.|+...            .+.....     ......+++++|+..+++   ..||.|++...    
T Consensus       128 sGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~----  203 (607)
T 3bk7_A          128 TGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV----  203 (607)
T ss_dssp             SSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHT----
T ss_pred             ChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhh----
Confidence            59999999999999876421            1111100     011235889999854432   23899988531    


Q ss_pred             CCChhhHHHHHHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCC
Q psy7366          61 NVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEG  140 (566)
Q Consensus        61 ~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g  140 (566)
                           +..+++.++++.+||+...++++.+|||||||||+||+||+.+|+||||||||++||+.++.++.++|++++++|
T Consensus       204 -----~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g  278 (607)
T 3bk7_A          204 -----DEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEG  278 (607)
T ss_dssp             -----CCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTT
T ss_pred             -----HHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcC
Confidence                 112457789999999999999999999999999999999999999999999999999999999999999998789


Q ss_pred             CEEEEecCChhHHHhhcCEEEEEeCCEEEEecChhHHHhhccCccccCCCCCCCCccchhHHHhhccCCCCccccCCCcc
Q psy7366         141 RCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKSMALPVSGNDLGRGDPVRSELSRALNDGSGSGIRNSARPE  220 (566)
Q Consensus       141 ~tviiisH~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (566)
                      .|||+||||++++..+||||++|+++... .|...        .+.         .........+....           
T Consensus       279 ~tvIivsHdl~~~~~~adri~vl~~~~~~-~g~~~--------~~~---------~~~~~i~~~~~~~~-----------  329 (607)
T 3bk7_A          279 KAVLVVEHDLAVLDYLSDVIHVVYGEPGV-YGIFS--------KPK---------GTRNGINEFLQGYL-----------  329 (607)
T ss_dssp             CEEEEECSCHHHHHHHCSEEEEEESCTTT-EEEEC--------CCE---------EHHHHHHHHHHTEE-----------
T ss_pred             CEEEEEecChHHHHhhCCEEEEECCCccc-cceec--------cch---------hHHHHHHHHHhhcc-----------
Confidence            99999999999999999999999864211 01000        000         00000000000000           


Q ss_pred             cccccccccCCccchhhhhhhHHHHHHHHHHHHhhhhheeeccCCeeeeeeccchhhchHHHHHHHHHHHHHHHHHHHHH
Q psy7366         221 VSGFYNENIDGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNGTRLVAVNIWAWRIIGKNLTCMACHGALYSAINLSI  300 (566)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (566)
                                                               .....                                  
T Consensus       330 -----------------------------------------~~~~~----------------------------------  334 (607)
T 3bk7_A          330 -----------------------------------------KDENV----------------------------------  334 (607)
T ss_dssp             -----------------------------------------TTTTE----------------------------------
T ss_pred             -----------------------------------------hhhhh----------------------------------
Confidence                                                     00000                                  


Q ss_pred             HHHHHhhhhcccccCCCCCCCcchhHHHHHHhhhcCCCCCCeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcC
Q psy7366         301 EYKVFSRCFTRSNLHPVPVSLEEDDVRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGL  380 (566)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~  380 (566)
                                ..............         ........+++++|+++.|+    + ..|+++||+|++||++||+||
T Consensus       335 ----------~~~~~~~~~~~~~~---------~~~~~~~~~l~~~~l~~~~~----~-~~l~~~~~~v~~Gei~~i~G~  390 (607)
T 3bk7_A          335 ----------RFRPYEIRFTKLSE---------RVDVERETLVEYPRLVKDYG----S-FKLEVEPGEIRKGEVIGIVGP  390 (607)
T ss_dssp             ----------ECCSSCCCCCCSTT---------SCCCCCCEEEEECCEEEECS----S-CEEEECCEEEETTCEEEEECC
T ss_pred             ----------hccccccccccCCC---------cccccCceEEEEeceEEEec----c-eEEEecccccCCCCEEEEECC
Confidence                      00000000000000         00001234799999999996    3 479999999999999999999


Q ss_pred             CCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHH
Q psy7366         381 NGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNE  460 (566)
Q Consensus       381 NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~  460 (566)
                      ||||||||+|+|+|+++|++|+|.+.            .+++|+||++.+++.+||.|++.......    ....+.+.+
T Consensus       391 NGsGKSTLlk~l~Gl~~p~~G~I~~~------------~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~----~~~~~~~~~  454 (607)
T 3bk7_A          391 NGIGKTTFVKMLAGVEEPTEGKVEWD------------LTVAYKPQYIKAEYEGTVYELLSKIDSSK----LNSNFYKTE  454 (607)
T ss_dssp             TTSSHHHHHHHHHTSSCCSBSCCCCC------------CCEEEECSSCCCCCSSBHHHHHHHHHHHH----HHCHHHHHH
T ss_pred             CCCCHHHHHHHHhcCCCCCceEEEEe------------eEEEEEecCccCCCCCcHHHHHHhhhccC----CCHHHHHHH
Confidence            99999999999999999999999761            36999999988778899999886541100    011345788


Q ss_pred             HHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEccCHHH
Q psy7366         461 SLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS-EGRCVILTSHNMEE  539 (566)
Q Consensus       461 ~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~tvl~vsHd~~~  539 (566)
                      +++.+++.+..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|+++++ .|.|||+||||+++
T Consensus       455 ~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~  534 (607)
T 3bk7_A          455 LLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLM  534 (607)
T ss_dssp             THHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred             HHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence            99999999889999999999999999999999999999999999999999999999999999864 59999999999999


Q ss_pred             HHhhCCEEEEEEC--CEEEEecCcccc
Q psy7366         540 CEALCTKLTIMVN--GQFTCLGSATHL  564 (566)
Q Consensus       540 ~~~~~drv~~l~~--G~i~~~g~~~~l  564 (566)
                      +..+|||+++|++  |++...|+++++
T Consensus       535 ~~~~adrv~vl~~~~g~~~~~g~p~~~  561 (607)
T 3bk7_A          535 IDYVSDRLIVFEGEPGRHGRALPPMGM  561 (607)
T ss_dssp             HHHHCSEEEEEEEETTTEEEECCCEEH
T ss_pred             HHHhCCEEEEEcCCcceEEecCCHHHH
Confidence            9999999999986  888889998875

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=100.00  E-value=2.4e-68  Score=583.02  Aligned_cols=414  Identities=20%  Similarity=0.214  Sum_probs=302.7

Q ss_pred             CCcchHHHHHhccccCCCc-c-------------CCCCCcc-----cccccceeEEcCCCCCC---CCCCHHHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQK-V-------------PGSNPTI-----DKNLSYIGYCPQFDALN---DRLTPREHLEFYSR   58 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~-~-------------~~~~~~~-----~~~~~~ig~v~Q~~~l~---~~~tv~e~l~~~~~   58 (566)
                      +||||++|+++|++.|+.. +             .+.....     ......+...+|.....   ...++.+++...  
T Consensus        36 aGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~--  113 (538)
T 3ozx_A           36 VGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKI--  113 (538)
T ss_dssp             SSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHH--
T ss_pred             CcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhhccCcHHHHhhcc--
Confidence            5999999999999987652 1             1111000     01112344555554322   224777765321  


Q ss_pred             hcCCChhhHHHHHHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHh
Q psy7366          59 VRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS  138 (566)
Q Consensus        59 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~  138 (566)
                             ...++++++++.+|+....++++.+|||||||||+||+||+.+|+|||||||||+||+.++.++.++|+++++
T Consensus       114 -------~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~  186 (538)
T 3ozx_A          114 -------DERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK  186 (538)
T ss_dssp             -------CCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCT
T ss_pred             -------hhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhC
Confidence                   1123567899999999999999999999999999999999999999999999999999999999999999965


Q ss_pred             CCCEEEEecCChhHHHhhcCEEEEEeCCEEEEecChhHHHhhccCccccCCCCCCCCccchhHHHhhccCCCCccccCCC
Q psy7366         139 EGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKSMALPVSGNDLGRGDPVRSELSRALNDGSGSGIRNSAR  218 (566)
Q Consensus       139 ~g~tviiisH~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (566)
                       |+|||+||||++++..+||+|++|++|...+ |...        .+.         .........+.......      
T Consensus       187 -g~tii~vsHdl~~~~~~~d~i~vl~~~~~~~-g~~~--------~~~---------~~~~~~~~~~~g~~~~~------  241 (538)
T 3ozx_A          187 -NKYVIVVDHDLIVLDYLTDLIHIIYGESSVY-GRVS--------KSY---------AARVGINNFLKGYLPAE------  241 (538)
T ss_dssp             -TSEEEEECSCHHHHHHHCSEEEEEEEETTTE-EEEC--------CCE---------EHHHHHHHHHHTEETTT------
T ss_pred             -CCEEEEEEeChHHHHhhCCEEEEecCCcccc-cccc--------hhh---------hHHHHHHHHHhhhchhh------
Confidence             9999999999999999999999998754221 0000        000         00000000000000000      


Q ss_pred             cccccccccccCCccchhhhhhhHHHHHHHHHHHHhhhhheeeccCCeeeeeeccchhhchHHHHHHHHHHHHHHHHHHH
Q psy7366         219 PEVSGFYNENIDGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNGTRLVAVNIWAWRIIGKNLTCMACHGALYSAINL  298 (566)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (566)
                                                                    ...                               
T Consensus       242 ----------------------------------------------~~~-------------------------------  244 (538)
T 3ozx_A          242 ----------------------------------------------NMK-------------------------------  244 (538)
T ss_dssp             ----------------------------------------------TEE-------------------------------
T ss_pred             ----------------------------------------------hhh-------------------------------
Confidence                                                          000                               


Q ss_pred             HHHHHHHhhhhcccccCCCCCCCcchhHHHHHHhhhcCCCCCCeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEE
Q psy7366         299 SIEYKVFSRCFTRSNLHPVPVSLEEDDVRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLL  378 (566)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~  378 (566)
                                   .+............    ....  .......++++++++.|+    + ..|+++||+|++||++||+
T Consensus       245 -------------~r~~~~~~~~~~~~----~~~~--~~~~~~~l~~~~l~~~~~----~-~~l~~~~~~i~~Gei~~i~  300 (538)
T 3ozx_A          245 -------------IRPDEIKFMLKEVS----DLDL--SKDLKTKMKWTKIIKKLG----D-FQLVVDNGEAKEGEIIGIL  300 (538)
T ss_dssp             -------------CSSSCCCCSCC----------------CCEEEEECCEEEEET----T-EEEEECCEEEETTCEEEEE
T ss_pred             -------------ccchhhhccccccc----cccc--cccccceEEEcceEEEEC----C-EEEEeccceECCCCEEEEE
Confidence                         00000000000000    0000  001234689999999996    2 4688899999999999999


Q ss_pred             cCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHH
Q psy7366         379 GLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIV  458 (566)
Q Consensus       379 G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~  458 (566)
                      ||||||||||+|+|+|+++|++|+|.+++.           .++|+||+......+||.+|+.+..... ...  ....+
T Consensus       301 G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~i~~~~q~~~~~~~~tv~~~l~~~~~~~-~~~--~~~~~  366 (538)
T 3ozx_A          301 GPNGIGKTTFARILVGEITADEGSVTPEKQ-----------ILSYKPQRIFPNYDGTVQQYLENASKDA-LST--SSWFF  366 (538)
T ss_dssp             CCTTSSHHHHHHHHTTSSCCSBCCEESSCC-----------CEEEECSSCCCCCSSBHHHHHHHHCSST-TCT--TSHHH
T ss_pred             CCCCCCHHHHHHHHhCCCCCCCcEEEECCe-----------eeEeechhcccccCCCHHHHHHHhhhhc-cch--hHHHH
Confidence            999999999999999999999999987653           5899999977666789999987642111 111  12346


Q ss_pred             HHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEccCH
Q psy7366         459 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS-EGRCVILTSHNM  537 (566)
Q Consensus       459 ~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~tvl~vsHd~  537 (566)
                      .++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|+++++ .|.|||+||||+
T Consensus       367 ~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl  446 (538)
T 3ozx_A          367 EEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDL  446 (538)
T ss_dssp             HHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             HHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            7889999999899999999999999999999999999999999999999999999999999999975 599999999999


Q ss_pred             HHHHhhCCEEEEEEC--CEEEEecCccc
Q psy7366         538 EECEALCTKLTIMVN--GQFTCLGSATH  563 (566)
Q Consensus       538 ~~~~~~~drv~~l~~--G~i~~~g~~~~  563 (566)
                      +++..+||||++|++  |.....+++.+
T Consensus       447 ~~~~~~aDri~vl~~~~~~~~~~~~~~~  474 (538)
T 3ozx_A          447 SIHDYIADRIIVFKGEPEKAGLATSPVT  474 (538)
T ss_dssp             HHHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred             HHHHHhCCEEEEEeCCcceeccCCChHH
Confidence            999999999999986  55666666543

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=100.00  E-value=1.5e-67  Score=602.01  Aligned_cols=400  Identities=24%  Similarity=0.295  Sum_probs=302.9

Q ss_pred             CCcchHHHHHhccccCCCccCCCCCcccccccceeEEcCCC-CCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHHHcC
Q psy7366           1 MGLTTTPKRVVTLLLTTQKVPGSNPTIDKNLSYIGYCPQFD-ALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFA   79 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~-~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g   79 (566)
                      .||||++|++++    |+ +.+....   ...+++|++|++ .+++.+||.||+.+  ...+.     .+++.++++.+|
T Consensus       472 sGKSTLLk~Lag----G~-i~g~~~~---~~~~~~~v~q~~~~~~~~ltv~e~l~~--~~~~~-----~~~v~~~L~~lg  536 (986)
T 2iw3_A          472 CGKSTLMRAIAN----GQ-VDGFPTQ---EECRTVYVEHDIDGTHSDTSVLDFVFE--SGVGT-----KEAIKDKLIEFG  536 (986)
T ss_dssp             SSHHHHHHHHHH----TC-STTCCCT---TTSCEEETTCCCCCCCTTSBHHHHHHT--TCSSC-----HHHHHHHHHHTT
T ss_pred             CCHHHHHHHHhC----CC-cCCCccc---cceeEEEEcccccccccCCcHHHHHHH--hhcCH-----HHHHHHHHHHcC
Confidence            599999999995    22 1221111   112478999986 67788999999975  22221     577899999999


Q ss_pred             CC-cccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHHhhcC
Q psy7366          80 LG-HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCT  158 (566)
Q Consensus        80 l~-~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~~~d  158 (566)
                      +. ...++++.+||||||||++||+||+.+|++|||||||++||+.++++|.++|++   .|+|||+||||++++.++||
T Consensus       537 L~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl~~l~~~ad  613 (986)
T 2iw3_A          537 FTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDSVFLDNVCE  613 (986)
T ss_dssp             CCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCHHHHHHHCS
T ss_pred             CChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCHHHHHHhCC
Confidence            95 678999999999999999999999999999999999999999999999999987   58999999999999999999


Q ss_pred             EEEEEeCCEEE-EecChhHHHhhccCccccCCCCCCCCccchhHHHhhccCCCCccccCCCcccccccccccCCccchhh
Q psy7366         159 KLTIMVNGQFT-CLGSATHLKSKSMALPVSGNDLGRGDPVRSELSRALNDGSGSGIRNSARPEVSGFYNENIDGKNLTCM  237 (566)
Q Consensus       159 ~i~vl~~G~i~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (566)
                      ||++|++|+++ +.|+++++.........   .+.            +.   .   .     ...               
T Consensus       614 rii~L~~G~iv~~~G~~~e~~~~~~~~~~---~~~------------l~---~---~-----~~~---------------  652 (986)
T 2iw3_A          614 YIINYEGLKLRKYKGNFTEFVKKCPAAKA---YEE------------LS---N---T-----DLE---------------  652 (986)
T ss_dssp             EEEEEETTEEEEEESCHHHHHHHCGGGGG---SSS------------TT---T---C-----CCC---------------
T ss_pred             EEEEEECCeeecCCCCHHHHHhhhHHHHH---HHh------------hh---h---h-----hhh---------------
Confidence            99999999997 68998887532110000   000            00   0   0     000               


Q ss_pred             hhhhHHHHHHHHHHHHhhhhheeeccCCeeeeeeccchhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCC
Q psy7366         238 ACHGALYSAINLSIEYKVFSRCFTRSNGTRLVAVNIWAWRIIGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNLHPV  317 (566)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (566)
                                                                                                .   ..
T Consensus       653 --------------------------------------------------------------------------~---~~  655 (986)
T 2iw3_A          653 --------------------------------------------------------------------------F---KF  655 (986)
T ss_dssp             --------------------------------------------------------------------------C---CC
T ss_pred             --------------------------------------------------------------------------c---cc
Confidence                                                                                      0   00


Q ss_pred             CCCCcchhHHHHHHhhhcCCCCCCeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCC
Q psy7366         318 PVSLEEDDVRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK  397 (566)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~  397 (566)
                      +.......       .  ......+|+++|+++.|+.  +.+++|+|+||+|++|+++||+||||||||||+|+|+|+++
T Consensus       656 p~~~~~~~-------~--~~~~~~mL~v~nLs~~Y~g--~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~  724 (986)
T 2iw3_A          656 PEPGYLEG-------V--KTKQKAIVKVTNMEFQYPG--TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL  724 (986)
T ss_dssp             CCCCCCTT-------C--CSTTSEEEEEEEEEECCTT--CSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSC
T ss_pred             cccccccc-------c--ccCCCceEEEEeeEEEeCC--CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            00000000       0  0011237999999999962  12579999999999999999999999999999999999999


Q ss_pred             CCccEEEEcCccCCCchHHhcCceEEEecCCC----CCCCCCHHHHHHHHHHh---------------------------
Q psy7366         398 PTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDA----LNDRLTPREHLEFYSRV---------------------------  446 (566)
Q Consensus       398 ~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~----l~~~~tv~e~l~~~~~~---------------------------  446 (566)
                      |++|+|+++|..          +++|++|++.    .....|+.+++.+....                           
T Consensus       725 P~sG~I~~~~~~----------~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~  794 (986)
T 2iw3_A          725 PTSGEVYTHENC----------RIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFK  794 (986)
T ss_dssp             CSEEEEEECTTC----------CEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEE
T ss_pred             CCceEEEEcCcc----------ceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccc
Confidence            999999998631          4777777641    11234666655432100                           


Q ss_pred             --------------------------------------------------------------------------cCCCch
Q psy7366         447 --------------------------------------------------------------------------RNVPSV  452 (566)
Q Consensus       447 --------------------------------------------------------------------------~~~~~~  452 (566)
                                                                                                .+....
T Consensus       795 ~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~  874 (986)
T 2iw3_A          795 IEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRP  874 (986)
T ss_dssp             ETTEEEEEEEEEEEEEETTEEEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred             cccchhhhhhhhhhhhhcccchhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccch
Confidence                                                                                      000000


Q ss_pred             HHHHHHHHHHHHcCCCC-c-cccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEE
Q psy7366         453 LLNTIVNESLNKFALGH-Y-SDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCV  530 (566)
Q Consensus       453 ~~~~~~~~~l~~~~l~~-~-~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tv  530 (566)
                      ...+.+.++++.+||.. . .++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++   +.||
T Consensus       875 ~~~~~i~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tV  951 (986)
T 2iw3_A          875 LTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGV  951 (986)
T ss_dssp             CCHHHHHHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEE
T ss_pred             hHHHHHHHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEE
Confidence            11345788999999975 3 58899999999999999999999999999999999999999999998888765   6799


Q ss_pred             EEEccCHHHHHhhCCEEEEEECCEEEEecC
Q psy7366         531 ILTSHNMEECEALCTKLTIMVNGQFTCLGS  560 (566)
Q Consensus       531 l~vsHd~~~~~~~~drv~~l~~G~i~~~g~  560 (566)
                      |+||||++++..+|||+++|++|+++..|+
T Consensus       952 IiISHD~e~v~~l~DrVivL~~G~Iv~~G~  981 (986)
T 2iw3_A          952 IIITHSAEFTKNLTEEVWAVKDGRMTPSGH  981 (986)
T ss_dssp             EEECSCHHHHTTTCCEEECCBTTBCCC---
T ss_pred             EEEECCHHHHHHhCCEEEEEECCEEEEeCC
Confidence            999999999999999999999999988775

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=100.00  E-value=2.6e-67  Score=627.86  Aligned_cols=216  Identities=22%  Similarity=0.412  Sum_probs=181.5

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCc
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSY  420 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~  420 (566)
                      .++++|+++.|+... +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|++
T Consensus      1030 ~i~~~~v~~~y~~~~-~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 1108 (1284)
T 3g5u_A         1030 NVQFSGVVFNYPTRP-SIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQ 1108 (1284)
T ss_dssp             CEEEEEEEBCCSCGG-GCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTS
T ss_pred             cEEEEEEEEECCCCC-CCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhc
Confidence            599999999997321 2469999999999999999999999999999999999999999999999999976 45667889


Q ss_pred             eEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCC-----------ccccCcCcCChhHHHHHHHH
Q psy7366         421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGH-----------YSDREVRTLSGGNKRKLSTA  489 (566)
Q Consensus       421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGqkqrv~la  489 (566)
                      ++||||++.+|+ .||+||+.++........    +.+.+.++..++.+           .......+|||||||||+||
T Consensus      1109 i~~v~Q~~~l~~-~ti~eNi~~~~~~~~~~~----~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iA 1183 (1284)
T 3g5u_A         1109 LGIVSQEPILFD-CSIAENIAYGDNSRVVSY----EEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIA 1183 (1284)
T ss_dssp             CEEEESSCCCCS-SBHHHHHTCCCSSCCCCH----HHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHH
T ss_pred             eEEECCCCcccc-ccHHHHHhccCCCCCCCH----HHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHH
Confidence            999999998875 599999976432111222    22334444444322           22334568999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         490 IALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       490 ~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      |||+.+|+||||||||+|||+.+.+.+++.|+++ .+|+|||+||||++++.. ||||++|++|++++.|+++++.
T Consensus      1184 Ral~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~i~~-~dri~vl~~G~i~~~g~~~~l~ 1257 (1284)
T 3g5u_A         1184 RALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRLSTIQN-ADLIVVIQNGKVKEHGTHQQLL 1257 (1284)
T ss_dssp             HHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTGGGS-CSEEEEEETBEEEEEECHHHHH
T ss_pred             HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-CCCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHH
Confidence            9999999999999999999999999999999875 458999999999999865 9999999999999999998763

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=100.00  E-value=2.4e-66  Score=621.06  Aligned_cols=216  Identities=25%  Similarity=0.371  Sum_probs=186.3

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCc
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSY  420 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~  420 (566)
                      .|+++|++++|+.+ .+.++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++.. ....+|++
T Consensus      1076 ~I~f~nVsf~Y~~~-~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~ 1154 (1321)
T 4f4c_A         1076 KVIFKNVRFAYPER-PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQ 1154 (1321)
T ss_dssp             CEEEEEEEECCTTS-CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTT
T ss_pred             eEEEEEEEEeCCCC-CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhh
Confidence            59999999999742 24579999999999999999999999999999999999999999999999999987 56788999


Q ss_pred             eEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCC-------ccccC----cCcCChhHHHHHHHH
Q psy7366         421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGH-------YSDRE----VRTLSGGNKRKLSTA  489 (566)
Q Consensus       421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~----~~~LSgGqkqrv~la  489 (566)
                      |+||||+|.+|+. |++|||.++...    ....++.+.++++..++.+       -.+..    ..+||||||||++||
T Consensus      1155 i~~V~Qdp~LF~g-TIreNI~~gld~----~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiA 1229 (1321)
T 4f4c_A         1155 IAIVSQEPTLFDC-SIAENIIYGLDP----SSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIA 1229 (1321)
T ss_dssp             EEEECSSCCCCSE-EHHHHHSSSSCT----TTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHH
T ss_pred             eEEECCCCEeeCc-cHHHHHhccCCC----CCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHH
Confidence            9999999999987 999999764311    1112344666677666532       23443    457999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         490 IALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       490 ~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      |||+++|+|||||||||+||+++.+.|++.|+++. +|+|+|+|+|.++.+.. ||||+||++|+|++.|++++|.
T Consensus      1230 RAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsTi~~-aD~I~Vld~G~IvE~Gth~eLl 1303 (1321)
T 4f4c_A         1230 RALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNTVMN-ADCIAVVSNGTIIEKGTHTQLM 1303 (1321)
T ss_dssp             HHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSSTTTT-CSEEEEESSSSEEEEECHHHHH
T ss_pred             HHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHHHHHh-CCEEEEEECCEEEEECCHHHHH
Confidence            99999999999999999999999999999998753 48999999999999876 9999999999999999999874

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-65  Score=566.47  Aligned_cols=352  Identities=20%  Similarity=0.260  Sum_probs=270.3

Q ss_pred             HHHHHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEec
Q psy7366          68 NTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTS  147 (566)
Q Consensus        68 ~~~~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiis  147 (566)
                      .++++++++.+||+..+++++.+|||||||||+||+||+.+|++|||||||++||+.++.++.++|++++++|+|||+||
T Consensus       199 ~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vt  278 (608)
T 3j16_B          199 PEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVE  278 (608)
T ss_dssp             HHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEEC
T ss_pred             HHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence            46788999999999999999999999999999999999999999999999999999999999999999988899999999


Q ss_pred             CChhHHHhhcCEEEEEeCCEEEEecChhHHHhhccCccccCCCCCCCCccchhHHHhhccCCCCccccCCCccccccccc
Q psy7366         148 HNMEECEALCTKLTIMVNGQFTCLGSATHLKSKSMALPVSGNDLGRGDPVRSELSRALNDGSGSGIRNSARPEVSGFYNE  227 (566)
Q Consensus       148 H~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (566)
                      ||++++..+||||++|++|..++....         .+          ....+....+...                   
T Consensus       279 Hdl~~~~~~~drv~vl~~~~~~~~~~~---------~~----------~~~~~~~~~~~~~-------------------  320 (608)
T 3j16_B          279 HDLSVLDYLSDFVCIIYGVPSVYGVVT---------LP----------ASVREGINIFLDG-------------------  320 (608)
T ss_dssp             SCHHHHHHHCSEEEEEESCTTTEEEEC---------CC----------EEHHHHHHHHHHT-------------------
T ss_pred             CCHHHHHHhCCEEEEEeCCccccceec---------Cc----------hhHHHHHHHhhcc-------------------
Confidence            999999999999999987653211000         00          0000000000000                   


Q ss_pred             ccCCccchhhhhhhHHHHHHHHHHHHhhhhheeeccCCeeeeeeccchhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy7366         228 NIDGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNGTRLVAVNIWAWRIIGKNLTCMACHGALYSAINLSIEYKVFSR  307 (566)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (566)
                                                     .. .....                                         
T Consensus       321 -------------------------------~~-~~~~~-----------------------------------------  327 (608)
T 3j16_B          321 -------------------------------HI-PAENL-----------------------------------------  327 (608)
T ss_dssp             -------------------------------EE-TTTTE-----------------------------------------
T ss_pred             -------------------------------cc-chhhh-----------------------------------------
Confidence                                           00 00000                                         


Q ss_pred             hhcccccCCCCCCCcchhHHHHHHhhhcCCCCCCeEEEeeeEEEeCCcCCCcceeeeeeEEEeCC-----cEEEEEcCCC
Q psy7366         308 CFTRSNLHPVPVSLEEDDVRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRG-----ECFGLLGLNG  382 (566)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~G-----e~~~l~G~NG  382 (566)
                         ..............             .....+...++++.|+.   ...+++++||++.+|     |++||+||||
T Consensus       328 ---~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~y~~---~~~~l~~vsl~v~~G~~~~GEiv~iiG~NG  388 (608)
T 3j16_B          328 ---RFRTEALQFRIADA-------------TEDLQNDSASRAFSYPS---LKKTQGDFVLNVEEGEFSDSEILVMMGENG  388 (608)
T ss_dssp             ---ECSSSCCCCCCSSS-------------SCCCCCCSSSSCCEECC---EEEECSSCEEEECCEECCTTCEEEEESCTT
T ss_pred             ---cccccccccccccc-------------ccceeeeccceeEEecC---cccccCceEEEEecCccccceEEEEECCCC
Confidence               00000000000000             00001111455666752   245789999999998     7899999999


Q ss_pred             CcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHH
Q psy7366         383 AGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL  462 (566)
Q Consensus       383 sGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l  462 (566)
                      ||||||+|+|+|+++|++|+.      +.      +..++|+||+.......|+.+++...  .....  .....+.+++
T Consensus       389 sGKSTLlk~l~Gl~~p~~G~~------~~------~~~i~~~~q~~~~~~~~tv~e~~~~~--~~~~~--~~~~~~~~~l  452 (608)
T 3j16_B          389 TGKTTLIKLLAGALKPDEGQD------IP------KLNVSMKPQKIAPKFPGTVRQLFFKK--IRGQF--LNPQFQTDVV  452 (608)
T ss_dssp             SSHHHHHHHHHTSSCCSBCCC------CC------SCCEEEECSSCCCCCCSBHHHHHHHH--CSSTT--TSHHHHHHTH
T ss_pred             CcHHHHHHHHhcCCCCCCCcC------cc------CCcEEEecccccccCCccHHHHHHHH--hhccc--ccHHHHHHHH
Confidence            999999999999999999962      11      23699999997766667999987532  11111  1124567899


Q ss_pred             HHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEccCHHHHH
Q psy7366         463 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS-EGRCVILTSHNMEECE  541 (566)
Q Consensus       463 ~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~tvl~vsHd~~~~~  541 (566)
                      +.+++.+..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|+++.+ .|.|||+||||++++.
T Consensus       453 ~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~  532 (608)
T 3j16_B          453 KPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMAT  532 (608)
T ss_dssp             HHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHH
T ss_pred             HHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999864 5999999999999999


Q ss_pred             hhCCEEEEEEC--CEEEEecCccccc
Q psy7366         542 ALCTKLTIMVN--GQFTCLGSATHLK  565 (566)
Q Consensus       542 ~~~drv~~l~~--G~i~~~g~~~~l~  565 (566)
                      .+|||+++|++  |+++..|+|+++.
T Consensus       533 ~~aDrvivl~~~~g~~~~~g~p~~~~  558 (608)
T 3j16_B          533 YLADKVIVFEGIPSKNAHARAPESLL  558 (608)
T ss_dssp             HHCSEEEECEEETTTEEECCCCEEHH
T ss_pred             HhCCEEEEEeCCCCeEEecCChHHHh
Confidence            99999999986  8999999998763

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=100.00  E-value=4.5e-64  Score=566.80  Aligned_cols=381  Identities=20%  Similarity=0.275  Sum_probs=267.8

Q ss_pred             cceeEEcCCCCC-------------------CCCCCHHHHHHHHHHhc--CCChh-------hHHHHHHHHHHHcCCCcc
Q psy7366          32 SYIGYCPQFDAL-------------------NDRLTPREHLEFYSRVR--NVPSV-------LLNTIVNESLNKFALGHY   83 (566)
Q Consensus        32 ~~ig~v~Q~~~l-------------------~~~~tv~e~l~~~~~~~--~~~~~-------~~~~~~~~~l~~~gl~~~   83 (566)
                      ..+|+++|.+.+                   ++.+||.||+.+.....  .....       ++.++ .++++.+||++.
T Consensus       116 ~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~gL~~~  194 (670)
T 3ux8_A          116 STVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDR-LGFLQNVGLDYL  194 (670)
T ss_dssp             CBHHHHTTCC-------------------------CC--------------------------CHHH-HHHHHHTTCTTC
T ss_pred             hceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHH-HHHHHHcCCchh
Confidence            457777776543                   34679999998753221  11000       11112 246889999864


Q ss_pred             -cccccccCChhHHHHHHHHHHHhCCCC--EEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHHhhcCEE
Q psy7366          84 -SDREVRTLSGGNKRKLSTAIALLGNPP--LIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKL  160 (566)
Q Consensus        84 -~~~~~~~LSgG~kqrl~iA~al~~~p~--vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~~~d~i  160 (566)
                       +++++.+|||||||||+||+||+.+|+  +|||||||+||||.++.++.++|++++++|.|||+||||++++. .||||
T Consensus       195 ~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~-~~d~i  273 (670)
T 3ux8_A          195 TLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML-AADYL  273 (670)
T ss_dssp             CTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHH-HCSEE
T ss_pred             hhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHh-hCCEE
Confidence             799999999999999999999999998  99999999999999999999999999888999999999999876 59999


Q ss_pred             EEE------eCCEEEEecChhHHHhhccCccccCCCCCCCCccchhHHHhhccCCCCccccCCCcccccccccccCCccc
Q psy7366         161 TIM------VNGQFTCLGSATHLKSKSMALPVSGNDLGRGDPVRSELSRALNDGSGSGIRNSARPEVSGFYNENIDGKNL  234 (566)
Q Consensus       161 ~vl------~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (566)
                      ++|      ++|++++.|+++++.......                ....+...                          
T Consensus       274 i~l~~g~~~~~G~i~~~g~~~~~~~~~~~~----------------~~~~~~~~--------------------------  311 (670)
T 3ux8_A          274 IDIGPGAGIHGGEVVAAGTPEEVMNDPNSL----------------TGQYLSGK--------------------------  311 (670)
T ss_dssp             EEECSSSGGGCCSEEEEECHHHHHTCTTCH----------------HHHHHTTS--------------------------
T ss_pred             EEecccccccCCEEEEecCHHHHhcCchhH----------------HHHHhccc--------------------------
Confidence            999      899999999998875321000                00000000                          


Q ss_pred             hhhhhhhHHHHHHHHHHHHhhhhheeeccCCeeeeeeccchhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q psy7366         235 TCMACHGALYSAINLSIEYKVFSRCFTRSNGTRLVAVNIWAWRIIGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNL  314 (566)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (566)
                                                                                                    . 
T Consensus       312 ------------------------------------------------------------------------------~-  312 (670)
T 3ux8_A          312 ------------------------------------------------------------------------------K-  312 (670)
T ss_dssp             ------------------------------------------------------------------------------S-
T ss_pred             ------------------------------------------------------------------------------c-
Confidence                                                                                          0 


Q ss_pred             CCCCCCCcchhHHHHHHhhhcCCCCCCeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHH-
Q psy7366         315 HPVPVSLEEDDVRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT-  393 (566)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~-  393 (566)
                       ........            .......+.+.+.         ...+|+||||+|++||+++|+||||||||||+++|. 
T Consensus       313 -~~~~~~~~------------~~~~~~~~~~~~~---------~~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~  370 (670)
T 3ux8_A          313 -FIPIPAER------------RRPDGRWLEVVGA---------REHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLY  370 (670)
T ss_dssp             -CCCCCSSC------------CCCCSCEEEEEEE---------CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHH
T ss_pred             -cccccccc------------ccccccceeecCc---------cccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHH
Confidence             00000000            0001123444332         245899999999999999999999999999998754 


Q ss_pred             ---------------------CCCCCCccEEEEcCccCCCchH----H--------------------------------
Q psy7366         394 ---------------------GAIKPTSGNAYVMNHSIRDSMD----L--------------------------------  416 (566)
Q Consensus       394 ---------------------G~~~~~~G~i~~~g~~~~~~~~----~--------------------------------  416 (566)
                                           |+..+ +|.|.+++.++.....    .                                
T Consensus       371 ~~~~~~~~~~~~~~g~~~~i~gl~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (670)
T 3ux8_A          371 KALAQKLHRAKAKPGEHRDIRGLEHL-DKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNV  449 (670)
T ss_dssp             HHHHHHHHCCCSCCCSCSEEECGGGC-SEEEECCSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTS
T ss_pred             HHHHHHhhhccccccccccccccccc-CceeEeccccCCCCCCcchhhhhhhhHHHHHHhcccchhhhcccccccccccC
Confidence                                 44443 4688888877642110    0                                


Q ss_pred             ------hcCceEEEecCCCCCC--------------------------------CCCHHHHHHHHHHhcCCCchHHHHHH
Q psy7366         417 ------VRSYIGYCPQFDALND--------------------------------RLTPREHLEFYSRVRNVPSVLLNTIV  458 (566)
Q Consensus       417 ------~~~~i~~v~q~~~l~~--------------------------------~~tv~e~l~~~~~~~~~~~~~~~~~~  458 (566)
                            .....|+++|+..+++                                .+|+.||+.+....      ....+.
T Consensus       450 ~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ltv~e~l~~~~~~------~~~~~~  523 (670)
T 3ux8_A          450 KGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASI------PKIKRK  523 (670)
T ss_dssp             TTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCCBTTBCHHHHHTSBHHHHHHHTTTC------HHHHHH
T ss_pred             CCCccccccccceEeeecccccccccccccccCcccChhhhheeecCCCHHHHhhCCHHHHHHHHHHh------hhHHHH
Confidence                  0011244444332222                                47899998775321      112345


Q ss_pred             HHHHHHcCCCC-ccccCcCcCChhHHHHHHHHHHHcCCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEc
Q psy7366         459 NESLNKFALGH-YSDREVRTLSGGNKRKLSTAIALLGNP---PLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTS  534 (566)
Q Consensus       459 ~~~l~~~~l~~-~~~~~~~~LSgGqkqrv~la~al~~~p---~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vs  534 (566)
                      .+.+..+++.. ..++++.+|||||||||+|||||+.+|   ++|||||||+|||+.++..++++|++++++|.|||+||
T Consensus       524 ~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vt  603 (670)
T 3ux8_A          524 LETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE  603 (670)
T ss_dssp             HHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred             HHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence            67888899964 568999999999999999999999887   49999999999999999999999999988899999999


Q ss_pred             cCHHHHHhhCCEEEEE------ECCEEEEecCccccc
Q psy7366         535 HNMEECEALCTKLTIM------VNGQFTCLGSATHLK  565 (566)
Q Consensus       535 Hd~~~~~~~~drv~~l------~~G~i~~~g~~~~l~  565 (566)
                      ||++++. .||||++|      ++|+|+++|+++++.
T Consensus       604 Hd~~~~~-~~d~i~~l~~~~g~~~G~i~~~g~~~~~~  639 (670)
T 3ux8_A          604 HNLDVIK-TADYIIDLGPEGGDRGGQIVAVGTPEEVA  639 (670)
T ss_dssp             CCHHHHT-TCSEEEEEESSSGGGCCEEEEEECHHHHH
T ss_pred             CCHHHHH-hCCEEEEecCCcCCCCCEEEEecCHHHHH
Confidence            9999874 69999999      899999999998764

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=100.00  E-value=2.1e-58  Score=522.59  Aligned_cols=368  Identities=21%  Similarity=0.312  Sum_probs=281.4

Q ss_pred             CCCCHHHHHHHHHHhcCCCh----------hhHHHHHHHHHHHcCCCc-ccccccccCChhHHHHHHHHHHHhCCC--CE
Q psy7366          45 DRLTPREHLEFYSRVRNVPS----------VLLNTIVNESLNKFALGH-YSDREVRTLSGGNKRKLSTAIALLGNP--PL  111 (566)
Q Consensus        45 ~~~tv~e~l~~~~~~~~~~~----------~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgG~kqrl~iA~al~~~p--~v  111 (566)
                      ..+||.|+++|+ ++.+++.          .++.+++ +.|..+||+. .+++++.+|||||+|||+||++|..+|  ++
T Consensus       450 ~~ltV~e~~~f~-e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~l  527 (972)
T 2r6f_A          450 TAMSVTEALAFF-DGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVL  527 (972)
T ss_dssp             HTSBHHHHHHHH-HHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCE
T ss_pred             hhCCHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCE
Confidence            468999999995 4555655          3456676 4689999986 489999999999999999999999985  99


Q ss_pred             EEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHHhhcCEEEEE------eCCEEEEecChhHHHhhccCcc
Q psy7366         112 IFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIM------VNGQFTCLGSATHLKSKSMALP  185 (566)
Q Consensus       112 LlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~~~d~i~vl------~~G~i~~~g~~~~~~~~~~~~~  185 (566)
                      |||||||++|||.++++|+++|++|++.|.|||+||||++++. .||||++|      ++|++++.|+++++....... 
T Consensus       528 lILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~-~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~~~~sl-  605 (972)
T 2r6f_A          528 YVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML-AADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPNSL-  605 (972)
T ss_dssp             EEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHH-SCSEEEEECSSSGGGCCSEEEEECTTTTTTCTTCT-
T ss_pred             EEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEeCCCccCCCCEEEEecCHHHHHhhhHHH-
Confidence            9999999999999999999999999888999999999999886 69999999      799999999987653210000 


Q ss_pred             ccCCCCCCCCccchhHHHhhccCCCCccccCCCcccccccccccCCccchhhhhhhHHHHHHHHHHHHhhhhheeeccCC
Q psy7366         186 VSGNDLGRGDPVRSELSRALNDGSGSGIRNSARPEVSGFYNENIDGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNG  265 (566)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (566)
                                     ....+...                                                         
T Consensus       606 ---------------t~~~l~g~---------------------------------------------------------  613 (972)
T 2r6f_A          606 ---------------TGQYLSGK---------------------------------------------------------  613 (972)
T ss_dssp             ---------------THHHHHTS---------------------------------------------------------
T ss_pred             ---------------HHHHhcCC---------------------------------------------------------
Confidence                           00000000                                                         


Q ss_pred             eeeeeeccchhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCcchhHHHHHHhhhcCCCCCCeEEE
Q psy7366         266 TRLVAVNIWAWRIIGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNLHPVPVSLEEDDVRKERERVEHGADSGDVLVV  345 (566)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  345 (566)
                                                                     .  ...... .      +     .......|++
T Consensus       614 -----------------------------------------------~--~~~~~~-~------~-----~~~~~~~L~v  632 (972)
T 2r6f_A          614 -----------------------------------------------K--FIPIPA-E------R-----RRPDGRWLEV  632 (972)
T ss_dssp             -----------------------------------------------S--CCCCCS-S------C-----CCCCSCEEEE
T ss_pred             -----------------------------------------------c--cccCcc-c------c-----ccccceEEEE
Confidence                                                           0  000000 0      0     0011246889


Q ss_pred             eeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHH-CCC-------CCCcc-------------EEE
Q psy7366         346 KRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT-GAI-------KPTSG-------------NAY  404 (566)
Q Consensus       346 ~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~-G~~-------~~~~G-------------~i~  404 (566)
                      ++++.         ..|+||||+|++|+++||+|+||||||||+++|+ |.+       .+..|             .|.
T Consensus       633 ~~l~~---------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~  703 (972)
T 2r6f_A          633 VGARE---------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVID  703 (972)
T ss_dssp             EEECS---------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEE
T ss_pred             ecCcc---------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEE
Confidence            88852         2699999999999999999999999999999864 221       12233             378


Q ss_pred             EcCccCCCc----hH-------Hh---------cCceEEEecCCCCC---------------------------------
Q psy7366         405 VMNHSIRDS----MD-------LV---------RSYIGYCPQFDALN---------------------------------  431 (566)
Q Consensus       405 ~~g~~~~~~----~~-------~~---------~~~i~~v~q~~~l~---------------------------------  431 (566)
                      +++.++...    ..       ..         .+.+||++|.+.+.                                 
T Consensus       704 idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~  783 (972)
T 2r6f_A          704 IDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCH  783 (972)
T ss_dssp             ECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTT
T ss_pred             EcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccccc
Confidence            888776321    10       00         12357777754321                                 


Q ss_pred             -------------C--------CCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCC-ccccCcCcCChhHHHHHHHH
Q psy7366         432 -------------D--------RLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGH-YSDREVRTLSGGNKRKLSTA  489 (566)
Q Consensus       432 -------------~--------~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqrv~la  489 (566)
                                   .        .+|+.|++.++..   . . . ..+..++++.++|.. ..++++.+|||||||||+||
T Consensus       784 G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~---~-~-~-~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LA  857 (972)
T 2r6f_A          784 GKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFAS---I-P-K-IKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLA  857 (972)
T ss_dssp             TCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCS---C-H-H-HHHHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHH
T ss_pred             cccccchhhhhhccCCCHHHhhhcCHHHHHHHHhc---c-h-h-HHHHHHHHHHcCCCcccccCchhhCCHHHHHHHHHH
Confidence                         1        3466677665321   1 1 1 234568899999987 78999999999999999999


Q ss_pred             HHHcCCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEE------ECCEEEEecC
Q psy7366         490 IALLGNP---PLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIM------VNGQFTCLGS  560 (566)
Q Consensus       490 ~al~~~p---~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l------~~G~i~~~g~  560 (566)
                      ++|+.+|   +||||||||+|||+.++..++++|++++++|.|||+||||++++ ..|||+++|      ++|++++.|+
T Consensus       858 raL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i-~~aDrIivL~p~gG~~~G~Iv~~g~  936 (972)
T 2r6f_A          858 AELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVI-KTADYIIDLGPEGGDRGGQIVAVGT  936 (972)
T ss_dssp             HHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEEEECSSSTTSCCSEEEEES
T ss_pred             HHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEEEEEcCCCCCCCCEEEEecC
Confidence            9999865   99999999999999999999999999988899999999999997 479999999      7899999999


Q ss_pred             ccccc
Q psy7366         561 ATHLK  565 (566)
Q Consensus       561 ~~~l~  565 (566)
                      ++++.
T Consensus       937 ~~el~  941 (972)
T 2r6f_A          937 PEEVA  941 (972)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88763

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=100.00  E-value=3.6e-56  Score=508.33  Aligned_cols=370  Identities=22%  Similarity=0.281  Sum_probs=276.4

Q ss_pred             CCCCCHHHHHHHHHHhcCCChhh---------HHHHHHHHHHHcCCCcc-cccccccCChhHHHHHHHHHHHhCCCC--E
Q psy7366          44 NDRLTPREHLEFYSRVRNVPSVL---------LNTIVNESLNKFALGHY-SDREVRTLSGGNKRKLSTAIALLGNPP--L  111 (566)
Q Consensus        44 ~~~~tv~e~l~~~~~~~~~~~~~---------~~~~~~~~l~~~gl~~~-~~~~~~~LSgG~kqrl~iA~al~~~p~--v  111 (566)
                      +..+++.+++.|... ..++..+         ...+..+.|..+||... +++++.+|||||||||+||+||+.+|+  +
T Consensus       409 ~~~~~v~~~l~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~l  487 (916)
T 3pih_A          409 FTELSISEELEFLKN-LNLTEREREIVGELLKEIEKRLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVI  487 (916)
T ss_dssp             HHHSBHHHHHHHHHS-CCCCTTTTTTHHHHHHHHHHHHHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCE
T ss_pred             hhhCCHHHHHHHHHh-ccCcHHHHHHHHhhHHHHHHHHHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcE
Confidence            445789999987532 2222111         11234567888999864 799999999999999999999999887  9


Q ss_pred             EEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHHhhcCEEEEE------eCCEEEEecChhHHHhhccCcc
Q psy7366         112 IFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIM------VNGQFTCLGSATHLKSKSMALP  185 (566)
Q Consensus       112 LlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~~~d~i~vl------~~G~i~~~g~~~~~~~~~~~~~  185 (566)
                      |||||||+||||..+++|.++|++++++|.|||+||||++++.. ||||++|      ++|++++.|+++++......  
T Consensus       488 llLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~~~~~-aD~ii~lgpgag~~~G~iv~~G~~~e~~~~~~~--  564 (916)
T 3pih_A          488 YVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEVIRN-ADHIIDIGPGGGTNGGRVVFQGTVDELLKNPDS--  564 (916)
T ss_dssp             EEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHHHHHT-CSEEEEEESSSGGGCSEEEEEECHHHHHHSCTT--
T ss_pred             EEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh-CCEEEEEcCCcccCCCEEEEeechhhhhcCchh--
Confidence            99999999999999999999999998889999999999998875 9999999      89999999999987543110  


Q ss_pred             ccCCCCCCCCccchhHHHhhccCCCCccccCCCcccccccccccCCccchhhhhhhHHHHHHHHHHHHhhhhheeeccCC
Q psy7366         186 VSGNDLGRGDPVRSELSRALNDGSGSGIRNSARPEVSGFYNENIDGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNG  265 (566)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (566)
                                   ......+....                                                        
T Consensus       565 -------------~~~~~~l~~~~--------------------------------------------------------  575 (916)
T 3pih_A          565 -------------SLTGEYLSGKR--------------------------------------------------------  575 (916)
T ss_dssp             -------------CHHHHHHHSSS--------------------------------------------------------
T ss_pred             -------------cchhhhhhccc--------------------------------------------------------
Confidence                         00000000000                                                        


Q ss_pred             eeeeeeccchhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCcchhHHHHHHhhhcCCCCCCeEEE
Q psy7366         266 TRLVAVNIWAWRIIGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNLHPVPVSLEEDDVRKERERVEHGADSGDVLVV  345 (566)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  345 (566)
                                                                        ..... ..            .......+.+
T Consensus       576 --------------------------------------------------~~~~~-~~------------~~~~~~~l~v  592 (916)
T 3pih_A          576 --------------------------------------------------KITVN-KT------------RRLPYASLKI  592 (916)
T ss_dssp             --------------------------------------------------CCCCC-SS------------CCCCSSEEEE
T ss_pred             --------------------------------------------------ccccc-cc------------cccccceEEE
Confidence                                                              00000 00            0001224566


Q ss_pred             eeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHH---------HHHHCCCCCC------cc------EEE
Q psy7366         346 KRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTF---------KMLTGAIKPT------SG------NAY  404 (566)
Q Consensus       346 ~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl---------~~i~G~~~~~------~G------~i~  404 (566)
                      ++.+         ...|+|+||+|++|++++|+||||||||||+         +++.|...+.      +|      .+.
T Consensus       593 ~~~~---------~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~  663 (916)
T 3pih_A          593 KGVR---------HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIA  663 (916)
T ss_dssp             EEEC---------STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEE
T ss_pred             eeec---------cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEe
Confidence            5542         3469999999999999999999999999997         4555544333      22      244


Q ss_pred             EcCccCCCc----hH--------------------------------------HhcCceEEEecCCCCCC----------
Q psy7366         405 VMNHSIRDS----MD--------------------------------------LVRSYIGYCPQFDALND----------  432 (566)
Q Consensus       405 ~~g~~~~~~----~~--------------------------------------~~~~~i~~v~q~~~l~~----------  432 (566)
                      ++..++...    ..                                      ......||++++..+++          
T Consensus       664 idq~pig~~~rs~~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~  743 (916)
T 3pih_A          664 IDQSPIGRTPRSNPATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCK  743 (916)
T ss_dssp             ECSCCCCCCTTCCHHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTT
T ss_pred             eccccccccccccccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeeccccc
Confidence            444443210    00                                      00134578877765544          


Q ss_pred             ----------------------CCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCC-ccccCcCcCChhHHHHHHHH
Q psy7366         433 ----------------------RLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGH-YSDREVRTLSGGNKRKLSTA  489 (566)
Q Consensus       433 ----------------------~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqrv~la  489 (566)
                                            .+|+.|++.|+..   .   ....++.++|+.+||.. ..++++.+|||||||||+||
T Consensus       744 g~r~~~e~l~i~~~g~~i~~vl~~tv~eal~f~~~---~---~~~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LA  817 (916)
T 3pih_A          744 GKRYNRETLEITYKGKNISDILDMTVDEALEFFKN---I---PSIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLA  817 (916)
T ss_dssp             TSCBCTTGGGCCBTTBCHHHHHSSBHHHHHHHTTT---C---HHHHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHH
T ss_pred             ccccchhhhhhhhccCCHHHHhhCCHHHHHHHHhc---c---hhHHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHH
Confidence                                  3677787776532   1   12345678999999974 46899999999999999999


Q ss_pred             HHHcCCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEE------ECCEEEEecC
Q psy7366         490 IALLGNP---PLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIM------VNGQFTCLGS  560 (566)
Q Consensus       490 ~al~~~p---~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l------~~G~i~~~g~  560 (566)
                      |||+.+|   +||||||||+|||+.+++.++++|++++++|.|||+||||++++.. ||+|++|      ++|+|++.|+
T Consensus       818 raL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~-ADrIivLgp~gg~~~G~Iv~~Gt  896 (916)
T 3pih_A          818 SELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKN-ADHIIDLGPEGGKEGGYIVATGT  896 (916)
T ss_dssp             HHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTT-CSEEEEEESSSGGGCCEEEEEES
T ss_pred             HHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh-CCEEEEecCCCCCCCCEEEEEcC
Confidence            9999875   7999999999999999999999999998889999999999999865 9999999      8999999999


Q ss_pred             ccccc
Q psy7366         561 ATHLK  565 (566)
Q Consensus       561 ~~~l~  565 (566)
                      ++++.
T Consensus       897 peel~  901 (916)
T 3pih_A          897 PEEIA  901 (916)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99874

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=100.00  E-value=4e-57  Score=512.26  Aligned_cols=350  Identities=21%  Similarity=0.271  Sum_probs=266.1

Q ss_pred             hHHHHHHHHHHHcCCCcc-cccccccCChhHHHHHHHHHHHhCCC--CEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q psy7366          66 LLNTIVNESLNKFALGHY-SDREVRTLSGGNKRKLSTAIALLGNP--PLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC  142 (566)
Q Consensus        66 ~~~~~~~~~l~~~gl~~~-~~~~~~~LSgG~kqrl~iA~al~~~p--~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~t  142 (566)
                      ++.++++ .+..+||+.. +++++.+|||||||||+||++|+.+|  ++|||||||++||+.++++|+++|++|++.|.|
T Consensus       355 ei~~rl~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~T  433 (842)
T 2vf7_A          355 DLVKRLD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNS  433 (842)
T ss_dssp             HHHHHHH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCE
T ss_pred             HHHHHHH-HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCE
Confidence            4667776 6889999864 89999999999999999999999999  599999999999999999999999999888999


Q ss_pred             EEEecCChhHHHhhcCEEEEE------eCCEEEEecChhHHHhhccCccccCCCCCCCCccchhHHHhhccCCCCccccC
Q psy7366         143 VILTSHNMEECEALCTKLTIM------VNGQFTCLGSATHLKSKSMALPVSGNDLGRGDPVRSELSRALNDGSGSGIRNS  216 (566)
Q Consensus       143 viiisH~~~~~~~~~d~i~vl------~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (566)
                      ||+||||++++. .||+|++|      ++|++++.|+++++......                .....+..         
T Consensus       434 VIvVeHdl~~l~-~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~~~~~----------------~~~~~l~~---------  487 (842)
T 2vf7_A          434 LFVVEHDLDVIR-RADWLVDVGPEAGEKGGEILYSGPPEGLKHVPES----------------QTGQYLFA---------  487 (842)
T ss_dssp             EEEECCCHHHHT-TCSEEEEECSSSGGGCCSEEEEECGGGGGGCTTC----------------HHHHHHHT---------
T ss_pred             EEEEcCCHHHHH-hCCEEEEeCCCcccCCCEEEEecCHHHHHhchHH----------------HHHHHhhh---------
Confidence            999999999775 69999999      79999999998875421000                00000000         


Q ss_pred             CCcccccccccccCCccchhhhhhhHHHHHHHHHHHHhhhhheeeccCCeeeeeeccchhhchHHHHHHHHHHHHHHHHH
Q psy7366         217 ARPEVSGFYNENIDGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNGTRLVAVNIWAWRIIGKNLTCMACHGALYSAI  296 (566)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (566)
                                                                                                      
T Consensus       488 --------------------------------------------------------------------------------  487 (842)
T 2vf7_A          488 --------------------------------------------------------------------------------  487 (842)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHhhhhcccccCCCCCCCcchhHHHHHHhhhcCCCCCCeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEE
Q psy7366         297 NLSIEYKVFSRCFTRSNLHPVPVSLEEDDVRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFG  376 (566)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~  376 (566)
                                     .  ....  ...            .......|+++++++         .+|+|+||+|++|+++|
T Consensus       488 ---------------~--~~~~--~~~------------~~~~~~~L~v~~l~~---------~~L~~vsl~i~~Geiv~  527 (842)
T 2vf7_A          488 ---------------D--RHTE--PHT------------PREPAGWLELNGVTR---------NNLDNLDVRFPLGVMTS  527 (842)
T ss_dssp             ---------------C--CCCC--CCC------------CCCCSCEEEEEEEEE---------TTEEEEEEEEESSSEEE
T ss_pred             ---------------c--cccc--ccc------------cCCCCceEEEEeeee---------cccccceEEEcCCCEEE
Confidence                           0  0000  000            001124699999964         15999999999999999


Q ss_pred             EEcCCCCcHHHHHHH-HHCCC-------CC------------------Ccc-------EEEEcCccCCCch---------
Q psy7366         377 LLGLNGAGKTTTFKM-LTGAI-------KP------------------TSG-------NAYVMNHSIRDSM---------  414 (566)
Q Consensus       377 l~G~NGsGKSTLl~~-i~G~~-------~~------------------~~G-------~i~~~g~~~~~~~---------  414 (566)
                      |+|+||||||||+++ |+|++       +|                  .+|       .|.+++.++....         
T Consensus       528 I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~  607 (842)
T 2vf7_A          528 VTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTG  607 (842)
T ss_dssp             EECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CCCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSS
T ss_pred             EEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccccccCcccccceEEEECCeeCCCCccccchhhhh
Confidence            999999999999996 76543       23                  356       6888888774311         


Q ss_pred             --HHhcC---------ceEEEec----------------------CCCCC------------------------CCCCHH
Q psy7366         415 --DLVRS---------YIGYCPQ----------------------FDALN------------------------DRLTPR  437 (566)
Q Consensus       415 --~~~~~---------~i~~v~q----------------------~~~l~------------------------~~~tv~  437 (566)
                        ..+|.         ..||.++                      +..++                        ...|+.
T Consensus       608 ~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~  687 (842)
T 2vf7_A          608 LFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIA  687 (842)
T ss_dssp             THHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEETTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHH
T ss_pred             HHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchhhhcCCccceecccccCcccchhhHhhhhcCCCHH
Confidence              11111         1122222                      11111                        234555


Q ss_pred             HHHHHHH----HhcCCCchHHHHHHHHHHHHcCCCC-ccccCcCcCChhHHHHHHHHHHHcCC---CCEEEEeCCCCCCC
Q psy7366         438 EHLEFYS----RVRNVPSVLLNTIVNESLNKFALGH-YSDREVRTLSGGNKRKLSTAIALLGN---PPLIFLDEPTSGMD  509 (566)
Q Consensus       438 e~l~~~~----~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqrv~la~al~~~---p~lllLDEPt~gLD  509 (566)
                      |++.+..    .+... . ....++.++++.++|.. ..++++.+|||||||||+||++|+.+   |+||||||||+|||
T Consensus       688 e~l~ltv~e~l~~~~~-~-~~~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD  765 (842)
T 2vf7_A          688 DVLALTVDEAHDFFAD-E-SAIFRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLH  765 (842)
T ss_dssp             HHHTCBHHHHHHHTTT-S-HHHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCC
T ss_pred             HHHhccHHHHHHHhhc-c-hHHHHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCC
Confidence            5543211    11111 1 12346789999999986 46899999999999999999999996   79999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEE------ECCEEEEecCccccc
Q psy7366         510 PGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIM------VNGQFTCLGSATHLK  565 (566)
Q Consensus       510 ~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l------~~G~i~~~g~~~~l~  565 (566)
                      +..+..++++|++++++|.|||+||||++++ .+||||++|      ++|+|++.|+++++.
T Consensus       766 ~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~  826 (842)
T 2vf7_A          766 PADVERLQRQLVKLVDAGNTVIAVEHKMQVV-AASDWVLDIGPGAGEDGGRLVAQGTPAEVA  826 (842)
T ss_dssp             HHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEEEECSSSGGGCCSEEEEECHHHHT
T ss_pred             HHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEEEEECCCCCCCCCEEEEEcCHHHHH
Confidence            9999999999999988899999999999999 689999999      799999999988763

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=100.00  E-value=4.1e-55  Score=452.76  Aligned_cols=224  Identities=25%  Similarity=0.403  Sum_probs=206.2

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc-h---HH
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS-M---DL  416 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~---~~  416 (566)
                      .+|+++|+++.|+.+.+...+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++... .   ..
T Consensus        23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~  102 (366)
T 3tui_C           23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK  102 (366)
T ss_dssp             CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred             ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence            4799999999997433345799999999999999999999999999999999999999999999999998652 2   23


Q ss_pred             hcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCC
Q psy7366         417 VRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNP  496 (566)
Q Consensus       417 ~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p  496 (566)
                      .|++||||||++.+++.+||+||+.++....+.+..+..+++.++++.+||.+..++++.+|||||||||+|||||+.+|
T Consensus       103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P  182 (366)
T 3tui_C          103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNP  182 (366)
T ss_dssp             HHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCC
T ss_pred             HhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence            46789999999999999999999999887777777777788999999999999999999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         497 PLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       497 ~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      ++|||||||+|||+.++..++++|++++++ |.|||+||||++++..+||||++|++|++++.|+++++
T Consensus       183 ~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev  251 (366)
T 3tui_C          183 KVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV  251 (366)
T ss_dssp             SEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHH
T ss_pred             CEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence            999999999999999999999999999765 99999999999999999999999999999999998875

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=100.00  E-value=2.1e-54  Score=447.32  Aligned_cols=219  Identities=26%  Similarity=0.394  Sum_probs=201.0

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC---chHHhc
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD---SMDLVR  418 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~---~~~~~~  418 (566)
                      +|+++|+++.|+    +..+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++..   .....+
T Consensus         4 ~l~i~~ls~~y~----~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~   79 (359)
T 3fvq_A            4 ALHIGHLSKSFQ----NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRE   79 (359)
T ss_dssp             CEEEEEEEEEET----TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGG
T ss_pred             EEEEEeEEEEEC----CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhh
Confidence            589999999996    5779999999999999999999999999999999999999999999999998721   122345


Q ss_pred             CceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCE
Q psy7366         419 SYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPL  498 (566)
Q Consensus       419 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~l  498 (566)
                      ++||||||++.+|+.+||+||+.|+....+.+..+.++++.++++.++|.++.++++.+|||||||||+|||||+.+|++
T Consensus        80 r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~l  159 (359)
T 3fvq_A           80 RRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPEL  159 (359)
T ss_dssp             SCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred             CCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence            68999999999999999999999877655566666678899999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         499 IFLDEPTSGMDPGARRFLWTCIERAV-SEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       499 llLDEPt~gLD~~~~~~l~~~l~~~~-~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      |||||||+|||+..+..+++.|.++. +.|.|+|+||||++++..+||||++|++|+++..|+++++
T Consensus       160 LLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el  226 (359)
T 3fvq_A          160 ILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHEL  226 (359)
T ss_dssp             EEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHH
Confidence            99999999999999999999888765 4599999999999999999999999999999999999876

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=100.00  E-value=9.2e-54  Score=427.43  Aligned_cols=219  Identities=22%  Similarity=0.338  Sum_probs=199.1

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCC---CchHHhc
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR---DSMDLVR  418 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~---~~~~~~~  418 (566)
                      +|+++|+++.|+    ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.   .....++
T Consensus        24 ~l~i~~l~~~y~----~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~   99 (263)
T 2olj_A           24 MIDVHQLKKSFG----SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVR   99 (263)
T ss_dssp             SEEEEEEEEEET----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHH
T ss_pred             eEEEEeEEEEEC----CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHh
Confidence            699999999996    467999999999999999999999999999999999999999999999999874   1223456


Q ss_pred             CceEEEecCCCCCCCCCHHHHHHHHH-HhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCC
Q psy7366         419 SYIGYCPQFDALNDRLTPREHLEFYS-RVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPP  497 (566)
Q Consensus       419 ~~i~~v~q~~~l~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~  497 (566)
                      +++|||||++.+++.+||+||+.++. ...+.+.....+++.++++.+++.+..++++.+|||||||||+|||||+.+|+
T Consensus       100 ~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~  179 (263)
T 2olj_A          100 EEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPK  179 (263)
T ss_dssp             HHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred             CcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCC
Confidence            67999999999999999999998854 44444444455678899999999988999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         498 LIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       498 lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      +|||||||+|||+.++..++++|++++++|+|||++|||++++..+||++++|++|++++.|+++++
T Consensus       180 lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  246 (263)
T 2olj_A          180 IMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDL  246 (263)
T ss_dssp             EEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence            9999999999999999999999999987799999999999999999999999999999999988765

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=100.00  E-value=8.2e-54  Score=426.34  Aligned_cols=220  Identities=35%  Similarity=0.505  Sum_probs=201.5

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCc
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSY  420 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~  420 (566)
                      ++|+++|+++.|+    ++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.......+++
T Consensus        14 ~~l~i~~l~~~y~----~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~   89 (256)
T 1vpl_A           14 GAVVVKDLRKRIG----KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKL   89 (256)
T ss_dssp             CCEEEEEEEEEET----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTT
T ss_pred             CeEEEEEEEEEEC----CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhc
Confidence            5799999999996    567999999999999999999999999999999999999999999999999886544455678


Q ss_pred             eEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEE
Q psy7366         421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIF  500 (566)
Q Consensus       421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lll  500 (566)
                      +||+||++.+++.+||+||+.++....+.+.....+++.++++.+++.+..++++.+|||||||||+|||||+.+|++||
T Consensus        90 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lll  169 (256)
T 1vpl_A           90 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAI  169 (256)
T ss_dssp             EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEE
T ss_pred             EEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence            99999999999999999999987655454444445678899999999988999999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         501 LDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       501 LDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      |||||+|||+.++..++++|++++++|+|||++|||++++..+||++++|++|++++.|+++++
T Consensus       170 LDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  233 (256)
T 1vpl_A          170 LDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEEL  233 (256)
T ss_dssp             EESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHH
T ss_pred             EeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHH
Confidence            9999999999999999999999987799999999999999999999999999999999987765

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=100.00  E-value=7e-54  Score=422.28  Aligned_cols=223  Identities=23%  Similarity=0.367  Sum_probs=194.1

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc-hH----H
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS-MD----L  416 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~----~  416 (566)
                      +|+++|+++.|+......++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... ..    .
T Consensus         1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~   80 (235)
T 3tif_A            1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI   80 (235)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred             CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence            478999999997322224699999999999999999999999999999999999999999999999988642 21    1


Q ss_pred             hcCceEEEecCCCCCCCCCHHHHHHHHHHhc---CCCchHHHHHHHHHHHHcCCCCc-cccCcCcCChhHHHHHHHHHHH
Q psy7366         417 VRSYIGYCPQFDALNDRLTPREHLEFYSRVR---NVPSVLLNTIVNESLNKFALGHY-SDREVRTLSGGNKRKLSTAIAL  492 (566)
Q Consensus       417 ~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgGqkqrv~la~al  492 (566)
                      .++++||+||++.+++.+||.||+.++....   ..+.....+++.++++.+++.+. .++++.+|||||||||+|||||
T Consensus        81 ~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral  160 (235)
T 3tif_A           81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARAL  160 (235)
T ss_dssp             HHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHH
T ss_pred             hhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence            2456999999999999999999999876543   33444556778899999999875 4999999999999999999999


Q ss_pred             cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         493 LGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       493 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      +.+|++|||||||+|||+.++..++++|++++++ |.|||+||||++.+ .+|||+++|++|++++.++++++.
T Consensus       161 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~-~~~d~i~~l~~G~i~~~~~~~~~~  233 (235)
T 3tif_A          161 ANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVEREEKLRGFD  233 (235)
T ss_dssp             TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH-TTSSEEEEEETTEEEEEEECC---
T ss_pred             HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH-HhCCEEEEEECCEEEEEcChhhhc
Confidence            9999999999999999999999999999999765 99999999999865 789999999999999999888764

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=100.00  E-value=3.8e-54  Score=432.66  Aligned_cols=221  Identities=25%  Similarity=0.401  Sum_probs=200.4

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC---chHHh
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD---SMDLV  417 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~---~~~~~  417 (566)
                      .+|+++|+++.|+.   ...+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++..   ....+
T Consensus         6 ~~l~i~~ls~~y~~---~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~   82 (275)
T 3gfo_A            6 YILKVEELNYNYSD---GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKL   82 (275)
T ss_dssp             EEEEEEEEEEECTT---SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHH
T ss_pred             cEEEEEEEEEEECC---CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHH
Confidence            37999999999962   3459999999999999999999999999999999999999999999999999842   22345


Q ss_pred             cCceEEEecCCC-CCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCC
Q psy7366         418 RSYIGYCPQFDA-LNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNP  496 (566)
Q Consensus       418 ~~~i~~v~q~~~-l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p  496 (566)
                      +++||||||++. .+..+||+||+.++....+.+..+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|
T Consensus        83 ~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P  162 (275)
T 3gfo_A           83 RESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEP  162 (275)
T ss_dssp             HHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCC
T ss_pred             hCcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCC
Confidence            678999999973 3447899999999876666666666778999999999999999999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         497 PLIFLDEPTSGMDPGARRFLWTCIERAV-SEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       497 ~lllLDEPt~gLD~~~~~~l~~~l~~~~-~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      ++|||||||+|||+.++..++++|++++ ++|+|||+||||++++..+|||+++|++|+++++|+++++
T Consensus       163 ~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~  231 (275)
T 3gfo_A          163 KVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEV  231 (275)
T ss_dssp             SEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHH
T ss_pred             CEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence            9999999999999999999999999997 5599999999999999999999999999999999998875

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=100.00  E-value=6.8e-54  Score=446.45  Aligned_cols=218  Identities=25%  Similarity=0.425  Sum_probs=203.9

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCce
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYI  421 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i  421 (566)
                      .|+++|++|.|+    +..+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++..... .++.|
T Consensus         3 ~l~~~~l~~~yg----~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~-~~r~i   77 (381)
T 3rlf_A            3 SVQLQNVTKAWG----EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPP-AERGV   77 (381)
T ss_dssp             CEEEEEEEEEET----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG-GGSCE
T ss_pred             EEEEEeEEEEEC----CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCH-HHCCE
Confidence            489999999996    5779999999999999999999999999999999999999999999999999865322 24679


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEE
Q psy7366         422 GYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFL  501 (566)
Q Consensus       422 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllL  501 (566)
                      |||||++.+|+.+||+||+.|+....+.++.+.++++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||
T Consensus        78 g~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLL  157 (381)
T 3rlf_A           78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLL  157 (381)
T ss_dssp             EEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEE
T ss_pred             EEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            99999999999999999999988777777777778899999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         502 DEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       502 DEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      ||||++||+..+..+++.|+++.++ |.|+|+||||++++..+||||++|++|++++.|+++++
T Consensus       158 DEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l  221 (381)
T 3rlf_A          158 DEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL  221 (381)
T ss_dssp             ESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred             ECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHH
Confidence            9999999999999999999999766 99999999999999999999999999999999998876

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=100.00  E-value=1.2e-53  Score=427.29  Aligned_cols=219  Identities=22%  Similarity=0.329  Sum_probs=198.5

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC---------
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD---------  412 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~---------  412 (566)
                      +|+++|+++.|+    ++++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++..         
T Consensus         6 ~l~i~~l~~~y~----~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~   81 (262)
T 1b0u_A            6 KLHVIDLHKRYG----GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLK   81 (262)
T ss_dssp             CEEEEEEEEEET----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEE
T ss_pred             eEEEeeEEEEEC----CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccccccccccc
Confidence            699999999996    4679999999999999999999999999999999999999999999999998751         


Q ss_pred             --c---hHHhcCceEEEecCCCCCCCCCHHHHHHHHH-HhcCCCchHHHHHHHHHHHHcCCCCc-cccCcCcCChhHHHH
Q psy7366         413 --S---MDLVRSYIGYCPQFDALNDRLTPREHLEFYS-RVRNVPSVLLNTIVNESLNKFALGHY-SDREVRTLSGGNKRK  485 (566)
Q Consensus       413 --~---~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgGqkqr  485 (566)
                        .   ....++++|||||++.+++.+||.||+.++. ...+.+.....+++.++++.+++.+. .++++.+||||||||
T Consensus        82 ~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qR  161 (262)
T 1b0u_A           82 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQR  161 (262)
T ss_dssp             ESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHH
T ss_pred             ccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHH
Confidence              1   1234667999999999999999999998854 33444444455678899999999988 899999999999999


Q ss_pred             HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         486 LSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       486 v~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      |+|||||+.+|++|||||||+|||+.++..++++|++++++|.|||++|||++++..+|||+++|++|++++.|+++++
T Consensus       162 v~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  240 (262)
T 1b0u_A          162 VSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQV  240 (262)
T ss_dssp             HHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred             HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            9999999999999999999999999999999999999987799999999999999999999999999999999988765

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=100.00  E-value=2.9e-53  Score=415.04  Aligned_cols=214  Identities=24%  Similarity=0.351  Sum_probs=194.4

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc-hH---Hh
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS-MD---LV  417 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~---~~  417 (566)
                      +|+++|+++.|+    ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... ..   ..
T Consensus         4 ~l~~~~l~~~y~----~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~   79 (224)
T 2pcj_A            4 ILRAENIKKVIR----GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLL   79 (224)
T ss_dssp             EEEEEEEEEEET----TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHH
T ss_pred             EEEEEeEEEEEC----CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHH
Confidence            689999999996    46799999999999999999999999999999999999999999999999988542 11   22


Q ss_pred             c-CceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCC
Q psy7366         418 R-SYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNP  496 (566)
Q Consensus       418 ~-~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p  496 (566)
                      + ++++|+||++.+++.+||.||+.++....+.+.....+++.++++.+++.+..++++.+|||||||||+|||||+.+|
T Consensus        80 ~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p  159 (224)
T 2pcj_A           80 RNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEP  159 (224)
T ss_dssp             HHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCC
T ss_pred             HhCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCC
Confidence            3 679999999999999999999998765555444445667889999999999999999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecC
Q psy7366         497 PLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS  560 (566)
Q Consensus       497 ~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~  560 (566)
                      ++|||||||+|||+.++..++++|++++++|.|||++|||++++ .+||++++|++|+++++|+
T Consensus       160 ~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~v~~l~~G~i~~~g~  222 (224)
T 2pcj_A          160 ILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA-ELTHRTLEMKDGKVVGEIT  222 (224)
T ss_dssp             SEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH-TTSSEEEEEETTEEEEEEE
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH-HhCCEEEEEECCEEEEEee
Confidence            99999999999999999999999999987799999999999987 7999999999999999886

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=100.00  E-value=5.1e-53  Score=437.28  Aligned_cols=219  Identities=27%  Similarity=0.459  Sum_probs=202.1

Q ss_pred             CeEEEeeeEEEe-CCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcC
Q psy7366         341 DVLVVKRLFKIY-ANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRS  419 (566)
Q Consensus       341 ~~l~~~~l~~~y-~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~  419 (566)
                      .+|+++|+++.| +    ++.+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++.... ..++
T Consensus        13 ~~l~~~~l~~~y~g----~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~-~~~r   87 (355)
T 1z47_A           13 MTIEFVGVEKIYPG----GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLP-PQKR   87 (355)
T ss_dssp             EEEEEEEEEECCTT----STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCC-GGGS
T ss_pred             ceEEEEEEEEEEcC----CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCC-hhhC
Confidence            479999999999 5    467999999999999999999999999999999999999999999999999886422 2356


Q ss_pred             ceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEE
Q psy7366         420 YIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLI  499 (566)
Q Consensus       420 ~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~ll  499 (566)
                      +||||||++.+|+.+||+||+.|+....+.+....++++.++++.++|.++.++++.+|||||||||+|||||+.+|++|
T Consensus        88 ~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lL  167 (355)
T 1z47_A           88 NVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVL  167 (355)
T ss_dssp             SEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred             cEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence            89999999999999999999999876666665556678999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         500 FLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       500 lLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      ||||||++||+.++..+++.|+++.++ |.|+|+||||++++..+|||+++|++|+++..|+++++
T Consensus       168 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l  233 (355)
T 1z47_A          168 LFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEV  233 (355)
T ss_dssp             EEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence            999999999999999999999999765 99999999999999999999999999999999998875

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=100.00  E-value=5.4e-53  Score=423.01  Aligned_cols=219  Identities=19%  Similarity=0.338  Sum_probs=199.2

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcC
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRS  419 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~  419 (566)
                      .+|+++|+++.|+    ++++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.. .....++
T Consensus        10 ~~l~~~~l~~~~~----~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~   85 (266)
T 4g1u_C           10 ALLEASHLHYHVQ----QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALAR   85 (266)
T ss_dssp             CEEEEEEEEEEET----TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHH
T ss_pred             ceEEEEeEEEEeC----CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhh
Confidence            4799999999996    5789999999999999999999999999999999999999999999999999865 3445566


Q ss_pred             ceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcC-----
Q psy7366         420 YIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLG-----  494 (566)
Q Consensus       420 ~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~-----  494 (566)
                      .++|++|++.+++.+||.||+.++....  ......+++.++++.+++.+..++++.+|||||||||+|||||+.     
T Consensus        86 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~  163 (266)
T 4g1u_C           86 TRAVMRQYSELAFPFSVSEVIQMGRAPY--GGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQ  163 (266)
T ss_dssp             HEEEECSCCCCCSCCBHHHHHHGGGTTS--CSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSS
T ss_pred             eEEEEecCCccCCCCCHHHHHHhhhhhc--CcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccC
Confidence            7999999998888899999998865433  233445678899999999999999999999999999999999999     


Q ss_pred             -CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         495 -NPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       495 -~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                       +|++|||||||+|||+.++..++++|++++++ |+|||+||||++++..+|||+++|++|++++.|+++++.
T Consensus       164 ~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~  236 (266)
T 4g1u_C          164 PTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVL  236 (266)
T ss_dssp             CCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred             CCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence             99999999999999999999999999999765 679999999999999999999999999999999988763

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=100.00  E-value=9.2e-53  Score=436.86  Aligned_cols=218  Identities=25%  Similarity=0.414  Sum_probs=201.2

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCce
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYI  421 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i  421 (566)
                      +|+++|+++.|+    ++.+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++..... .+++|
T Consensus         3 ~l~~~~l~~~y~----~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~-~~r~i   77 (362)
T 2it1_A            3 EIKLENIVKKFG----NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPP-KDRNV   77 (362)
T ss_dssp             CEEEEEEEEESS----SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG-GGTTE
T ss_pred             EEEEEeEEEEEC----CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCH-hHCcE
Confidence            489999999996    4679999999999999999999999999999999999999999999999999864322 24679


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEE
Q psy7366         422 GYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFL  501 (566)
Q Consensus       422 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllL  501 (566)
                      |||||++.+|+.+||+||+.|+....+.+..+..+++.++++.++|.++.++++.+|||||||||+|||||+.+|++|||
T Consensus        78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLL  157 (362)
T 2it1_A           78 GLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLL  157 (362)
T ss_dssp             EEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred             EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            99999999999999999999987665666555667889999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         502 DEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       502 DEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      ||||++||+..+..+++.|+++.++ |.|+|+||||++++..+|||+++|++|+++..|+++++
T Consensus       158 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~  221 (362)
T 2it1_A          158 DEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEV  221 (362)
T ss_dssp             ESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred             ECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence            9999999999999999999999765 99999999999999999999999999999999998876

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=100.00  E-value=3e-53  Score=423.43  Aligned_cols=219  Identities=24%  Similarity=0.375  Sum_probs=197.4

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc--hHHhc
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS--MDLVR  418 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~--~~~~~  418 (566)
                      .+|+++|+++.|+    ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...  ....+
T Consensus         6 ~~l~i~~l~~~y~----~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~   81 (257)
T 1g6h_A            6 EILRTENIVKYFG----EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH   81 (257)
T ss_dssp             EEEEEEEEEEEET----TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHH
T ss_pred             cEEEEeeeEEEEC----CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHh
Confidence            3699999999996    46799999999999999999999999999999999999999999999999988542  23345


Q ss_pred             CceEEEecCCCCCCCCCHHHHHHHHHHh--cC-----------CCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHH
Q psy7366         419 SYIGYCPQFDALNDRLTPREHLEFYSRV--RN-----------VPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRK  485 (566)
Q Consensus       419 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~--~~-----------~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqr  485 (566)
                      +++||+||++.+++.+||.||+.++...  .+           .......+++.++++.+++.+..++++.+||||||||
T Consensus        82 ~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQr  161 (257)
T 1g6h_A           82 YGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKL  161 (257)
T ss_dssp             HTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHH
T ss_pred             CCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHH
Confidence            6799999999999999999999876432  12           2233445678899999999988999999999999999


Q ss_pred             HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccc
Q psy7366         486 LSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATH  563 (566)
Q Consensus       486 v~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~  563 (566)
                      |+|||||+.+|++|||||||+|||+.++..++++|++++++|+|||++|||++++..+|||+++|++|++++.|++++
T Consensus       162 v~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  239 (257)
T 1g6h_A          162 VEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE  239 (257)
T ss_dssp             HHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHH
T ss_pred             HHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeCHHH
Confidence            999999999999999999999999999999999999998779999999999999999999999999999999998876

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=100.00  E-value=9.7e-53  Score=415.58  Aligned_cols=219  Identities=26%  Similarity=0.358  Sum_probs=195.7

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc-hH-Hhc
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS-MD-LVR  418 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~-~~~  418 (566)
                      .+++++|+++.|+    ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... .. ..+
T Consensus         5 ~~l~~~~l~~~y~----~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~   80 (240)
T 1ji0_A            5 IVLEVQSLHVYYG----AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINR   80 (240)
T ss_dssp             EEEEEEEEEEEET----TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHH
T ss_pred             ceEEEEeEEEEEC----CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHh
Confidence            3799999999996    46799999999999999999999999999999999999999999999999988542 22 235


Q ss_pred             CceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcC-CCCccccCcCcCChhHHHHHHHHHHHcCCCC
Q psy7366         419 SYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFA-LGHYSDREVRTLSGGNKRKLSTAIALLGNPP  497 (566)
Q Consensus       419 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~LSgGqkqrv~la~al~~~p~  497 (566)
                      +++||+||++.+++.+||.||+.++.. .........+.+.++++.++ +.+..++++.+|||||||||+|||||+.+|+
T Consensus        81 ~~i~~v~q~~~l~~~ltv~enl~~~~~-~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~  159 (240)
T 1ji0_A           81 MGIALVPEGRRIFPELTVYENLMMGAY-NRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPK  159 (240)
T ss_dssp             TTEEEECSSCCCCTTSBHHHHHHGGGT-TCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCS
T ss_pred             CCEEEEecCCccCCCCcHHHHHHHhhh-cCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence            669999999999999999999987532 12223344567788999995 9888899999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         498 LIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       498 lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      +|||||||+|||+.++..++++|++++++|+|||++|||++++..+|||+++|++|++++.|+++++
T Consensus       160 lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  226 (240)
T 1ji0_A          160 LLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASEL  226 (240)
T ss_dssp             EEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHH
T ss_pred             EEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence            9999999999999999999999999987899999999999999999999999999999999987765

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=100.00  E-value=6.3e-53  Score=437.65  Aligned_cols=218  Identities=29%  Similarity=0.442  Sum_probs=198.9

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCce
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYI  421 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i  421 (566)
                      +|+++|+++.|+    ++.+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++..... .++++
T Consensus         3 ~l~~~~l~~~y~----~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~-~~r~i   77 (359)
T 2yyz_A            3 SIRVVNLKKYFG----KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPP-KYREV   77 (359)
T ss_dssp             CEEEEEEEEEET----TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG-GGTTE
T ss_pred             EEEEEEEEEEEC----CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCCh-hhCcE
Confidence            489999999996    5679999999999999999999999999999999999999999999999999865322 24679


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEE
Q psy7366         422 GYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFL  501 (566)
Q Consensus       422 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllL  501 (566)
                      |||||++.+|+.+||+||+.|+....+.+..+.++++.++++.++|.++.++++.+|||||||||+|||||+.+|++|||
T Consensus        78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLL  157 (359)
T 2yyz_A           78 GMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLF  157 (359)
T ss_dssp             EEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred             EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            99999999999999999999876544444334456789999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         502 DEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       502 DEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      ||||++||+..+..+++.|+++.++ |.|+|+||||++++..+|||+++|++|+++..|+++++
T Consensus       158 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l  221 (359)
T 2yyz_A          158 DEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEV  221 (359)
T ss_dssp             ESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred             ECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            9999999999999999999998765 99999999999999999999999999999999998876

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=100.00  E-value=1.8e-52  Score=437.05  Aligned_cols=219  Identities=26%  Similarity=0.436  Sum_probs=201.0

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc-----hHH
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS-----MDL  416 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-----~~~  416 (566)
                      +|+++|+++.|+    ++.+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...     ...
T Consensus         3 ~l~~~~l~~~y~----~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~   78 (372)
T 1g29_1            3 GVRLVDVWKVFG----EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP   78 (372)
T ss_dssp             EEEEEEEEEEET----TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG
T ss_pred             EEEEEeEEEEEC----CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH
Confidence            589999999996    56799999999999999999999999999999999999999999999999887431     112


Q ss_pred             hcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCC
Q psy7366         417 VRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNP  496 (566)
Q Consensus       417 ~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p  496 (566)
                      .+++||||||++.+|+.+||+||+.|+....+.+..+..+++.++++.++|.++.++++.+|||||||||+|||||+.+|
T Consensus        79 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P  158 (372)
T 1g29_1           79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKP  158 (372)
T ss_dssp             GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCC
T ss_pred             hHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence            35679999999999999999999999877666666566678899999999999999999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         497 PLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       497 ~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      ++|||||||++||+.++..+++.|+++.++ |.|+|+||||++++..+|||+++|++|+++..|+++++
T Consensus       159 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l  227 (372)
T 1g29_1          159 QVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV  227 (372)
T ss_dssp             SEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred             CEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence            999999999999999999999999998765 99999999999999999999999999999999998876

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=100.00  E-value=6.7e-53  Score=437.62  Aligned_cols=219  Identities=26%  Similarity=0.428  Sum_probs=200.4

Q ss_pred             eEEEeeeEEEeCCcCCCcc--eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc----hH
Q psy7366         342 VLVVKRLFKIYANSKGTKP--AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS----MD  415 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~--~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~----~~  415 (566)
                      +|+++|+++.|+    ++.  +|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...    ..
T Consensus         3 ~l~i~~l~~~y~----~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~   78 (353)
T 1oxx_K            3 RIIVKNVSKVFK----KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVP   78 (353)
T ss_dssp             CEEEEEEEEEEG----GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSC
T ss_pred             EEEEEeEEEEEC----CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCC
Confidence            589999999996    467  99999999999999999999999999999999999999999999999887431    22


Q ss_pred             HhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCC
Q psy7366         416 LVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGN  495 (566)
Q Consensus       416 ~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~  495 (566)
                      ..++++|||||++.+|+.+||+||+.|+....+.+.....+++.++++.++|.+..++++.+|||||||||+|||||+.+
T Consensus        79 ~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~  158 (353)
T 1oxx_K           79 PEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKD  158 (353)
T ss_dssp             GGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTC
T ss_pred             hhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhC
Confidence            34578999999999999999999999876655555555567889999999999999999999999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         496 PPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       496 p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      |++|||||||++||+..+..+++.|+++.++ |.|+|+||||++++..+|||+++|++|+++..|+++++
T Consensus       159 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l  228 (353)
T 1oxx_K          159 PSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL  228 (353)
T ss_dssp             CSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred             CCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence            9999999999999999999999999999765 99999999999999999999999999999999998875

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=100.00  E-value=1.6e-52  Score=436.53  Aligned_cols=218  Identities=25%  Similarity=0.388  Sum_probs=193.5

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCce
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYI  421 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i  421 (566)
                      +|+++|+++.|+    ++.+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++..... .+++|
T Consensus        11 ~l~~~~l~~~y~----~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~-~~r~i   85 (372)
T 1v43_A           11 EVKLENLTKRFG----NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPP-KDRNI   85 (372)
T ss_dssp             CEEEEEEEEEET----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG-GGGTE
T ss_pred             eEEEEEEEEEEC----CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCCh-hhCcE
Confidence            499999999996    5679999999999999999999999999999999999999999999999998864322 24679


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEE
Q psy7366         422 GYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFL  501 (566)
Q Consensus       422 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllL  501 (566)
                      |||||++.+|+.+||+||+.|+....+.+..+..+++.++++.++|.++.++++.+|||||||||+|||||+.+|++|||
T Consensus        86 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLL  165 (372)
T 1v43_A           86 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLM  165 (372)
T ss_dssp             EEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEE
T ss_pred             EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            99999999999999999999876544555555567889999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         502 DEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       502 DEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      ||||++||+..+..+++.|+++.++ |.|+|+||||++++..+|||+++|++|+++..|+++++
T Consensus       166 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l  229 (372)
T 1v43_A          166 DEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEV  229 (372)
T ss_dssp             ESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred             cCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            9999999999999999999999765 99999999999999999999999999999999998876

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=100.00  E-value=2.5e-52  Score=431.78  Aligned_cols=214  Identities=24%  Similarity=0.431  Sum_probs=196.3

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCce
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYI  421 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i  421 (566)
                      +|+++|+++.|+    ++ +|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++..... .+++|
T Consensus         1 ml~~~~l~~~y~----~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~-~~r~i   74 (348)
T 3d31_A            1 MIEIESLSRKWK----NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP-EKHDI   74 (348)
T ss_dssp             CEEEEEEEEECS----SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH-HHHTC
T ss_pred             CEEEEEEEEEEC----CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch-hhCcE
Confidence            478999999996    45 9999999999999999999999999999999999999999999999998864222 34679


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEE
Q psy7366         422 GYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFL  501 (566)
Q Consensus       422 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllL  501 (566)
                      |||||++.+|+.+||+||+.|+....+.+..   +++.++++.++|.+..++++.+|||||||||+|||||+.+|++|||
T Consensus        75 g~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~---~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLL  151 (348)
T 3d31_A           75 AFVYQNYSLFPHMNVKKNLEFGMRMKKIKDP---KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLL  151 (348)
T ss_dssp             EEECTTCCCCTTSCHHHHHHHHHHHHCCCCH---HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEE
T ss_pred             EEEecCcccCCCCCHHHHHHHHHHHcCCCHH---HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            9999999999999999999997665444332   6688999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         502 DEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       502 DEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      ||||++||+..+..+++.|+++.++ |.|+|+||||++++..+|||+++|++|+++..|+++++
T Consensus       152 DEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~  215 (348)
T 3d31_A          152 DEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEI  215 (348)
T ss_dssp             ESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHH
T ss_pred             ECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence            9999999999999999999998754 99999999999999999999999999999999998876

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=100.00  E-value=4.8e-52  Score=409.92  Aligned_cols=213  Identities=27%  Similarity=0.403  Sum_probs=191.1

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCce
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYI  421 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i  421 (566)
                      +++++|+++.|+    +  +|+|+||+|++ |+++|+||||||||||+|+|+|+++|++|+|.++|+++... ...++++
T Consensus         1 ml~~~~l~~~y~----~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~i   72 (240)
T 2onk_A            1 MFLKVRAEKRLG----N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPL-PPERRGI   72 (240)
T ss_dssp             CCEEEEEEEEET----T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTS-CTTTSCC
T ss_pred             CEEEEEEEEEeC----C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcC-chhhCcE
Confidence            378999999996    2  59999999999 99999999999999999999999999999999999987542 2235679


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEE
Q psy7366         422 GYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFL  501 (566)
Q Consensus       422 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllL  501 (566)
                      ||+||++.+++.+||+||+.++....+  .....+++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||
T Consensus        73 ~~v~q~~~l~~~ltv~enl~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllL  150 (240)
T 2onk_A           73 GFVPQDYALFPHLSVYRNIAYGLRNVE--RVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLL  150 (240)
T ss_dssp             BCCCSSCCCCTTSCHHHHHHTTCTTSC--HHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEE
T ss_pred             EEEcCCCccCCCCcHHHHHHHHHHHcC--CchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            999999999999999999987643222  112256788999999999989999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         502 DEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       502 DEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      ||||+|||+.+++.++++|++++++ |+|||++|||++++..+||++++|++|++++.|+++++
T Consensus       151 DEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~  214 (240)
T 2onk_A          151 DEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKEL  214 (240)
T ss_dssp             ESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred             eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence            9999999999999999999998764 99999999999999999999999999999999988765

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=100.00  E-value=1.9e-51  Score=412.42  Aligned_cols=218  Identities=26%  Similarity=0.414  Sum_probs=193.7

Q ss_pred             eEEEeeeEEEeCCcCCC---cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhc
Q psy7366         342 VLVVKRLFKIYANSKGT---KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR  418 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~  418 (566)
                      +++++|+++.|+.  ++   +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...  ..+
T Consensus         2 ~l~~~~l~~~y~~--~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~--~~~   77 (266)
T 2yz2_A            2 RIEVVNVSHIFHR--GTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY--EIR   77 (266)
T ss_dssp             CEEEEEEEEEEST--TSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH--HHG
T ss_pred             EEEEEEEEEEecC--CCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH--Hhh
Confidence            5899999999951  12   5699999999999999999999999999999999999999999999999987542  456


Q ss_pred             CceEEEecCC-CCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCC--CccccCcCcCChhHHHHHHHHHHHcCC
Q psy7366         419 SYIGYCPQFD-ALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALG--HYSDREVRTLSGGNKRKLSTAIALLGN  495 (566)
Q Consensus       419 ~~i~~v~q~~-~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgGqkqrv~la~al~~~  495 (566)
                      +++||+||++ .+++.+||.||+.++.... .+.....+++.++++.+++.  +..++++.+|||||||||+|||||+.+
T Consensus        78 ~~i~~v~q~~~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~  156 (266)
T 2yz2_A           78 RNIGIAFQYPEDQFFAERVFDEVAFAVKNF-YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHE  156 (266)
T ss_dssp             GGEEEECSSGGGGCCCSSHHHHHHHTTTTT-CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTC
T ss_pred             hhEEEEeccchhhcCCCcHHHHHHHHHHhc-CCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcC
Confidence            7899999996 4566789999998864322 22223345688999999999  889999999999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         496 PPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       496 p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      |++|||||||+|||+.++..++++|++++++|.|||++|||++++..+||++++|++|++++.|+++++
T Consensus       157 p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  225 (266)
T 2yz2_A          157 PDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEF  225 (266)
T ss_dssp             CSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHH
T ss_pred             CCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            999999999999999999999999999977799999999999999999999999999999999987765

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=100.00  E-value=1.1e-51  Score=416.02  Aligned_cols=220  Identities=24%  Similarity=0.323  Sum_probs=192.7

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCC--C-chHHh
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR--D-SMDLV  417 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~--~-~~~~~  417 (566)
                      .+|+++|+++.|+    ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.  . ....+
T Consensus        20 ~~l~~~~l~~~y~----~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~   95 (279)
T 2ihy_A           20 MLIQLDQIGRMKQ----GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETV   95 (279)
T ss_dssp             EEEEEEEEEEEET----TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHH
T ss_pred             ceEEEEeEEEEEC----CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHH
Confidence            3699999999996    467999999999999999999999999999999999999999999999999875  3 23445


Q ss_pred             cCceEEEecCCCC--CCCCCHHHHHHHHHH----hcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHH
Q psy7366         418 RSYIGYCPQFDAL--NDRLTPREHLEFYSR----VRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIA  491 (566)
Q Consensus       418 ~~~i~~v~q~~~l--~~~~tv~e~l~~~~~----~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~a  491 (566)
                      +++|||+||++.+  ++.+||+||+.+...    ..+.......+++.++++.+++.+..++++.+|||||||||+||||
T Consensus        96 ~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAra  175 (279)
T 2ihy_A           96 RQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARA  175 (279)
T ss_dssp             HTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHH
T ss_pred             cCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHH
Confidence            6789999999753  345799999987421    1112233445678899999999988999999999999999999999


Q ss_pred             HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEE--EEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         492 LLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCV--ILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       492 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tv--l~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      |+.+|++|||||||+|||+.+++.++++|++++++|+||  |++|||++++..+||++++|++|++++.|+++++
T Consensus       176 L~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  250 (279)
T 2ihy_A          176 LMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDI  250 (279)
T ss_dssp             HHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHHHH
T ss_pred             HhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence            999999999999999999999999999999997668999  9999999999999999999999999999988765

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=100.00  E-value=2.1e-50  Score=401.23  Aligned_cols=217  Identities=22%  Similarity=0.283  Sum_probs=187.0

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCC--CCCCccEEEEcCccCCCc-hH-Hh
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA--IKPTSGNAYVMNHSIRDS-MD-LV  417 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~--~~~~~G~i~~~g~~~~~~-~~-~~  417 (566)
                      +++++|+++.|+    ++++|+|+||+|++||+++|+||||||||||+|+|+|+  ++|++|+|.++|+++... .. ..
T Consensus         3 ~l~~~~l~~~y~----~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~   78 (250)
T 2d2e_A            3 QLEIRDLWASID----GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERA   78 (250)
T ss_dssp             EEEEEEEEEEET----TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHH
T ss_pred             eEEEEeEEEEEC----CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHH
Confidence            589999999996    46799999999999999999999999999999999999  789999999999988642 22 23


Q ss_pred             cCceEEEecCCCCCCCCCHHHHHHHHHH-hcC--CCchHHHHHHHHHHHHcCCC-CccccCcCc-CChhHHHHHHHHHHH
Q psy7366         418 RSYIGYCPQFDALNDRLTPREHLEFYSR-VRN--VPSVLLNTIVNESLNKFALG-HYSDREVRT-LSGGNKRKLSTAIAL  492 (566)
Q Consensus       418 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~-~~~--~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LSgGqkqrv~la~al  492 (566)
                      +..++|+||++.+++.+|+.||+.+... ..+  .......+++.++++.+++. +..++++.+ |||||||||+|||||
T Consensus        79 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL  158 (250)
T 2d2e_A           79 RKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLL  158 (250)
T ss_dssp             HTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHH
T ss_pred             hCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHH
Confidence            4569999999999999999999987542 122  12233346688999999994 788999999 999999999999999


Q ss_pred             cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhh-CCEEEEEECCEEEEecCcc
Q psy7366         493 LGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEAL-CTKLTIMVNGQFTCLGSAT  562 (566)
Q Consensus       493 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~-~drv~~l~~G~i~~~g~~~  562 (566)
                      +.+|++|||||||+|||+.++..++++|++++++|+|||++|||++++..+ |||+++|++|++++.|+++
T Consensus       159 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~  229 (250)
T 2d2e_A          159 VLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPE  229 (250)
T ss_dssp             HHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHH
T ss_pred             HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHH
Confidence            999999999999999999999999999999876799999999999999988 5999999999999999876

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=100.00  E-value=1.5e-49  Score=395.43  Aligned_cols=207  Identities=25%  Similarity=0.394  Sum_probs=186.6

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCce
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYI  421 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i  421 (566)
                      +|+++|+++.|+.   ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+            ++++
T Consensus         4 ~l~i~~l~~~y~~---~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~------------~~~i   68 (253)
T 2nq2_C            4 ALSVENLGFYYQA---ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV------------YQSI   68 (253)
T ss_dssp             EEEEEEEEEEETT---TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEE------------CSCE
T ss_pred             eEEEeeEEEEeCC---CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE------------eccE
Confidence            6899999999951   357999999999999999999999999999999999999999999982            3469


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHHhc-C---CCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCC
Q psy7366         422 GYCPQFDALNDRLTPREHLEFYSRVR-N---VPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPP  497 (566)
Q Consensus       422 ~~v~q~~~l~~~~tv~e~l~~~~~~~-~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~  497 (566)
                      +|+||++.+++.+||.||+.++.... +   .+.....+++.++++.+++.+..++++.+|||||||||+|||||+.+|+
T Consensus        69 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~  148 (253)
T 2nq2_C           69 GFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECK  148 (253)
T ss_dssp             EEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCS
T ss_pred             EEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence            99999999888899999998864321 1   1233445678899999999988999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         498 LIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       498 lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      +|||||||+|||+.++..++++|++++++ |.|||++|||++++..+||++++|++|+ ++.|+++++
T Consensus       149 lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~  215 (253)
T 2nq2_C          149 LILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNI  215 (253)
T ss_dssp             EEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHH
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHH
Confidence            99999999999999999999999999877 9999999999999999999999999999 888887765

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=100.00  E-value=7.1e-50  Score=400.99  Aligned_cols=220  Identities=20%  Similarity=0.264  Sum_probs=191.2

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCC--CCCCccEEEEcCccCCCc-hHH-
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA--IKPTSGNAYVMNHSIRDS-MDL-  416 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~--~~~~~G~i~~~g~~~~~~-~~~-  416 (566)
                      .+|+++|+++.|+    ++++|+|+||+|++||+++|+||||||||||+|+|+|+  ++|++|+|.++|+++... ... 
T Consensus        19 ~~l~~~~l~~~y~----~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~   94 (267)
T 2zu0_C           19 HMLSIKDLHVSVE----DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDR   94 (267)
T ss_dssp             -CEEEEEEEEEET----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHH
T ss_pred             ceEEEEeEEEEEC----CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence            3699999999996    56799999999999999999999999999999999999  468999999999987542 222 


Q ss_pred             hcCceEEEecCCCCCCCCCHHHHHHHHHH-h---cC---CCchHHHHHHHHHHHHcCCC-CccccCcC-cCChhHHHHHH
Q psy7366         417 VRSYIGYCPQFDALNDRLTPREHLEFYSR-V---RN---VPSVLLNTIVNESLNKFALG-HYSDREVR-TLSGGNKRKLS  487 (566)
Q Consensus       417 ~~~~i~~v~q~~~l~~~~tv~e~l~~~~~-~---~~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~-~LSgGqkqrv~  487 (566)
                      .+..++|+||++.+++.+|+.||+.+... .   .+   .+.....+++.++++.+++. ...++++. +|||||||||+
T Consensus        95 ~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~  174 (267)
T 2zu0_C           95 AGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRND  174 (267)
T ss_dssp             HHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHH
T ss_pred             hhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHH
Confidence            24569999999999999999999976431 1   11   22333456788999999996 57788987 59999999999


Q ss_pred             HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhh-CCEEEEEECCEEEEecCcccc
Q psy7366         488 TAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEAL-CTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       488 la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~-~drv~~l~~G~i~~~g~~~~l  564 (566)
                      |||||+.+|++|||||||+|||+.++..++++|++++++|+|||++|||++++..+ |||+++|++|++++.|+++++
T Consensus       175 iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~~  252 (267)
T 2zu0_C          175 ILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLV  252 (267)
T ss_dssp             HHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECTTHH
T ss_pred             HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCHHHH
Confidence            99999999999999999999999999999999999876699999999999999886 999999999999999998765

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=100.00  E-value=7.5e-50  Score=396.21  Aligned_cols=209  Identities=20%  Similarity=0.305  Sum_probs=188.9

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCc
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSY  420 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~  420 (566)
                      +++++|+++.        ++|+|+||+|++||+++|+||||||||||+|+|+|+++|+ |+|.++|+++.. ....++++
T Consensus         4 ~l~~~~l~~~--------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~   74 (249)
T 2qi9_C            4 VMQLQDVAES--------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALH   74 (249)
T ss_dssp             EEEEEEEEET--------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHH
T ss_pred             EEEEEceEEE--------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhce
Confidence            6899999873        4899999999999999999999999999999999999999 999999998753 23445677


Q ss_pred             eEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCC---
Q psy7366         421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPP---  497 (566)
Q Consensus       421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~---  497 (566)
                      ++|+||++.+++.+||+||+.++.. ....    .+.+.++++.+++.+..++++.+|||||||||+|||||+.+|+   
T Consensus        75 i~~v~q~~~~~~~~tv~e~l~~~~~-~~~~----~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~  149 (249)
T 2qi9_C           75 RAYLSQQQTPPFATPVWHYLTLHQH-DKTR----TELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQAN  149 (249)
T ss_dssp             EEEECSCCCCCTTCBHHHHHHTTCS-STTC----HHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTC
T ss_pred             EEEECCCCccCCCCcHHHHHHHhhc-cCCc----HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCC
Confidence            9999999999999999999987521 1111    4567899999999998999999999999999999999999999   


Q ss_pred             ----EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         498 ----LIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       498 ----lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                          +|||||||+|||+.++..++++|++++++|+|||++|||++++..+||++++|++|++++.|+++++
T Consensus       150 ~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  220 (249)
T 2qi9_C          150 PAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEV  220 (249)
T ss_dssp             TTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHH
T ss_pred             CCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence                9999999999999999999999999977799999999999999999999999999999999988765

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=100.00  E-value=5.8e-50  Score=402.31  Aligned_cols=219  Identities=20%  Similarity=0.315  Sum_probs=188.1

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcC
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRS  419 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~  419 (566)
                      .+|+++|+++.|+.. +.+++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. ....+++
T Consensus        15 ~~l~~~~l~~~y~~~-~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~   93 (271)
T 2ixe_A           15 GLVKFQDVSFAYPNH-PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT   93 (271)
T ss_dssp             CCEEEEEEEECCTTC-TTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred             ceEEEEEEEEEeCCC-CCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhc
Confidence            469999999999621 12579999999999999999999999999999999999999999999999998754 2344567


Q ss_pred             ceEEEecCCCCCCCCCHHHHHHHHHHhcCCCc-hHH-----HHHHHHHHHHc--CCCCccccCcCcCChhHHHHHHHHHH
Q psy7366         420 YIGYCPQFDALNDRLTPREHLEFYSRVRNVPS-VLL-----NTIVNESLNKF--ALGHYSDREVRTLSGGNKRKLSTAIA  491 (566)
Q Consensus       420 ~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~-~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LSgGqkqrv~la~a  491 (566)
                      +|+||||++.+|+ .||+||+.++...  ... ...     ...+.++++.+  ++....++++.+|||||||||+||||
T Consensus        94 ~i~~v~Q~~~l~~-~tv~enl~~~~~~--~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAra  170 (271)
T 2ixe_A           94 QVAAVGQEPLLFG-RSFRENIAYGLTR--TPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARA  170 (271)
T ss_dssp             HEEEECSSCCCCS-SBHHHHHHTTCSS--CCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHH
T ss_pred             cEEEEecCCcccc-ccHHHHHhhhccc--CChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHH
Confidence            8999999998887 5999999875321  111 111     12345677777  67778899999999999999999999


Q ss_pred             HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         492 LLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS-EGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       492 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      |+.+|++|||||||+|||+.++..++++|+++.+ +|+|||+||||++++.. ||++++|++|++++.|+++++
T Consensus       171 L~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~-~d~v~~l~~G~i~~~g~~~~l  243 (271)
T 2ixe_A          171 LIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER-AHHILFLKEGSVCEQGTHLQL  243 (271)
T ss_dssp             HTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT-CSEEEEEETTEEEEEECHHHH
T ss_pred             HhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEECCHHHH
Confidence            9999999999999999999999999999999865 48999999999999875 999999999999999988765

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=100.00  E-value=1.1e-49  Score=395.05  Aligned_cols=213  Identities=20%  Similarity=0.371  Sum_probs=182.7

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcC
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRS  419 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~  419 (566)
                      .-++++|+++.|+.  +++.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ....+++
T Consensus         6 ~~~~~~~l~~~y~~--~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~   83 (247)
T 2ff7_A            6 HDITFRNIRFRYKP--DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRR   83 (247)
T ss_dssp             EEEEEEEEEEESST--TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHH
T ss_pred             CceeEEEEEEEeCC--CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHh
Confidence            35899999999931  14579999999999999999999999999999999999999999999999998864 3344567


Q ss_pred             ceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCc-----------cccCcCcCChhHHHHHHH
Q psy7366         420 YIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHY-----------SDREVRTLSGGNKRKLST  488 (566)
Q Consensus       420 ~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGqkqrv~l  488 (566)
                      +|||+||++.+|+ .||+||+.++..  ...    .+.+.++++.+++.+.           .++++.+|||||||||+|
T Consensus        84 ~i~~v~Q~~~l~~-~tv~enl~~~~~--~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~i  156 (247)
T 2ff7_A           84 QVGVVLQDNVLLN-RSIIDNISLANP--GMS----VEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAI  156 (247)
T ss_dssp             HEEEECSSCCCTT-SBHHHHHTTTCT--TCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHH
T ss_pred             cEEEEeCCCcccc-ccHHHHHhccCC--CCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHH
Confidence            8999999998886 599999987521  111    2345566666666433           345678999999999999


Q ss_pred             HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         489 AIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       489 a~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      ||||+.+|++|||||||+|||+.++..++++|+++. +|+|||++|||++++.. ||++++|++|++++.|+++++
T Consensus       157 AraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l  230 (247)
T 2ff7_A          157 ARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLSTVKN-ADRIIVMEKGKIVEQGKHKEL  230 (247)
T ss_dssp             HHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGGGTT-SSEEEEEETTEEEEEECHHHH
T ss_pred             HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEECCHHHH
Confidence            999999999999999999999999999999999984 59999999999998865 999999999999999998776

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=100.00  E-value=5.2e-50  Score=388.21  Aligned_cols=204  Identities=22%  Similarity=0.328  Sum_probs=180.8

Q ss_pred             CCCeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhc
Q psy7366         339 SGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR  418 (566)
Q Consensus       339 ~~~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~  418 (566)
                      .+.+|+++|+++.|+    + ++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.    ..+
T Consensus         7 ~~~~l~~~~ls~~y~----~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~----~~~   77 (214)
T 1sgw_A            7 HGSKLEIRDLSVGYD----K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT----KVK   77 (214)
T ss_dssp             --CEEEEEEEEEESS----S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG----GGG
T ss_pred             CCceEEEEEEEEEeC----C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh----hhc
Confidence            356899999999996    5 7999999999999999999999999999999999999999999999998874    246


Q ss_pred             CceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCE
Q psy7366         419 SYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPL  498 (566)
Q Consensus       419 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~l  498 (566)
                      +.++|+||++.+++.+||.||+.++....+. ... .+++.++++.+++.+. ++++.+|||||||||+|||||+.+|++
T Consensus        78 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~-~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~l  154 (214)
T 1sgw_A           78 GKIFFLPEEIIVPRKISVEDYLKAVASLYGV-KVN-KNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEI  154 (214)
T ss_dssp             GGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-CCC-HHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSE
T ss_pred             CcEEEEeCCCcCCCCCCHHHHHHHHHHhcCC-chH-HHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCE
Confidence            7899999999999999999999887554332 222 4567899999999888 999999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEE
Q psy7366         499 IFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQF  555 (566)
Q Consensus       499 llLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i  555 (566)
                      |||||||+|||+.++..++++|++++++|+|||++|||++++..+||+++++ .|+|
T Consensus       155 llLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~-~~~~  210 (214)
T 1sgw_A          155 YVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKY-STKI  210 (214)
T ss_dssp             EEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred             EEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence            9999999999999999999999998766899999999999999999998754 4544

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=100.00  E-value=3.7e-49  Score=401.42  Aligned_cols=212  Identities=23%  Similarity=0.348  Sum_probs=183.4

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCc
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSY  420 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~  420 (566)
                      .|+++|+++.|+.   ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|++
T Consensus        53 ~i~~~~vs~~y~~---~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~  129 (306)
T 3nh6_A           53 RIEFENVHFSYAD---GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSH  129 (306)
T ss_dssp             CEEEEEEEEESST---TCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHT
T ss_pred             eEEEEEEEEEcCC---CCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcc
Confidence            5999999999962   4679999999999999999999999999999999999999999999999999976 44567788


Q ss_pred             eEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcC-----------CCCccccCcCcCChhHHHHHHHH
Q psy7366         421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFA-----------LGHYSDREVRTLSGGNKRKLSTA  489 (566)
Q Consensus       421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSgGqkqrv~la  489 (566)
                      ||||||++.+|+ .||+||+.++....  ..    ..+.++++.++           +....+++..+|||||||||+||
T Consensus       130 i~~v~Q~~~lf~-~Tv~eNi~~~~~~~--~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiA  202 (306)
T 3nh6_A          130 IGVVPQDTVLFN-DTIADNIRYGRVTA--GN----DEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIA  202 (306)
T ss_dssp             EEEECSSCCCCS-EEHHHHHHTTSTTC--CH----HHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHH
T ss_pred             eEEEecCCccCc-ccHHHHHHhhcccC--CH----HHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHH
Confidence            999999999886 59999998753211  11    22333444443           34445677789999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         490 IALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       490 ~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      |||+.+|+||||||||++||+.+...|++.|+++.+ ++|+|+|||+++.+.. ||+|++|++|+|++.|+++++.
T Consensus       203 RAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~~~~-aD~i~vl~~G~iv~~G~~~el~  276 (306)
T 3nh6_A          203 RTILKAPGIILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHRLSTVVN-ADQILVIKDGCIVERGRHEALL  276 (306)
T ss_dssp             HHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEEECCSHHHHHT-CSEEEEEETTEEEEEECHHHHH
T ss_pred             HHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEcChHHHHc-CCEEEEEECCEEEEECCHHHHH
Confidence            999999999999999999999999999999999854 7999999999999987 9999999999999999998763

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=100.00  E-value=5.5e-49  Score=392.88  Aligned_cols=211  Identities=23%  Similarity=0.330  Sum_probs=186.5

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCce
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYI  421 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i  421 (566)
                      +++++|+++.|+...+.+++|+++||+|+ |++++|+||||||||||+|+|+|++ |++|+|.++|+++... .. ++++
T Consensus         1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~-~~-~~~i   76 (263)
T 2pjz_A            1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI-RN-YIRY   76 (263)
T ss_dssp             CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC-SC-CTTE
T ss_pred             CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch-HH-hhhe
Confidence            47899999999621001679999999999 9999999999999999999999999 9999999999887533 22 6689


Q ss_pred             E-EEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCC-CccccCcCcCChhHHHHHHHHHHHcCCCCEE
Q psy7366         422 G-YCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALG-HYSDREVRTLSGGNKRKLSTAIALLGNPPLI  499 (566)
Q Consensus       422 ~-~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqrv~la~al~~~p~ll  499 (566)
                      + |+||++.+  .+|+.||+.++......    ..+++.++++.+++. +..++++.+|||||||||+|||||+.+|++|
T Consensus        77 ~~~v~Q~~~l--~~tv~enl~~~~~~~~~----~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ll  150 (263)
T 2pjz_A           77 STNLPEAYEI--GVTVNDIVYLYEELKGL----DRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIV  150 (263)
T ss_dssp             EECCGGGSCT--TSBHHHHHHHHHHHTCC----CHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEE
T ss_pred             EEEeCCCCcc--CCcHHHHHHHhhhhcch----HHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEE
Confidence            9 99999887  78999999887544321    235678999999999 8899999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCC-EEEEEECCEEEEecCccccc
Q psy7366         500 FLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCT-KLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       500 lLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~d-rv~~l~~G~i~~~g~~~~l~  565 (566)
                      ||||||+|||+.++..+++.|+++++   |||++|||++++..+|| ++++|++|++++.|+++++.
T Consensus       151 lLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~  214 (263)
T 2pjz_A          151 GLDEPFENVDAARRHVISRYIKEYGK---EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELL  214 (263)
T ss_dssp             EEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHH
T ss_pred             EEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHH
Confidence            99999999999999999999998753   99999999999999999 99999999999999988763

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=100.00  E-value=3e-49  Score=391.44  Aligned_cols=212  Identities=24%  Similarity=0.395  Sum_probs=183.4

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCc
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSY  420 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~  420 (566)
                      +++++|+++.|+   +++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ....++++
T Consensus         1 ml~~~~l~~~y~---~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~   77 (243)
T 1mv5_A            1 MLSARHVDFAYD---DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQ   77 (243)
T ss_dssp             CEEEEEEEECSS---SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTT
T ss_pred             CEEEEEEEEEeC---CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhh
Confidence            478999999994   24679999999999999999999999999999999999999999999999998754 22335678


Q ss_pred             eEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccc-----------cCcCcCChhHHHHHHHH
Q psy7366         421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSD-----------REVRTLSGGNKRKLSTA  489 (566)
Q Consensus       421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGqkqrv~la  489 (566)
                      ++|+||++.+|+ .||+||+.++.. ....    .+.+.++++.+++.+..+           +++.+|||||||||+||
T Consensus        78 i~~v~q~~~l~~-~tv~enl~~~~~-~~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lA  151 (243)
T 1mv5_A           78 IGFVSQDSAIMA-GTIRENLTYGLE-GDYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIA  151 (243)
T ss_dssp             CCEECCSSCCCC-EEHHHHTTSCTT-SCSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHH
T ss_pred             EEEEcCCCcccc-ccHHHHHhhhcc-CCCC----HHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHH
Confidence            999999998887 499999976421 1111    234677888888866544           45679999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         490 IALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       490 ~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      |||+.+|++|||||||+|||+.++..+++.|+++. +|+|||++|||++++. .|||+++|++|++++.|+++++
T Consensus       152 ral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~  224 (243)
T 1mv5_A          152 RAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLSTIV-DADKIYFIEKGQITGSGKHNEL  224 (243)
T ss_dssp             HHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHHHHH-HCSEEEEEETTEECCCSCHHHH
T ss_pred             HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChHHHH-hCCEEEEEECCEEEEeCCHHHH
Confidence            99999999999999999999999999999999987 6999999999999886 5999999999999999988765

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=100.00  E-value=1.1e-47  Score=383.52  Aligned_cols=213  Identities=20%  Similarity=0.333  Sum_probs=181.0

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcC
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRS  419 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~  419 (566)
                      .+|+++|+++.|+... .+++|+|+||+|++|++++|+||||||||||+|+|+|+++| +|+|.++|.++.. ....+++
T Consensus        16 ~~l~i~~l~~~y~~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~   93 (260)
T 2ghi_A           16 VNIEFSDVNFSYPKQT-NHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRS   93 (260)
T ss_dssp             CCEEEEEEEECCTTCC-SSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHT
T ss_pred             CeEEEEEEEEEeCCCC-cCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhc
Confidence            3699999999996311 24699999999999999999999999999999999999987 8999999998754 3345677


Q ss_pred             ceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCc-----------cccCcCcCChhHHHHHHH
Q psy7366         420 YIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHY-----------SDREVRTLSGGNKRKLST  488 (566)
Q Consensus       420 ~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGqkqrv~l  488 (566)
                      +|+|+||++.+|+ .||+||+.++..  ...    .+.+.++++.+++.+.           .++++.+|||||||||+|
T Consensus        94 ~i~~v~Q~~~l~~-~tv~enl~~~~~--~~~----~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~l  166 (260)
T 2ghi_A           94 IIGIVPQDTILFN-ETIKYNILYGKL--DAT----DEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAI  166 (260)
T ss_dssp             TEEEECSSCCCCS-EEHHHHHHTTCT--TCC----HHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHH
T ss_pred             cEEEEcCCCcccc-cCHHHHHhccCC--CCC----HHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHH
Confidence            8999999998886 599999987421  111    2335566666665322           346789999999999999


Q ss_pred             HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         489 AIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       489 a~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      ||||+.+|++|||||||+|||+.++..+++.|+++.+ |+|||++|||++++. .||++++|++|++++.|+++++
T Consensus       167 AraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l  240 (260)
T 2ghi_A          167 ARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLSTIS-SAESIILLNKGKIVEKGTHKDL  240 (260)
T ss_dssp             HHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGGST-TCSEEEEEETTEEEEEECHHHH
T ss_pred             HHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHH-hCCEEEEEECCEEEEECCHHHH
Confidence            9999999999999999999999999999999999864 899999999999886 5999999999999999998765

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=100.00  E-value=9e-47  Score=370.22  Aligned_cols=200  Identities=24%  Similarity=0.400  Sum_probs=168.7

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCce
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYI  421 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i  421 (566)
                      +++++|+++.|+.  +++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|            ++
T Consensus         6 ~l~~~~l~~~y~~--~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g------------~i   71 (229)
T 2pze_A            6 EVVMENVTAFWEE--GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------RI   71 (229)
T ss_dssp             EEEEEEEEECSST--TSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS------------CE
T ss_pred             eEEEEEEEEEeCC--CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC------------EE
Confidence            6999999999952  246799999999999999999999999999999999999999999999998            49


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCC-----------ccccCcCcCChhHHHHHHHHH
Q psy7366         422 GYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGH-----------YSDREVRTLSGGNKRKLSTAI  490 (566)
Q Consensus       422 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGqkqrv~la~  490 (566)
                      +|+||++.+++. ||+||+.++..   ...    ....+.++.+++.+           ..++++.+|||||||||+|||
T Consensus        72 ~~v~q~~~~~~~-tv~enl~~~~~---~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAr  143 (229)
T 2pze_A           72 SFCSQFSWIMPG-TIKENIIFGVS---YDE----YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLAR  143 (229)
T ss_dssp             EEECSSCCCCSB-CHHHHHHTTSC---CCH----HHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHH
T ss_pred             EEEecCCcccCC-CHHHHhhccCC---cCh----HHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHH
Confidence            999999988885 99999987421   111    11233444444422           234456899999999999999


Q ss_pred             HHcCCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         491 ALLGNPPLIFLDEPTSGMDPGARRFLWTC-IERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       491 al~~~p~lllLDEPt~gLD~~~~~~l~~~-l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      ||+.+|++|||||||+|||+.++..+++. +.++. +|+|||++|||++++. .||++++|++|++++.|+++++.
T Consensus       144 al~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~  217 (229)
T 2pze_A          144 AVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFSELQ  217 (229)
T ss_dssp             HHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHHHH-HCSEEEEEETTEEEEEECHHHHH
T ss_pred             HHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChHHHH-hCCEEEEEECCEEEEECCHHHHH
Confidence            99999999999999999999999999986 45554 4899999999999986 59999999999999999887753

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=100.00  E-value=2.2e-47  Score=400.30  Aligned_cols=211  Identities=23%  Similarity=0.343  Sum_probs=186.8

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcC
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRS  419 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~  419 (566)
                      ..|+++|+++.|+.  ++..+|+|+||+|++||+++|+||||||||||||+|+|+++ ++|+|.++|+++.. ....+++
T Consensus        18 ~~i~~~~l~~~y~~--~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr   94 (390)
T 3gd7_A           18 GQMTVKDLTAKYTE--GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRK   94 (390)
T ss_dssp             CCEEEEEEEEESSS--SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHH
T ss_pred             CeEEEEEEEEEecC--CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhC
Confidence            46999999999952  25679999999999999999999999999999999999998 89999999999865 3445577


Q ss_pred             ceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCc-----------CChhHHHHHHH
Q psy7366         420 YIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRT-----------LSGGNKRKLST  488 (566)
Q Consensus       420 ~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----------LSgGqkqrv~l  488 (566)
                      .+|||||++.+|+ +||+||+.++.   ..    ..+++.++++.+++.+..++++.+           |||||||||+|
T Consensus        95 ~ig~v~Q~~~lf~-~tv~enl~~~~---~~----~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRval  166 (390)
T 3gd7_A           95 AFGVIPQKVFIFS-GTFRKNLDPNA---AH----SDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCL  166 (390)
T ss_dssp             TEEEESCCCCCCS-EEHHHHHCTTC---CS----CHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHH
T ss_pred             CEEEEcCCcccCc-cCHHHHhhhcc---cc----CHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHH
Confidence            8999999999887 69999996421   11    134577899999999888999988           99999999999


Q ss_pred             HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         489 AIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       489 a~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      ||||+.+|++|||||||++||+..+..+++.|+++. .+.|+|++|||++.+ ..||||++|++|+|++.|+++++
T Consensus       167 ARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e~~-~~aDri~vl~~G~i~~~g~~~el  240 (390)
T 3gd7_A          167 ARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIEAM-LECDQFLVIEENKVRQYDSILEL  240 (390)
T ss_dssp             HHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSGGG-TTCSEEEEEETTEEEEESSHHHH
T ss_pred             HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHHHH-HhCCEEEEEECCEEEEECCHHHH
Confidence            999999999999999999999999999999998763 489999999998755 56999999999999999999876

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=100.00  E-value=2.4e-46  Score=369.02  Aligned_cols=202  Identities=21%  Similarity=0.361  Sum_probs=168.9

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCce
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYI  421 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i  421 (566)
                      +++++|+++.|+.  +++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|            ++
T Consensus         3 ~l~~~~l~~~y~~--~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g------------~i   68 (237)
T 2cbz_A            3 SITVRNATFTWAR--SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG------------SV   68 (237)
T ss_dssp             CEEEEEEEEESCT--TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS------------CE
T ss_pred             eEEEEEEEEEeCC--CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC------------EE
Confidence            5899999999962  135799999999999999999999999999999999999999999999998            39


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHH---HHHHcCCC-----CccccCcCcCChhHHHHHHHHHHHc
Q psy7366         422 GYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNE---SLNKFALG-----HYSDREVRTLSGGNKRKLSTAIALL  493 (566)
Q Consensus       422 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~---~l~~~~l~-----~~~~~~~~~LSgGqkqrv~la~al~  493 (566)
                      +|+||++.+ +.+||+||+.++...   .... ...+.+   +++.+++.     ...++++.+|||||||||+|||||+
T Consensus        69 ~~v~Q~~~~-~~~tv~enl~~~~~~---~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~  143 (237)
T 2cbz_A           69 AYVPQQAWI-QNDSLRENILFGCQL---EEPY-YRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVY  143 (237)
T ss_dssp             EEECSSCCC-CSEEHHHHHHTTSCC---CTTH-HHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHH
T ss_pred             EEEcCCCcC-CCcCHHHHhhCcccc---CHHH-HHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHh
Confidence            999999865 478999999875321   1111 111212   22233332     1357889999999999999999999


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHH---HHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         494 GNPPLIFLDEPTSGMDPGARRFLWTCIE---RAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       494 ~~p~lllLDEPt~gLD~~~~~~l~~~l~---~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      .+|++|||||||+|||+.++..+++.|.   ++. +|+|||++|||++++. .||++++|++|++++.|+++++
T Consensus       144 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~  215 (237)
T 2cbz_A          144 SNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSYLP-QVDVIIVMSGGKISEMGSYQEL  215 (237)
T ss_dssp             HCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTTGG-GSSEEEEEETTEEEEEECHHHH
T ss_pred             cCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHHHH-hCCEEEEEeCCEEEEeCCHHHH
Confidence            9999999999999999999999999985   343 4899999999999875 6999999999999999998765

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=100.00  E-value=7.6e-45  Score=403.46  Aligned_cols=215  Identities=22%  Similarity=0.381  Sum_probs=185.9

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcC
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRS  419 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~  419 (566)
                      ..++++|+++.|+..  ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ....+++
T Consensus       340 ~~i~~~~v~~~y~~~--~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~  417 (582)
T 3b5x_A          340 GEVDVKDVTFTYQGK--EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRR  417 (582)
T ss_pred             CeEEEEEEEEEcCCC--CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhc
Confidence            469999999999621  2579999999999999999999999999999999999999999999999999865 3456778


Q ss_pred             ceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCcc-----------ccCcCcCChhHHHHHHH
Q psy7366         420 YIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYS-----------DREVRTLSGGNKRKLST  488 (566)
Q Consensus       420 ~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGqkqrv~l  488 (566)
                      +++||||++.+|+. |++||+.++.. ...    .++.+.++++.+++.+..           +.+..+||||||||++|
T Consensus       418 ~i~~v~Q~~~l~~~-tv~eni~~~~~-~~~----~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~i  491 (582)
T 3b5x_A          418 HFALVSQNVHLFND-TIANNIAYAAE-GEY----TREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAI  491 (582)
T ss_pred             CeEEEcCCCccccc-cHHHHHhccCC-CCC----CHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHH
Confidence            89999999998875 99999987531 111    134466777777665433           34568999999999999


Q ss_pred             HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         489 AIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       489 a~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      ||||+.+|++|||||||++||+.+++.+.+.|+++.+ |+|+|++|||++.+. .||++++|++|++++.|+++++.
T Consensus       492 Aral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~  566 (582)
T 3b5x_A          492 ARALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLSTIE-QADEILVVDEGEIIERGRHADLL  566 (582)
T ss_pred             HHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHHHHH-hCCEEEEEECCEEEEECCHHHHH
Confidence            9999999999999999999999999999999999854 899999999999986 69999999999999999988763

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=100.00  E-value=1.2e-44  Score=402.01  Aligned_cols=214  Identities=20%  Similarity=0.352  Sum_probs=185.3

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcC
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRS  419 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~  419 (566)
                      ..++++|+++.|+.+  ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ....+++
T Consensus       340 ~~i~~~~v~~~y~~~--~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~  417 (582)
T 3b60_A          340 GDLEFRNVTFTYPGR--EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRN  417 (582)
T ss_dssp             CCEEEEEEEECSSSS--SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHH
T ss_pred             CcEEEEEEEEEcCCC--CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHh
Confidence            469999999999621  2679999999999999999999999999999999999999999999999999865 3455677


Q ss_pred             ceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCC-----------ccccCcCcCChhHHHHHHH
Q psy7366         420 YIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGH-----------YSDREVRTLSGGNKRKLST  488 (566)
Q Consensus       420 ~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGqkqrv~l  488 (566)
                      +++||||++.+|+. |++||+.++.. ...+    ++++.++++.+++.+           ..+++..+||||||||++|
T Consensus       418 ~i~~v~Q~~~l~~~-tv~eni~~~~~-~~~~----~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~i  491 (582)
T 3b60_A          418 QVALVSQNVHLFND-TVANNIAYART-EEYS----REQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAI  491 (582)
T ss_dssp             TEEEECSSCCCCSS-BHHHHHHTTTT-SCCC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHH
T ss_pred             hCeEEccCCcCCCC-CHHHHHhccCC-CCCC----HHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHH
Confidence            89999999999875 99999987531 1111    234566777766643           3345668999999999999


Q ss_pred             HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         489 AIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       489 a~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      ||||+.+|++|||||||++||+.+++.+.+.|+++.+ |+|+|++|||++.+. .||++++|++|++++.|+++++
T Consensus       492 Aral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l  565 (582)
T 3b60_A          492 ARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLSTIE-QADEIVVVEDGIIVERGTHSEL  565 (582)
T ss_dssp             HHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGGTT-TCSEEEEEETTEEEEEECHHHH
T ss_pred             HHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHHHHH-hCCEEEEEECCEEEEecCHHHH
Confidence            9999999999999999999999999999999999865 899999999999886 6999999999999999998876

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=100.00  E-value=1.2e-44  Score=401.58  Aligned_cols=214  Identities=24%  Similarity=0.386  Sum_probs=183.7

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcC
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRS  419 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~  419 (566)
                      ..++++|+++.|+.  +.+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ....+|+
T Consensus       340 ~~i~~~~v~~~y~~--~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~  417 (587)
T 3qf4_A          340 GSVSFENVEFRYFE--NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRG  417 (587)
T ss_dssp             CCEEEEEEEECSSS--SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHH
T ss_pred             CcEEEEEEEEEcCC--CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHh
Confidence            36999999999963  24679999999999999999999999999999999999999999999999999865 4456778


Q ss_pred             ceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHc-----------CCCCccccCcCcCChhHHHHHHH
Q psy7366         420 YIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKF-----------ALGHYSDREVRTLSGGNKRKLST  488 (566)
Q Consensus       420 ~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgGqkqrv~l  488 (566)
                      +++||||++.+|+. |++||+.++..  .....    .+.+.++..           |++...++++.+||||||||++|
T Consensus       418 ~i~~v~Q~~~lf~~-tv~eni~~~~~--~~~~~----~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~l  490 (587)
T 3qf4_A          418 HISAVPQETVLFSG-TIKENLKWGRE--DATDD----EIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSI  490 (587)
T ss_dssp             HEEEECSSCCCCSE-EHHHHHTTTCS--SCCHH----HHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHH
T ss_pred             heEEECCCCcCcCc-cHHHHHhccCC--CCCHH----HHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHH
Confidence            89999999999875 99999976421  11111    222333332           44455678889999999999999


Q ss_pred             HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         489 AIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       489 a~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      ||||+.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+. .||||++|++|+++++|+++++.
T Consensus       491 ARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~-~~d~i~vl~~G~i~~~g~~~el~  565 (587)
T 3qf4_A          491 ARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIPTAL-LADKILVLHEGKVAGFGTHKELL  565 (587)
T ss_dssp             HHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHHHHT-TSSEEEEEETTEEEEEECHHHHH
T ss_pred             HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChHHHH-hCCEEEEEECCEEEEECCHHHHH
Confidence            999999999999999999999999999999999874 5899999999999986 79999999999999999998863

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=100.00  E-value=1.7e-44  Score=400.22  Aligned_cols=214  Identities=23%  Similarity=0.391  Sum_probs=183.2

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcC
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRS  419 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~  419 (566)
                      ..++++|+++.|+.  +.+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|+
T Consensus       338 ~~i~~~~v~~~y~~--~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~  415 (578)
T 4a82_A          338 GRIDIDHVSFQYND--NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRN  415 (578)
T ss_dssp             CCEEEEEEEECSCS--SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHH
T ss_pred             CeEEEEEEEEEcCC--CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhh
Confidence            35999999999963  24579999999999999999999999999999999999999999999999999865 4456778


Q ss_pred             ceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCC-----------CccccCcCcCChhHHHHHHH
Q psy7366         420 YIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALG-----------HYSDREVRTLSGGNKRKLST  488 (566)
Q Consensus       420 ~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGqkqrv~l  488 (566)
                      ++|||||++.+|+. ||+||+.++..  ...    .+.+.+.++..++.           ...+.+..+||||||||++|
T Consensus       416 ~i~~v~Q~~~l~~~-tv~eni~~~~~--~~~----~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~l  488 (578)
T 4a82_A          416 QIGLVQQDNILFSD-TVKENILLGRP--TAT----DEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSI  488 (578)
T ss_dssp             TEEEECSSCCCCSS-BHHHHHGGGCS--SCC----HHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHH
T ss_pred             heEEEeCCCccCcc-cHHHHHhcCCC--CCC----HHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHH
Confidence            89999999999876 99999986521  111    12344555555442           23345667999999999999


Q ss_pred             HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         489 AIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       489 a~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      ||||+.+|++|||||||++||+.++..+.+.++++. +++|+|++|||++.+.. |||+++|++|+++++|+++++.
T Consensus       489 Aral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~el~  563 (578)
T 4a82_A          489 ARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLSTITH-ADKIVVIENGHIVETGTHRELI  563 (578)
T ss_dssp             HHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGGTTT-CSEEEEEETTEEEEEECHHHHH
T ss_pred             HHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHH
Confidence            999999999999999999999999999999998874 47999999999999865 9999999999999999998763

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=100.00  E-value=1.4e-44  Score=402.06  Aligned_cols=212  Identities=24%  Similarity=0.388  Sum_probs=182.1

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCc
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSY  420 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~  420 (566)
                      .++++|+++.|+.   ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ....+|++
T Consensus       354 ~i~~~~v~~~y~~---~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~  430 (598)
T 3qf4_B          354 EIEFKNVWFSYDK---KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSS  430 (598)
T ss_dssp             CEEEEEEECCSSS---SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHH
T ss_pred             eEEEEEEEEECCC---CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhc
Confidence            5999999999963   4679999999999999999999999999999999999999999999999999865 45567888


Q ss_pred             eEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCcc-----------ccCcCcCChhHHHHHHHH
Q psy7366         421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYS-----------DREVRTLSGGNKRKLSTA  489 (566)
Q Consensus       421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGqkqrv~la  489 (566)
                      ++||||++.+|+. |++||+.++..  ....    +.+.++++..++.+..           .....+||||||||++||
T Consensus       431 i~~v~Q~~~lf~~-tv~eni~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iA  503 (598)
T 3qf4_B          431 IGIVLQDTILFST-TVKENLKYGNP--GATD----EEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAIT  503 (598)
T ss_dssp             EEEECTTCCCCSS-BHHHHHHSSST--TCCT----THHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHH
T ss_pred             eEEEeCCCccccc-cHHHHHhcCCC--CCCH----HHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHH
Confidence            9999999998865 99999986421  1112    2234455555543333           334479999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         490 IALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       490 ~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      |||+.+|++|||||||++||+.+...+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus       504 ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~  577 (598)
T 3qf4_B          504 RAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNTIKN-ADLIIVLRDGEIVEMGKHDELI  577 (598)
T ss_dssp             HHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTHHHH-CSEEEEECSSSEEECSCHHHHH
T ss_pred             HHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHH
Confidence            99999999999999999999999999999999985 58999999999999876 9999999999999999998763

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=100.00  E-value=6.6e-44  Score=360.91  Aligned_cols=194  Identities=23%  Similarity=0.343  Sum_probs=153.3

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCce
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYI  421 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i  421 (566)
                      .++++|+++.+      +.+|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|            ++
T Consensus        40 ~l~~~~l~~~~------~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g------------~i  101 (290)
T 2bbs_A           40 SLSFSNFSLLG------TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------RI  101 (290)
T ss_dssp             ----------C------CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS------------CE
T ss_pred             eEEEEEEEEcC------ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC------------EE
Confidence            58999999753      4699999999999999999999999999999999999999999999988            49


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCC-----------ccccCcCcCChhHHHHHHHHH
Q psy7366         422 GYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGH-----------YSDREVRTLSGGNKRKLSTAI  490 (566)
Q Consensus       422 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGqkqrv~la~  490 (566)
                      +|+||++.+++. ||+||+. ..   ....    ....+.++.+++.+           ..++++.+|||||||||+|||
T Consensus       102 ~~v~Q~~~l~~~-tv~enl~-~~---~~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAr  172 (290)
T 2bbs_A          102 SFCSQNSWIMPG-TIKENII-GV---SYDE----YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLAR  172 (290)
T ss_dssp             EEECSSCCCCSS-BHHHHHH-TT---CCCH----HHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHH
T ss_pred             EEEeCCCccCcc-cHHHHhh-Cc---ccch----HHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHH
Confidence            999999988875 9999997 32   1111    11233444444432           123456899999999999999


Q ss_pred             HHcCCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         491 ALLGNPPLIFLDEPTSGMDPGARRFLWTCI-ERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       491 al~~~p~lllLDEPt~gLD~~~~~~l~~~l-~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      ||+.+|++|||||||+|||+.++..+++.+ +++. +|+|||++|||++++. .||++++|++|++++.|+++++
T Consensus       173 aL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~~~~-~~d~i~~l~~G~i~~~g~~~~l  245 (290)
T 2bbs_A          173 AVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFSEL  245 (290)
T ss_dssp             HHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHHHH-HSSEEEEEETTEEEEEECHHHH
T ss_pred             HHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHHHHH-cCCEEEEEECCeEEEeCCHHHH
Confidence            999999999999999999999999999864 4553 4899999999999886 5999999999999999998765

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=100.00  E-value=1.4e-40  Score=398.32  Aligned_cols=214  Identities=22%  Similarity=0.363  Sum_probs=185.1

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCc
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSY  420 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~  420 (566)
                      .++++|++++|+..+ ++++|+|+||+|++|+.++|+||+|||||||+++|.|+++|++|+|.++|.++.. ....+|++
T Consensus       415 ~I~~~nvsF~Y~~~~-~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~  493 (1321)
T 4f4c_A          415 DITVENVHFTYPSRP-DVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKN  493 (1321)
T ss_dssp             CEEEEEEEECCSSST-TSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred             cEEEEEeeeeCCCCC-CCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhc
Confidence            599999999997432 4679999999999999999999999999999999999999999999999999976 56778889


Q ss_pred             eEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCC-----------CccccCcCcCChhHHHHHHHH
Q psy7366         421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALG-----------HYSDREVRTLSGGNKRKLSTA  489 (566)
Q Consensus       421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGqkqrv~la  489 (566)
                      ||||+|+|.+|+. |++|||.++..  ...    ++.+.++++..++.           ........+||||||||++||
T Consensus       494 i~~v~Q~~~Lf~~-TI~eNI~~g~~--~~~----~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiA  566 (1321)
T 4f4c_A          494 VAVVSQEPALFNC-TIEENISLGKE--GIT----REEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIA  566 (1321)
T ss_dssp             EEEECSSCCCCSE-EHHHHHHTTCT--TCC----HHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHH
T ss_pred             ccccCCcceeeCC-chhHHHhhhcc--cch----HHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHH
Confidence            9999999999876 99999987531  111    23455555555442           223445568999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         490 IALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       490 ~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      ||++++|+|||||||||+||+++...+.+.|.++. +|+|+|+|||++..+.. ||+|++|++|+|++.|+.++|.
T Consensus       567 RAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~iiiaHrls~i~~-aD~Iivl~~G~ive~Gth~eL~  640 (1321)
T 4f4c_A          567 RALVRNPKILLLDEATSALDAESEGIVQQALDKAA-KGRTTIIIAHRLSTIRN-ADLIISCKNGQVVEVGDHRALM  640 (1321)
T ss_dssp             HHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH-TTSEEEEECSCTTTTTT-CSEEEEEETTEEEEEECHHHHH
T ss_pred             HHHccCCCEEEEecccccCCHHHHHHHHHHHHHHh-CCCEEEEEcccHHHHHh-CCEEEEeeCCeeeccCCHHHHH
Confidence            99999999999999999999999999999998875 48999999999998864 9999999999999999999874

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=100.00  E-value=1.8e-40  Score=396.66  Aligned_cols=217  Identities=24%  Similarity=0.376  Sum_probs=181.9

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCc
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSY  420 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~  420 (566)
                      .++++|++++|+.. .+.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|++
T Consensus       387 ~i~~~~v~~~y~~~-~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~  465 (1284)
T 3g5u_A          387 NLEFKNIHFSYPSR-KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREI  465 (1284)
T ss_dssp             CEEEEEEEECCSST-TSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHH
T ss_pred             eEEEEEEEEEcCCC-CCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhh
Confidence            59999999999732 13579999999999999999999999999999999999999999999999999865 45667888


Q ss_pred             eEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHH-----HHHHHHc--CCCCccccCcCcCChhHHHHHHHHHHHc
Q psy7366         421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIV-----NESLNKF--ALGHYSDREVRTLSGGNKRKLSTAIALL  493 (566)
Q Consensus       421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LSgGqkqrv~la~al~  493 (566)
                      ||||||++.+|+. ||+||+.++..  .....+..+.+     .+.++.+  |++.....+..+||||||||++|||||+
T Consensus       466 i~~v~Q~~~l~~~-ti~eNi~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~  542 (1284)
T 3g5u_A          466 IGVVSQEPVLFAT-TIAENIRYGRE--DVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALV  542 (1284)
T ss_dssp             EEEECSSCCCCSS-CHHHHHHHHCS--SCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHH
T ss_pred             eEEEcCCCccCCc-cHHHHHhcCCC--CCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHh
Confidence            9999999999876 99999988632  11222211111     1223332  2233345667799999999999999999


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         494 GNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       494 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      .+|+||||||||++||+.+...+.+.++++. +|+|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus       543 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~i~~-~d~i~vl~~G~i~~~g~~~~l  611 (1284)
T 3g5u_A          543 RNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRLSTVRN-ADVIAGFDGGVIVEQGNHDEL  611 (1284)
T ss_dssp             HCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCHHHHTT-CSEEEECSSSCCCCEECHHHH
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHH
Confidence            9999999999999999999999999998764 58999999999999976 999999999999999998876

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=100.00  E-value=3.6e-39  Score=356.97  Aligned_cols=195  Identities=25%  Similarity=0.349  Sum_probs=163.9

Q ss_pred             eeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEE---------EEcCccCCCch--
Q psy7366         346 KRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA---------YVMNHSIRDSM--  414 (566)
Q Consensus       346 ~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i---------~~~g~~~~~~~--  414 (566)
                      +|+++.|+.   ...+|+++| +|++||++||+||||||||||+|+|+|+++|++|++         .++|.++....  
T Consensus        95 ~~ls~~yg~---~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~  170 (607)
T 3bk7_A           95 EDCVHRYGV---NAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFER  170 (607)
T ss_dssp             GSEEEECST---TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHH
T ss_pred             CCeEEEECC---CCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhh
Confidence            889999962   225899999 999999999999999999999999999999999995         34555442211  


Q ss_pred             -HHhcCceEEEecCCCCCC---CCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHH
Q psy7366         415 -DLVRSYIGYCPQFDALND---RLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAI  490 (566)
Q Consensus       415 -~~~~~~i~~v~q~~~l~~---~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~  490 (566)
                       ...+..+++++|+...++   ..|+.||+...    ..     .+++.++++.++|.+..++++.+|||||||||+|||
T Consensus       171 ~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~----~~-----~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAr  241 (607)
T 3bk7_A          171 LKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV----DE-----VGKFEEVVKELELENVLDRELHQLSGGELQRVAIAA  241 (607)
T ss_dssp             HHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHT----CC-----SSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHH
T ss_pred             hhhhhcceEEeechhhhchhhccccHHHHhhhh----HH-----HHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHH
Confidence             112356889998743222   23899988531    11     134678999999999999999999999999999999


Q ss_pred             HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECC
Q psy7366         491 ALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNG  553 (566)
Q Consensus       491 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G  553 (566)
                      ||+.+|++|||||||+|||+.++..++++|++++++|.|||+||||++++..+|||+++|+++
T Consensus       242 aL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~  304 (607)
T 3bk7_A          242 ALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE  304 (607)
T ss_dssp             HHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred             HHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence            999999999999999999999999999999999878999999999999999999999999865

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=100.00  E-value=3.3e-39  Score=353.61  Aligned_cols=198  Identities=23%  Similarity=0.324  Sum_probs=163.3

Q ss_pred             EEE-eeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEE---------EEcCccCCC
Q psy7366         343 LVV-KRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA---------YVMNHSIRD  412 (566)
Q Consensus       343 l~~-~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i---------~~~g~~~~~  412 (566)
                      .++ +|+++.|+.   ...+++++| +|++||++||+||||||||||+|+|+|+++|++|++         .++|.++..
T Consensus        21 ~~~~~~ls~~yg~---~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~   96 (538)
T 1yqt_A           21 EQLEEDCVHRYGV---NAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQN   96 (538)
T ss_dssp             ---CCCEEEECST---TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHH
T ss_pred             hhHhcCcEEEECC---ccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHH
Confidence            344 589999962   225899999 999999999999999999999999999999999995         345544321


Q ss_pred             c-hH--HhcCceEEEecCCCCCCC---CCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHH
Q psy7366         413 S-MD--LVRSYIGYCPQFDALNDR---LTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKL  486 (566)
Q Consensus       413 ~-~~--~~~~~i~~v~q~~~l~~~---~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv  486 (566)
                      . ..  ..+..+++++|+..+++.   .|+.+++...    ..     .+++.++++.+++....++++.+|||||||||
T Consensus        97 ~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~----~~-----~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv  167 (538)
T 1yqt_A           97 YFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKA----DE-----TGKLEEVVKALELENVLEREIQHLSGGELQRV  167 (538)
T ss_dssp             HHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHH----CS-----SSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHH
T ss_pred             HHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhh----hH-----HHHHHHHHHHcCCChhhhCChhhCCHHHHHHH
Confidence            1 01  123468999997543221   3888887531    11     13467899999999889999999999999999


Q ss_pred             HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECC
Q psy7366         487 STAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNG  553 (566)
Q Consensus       487 ~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G  553 (566)
                      +|||||+.+|++|||||||++||+.++..++++|++++++|+|||+||||++++..+|||+++|++|
T Consensus       168 ~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~  234 (538)
T 1yqt_A          168 AIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE  234 (538)
T ss_dssp             HHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred             HHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence            9999999999999999999999999999999999999888999999999999999999999999864

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=100.00  E-value=4e-38  Score=325.75  Aligned_cols=180  Identities=26%  Similarity=0.323  Sum_probs=160.8

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCccc------ccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTID------KNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIV   71 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~~------~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~   71 (566)
                      .||||++|+++|++.|++   .+.+.+....      ..+++||||||++.+++.+||+||+.|+....+.+..+..+++
T Consensus        65 aGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v  144 (366)
T 3tui_C           65 AGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV  144 (366)
T ss_dssp             SSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             chHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHH
Confidence            599999999999998765   2333221111      1135799999999999999999999999888888888888999


Q ss_pred             HHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEecCCh
Q psy7366          72 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS-EGRCVILTSHNM  150 (566)
Q Consensus        72 ~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviiisH~~  150 (566)
                      .++|+.+||.+..++++.+|||||||||+|||||+.+|++|||||||++|||.++..++++|+++++ .|.|||+||||+
T Consensus       145 ~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl  224 (366)
T 3tui_C          145 TELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEM  224 (366)
T ss_dssp             HHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCH
T ss_pred             HHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence            9999999999999999999999999999999999999999999999999999999999999999965 499999999999


Q ss_pred             hHHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy7366         151 EECEALCTKLTIMVNGQFTCLGSATHLKSK  180 (566)
Q Consensus       151 ~~~~~~~d~i~vl~~G~i~~~g~~~~~~~~  180 (566)
                      +++..+||||++|++|++++.|+++++...
T Consensus       225 ~~~~~~aDrv~vl~~G~iv~~g~~~ev~~~  254 (366)
T 3tui_C          225 DVVKRICDCVAVISNGELIEQDTVSEVFSH  254 (366)
T ss_dssp             HHHHHHCSEEEEEETTEEEECCBHHHHHSS
T ss_pred             HHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence            999999999999999999999999998653

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=100.00  E-value=4.6e-38  Score=327.30  Aligned_cols=180  Identities=24%  Similarity=0.338  Sum_probs=161.9

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcc-cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI-DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLN   76 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~-~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~   76 (566)
                      +||||++|+|+|++.|++   .+.+..... ....+.||||||++.+|+.+||+||+.|+....+.+..+.++++.++++
T Consensus        40 sGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~  119 (381)
T 3rlf_A           40 CGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAE  119 (381)
T ss_dssp             SSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            599999999999998765   233322111 1223579999999999999999999999988888888888999999999


Q ss_pred             HcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEecCChhHHHh
Q psy7366          77 KFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEA  155 (566)
Q Consensus        77 ~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiisH~~~~~~~  155 (566)
                      .+||+...++++.+|||||||||+|||||+.+|+||||||||++||+..+.++++.|++++++ |.|+|+||||++++..
T Consensus       120 ~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~  199 (381)
T 3rlf_A          120 VLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMT  199 (381)
T ss_dssp             HTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHH
T ss_pred             HcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999655 9999999999999999


Q ss_pred             hcCEEEEEeCCEEEEecChhHHHhh
Q psy7366         156 LCTKLTIMVNGQFTCLGSATHLKSK  180 (566)
Q Consensus       156 ~~d~i~vl~~G~i~~~g~~~~~~~~  180 (566)
                      +||||++|++|+++..|+++++...
T Consensus       200 ~aDri~vl~~G~i~~~g~~~~l~~~  224 (381)
T 3rlf_A          200 LADKIVVLDAGRVAQVGKPLELYHY  224 (381)
T ss_dssp             HCSEEEEEETTEEEEEECHHHHHHC
T ss_pred             hCCEEEEEECCEEEEEeCHHHHHhC
Confidence            9999999999999999999998754

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=100.00  E-value=1.1e-37  Score=322.43  Aligned_cols=180  Identities=22%  Similarity=0.288  Sum_probs=159.4

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCC-----cccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNP-----TIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVN   72 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~-----~~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~   72 (566)
                      +||||++|+|+|++.|++   .+.+...     ......+.||||||++.+|+.+||+||+.|+....+.+..+..++++
T Consensus        41 sGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~  120 (359)
T 3fvq_A           41 CGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIE  120 (359)
T ss_dssp             SSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHH
T ss_pred             chHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHH
Confidence            599999999999998765   2333221     11123457999999999999999999999987766777778888999


Q ss_pred             HHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHH-HhCCCEEEEecCChh
Q psy7366          73 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERA-VSEGRCVILTSHNME  151 (566)
Q Consensus        73 ~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l-~~~g~tviiisH~~~  151 (566)
                      ++++.+||+...++++.+|||||||||+|||||+.+|++|||||||++||+..+.++++.|+++ ++.|.|||+||||++
T Consensus       121 ~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~  200 (359)
T 3fvq_A          121 AMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE  200 (359)
T ss_dssp             HHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH
T ss_pred             HHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            9999999999999999999999999999999999999999999999999999999999988776 456999999999999


Q ss_pred             HHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy7366         152 ECEALCTKLTIMVNGQFTCLGSATHLKSK  180 (566)
Q Consensus       152 ~~~~~~d~i~vl~~G~i~~~g~~~~~~~~  180 (566)
                      ++..+||||++|++|+++..|+++++...
T Consensus       201 ea~~~aDri~vl~~G~i~~~g~~~el~~~  229 (359)
T 3fvq_A          201 EALQYADRIAVMKQGRILQTASPHELYRQ  229 (359)
T ss_dssp             HHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred             HHHHHCCEEEEEECCEEEEEeCHHHHHhC
Confidence            99999999999999999999999998754

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=100.00  E-value=2.8e-37  Score=352.85  Aligned_cols=198  Identities=21%  Similarity=0.295  Sum_probs=169.4

Q ss_pred             CCeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcC
Q psy7366         340 GDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRS  419 (566)
Q Consensus       340 ~~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~  419 (566)
                      +..+...|+++.|+    ++.+|+|+||+|++|++++|+||||||||||+|+|+|      |+|  +|.+...     ..
T Consensus       433 ~~~L~~~~ls~~yg----~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~-----~~  495 (986)
T 2iw3_A          433 GEDLCNCEFSLAYG----AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE-----EC  495 (986)
T ss_dssp             SCEEEEEEEEEEET----TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT-----TS
T ss_pred             cceeEEeeEEEEEC----CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc-----ce
Confidence            34577779999996    5679999999999999999999999999999999995      443  3433211     12


Q ss_pred             ceEEEecCC-CCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCC-CccccCcCcCChhHHHHHHHHHHHcCCCC
Q psy7366         420 YIGYCPQFD-ALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALG-HYSDREVRTLSGGNKRKLSTAIALLGNPP  497 (566)
Q Consensus       420 ~i~~v~q~~-~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqrv~la~al~~~p~  497 (566)
                      +++|++|++ .+++.+|+.||+.+  ...+.     .+++.++++.+|+. ...++++.+|||||||||+|||||+.+|+
T Consensus       496 ~~~~v~q~~~~~~~~ltv~e~l~~--~~~~~-----~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~  568 (986)
T 2iw3_A          496 RTVYVEHDIDGTHSDTSVLDFVFE--SGVGT-----KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNAD  568 (986)
T ss_dssp             CEEETTCCCCCCCTTSBHHHHHHT--TCSSC-----HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCS
T ss_pred             eEEEEcccccccccCCcHHHHHHH--hhcCH-----HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence            478999985 67888999999865  21121     45678999999995 67899999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEE-EecCcccc
Q psy7366         498 LIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFT-CLGSATHL  564 (566)
Q Consensus       498 lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~-~~g~~~~l  564 (566)
                      +|||||||+|||+.++..++++|++   .|.|||++|||++++..+||++++|++|+++ +.|+++++
T Consensus       569 lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~  633 (986)
T 2iw3_A          569 ILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEF  633 (986)
T ss_dssp             EEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHH
T ss_pred             EEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHH
Confidence            9999999999999999999999987   5899999999999999999999999999997 57877654

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=100.00  E-value=1.6e-37  Score=311.73  Aligned_cols=179  Identities=20%  Similarity=0.270  Sum_probs=157.1

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCc--c---cccccceeEEcCCCC-CCCCCCHHHHHHHHHHhcCCChhhHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPT--I---DKNLSYIGYCPQFDA-LNDRLTPREHLEFYSRVRNVPSVLLNTIV   71 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~--~---~~~~~~ig~v~Q~~~-l~~~~tv~e~l~~~~~~~~~~~~~~~~~~   71 (566)
                      +||||++|+++|++.|.+   .+.+.+..  .   ....+.||||||+|. .+..+||+||+.|+....+.+..+..+++
T Consensus        45 sGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~  124 (275)
T 3gfo_A           45 VGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRV  124 (275)
T ss_dssp             SSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHH
Confidence            599999999999998765   23332221  0   112357999999984 34478999999998887778888888899


Q ss_pred             HHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEecCCh
Q psy7366          72 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAV-SEGRCVILTSHNM  150 (566)
Q Consensus        72 ~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~-~~g~tviiisH~~  150 (566)
                      +++++.+||+...++++.+|||||||||+||+||+.+|++|||||||++||+.++..++++|++++ ++|+|||+||||+
T Consensus       125 ~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl  204 (275)
T 3gfo_A          125 DNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDI  204 (275)
T ss_dssp             HHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCC
T ss_pred             HHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCH
Confidence            999999999999999999999999999999999999999999999999999999999999999997 5699999999999


Q ss_pred             hHHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy7366         151 EECEALCTKLTIMVNGQFTCLGSATHLKS  179 (566)
Q Consensus       151 ~~~~~~~d~i~vl~~G~i~~~g~~~~~~~  179 (566)
                      +++..+||||++|++|+++..|+++++..
T Consensus       205 ~~~~~~~drv~~l~~G~i~~~g~~~~~~~  233 (275)
T 3gfo_A          205 DIVPLYCDNVFVMKEGRVILQGNPKEVFA  233 (275)
T ss_dssp             SSGGGGCSEEEEEETTEEEEEECHHHHTH
T ss_pred             HHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence            99999999999999999999999998754

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=100.00  E-value=5e-37  Score=317.64  Aligned_cols=180  Identities=26%  Similarity=0.363  Sum_probs=159.5

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcc-cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI-DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLN   76 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~-~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~   76 (566)
                      +||||++|+|+|++.|++   .+.+..... ....+.||||||++.+|+.+||+||+.|+....+.+..+.++++.++++
T Consensus        52 sGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~  131 (355)
T 1z47_A           52 SGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLR  131 (355)
T ss_dssp             SSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            599999999999998765   233322111 1224579999999999999999999999877777777777889999999


Q ss_pred             HcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEecCChhHHHh
Q psy7366          77 KFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEA  155 (566)
Q Consensus        77 ~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiisH~~~~~~~  155 (566)
                      .+||+...++++.+|||||||||+|||||+.+|++|||||||++||+..++++++.|+++.++ |.|||++|||++++..
T Consensus       132 ~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~  211 (355)
T 1z47_A          132 FMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALE  211 (355)
T ss_dssp             HTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHH
T ss_pred             HcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999655 9999999999999999


Q ss_pred             hcCEEEEEeCCEEEEecChhHHHhh
Q psy7366         156 LCTKLTIMVNGQFTCLGSATHLKSK  180 (566)
Q Consensus       156 ~~d~i~vl~~G~i~~~g~~~~~~~~  180 (566)
                      +||||++|++|+++..|+++++...
T Consensus       212 ~adri~vl~~G~i~~~g~~~~l~~~  236 (355)
T 1z47_A          212 VADRVLVLHEGNVEQFGTPEEVYEK  236 (355)
T ss_dssp             HCSEEEEEETTEEEEEECHHHHHHS
T ss_pred             hCCEEEEEECCEEEEEcCHHHHHhC
Confidence            9999999999999999999998653

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=100.00  E-value=7.4e-37  Score=305.15  Aligned_cols=179  Identities=22%  Similarity=0.275  Sum_probs=155.6

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCc---c--cccccceeEEcCCCCCCCCCCHHHHHHHHH-HhcCCChhhHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPT---I--DKNLSYIGYCPQFDALNDRLTPREHLEFYS-RVRNVPSVLLNTIV   71 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~---~--~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~-~~~~~~~~~~~~~~   71 (566)
                      .||||++|+++|++.|++   .+.+.+..   .  ....+.||||||++.+++.+||+||+.++. ...+.+..+..+++
T Consensus        61 sGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~  140 (263)
T 2olj_A           61 SGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKA  140 (263)
T ss_dssp             SSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHH
T ss_pred             CcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            599999999999998765   23332211   0  112346999999999999999999999864 44555555667789


Q ss_pred             HHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChh
Q psy7366          72 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME  151 (566)
Q Consensus        72 ~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~  151 (566)
                      .++++.+||....++++.+|||||||||+||+||+.+|++|||||||++||+.++++++++|++++++|+|||++|||++
T Consensus       141 ~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~  220 (263)
T 2olj_A          141 MELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMG  220 (263)
T ss_dssp             HHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             HHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH
Confidence            99999999998899999999999999999999999999999999999999999999999999999777999999999999


Q ss_pred             HHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy7366         152 ECEALCTKLTIMVNGQFTCLGSATHLKS  179 (566)
Q Consensus       152 ~~~~~~d~i~vl~~G~i~~~g~~~~~~~  179 (566)
                      ++..+||||++|++|+++..|+++++..
T Consensus       221 ~~~~~~d~v~~l~~G~i~~~g~~~~~~~  248 (263)
T 2olj_A          221 FAREVGDRVLFMDGGYIIEEGKPEDLFD  248 (263)
T ss_dssp             HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            9999999999999999999999988754

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=100.00  E-value=1.4e-37  Score=350.68  Aligned_cols=203  Identities=20%  Similarity=0.287  Sum_probs=141.6

Q ss_pred             CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHH---------------------HHHHCCCCCC-------ccEEEEcCcc
Q psy7366         358 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTF---------------------KMLTGAIKPT-------SGNAYVMNHS  409 (566)
Q Consensus       358 ~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl---------------------~~i~G~~~~~-------~G~i~~~g~~  409 (566)
                      ...+|+||||+|++||++||+||||||||||+                     +++.|+.+|+       .|.|.+++.+
T Consensus        30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~  109 (670)
T 3ux8_A           30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT  109 (670)
T ss_dssp             CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred             CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence            35689999999999999999999999999998                     8999999998       4556666654


Q ss_pred             CCCchHHhcCceEEEecCC-------------------CCCCCCCHHHHHHHHHHhcCC--CchHHH------HHHHHHH
Q psy7366         410 IRDSMDLVRSYIGYCPQFD-------------------ALNDRLTPREHLEFYSRVRNV--PSVLLN------TIVNESL  462 (566)
Q Consensus       410 ~~~~~~~~~~~i~~v~q~~-------------------~l~~~~tv~e~l~~~~~~~~~--~~~~~~------~~~~~~l  462 (566)
                      ....   .+..++|++|.+                   ..++.+|+.||+.++......  ......      .....++
T Consensus       110 ~~~~---~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  186 (670)
T 3ux8_A          110 TSRN---PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFL  186 (670)
T ss_dssp             --------CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHH
T ss_pred             hhcc---chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHH
Confidence            4221   123344444432                   234678999999774322110  000000      0112458


Q ss_pred             HHcCCCCc-cccCcCcCChhHHHHHHHHHHHcCCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHH
Q psy7366         463 NKFALGHY-SDREVRTLSGGNKRKLSTAIALLGNPP--LIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEE  539 (566)
Q Consensus       463 ~~~~l~~~-~~~~~~~LSgGqkqrv~la~al~~~p~--lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~  539 (566)
                      +.+||.+. .++++.+|||||||||+|||||+.+|+  +|||||||+|||+.++..++++|++++++|.|||+||||+++
T Consensus       187 ~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~  266 (670)
T 3ux8_A          187 QNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDT  266 (670)
T ss_dssp             HHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHH
T ss_pred             HHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence            88999764 689999999999999999999999998  999999999999999999999999998889999999999998


Q ss_pred             HHhhCCEEEEE------ECCEEEEecCcccc
Q psy7366         540 CEALCTKLTIM------VNGQFTCLGSATHL  564 (566)
Q Consensus       540 ~~~~~drv~~l------~~G~i~~~g~~~~l  564 (566)
                      +. .|||+++|      ++|++++.|+++++
T Consensus       267 ~~-~~d~ii~l~~g~~~~~G~i~~~g~~~~~  296 (670)
T 3ux8_A          267 ML-AADYLIDIGPGAGIHGGEVVAAGTPEEV  296 (670)
T ss_dssp             HH-HCSEEEEECSSSGGGCCSEEEEECHHHH
T ss_pred             Hh-hCCEEEEecccccccCCEEEEecCHHHH
Confidence            76 59999999      89999999998875

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=100.00  E-value=7.4e-37  Score=305.58  Aligned_cols=179  Identities=20%  Similarity=0.239  Sum_probs=155.4

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcc----------------cccccceeEEcCCCCCCCCCCHHHHHHHHH-Hhc
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI----------------DKNLSYIGYCPQFDALNDRLTPREHLEFYS-RVR   60 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~----------------~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~-~~~   60 (566)
                      .||||++|+++|++.|.+   .+.+.+...                ....+.||||||++.+++.+||+||+.++. ...
T Consensus        43 sGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~  122 (262)
T 1b0u_A           43 SGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL  122 (262)
T ss_dssp             SSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhc
Confidence            599999999999998765   233322110                011346999999999999999999999864 444


Q ss_pred             CCChhhHHHHHHHHHHHcCCCcc-cccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy7366          61 NVPSVLLNTIVNESLNKFALGHY-SDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE  139 (566)
Q Consensus        61 ~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~  139 (566)
                      +.+..+..+++.++++.+||... .++++.+|||||||||+||+||+.+|+||||||||++||+.+++.+.++|++++++
T Consensus       123 ~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~  202 (262)
T 1b0u_A          123 GLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE  202 (262)
T ss_dssp             CCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC
Confidence            55555567789999999999988 89999999999999999999999999999999999999999999999999999777


Q ss_pred             CCEEEEecCChhHHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy7366         140 GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  179 (566)
Q Consensus       140 g~tviiisH~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~  179 (566)
                      |+|||++|||++++..+||||++|++|+++..|+++++..
T Consensus       203 g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  242 (262)
T 1b0u_A          203 GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFG  242 (262)
T ss_dssp             TCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence            9999999999999999999999999999999999988754

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=100.00  E-value=7.9e-37  Score=317.20  Aligned_cols=180  Identities=22%  Similarity=0.302  Sum_probs=159.4

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcc-cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI-DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLN   76 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~-~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~   76 (566)
                      +||||++|+|+|++.|++   .+.+..... ....+.||||||++.+|+.+||+||+.|+....+.+..+..++++++++
T Consensus        40 sGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~  119 (362)
T 2it1_A           40 SGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAK  119 (362)
T ss_dssp             SSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            599999999999998765   233322111 1223579999999999999999999999877767777777889999999


Q ss_pred             HcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEecCChhHHHh
Q psy7366          77 KFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEA  155 (566)
Q Consensus        77 ~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiisH~~~~~~~  155 (566)
                      .+||++..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|+++.++ |.|+|++|||++++..
T Consensus       120 ~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~  199 (362)
T 2it1_A          120 MLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALA  199 (362)
T ss_dssp             HTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHH
T ss_pred             HcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999654 9999999999999999


Q ss_pred             hcCEEEEEeCCEEEEecChhHHHhh
Q psy7366         156 LCTKLTIMVNGQFTCLGSATHLKSK  180 (566)
Q Consensus       156 ~~d~i~vl~~G~i~~~g~~~~~~~~  180 (566)
                      +||||++|++|+++..|+++++...
T Consensus       200 ~adri~vl~~G~i~~~g~~~~~~~~  224 (362)
T 2it1_A          200 MADRIAVIREGEILQVGTPDEVYYK  224 (362)
T ss_dssp             HCSEEEEEETTEEEEEECHHHHHHS
T ss_pred             hCCEEEEEECCEEEEEcCHHHHHhC
Confidence            9999999999999999999998653

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=100.00  E-value=1e-36  Score=317.99  Aligned_cols=180  Identities=22%  Similarity=0.320  Sum_probs=159.7

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcc-------cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI-------DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTI   70 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~-------~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~   70 (566)
                      +||||++|+|+|++.|++   .+.+.....       ....+.||||||++.+|+.+||+||+.|+....+.+..+..++
T Consensus        40 sGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~  119 (372)
T 1g29_1           40 CGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQR  119 (372)
T ss_dssp             SSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             cHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHH
Confidence            599999999999998765   233322111       1223579999999999999999999999887777777777889


Q ss_pred             HHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEecCC
Q psy7366          71 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHN  149 (566)
Q Consensus        71 ~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiisH~  149 (566)
                      ++++++.+||+...++++.+|||||||||+|||||+.+|++|||||||++||+..++.+.+.|+++.++ |.|||++|||
T Consensus       120 v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd  199 (372)
T 1g29_1          120 VREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHD  199 (372)
T ss_dssp             HHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESC
T ss_pred             HHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCC
Confidence            999999999999999999999999999999999999999999999999999999999999999998654 9999999999


Q ss_pred             hhHHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy7366         150 MEECEALCTKLTIMVNGQFTCLGSATHLKSK  180 (566)
Q Consensus       150 ~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~~  180 (566)
                      ++++..+||||++|++|+++..|+++++...
T Consensus       200 ~~~a~~~adri~vl~~G~i~~~g~~~~l~~~  230 (372)
T 1g29_1          200 QVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK  230 (372)
T ss_dssp             HHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred             HHHHHHhCCEEEEEeCCEEEEeCCHHHHHhC
Confidence            9999999999999999999999999998654

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=100.00  E-value=7.5e-37  Score=317.02  Aligned_cols=180  Identities=22%  Similarity=0.314  Sum_probs=157.7

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcc-cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI-DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLN   76 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~-~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~   76 (566)
                      .||||++|+|+|++.|++   .+.+..... ....+.||||||++.+|+.+||+||+.|+....+.+..+.++++.++++
T Consensus        40 sGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~  119 (359)
T 2yyz_A           40 CGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIAR  119 (359)
T ss_dssp             SSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHH
T ss_pred             chHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            599999999999998765   233322111 1223579999999999999999999999876555555566778999999


Q ss_pred             HcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEecCChhHHHh
Q psy7366          77 KFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEA  155 (566)
Q Consensus        77 ~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiisH~~~~~~~  155 (566)
                      .+||+...++++.+|||||||||+|||||+.+|++|||||||++||+..++++.+.|+++.++ |.|+|++|||++++..
T Consensus       120 ~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~  199 (359)
T 2yyz_A          120 KLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMT  199 (359)
T ss_dssp             HTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHH
T ss_pred             HcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999998654 9999999999999999


Q ss_pred             hcCEEEEEeCCEEEEecChhHHHhh
Q psy7366         156 LCTKLTIMVNGQFTCLGSATHLKSK  180 (566)
Q Consensus       156 ~~d~i~vl~~G~i~~~g~~~~~~~~  180 (566)
                      +||||++|++|+++..|+++++...
T Consensus       200 ~adri~vl~~G~i~~~g~~~~l~~~  224 (359)
T 2yyz_A          200 MASRIAVFNQGKLVQYGTPDEVYDS  224 (359)
T ss_dssp             HCSEEEEEETTEEEEEECHHHHHHS
T ss_pred             hCCEEEEEECCEEEEeCCHHHHHhC
Confidence            9999999999999999999998653

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=100.00  E-value=1.5e-36  Score=301.96  Aligned_cols=179  Identities=32%  Similarity=0.410  Sum_probs=156.2

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcc--cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI--DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL   75 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~--~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l   75 (566)
                      .||||++|+++|++.|.+   .+.+.....  ....+.|||+||++.+++.+||+||+.++....+.+..+..+++.+++
T Consensus        52 sGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l  131 (256)
T 1vpl_A           52 AGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERAT  131 (256)
T ss_dssp             SSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence            599999999999997755   233322111  112356999999999999999999999876655665555667889999


Q ss_pred             HHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHHh
Q psy7366          76 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEA  155 (566)
Q Consensus        76 ~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~  155 (566)
                      +.+||+...++++.+||||||||++||+||+.+|++|||||||++||+.++..++++|++++++|+|||++|||++++..
T Consensus       132 ~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~  211 (256)
T 1vpl_A          132 EIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEF  211 (256)
T ss_dssp             HHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTT
T ss_pred             HHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHH
Confidence            99999988999999999999999999999999999999999999999999999999999998789999999999999999


Q ss_pred             hcCEEEEEeCCEEEEecChhHHHh
Q psy7366         156 LCTKLTIMVNGQFTCLGSATHLKS  179 (566)
Q Consensus       156 ~~d~i~vl~~G~i~~~g~~~~~~~  179 (566)
                      +||||++|++|+++..|+++++..
T Consensus       212 ~~d~v~~l~~G~i~~~g~~~~~~~  235 (256)
T 1vpl_A          212 LCDRIALIHNGTIVETGTVEELKE  235 (256)
T ss_dssp             TCSEEEEEETTEEEEEEEHHHHHH
T ss_pred             HCCEEEEEECCEEEEecCHHHHHH
Confidence            999999999999999999888754

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=100.00  E-value=1.7e-36  Score=296.14  Aligned_cols=172  Identities=22%  Similarity=0.256  Sum_probs=149.3

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcccc-------cccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTIDK-------NLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTI   70 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~~~-------~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~   70 (566)
                      .||||++|+++|++.|.+   .+.+.......       ..++|||+||++.+++.+||+||+.++....+.+..+..++
T Consensus        41 sGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~  120 (224)
T 2pcj_A           41 SGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKER  120 (224)
T ss_dssp             SCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             CCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHH
Confidence            599999999999998765   23332211100       12469999999999999999999998776666655566778


Q ss_pred             HHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCCh
Q psy7366          71 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM  150 (566)
Q Consensus        71 ~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~  150 (566)
                      +.++++.+||.+..++++.+|||||||||+||+||+.+|++|||||||++||+.+++.+.++|++++++|+|||++|||+
T Consensus       121 ~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~  200 (224)
T 2pcj_A          121 GEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHER  200 (224)
T ss_dssp             HHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             HHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999977799999999999


Q ss_pred             hHHHhhcCEEEEEeCCEEEEecC
Q psy7366         151 EECEALCTKLTIMVNGQFTCLGS  173 (566)
Q Consensus       151 ~~~~~~~d~i~vl~~G~i~~~g~  173 (566)
                      +++ .+||+|++|++|+++..|+
T Consensus       201 ~~~-~~~d~v~~l~~G~i~~~g~  222 (224)
T 2pcj_A          201 ELA-ELTHRTLEMKDGKVVGEIT  222 (224)
T ss_dssp             HHH-TTSSEEEEEETTEEEEEEE
T ss_pred             HHH-HhCCEEEEEECCEEEEEee
Confidence            988 7999999999999998775

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=100.00  E-value=9.5e-37  Score=316.35  Aligned_cols=180  Identities=23%  Similarity=0.296  Sum_probs=158.7

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCc------ccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPT------IDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIV   71 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~------~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~   71 (566)
                      +||||++|+|+|++.|++   .+.+....      .....+.||||||++.+|+.+||+||+.|+...++.+..+..+++
T Consensus        42 sGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v  121 (353)
T 1oxx_K           42 AGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV  121 (353)
T ss_dssp             HHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHH
T ss_pred             CcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHH
Confidence            499999999999998765   23332211      112245799999999999999999999998766666767778899


Q ss_pred             HHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEecCCh
Q psy7366          72 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNM  150 (566)
Q Consensus        72 ~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiisH~~  150 (566)
                      .++++.+||+...++++.+|||||||||+|||||+.+|++|||||||++||+..+.++++.|+++.++ |.|||++|||+
T Consensus       122 ~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~  201 (353)
T 1oxx_K          122 EEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDP  201 (353)
T ss_dssp             HHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCH
T ss_pred             HHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999998654 99999999999


Q ss_pred             hHHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy7366         151 EECEALCTKLTIMVNGQFTCLGSATHLKSK  180 (566)
Q Consensus       151 ~~~~~~~d~i~vl~~G~i~~~g~~~~~~~~  180 (566)
                      +++..+||||++|++|+++..|+++++...
T Consensus       202 ~~~~~~adri~vl~~G~i~~~g~~~~l~~~  231 (353)
T 1oxx_K          202 ADIFAIADRVGVLVKGKLVQVGKPEDLYDN  231 (353)
T ss_dssp             HHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred             HHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence            999999999999999999999999998653

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=100.00  E-value=2.1e-36  Score=297.63  Aligned_cols=176  Identities=20%  Similarity=0.257  Sum_probs=148.1

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCccc---c----cccceeEEcCCCCCCCCCCHHHHHHHHHHhc---CCChhhH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTID---K----NLSYIGYCPQFDALNDRLTPREHLEFYSRVR---NVPSVLL   67 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~~---~----~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~   67 (566)
                      +||||++|+++|++.|.+   .+.+......   .    ...+||||||++.+++.+||+||+.++....   ..+..+.
T Consensus        42 sGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~  121 (235)
T 3tif_A           42 SGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER  121 (235)
T ss_dssp             SSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHH
T ss_pred             CcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHH
Confidence            599999999999998765   2333211111   0    1236999999999999999999999876543   3455666


Q ss_pred             HHHHHHHHHHcCCCcc-cccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEE
Q psy7366          68 NTIVNESLNKFALGHY-SDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVIL  145 (566)
Q Consensus        68 ~~~~~~~l~~~gl~~~-~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tvii  145 (566)
                      .+++.++++.+|+... .++++.+|||||||||+||+||+.+|++|||||||++||+.++..+.++|++++++ |+|||+
T Consensus       122 ~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~  201 (235)
T 3tif_A          122 RKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVV  201 (235)
T ss_dssp             HHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEE
T ss_pred             HHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence            7889999999999875 59999999999999999999999999999999999999999999999999999765 999999


Q ss_pred             ecCChhHHHhhcCEEEEEeCCEEEEecChhHH
Q psy7366         146 TSHNMEECEALCTKLTIMVNGQFTCLGSATHL  177 (566)
Q Consensus       146 isH~~~~~~~~~d~i~vl~~G~i~~~g~~~~~  177 (566)
                      ||||++.+ .+||||++|++|+++..++++++
T Consensus       202 vtHd~~~~-~~~d~i~~l~~G~i~~~~~~~~~  232 (235)
T 3tif_A          202 VTHDINVA-RFGERIIYLKDGEVEREEKLRGF  232 (235)
T ss_dssp             ECSCHHHH-TTSSEEEEEETTEEEEEEECC--
T ss_pred             EcCCHHHH-HhCCEEEEEECCEEEEEcChhhh
Confidence            99999854 79999999999999998877654

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=100.00  E-value=1.2e-36  Score=316.98  Aligned_cols=180  Identities=22%  Similarity=0.291  Sum_probs=151.7

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcc-cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI-DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLN   76 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~-~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~   76 (566)
                      .||||++|+|+|++.|++   .+.+..... ....+.||||||++.+|+.+||+||+.|+...++.+..+..++++++++
T Consensus        48 sGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~  127 (372)
T 1v43_A           48 CGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAE  127 (372)
T ss_dssp             SSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            599999999999998765   233322111 1223579999999999999999999999866666666777889999999


Q ss_pred             HcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEecCChhHHHh
Q psy7366          77 KFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEA  155 (566)
Q Consensus        77 ~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiisH~~~~~~~  155 (566)
                      .+||+...++++.+|||||||||+|||||+.+|++|||||||++||+..++++.+.|+++.++ |.|+|++|||++++..
T Consensus       128 ~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~  207 (372)
T 1v43_A          128 LLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMT  207 (372)
T ss_dssp             HTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHH
T ss_pred             HcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999665 9999999999999999


Q ss_pred             hcCEEEEEeCCEEEEecChhHHHhh
Q psy7366         156 LCTKLTIMVNGQFTCLGSATHLKSK  180 (566)
Q Consensus       156 ~~d~i~vl~~G~i~~~g~~~~~~~~  180 (566)
                      +||||++|++|+++..|+++++...
T Consensus       208 ~adri~vl~~G~i~~~g~~~~l~~~  232 (372)
T 1v43_A          208 MGDRIAVMNRGQLLQIGSPTEVYLR  232 (372)
T ss_dssp             HCSEEEEEETTEEEEEECHHHHHHC
T ss_pred             hCCEEEEEECCEEEEeCCHHHHHhC
Confidence            9999999999999999999998653

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=100.00  E-value=1.2e-36  Score=299.81  Aligned_cols=177  Identities=25%  Similarity=0.349  Sum_probs=151.5

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcc-cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI-DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLN   76 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~-~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~   76 (566)
                      .||||++|+++|++.|.+   .+.+.+... ....++|||+||++.+++.+||+||+.++....+.  ....+++.++++
T Consensus        35 sGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~--~~~~~~~~~~l~  112 (240)
T 2onk_A           35 AGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVER--VERDRRVREMAE  112 (240)
T ss_dssp             SSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCH--HHHHHHHHHHHH
T ss_pred             CCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHcCC--chHHHHHHHHHH
Confidence            599999999999998765   233322111 12235799999999999999999999886533322  122567899999


Q ss_pred             HcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEecCChhHHHh
Q psy7366          77 KFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEA  155 (566)
Q Consensus        77 ~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiisH~~~~~~~  155 (566)
                      .+|+....++++.+||||||||++||+||+.+|++|||||||++||+.+++.++++|++++++ |+|||++|||++++..
T Consensus       113 ~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~  192 (240)
T 2onk_A          113 KLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAM  192 (240)
T ss_dssp             TTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHH
T ss_pred             HcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence            999998899999999999999999999999999999999999999999999999999998654 9999999999999999


Q ss_pred             hcCEEEEEeCCEEEEecChhHHHh
Q psy7366         156 LCTKLTIMVNGQFTCLGSATHLKS  179 (566)
Q Consensus       156 ~~d~i~vl~~G~i~~~g~~~~~~~  179 (566)
                      +||||++|++|+++..|+++++..
T Consensus       193 ~~d~i~~l~~G~i~~~g~~~~~~~  216 (240)
T 2onk_A          193 LADEVAVMLNGRIVEKGKLKELFS  216 (240)
T ss_dssp             HCSEEEEEETTEEEEEECHHHHHH
T ss_pred             hCCEEEEEECCEEEEECCHHHHHh
Confidence            999999999999999999988754

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=100.00  E-value=8.8e-40  Score=358.66  Aligned_cols=358  Identities=14%  Similarity=0.075  Sum_probs=230.2

Q ss_pred             CCcchHHHH--HhccccCCC---ccCCCCCcc--cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHH
Q psy7366           1 MGLTTTPKR--VVTLLLTTQ---KVPGSNPTI--DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNE   73 (566)
Q Consensus         1 ~Gktt~~k~--~~~~~~~~~---~~~~~~~~~--~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~   73 (566)
                      .||||++|+  +.|++.+++   .+.+.....  ....+.+||++|++.....      +.+ ..... +     .+..+
T Consensus        50 sGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~------l~~-~~~~~-~-----~~~~~  116 (525)
T 1tf7_A           50 TGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGK------LFI-LDASP-D-----PEGQE  116 (525)
T ss_dssp             SSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTS------EEE-EECCC-C-----SSCCS
T ss_pred             CCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCc------EEE-EecCc-c-----cchhh
Confidence            599999999  678887565   233332111  1123568999998653211      100 00000 0     00112


Q ss_pred             HHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCC-----CCHHHHHHHHHHHHHHHhCCCEEEEecC
Q psy7366          74 SLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSG-----MDPGARRFLWTCIERAVSEGRCVILTSH  148 (566)
Q Consensus        74 ~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~-----LD~~~~~~l~~~l~~l~~~g~tviiisH  148 (566)
                      +++.++++...++.+.+||+||             |++++|||||+.     ||+..++.++++++.+++.|+|||++||
T Consensus       117 ~l~~~~l~~~~~~~~~~LS~g~-------------~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH  183 (525)
T 1tf7_A          117 VVGGFDLSALIERINYAIQKYR-------------ARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTE  183 (525)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHT-------------CSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred             hhcccCHHHHHHHHHHHHHHcC-------------CCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEec
Confidence            3344455555566777777764             789999999984     6999999999999999888999999999


Q ss_pred             ChhHH---------HhhcCEEEEEeCCEEEEecChhHHHhhccCccccCCCCCCCCccchhHHHhhccCCCCccccCCCc
Q psy7366         149 NMEEC---------EALCTKLTIMVNGQFTCLGSATHLKSKSMALPVSGNDLGRGDPVRSELSRALNDGSGSGIRNSARP  219 (566)
Q Consensus       149 ~~~~~---------~~~~d~i~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (566)
                      +++++         ..+||+|++|++|++  .|.......   ..+..+...                          ..
T Consensus       184 ~~~~~~~~~~~~i~~~laD~vi~L~~~~~--~G~~~r~l~---~~k~r~~~~--------------------------~~  232 (525)
T 1tf7_A          184 RIEEYGPIARYGVEEFVSDNVVILRNVLE--GERRRRTLE---ILKLRGTSH--------------------------MK  232 (525)
T ss_dssp             CSSSSSCSSTTSCHHHHCSEEEEEEEECS--TTCCEEEEE---EEEETTSCC--------------------------CC
T ss_pred             CCCCccccccccceeeeeeEEEEEEEEcc--CCceeEEEE---EEECCCCCC--------------------------CC
Confidence            99984         566999999999653  121110000   000000000                          00


Q ss_pred             ccccccccccCCccchhhhhhhHHHHHHHHHHHHhhhhheeeccCCeeeeeeccchhhchHHHHHHHHHHHHHHHHHHHH
Q psy7366         220 EVSGFYNENIDGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNGTRLVAVNIWAWRIIGKNLTCMACHGALYSAINLS  299 (566)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (566)
                      ....+.                                  +. ..+..                                
T Consensus       233 ~~~~~~----------------------------------i~-~~gi~--------------------------------  245 (525)
T 1tf7_A          233 GEYPFT----------------------------------IT-DHGIN--------------------------------  245 (525)
T ss_dssp             SEEEEE----------------------------------EE-TTEEE--------------------------------
T ss_pred             ceEEEE----------------------------------Ec-CCCEE--------------------------------
Confidence            000000                                  00 00000                                


Q ss_pred             HHHHHHhhhhcccccCCCCCCCcchhHHHHHHhhhcCCCCCCeEEEeeeEEEeCCcCCCcceeeee-eEEEeCCcEEEEE
Q psy7366         300 IEYKVFSRCFTRSNLHPVPVSLEEDDVRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQI-SFGVGRGECFGLL  378 (566)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~~~~~l~~i-sl~i~~Ge~~~l~  378 (566)
                                    .  .+ . ..             ......+.+++++..|+       -|+.+ +..|++|++++|+
T Consensus       246 --------------v--~p-~-~~-------------~~~~~~~~~~~l~~g~~-------~ld~vL~g~i~~G~i~~i~  287 (525)
T 1tf7_A          246 --------------I--FP-L-GA-------------MRLTQRSSNVRVSSGVV-------RLDEMCGGGFFKDSIILAT  287 (525)
T ss_dssp             --------------E--CC-T-TT-------------CCSCCCCCCCEECCSCH-------HHHHHTTSSEESSCEEEEE
T ss_pred             --------------E--Ee-c-cc-------------cccccccccceeecChH-------HHHHHhCCCCCCCcEEEEE
Confidence                          0  00 0 00             00011245566654332       13322 4589999999999


Q ss_pred             cCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHH
Q psy7366         379 GLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIV  458 (566)
Q Consensus       379 G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~  458 (566)
                      ||||||||||+++++|..+|. |+      .          .+.|++|++.    ..+.++..    ..+..       +
T Consensus       288 G~~GsGKSTLl~~l~g~~~~~-G~------~----------vi~~~~ee~~----~~l~~~~~----~~g~~-------~  335 (525)
T 1tf7_A          288 GATGTGKTLLVSRFVENACAN-KE------R----------AILFAYEESR----AQLLRNAY----SWGMD-------F  335 (525)
T ss_dssp             ECTTSSHHHHHHHHHHHHHTT-TC------C----------EEEEESSSCH----HHHHHHHH----TTSCC-------H
T ss_pred             eCCCCCHHHHHHHHHHHHHhC-CC------C----------EEEEEEeCCH----HHHHHHHH----HcCCC-------H
Confidence            999999999999999998874 53      0          1445566531    12222221    11222       1


Q ss_pred             HHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHH-----HHHHHHHHHHHHHhCCcEEEEE
Q psy7366         459 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPG-----ARRFLWTCIERAVSEGRCVILT  533 (566)
Q Consensus       459 ~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~-----~~~~l~~~l~~~~~~g~tvl~v  533 (566)
                      .+ +..+++....+.++.+|||||+||+++|+++..+|++||+| ||++||+.     .+..++++++.+++.|.|||++
T Consensus       336 ~~-~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilv  413 (525)
T 1tf7_A          336 EE-MERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFT  413 (525)
T ss_dssp             HH-HHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             HH-HHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEE
Confidence            12 23456666678889999999999999999999999999999 99999999     9999999999998889999999


Q ss_pred             ccCH----------HHHHhhCCEEEEEECCE
Q psy7366         534 SHNM----------EECEALCTKLTIMVNGQ  554 (566)
Q Consensus       534 sHd~----------~~~~~~~drv~~l~~G~  554 (566)
                      ||+.          +++..+||++++|++|+
T Consensus       414 sh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge  444 (525)
T 1tf7_A          414 NTSDQFMGAHSITDSHISTITDTIILLQYVE  444 (525)
T ss_dssp             EECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred             ECcccccCcccccCcccceeeeEEEEEEEEE
Confidence            9999          78888999999999886

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=100.00  E-value=2e-36  Score=301.84  Aligned_cols=176  Identities=21%  Similarity=0.247  Sum_probs=151.4

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcc----cccccceeEEcCCCCCCCCCCHHHHHHHHHHh--cC----------
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI----DKNLSYIGYCPQFDALNDRLTPREHLEFYSRV--RN----------   61 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~----~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~--~~----------   61 (566)
                      .||||++|+++|++.|.+   .+.+.....    .....+||||||++.+++.+||.||+.++...  .+          
T Consensus        44 sGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~  123 (257)
T 1g6h_A           44 SGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKW  123 (257)
T ss_dssp             SSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSS
T ss_pred             CCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccc
Confidence            599999999999998755   233322111    11134699999999999999999999886543  22          


Q ss_pred             -CChhhHHHHHHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCC
Q psy7366          62 -VPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEG  140 (566)
Q Consensus        62 -~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g  140 (566)
                       .+..+..+++.++++.+||+...++++.+|||||||||+||+||+.+|++|||||||++||+.+++.+.++|++++++|
T Consensus       124 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g  203 (257)
T 1g6h_A          124 IPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKG  203 (257)
T ss_dssp             CCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTT
T ss_pred             cCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCC
Confidence             2334456788999999999988999999999999999999999999999999999999999999999999999997779


Q ss_pred             CEEEEecCChhHHHhhcCEEEEEeCCEEEEecChhH
Q psy7366         141 RCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATH  176 (566)
Q Consensus       141 ~tviiisH~~~~~~~~~d~i~vl~~G~i~~~g~~~~  176 (566)
                      +|||++|||++++..+||||++|++|+++..|++++
T Consensus       204 ~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  239 (257)
T 1g6h_A          204 ITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE  239 (257)
T ss_dssp             CEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHH
T ss_pred             CEEEEEecCHHHHHHhCCEEEEEECCEEEEEeCHHH
Confidence            999999999999999999999999999999998887

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=100.00  E-value=3.8e-36  Score=310.78  Aligned_cols=176  Identities=21%  Similarity=0.349  Sum_probs=153.9

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcc-cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI-DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLN   76 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~-~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~   76 (566)
                      +||||++|+|+|++.|++   .+.+..... ....+.||||||++.+|+.+||+||+.|+...++.+..   +++.++++
T Consensus        37 sGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~---~~v~~~l~  113 (348)
T 3d31_A           37 AGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDP---KRVLDTAR  113 (348)
T ss_dssp             HHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCH---HHHHHHHH
T ss_pred             ccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHH---HHHHHHHH
Confidence            499999999999998765   233322111 11235699999999999999999999998766554433   78899999


Q ss_pred             HcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEecCChhHHHh
Q psy7366          77 KFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS-EGRCVILTSHNMEECEA  155 (566)
Q Consensus        77 ~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviiisH~~~~~~~  155 (566)
                      .+||+...++++.+|||||||||+|||||+.+|++|||||||++||+..++.+++.|+++.+ .|.|||++|||++++..
T Consensus       114 ~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~  193 (348)
T 3d31_A          114 DLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARI  193 (348)
T ss_dssp             HTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             HcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999965 59999999999999999


Q ss_pred             hcCEEEEEeCCEEEEecChhHHHh
Q psy7366         156 LCTKLTIMVNGQFTCLGSATHLKS  179 (566)
Q Consensus       156 ~~d~i~vl~~G~i~~~g~~~~~~~  179 (566)
                      +||||++|++|+++..|+++++..
T Consensus       194 ~adri~vl~~G~i~~~g~~~~~~~  217 (348)
T 3d31_A          194 MADRIAVVMDGKLIQVGKPEEIFE  217 (348)
T ss_dssp             HCSEEEEESSSCEEEEECHHHHHS
T ss_pred             hCCEEEEEECCEEEEECCHHHHHh
Confidence            999999999999999999998864

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=100.00  E-value=6.8e-36  Score=294.95  Aligned_cols=177  Identities=23%  Similarity=0.264  Sum_probs=151.0

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCccc----ccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTID----KNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNE   73 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~~----~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~   73 (566)
                      .||||++|+++|++.|.+   .+.+......    ..+.+|||+||++.+++.+||+||+.++.. ...+..+..+++++
T Consensus        43 sGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~-~~~~~~~~~~~~~~  121 (240)
T 1ji0_A           43 AGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAY-NRKDKEGIKRDLEW  121 (240)
T ss_dssp             SSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGT-TCCCSSHHHHHHHH
T ss_pred             CCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhh-cCCCHHHHHHHHHH
Confidence            599999999999997765   2333221111    112459999999999999999999988642 22334456678889


Q ss_pred             HHHHcC-CCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhH
Q psy7366          74 SLNKFA-LGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEE  152 (566)
Q Consensus        74 ~l~~~g-l~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~  152 (566)
                      +++.++ +....++++.+||||||||++||+||+.+|++|||||||++||+.+++.++++|++++++|+|||++|||+++
T Consensus       122 ~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~  201 (240)
T 1ji0_A          122 IFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALG  201 (240)
T ss_dssp             HHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHH
T ss_pred             HHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH
Confidence            999995 9888899999999999999999999999999999999999999999999999999997789999999999999


Q ss_pred             HHhhcCEEEEEeCCEEEEecChhHHH
Q psy7366         153 CEALCTKLTIMVNGQFTCLGSATHLK  178 (566)
Q Consensus       153 ~~~~~d~i~vl~~G~i~~~g~~~~~~  178 (566)
                      +..+||||++|++|+++..|+++++.
T Consensus       202 ~~~~~d~v~~l~~G~i~~~g~~~~~~  227 (240)
T 1ji0_A          202 ALKVAHYGYVLETGQIVLEGKASELL  227 (240)
T ss_dssp             HHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred             HHHhCCEEEEEECCEEEEEcCHHHHh
Confidence            99999999999999999999988764

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=100.00  E-value=1.9e-35  Score=295.68  Aligned_cols=176  Identities=16%  Similarity=0.237  Sum_probs=152.0

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcc---cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI---DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNES   74 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~---~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~   74 (566)
                      .||||++|+++|++.|++   .+.+.....   ....+.+||++|++.+++.+||+||+.++....  ...+..++++++
T Consensus        48 sGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~  125 (266)
T 4g1u_C           48 AGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPY--GGSQDRQALQQV  125 (266)
T ss_dssp             SCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS--CSTTHHHHHHHH
T ss_pred             CcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhc--CcHHHHHHHHHH
Confidence            599999999999998765   233322111   122346999999999988899999999875433  334566789999


Q ss_pred             HHHcCCCcccccccccCChhHHHHHHHHHHHhC------CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEec
Q psy7366          75 LNKFALGHYSDREVRTLSGGNKRKLSTAIALLG------NPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTS  147 (566)
Q Consensus        75 l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~------~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiis  147 (566)
                      ++.+|+....++++.+|||||||||+||+||+.      +|++|||||||++||+.++..+.++|++++++ |+|||+||
T Consensus       126 l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vt  205 (266)
T 4g1u_C          126 MAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVL  205 (266)
T ss_dssp             HHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEEC
T ss_pred             HHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEE
Confidence            999999999999999999999999999999999      99999999999999999999999999999765 57999999


Q ss_pred             CChhHHHhhcCEEEEEeCCEEEEecChhHHH
Q psy7366         148 HNMEECEALCTKLTIMVNGQFTCLGSATHLK  178 (566)
Q Consensus       148 H~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~  178 (566)
                      ||++++..+||||++|++|++++.|+++++.
T Consensus       206 Hdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~  236 (266)
T 4g1u_C          206 HDLNLAALYADRIMLLAQGKLVACGTPEEVL  236 (266)
T ss_dssp             SCHHHHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred             cCHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence            9999999999999999999999999998874

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.5e-36  Score=329.38  Aligned_cols=197  Identities=20%  Similarity=0.290  Sum_probs=153.1

Q ss_pred             eeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEE-----------EcCccCCCc-h
Q psy7366         347 RLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY-----------VMNHSIRDS-M  414 (566)
Q Consensus       347 ~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~-----------~~g~~~~~~-~  414 (566)
                      |++++|+.   +...+++++ .+++||++||+||||||||||||+|+|+++|++|+|.           +.|..+... .
T Consensus        82 ~~~~~Y~~---~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~  157 (608)
T 3j16_B           82 HVTHRYSA---NSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFT  157 (608)
T ss_dssp             TEEEECST---TSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHH
T ss_pred             CeEEEECC---CceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhh
Confidence            45777762   345677777 6899999999999999999999999999999999982           333222110 0


Q ss_pred             HHhcCc--eEEEecCCCC------CCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHH
Q psy7366         415 DLVRSY--IGYCPQFDAL------NDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKL  486 (566)
Q Consensus       415 ~~~~~~--i~~v~q~~~l------~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv  486 (566)
                      ......  ..+.+|....      .+..++.+++...    .   ....+++.++++.+++....++++.+|||||||||
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~----~---~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv  230 (608)
T 3j16_B          158 KMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLR----M---EKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRF  230 (608)
T ss_dssp             HHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHH----C---CSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHH
T ss_pred             HHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhh----h---hhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHH
Confidence            111122  2334443211      1123455544321    1   11235678999999999999999999999999999


Q ss_pred             HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCE
Q psy7366         487 STAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ  554 (566)
Q Consensus       487 ~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~  554 (566)
                      +|||||+.+|++|||||||++||+.++..+.++|++++++|.|||+||||++++..+|||+++|++|.
T Consensus       231 ~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~  298 (608)
T 3j16_B          231 AIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVP  298 (608)
T ss_dssp             HHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCT
T ss_pred             HHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence            99999999999999999999999999999999999998889999999999999999999999998764

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=100.00  E-value=1.7e-35  Score=296.40  Aligned_cols=179  Identities=23%  Similarity=0.291  Sum_probs=152.1

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcccccccceeEEcCCC-CCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTIDKNLSYIGYCPQFD-ALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLN   76 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~~~~~~~ig~v~Q~~-~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~   76 (566)
                      .||||++|+++|++.|.+   .+.+.........+.||||||+| .+++.+||+||+.++.... .+..+..+++.++++
T Consensus        44 sGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~l~  122 (266)
T 2yz2_A           44 SGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNF-YPDRDPVPLVKKAME  122 (266)
T ss_dssp             SSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTT-CTTSCSHHHHHHHHH
T ss_pred             CcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Confidence            599999999999997655   23332211112235699999996 4666799999999865433 333445678899999


Q ss_pred             HcCCC--cccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHH
Q psy7366          77 KFALG--HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECE  154 (566)
Q Consensus        77 ~~gl~--~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~  154 (566)
                      .+||.  ...++++.+|||||||||+||+||+.+|++|||||||++||+.+++.++++|++++++|+|||++|||++++.
T Consensus       123 ~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~  202 (266)
T 2yz2_A          123 FVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVI  202 (266)
T ss_dssp             HTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTG
T ss_pred             HcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            99999  8889999999999999999999999999999999999999999999999999999767999999999999999


Q ss_pred             hhcCEEEEEeCCEEEEecChhHHHhh
Q psy7366         155 ALCTKLTIMVNGQFTCLGSATHLKSK  180 (566)
Q Consensus       155 ~~~d~i~vl~~G~i~~~g~~~~~~~~  180 (566)
                      .+||||++|++|+++..|+++++...
T Consensus       203 ~~~d~v~~l~~G~i~~~g~~~~~~~~  228 (266)
T 2yz2_A          203 NHVDRVVVLEKGKKVFDGTRMEFLEK  228 (266)
T ss_dssp             GGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred             HhCCEEEEEECCEEEEeCCHHHHhcC
Confidence            99999999999999999999887654

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=100.00  E-value=8.8e-35  Score=288.95  Aligned_cols=170  Identities=22%  Similarity=0.300  Sum_probs=148.0

Q ss_pred             CCcchHHHHHhccccCCCccCCCCCcccccccceeEEcCCCCCCCCCCHHHHHHHHHHhc-C---CChhhHHHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQKVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVR-N---VPSVLLNTIVNESLN   76 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~-~---~~~~~~~~~~~~~l~   76 (566)
                      .||||++|+++|++.|.+   |.  ..  ..+.|||+||++.+++.+||+||+.++.... +   .......+++.++++
T Consensus        42 sGKSTLl~~l~Gl~~p~~---G~--I~--~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~  114 (253)
T 2nq2_C           42 CGKSTLLDLLLGIHRPIQ---GK--IE--VYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALD  114 (253)
T ss_dssp             SSHHHHHHHHTTSSCCSE---EE--EE--ECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHhCCCCCCC---cE--EE--EeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHH
Confidence            599999999999997653   11  11  2346999999999998999999998865322 2   123344678899999


Q ss_pred             HcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEecCChhHHHh
Q psy7366          77 KFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEA  155 (566)
Q Consensus        77 ~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiisH~~~~~~~  155 (566)
                      .+||....++++.+||||||||++||+||+.+|++|||||||++||+.+++++.++|++++++ |+|||++|||++++..
T Consensus       115 ~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~  194 (253)
T 2nq2_C          115 YLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVA  194 (253)
T ss_dssp             HTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHH
T ss_pred             HcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHH
Confidence            999998899999999999999999999999999999999999999999999999999999776 9999999999999999


Q ss_pred             hcCEEEEEeCCEEEEecChhHHH
Q psy7366         156 LCTKLTIMVNGQFTCLGSATHLK  178 (566)
Q Consensus       156 ~~d~i~vl~~G~i~~~g~~~~~~  178 (566)
                      +||||++|++|+ +..|+++++.
T Consensus       195 ~~d~v~~l~~G~-~~~g~~~~~~  216 (253)
T 2nq2_C          195 IANKTLLLNKQN-FKFGETRNIL  216 (253)
T ss_dssp             HCSEEEEEETTE-EEEEEHHHHC
T ss_pred             hCCEEEEEeCCe-EecCCHHHHh
Confidence            999999999999 9889887763

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=100.00  E-value=2.7e-35  Score=321.88  Aligned_cols=192  Identities=22%  Similarity=0.313  Sum_probs=152.0

Q ss_pred             eeEEEeCCcCCCcceeeeeeEEE-eCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEE-----------EEcCccCCCch
Q psy7366         347 RLFKIYANSKGTKPAVNQISFGV-GRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA-----------YVMNHSIRDSM  414 (566)
Q Consensus       347 ~l~~~y~~~~~~~~~l~~isl~i-~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i-----------~~~g~~~~~~~  414 (566)
                      +.+..|+.   +  -|+-..|.+ ++||++||+||||||||||+|+|+|+++|++|+|           .++|+++....
T Consensus         4 ~~~~~~~~---~--~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~   78 (538)
T 3ozx_A            4 EVIHRYKV---N--GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYF   78 (538)
T ss_dssp             CEEEESST---T--SCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHH
T ss_pred             CCceecCC---C--ceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHH
Confidence            45677862   2  344445554 5999999999999999999999999999999998           56676653211


Q ss_pred             -HHh--cCceEEEecCC----CCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHH
Q psy7366         415 -DLV--RSYIGYCPQFD----ALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLS  487 (566)
Q Consensus       415 -~~~--~~~i~~v~q~~----~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~  487 (566)
                       ...  ...+...+|..    .++. .++.+++...    ..     .+++.++++.+++....++++.+|||||||||+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~l~~~----~~-----~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~  148 (538)
T 3ozx_A           79 KELYSNELKIVHKIQYVEYASKFLK-GTVNEILTKI----DE-----RGKKDEVKELLNMTNLWNKDANILSGGGLQRLL  148 (538)
T ss_dssp             HHHHTTCCCEEEECSCTTGGGTTCC-SBHHHHHHHH----CC-----SSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHH
T ss_pred             HHHhhcccchhhccchhhhhhhhcc-CcHHHHhhcc----hh-----HHHHHHHHHHcCCchhhcCChhhCCHHHHHHHH
Confidence             111  12344445543    2332 3787765321    11     124678899999999999999999999999999


Q ss_pred             HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCE
Q psy7366         488 TAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ  554 (566)
Q Consensus       488 la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~  554 (566)
                      |||||+.+|++|||||||++||+.++..+.++|+++++ |+|||+||||++++..+||++++|++|.
T Consensus       149 iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl~~~~~~~d~i~vl~~~~  214 (538)
T 3ozx_A          149 VAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDLIVLDYLTDLIHIIYGES  214 (538)
T ss_dssp             HHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred             HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence            99999999999999999999999999999999999965 9999999999999999999999998653

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=100.00  E-value=5.8e-35  Score=294.11  Aligned_cols=178  Identities=20%  Similarity=0.221  Sum_probs=147.5

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCc-----ccccccceeEEcCCCCCC--CCCCHHHHHHHHHHh----cCCChhh
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPT-----IDKNLSYIGYCPQFDALN--DRLTPREHLEFYSRV----RNVPSVL   66 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~-----~~~~~~~ig~v~Q~~~l~--~~~tv~e~l~~~~~~----~~~~~~~   66 (566)
                      .||||++|+++|++.|++   .+.+....     .....+.||||||++.++  ..+||+||+.++...    ++....+
T Consensus        58 sGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~  137 (279)
T 2ihy_A           58 AGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDE  137 (279)
T ss_dssp             SSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHH
T ss_pred             CcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHH
Confidence            599999999999998765   23332211     111235699999998643  356999999875321    1222334


Q ss_pred             HHHHHHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEE--E
Q psy7366          67 LNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCV--I  144 (566)
Q Consensus        67 ~~~~~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tv--i  144 (566)
                      ..+++.++++.+||....++++.+|||||||||+||+||+.+|++|||||||++||+.++++++++|++++++|+||  |
T Consensus       138 ~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~i  217 (279)
T 2ihy_A          138 IRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMI  217 (279)
T ss_dssp             HHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEE
T ss_pred             HHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence            56788999999999988999999999999999999999999999999999999999999999999999997669999  9


Q ss_pred             EecCChhHHHhhcCEEEEEeCCEEEEecChhHHH
Q psy7366         145 LTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  178 (566)
Q Consensus       145 iisH~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~  178 (566)
                      ++|||++++..+||||++|++|+++..|+++++.
T Consensus       218 ivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  251 (279)
T 2ihy_A          218 YVTHFIEEITANFSKILLLKDGQSIQQGAVEDIL  251 (279)
T ss_dssp             EEESCGGGCCTTCCEEEEEETTEEEEEEEHHHHC
T ss_pred             EEecCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence            9999999999999999999999999999988764

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=100.00  E-value=2e-34  Score=285.38  Aligned_cols=173  Identities=18%  Similarity=0.247  Sum_probs=147.4

Q ss_pred             CCcchHHHHHhccccC-CC-ccCCCCCcc---cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLT-TQ-KVPGSNPTI---DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL   75 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~-~~-~~~~~~~~~---~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l   75 (566)
                      .||||++|+++|++.| |+ .+.+.....   ....+.|||+||++.+++.+||+||+.++.. ...+    .+++.+++
T Consensus        37 sGKSTLlk~l~Gl~~p~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~-~~~~----~~~~~~~l  111 (249)
T 2qi9_C           37 AGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQH-DKTR----TELLNDVA  111 (249)
T ss_dssp             SSHHHHHHHHTTSSCCEEEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCS-STTC----HHHHHHHH
T ss_pred             CcHHHHHHHHhCCCCCCeEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhc-cCCc----HHHHHHHH
Confidence            5999999999999866 33 122221110   1123469999999999999999999987531 1111    56788999


Q ss_pred             HHcCCCcccccccccCChhHHHHHHHHHHHhCCCC-------EEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecC
Q psy7366          76 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPP-------LIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH  148 (566)
Q Consensus        76 ~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~-------vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH  148 (566)
                      +.+|++...++++.+||||||||++||+||+.+|+       +|||||||++||+.+++.++++|++++++|+|||++||
T Consensus       112 ~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtH  191 (249)
T 2qi9_C          112 GALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSH  191 (249)
T ss_dssp             HHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred             HHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence            99999998999999999999999999999999999       99999999999999999999999999777999999999


Q ss_pred             ChhHHHhhcCEEEEEeCCEEEEecChhHHH
Q psy7366         149 NMEECEALCTKLTIMVNGQFTCLGSATHLK  178 (566)
Q Consensus       149 ~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~  178 (566)
                      |++++..+||||++|++|+++..|+++++.
T Consensus       192 d~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  221 (249)
T 2qi9_C          192 DLNHTLRHAHRAWLLKGGKMLASGRREEVL  221 (249)
T ss_dssp             CHHHHHHHCSEEEEEETTEEEEEEEHHHHS
T ss_pred             CHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence            999999999999999999999999888764

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=100.00  E-value=4.6e-34  Score=283.59  Aligned_cols=176  Identities=19%  Similarity=0.200  Sum_probs=141.0

Q ss_pred             CCcchHHHHHhcc--ccCCC---ccCCCCCcc---c-ccccceeEEcCCCCCCCCCCHHHHHHHHHHh-cC--CChhhHH
Q psy7366           1 MGLTTTPKRVVTL--LLTTQ---KVPGSNPTI---D-KNLSYIGYCPQFDALNDRLTPREHLEFYSRV-RN--VPSVLLN   68 (566)
Q Consensus         1 ~Gktt~~k~~~~~--~~~~~---~~~~~~~~~---~-~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~-~~--~~~~~~~   68 (566)
                      .||||++|+++|+  +.|.+   .+.+.....   . .....|+|+||++.+++.+||.||+.+.... .+  .+..+..
T Consensus        40 sGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~  119 (250)
T 2d2e_A           40 AGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFW  119 (250)
T ss_dssp             SSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred             CCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHH
Confidence            5999999999998  43432   233322111   1 1124599999999999999999999886532 22  2333455


Q ss_pred             HHHHHHHHHcCCC-ccccccccc-CChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEe
Q psy7366          69 TIVNESLNKFALG-HYSDREVRT-LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILT  146 (566)
Q Consensus        69 ~~~~~~l~~~gl~-~~~~~~~~~-LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviii  146 (566)
                      +++.++++.+|++ ...++++.+ ||||||||++||+||+.+|++|||||||++||+.+++.+.++|++++++|+|||++
T Consensus       120 ~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~v  199 (250)
T 2d2e_A          120 TKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVI  199 (250)
T ss_dssp             HHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEE
T ss_pred             HHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEE
Confidence            7789999999994 778999999 99999999999999999999999999999999999999999999997679999999


Q ss_pred             cCChhHHHhh-cCEEEEEeCCEEEEecChhH
Q psy7366         147 SHNMEECEAL-CTKLTIMVNGQFTCLGSATH  176 (566)
Q Consensus       147 sH~~~~~~~~-~d~i~vl~~G~i~~~g~~~~  176 (566)
                      |||++++..+ ||||++|++|+++..|+++.
T Consensus       200 tHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~  230 (250)
T 2d2e_A          200 THYQRILNYIQPDKVHVMMDGRVVATGGPEL  230 (250)
T ss_dssp             CSSSGGGGTSCCSEEEEEETTEEEEEESHHH
T ss_pred             ecCHHHHHHhcCCEEEEEECCEEEEEeCHHH
Confidence            9999999988 59999999999999998763

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=100.00  E-value=1.2e-33  Score=283.00  Aligned_cols=178  Identities=17%  Similarity=0.190  Sum_probs=146.3

Q ss_pred             CCcchHHHHHhccc--cC--CC-ccCCCCCcc---cc-cccceeEEcCCCCCCCCCCHHHHHHHHHHh----cC---CCh
Q psy7366           1 MGLTTTPKRVVTLL--LT--TQ-KVPGSNPTI---DK-NLSYIGYCPQFDALNDRLTPREHLEFYSRV----RN---VPS   64 (566)
Q Consensus         1 ~Gktt~~k~~~~~~--~~--~~-~~~~~~~~~---~~-~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~----~~---~~~   64 (566)
                      .||||++|+++|++  .|  |+ .+.+.....   .. ...+|||+||++.+++.+||.||+.+....    .+   .+.
T Consensus        57 sGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~  136 (267)
T 2zu0_C           57 SGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDR  136 (267)
T ss_dssp             SSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCH
T ss_pred             CCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCH
Confidence            59999999999984  23  33 233322111   11 123599999999999999999999875421    12   233


Q ss_pred             hhHHHHHHHHHHHcCCC-cccccccc-cCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q psy7366          65 VLLNTIVNESLNKFALG-HYSDREVR-TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC  142 (566)
Q Consensus        65 ~~~~~~~~~~l~~~gl~-~~~~~~~~-~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~t  142 (566)
                      .+..+++.++++.+|+. ...++++. +|||||||||+||+||+.+|++|||||||++||+.++++++++|++++++|+|
T Consensus       137 ~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~t  216 (267)
T 2zu0_C          137 FDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRS  216 (267)
T ss_dssp             HHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCE
T ss_pred             HHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCE
Confidence            44567889999999996 56788887 59999999999999999999999999999999999999999999998767999


Q ss_pred             EEEecCChhHHHhh-cCEEEEEeCCEEEEecChhHHH
Q psy7366         143 VILTSHNMEECEAL-CTKLTIMVNGQFTCLGSATHLK  178 (566)
Q Consensus       143 viiisH~~~~~~~~-~d~i~vl~~G~i~~~g~~~~~~  178 (566)
                      ||++|||++++..+ ||||++|++|+++..|+++++.
T Consensus       217 viivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  253 (267)
T 2zu0_C          217 FIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVK  253 (267)
T ss_dssp             EEEECSSGGGGGTSCCSEEEEEETTEEEEEECTTHHH
T ss_pred             EEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCHHHHh
Confidence            99999999999886 9999999999999999988764

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=100.00  E-value=1.9e-33  Score=280.46  Aligned_cols=170  Identities=22%  Similarity=0.269  Sum_probs=145.2

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCccccccccee-EEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTIDKNLSYIG-YCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLN   76 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~~~~~~~ig-~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~   76 (566)
                      .||||++|+++|++ |.+   .+.+.........+.|| |+||++.+  .+||.||+.++.....    ...+++.++++
T Consensus        41 sGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~~----~~~~~~~~~l~  113 (263)
T 2pjz_A           41 SGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTVNDIVYLYEELKG----LDRDLFLEMLK  113 (263)
T ss_dssp             SSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBHHHHHHHHHHHTC----CCHHHHHHHHH
T ss_pred             CCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEEeCCCCcc--CCcHHHHHHHhhhhcc----hHHHHHHHHHH
Confidence            59999999999999 876   23332111001135799 99999987  8999999998765432    22467889999


Q ss_pred             HcCCC-cccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHHh
Q psy7366          77 KFALG-HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEA  155 (566)
Q Consensus        77 ~~gl~-~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~  155 (566)
                      .+|+. ...++++.+||||||||++||+||+.+|++|||||||++||+.++++++++|+++++   |||++|||++++..
T Consensus       114 ~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~~~~~~  190 (263)
T 2pjz_A          114 ALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHELDMLNL  190 (263)
T ss_dssp             HTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCGGGGGG
T ss_pred             HcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCHHHHHH
Confidence            99998 889999999999999999999999999999999999999999999999999998743   99999999999999


Q ss_pred             hcC-EEEEEeCCEEEEecChhHHHhh
Q psy7366         156 LCT-KLTIMVNGQFTCLGSATHLKSK  180 (566)
Q Consensus       156 ~~d-~i~vl~~G~i~~~g~~~~~~~~  180 (566)
                      +|| +|++|++|+++..|+++++...
T Consensus       191 ~~d~~i~~l~~G~i~~~g~~~~l~~~  216 (263)
T 2pjz_A          191 YKEYKAYFLVGNRLQGPISVSELLES  216 (263)
T ss_dssp             CTTSEEEEEETTEEEEEEEHHHHHTE
T ss_pred             hcCceEEEEECCEEEEecCHHHHHhh
Confidence            999 9999999999999999988643

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=100.00  E-value=2.6e-33  Score=281.16  Aligned_cols=176  Identities=18%  Similarity=0.218  Sum_probs=142.8

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcc---cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhH-----HH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI---DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLL-----NT   69 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~---~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~-----~~   69 (566)
                      .||||++|+++|++.|.+   .+.+.+...   ....+.||||||++.+++ .||+||+.++..... ...+.     ..
T Consensus        56 sGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~-~~~~~~~~~~~~  133 (271)
T 2ixe_A           56 SGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLTRTP-TMEEITAVAMES  133 (271)
T ss_dssp             SSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTCSSCC-CHHHHHHHHHHH
T ss_pred             CCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCcccc-ccHHHHHhhhcccCC-hHHHHHHHHHHH
Confidence            599999999999998765   233322111   112346999999999887 599999987642211 10111     12


Q ss_pred             HHHHHHHHc--CCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEe
Q psy7366          70 IVNESLNKF--ALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS-EGRCVILT  146 (566)
Q Consensus        70 ~~~~~l~~~--gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviii  146 (566)
                      .+.++++.+  |++...++++.+|||||||||+|||||+.+|+||||||||++||+.++..++++|+++++ .|+|||+|
T Consensus       134 ~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviiv  213 (271)
T 2ixe_A          134 GAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLI  213 (271)
T ss_dssp             TCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEE
T ss_pred             hHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEE
Confidence            356778888  787788999999999999999999999999999999999999999999999999999854 49999999


Q ss_pred             cCChhHHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy7366         147 SHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  179 (566)
Q Consensus       147 sH~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~  179 (566)
                      |||++++.. ||+|++|++|+++..|+++++..
T Consensus       214 tHd~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~  245 (271)
T 2ixe_A          214 TQQLSLAER-AHHILFLKEGSVCEQGTHLQLME  245 (271)
T ss_dssp             CSCHHHHTT-CSEEEEEETTEEEEEECHHHHHH
T ss_pred             eCCHHHHHh-CCEEEEEECCEEEEECCHHHHHh
Confidence            999999875 99999999999999999988754

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=100.00  E-value=1.8e-33  Score=272.18  Aligned_cols=162  Identities=20%  Similarity=0.241  Sum_probs=136.6

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNK   77 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~   77 (566)
                      .||||++|+++|++.|.+   .+.+.+..  ...+.|||+||++.+++.+||.||+.++....+. ..+ .+++.++++.
T Consensus        46 sGKSTLlk~l~Gl~~p~~G~I~~~g~~~~--~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~-~~~~~~~l~~  121 (214)
T 1sgw_A           46 IGKTTLLKTISTYLKPLKGEIIYNGVPIT--KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV-KVN-KNEIMDALES  121 (214)
T ss_dssp             SSHHHHHHHHTTSSCCSEEEEEETTEEGG--GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-CCC-HHHHHHHHHH
T ss_pred             CCHHHHHHHHhcCCCCCCeEEEECCEEhh--hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCC-chH-HHHHHHHHHH
Confidence            599999999999997665   23332211  2345799999999999999999999987655443 223 5678999999


Q ss_pred             cCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHHhhc
Q psy7366          78 FALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALC  157 (566)
Q Consensus        78 ~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~~~  157 (566)
                      +|++.. ++++.+||||||||++||+||+.+|++|||||||++||+.+++.+.++|++++++|+|||++|||++++..+|
T Consensus       122 ~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~  200 (214)
T 1sgw_A          122 VEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVN  200 (214)
T ss_dssp             TTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEE
T ss_pred             cCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC
Confidence            999888 9999999999999999999999999999999999999999999999999999767999999999999999999


Q ss_pred             CEEEEEeCCEE
Q psy7366         158 TKLTIMVNGQF  168 (566)
Q Consensus       158 d~i~vl~~G~i  168 (566)
                      |+|+.+ .|+|
T Consensus       201 d~v~~~-~~~~  210 (214)
T 1sgw_A          201 ENLHKY-STKI  210 (214)
T ss_dssp             EEGGGG-BC--
T ss_pred             CEEEEe-CCcc
Confidence            998744 4443

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=100.00  E-value=1e-32  Score=273.16  Aligned_cols=170  Identities=19%  Similarity=0.304  Sum_probs=137.0

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcc---cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI---DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNES   74 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~---~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~   74 (566)
                      .||||++|+++|++.|.+   .+.+.+...   ....+.||||||++.+++ .||+||+.++..  ..+    .+++.++
T Consensus        46 sGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~--~~~----~~~~~~~  118 (247)
T 2ff7_A           46 SGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLANP--GMS----VEKVIYA  118 (247)
T ss_dssp             SSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTTCT--TCC----HHHHHHH
T ss_pred             CCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCcccc-ccHHHHHhccCC--CCC----HHHHHHH
Confidence            599999999999997755   233322111   112346999999999886 599999987531  111    2345566


Q ss_pred             HHHcCCCc-----------ccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy7366          75 LNKFALGH-----------YSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCV  143 (566)
Q Consensus        75 l~~~gl~~-----------~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tv  143 (566)
                      ++.+|+..           ..++++.+|||||||||+||+||+.+|++|||||||++||+.+++.++++|++++ +|+||
T Consensus       119 l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tv  197 (247)
T 2ff7_A          119 AKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTV  197 (247)
T ss_dssp             HHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEE
T ss_pred             HHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEE
Confidence            66666653           3345678999999999999999999999999999999999999999999999984 69999


Q ss_pred             EEecCChhHHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy7366         144 ILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  179 (566)
Q Consensus       144 iiisH~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~  179 (566)
                      |++||+++++.. ||||++|++|+++..|+++++..
T Consensus       198 iivtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~  232 (247)
T 2ff7_A          198 IIIAHRLSTVKN-ADRIIVMEKGKIVEQGKHKELLS  232 (247)
T ss_dssp             EEECSSGGGGTT-SSEEEEEETTEEEEEECHHHHHT
T ss_pred             EEEeCCHHHHHh-CCEEEEEECCEEEEECCHHHHHh
Confidence            999999998865 99999999999999999988753

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=99.98  E-value=1.3e-32  Score=279.60  Aligned_cols=171  Identities=20%  Similarity=0.288  Sum_probs=136.6

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcc---cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI---DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNES   74 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~---~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~   74 (566)
                      .||||++|++++++-|.+   .+.+.+...   ....+.||||||+|.+|+ .||+||+.|+....  ..    .++.++
T Consensus        91 sGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~~~--~~----~~~~~~  163 (306)
T 3nh6_A           91 AGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFN-DTIADNIRYGRVTA--GN----DEVEAA  163 (306)
T ss_dssp             HHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCS-EEHHHHHHTTSTTC--CH----HHHHHH
T ss_pred             chHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCc-ccHHHHHHhhcccC--CH----HHHHHH
Confidence            489999999999997755   233322111   122457999999999985 59999998764322  12    223333


Q ss_pred             HHHc-----------CCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy7366          75 LNKF-----------ALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCV  143 (566)
Q Consensus        75 l~~~-----------gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tv  143 (566)
                      ++..           |++...++...+|||||||||+|||||+.+|+||||||||++||+.+...+.+.|+++. .++||
T Consensus       164 ~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~-~~~Tv  242 (306)
T 3nh6_A          164 AQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC-ANRTT  242 (306)
T ss_dssp             HHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHH-TTSEE
T ss_pred             HHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEE
Confidence            3333           34445567778999999999999999999999999999999999999999999999985 47999


Q ss_pred             EEecCChhHHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy7366         144 ILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK  180 (566)
Q Consensus       144 iiisH~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~~  180 (566)
                      |+||||++.+.. ||||++|++|+|++.|+++++...
T Consensus       243 i~itH~l~~~~~-aD~i~vl~~G~iv~~G~~~el~~~  278 (306)
T 3nh6_A          243 IVVAHRLSTVVN-ADQILVIKDGCIVERGRHEALLSR  278 (306)
T ss_dssp             EEECCSHHHHHT-CSEEEEEETTEEEEEECHHHHHHH
T ss_pred             EEEEcChHHHHc-CCEEEEEECCEEEEECCHHHHHhc
Confidence            999999999987 999999999999999999998654

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=99.97  E-value=2.2e-32  Score=270.37  Aligned_cols=171  Identities=22%  Similarity=0.317  Sum_probs=139.5

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCc---ccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPT---IDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNES   74 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~---~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~   74 (566)
                      .||||++|+++|++.|.+   .+.+.+..   .....+.||||||++.+++ .||+||+.++.. ...    ..+++.++
T Consensus        39 sGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~-~~~----~~~~~~~~  112 (243)
T 1mv5_A           39 GGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA-GTIRENLTYGLE-GDY----TDEDLWQV  112 (243)
T ss_dssp             SSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-EEHHHHTTSCTT-SCS----CHHHHHHH
T ss_pred             CCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCcccc-ccHHHHHhhhcc-CCC----CHHHHHHH
Confidence            599999999999997654   23332111   1122457999999999887 599999987521 111    13456788


Q ss_pred             HHHcCCCcccc-----------cccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy7366          75 LNKFALGHYSD-----------REVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCV  143 (566)
Q Consensus        75 l~~~gl~~~~~-----------~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tv  143 (566)
                      ++.+|+.+..+           +++.+||||||||++||+||+.+|++|||||||++||+.+++.+++.|++++ +|+||
T Consensus       113 l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tv  191 (243)
T 1mv5_A          113 LDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTT  191 (243)
T ss_dssp             HHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEE
T ss_pred             HHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEE
Confidence            88888866543           4568999999999999999999999999999999999999999999999987 69999


Q ss_pred             EEecCChhHHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy7366         144 ILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  179 (566)
Q Consensus       144 iiisH~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~  179 (566)
                      |++|||++++. .||||++|++|+++..|+++++..
T Consensus       192 i~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~  226 (243)
T 1mv5_A          192 LVIAHRLSTIV-DADKIYFIEKGQITGSGKHNELVA  226 (243)
T ss_dssp             EEECCSHHHHH-HCSEEEEEETTEECCCSCHHHHHH
T ss_pred             EEEeCChHHHH-hCCEEEEEECCEEEEeCCHHHHHh
Confidence            99999999886 599999999999999999988754

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=99.97  E-value=1.2e-31  Score=267.61  Aligned_cols=170  Identities=21%  Similarity=0.312  Sum_probs=135.5

Q ss_pred             CCcchHHHHHhccccC-CC-ccCCCCCcc---cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLT-TQ-KVPGSNPTI---DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL   75 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~-~~-~~~~~~~~~---~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l   75 (566)
                      .||||++|+++|++.+ |+ .+.+.+...   ....+.||||||++.+++ .||+||+.++..  ...    .+++.+++
T Consensus        57 sGKSTLl~~l~Gl~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~--~~~----~~~~~~~l  129 (260)
T 2ghi_A           57 SGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-ETIKYNILYGKL--DAT----DEEVIKAT  129 (260)
T ss_dssp             SSHHHHHHHHTTSSCCEEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTTCT--TCC----HHHHHHHH
T ss_pred             CCHHHHHHHHhccCCCCeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc-cCHHHHHhccCC--CCC----HHHHHHHH
Confidence            5999999999999854 11 123322111   112356999999999886 599999987531  111    24456677


Q ss_pred             HHcCCCcc-----------cccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Q psy7366          76 NKFALGHY-----------SDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVI  144 (566)
Q Consensus        76 ~~~gl~~~-----------~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi  144 (566)
                      +.+++...           .++++.+|||||||||+||+||+.+|+||||||||++||+.+++.++++|++++ +|+|||
T Consensus       130 ~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~-~~~tvi  208 (260)
T 2ghi_A          130 KSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR-KNRTLI  208 (260)
T ss_dssp             HHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHT-TTSEEE
T ss_pred             HHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEE
Confidence            77766432           246788999999999999999999999999999999999999999999999985 489999


Q ss_pred             EecCChhHHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy7366         145 LTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  179 (566)
Q Consensus       145 iisH~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~  179 (566)
                      ++|||++++. .||+|++|++|+++..|+++++..
T Consensus       209 ivtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~  242 (260)
T 2ghi_A          209 IIAHRLSTIS-SAESIILLNKGKIVEKGTHKDLLK  242 (260)
T ss_dssp             EECSSGGGST-TCSEEEEEETTEEEEEECHHHHHH
T ss_pred             EEcCCHHHHH-hCCEEEEEECCEEEEECCHHHHHh
Confidence            9999999886 599999999999999999988754

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=99.97  E-value=4.5e-31  Score=258.57  Aligned_cols=162  Identities=22%  Similarity=0.298  Sum_probs=127.3

Q ss_pred             CCcchHHHHHhccccCCCccCCCCCcccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCC
Q psy7366           1 MGLTTTPKRVVTLLLTTQKVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFAL   80 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl   80 (566)
                      .||||++|+++|++.|.+   |.  .  .....|||+||++.+++. ||+||+.++..   ...    .+..+.++.+++
T Consensus        45 sGKSTLl~~l~Gl~~p~~---G~--i--~~~g~i~~v~q~~~~~~~-tv~enl~~~~~---~~~----~~~~~~~~~~~l  109 (229)
T 2pze_A           45 AGKTSLLMMIMGELEPSE---GK--I--KHSGRISFCSQFSWIMPG-TIKENIIFGVS---YDE----YRYRSVIKACQL  109 (229)
T ss_dssp             SSHHHHHHHHTTSSCCSE---EE--E--EECSCEEEECSSCCCCSB-CHHHHHHTTSC---CCH----HHHHHHHHHTTC
T ss_pred             CCHHHHHHHHhCCCcCCc---cE--E--EECCEEEEEecCCcccCC-CHHHHhhccCC---cCh----HHHHHHHHHhCc
Confidence            599999999999986654   11  0  001249999999998885 99999987531   111    122334444444


Q ss_pred             Cc-----------ccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEecC
Q psy7366          81 GH-----------YSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTC-IERAVSEGRCVILTSH  148 (566)
Q Consensus        81 ~~-----------~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~-l~~l~~~g~tviiisH  148 (566)
                      ..           ..++++.+||||||||++||+||+.+|++|||||||++||+.+++.+++. ++++. +|+|||++||
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH  188 (229)
T 2pze_A          110 EEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTS  188 (229)
T ss_dssp             HHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECC
T ss_pred             HHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcC
Confidence            32           12345689999999999999999999999999999999999999999997 45553 4899999999


Q ss_pred             ChhHHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy7366         149 NMEECEALCTKLTIMVNGQFTCLGSATHLKS  179 (566)
Q Consensus       149 ~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~  179 (566)
                      +++++. .||+|++|++|+++..|+++++..
T Consensus       189 ~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~  218 (229)
T 2pze_A          189 KMEHLK-KADKILILHEGSSYFYGTFSELQN  218 (229)
T ss_dssp             CHHHHH-HCSEEEEEETTEEEEEECHHHHHT
T ss_pred             ChHHHH-hCCEEEEEECCEEEEECCHHHHHh
Confidence            999986 499999999999999999988754

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=99.97  E-value=1.3e-31  Score=280.67  Aligned_cols=169  Identities=20%  Similarity=0.238  Sum_probs=140.5

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcc---cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI---DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNES   74 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~---~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~   74 (566)
                      +||||++|+|+|++. .+   .+.+.+...   ....+.||||||++.+|+ +||+||+.+..       ....+++.++
T Consensus        58 sGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~-------~~~~~~v~~~  128 (390)
T 3gd7_A           58 SGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNA-------AHSDQEIWKV  128 (390)
T ss_dssp             SSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTC-------CSCHHHHHHH
T ss_pred             ChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhcc-------ccCHHHHHHH
Confidence            599999999999874 22   223322111   112357999999999987 69999996432       1124677889


Q ss_pred             HHHcCCCccccccccc-----------CChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy7366          75 LNKFALGHYSDREVRT-----------LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCV  143 (566)
Q Consensus        75 l~~~gl~~~~~~~~~~-----------LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tv  143 (566)
                      ++.+||....++++.+           |||||||||+|||||+.+|+||||||||++||+..+.++.+.|+++ ..|.|+
T Consensus       129 l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~-~~~~tv  207 (390)
T 3gd7_A          129 ADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQA-FADCTV  207 (390)
T ss_dssp             HHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTT-TTTSCE
T ss_pred             HHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHH-hCCCEE
Confidence            9999999888988888           9999999999999999999999999999999999999999999986 458999


Q ss_pred             EEecCChhHHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy7366         144 ILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK  180 (566)
Q Consensus       144 iiisH~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~~  180 (566)
                      |++|||++.+ ..||||++|++|+|+..|+++++...
T Consensus       208 i~vtHd~e~~-~~aDri~vl~~G~i~~~g~~~el~~~  243 (390)
T 3gd7_A          208 ILCEARIEAM-LECDQFLVIEENKVRQYDSILELYHY  243 (390)
T ss_dssp             EEECSSSGGG-TTCSEEEEEETTEEEEESSHHHHHHC
T ss_pred             EEEEcCHHHH-HhCCEEEEEECCEEEEECCHHHHHhC
Confidence            9999998655 56999999999999999999998764

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=99.97  E-value=1.9e-30  Score=276.38  Aligned_cols=196  Identities=16%  Similarity=0.214  Sum_probs=146.7

Q ss_pred             ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCC--------------------------------------CCcc
Q psy7366         360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK--------------------------------------PTSG  401 (566)
Q Consensus       360 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--------------------------------------~~~G  401 (566)
                      .++++++|++.+| +++|+|||||||||||++|.++..                                      +.+|
T Consensus        49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~  127 (415)
T 4aby_A           49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG  127 (415)
T ss_dssp             TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred             cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence            4789999999999 999999999999999999977664                                      4578


Q ss_pred             EEEEcCccCCCc-hHH-hcCceEEEecCCCCCCCCCHHHHHHHHHHhcC----------------------CCc------
Q psy7366         402 NAYVMNHSIRDS-MDL-VRSYIGYCPQFDALNDRLTPREHLEFYSRVRN----------------------VPS------  451 (566)
Q Consensus       402 ~i~~~g~~~~~~-~~~-~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~----------------------~~~------  451 (566)
                      +++++|++++.. ... .+..+++++|+..++.. +..++..+.-....                      ...      
T Consensus       128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~  206 (415)
T 4aby_A          128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKH  206 (415)
T ss_dssp             EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred             EEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence            899999988642 223 34458999998765543 55444333211000                      000      


Q ss_pred             --------------------------------hHHHHHHHHHHHHcCCCCc-----------------------cc----
Q psy7366         452 --------------------------------VLLNTIVNESLNKFALGHY-----------------------SD----  472 (566)
Q Consensus       452 --------------------------------~~~~~~~~~~l~~~~l~~~-----------------------~~----  472 (566)
                                                      ......+.+.+..+++...                       ..    
T Consensus       207 ~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  286 (415)
T 4aby_A          207 PTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPG  286 (415)
T ss_dssp             ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSS
T ss_pred             CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCC
Confidence                                            0011223445555555320                       00    


Q ss_pred             ---cCcCc-CChhHHHHHHHHHHHcCCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCE
Q psy7366         473 ---REVRT-LSGGNKRKLSTAIALLGNP--PLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTK  546 (566)
Q Consensus       473 ---~~~~~-LSgGqkqrv~la~al~~~p--~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~dr  546 (566)
                         +++.. |||||||||+||++|+.+|  ++|||||||+|||+.++..+.+.|+++. +|.|||+||||++++ .+||+
T Consensus       287 ~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~~~-~~~d~  364 (415)
T 4aby_A          287 EELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQIA-ARAHH  364 (415)
T ss_dssp             CCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHHHH-TTCSE
T ss_pred             CcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHHHH-hhcCe
Confidence               33334 5999999999999999999  9999999999999999999999999987 589999999999776 57999


Q ss_pred             EEEE----ECCEEEEec
Q psy7366         547 LTIM----VNGQFTCLG  559 (566)
Q Consensus       547 v~~l----~~G~i~~~g  559 (566)
                      +++|    ++|+++...
T Consensus       365 i~~l~k~~~~G~~~~~~  381 (415)
T 4aby_A          365 HYKVEKQVEDGRTVSHV  381 (415)
T ss_dssp             EEEEEEEEETTEEEEEE
T ss_pred             EEEEEEeccCCceEEEE
Confidence            9999    999987653

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=99.97  E-value=4.2e-34  Score=306.56  Aligned_cols=195  Identities=14%  Similarity=0.115  Sum_probs=160.5

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCcc-E-EEEcCccCCCchHHhc
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG-N-AYVMNHSIRDSMDLVR  418 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G-~-i~~~g~~~~~~~~~~~  418 (566)
                      .+++++|+++.|+          ++||++++|++++|+||||||||||+|+|+|+++|++| + |+++|.        .+
T Consensus       117 ~mi~~~nl~~~y~----------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~--------~~  178 (460)
T 2npi_A          117 TMKYIYNLHFMLE----------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD--------PQ  178 (460)
T ss_dssp             THHHHHHHHHHHH----------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC--------TT
T ss_pred             chhhhhhhhehhh----------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC--------cc
Confidence            3577888887763          69999999999999999999999999999999999999 9 999983        24


Q ss_pred             CceEEEecCCC---CCCCCCHHHHHHHHHHh-cCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHH--H
Q psy7366         419 SYIGYCPQFDA---LNDRLTPREHLEFYSRV-RNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIA--L  492 (566)
Q Consensus       419 ~~i~~v~q~~~---l~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~a--l  492 (566)
                      +.++|+||+..   +++.+|+.||+ ++... .+..   ...++.++++.+|+.+..+  +.+|||||||||+||||  |
T Consensus       179 ~~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~---~~~~~~~ll~~~gl~~~~~--~~~LSgGq~qrlalAra~rL  252 (460)
T 2npi_A          179 QPIFTVPGCISATPISDILDAQLPT-WGQSLTSGAT---LLHNKQPMVKNFGLERINE--NKDLYLECISQLGQVVGQRL  252 (460)
T ss_dssp             SCSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCC---SSCCBCCEECCCCSSSGGG--CHHHHHHHHHHHHHHHHHHH
T ss_pred             CCeeeeccchhhcccccccchhhhh-cccccccCcc---hHHHHHHHHHHhCCCcccc--hhhhhHHHHHHHHHHHHHHh
Confidence            67999999974   34567999888 54321 1111   1123456788889887665  89999999999999999  9


Q ss_pred             cCCCCE----EEEeC-CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHH------HHHhhCCE-----EEEEE-CCEE
Q psy7366         493 LGNPPL----IFLDE-PTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME------ECEALCTK-----LTIMV-NGQF  555 (566)
Q Consensus       493 ~~~p~l----llLDE-Pt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~------~~~~~~dr-----v~~l~-~G~i  555 (566)
                      +.+|++    ||||| ||++||+. +..+.++++++   +.|+|+||||.+      ++..+|||     +++|+ +|++
T Consensus       253 ~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~---~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~i  328 (460)
T 2npi_A          253 HLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL---NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGV  328 (460)
T ss_dssp             HHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT---TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTC
T ss_pred             ccCcccCcceEEEeCCcccccChh-HHHHHHHHHHh---CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcE
Confidence            999999    99999 99999999 66666555543   789999999987      88899999     99999 9999


Q ss_pred             EEecCcccc
Q psy7366         556 TCLGSATHL  564 (566)
Q Consensus       556 ~~~g~~~~l  564 (566)
                      + .|+++++
T Consensus       329 v-~g~~~~~  336 (460)
T 2npi_A          329 S-AVDDVYK  336 (460)
T ss_dssp             C-CCCHHHH
T ss_pred             E-ECCHHHH
Confidence            9 8887654

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=99.97  E-value=9.7e-31  Score=257.47  Aligned_cols=165  Identities=19%  Similarity=0.280  Sum_probs=127.7

Q ss_pred             CCcchHHHHHhccccCCCccCCCCCcccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHH---HHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQKVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNE---SLNK   77 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~---~l~~   77 (566)
                      .||||++|+++|++.|.+   |.  .  .....||||||+|.+ +.+||+||+.++...   .... .+++.+   +++.
T Consensus        42 sGKSTLl~~l~Gl~~p~~---G~--I--~~~g~i~~v~Q~~~~-~~~tv~enl~~~~~~---~~~~-~~~~~~~~~l~~~  109 (237)
T 2cbz_A           42 CGKSSLLSALLAEMDKVE---GH--V--AIKGSVAYVPQQAWI-QNDSLRENILFGCQL---EEPY-YRSVIQACALLPD  109 (237)
T ss_dssp             SSHHHHHHHHTTCSEEEE---EE--E--EECSCEEEECSSCCC-CSEEHHHHHHTTSCC---CTTH-HHHHHHHTTCHHH
T ss_pred             CCHHHHHHHHhcCCCCCC---ce--E--EECCEEEEEcCCCcC-CCcCHHHHhhCcccc---CHHH-HHHHHHHHhhHHH
Confidence            599999999999987543   11  0  001149999999875 478999999875421   1111 112222   1222


Q ss_pred             cCCC-----cccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHH---HHHhCCCEEEEecCC
Q psy7366          78 FALG-----HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIE---RAVSEGRCVILTSHN  149 (566)
Q Consensus        78 ~gl~-----~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~---~l~~~g~tviiisH~  149 (566)
                      +++.     ...++++.+||||||||++||+||+.+|++|||||||++||+.++..+++.|.   ++ .+|+|||++|||
T Consensus       110 ~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~-~~~~tviivtH~  188 (237)
T 2cbz_A          110 LEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGM-LKNKTRILVTHS  188 (237)
T ss_dssp             HTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTST-TTTSEEEEECSC
T ss_pred             HHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhh-cCCCEEEEEecC
Confidence            3321     12578899999999999999999999999999999999999999999999995   34 358999999999


Q ss_pred             hhHHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy7366         150 MEECEALCTKLTIMVNGQFTCLGSATHLKS  179 (566)
Q Consensus       150 ~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~  179 (566)
                      ++++. .||+|++|++|+++..|+++++..
T Consensus       189 ~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~  217 (237)
T 2cbz_A          189 MSYLP-QVDVIIVMSGGKISEMGSYQELLA  217 (237)
T ss_dssp             STTGG-GSSEEEEEETTEEEEEECHHHHHH
T ss_pred             hHHHH-hCCEEEEEeCCEEEEeCCHHHHhh
Confidence            99875 699999999999999999988754

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=99.96  E-value=8.1e-30  Score=282.79  Aligned_cols=171  Identities=16%  Similarity=0.279  Sum_probs=138.7

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCc---ccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPT---IDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNES   74 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~---~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~   74 (566)
                      .||||++|+++|++-|.+   .+.|.+..   ....++.||||||+|.+++. ||+||+.++.. ...+    ++++.++
T Consensus       380 sGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~-~~~~----~~~~~~~  453 (582)
T 3b5x_A          380 SGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFND-TIANNIAYAAE-GEYT----REQIEQA  453 (582)
T ss_pred             CCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccc-cHHHHHhccCC-CCCC----HHHHHHH
Confidence            599999999999998765   23332211   11234579999999999875 99999987531 1122    3456667


Q ss_pred             HHHcCCCcc-----------cccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy7366          75 LNKFALGHY-----------SDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCV  143 (566)
Q Consensus        75 l~~~gl~~~-----------~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tv  143 (566)
                      ++.+|+.+.           .++...+||||||||++|||||+++|++|||||||++||+.+++.+.+.|+++. +|+|+
T Consensus       454 ~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tv  532 (582)
T 3b5x_A          454 ARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQ-KNKTV  532 (582)
T ss_pred             HHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEE
Confidence            777766543           344568999999999999999999999999999999999999999999999985 49999


Q ss_pred             EEecCChhHHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy7366         144 ILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  179 (566)
Q Consensus       144 iiisH~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~  179 (566)
                      |+||||++.+. .||||++|++|++++.|+++++..
T Consensus       533 i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~  567 (582)
T 3b5x_A          533 LVIAHRLSTIE-QADEILVVDEGEIIERGRHADLLA  567 (582)
T ss_pred             EEEecCHHHHH-hCCEEEEEECCEEEEECCHHHHHh
Confidence            99999999987 699999999999999999998764

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=99.96  E-value=9.9e-30  Score=282.09  Aligned_cols=172  Identities=17%  Similarity=0.261  Sum_probs=139.3

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcc---cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI---DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNES   74 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~---~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~   74 (566)
                      .||||++|+++|++-|.+   .+.|.+...   ...++.||||||+|.+++. ||+||+.++.. ...+    ++++.++
T Consensus       380 sGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~-~~~~----~~~~~~~  453 (582)
T 3b60_A          380 SGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFND-TVANNIAYART-EEYS----REQIEEA  453 (582)
T ss_dssp             SSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSS-BHHHHHHTTTT-SCCC----HHHHHHH
T ss_pred             CCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCC-CHHHHHhccCC-CCCC----HHHHHHH
Confidence            599999999999997765   233322111   1223469999999999875 99999987531 1122    3456666


Q ss_pred             HHHcCCCc-----------ccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy7366          75 LNKFALGH-----------YSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCV  143 (566)
Q Consensus        75 l~~~gl~~-----------~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tv  143 (566)
                      ++.+|+.+           ..++...+||||||||++|||||+++|++|||||||++||+.+++.+.+.|+++.+ |+|+
T Consensus       454 l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tv  532 (582)
T 3b60_A          454 ARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTS  532 (582)
T ss_dssp             HHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEE
T ss_pred             HHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEE
Confidence            76666643           33456689999999999999999999999999999999999999999999999864 9999


Q ss_pred             EEecCChhHHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy7366         144 ILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK  180 (566)
Q Consensus       144 iiisH~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~~  180 (566)
                      |+||||++.+. .||||++|++|++++.|+++++...
T Consensus       533 i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~  568 (582)
T 3b60_A          533 LVIAHRLSTIE-QADEIVVVEDGIIVERGTHSELLAQ  568 (582)
T ss_dssp             EEECSCGGGTT-TCSEEEEEETTEEEEEECHHHHHHH
T ss_pred             EEEeccHHHHH-hCCEEEEEECCEEEEecCHHHHHHc
Confidence            99999999886 6999999999999999999998653

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.96  E-value=7.6e-30  Score=282.91  Aligned_cols=175  Identities=21%  Similarity=0.291  Sum_probs=138.1

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCccc---ccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHH----
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTID---KNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTI----   70 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~~---~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~----   70 (566)
                      .||||++|++++++-|.+   .+.+.+....   ..+++||||||+|.+++. ||+||+.++...  .+..+..+.    
T Consensus       380 sGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~~--~~~~~~~~~~~~~  456 (587)
T 3qf4_A          380 SGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSG-TIKENLKWGRED--ATDDEIVEAAKIA  456 (587)
T ss_dssp             SSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSE-EHHHHHTTTCSS--CCHHHHHHHHHHT
T ss_pred             CCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCc-cHHHHHhccCCC--CCHHHHHHHHHHh
Confidence            599999999999998765   2444332211   224579999999999865 999999875321  222222211    


Q ss_pred             -HHHHHHHc--CCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEec
Q psy7366          71 -VNESLNKF--ALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTS  147 (566)
Q Consensus        71 -~~~~l~~~--gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiis  147 (566)
                       +.+.++.+  |++...++...+||||||||++|||||+++|++|||||||++||+.+.+.+.+.|+++ .+|+|+|+||
T Consensus       457 ~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~it  535 (587)
T 3qf4_A          457 QIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRY-TKGCTTFIIT  535 (587)
T ss_dssp             TCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHH-STTCEEEEEE
T ss_pred             CcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHh-CCCCEEEEEe
Confidence             12233333  4555567788999999999999999999999999999999999999999999999987 4599999999


Q ss_pred             CChhHHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy7366         148 HNMEECEALCTKLTIMVNGQFTCLGSATHLKSK  180 (566)
Q Consensus       148 H~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~~  180 (566)
                      ||++.+. .||||++|++|++++.|+++++.+.
T Consensus       536 H~l~~~~-~~d~i~vl~~G~i~~~g~~~el~~~  567 (587)
T 3qf4_A          536 QKIPTAL-LADKILVLHEGKVAGFGTHKELLEH  567 (587)
T ss_dssp             SCHHHHT-TSSEEEEEETTEEEEEECHHHHHHH
T ss_pred             cChHHHH-hCCEEEEEECCEEEEECCHHHHHhC
Confidence            9999986 7999999999999999999998653

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=99.96  E-value=2.7e-29  Score=253.84  Aligned_cols=160  Identities=19%  Similarity=0.235  Sum_probs=124.2

Q ss_pred             CCcchHHHHHhccccCCCc-cCCCCCcccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHHHcC
Q psy7366           1 MGLTTTPKRVVTLLLTTQK-VPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFA   79 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~-~~~~~~~~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g   79 (566)
                      .||||++|+++|++.|.+. +..        ...|||+||++.+++. ||+||+. +.   ....    .++.+.++.++
T Consensus        75 sGKSTLlk~l~Gl~~p~~G~I~~--------~g~i~~v~Q~~~l~~~-tv~enl~-~~---~~~~----~~~~~~~~~~~  137 (290)
T 2bbs_A           75 AGKTSLLMMIMGELEPSEGKIKH--------SGRISFCSQNSWIMPG-TIKENII-GV---SYDE----YRYRSVIKACQ  137 (290)
T ss_dssp             SSHHHHHHHHTTSSCEEEEEEEC--------CSCEEEECSSCCCCSS-BHHHHHH-TT---CCCH----HHHHHHHHHTT
T ss_pred             CcHHHHHHHHhcCCCCCCcEEEE--------CCEEEEEeCCCccCcc-cHHHHhh-Cc---ccch----HHHHHHHHHhC
Confidence            5999999999999865431 111        1149999999998875 9999997 32   1111    12334444455


Q ss_pred             CCcc-----------cccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHH-HHHHhCCCEEEEec
Q psy7366          80 LGHY-----------SDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCI-ERAVSEGRCVILTS  147 (566)
Q Consensus        80 l~~~-----------~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l-~~l~~~g~tviiis  147 (566)
                      +...           .++++.+||||||||++||+||+.+|++|||||||++||+.++..+++.+ +++. +|+|||++|
T Consensus       138 l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivt  216 (290)
T 2bbs_A          138 LEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVT  216 (290)
T ss_dssp             CHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEEC
T ss_pred             hHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEe
Confidence            4322           23456899999999999999999999999999999999999999999974 4553 589999999


Q ss_pred             CChhHHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy7366         148 HNMEECEALCTKLTIMVNGQFTCLGSATHLKS  179 (566)
Q Consensus       148 H~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~  179 (566)
                      |+++++. .||+|++|++|+++..|+++++..
T Consensus       217 Hd~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~  247 (290)
T 2bbs_A          217 SKMEHLK-KADKILILHEGSSYFYGTFSELQN  247 (290)
T ss_dssp             CCHHHHH-HSSEEEEEETTEEEEEECHHHHHH
T ss_pred             cCHHHHH-cCCEEEEEECCeEEEeCCHHHHhh
Confidence            9999886 599999999999999999988753

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.96  E-value=1.5e-29  Score=281.34  Aligned_cols=171  Identities=21%  Similarity=0.280  Sum_probs=136.2

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcc---cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI---DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNES   74 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~---~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~   74 (566)
                      .||||++|+++|++-|.+   .+.|.+...   ....++||||||+|.+++ .||+||+.++..  ..+..    ++.++
T Consensus       392 sGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~~~~--~~~~~----~~~~~  464 (598)
T 3qf4_B          392 SGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFS-TTVKENLKYGNP--GATDE----EIKEA  464 (598)
T ss_dssp             SSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCS-SBHHHHHHSSST--TCCTT----HHHHH
T ss_pred             CcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCcccc-ccHHHHHhcCCC--CCCHH----HHHHH
Confidence            599999999999998765   233332211   122457999999999986 499999987532  12222    23344


Q ss_pred             HHHcCCC-----------cccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy7366          75 LNKFALG-----------HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCV  143 (566)
Q Consensus        75 l~~~gl~-----------~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tv  143 (566)
                      ++..++.           ...+....+||||||||++|||||+++|++|||||||++||+.+.+.+.+.|+++. +|+|+
T Consensus       465 ~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~  543 (598)
T 3qf4_B          465 AKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTS  543 (598)
T ss_dssp             TTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEE
T ss_pred             HHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEE
Confidence            4444443           33345567999999999999999999999999999999999999999999999985 59999


Q ss_pred             EEecCChhHHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy7366         144 ILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK  180 (566)
Q Consensus       144 iiisH~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~~  180 (566)
                      |+||||++.+.. ||||++|++|++++.|+++++.+.
T Consensus       544 i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~  579 (598)
T 3qf4_B          544 IIIAHRLNTIKN-ADLIIVLRDGEIVEMGKHDELIQK  579 (598)
T ss_dssp             EEESCCTTHHHH-CSEEEEECSSSEEECSCHHHHHHT
T ss_pred             EEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHHhC
Confidence            999999999976 999999999999999999998653

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=99.96  E-value=1.9e-29  Score=279.46  Aligned_cols=171  Identities=23%  Similarity=0.300  Sum_probs=136.5

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcc---cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI---DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNES   74 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~---~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~   74 (566)
                      .||||++|+++|++-|.+   .+.|.+...   ....+.||||||+|.+++. ||+||+.++...  ..    .+++.+.
T Consensus       378 sGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~~~--~~----~~~~~~~  450 (578)
T 4a82_A          378 GGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGRPT--AT----DEEVVEA  450 (578)
T ss_dssp             SSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGCSS--CC----HHHHHHH
T ss_pred             ChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCCCC--CC----HHHHHHH
Confidence            599999999999997765   233332211   1223579999999999876 999999875321  11    2334445


Q ss_pred             HHHcCC-----------CcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy7366          75 LNKFAL-----------GHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCV  143 (566)
Q Consensus        75 l~~~gl-----------~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tv  143 (566)
                      ++..++           +...+....+||||||||++|||||+++|++|||||||++||+.+.+.+.+.|+++ .+|+|+
T Consensus       451 ~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~-~~~~t~  529 (578)
T 4a82_A          451 AKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVL-SKDRTT  529 (578)
T ss_dssp             HHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHH-TTTSEE
T ss_pred             HHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHH-cCCCEE
Confidence            554444           33345666799999999999999999999999999999999999999999999987 458999


Q ss_pred             EEecCChhHHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy7366         144 ILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK  180 (566)
Q Consensus       144 iiisH~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~~  180 (566)
                      |+||||++.+.. ||||++|++|++++.|+++++.+.
T Consensus       530 i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~el~~~  565 (578)
T 4a82_A          530 LIVAHRLSTITH-ADKIVVIENGHIVETGTHRELIAK  565 (578)
T ss_dssp             EEECSSGGGTTT-CSEEEEEETTEEEEEECHHHHHHT
T ss_pred             EEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHHhC
Confidence            999999999865 999999999999999999998654

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=99.96  E-value=2.3e-28  Score=255.66  Aligned_cols=85  Identities=20%  Similarity=0.346  Sum_probs=79.9

Q ss_pred             ccCcCcCChhHHHHHHHHHHHc------CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCC
Q psy7366         472 DREVRTLSGGNKRKLSTAIALL------GNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCT  545 (566)
Q Consensus       472 ~~~~~~LSgGqkqrv~la~al~------~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~d  545 (566)
                      ++++.+|||||||||+||+||+      .+|++|||||||+|||+.++..++++|+++.++|.|||+||||+++ ...||
T Consensus       274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~-~~~~d  352 (365)
T 3qf7_A          274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF-SEAFD  352 (365)
T ss_dssp             EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH-HTTCS
T ss_pred             CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH-HHhCC
Confidence            5789999999999999999999      7999999999999999999999999999998889999999999998 56799


Q ss_pred             EEEEEECCEEEE
Q psy7366         546 KLTIMVNGQFTC  557 (566)
Q Consensus       546 rv~~l~~G~i~~  557 (566)
                      ++++|++|++++
T Consensus       353 ~~~~l~~G~i~~  364 (365)
T 3qf7_A          353 RKLRITGGVVVN  364 (365)
T ss_dssp             CEEEEETTEEC-
T ss_pred             EEEEEECCEEEe
Confidence            999999999875

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.95  E-value=8.1e-32  Score=259.64  Aligned_cols=155  Identities=14%  Similarity=0.133  Sum_probs=105.5

Q ss_pred             CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHH
Q psy7366         358 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPR  437 (566)
Q Consensus       358 ~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~  437 (566)
                      ++.+|+++    ++||+++|+||||||||||+++|+|+ +|++|+|..  .++.......++.+||+||++        .
T Consensus        12 ~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~--~~~~~~~~~~~~~ig~v~q~~--------~   76 (208)
T 3b85_A           12 QKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSR--IILTRPAVEAGEKLGFLPGTL--------N   76 (208)
T ss_dssp             HHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSE--EEEEECSCCTTCCCCSSCC-----------
T ss_pred             HHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeee--EEecCCchhhhcceEEecCCH--------H
Confidence            45688885    89999999999999999999999999 999999943  222111112456799999986        3


Q ss_pred             HHH-HHH----HHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHH
Q psy7366         438 EHL-EFY----SRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGA  512 (566)
Q Consensus       438 e~l-~~~----~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~  512 (566)
                      ||+ .+.    ........   ...+.++++. ++             ||||||+|||||+.+|++|||||||+|    +
T Consensus        77 enl~~~~~~~~~~~~~~~~---~~~~~~~l~~-gl-------------Gq~qrv~lAraL~~~p~lllLDEPts~----~  135 (208)
T 3b85_A           77 EKIDPYLRPLHDALRDMVE---PEVIPKLMEA-GI-------------VEVAPLAYMRGRTLNDAFVILDEAQNT----T  135 (208)
T ss_dssp             ---CTTTHHHHHHHTTTSC---TTHHHHHHHT-TS-------------EEEEEGGGGTTCCBCSEEEEECSGGGC----C
T ss_pred             HHHHHHHHHHHHHHHHhcc---HHHHHHHHHh-CC-------------chHHHHHHHHHHhcCCCEEEEeCCccc----c
Confidence            333 221    11111111   1235566654 33             999999999999999999999999999    8


Q ss_pred             HHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCE
Q psy7366         513 RRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ  554 (566)
Q Consensus       513 ~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~  554 (566)
                      +..++++|+++ ++|.||| +|||++++..    ....++|.
T Consensus       136 ~~~l~~~l~~l-~~g~tii-vtHd~~~~~~----~~~~~~G~  171 (208)
T 3b85_A          136 PAQMKMFLTRL-GFGSKMV-VTGDITQVDL----PGGQKSGL  171 (208)
T ss_dssp             HHHHHHHHTTB-CTTCEEE-EEEC----------------CC
T ss_pred             HHHHHHHHHHh-cCCCEEE-EECCHHHHhC----cCCCCCcH
Confidence            99999999988 6689999 9999987654    34456664

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.94  E-value=2.7e-27  Score=243.71  Aligned_cols=84  Identities=25%  Similarity=0.287  Sum_probs=74.4

Q ss_pred             ccccCcCcCChhHHHHHHHHHHHc----CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCC
Q psy7366         470 YSDREVRTLSGGNKRKLSTAIALL----GNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCT  545 (566)
Q Consensus       470 ~~~~~~~~LSgGqkqrv~la~al~----~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~d  545 (566)
                      ..++++.+||+|||||++||++|+    .+|++|||||||++||+..+..+.++|+++. +|.+||++||+. ++..+||
T Consensus       212 ~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~-~~~~~~d  289 (322)
T 1e69_A          212 RRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNK-IVMEAAD  289 (322)
T ss_dssp             SCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCT-TGGGGCS
T ss_pred             cccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCH-HHHhhCc
Confidence            356788999999999999999997    6899999999999999999999999999984 588999999996 4567899


Q ss_pred             EE--EEEECCEE
Q psy7366         546 KL--TIMVNGQF  555 (566)
Q Consensus       546 rv--~~l~~G~i  555 (566)
                      ++  ++|.+|..
T Consensus       290 ~~~~v~~~~g~s  301 (322)
T 1e69_A          290 LLHGVTMVNGVS  301 (322)
T ss_dssp             EEEEEEESSSCE
T ss_pred             eEEEEEEeCCEE
Confidence            87  78888764

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.94  E-value=4.9e-28  Score=226.31  Aligned_cols=147  Identities=16%  Similarity=0.105  Sum_probs=105.5

Q ss_pred             eeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCC-CCCCCHHHHHHH
Q psy7366         364 QISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDAL-NDRLTPREHLEF  442 (566)
Q Consensus       364 ~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l-~~~~tv~e~l~~  442 (566)
                      |+||+|++||+++|+||||||||||+|++.+      |...+.+       ..+   .++++|++.- ...-++.+++. 
T Consensus         1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~~~~-------d~~---~g~~~~~~~~~~~~~~~~~~~~-   63 (171)
T 4gp7_A            1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEVISS-------DFC---RGLMSDDENDQTVTGAAFDVLH-   63 (171)
T ss_dssp             CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGEEEH-------HHH---HHHHCSSTTCGGGHHHHHHHHH-
T ss_pred             CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeEEcc-------HHH---HHHhcCcccchhhHHHHHHHHH-
Confidence            6899999999999999999999999999653      2222221       111   2567776531 10001112111 


Q ss_pred             HHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHH-----------
Q psy7366         443 YSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPG-----------  511 (566)
Q Consensus       443 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~-----------  511 (566)
                                   ... ......+.....+ .....|+|||||++||||++.+|++|+|||||++||+.           
T Consensus        64 -------------~~~-~~~~~~g~~~~~~-~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~  128 (171)
T 4gp7_A           64 -------------YIV-SKRLQLGKLTVVD-ATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEE  128 (171)
T ss_dssp             -------------HHH-HHHHHTTCCEEEE-SCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCH
T ss_pred             -------------HHH-HHHHhCCCeEEEE-CCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCH
Confidence                         111 1122334443333 33456999999999999999999999999999999999           


Q ss_pred             -----HHHHHHHHHHHHHhCCcEEEEEccCHHHHHh
Q psy7366         512 -----ARRFLWTCIERAVSEGRCVILTSHNMEECEA  542 (566)
Q Consensus       512 -----~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~  542 (566)
                           .+..+++.|++++++|.|+|++|||++++..
T Consensus       129 ~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~  164 (171)
T 4gp7_A          129 YVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEE  164 (171)
T ss_dssp             HHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHH
T ss_pred             HHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhh
Confidence                 6688999998887779999999999999876

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.93  E-value=2.7e-29  Score=264.80  Aligned_cols=170  Identities=17%  Similarity=0.124  Sum_probs=140.5

Q ss_pred             cceeeeeeEEEeCCc--------------------EEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhc
Q psy7366         359 KPAVNQISFGVGRGE--------------------CFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR  418 (566)
Q Consensus       359 ~~~l~~isl~i~~Ge--------------------~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~  418 (566)
                      +.+|+++||+|++|+                    ++||+||||||||||+|+|+|+++|++|+|.++|.+++      +
T Consensus        36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t------~  109 (413)
T 1tq4_A           36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT------M  109 (413)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----------C
T ss_pred             HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc------e
Confidence            468999999999999                    99999999999999999999999999999999987653      1


Q ss_pred             CceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChh--HHHHHHHHHHHcC--
Q psy7366         419 SYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGG--NKRKLSTAIALLG--  494 (566)
Q Consensus       419 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG--qkqrv~la~al~~--  494 (566)
                        .+|++|++ .++.+|+.||+.+..     .    ...+.++++.+++.+. +..+. ||+|  |+||+.||++|+.  
T Consensus       110 --~~~v~q~~-~~~~ltv~D~~g~~~-----~----~~~~~~~L~~~~L~~~-~~~~~-lS~G~~~kqrv~la~aL~~~~  175 (413)
T 1tq4_A          110 --ERHPYKHP-NIPNVVFWDLPGIGS-----T----NFPPDTYLEKMKFYEY-DFFII-ISATRFKKNDIDIAKAISMMK  175 (413)
T ss_dssp             --CCEEEECS-SCTTEEEEECCCGGG-----S----SCCHHHHHHHTTGGGC-SEEEE-EESSCCCHHHHHHHHHHHHTT
T ss_pred             --eEEecccc-ccCCeeehHhhcccc-----h----HHHHHHHHHHcCCCcc-CCeEE-eCCCCccHHHHHHHHHHHhcC
Confidence              27899985 467788888764431     1    1236788999998754 33444 9999  9999999999999  


Q ss_pred             --------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-----hCC----cEEEEEccCHHH--HHhhCCEEE
Q psy7366         495 --------NPPLIFLDEPTSGMDPGARRFLWTCIERAV-----SEG----RCVILTSHNMEE--CEALCTKLT  548 (566)
Q Consensus       495 --------~p~lllLDEPt~gLD~~~~~~l~~~l~~~~-----~~g----~tvl~vsHd~~~--~~~~~drv~  548 (566)
                              +|++++|||||+|||+.++..+++.|+++.     +.|    .+|+++||+++.  +..+||++.
T Consensus       176 ~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~  248 (413)
T 1tq4_A          176 KEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI  248 (413)
T ss_dssp             CEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred             CCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence                    999999999999999999999999999884     332    678899999987  888898874

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=99.93  E-value=5.8e-30  Score=246.85  Aligned_cols=178  Identities=13%  Similarity=0.044  Sum_probs=124.3

Q ss_pred             CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHH
Q psy7366         358 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPR  437 (566)
Q Consensus       358 ~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~  437 (566)
                      ..++++|  .+|++|++++|+||||||||||+|+|+|+++...+.+.+.+.+.   ....++.++|+||++.+|+.+|+.
T Consensus         8 ~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~---~~~~~~~i~~~~q~~~~~~~~~~~   82 (207)
T 1znw_A            8 TKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAP---RPGEVDGVDYHFIDPTRFQQLIDQ   82 (207)
T ss_dssp             -------------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCC---CTTCCBTTTBEECCHHHHHHHHHT
T ss_pred             CCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCC---cccccCCCeeEecCHHHHHHHHhc
Confidence            3457787  79999999999999999999999999999963333222222111   112346799999998777777776


Q ss_pred             HHHHHH----H--HhcCCCchHHHHHHHHH------HHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCC
Q psy7366         438 EHLEFY----S--RVRNVPSVLLNTIVNES------LNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPT  505 (566)
Q Consensus       438 e~l~~~----~--~~~~~~~~~~~~~~~~~------l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt  505 (566)
                      +++...    .  ..++.+....++++.+.      ++.+++....++++.+||           +|+.+|++++|||||
T Consensus        83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS-----------~l~~~p~~~~LDep~  151 (207)
T 1znw_A           83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVT-----------VFLAPPSWQDLQARL  151 (207)
T ss_dssp             TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEE-----------EEEECSCHHHHHHHH
T ss_pred             CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEE-----------EEEECCCHHHHHHHH
Confidence            665321    1  12233333344445554      555666566677888888           899999999999999


Q ss_pred             CCC----CHHHHHHHHHHHHHHHh-CCcEEEEEccCHHHHHhhCCEEEEEE
Q psy7366         506 SGM----DPGARRFLWTCIERAVS-EGRCVILTSHNMEECEALCTKLTIMV  551 (566)
Q Consensus       506 ~gL----D~~~~~~l~~~l~~~~~-~g~tvl~vsHd~~~~~~~~drv~~l~  551 (566)
                      +++    |+..+..++++++++.+ .|.|+|++|||++++..+|||+++|.
T Consensus       152 ~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~  202 (207)
T 1znw_A          152 IGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT  202 (207)
T ss_dssp             HTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred             HhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence            998    78899999999999975 48999999999999999999999984

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=99.93  E-value=3.6e-27  Score=221.81  Aligned_cols=147  Identities=11%  Similarity=0.036  Sum_probs=108.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCch-HHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCch
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM-DLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSV  452 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~  452 (566)
                      +++|+||||||||||+++|+|++.     |.++|.+..... ...++++||++|++.      +.+++ + ... ..   
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~~------~~~~~-~-~~~-~~---   64 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITTE------GKKKI-F-SSK-FF---   64 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEETT------CCEEE-E-EET-TC---
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecCc------HHHHH-H-Hhh-cC---
Confidence            689999999999999999999985     445554432111 134567999999862      22222 0 000 00   


Q ss_pred             HHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHH-----HcCCCCEEEEeC--CCCCCCHHHHHHHHHHHHHHHh
Q psy7366         453 LLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIA-----LLGNPPLIFLDE--PTSGMDPGARRFLWTCIERAVS  525 (566)
Q Consensus       453 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~a-----l~~~p~lllLDE--Pt~gLD~~~~~~l~~~l~~~~~  525 (566)
                                   .-....++++.+||||||||++||+|     ++.+|++|||||  ||++||+..++.+.+.+++   
T Consensus        65 -------------~~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~---  128 (178)
T 1ye8_A           65 -------------TSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD---  128 (178)
T ss_dssp             -------------CCSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC---
T ss_pred             -------------CccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc---
Confidence                         00135678899999999999999996     999999999999  9999999999999888765   


Q ss_pred             CCcEEEEEc---cCHHHHHhhCCEEEEEECCEEEE
Q psy7366         526 EGRCVILTS---HNMEECEALCTKLTIMVNGQFTC  557 (566)
Q Consensus       526 ~g~tvl~vs---Hd~~~~~~~~drv~~l~~G~i~~  557 (566)
                      .+.|+|++|   ||.+++..+|+|    .+|++.+
T Consensus       129 ~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~  159 (178)
T 1ye8_A          129 PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE  159 (178)
T ss_dssp             TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred             CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence            367788888   599999999998    3455544

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=99.92  E-value=4.1e-27  Score=239.53  Aligned_cols=175  Identities=14%  Similarity=0.136  Sum_probs=143.7

Q ss_pred             eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCch-----HHh--cCceEEEecCCC-CCCC
Q psy7366         362 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM-----DLV--RSYIGYCPQFDA-LNDR  433 (566)
Q Consensus       362 l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~-----~~~--~~~i~~v~q~~~-l~~~  433 (566)
                      ++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++....     ..+  +.+++|++|++. +++.
T Consensus        90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~  169 (302)
T 3b9q_A           90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA  169 (302)
T ss_dssp             CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred             ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence            45789999999999999999999999999999999999999999999886531     122  457999999988 8888


Q ss_pred             CCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCC--EEEEeCCCCCCCHH
Q psy7366         434 LTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPP--LIFLDEPTSGMDPG  511 (566)
Q Consensus       434 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~--lllLDEPt~gLD~~  511 (566)
                      +|++||+.+... .+..        ..+++.+|+.+..++++.+||   |||++||||++.+|+  +|+|| ||+|||+.
T Consensus       170 ~~v~e~l~~~~~-~~~d--------~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~  236 (302)
T 3b9q_A          170 TVLSKAVKRGKE-EGYD--------VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNML  236 (302)
T ss_dssp             HHHHHHHHHHHH-TTCS--------EEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGH
T ss_pred             HHHHHHHHHHHH-cCCc--------chHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHH
Confidence            999999987532 1111        134667788777788899999   999999999999999  99999 99999998


Q ss_pred             HHHHHHHHHHHHHh-CCcEEEEEcc---------CHHHHHhhCCEEEEEECCEE
Q psy7366         512 ARRFLWTCIERAVS-EGRCVILTSH---------NMEECEALCTKLTIMVNGQF  555 (566)
Q Consensus       512 ~~~~l~~~l~~~~~-~g~tvl~vsH---------d~~~~~~~~drv~~l~~G~i  555 (566)
                      .+      ++++.+ .|.|+|++||         .++.+...++.|.++..|+.
T Consensus       237 ~~------~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~  284 (302)
T 3b9q_A          237 PQ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA  284 (302)
T ss_dssp             HH------HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred             HH------HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence            65      244543 4899999999         66777788899999999974

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=99.91  E-value=6.9e-26  Score=234.79  Aligned_cols=174  Identities=14%  Similarity=0.142  Sum_probs=144.2

Q ss_pred             eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCch-----HH--hcCceEEEecCCC-CCCCC
Q psy7366         363 NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM-----DL--VRSYIGYCPQFDA-LNDRL  434 (566)
Q Consensus       363 ~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~-----~~--~~~~i~~v~q~~~-l~~~~  434 (566)
                      .++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++....     ..  .+.+++|++|++. +++..
T Consensus       148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~  227 (359)
T 2og2_A          148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT  227 (359)
T ss_dssp             CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred             CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence            4688999999999999999999999999999999999999999999886521     11  2457999999988 88888


Q ss_pred             CHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCC--EEEEeCCCCCCCHHH
Q psy7366         435 TPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPP--LIFLDEPTSGMDPGA  512 (566)
Q Consensus       435 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~--lllLDEPt~gLD~~~  512 (566)
                      ++++|+.+... .+..        ..+++.+|+.+..++++.+||   |||++|||+++.+|+  +|+|| ||+|||+.+
T Consensus       228 tv~e~l~~~~~-~~~d--------~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~  294 (359)
T 2og2_A          228 VLSKAVKRGKE-EGYD--------VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLP  294 (359)
T ss_dssp             HHHHHHHHHHH-TTCS--------EEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHH
T ss_pred             hHHHHHHHHHh-CCCH--------HHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHH
Confidence            99999987542 1111        134567788777788899999   999999999999999  99999 999999986


Q ss_pred             HHHHHHHHHHHHh-CCcEEEEEcc---------CHHHHHhhCCEEEEEECCEE
Q psy7366         513 RRFLWTCIERAVS-EGRCVILTSH---------NMEECEALCTKLTIMVNGQF  555 (566)
Q Consensus       513 ~~~l~~~l~~~~~-~g~tvl~vsH---------d~~~~~~~~drv~~l~~G~i  555 (566)
                      +.      +++.+ .|.|+|++||         .+..+...+..|.++..|+.
T Consensus       295 ~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~  341 (359)
T 2og2_A          295 QA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA  341 (359)
T ss_dssp             HH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred             HH------HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence            53      34443 4899999999         46677778899999999974

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.91  E-value=4.5e-24  Score=242.34  Aligned_cols=127  Identities=24%  Similarity=0.392  Sum_probs=110.5

Q ss_pred             CCCHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCCCc-ccccccccCChhHHHHHHHHHHHhCCC---CEEEeeCCCCCC
Q psy7366          46 RLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGH-YSDREVRTLSGGNKRKLSTAIALLGNP---PLIFLDEPTSGM  121 (566)
Q Consensus        46 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgG~kqrl~iA~al~~~p---~vLlLDEPt~~L  121 (566)
                      .+||.|++.|+..   .  .. ..++.++++.+||.. .+++++.+|||||||||+||++|+.+|   +||||||||+||
T Consensus       806 ~ltv~e~l~~~~~---~--~~-~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGL  879 (972)
T 2r6f_A          806 DMTVEDALDFFAS---I--PK-IKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGL  879 (972)
T ss_dssp             TSBHHHHHHHTCS---C--HH-HHHHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTC
T ss_pred             hcCHHHHHHHHhc---c--hh-HHHHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCC
Confidence            3577777776432   1  11 234578999999987 789999999999999999999999865   999999999999


Q ss_pred             CHHHHHHHHHHHHHHHhCCCEEEEecCChhHHHhhcCEEEEE------eCCEEEEecChhHHHh
Q psy7366         122 DPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIM------VNGQFTCLGSATHLKS  179 (566)
Q Consensus       122 D~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~~~d~i~vl------~~G~i~~~g~~~~~~~  179 (566)
                      |+.+++.|+++|++++++|.|||+||||++++ ..||||++|      ++|+++..|+++++..
T Consensus       880 D~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i-~~aDrIivL~p~gG~~~G~Iv~~g~~~el~~  942 (972)
T 2r6f_A          880 HVDDIARLLDVLHRLVDNGDTVLVIEHNLDVI-KTADYIIDLGPEGGDRGGQIVAVGTPEEVAE  942 (972)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEEEECSSSTTSCCSEEEEESHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEEEEEcCCCCCCCCEEEEecCHHHHHh
Confidence            99999999999999988899999999999997 579999999      7899999999998754

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.91  E-value=9.1e-24  Score=241.50  Aligned_cols=127  Identities=26%  Similarity=0.386  Sum_probs=111.9

Q ss_pred             CCHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCCCc-ccccccccCChhHHHHHHHHHHHhCCC---CEEEeeCCCCCCC
Q psy7366          47 LTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGH-YSDREVRTLSGGNKRKLSTAIALLGNP---PLIFLDEPTSGMD  122 (566)
Q Consensus        47 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgG~kqrl~iA~al~~~p---~vLlLDEPt~~LD  122 (566)
                      +||.|++.|+...      ....++.++|+.+||.. .+++++.+|||||||||+||+||+.+|   +||||||||+|||
T Consensus       767 ~tv~eal~f~~~~------~~~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD  840 (916)
T 3pih_A          767 MTVDEALEFFKNI------PSIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLH  840 (916)
T ss_dssp             SBHHHHHHHTTTC------HHHHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCC
T ss_pred             CCHHHHHHHHhcc------hhHHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCC
Confidence            6788888775321      12356778999999986 468999999999999999999999875   7999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCCCEEEEecCChhHHHhhcCEEEEE------eCCEEEEecChhHHHhh
Q psy7366         123 PGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIM------VNGQFTCLGSATHLKSK  180 (566)
Q Consensus       123 ~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~~~d~i~vl------~~G~i~~~g~~~~~~~~  180 (566)
                      +.+++.|+++|++++++|.|||+||||++++.. ||+|++|      ++|+|++.|+++++...
T Consensus       841 ~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~-ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~  903 (916)
T 3pih_A          841 FEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKN-ADHIIDLGPEGGKEGGYIVATGTPEEIAKN  903 (916)
T ss_dssp             HHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTT-CSEEEEEESSSGGGCCEEEEEESHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh-CCEEEEecCCCCCCCCEEEEEcCHHHHHhC
Confidence            999999999999998889999999999999865 9999999      89999999999998653

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=99.90  E-value=1.5e-27  Score=254.33  Aligned_cols=194  Identities=16%  Similarity=0.192  Sum_probs=156.4

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCc---cCCCc----
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH---SIRDS----  413 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~---~~~~~----  413 (566)
                      .+++++++++.|+.   +..+|+++ |+|.+|++++|+||||||||||+++|+|+.+|+.|.|.++|+   ++...    
T Consensus       130 ~~l~~~~v~~~~~t---g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~  205 (438)
T 2dpy_A          130 NPLQRTPIEHVLDT---GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENI  205 (438)
T ss_dssp             CTTTSCCCCSBCCC---SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTT
T ss_pred             CceEEeccceecCC---CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhh
Confidence            45788999998852   35699999 999999999999999999999999999999999999999998   44321    


Q ss_pred             --hHHhcCceEEEecC-CCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHH
Q psy7366         414 --MDLVRSYIGYCPQF-DALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAI  490 (566)
Q Consensus       414 --~~~~~~~i~~v~q~-~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~  490 (566)
                        ...+++.++|++|+ ..+++.+++.+|+.+.........             -...... ..+..||+|| |||+|| 
T Consensus       206 ~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~-------------~~v~~~l-d~l~~lS~g~-qrvslA-  269 (438)
T 2dpy_A          206 LGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRG-------------QHVLLIM-DSLTRYAMAQ-REIALA-  269 (438)
T ss_dssp             THHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTT-------------CEEEEEE-ECHHHHHHHH-HHHHHH-
T ss_pred             ccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCC-------------CCHHHHH-HhHHHHHHHH-HHHHHH-
Confidence              23456789999995 556677889998876543221000             0011112 2378899999 999999 


Q ss_pred             HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---C-Cc-----EEEEEccCHHHHHhhCCEEEEEECCEEEEecCc
Q psy7366         491 ALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS---E-GR-----CVILTSHNMEECEALCTKLTIMVNGQFTCLGSA  561 (566)
Q Consensus       491 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~---~-g~-----tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~  561 (566)
                        +.+|++      |+|||+..+..+.+++.++.+   + |.     ||+++|||++  ..+||++++|.+|+++.++++
T Consensus       270 --l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~iad~v~~l~dG~Ivl~~~~  339 (438)
T 2dpy_A          270 --IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ--DPIADSARAILDGHIVLSRRL  339 (438)
T ss_dssp             --TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC--CHHHHHHHHHSSEEEEECHHH
T ss_pred             --hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc--chhhceEEEEeCcEEEEeCCH
Confidence              888888      999999999999999999866   3 64     9999999998  678999999999999999987


Q ss_pred             ccc
Q psy7366         562 THL  564 (566)
Q Consensus       562 ~~l  564 (566)
                      .++
T Consensus       340 ~~~  342 (438)
T 2dpy_A          340 AEA  342 (438)
T ss_dssp             HHT
T ss_pred             HHc
Confidence            665

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=99.90  E-value=6.7e-29  Score=251.65  Aligned_cols=162  Identities=14%  Similarity=0.151  Sum_probs=126.2

Q ss_pred             EEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceE
Q psy7366         343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIG  422 (566)
Q Consensus       343 l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~  422 (566)
                      |+++|+++.|+     .++|+++||+|++|++++|+||||||||||+++|+|++   +|+|.                 +
T Consensus       102 i~~~~vs~~y~-----~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~-----------------~  156 (305)
T 2v9p_A          102 FNYQNIELITF-----INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVL-----------------S  156 (305)
T ss_dssp             HHHTTCCHHHH-----HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEE-----------------C
T ss_pred             EEEEEEEEEcC-----hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEE-----------------E
Confidence            67789998884     46899999999999999999999999999999999999   79883                 4


Q ss_pred             EEecCCCCCCCCCHHH-HHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEE
Q psy7366         423 YCPQFDALNDRLTPRE-HLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFL  501 (566)
Q Consensus       423 ~v~q~~~l~~~~tv~e-~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllL  501 (566)
                      |++|++.+|.. |+++ |+.+...   ..     ..+.+.++.+ +...++  ...||||||||   ||||+.+|+||| 
T Consensus       157 ~v~q~~~lf~~-ti~~~ni~~~~~---~~-----~~~~~~i~~~-L~~gld--g~~LSgGqkQR---ARAll~~p~iLl-  220 (305)
T 2v9p_A          157 FANHKSHFWLA-SLADTRAALVDD---AT-----HACWRYFDTY-LRNALD--GYPVSIDRKHK---AAVQIKAPPLLV-  220 (305)
T ss_dssp             GGGTTSGGGGG-GGTTCSCEEEEE---EC-----HHHHHHHHHT-TTGGGG--TCCEECCCSSC---CCCEECCCCEEE-
T ss_pred             EecCccccccc-cHHHHhhccCcc---cc-----HHHHHHHHHH-hHccCC--ccCcCHHHHHH---HHHHhCCCCEEE-
Confidence            56777766653 6665 6654210   11     1234555554 444444  78999999999   999999999999 


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         502 DEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       502 DEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                         |++||+.+...+..              +||+++.+ ..||+| +|++|++++.|+++++
T Consensus       221 ---Ts~LD~~~~~~i~~--------------ltH~~~~~-~~aD~i-vl~~G~iv~~g~~~el  264 (305)
T 2v9p_A          221 ---TSNIDVQAEDRYLY--------------LHSRVQTF-RFEQPC-TDESGEQPFNITDADW  264 (305)
T ss_dssp             ---EESSCSTTCGGGGG--------------GTTTEEEE-ECCCCC-CCC---CCCCCCHHHH
T ss_pred             ---ECCCCHHHHHHHHH--------------HhCCHHHH-HhCCEE-EEeCCEEEEeCCHHHH
Confidence               99999999888752              19998765 579999 9999999999988765

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.89  E-value=6.9e-23  Score=232.43  Aligned_cols=110  Identities=24%  Similarity=0.356  Sum_probs=103.1

Q ss_pred             HHHHHHHHHcCCCc-ccccccccCChhHHHHHHHHHHHhCC---CCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Q psy7366          69 TIVNESLNKFALGH-YSDREVRTLSGGNKRKLSTAIALLGN---PPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVI  144 (566)
Q Consensus        69 ~~~~~~l~~~gl~~-~~~~~~~~LSgG~kqrl~iA~al~~~---p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi  144 (566)
                      +++.++++.+||.. .+++++.+|||||||||+||++|+.+   |+||||||||+|||+..++.++++|++++++|.|||
T Consensus       708 ~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVI  787 (842)
T 2vf7_A          708 FRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVI  787 (842)
T ss_dssp             HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence            46789999999987 46999999999999999999999996   799999999999999999999999999988899999


Q ss_pred             EecCChhHHHhhcCEEEEE------eCCEEEEecChhHHHh
Q psy7366         145 LTSHNMEECEALCTKLTIM------VNGQFTCLGSATHLKS  179 (566)
Q Consensus       145 iisH~~~~~~~~~d~i~vl------~~G~i~~~g~~~~~~~  179 (566)
                      +||||++++ ..||||++|      ++|++++.|+++++..
T Consensus       788 visHdl~~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~~  827 (842)
T 2vf7_A          788 AVEHKMQVV-AASDWVLDIGPGAGEDGGRLVAQGTPAEVAQ  827 (842)
T ss_dssp             EECCCHHHH-TTCSEEEEECSSSGGGCCSEEEEECHHHHTT
T ss_pred             EEcCCHHHH-HhCCEEEEECCCCCCCCCEEEEEcCHHHHHh
Confidence            999999999 789999999      7999999999998754

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=99.88  E-value=2.6e-27  Score=230.28  Aligned_cols=179  Identities=11%  Similarity=0.057  Sum_probs=120.9

Q ss_pred             cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc--hHHhcCceEEEecCCCCCCCCCH
Q psy7366         359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS--MDLVRSYIGYCPQFDALNDRLTP  436 (566)
Q Consensus       359 ~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~--~~~~~~~i~~v~q~~~l~~~~tv  436 (566)
                      ...|+|+||+|++|++++|+||||||||||+++|+|++ |  |+|.+ |.++...  ....+..++|+||++.+|+.++.
T Consensus        10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   85 (218)
T 1z6g_A           10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLK   85 (218)
T ss_dssp             ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHH
T ss_pred             cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhh
Confidence            45799999999999999999999999999999999999 5  99999 7765321  11234679999998765543321


Q ss_pred             -HHHHH---HHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHH-----HHHHcCCCCEEEEeCCCCC
Q psy7366         437 -REHLE---FYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLST-----AIALLGNPPLIFLDEPTSG  507 (566)
Q Consensus       437 -~e~l~---~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~l-----a~al~~~p~lllLDEPt~g  507 (566)
                       .+++.   +....++.+    ...+.++++...+. ..+   .+|||||+||++|     +++++.+|++++|||||++
T Consensus        86 ~~~~l~~~~~~~~~~g~~----~~~i~~~l~~~~~~-il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~  157 (218)
T 1z6g_A           86 NEDFLEYDNYANNFYGTL----KSEYDKAKEQNKIC-LFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLT  157 (218)
T ss_dssp             TTCEEEEEEETTEEEEEE----HHHHHHHHHTTCEE-EEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHH
T ss_pred             ccchhhhhhcccccCCCc----HHHHHHHHhCCCcE-EEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHh
Confidence             11111   011111211    22355666653321 112   5799999999999     8999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHh-------CCcEEEEEccCHHHHHhhCCEEEE
Q psy7366         508 MDPGARRFLWTCIERAVS-------EGRCVILTSHNMEECEALCTKLTI  549 (566)
Q Consensus       508 LD~~~~~~l~~~l~~~~~-------~g~tvl~vsHd~~~~~~~~drv~~  549 (566)
                      +|..+...+.+.+.++.+       .....|+++||++++...+++++.
T Consensus       158 ~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~~ii~  206 (218)
T 1z6g_A          158 RNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLKNYLL  206 (218)
T ss_dssp             TCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHHHHHH
Confidence            999988888888876532       457889999999999888777653

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.88  E-value=5.1e-26  Score=249.32  Aligned_cols=181  Identities=18%  Similarity=0.168  Sum_probs=133.7

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeE-EEeCCcEEEEEcCCCCcHHHHHHH--HHCCCCCCccEEEEcCccCCCchHHhc
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISF-GVGRGECFGLLGLNGAGKTTTFKM--LTGAIKPTSGNAYVMNHSIRDSMDLVR  418 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl-~i~~Ge~~~l~G~NGsGKSTLl~~--i~G~~~~~~G~i~~~g~~~~~~~~~~~  418 (566)
                      +++.+++.+..+    +.++|++++| .|++|++++|+||||||||||+++  ++|+++|++|.|+++|++........+
T Consensus        12 ~~~~~~~~~~~~----g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~   87 (525)
T 1tf7_A           12 NSEHQAIAKMRT----MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNA   87 (525)
T ss_dssp             --CCSSCCEECC----CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHH
T ss_pred             CccccccccccC----CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHH
Confidence            345555655443    5679999999 999999999999999999999999  789999999999999988432233445


Q ss_pred             CceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCE
Q psy7366         419 SYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPL  498 (566)
Q Consensus       419 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~l  498 (566)
                      +.+||++|++....      |+.+. .... ..     ...++++.+++.+..++.+.+||+||             |++
T Consensus        88 ~~~g~~~q~~~~~~------~l~~~-~~~~-~~-----~~~~~l~~~~l~~~~~~~~~~LS~g~-------------~~~  141 (525)
T 1tf7_A           88 RSFGWDLAKLVDEG------KLFIL-DASP-DP-----EGQEVVGGFDLSALIERINYAIQKYR-------------ARR  141 (525)
T ss_dssp             GGGTCCHHHHHHTT------SEEEE-ECCC-CS-----SCCSCCSSHHHHHHHHHHHHHHHHHT-------------CSE
T ss_pred             HHcCCChHHhhccC------cEEEE-ecCc-cc-----chhhhhcccCHHHHHHHHHHHHHHcC-------------CCE
Confidence            67999999753211      11000 0000 00     01123334444445566777777775             789


Q ss_pred             EEEeCCCC-----CCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHH---------HhhCCEEEEEEC
Q psy7366         499 IFLDEPTS-----GMDPGARRFLWTCIERAVSEGRCVILTSHNMEEC---------EALCTKLTIMVN  552 (566)
Q Consensus       499 llLDEPt~-----gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~---------~~~~drv~~l~~  552 (566)
                      ++|||||+     +||+..++.++++++.+++.|+|||++||+++++         ..+||+|++|++
T Consensus       142 lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~  209 (525)
T 1tf7_A          142 VSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN  209 (525)
T ss_dssp             EEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred             EEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence            99999998     4699999999999999987899999999999984         566999999998

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=99.88  E-value=4.2e-26  Score=233.12  Aligned_cols=180  Identities=11%  Similarity=0.085  Sum_probs=135.7

Q ss_pred             CCeEEEeeeEEEeCCcCCCcceeeeeeEE-----------------------EeCCcEEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         340 GDVLVVKRLFKIYANSKGTKPAVNQISFG-----------------------VGRGECFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       340 ~~~l~~~~l~~~y~~~~~~~~~l~~isl~-----------------------i~~Ge~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      ++.|++++|++.|.      ++++++++.                       +++|+++||+||||||||||+++|+|++
T Consensus        41 ~~~i~~~~v~~~y~------p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll  114 (312)
T 3aez_A           41 GEQIDLLEVEEVYL------PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALL  114 (312)
T ss_dssp             TCCCCHHHHHHTHH------HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEeeehhhhhh------hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence            45688999999884      466666654                       8999999999999999999999999999


Q ss_pred             CCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcC
Q psy7366         397 KPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVR  476 (566)
Q Consensus       397 ~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~  476 (566)
                      +|+.|.                .+++|++|++.+++. |+.||+.+.. .++.+.....+.+.+.++.++ ....+.++.
T Consensus       115 ~~~~G~----------------~~v~~v~qd~~~~~~-t~~e~~~~~~-~~g~~~~~d~~~~~~~L~~l~-~~~~~~~~~  175 (312)
T 3aez_A          115 ARWDHH----------------PRVDLVTTDGFLYPN-AELQRRNLMH-RKGFPESYNRRALMRFVTSVK-SGSDYACAP  175 (312)
T ss_dssp             HTSTTC----------------CCEEEEEGGGGBCCH-HHHHHTTCTT-CTTSGGGBCHHHHHHHHHHHH-TTCSCEEEE
T ss_pred             cccCCC----------------CeEEEEecCccCCcc-cHHHHHHHHH-hcCCChHHHHHHHHHHHHHhC-CCcccCCcc
Confidence            997663                259999999888887 9999986532 123344344556778888888 555567889


Q ss_pred             cCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHH-HhhCCEEEEEEC
Q psy7366         477 TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEEC-EALCTKLTIMVN  552 (566)
Q Consensus       477 ~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~-~~~~drv~~l~~  552 (566)
                      +|||||+||+++|++++.+|+|||||||+..+|+..        ..+.+.=-.+|+++|+.+.. ..+++|.+.+.+
T Consensus       176 ~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~--------~~l~~~~D~~I~V~a~~~~~~~R~i~R~~~~rd  244 (312)
T 3aez_A          176 VYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT--------LMVSDLFDFSLYVDARIEDIEQWYVSRFLAMRT  244 (312)
T ss_dssp             EEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS--------CCGGGGCSEEEEEEECHHHHHHHHHHHHHHHTT
T ss_pred             cCChhhhhhhhhHHHhccCCCEEEECCccccCCcch--------HHHHHhcCcEEEEECCHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999998521        01222212457778887664 334455444444

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=99.88  E-value=1e-23  Score=244.96  Aligned_cols=167  Identities=17%  Similarity=0.224  Sum_probs=126.6

Q ss_pred             CeEEEee-----eEEEeCCcCCCcceeeeeeEEEeC-------CcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCc
Q psy7366         341 DVLVVKR-----LFKIYANSKGTKPAVNQISFGVGR-------GECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH  408 (566)
Q Consensus       341 ~~l~~~~-----l~~~y~~~~~~~~~l~~isl~i~~-------Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~  408 (566)
                      .+|++++     |++.|.   ++..+++|++|++.+       |++++|+||||||||||||+| |++.+          
T Consensus       749 ~~l~i~~~rHP~l~~~~~---~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~----------  814 (1022)
T 2o8b_B          749 PFLELKGSRHPCITKTFF---GDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV----------  814 (1022)
T ss_dssp             CCEEEEEECCCC---------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH----------
T ss_pred             ceEEEEeccccEEEEEec---CCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH----------
Confidence            4699999     998883   246799999999987       999999999999999999999 98864          


Q ss_pred             cCCCchHHhcCceE-EEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHH
Q psy7366         409 SIRDSMDLVRSYIG-YCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLS  487 (566)
Q Consensus       409 ~~~~~~~~~~~~i~-~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~  487 (566)
                               ..++| ||||++.   .+++.+++.                     .++|+.+...+..+++|+++++ ++
T Consensus       815 ---------~aqiG~~Vpq~~~---~l~v~d~I~---------------------~rig~~d~~~~~~stf~~em~~-~a  860 (1022)
T 2o8b_B          815 ---------MAQMGCYVPAEVC---RLTPIDRVF---------------------TRLGASDRIMSGESTFFVELSE-TA  860 (1022)
T ss_dssp             ---------HHTTTCCEESSEE---EECCCSBEE---------------------EECC---------CHHHHHHHH-HH
T ss_pred             ---------HhheeEEeccCcC---CCCHHHHHH---------------------HHcCCHHHHhhchhhhHHHHHH-HH
Confidence                     12456 9999853   345555431                     1223333344556788888776 99


Q ss_pred             HHHHHcCCCCEEEEeCCCCCCCHHHH-HHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEE
Q psy7366         488 TAIALLGNPPLIFLDEPTSGMDPGAR-RFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFT  556 (566)
Q Consensus       488 la~al~~~p~lllLDEPt~gLD~~~~-~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~  556 (566)
                      +|++++.+|+++|||||++|+|+... ..++.+|+.+.++ |.++|++||+.+++..+||++.++ +|++.
T Consensus       861 ~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~  930 (1022)
T 2o8b_B          861 SILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMA  930 (1022)
T ss_dssp             HHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEE
T ss_pred             HHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEE
Confidence            99999999999999999999999884 5578999999876 999999999999999999999887 48877

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=99.87  E-value=9.5e-25  Score=226.05  Aligned_cols=194  Identities=17%  Similarity=0.230  Sum_probs=145.6

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC--------
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD--------  412 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~--------  412 (566)
                      .+++++++++.|+.   +..+++++ |+|.+|+++||+||||||||||+++|+|+.+|+.|.|.+.|++...        
T Consensus        44 ~~i~~~~l~~~~~t---g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~  119 (347)
T 2obl_A           44 DPLLRQVIDQPFIL---GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALL  119 (347)
T ss_dssp             CSTTCCCCCSEECC---SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTS
T ss_pred             CCeeecccceecCC---CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhh
Confidence            46788999999962   45799999 9999999999999999999999999999999999999999875211        


Q ss_pred             chHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCC-CccccCcCcCChhHHHHHHHHHH
Q psy7366         413 SMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALG-HYSDREVRTLSGGNKRKLSTAIA  491 (566)
Q Consensus       413 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqrv~la~a  491 (566)
                      .....++.+.+++|..     .+..+.+......         ..+.+.+...+-. -..-..+..||+|| |||++|  
T Consensus       120 ~~~~~~~~v~~~~~~~-----~~~~~r~~~~~~~---------~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la--  182 (347)
T 2obl_A          120 PQSTLSKCVLVVTTSD-----RPALERMKAAFTA---------TTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA--  182 (347)
T ss_dssp             CHHHHTTEEEEEECTT-----SCHHHHHHHHHHH---------HHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH--
T ss_pred             hhhhhhceEEEEECCC-----CCHHHHHHHHHHH---------HHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH--
Confidence            0112445678888753     2333333211100         0011111111100 00115688999999 899999  


Q ss_pred             HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCc-----EEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         492 LLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS--EGR-----CVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       492 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~--~g~-----tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                       +.+|++      |+|||+..+..+.++++++.+  .|.     ||+++|||++  ..+||++++|.+|+|+.+++++++
T Consensus       183 -l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d~v~~i~dG~Ivl~~~l~~~  253 (347)
T 2obl_A          183 -SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGDEVRSILDGHIVLTRELAEE  253 (347)
T ss_dssp             -TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred             -cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--ChhhhheEEeeCcEEEEeCCHHHc
Confidence             678877      999999999999999999874  477     8999999998  678999999999999999987765

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.87  E-value=3.4e-25  Score=221.93  Aligned_cols=148  Identities=14%  Similarity=0.154  Sum_probs=99.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchH
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVL  453 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~  453 (566)
                      .++|+||||||||||+|+|+|+.+|++|+|.++|+++...  ..++.++|++|++.+++.+||.||+.++.......   
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~--~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~---   78 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKT--VEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNEN---   78 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHC------------CCCC--CSCCEEEESCC----CCEEEEECCCC--CCSBCTT---
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcc--eeeeeeEEEeecCCCcCCceEEechhhhhhcccHH---
Confidence            4789999999999999999999999999999999887432  23467999999999999999999987764332211   


Q ss_pred             HHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEE
Q psy7366         454 LNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILT  533 (566)
Q Consensus       454 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~v  533 (566)
                      ..+.+.+.+.    ....+..+.+||||||||+++|||++.   +++||||+.|||+...    ++++.+.+. .+||++
T Consensus        79 ~~~~i~~~~~----~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~----~~l~~L~~~-~~vI~V  146 (270)
T 3sop_A           79 CWEPIEKYIN----EQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDL----EFMKHLSKV-VNIIPV  146 (270)
T ss_dssp             CSHHHHHHHH----HHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHH----HHHHHHHTT-SEEEEE
T ss_pred             HHHHHHHHHH----HHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHHH----HHHHHHHhc-CcEEEE
Confidence            1122333332    334567788999999999999999875   9999999999999873    455666555 888888


Q ss_pred             ccCHH
Q psy7366         534 SHNME  538 (566)
Q Consensus       534 sHd~~  538 (566)
                      .|..+
T Consensus       147 i~K~D  151 (270)
T 3sop_A          147 IAKAD  151 (270)
T ss_dssp             ETTGG
T ss_pred             Eeccc
Confidence            88765

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=99.87  E-value=6.3e-22  Score=205.05  Aligned_cols=83  Identities=35%  Similarity=0.496  Sum_probs=74.1

Q ss_pred             cccCcCcCChhHHH------HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhC
Q psy7366         471 SDREVRTLSGGNKR------KLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALC  544 (566)
Q Consensus       471 ~~~~~~~LSgGqkq------rv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~  544 (566)
                      .++++.+|||||||      |+++|++|+.+|++|||||||+|||+..+..+.+.|+++.++|.|||++|||.+ +..+|
T Consensus       242 ~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~-~~~~~  320 (339)
T 3qkt_A          242 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAA  320 (339)
T ss_dssp             EEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGC
T ss_pred             CcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH-HHHhC
Confidence            46789999999999      678888889999999999999999999999999999998777899999999954 67889


Q ss_pred             CEEEEEE--CCE
Q psy7366         545 TKLTIMV--NGQ  554 (566)
Q Consensus       545 drv~~l~--~G~  554 (566)
                      |++++|.  +|.
T Consensus       321 d~~~~l~~~~g~  332 (339)
T 3qkt_A          321 DHVIRISLENGS  332 (339)
T ss_dssp             SEEEEEEEETTE
T ss_pred             CEEEEEEecCCc
Confidence            9999885  554

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=99.87  E-value=4e-24  Score=220.35  Aligned_cols=132  Identities=20%  Similarity=0.149  Sum_probs=109.6

Q ss_pred             eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHH
Q psy7366         361 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHL  440 (566)
Q Consensus       361 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l  440 (566)
                      +++++||.+++|++++|+||||||||||+++|+|+++|++|.|.++|.+... ....++.++|+++              
T Consensus       160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~-~~~~~~~i~~~~g--------------  224 (330)
T 2pt7_A          160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIV-FKHHKNYTQLFFG--------------  224 (330)
T ss_dssp             HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCC-CSSCSSEEEEECB--------------
T ss_pred             HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccc-cccchhEEEEEeC--------------
Confidence            7899999999999999999999999999999999999999999999865211 1112334554430              


Q ss_pred             HHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHH
Q psy7366         441 EFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCI  520 (566)
Q Consensus       441 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l  520 (566)
                                                             |||+||++||+||..+|++|||||||+       .++++.|
T Consensus       225 ---------------------------------------gg~~~r~~la~aL~~~p~ilildE~~~-------~e~~~~l  258 (330)
T 2pt7_A          225 ---------------------------------------GNITSADCLKSCLRMRPDRIILGELRS-------SEAYDFY  258 (330)
T ss_dssp             ---------------------------------------TTBCHHHHHHHHTTSCCSEEEECCCCS-------THHHHHH
T ss_pred             ---------------------------------------CChhHHHHHHHHhhhCCCEEEEcCCCh-------HHHHHHH
Confidence                                                   899999999999999999999999998       2356777


Q ss_pred             HHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCE
Q psy7366         521 ERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ  554 (566)
Q Consensus       521 ~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~  554 (566)
                      +.+...+.|+|+++|+.+ +...|||+++|.+|.
T Consensus       259 ~~~~~g~~tvi~t~H~~~-~~~~~dri~~l~~g~  291 (330)
T 2pt7_A          259 NVLCSGHKGTLTTLHAGS-SEEAFIRLANMSSSN  291 (330)
T ss_dssp             HHHHTTCCCEEEEEECSS-HHHHHHHHHHHHHTS
T ss_pred             HHHhcCCCEEEEEEcccH-HHHHhhhheehhcCC
Confidence            776543458999999988 777899999998875

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=99.87  E-value=5.7e-22  Score=205.75  Aligned_cols=86  Identities=20%  Similarity=0.286  Sum_probs=78.6

Q ss_pred             ccCcC-cCChhHHHHHHHHHHHc---------CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHH
Q psy7366         472 DREVR-TLSGGNKRKLSTAIALL---------GNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECE  541 (566)
Q Consensus       472 ~~~~~-~LSgGqkqrv~la~al~---------~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~  541 (566)
                      ++++. .||||||||++||++|+         .+|+||||||||++||+..+..+++.|.++.   .|+|++||. +.  
T Consensus       259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~~--  332 (359)
T 2o5v_A          259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-AP--  332 (359)
T ss_dssp             TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-CT--
T ss_pred             CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-cc--
Confidence            45677 89999999999999999         8999999999999999999999999998873   799999995 44  


Q ss_pred             hhCCEEEEEECCEEEEecCcccc
Q psy7366         542 ALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       542 ~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                       .||++++|++|+++..|+++++
T Consensus       333 -~~~~i~~l~~G~i~~~g~~~~~  354 (359)
T 2o5v_A          333 -GAALTLRAQAGRFTPVADEEMQ  354 (359)
T ss_dssp             -TCSEEEEEETTEEEECCCTTTS
T ss_pred             -cCCEEEEEECCEEEecCCHHHH
Confidence             8999999999999999998876

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=99.87  E-value=2.8e-23  Score=211.04  Aligned_cols=184  Identities=13%  Similarity=0.062  Sum_probs=126.1

Q ss_pred             cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCcc-EEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHH
Q psy7366         359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG-NAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPR  437 (566)
Q Consensus       359 ~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G-~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~  437 (566)
                      ..+|+++++.|++|++++|+||||||||||+++|+|...|++| .|.+.+.+..  ...+++++.++++...+    +..
T Consensus        22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~--~~~~~~r~~~~~~~~~~----~~~   95 (296)
T 1cr0_A           22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEES--VEETAEDLIGLHNRVRL----RQS   95 (296)
T ss_dssp             CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSC--HHHHHHHHHHHHTTCCG----GGC
T ss_pred             HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCC--HHHHHHHHHHHHcCCCh----hhc
Confidence            3579999999999999999999999999999999999999888 7766554432  22233344444443321    222


Q ss_pred             HHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhH-HHHHHHHHHHcCCCCEEEEeCCCC---C---CCH
Q psy7366         438 EHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGN-KRKLSTAIALLGNPPLIFLDEPTS---G---MDP  510 (566)
Q Consensus       438 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq-kqrv~la~al~~~p~lllLDEPt~---g---LD~  510 (566)
                      +++.... +   ......+.+.++++...+  .....+..+|.++ +||+. |+++..+|++||+||||+   +   +|.
T Consensus        96 ~~l~~~~-~---~~~~~~~~~~~~l~~~~l--~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~  168 (296)
T 1cr0_A           96 DSLKREI-I---ENGKFDQWFDELFGNDTF--HLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDE  168 (296)
T ss_dssp             HHHHHHH-H---HHTHHHHHHHHHHSSSCE--EEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------
T ss_pred             cccccCC-C---CHHHHHHHHHHHhccCCE--EEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCH
Confidence            3333221 1   111222334444433232  1233456789998 66666 999999999999999999   5   565


Q ss_pred             -HHHHHHHHHHHHHHhC-CcEEEEEccCH--H--------------------HHHhhCCEEEEEECCEE
Q psy7366         511 -GARRFLWTCIERAVSE-GRCVILTSHNM--E--------------------ECEALCTKLTIMVNGQF  555 (566)
Q Consensus       511 -~~~~~l~~~l~~~~~~-g~tvl~vsHd~--~--------------------~~~~~~drv~~l~~G~i  555 (566)
                       .....+.+.|++++++ |+|||++||+.  +                    .+..+||+|++|++|+.
T Consensus       169 ~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~  237 (296)
T 1cr0_A          169 RKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ  237 (296)
T ss_dssp             CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred             HHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence             6778899999998765 99999999994  5                    78889999999998875

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=99.86  E-value=3.1e-21  Score=201.62  Aligned_cols=86  Identities=20%  Similarity=0.336  Sum_probs=80.5

Q ss_pred             cccccccCChhHHHHHHHHHHHh------CCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHHhhc
Q psy7366          84 SDREVRTLSGGNKRKLSTAIALL------GNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALC  157 (566)
Q Consensus        84 ~~~~~~~LSgG~kqrl~iA~al~------~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~~~  157 (566)
                      .++++.+||||||||++||+||+      .+|++|||||||++||+.+++++.++|+++++.|.|||+||||+++ ...|
T Consensus       273 ~~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~-~~~~  351 (365)
T 3qf7_A          273 IERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF-SEAF  351 (365)
T ss_dssp             EEEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH-HTTC
T ss_pred             cCCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH-HHhC
Confidence            36789999999999999999999      7999999999999999999999999999998889999999999988 5679


Q ss_pred             CEEEEEeCCEEEE
Q psy7366         158 TKLTIMVNGQFTC  170 (566)
Q Consensus       158 d~i~vl~~G~i~~  170 (566)
                      |||++|++|+++.
T Consensus       352 d~~~~l~~G~i~~  364 (365)
T 3qf7_A          352 DRKLRITGGVVVN  364 (365)
T ss_dssp             SCEEEEETTEEC-
T ss_pred             CEEEEEECCEEEe
Confidence            9999999999874

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=99.85  E-value=2.3e-21  Score=211.99  Aligned_cols=79  Identities=16%  Similarity=0.222  Sum_probs=73.5

Q ss_pred             cCcCcC-ChhHHHHHHHHHHHcCCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEE
Q psy7366         473 REVRTL-SGGNKRKLSTAIALLGNP--PLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTI  549 (566)
Q Consensus       473 ~~~~~L-SgGqkqrv~la~al~~~p--~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~  549 (566)
                      +++.+| ||||||||+||++|+.+|  ++|||||||+|||+.++..+.++|+++++ |.|||+||||++.+. .||++++
T Consensus       392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~~~~-~~d~~~~  469 (517)
T 4ad8_A          392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQIAA-RAHHHYK  469 (517)
T ss_dssp             CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHHHHH-HSSEEEE
T ss_pred             ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHH-hCCEEEE
Confidence            467788 999999999999999999  99999999999999999999999999987 899999999998775 6999999


Q ss_pred             EECC
Q psy7366         550 MVNG  553 (566)
Q Consensus       550 l~~G  553 (566)
                      |+++
T Consensus       470 ~~~~  473 (517)
T 4ad8_A          470 VEKQ  473 (517)
T ss_dssp             EECC
T ss_pred             Eecc
Confidence            9655

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=99.85  E-value=3.9e-23  Score=204.27  Aligned_cols=168  Identities=13%  Similarity=0.111  Sum_probs=110.7

Q ss_pred             CCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCH
Q psy7366         357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTP  436 (566)
Q Consensus       357 ~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv  436 (566)
                      +++.+|+|+||++++|+++||+||||||||||+++|+|++    |.+.++         ..++.++|++|+. +++.+|+
T Consensus        10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~---------~~~~~i~~v~~d~-~~~~l~~   75 (245)
T 2jeo_A           10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE---------QRQRKVVILSQDR-FYKVLTA   75 (245)
T ss_dssp             -------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC---------GGGCSEEEEEGGG-GBCCCCH
T ss_pred             CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc---------ccCCceEEEeCCc-CccccCH
Confidence            3567999999999999999999999999999999999976    444433         2356799999995 7778999


Q ss_pred             HHHHHHHHHhcCCC--chHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHH
Q psy7366         437 REHLEFYSRVRNVP--SVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARR  514 (566)
Q Consensus       437 ~e~l~~~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~  514 (566)
                      .+++.+........  .......+.+.++.+  .+..+.++..||+||+||+.+ ++++.+|+++|||||....|..   
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~---  149 (245)
T 2jeo_A           76 EQKAKALKGQYNFDHPDAFDNDLMHRTLKNI--VEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE---  149 (245)
T ss_dssp             HHHHHHHTTCCCTTSGGGBCHHHHHHHHHHH--HTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH---
T ss_pred             hHhhhhhccCCCCCCcccccHHHHHHHHHHH--HCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHH---
Confidence            99987654332222  111223344555543  344577899999999999988 5888999999999998888764   


Q ss_pred             HHHHHHHHHHhCCcEEEEEccCHHHH-HhhCCEEEEEECCE
Q psy7366         515 FLWTCIERAVSEGRCVILTSHNMEEC-EALCTKLTIMVNGQ  554 (566)
Q Consensus       515 ~l~~~l~~~~~~g~tvl~vsHd~~~~-~~~~drv~~l~~G~  554 (566)
                           +.++  .+.+|+++||+...+ ..+++++   .+|+
T Consensus       150 -----l~~~--~~~~i~v~th~~~~~~r~~~r~~---~~G~  180 (245)
T 2jeo_A          150 -----IRDM--FHLRLFVDTDSDVRLSRRVLRDV---RRGR  180 (245)
T ss_dssp             -----HHTT--CSEEEEEECCHHHHHHHHHHHHT---C---
T ss_pred             -----HHHh--cCeEEEEECCHHHHHHHHHHHHH---HcCC
Confidence                 1222  278999999974444 4455444   5554

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=99.83  E-value=1.4e-21  Score=224.32  Aligned_cols=168  Identities=20%  Similarity=0.234  Sum_probs=117.8

Q ss_pred             eEEEeeeEEEeCC-cCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHH--------HCCCCCCccEEEEcCccCCC
Q psy7366         342 VLVVKRLFKIYAN-SKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKML--------TGAIKPTSGNAYVMNHSIRD  412 (566)
Q Consensus       342 ~l~~~~l~~~y~~-~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i--------~G~~~~~~G~i~~~g~~~~~  412 (566)
                      .+.+++...-+-. ..+...+++|++|++.+|++++|+||||||||||||++        .|...|..+..         
T Consensus       631 ~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~---------  701 (934)
T 3thx_A          631 RIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE---------  701 (934)
T ss_dssp             EEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE---------
T ss_pred             ceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc---------
Confidence            4666665433311 11245789999999999999999999999999999999        55544433211         


Q ss_pred             chHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHH
Q psy7366         413 SMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIAL  492 (566)
Q Consensus       413 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al  492 (566)
                              ++++.                                  .++.++|+.+   .....+|+|++++..+|+++
T Consensus       702 --------~~~~d----------------------------------~i~~~ig~~d---~l~~~lStf~~e~~~~a~il  736 (934)
T 3thx_A          702 --------VSIVD----------------------------------CILARVGAGD---SQLKGVSTFMAEMLETASIL  736 (934)
T ss_dssp             --------EECCS----------------------------------EEEEECC------------CHHHHHHHHHHHHH
T ss_pred             --------chHHH----------------------------------HHHHhcCchh---hHHHhHhhhHHHHHHHHHHH
Confidence                    11100                                  0111122221   12344677777777777777


Q ss_pred             --cCCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         493 --LGNPPLIFLDEPTSGMDPGARRFL-WTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       493 --~~~p~lllLDEPt~gLD~~~~~~l-~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                        +.+|+++||||||+|+|+.....+ +.+++.+.++ |.++|++||+.+. ..+||++..|.+|++...++.+++
T Consensus       737 ~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el-~~lad~~~~v~ng~v~~~~~~~~l  811 (934)
T 3thx_A          737 RSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHEL-TALANQIPTVNNLHVTALTTEETL  811 (934)
T ss_dssp             HHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGG-GGGGGTCTTEEEEEEEEEEETTEE
T ss_pred             HhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHH-HHHhcccceeEeeEEEEEecCCcE
Confidence              999999999999999999998888 7777888764 9999999999655 578999999999999988877654

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=99.83  E-value=2.2e-23  Score=223.36  Aligned_cols=163  Identities=13%  Similarity=0.082  Sum_probs=127.6

Q ss_pred             CCcchHHHHHhccccCCCc---cCCCCCcccccccceeEEcCCCCC---CCCCCHHHHHHHHHHh-cCCChhhHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQK---VPGSNPTIDKNLSYIGYCPQFDAL---NDRLTPREHLEFYSRV-RNVPSVLLNTIVNE   73 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~---~~~~~~~~~~~~~~ig~v~Q~~~l---~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~   73 (566)
                      .||||++|+++|++.+...   +...    ....+.++|+||++.+   ...+||.||+ |+... .+.   ...+++.+
T Consensus       149 sGKSTLlr~L~Gl~~p~~G~~pI~vd----g~~~~~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~---~~~~~~~~  220 (460)
T 2npi_A          149 TGKTSLSRTLCSYALKFNAYQPLYIN----LDPQQPIFTVPGCISATPISDILDAQLPT-WGQSLTSGA---TLLHNKQP  220 (460)
T ss_dssp             SSHHHHHHHHHHTTHHHHCCCCEEEE----CCTTSCSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSC---CSSCCBCC
T ss_pred             CCHHHHHHHHhCcccccCCceeEEEc----CCccCCeeeeccchhhcccccccchhhhh-cccccccCc---chHHHHHH
Confidence            5999999999999864321   2111    1224579999999854   4467999998 65432 121   11234556


Q ss_pred             HHHHcCCCcccccccccCChhHHHHHHHHHH--HhCCCCE----EEeeC-CCCCCCHHHHHHHHHHHHHHHhCCCEEEEe
Q psy7366          74 SLNKFALGHYSDREVRTLSGGNKRKLSTAIA--LLGNPPL----IFLDE-PTSGMDPGARRFLWTCIERAVSEGRCVILT  146 (566)
Q Consensus        74 ~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~a--l~~~p~v----LlLDE-Pt~~LD~~~~~~l~~~l~~l~~~g~tviii  146 (566)
                      +++.+|+....+  +.+|||||||||+||+|  |+.+|++    ||||| ||++||+. ++.|.+++++   .|.|+|+|
T Consensus       221 ll~~~gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~---~~~tviiV  294 (460)
T 2npi_A          221 MVKNFGLERINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEK---LNVNIMLV  294 (460)
T ss_dssp             EECCCCSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHH---TTCCEEEE
T ss_pred             HHHHhCCCcccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHH---hCCCEEEE
Confidence            788889987665  88999999999999999  9999999    99999 99999999 7777776654   37899999


Q ss_pred             cCChh------HHHhhcCE-----EEEEe-CCEEEEecChhHHH
Q psy7366         147 SHNME------ECEALCTK-----LTIMV-NGQFTCLGSATHLK  178 (566)
Q Consensus       147 sH~~~------~~~~~~d~-----i~vl~-~G~i~~~g~~~~~~  178 (566)
                      +|+.+      ++..+|||     |++|+ +|+++ .|+++++.
T Consensus       295 th~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~  337 (460)
T 2npi_A          295 LCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKR  337 (460)
T ss_dssp             ECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHH
T ss_pred             EccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHh
Confidence            99987      88899999     99999 99999 89888764

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*

Probab=99.83  E-value=1.4e-20  Score=170.99  Aligned_cols=84  Identities=36%  Similarity=0.463  Sum_probs=76.8

Q ss_pred             cccccccCChhHHHHHHHH------HHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHHhhc
Q psy7366          84 SDREVRTLSGGNKRKLSTA------IALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALC  157 (566)
Q Consensus        84 ~~~~~~~LSgG~kqrl~iA------~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~~~  157 (566)
                      .++++.+||||||||++||      +||+.+|++|||||||++||+.+++++.+.|+++++.|.|||++||++ ++.++|
T Consensus        51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~-~~~~~~  129 (148)
T 1f2t_B           51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE-ELKDAA  129 (148)
T ss_dssp             EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG-GGGGGC
T ss_pred             ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH-HHHHhC
Confidence            4788999999999999876      899999999999999999999999999999999877799999999999 577899


Q ss_pred             CEEEEE--eCCEE
Q psy7366         158 TKLTIM--VNGQF  168 (566)
Q Consensus       158 d~i~vl--~~G~i  168 (566)
                      |+|++|  ++|..
T Consensus       130 d~ii~l~~~~g~s  142 (148)
T 1f2t_B          130 DHVIRISLENGSS  142 (148)
T ss_dssp             SEEEEEEEETTEE
T ss_pred             CEEEEEEcCCCeE
Confidence            999999  56653

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=99.83  E-value=1.1e-20  Score=200.97  Aligned_cols=83  Identities=18%  Similarity=0.248  Sum_probs=75.8

Q ss_pred             cccc-CChhHHHHHHHHHHHhCCC--CEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHHhhcCEEEEE
Q psy7366          87 EVRT-LSGGNKRKLSTAIALLGNP--PLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIM  163 (566)
Q Consensus        87 ~~~~-LSgG~kqrl~iA~al~~~p--~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~~~d~i~vl  163 (566)
                      ++.. ||||||||++||++|+.+|  ++|||||||+|||+.++++|.++|++++ +|.|||+|||+++++ +.|||+++|
T Consensus       291 ~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~~~-~~~d~i~~l  368 (415)
T 4aby_A          291 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQIA-ARAHHHYKV  368 (415)
T ss_dssp             BGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHHHH-TTCSEEEEE
T ss_pred             chhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHHHH-hhcCeEEEE
Confidence            3444 5999999999999999999  9999999999999999999999999986 699999999999776 679999999


Q ss_pred             ----eCCEEEEe
Q psy7366         164 ----VNGQFTCL  171 (566)
Q Consensus       164 ----~~G~i~~~  171 (566)
                          ++|+++..
T Consensus       369 ~k~~~~G~~~~~  380 (415)
T 4aby_A          369 EKQVEDGRTVSH  380 (415)
T ss_dssp             EEEEETTEEEEE
T ss_pred             EEeccCCceEEE
Confidence                99998754

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*

Probab=99.82  E-value=4.4e-20  Score=167.64  Aligned_cols=84  Identities=36%  Similarity=0.463  Sum_probs=76.5

Q ss_pred             cccCcCcCChhHHHHHHHH------HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhC
Q psy7366         471 SDREVRTLSGGNKRKLSTA------IALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALC  544 (566)
Q Consensus       471 ~~~~~~~LSgGqkqrv~la------~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~  544 (566)
                      .++++.+||||||||++||      |||+.+|++|||||||+|||+.++..+.+.|.++.++|.|||++|||. ++..+|
T Consensus        51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~-~~~~~~  129 (148)
T 1f2t_B           51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE-ELKDAA  129 (148)
T ss_dssp             EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG-GGGGGC
T ss_pred             ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH-HHHHhC
Confidence            5788999999999999876      899999999999999999999999999999999877789999999998 567899


Q ss_pred             CEEEEE--ECCEE
Q psy7366         545 TKLTIM--VNGQF  555 (566)
Q Consensus       545 drv~~l--~~G~i  555 (566)
                      |++++|  .+|..
T Consensus       130 d~ii~l~~~~g~s  142 (148)
T 1f2t_B          130 DHVIRISLENGSS  142 (148)
T ss_dssp             SEEEEEEEETTEE
T ss_pred             CEEEEEEcCCCeE
Confidence            999999  56643

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=99.80  E-value=5.5e-21  Score=185.93  Aligned_cols=148  Identities=15%  Similarity=0.104  Sum_probs=96.7

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHHCCCCC-------CccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHH
Q psy7366         368 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-------TSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHL  440 (566)
Q Consensus       368 ~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~-------~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l  440 (566)
                      -|++|++++|+||||||||||+++|+|...+       ..|.++++++....     ..++++++|...+++. ++.+|+
T Consensus        21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~-----~~~i~~~~~~~~~~~~-~~~~~~   94 (231)
T 4a74_A           21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR-----PERIREIAQNRGLDPD-EVLKHI   94 (231)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC-----HHHHHHHHHHTTSCHH-HHHHTE
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC-----HHHHHHHHHHcCCCHH-HHhhcE
Confidence            5899999999999999999999999996554       33467777754311     1134555665554443 555554


Q ss_pred             HHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHH-HHHHHHHHH-------cCCCCEEEEeCCCCCCCHH-
Q psy7366         441 EFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNK-RKLSTAIAL-------LGNPPLIFLDEPTSGMDPG-  511 (566)
Q Consensus       441 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqk-qrv~la~al-------~~~p~lllLDEPt~gLD~~-  511 (566)
                      .+..                                .++.+++ +.+..++++       ..+|+++++||||+++|+. 
T Consensus        95 ~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~  142 (231)
T 4a74_A           95 YVAR--------------------------------AFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEY  142 (231)
T ss_dssp             EEEE--------------------------------CCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHS
T ss_pred             EEEe--------------------------------cCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhcccc
Confidence            3211                                1122221 223333333       3599999999999999984 


Q ss_pred             ------H-----HHHHHHHHHHHHhC-CcEEEEEccCHHH----HHhhCCEEEEEECC
Q psy7366         512 ------A-----RRFLWTCIERAVSE-GRCVILTSHNMEE----CEALCTKLTIMVNG  553 (566)
Q Consensus       512 ------~-----~~~l~~~l~~~~~~-g~tvl~vsHd~~~----~~~~~drv~~l~~G  553 (566)
                            .     ...+++.|.+++++ |.|||++||+.++    +..+||++++|++|
T Consensus       143 ~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~  200 (231)
T 4a74_A          143 IGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG  200 (231)
T ss_dssp             CSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred             CCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence                  2     23677777777654 9999999995554    88999999999875

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=99.80  E-value=4.2e-21  Score=191.29  Aligned_cols=132  Identities=18%  Similarity=0.194  Sum_probs=100.1

Q ss_pred             ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCC-ccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHH
Q psy7366         360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT-SGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPRE  438 (566)
Q Consensus       360 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~-~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e  438 (566)
                      ++|+++|  +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++.           |++|+...+       
T Consensus        15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~-----------~~~~~~~~~-------   74 (261)
T 2eyu_A           15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-----------YVFKHKKSI-------   74 (261)
T ss_dssp             THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCC-----------SCCCCSSSE-------
T ss_pred             HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcce-----------eecCCccee-------
Confidence            4899999  8999999999999999999999999999998 999999997742           333322100       


Q ss_pred             HHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHH
Q psy7366         439 HLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT  518 (566)
Q Consensus       439 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~  518 (566)
                                ...           ..+++..      ..|      |++||++|..+|++||+||||   |+.+...+  
T Consensus        75 ----------v~q-----------~~~gl~~------~~l------~~~la~aL~~~p~illlDEp~---D~~~~~~~--  116 (261)
T 2eyu_A           75 ----------VNQ-----------REVGEDT------KSF------ADALRAALREDPDVIFVGEMR---DLETVETA--  116 (261)
T ss_dssp             ----------EEE-----------EEBTTTB------SCH------HHHHHHHHHHCCSEEEESCCC---SHHHHHHH--
T ss_pred             ----------eeH-----------HHhCCCH------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHHHH--
Confidence                      000           0223221      122      799999999999999999999   98886544  


Q ss_pred             HHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEEC
Q psy7366         519 CIERAVSEGRCVILTSHNMEECEALCTKLTIMVN  552 (566)
Q Consensus       519 ~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~  552 (566)
                       ++. +..|.+|+++||+.+ +...|||+++|..
T Consensus       117 -l~~-~~~g~~vl~t~H~~~-~~~~~dri~~l~~  147 (261)
T 2eyu_A          117 -LRA-AETGHLVFGTLHTNT-AIDTIHRIVDIFP  147 (261)
T ss_dssp             -HHH-HHTTCEEEEEECCSS-HHHHHHHHHHTSC
T ss_pred             -HHH-HccCCEEEEEeCcch-HHHHHHHHhhhcC
Confidence             333 356999999999977 5677888776643

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=99.79  E-value=2.3e-20  Score=213.78  Aligned_cols=145  Identities=14%  Similarity=0.112  Sum_probs=100.7

Q ss_pred             CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHH
Q psy7366         358 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPR  437 (566)
Q Consensus       358 ~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~  437 (566)
                      +..+++|+||++++|++++|+||||||||||||+|+++.....                   .-.++|+.....+   + 
T Consensus       659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq-------------------~g~~vpa~~~~i~---~-  715 (918)
T 3thx_B          659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQ-------------------IGSYVPAEEATIG---I-  715 (918)
T ss_dssp             SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHH-------------------HTCCBSSSEEEEE---C-
T ss_pred             CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhh-------------------cCccccchhhhhh---H-
Confidence            4679999999999999999999999999999999975421100                   0012222110000   0 


Q ss_pred             HHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHH
Q psy7366         438 EHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW  517 (566)
Q Consensus       438 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~  517 (566)
                                          ++.++.++++.+...+..+++|+||+|++.|+++ +.+|+++||||||+|||+.....+.
T Consensus       716 --------------------~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~  774 (918)
T 3thx_B          716 --------------------VDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIA  774 (918)
T ss_dssp             --------------------CSEEEEEC----------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHH
T ss_pred             --------------------HHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHH
Confidence                                0011222333444456678999999999999999 8999999999999999999998887


Q ss_pred             -HHHHHHHh-CCcEEEEEccCHHHHHhhCCEE
Q psy7366         518 -TCIERAVS-EGRCVILTSHNMEECEALCTKL  547 (566)
Q Consensus       518 -~~l~~~~~-~g~tvl~vsHd~~~~~~~~drv  547 (566)
                       .+++.+.+ .|.++|++|||++.+ .+||+.
T Consensus       775 ~~il~~L~~~~g~tvl~vTH~~el~-~l~~~~  805 (918)
T 3thx_B          775 YATLEYFIRDVKSLTLFVTHYPPVC-ELEKNY  805 (918)
T ss_dssp             HHHHHHHHHTTCCEEEEECSCGGGG-GHHHHT
T ss_pred             HHHHHHHHHhcCCeEEEEeCcHHHH-HHHhhc
Confidence             77777765 599999999998665 466654

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.79  E-value=6.4e-22  Score=201.48  Aligned_cols=164  Identities=14%  Similarity=0.119  Sum_probs=88.5

Q ss_pred             eeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCC-CCCCccEEEEcCccCCCchHHhcCceEEE
Q psy7366         346 KRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA-IKPTSGNAYVMNHSIRDSMDLVRSYIGYC  424 (566)
Q Consensus       346 ~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~-~~~~~G~i~~~g~~~~~~~~~~~~~i~~v  424 (566)
                      .||++.|+    ++.++++++|+|      +|+||||+|||||+++|+|. ..|++| |.++|.++.....  ...++|+
T Consensus         2 ~~l~~~~~----~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~--~~~~~~~   68 (301)
T 2qnr_A            2 SNLPNQVH----RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQ--IEASTVE   68 (301)
T ss_dssp             --------------------CEEE------EEEEETTSSHHHHHHHHHC---------------------------CEEE
T ss_pred             CCCcceEC----CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcce--EeeEEEE
Confidence            47888886    577999999998      99999999999999999998 889999 8888877643211  3468999


Q ss_pred             ecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCC
Q psy7366         425 PQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEP  504 (566)
Q Consensus       425 ~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEP  504 (566)
                      +|+..++..+|+.|+..++.....  ..........+      .+..++++.++|||||||+.+||+++    ++++|||
T Consensus        69 ~q~~~~~~~ltv~Dt~g~~~~~~~--~e~~~~l~~~l------~~~~~~~~~~~sgg~rqrv~~ara~~----ll~ldeP  136 (301)
T 2qnr_A           69 IEERGVKLRLTVVDTPGYGDAINC--RDCFKTIISYI------DEQFERYLHDESGLNRRHIIDNRVHC----CFYFISP  136 (301)
T ss_dssp             EC---CCEEEEEEEEC-------------CTTHHHHH------HHHHHHHHHHHTSSCCTTCCCCCCCE----EEEEECS
T ss_pred             ecCCCcccCcchhhhhhhhhhcCc--HHHHHHHHHHH------HHHHHHHHHHhCHHhhhhhhhhhhhh----eeeeecC
Confidence            998877777888887665322110  00000111111      12345788999999999999988886    9999999


Q ss_pred             CCC-CCHHHHHHHHHHHHHHHhC-CcEEEEEccCHH
Q psy7366         505 TSG-MDPGARRFLWTCIERAVSE-GRCVILTSHNME  538 (566)
Q Consensus       505 t~g-LD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~  538 (566)
                      |++ ||+...    ++++++.+. +.++|+++||+.
T Consensus       137 t~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~  168 (301)
T 2qnr_A          137 FGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL  168 (301)
T ss_dssp             SSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred             cccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence            985 999874    555666544 789999999973

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=99.79  E-value=1.8e-20  Score=211.74  Aligned_cols=160  Identities=18%  Similarity=0.122  Sum_probs=114.8

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCC-CCccEEEEcCccCCCchHHhcCc
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-PTSGNAYVMNHSIRDSMDLVRSY  420 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~  420 (566)
                      .+.+++...-.-.. ++..+++|+||+   |++++|+||||||||||||+|+|+.. +..|.+.    +      ..+..
T Consensus       550 ~i~i~~~rHP~le~-~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v----p------a~~~~  615 (765)
T 1ewq_A          550 RLQIRAGRHPVVER-RTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV----P------AEEAH  615 (765)
T ss_dssp             SEEEEEECCTTGGG-TSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB----S------SSEEE
T ss_pred             cEEEEEeECceEcc-CCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee----e------hhccc
Confidence            46777663322100 246789999999   99999999999999999999999874 6777642    1      11335


Q ss_pred             eEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHH--cCCCCE
Q psy7366         421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIAL--LGNPPL  498 (566)
Q Consensus       421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al--~~~p~l  498 (566)
                      +++++|   +++.+++.||+..                                  .+|+|+++++.+++++  +.+|++
T Consensus       616 i~~v~~---i~~~~~~~d~l~~----------------------------------g~S~~~~e~~~la~il~~a~~p~L  658 (765)
T 1ewq_A          616 LPLFDG---IYTRIGASDDLAG----------------------------------GKSTFMVEMEEVALILKEATENSL  658 (765)
T ss_dssp             ECCCSE---EEEECCC----------------------------------------CCSHHHHHHHHHHHHHHHCCTTEE
T ss_pred             eeeHHH---hhccCCHHHHHHh----------------------------------cccHHHHHHHHHHHHHHhccCCCE
Confidence            777776   4555677666531                                  2588999999999999  999999


Q ss_pred             EEEeCC---CCCCCHHHH-HHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEe
Q psy7366         499 IFLDEP---TSGMDPGAR-RFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCL  558 (566)
Q Consensus       499 llLDEP---t~gLD~~~~-~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~  558 (566)
                      +|||||   |++||+.+. ..+.+.|.+   .|.++|++||+.+.+. +|  .-.+.++.+...
T Consensus       659 lLLDEpgrGTs~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~l~~-~~--~~~v~n~~~~~~  716 (765)
T 1ewq_A          659 VLLDEVGRGTSSLDGVAIATAVAEALHE---RRAYTLFATHYFELTA-LG--LPRLKNLHVAAR  716 (765)
T ss_dssp             EEEESTTTTSCHHHHHHHHHHHHHHHHH---HTCEEEEECCCHHHHT-CC--CTTEEEEEEEEE
T ss_pred             EEEECCCCCCCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHH-hh--hhcceEEEEEEE
Confidence            999999   999999886 467777765   4899999999987764 55  222344444443

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=99.79  E-value=4e-22  Score=191.99  Aligned_cols=146  Identities=15%  Similarity=0.153  Sum_probs=118.8

Q ss_pred             EeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCC--CCCCHHHHHHHHHHh
Q psy7366         369 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALN--DRLTPREHLEFYSRV  446 (566)
Q Consensus       369 i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~--~~~tv~e~l~~~~~~  446 (566)
                      .++|+++||+||||||||||+++|+|++.|                     .++|++|++.++  ..+|+.+++.+..  
T Consensus         3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~--   59 (211)
T 3asz_A            3 APKPFVIGIAGGTASGKTTLAQALARTLGE---------------------RVALLPMDHYYKDLGHLPLEERLRVNY--   59 (211)
T ss_dssp             --CCEEEEEEESTTSSHHHHHHHHHHHHGG---------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT--
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---------------------CeEEEecCccccCcccccHHHhcCCCC--
Confidence            578999999999999999999999998764                     389999998765  5678988865432  


Q ss_pred             cCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHH----HHHHHHHHHcCCCCEEEEeCCCCC-------CCHHHHHH
Q psy7366         447 RNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNK----RKLSTAIALLGNPPLIFLDEPTSG-------MDPGARRF  515 (566)
Q Consensus       447 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqk----qrv~la~al~~~p~lllLDEPt~g-------LD~~~~~~  515 (566)
                       +.+.....+.+.+.++.+++.+..+.++..+|+|++    ||+.+|++++.+|+++++||||++       ||+.....
T Consensus        60 -~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~  138 (211)
T 3asz_A           60 -DHPDAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADER  138 (211)
T ss_dssp             -TSGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHH
T ss_pred             -CChhhhhHHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHH
Confidence             122222345577788888888777888999999974    688999999999999999999999       99999999


Q ss_pred             HHHHHHHH-HhCCcEEEEEccCHH
Q psy7366         516 LWTCIERA-VSEGRCVILTSHNME  538 (566)
Q Consensus       516 l~~~l~~~-~~~g~tvl~vsHd~~  538 (566)
                      +.+.+.+. .+.|.|++.++|++.
T Consensus       139 ~~r~l~r~~~~~g~t~~~~~~~~~  162 (211)
T 3asz_A          139 FIRRLKRDVLERGRSLEGVVAQYL  162 (211)
T ss_dssp             HHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHH
Confidence            99988875 456999999999853

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=99.78  E-value=7.6e-19  Score=187.77  Aligned_cols=78  Identities=21%  Similarity=0.211  Sum_probs=70.0

Q ss_pred             cCcCcCChhHHHHHHHHHHHc----CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEE
Q psy7366         473 REVRTLSGGNKRKLSTAIALL----GNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLT  548 (566)
Q Consensus       473 ~~~~~LSgGqkqrv~la~al~----~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~  548 (566)
                      +++..||||||||++||++|+    .+|+++||||||++||+..+..+.+.|+++.+++.++|++||+... ...||+++
T Consensus       329 ~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~-~~~~d~~~  407 (430)
T 1w1w_A          329 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTM-FEKSDALV  407 (430)
T ss_dssp             CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHH-HTTCSEEE
T ss_pred             cccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHH-HHhCCEEE
Confidence            445679999999999999999    6899999999999999999999999999886668899999999665 56799999


Q ss_pred             EEE
Q psy7366         549 IMV  551 (566)
Q Consensus       549 ~l~  551 (566)
                      +|.
T Consensus       408 ~~~  410 (430)
T 1w1w_A          408 GVY  410 (430)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            885

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=99.77  E-value=7.4e-21  Score=193.42  Aligned_cols=150  Identities=15%  Similarity=0.070  Sum_probs=108.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCch-----HH--hcCceEEEecCCCCCCCCCHHHHHHHH
Q psy7366         371 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM-----DL--VRSYIGYCPQFDALNDRLTPREHLEFY  443 (566)
Q Consensus       371 ~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~-----~~--~~~~i~~v~q~~~l~~~~tv~e~l~~~  443 (566)
                      +|++++|+||||||||||+++|+|+++|++|+|.+.|.++....     ..  .+..++|++|++.+++..++++|+.+.
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~  180 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM  180 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence            79999999999999999999999999999999999999875421     11  245799999999888888999998764


Q ss_pred             HHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy7366         444 SRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERA  523 (566)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~  523 (566)
                      ... +..        ..+++..|..+.....+.+||   +||++||||++.+|+.++|     .||+.+...+.+.++++
T Consensus       181 ~~~-~~d--------~~llDt~G~~~~~~~~~~eLs---~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~  243 (304)
T 1rj9_A          181 KAR-GYD--------LLFVDTAGRLHTKHNLMEELK---KVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKF  243 (304)
T ss_dssp             HHH-TCS--------EEEECCCCCCTTCHHHHHHHH---HHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHH
T ss_pred             HhC-CCC--------EEEecCCCCCCchHHHHHHHH---HHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHH
Confidence            321 110        012233344333333444454   8999999999999994444     44444444566666666


Q ss_pred             HhC-CcEEEEEccCH
Q psy7366         524 VSE-GRCVILTSHNM  537 (566)
Q Consensus       524 ~~~-g~tvl~vsHd~  537 (566)
                      .+. |.|+|++||+.
T Consensus       244 ~~~~~~t~iivTh~d  258 (304)
T 1rj9_A          244 HEAVGLTGVIVTKLD  258 (304)
T ss_dssp             HHHHCCSEEEEECTT
T ss_pred             HHHcCCcEEEEECCc
Confidence            654 89999999984

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=99.77  E-value=3.1e-21  Score=214.31  Aligned_cols=190  Identities=14%  Similarity=0.226  Sum_probs=119.2

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeee----------eEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCC-CccEEEEcCccC
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQI----------SFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-TSGNAYVMNHSI  410 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~i----------sl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~-~~G~i~~~g~~~  410 (566)
                      .+.++|+++.|+..  .+++|+.+          +|+++.   +||+|||||||||||++|+|+..| ++|.|+++|.++
T Consensus        10 ~i~~~~l~~~~~~~--~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i   84 (608)
T 3szr_A           10 SVAENNLCSQYEEK--VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVL   84 (608)
T ss_dssp             ----------CHHH--HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEE
T ss_pred             hhhhhhhhHHHHHH--HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEE
Confidence            46788888888521  12344433          366665   999999999999999999999988 799999999885


Q ss_pred             CC----chHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHH
Q psy7366         411 RD----SMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKL  486 (566)
Q Consensus       411 ~~----~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv  486 (566)
                      ..    ....++..++|+||++.+++.+||.+|+.+.....+...             -++.   .           +++
T Consensus        85 ~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~-------------~~~s---~-----------~~i  137 (608)
T 3szr_A           85 KLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEG-------------MGIS---H-----------ELI  137 (608)
T ss_dssp             EEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCSS-------------SCCC---S-----------CCE
T ss_pred             EEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCCc-------------cccc---h-----------HHH
Confidence            21    123456789999999999999999999876532211000             0111   0           112


Q ss_pred             HHHHHHcCCCCEEEEeCC------CCCCCHHHHHHHHHHHHHHHhC--CcEEEEEccCHHH--------HHhh----CCE
Q psy7366         487 STAIALLGNPPLIFLDEP------TSGMDPGARRFLWTCIERAVSE--GRCVILTSHNMEE--------CEAL----CTK  546 (566)
Q Consensus       487 ~la~al~~~p~lllLDEP------t~gLD~~~~~~l~~~l~~~~~~--g~tvl~vsHd~~~--------~~~~----~dr  546 (566)
                      .++.+....|+++|+|||      |+|||+..+..+.++++++.++  +.+++++|||++.        +..+    +..
T Consensus       138 ~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rt  217 (608)
T 3szr_A          138 TLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRT  217 (608)
T ss_dssp             EEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSE
T ss_pred             HHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCce
Confidence            222233458999999999      9999999999999999997543  7889999999762        2332    356


Q ss_pred             EEEEECCEEEEecCccc
Q psy7366         547 LTIMVNGQFTCLGSATH  563 (566)
Q Consensus       547 v~~l~~G~i~~~g~~~~  563 (566)
                      |+|+.++.++..|+.++
T Consensus       218 I~VlTK~Dlv~~g~~~~  234 (608)
T 3szr_A          218 IGILTKPDLVDKGTEDK  234 (608)
T ss_dssp             EEEEECGGGSSSSSTTC
T ss_pred             EEEecchhhcCcccHHH
Confidence            78899988877776543

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=99.76  E-value=1.2e-19  Score=206.24  Aligned_cols=156  Identities=17%  Similarity=0.184  Sum_probs=109.1

Q ss_pred             CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCC-CccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCH
Q psy7366         358 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-TSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTP  436 (566)
Q Consensus       358 ~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~-~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv  436 (566)
                      ++.+++|++|+ ++|++++|+||||||||||||+|+|+..+ ..|.      .+..    .+..+++++|   ++..+++
T Consensus       594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~------~vpa----~~~~i~~~~~---i~~~~~~  659 (800)
T 1wb9_A          594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS------YVPA----QKVEIGPIDR---IFTRVGA  659 (800)
T ss_dssp             SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC------CBSS----SEEEECCCCE---EEEEEC-
T ss_pred             Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc------ccch----hcccceeHHH---HHhhCCH
Confidence            45789999999 99999999999999999999999997432 2221      1110    1123555554   3444555


Q ss_pred             HHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHH
Q psy7366         437 REHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFL  516 (566)
Q Consensus       437 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l  516 (566)
                      .+|+..                               ..+++|+++++ ++.+...+.+|+++|||||++|+|+.....+
T Consensus       660 ~d~l~~-------------------------------~~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i  707 (800)
T 1wb9_A          660 ADDLAS-------------------------------GRSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSL  707 (800)
T ss_dssp             -----------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHH
T ss_pred             HHHHHh-------------------------------hhhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHH
Confidence            555421                               12346677664 4445557999999999999999999877775


Q ss_pred             -HHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecC
Q psy7366         517 -WTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS  560 (566)
Q Consensus       517 -~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~  560 (566)
                       +.+++.+.++ |.++|++|||.+.+ .+||++..+.+|++.....
T Consensus       708 ~~~ll~~l~~~~g~~vl~~TH~~el~-~l~d~~~~v~n~~~~~~~~  752 (800)
T 1wb9_A          708 AWACAENLANKIKALTLFATHYFELT-QLPEKMEGVANVHLDALEH  752 (800)
T ss_dssp             HHHHHHHHHHTTCCEEEEECSCGGGG-GHHHHSTTEEEEEEEEEEE
T ss_pred             HHHHHHHHHhccCCeEEEEeCCHHHH-HHhhhhhceEEEEEEEEEc
Confidence             7888888874 99999999998765 5899887778887765543

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=99.76  E-value=2.9e-21  Score=183.08  Aligned_cols=158  Identities=15%  Similarity=0.038  Sum_probs=105.0

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCc
Q psy7366         372 GECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPS  451 (566)
Q Consensus       372 Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~  451 (566)
                      |++++|+||||||||||+++|+|+++ ++| |.++|...... ...++++||++|+..  ...   +++.   .+. ...
T Consensus         1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~-~~~~~~ig~~~~~~~--g~~---~~l~---~~~-~~~   68 (189)
T 2i3b_A            1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEV-RQGGRRIGFDVVTLS--GTR---GPLS---RVG-LEP   68 (189)
T ss_dssp             CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEE-ETTSSEEEEEEEETT--SCE---EEEE---ECC-CCC
T ss_pred             CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchh-HhhhceEEEEEEecc--cce---ehhh---ccc-ccC
Confidence            78999999999999999999999999 999 99999876432 235778999999751  111   1110   000 000


Q ss_pred             hHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHH-HHHH---HHcCCCCEEEEeC--CCCCCCHHHHHHHHHHHHHHHh
Q psy7366         452 VLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKL-STAI---ALLGNPPLIFLDE--PTSGMDPGARRFLWTCIERAVS  525 (566)
Q Consensus       452 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv-~la~---al~~~p~lllLDE--Pt~gLD~~~~~~l~~~l~~~~~  525 (566)
                      .           ...-.+...++...+|+|||+++ ++++   |++.+|++|||||  |+..+|+...+.+.+++.    
T Consensus        69 ~-----------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~----  133 (189)
T 2i3b_A           69 P-----------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS----  133 (189)
T ss_dssp             C-----------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH----
T ss_pred             C-----------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh----
Confidence            0           00001134556678999999888 4444   5799999999999  899999987666655554    


Q ss_pred             CCcEEE----EEccCHHHHHhhCCEEEEEECCEEEEe
Q psy7366         526 EGRCVI----LTSHNMEECEALCTKLTIMVNGQFTCL  558 (566)
Q Consensus       526 ~g~tvl----~vsHd~~~~~~~~drv~~l~~G~i~~~  558 (566)
                      ...++|    .+||+.+  ..++|++..+.+|+|...
T Consensus       134 ~~~~~ilgti~vsh~~~--~~~vd~i~~~~~~~i~~~  168 (189)
T 2i3b_A          134 TPGTIILGTIPVPKGKP--LALVEEIRNRKDVKVFNV  168 (189)
T ss_dssp             CSSCCEEEECCCCCSSC--CTTHHHHHTTCCSEEEEC
T ss_pred             CCCcEEEEEeecCCCCc--hHHHHHHeecCCcEEEEe
Confidence            344444    3459862  123344444566776654

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=99.75  E-value=5.2e-20  Score=179.03  Aligned_cols=169  Identities=10%  Similarity=0.026  Sum_probs=115.7

Q ss_pred             cceeeeeeE-EEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc-hHHhcCceEEEecCCCCCCCCCH
Q psy7366         359 KPAVNQISF-GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS-MDLVRSYIGYCPQFDALNDRLTP  436 (566)
Q Consensus       359 ~~~l~~isl-~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~v~q~~~l~~~~tv  436 (566)
                      .+.|+++.. .+++|++++|+||||||||||++.|++...+..|.|.+.+.+.... .......+++.+|..... .+.+
T Consensus         9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~   87 (235)
T 2w0m_A            9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEK-KLII   87 (235)
T ss_dssp             CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTT-TEEE
T ss_pred             chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhC-CEEE
Confidence            456888887 8999999999999999999999999998887778887766543211 001111223333221000 0000


Q ss_pred             HHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCC--EEEEeCCCCCC--CHHH
Q psy7366         437 REHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPP--LIFLDEPTSGM--DPGA  512 (566)
Q Consensus       437 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~--lllLDEPt~gL--D~~~  512 (566)
                               .....            ..++ ...   .....|.++.++...+.+...+|+  ++++||||+++  |+..
T Consensus        88 ---------~~~~~------------~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~  142 (235)
T 2w0m_A           88 ---------IDALM------------KEKE-DQW---SLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAM  142 (235)
T ss_dssp             ---------EECCC-----------------CTT---BCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGG
T ss_pred             ---------Eeccc------------cccC-cee---eecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHH
Confidence                     00000            0000 111   123449999998888888888999  99999999887  9999


Q ss_pred             HHHHHHHHHHHHh-CCcEEEEEccCH--------HHHHhhCCEEEEEECC
Q psy7366         513 RRFLWTCIERAVS-EGRCVILTSHNM--------EECEALCTKLTIMVNG  553 (566)
Q Consensus       513 ~~~l~~~l~~~~~-~g~tvl~vsHd~--------~~~~~~~drv~~l~~G  553 (566)
                      +..+++.|+++++ .|.|||++||+.        ..+..+||++++|+..
T Consensus       143 ~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~  192 (235)
T 2w0m_A          143 ARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM  192 (235)
T ss_dssp             HHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred             HHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence            9999999999865 599999999999        5588999999999754

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=99.75  E-value=1.6e-19  Score=169.48  Aligned_cols=136  Identities=12%  Similarity=0.022  Sum_probs=96.8

Q ss_pred             CCcchHHHHHhccccCCCccCCCCCccc---ccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQKVPGSNPTID---KNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNK   77 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~~~~~~~~~~---~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~   77 (566)
                      +||||++|++++++-  -.+.+......   .....+||++|++      ++.+++ + ... +..              
T Consensus        11 sGKTTLl~~l~g~l~--i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~~~-~~~--------------   65 (178)
T 1ye8_A           11 VGKTTLVKKIVERLG--KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-F-SSK-FFT--------------   65 (178)
T ss_dssp             SSHHHHHHHHHHHHG--GGEEEEEEEEEC------CCEEEEEET------TCCEEE-E-EET-TCC--------------
T ss_pred             CCHHHHHHHHHHHhC--CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-H-Hhh-cCC--------------
Confidence            599999999999872  11111111000   2235799999986      222222 1 000 000              


Q ss_pred             cCCCcccccccccCChhHHHHHHHHHH-----HhCCCCEEEeeC--CCCCCCHHHHHHHHHHHHHHHhCCCEEEEec---
Q psy7366          78 FALGHYSDREVRTLSGGNKRKLSTAIA-----LLGNPPLIFLDE--PTSGMDPGARRFLWTCIERAVSEGRCVILTS---  147 (566)
Q Consensus        78 ~gl~~~~~~~~~~LSgG~kqrl~iA~a-----l~~~p~vLlLDE--Pt~~LD~~~~~~l~~~l~~l~~~g~tviiis---  147 (566)
                        -....++++.+||||||||++||+|     ++.+|++|||||  ||++||+..++.+.+++++   .+.|+|+++   
T Consensus        66 --~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~---~~~~~i~~~H~~  140 (178)
T 1ye8_A           66 --SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD---PNVNVVATIPIR  140 (178)
T ss_dssp             --CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC---TTSEEEEECCSS
T ss_pred             --ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc---CCCeEEEEEccC
Confidence              0135678899999999999999996     999999999999  9999999999999998864   577788888   


Q ss_pred             CChhHHHhhcCEEEEEeCCEEEE
Q psy7366         148 HNMEECEALCTKLTIMVNGQFTC  170 (566)
Q Consensus       148 H~~~~~~~~~d~i~vl~~G~i~~  170 (566)
                      |+++++..+|||    .+|+++.
T Consensus       141 h~~~~~~~i~~r----~~~~i~~  159 (178)
T 1ye8_A          141 DVHPLVKEIRRL----PGAVLIE  159 (178)
T ss_dssp             CCSHHHHHHHTC----TTCEEEE
T ss_pred             CCchHHHHHHhc----CCcEEEE
Confidence            599999999998    5566654

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.74  E-value=1.4e-18  Score=178.58  Aligned_cols=84  Identities=26%  Similarity=0.309  Sum_probs=75.4

Q ss_pred             cccccccCChhHHHHHHHHHHHh----CCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHHhhcCE
Q psy7366          84 SDREVRTLSGGNKRKLSTAIALL----GNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTK  159 (566)
Q Consensus        84 ~~~~~~~LSgG~kqrl~iA~al~----~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~~~d~  159 (566)
                      .++++.+||+|||||++||+||+    .+|++|||||||++||+..++.+.++|+++ ..|.+||++||+. ++.++||+
T Consensus       213 ~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~-~~~~~vi~~tH~~-~~~~~~d~  290 (322)
T 1e69_A          213 RDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKEN-SKHTQFIVITHNK-IVMEAADL  290 (322)
T ss_dssp             CCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHH-TTTSEEEEECCCT-TGGGGCSE
T ss_pred             ccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCCeEEEEECCH-HHHhhCce
Confidence            56788999999999999999997    689999999999999999999999999998 4589999999996 46678998


Q ss_pred             E--EEEeCCEEE
Q psy7366         160 L--TIMVNGQFT  169 (566)
Q Consensus       160 i--~vl~~G~i~  169 (566)
                      +  ++|.+|...
T Consensus       291 ~~~v~~~~g~s~  302 (322)
T 1e69_A          291 LHGVTMVNGVSA  302 (322)
T ss_dssp             EEEEEESSSCEE
T ss_pred             EEEEEEeCCEEE
Confidence            7  888888654

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=99.74  E-value=6.9e-20  Score=190.18  Aligned_cols=163  Identities=15%  Similarity=0.137  Sum_probs=105.6

Q ss_pred             ceeeee-eEEEeCCcEEEEEcCCCCcHHHHHHHHHCCC--CCCc----cE-EEEcCccCCCchHHhcCceEEEecCCCCC
Q psy7366         360 PAVNQI-SFGVGRGECFGLLGLNGAGKTTTFKMLTGAI--KPTS----GN-AYVMNHSIRDSMDLVRSYIGYCPQFDALN  431 (566)
Q Consensus       360 ~~l~~i-sl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~--~~~~----G~-i~~~g~~~~~~~~~~~~~i~~v~q~~~l~  431 (566)
                      ..|+.+ ++.|++|++++|+||||||||||++.+++..  +|++    |+ |++++++...     ++++++++|.+.++
T Consensus       118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~-----~~~i~~i~q~~~~~  192 (349)
T 1pzn_A          118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR-----PERIREIAQNRGLD  192 (349)
T ss_dssp             HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCC-----HHHHHHHHHTTTCC
T ss_pred             HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCC-----HHHHHHHHHHcCCC
Confidence            356665 6899999999999999999999999999998  6776    67 8999876421     23577788877655


Q ss_pred             CCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHc-------CCCCEEEEeCC
Q psy7366         432 DRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALL-------GNPPLIFLDEP  504 (566)
Q Consensus       432 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~-------~~p~lllLDEP  504 (566)
                      +. ++.+|+.+..   ...                            |.+++|++.++++++       .+|++||+|||
T Consensus       193 ~~-~v~~ni~~~~---~~~----------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~  240 (349)
T 1pzn_A          193 PD-EVLKHIYVAR---AFN----------------------------SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSL  240 (349)
T ss_dssp             HH-HHGGGEEEEE---CCS----------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETS
T ss_pred             HH-HHhhCEEEEe---cCC----------------------------hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCc
Confidence            43 5555543321   000                            234444555555544       79999999999


Q ss_pred             CCCCCHHH------------HHHHHHHHHHHHh-CCcEEEEEccCHHHHHhhCCEEEEEECCEEEEec
Q psy7366         505 TSGMDPGA------------RRFLWTCIERAVS-EGRCVILTSHNMEECEALCTKLTIMVNGQFTCLG  559 (566)
Q Consensus       505 t~gLD~~~------------~~~l~~~l~~~~~-~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g  559 (566)
                      |+++|+..            ...++..|.++++ .|.|||+++|.......+++.......|++++++
T Consensus       241 ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~  308 (349)
T 1pzn_A          241 TSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHS  308 (349)
T ss_dssp             STTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTT
T ss_pred             hHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeec
Confidence            99999862            3556666666655 4999999999987665444444555556554443

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.72  E-value=5.5e-20  Score=176.90  Aligned_cols=131  Identities=12%  Similarity=0.114  Sum_probs=81.1

Q ss_pred             CCcchHHHHHhccccCCC-ccCCCCCc--ccccccceeEEcCCCCCCCCCCHHHHH-HHHH----HhcCCChhhHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ-KVPGSNPT--IDKNLSYIGYCPQFDALNDRLTPREHL-EFYS----RVRNVPSVLLNTIVN   72 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~-~~~~~~~~--~~~~~~~ig~v~Q~~~l~~~~tv~e~l-~~~~----~~~~~~~~~~~~~~~   72 (566)
                      .||||++|+++|+ .|++ .+......  .......|||+||++        .||+ .+..    ......   ...++.
T Consensus        33 sGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~--------~enl~~~~~~~~~~~~~~~---~~~~~~  100 (208)
T 3b85_A           33 SGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTL--------NEKIDPYLRPLHDALRDMV---EPEVIP  100 (208)
T ss_dssp             SSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC--------------CTTTHHHHHHHTTTS---CTTHHH
T ss_pred             CCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCH--------HHHHHHHHHHHHHHHHHhc---cHHHHH
Confidence            5999999999999 7654 22211000  012235699999987        3444 2211    111110   123456


Q ss_pred             HHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhH
Q psy7366          73 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEE  152 (566)
Q Consensus        73 ~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~  152 (566)
                      ++++. |+             |||||++||+||+.+|++|||||||++    ++.+++++|+++ ++|.||| +|||+++
T Consensus       101 ~~l~~-gl-------------Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-~~g~tii-vtHd~~~  160 (208)
T 3b85_A          101 KLMEA-GI-------------VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-GFGSKMV-VTGDITQ  160 (208)
T ss_dssp             HHHHT-TS-------------EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-CTTCEEE-EEEC---
T ss_pred             HHHHh-CC-------------chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-cCCCEEE-EECCHHH
Confidence            66665 43             999999999999999999999999999    999999999988 6789999 9999987


Q ss_pred             HHhhcCEEEEEeCCE
Q psy7366         153 CEALCTKLTIMVNGQ  167 (566)
Q Consensus       153 ~~~~~d~i~vl~~G~  167 (566)
                      ++.    +....+|.
T Consensus       161 ~~~----~~~~~~G~  171 (208)
T 3b85_A          161 VDL----PGGQKSGL  171 (208)
T ss_dssp             -------------CC
T ss_pred             HhC----cCCCCCcH
Confidence            653    33445554

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.72  E-value=6.2e-20  Score=175.92  Aligned_cols=174  Identities=14%  Similarity=0.064  Sum_probs=102.5

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCC-----CCCccEEEEcCccCCCchHH
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI-----KPTSGNAYVMNHSIRDSMDL  416 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~-----~~~~G~i~~~g~~~~~~~~~  416 (566)
                      +|+++|+++.|+     ..++++  |.+.+|.+++|+|+||||||||++.|+|..     .|+.|.+.+.+.-..     
T Consensus         3 ~l~~~~~~~~~~-----~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~-----   70 (210)
T 1pui_A            3 NLNYQQTHFVMS-----APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEV-----   70 (210)
T ss_dssp             --------CEEE-----ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEE-----
T ss_pred             chhhhhhhheee-----cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEe-----
Confidence            478999999995     257777  889999999999999999999999999998     788887654321000     


Q ss_pred             hcCceEEEecCCCCCC----CCC---HHHHHHHHHHh-c-----------CCCchHHHHHHHHHHHHcCCCCc-cccCcC
Q psy7366         417 VRSYIGYCPQFDALND----RLT---PREHLEFYSRV-R-----------NVPSVLLNTIVNESLNKFALGHY-SDREVR  476 (566)
Q Consensus       417 ~~~~i~~v~q~~~l~~----~~t---v~e~l~~~~~~-~-----------~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~  476 (566)
                       ...+-++ +-+....    ...   ....+..+... .           ..........+.+++...++... ...++.
T Consensus        71 -~~~~~l~-Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D  148 (210)
T 1pui_A           71 -ADGKRLV-DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKAD  148 (210)
T ss_dssp             -ETTEEEE-ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGG
T ss_pred             -cCCEEEE-ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEeccc
Confidence             0011111 1111100    000   01111111110 0           00111222345566777777643 367789


Q ss_pred             cCChhHHHH-HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcE
Q psy7366         477 TLSGGNKRK-LSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC  529 (566)
Q Consensus       477 ~LSgGqkqr-v~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~t  529 (566)
                      .+|+||+|| +..+++++.+|+++++|||||++|+.....+++.|.++..+|.+
T Consensus       149 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~  202 (210)
T 1pui_A          149 KLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP  202 (210)
T ss_dssp             GSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred             CCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence            999999999 89999999999999999999999999999999999988765543

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=99.71  E-value=2.2e-17  Score=166.14  Aligned_cols=154  Identities=14%  Similarity=0.097  Sum_probs=107.4

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhc
Q psy7366         368 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVR  447 (566)
Q Consensus       368 ~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~  447 (566)
                      .+++|++++|+||||||||||++.+++...  .|.+. .|.+...     ...+.|+..+...   ..+.+.+.-. . .
T Consensus        26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~~-----~~~v~~~~~e~~~---~~~~~r~~~~-g-~   92 (279)
T 1nlf_A           26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGELP-----TGPVIYLPAEDPP---TAIHHRLHAL-G-A   92 (279)
T ss_dssp             TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCCC-----CCCEEEEESSSCH---HHHHHHHHHH-H-T
T ss_pred             CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccCC-----CccEEEEECCCCH---HHHHHHHHHH-H-h
Confidence            478999999999999999999999998654  46653 3443311     2357787765321   0111111110 0 1


Q ss_pred             CCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCC--CCCHHHH---HHHHHHHHH
Q psy7366         448 NVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTS--GMDPGAR---RFLWTCIER  522 (566)
Q Consensus       448 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~--gLD~~~~---~~l~~~l~~  522 (566)
                      ...    .....++++.+.+.+..++++..||+||+|++   ++++.+|+++|+||||+  ++|+...   ..+++.|.+
T Consensus        93 ~~~----~~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~  165 (279)
T 1nlf_A           93 HLS----AEERQAVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEA  165 (279)
T ss_dssp             TSC----HHHHHHHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHH
T ss_pred             hcC----hhhhhhccCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHH
Confidence            111    12345678888888778889999999998765   68888999999999999  9998544   778888888


Q ss_pred             HHh-CCcEEEEEccCHHHHH
Q psy7366         523 AVS-EGRCVILTSHNMEECE  541 (566)
Q Consensus       523 ~~~-~g~tvl~vsHd~~~~~  541 (566)
                      +++ .|+|||++||+.....
T Consensus       166 l~~~~g~tvi~i~H~~~~~~  185 (279)
T 1nlf_A          166 IAADTGCSIVFLHHASKGAA  185 (279)
T ss_dssp             HHHHHCCEEEEEEEC-----
T ss_pred             HHHHcCCEEEEEecCCCccc
Confidence            864 4999999999987653

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=99.70  E-value=2.4e-18  Score=178.53  Aligned_cols=135  Identities=19%  Similarity=0.161  Sum_probs=97.1

Q ss_pred             ceeeeeeE-------EEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCC-ccEEEEcCccCCCchHHhcCceEEEecCCCCC
Q psy7366         360 PAVNQISF-------GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT-SGNAYVMNHSIRDSMDLVRSYIGYCPQFDALN  431 (566)
Q Consensus       360 ~~l~~isl-------~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~-~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~  431 (566)
                      +.|+++.+       .+.+|++++|+||||||||||+++|+|+++|+ .|.|...+.++...   .+...++++|.....
T Consensus       104 ~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~---~~~~~~~v~q~~~~~  180 (356)
T 3jvv_A          104 LTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFV---HESKKCLVNQREVHR  180 (356)
T ss_dssp             CCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSC---CCCSSSEEEEEEBTT
T ss_pred             CCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhh---hhccccceeeeeecc
Confidence            34555554       67899999999999999999999999999987 56766555444221   122345566543211


Q ss_pred             CCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHH
Q psy7366         432 DRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPG  511 (566)
Q Consensus       432 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~  511 (566)
                      ...+..+                                                +||+||..+|++||+||||   |..
T Consensus       181 ~~~~~~~------------------------------------------------~La~aL~~~PdvillDEp~---d~e  209 (356)
T 3jvv_A          181 DTLGFSE------------------------------------------------ALRSALREDPDIILVGEMR---DLE  209 (356)
T ss_dssp             TBSCHHH------------------------------------------------HHHHHTTSCCSEEEESCCC---SHH
T ss_pred             ccCCHHH------------------------------------------------HHHHHhhhCcCEEecCCCC---CHH
Confidence            1112111                                                9999999999999999999   665


Q ss_pred             HHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECC
Q psy7366         512 ARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNG  553 (566)
Q Consensus       512 ~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G  553 (566)
                      ..+    .+.+++..|.+||+++|+.+.+ ..|||++.|..|
T Consensus       210 ~~~----~~~~~~~~G~~vl~t~H~~~~~-~~~dRli~l~~~  246 (356)
T 3jvv_A          210 TIR----LALTAAETGHLVFGTLHTTSAA-KTIDRVVDVFPA  246 (356)
T ss_dssp             HHH----HHHHHHHTTCEEEEEESCSSHH-HHHHHHHHTSCH
T ss_pred             HHH----HHHHHHhcCCEEEEEEccChHH-HHHHHHhhhcCc
Confidence            543    3444566799999999999887 679999887544

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.68  E-value=3.9e-18  Score=158.92  Aligned_cols=80  Identities=14%  Similarity=0.067  Sum_probs=67.9

Q ss_pred             cCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHH----------------HHHHHHHHHHHHHhCCC
Q psy7366          78 FALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPG----------------ARRFLWTCIERAVSEGR  141 (566)
Q Consensus        78 ~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~----------------~~~~l~~~l~~l~~~g~  141 (566)
                      .|.....+. ....|+|||||++||+|++.+|++|+|||||++||+.                .+..+.+.|++++++|.
T Consensus        72 ~g~~~~~~~-~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~  150 (171)
T 4gp7_A           72 LGKLTVVDA-TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGF  150 (171)
T ss_dssp             TTCCEEEES-CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTC
T ss_pred             CCCeEEEEC-CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCC
Confidence            454433332 3456999999999999999999999999999999999                67999999998877799


Q ss_pred             EEEEecCChhHHHhhcCE
Q psy7366         142 CVILTSHNMEECEALCTK  159 (566)
Q Consensus       142 tviiisH~~~~~~~~~d~  159 (566)
                      |+|++|||++++.. +++
T Consensus       151 tvi~vtH~~~~~~~-~~~  167 (171)
T 4gp7_A          151 RYVYILNSPEEVEE-VVF  167 (171)
T ss_dssp             SEEEEECSHHHHHH-EEE
T ss_pred             cEEEEeCCHHHhhh-hhh
Confidence            99999999999976 344

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.68  E-value=1e-18  Score=184.64  Aligned_cols=164  Identities=13%  Similarity=0.040  Sum_probs=99.5

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCce
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYI  421 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i  421 (566)
                      ++.++||++.|+    ++.+++++||+|      +|+|+||||||||+++|+|...++.|.   +|..+..........+
T Consensus        11 ~l~~~~l~~~y~----~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~---~~~~~~~~~t~~~~~i   77 (418)
T 2qag_C           11 YVGFANLPNQVY----RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEY---PGPSHRIKKTVQVEQS   77 (418)
T ss_dssp             ----CCCCCCTT----TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCC---CSCC-----CCEEEEE
T ss_pred             cEEEEecceeEC----CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCC---CCcccCCccceeeeeE
Confidence            588999999996    567999999998      999999999999999999998865551   2222211111113458


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCC---E
Q psy7366         422 GYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPP---L  498 (566)
Q Consensus       422 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~---l  498 (566)
                      +|++|++.+++.+|+.||+.+......   ......+.+.++            ..++.+++||+.|||+++.+|+   +
T Consensus        78 ~~v~q~~~~~~~Ltv~Dt~g~~~~~~~---~~~~~~i~~~i~------------~~~~~~l~qr~~IaRal~~d~~~~vl  142 (418)
T 2qag_C           78 KVLIKEGGVQLLLTIVDTPGFGDAVDN---SNCWQPVIDYID------------SKFEDYLNAESRVNRRQMPDNRVQCC  142 (418)
T ss_dssp             ECC------CEEEEEEECC--------------CHHHHHHHH------------HHHHHHTTTSCC-CCCCCCCC-CCEE
T ss_pred             EEEEecCCcccceeeeechhhhhhccc---hhhHHHHHHHHH------------HHHHHHHHHHHHHHHHhccCCCeeEE
Confidence            999998888878899888766432111   000011112221            1455677889999999999999   9


Q ss_pred             EEEeCCC-CCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHH
Q psy7366         499 IFLDEPT-SGMDPGARRFLWTCIERAVSEGRCVILTSHNME  538 (566)
Q Consensus       499 llLDEPt-~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~  538 (566)
                      |++|||| .+||+...    ++++.+.. +.+||+|.|-.+
T Consensus       143 L~ldePt~~~L~~~d~----~~lk~L~~-~v~iIlVinK~D  178 (418)
T 2qag_C          143 LYFIAPSGHGLKPLDI----EFMKRLHE-KVNIIPLIAKAD  178 (418)
T ss_dssp             EEECCC-CCSCCHHHH----HHHHHHTT-TSEEEEEEESTT
T ss_pred             EEEecCcccCCCHHHH----HHHHHHhc-cCcEEEEEEccc
Confidence            9999999 69998874    33445443 678888877654

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=99.67  E-value=1.2e-18  Score=168.93  Aligned_cols=141  Identities=16%  Similarity=0.139  Sum_probs=96.8

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHHCCCCC--CccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCH----HHHHH
Q psy7366         368 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKP--TSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTP----REHLE  441 (566)
Q Consensus       368 ~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv----~e~l~  441 (566)
                      ..++|++++|+||||||||||+++|+|+++|  ..|.|.+.+++...   ..+..++|+||++..|+.+++    .||+.
T Consensus        12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~---~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~   88 (219)
T 1s96_A           12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP---GEVHGEHYFFVNHDEFKEMISRDAFLEHAE   88 (219)
T ss_dssp             ---CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT---TCCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred             cCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc---ccccCceEEECCHHHHHHHHhcCHHHHHHH
Confidence            5689999999999999999999999999986  68999998876532   124579999997655444333    22222


Q ss_pred             HHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy7366         442 FYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIE  521 (566)
Q Consensus       442 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~  521 (566)
                      +....++.                                .++.   +..++..++++|||     ||+.++..+++.+.
T Consensus        89 ~~~~~yg~--------------------------------~~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~  128 (219)
T 1s96_A           89 VFGNYYGT--------------------------------SREA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP  128 (219)
T ss_dssp             ETTEEEEE--------------------------------EHHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT
T ss_pred             HHhccCCC--------------------------------CHHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc
Confidence            11111111                                1111   23334457999999     99999999988775


Q ss_pred             HHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         522 RAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       522 ~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                          ++.+|+++||+++++..   |+  +.+|    .++++++
T Consensus       129 ----~~~tI~i~th~~~~l~~---Rl--~~rG----~~~~e~i  158 (219)
T 1s96_A          129 ----HARSIFILPPSKIELDR---RL--RGRG----QDSEEVI  158 (219)
T ss_dssp             ----TCEEEEEECSSHHHHHH---HH--HTTS----CSCHHHH
T ss_pred             ----CCEEEEEECCCHHHHHH---HH--HHcC----CCCHHHH
Confidence                58999999999998876   32  5566    4455443

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=99.67  E-value=6.2e-17  Score=167.47  Aligned_cols=80  Identities=34%  Similarity=0.471  Sum_probs=73.4

Q ss_pred             cccccccCChhHHH------HHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHHhhc
Q psy7366          84 SDREVRTLSGGNKR------KLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALC  157 (566)
Q Consensus        84 ~~~~~~~LSgG~kq------rl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~~~  157 (566)
                      .++++.+|||||||      |+++|++|+.+|++|||||||++||+..+..+.++|+++.+.|.|||+|||+. ++.+.|
T Consensus       242 ~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~-~~~~~~  320 (339)
T 3qkt_A          242 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE-ELKDAA  320 (339)
T ss_dssp             EEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG-GGGGGC
T ss_pred             CcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH-HHHHhC
Confidence            46789999999999      67888899999999999999999999999999999999877789999999995 567899


Q ss_pred             CEEEEEe
Q psy7366         158 TKLTIMV  164 (566)
Q Consensus       158 d~i~vl~  164 (566)
                      |+|++|+
T Consensus       321 d~~~~l~  327 (339)
T 3qkt_A          321 DHVIRIS  327 (339)
T ss_dssp             SEEEEEE
T ss_pred             CEEEEEE
Confidence            9999996

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=99.67  E-value=4.7e-21  Score=200.54  Aligned_cols=176  Identities=10%  Similarity=0.031  Sum_probs=112.0

Q ss_pred             eeeeeEEEeC--CcEEEEEcCCCCcHHHHHHHHHCCCCCCc----cEEEEcC----ccCCCchHHhcCceEEEecCCCCC
Q psy7366         362 VNQISFGVGR--GECFGLLGLNGAGKTTTFKMLTGAIKPTS----GNAYVMN----HSIRDSMDLVRSYIGYCPQFDALN  431 (566)
Q Consensus       362 l~~isl~i~~--Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~----G~i~~~g----~~~~~~~~~~~~~i~~v~q~~~l~  431 (566)
                      .+.|+++|.+  |+.++|+||||||||||+++|+|+++|++    |+|++++    .++......+ ..|+|++|++.++
T Consensus       158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~~~~  236 (365)
T 1lw7_A          158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRYIDY  236 (365)
T ss_dssp             GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHHHHH
T ss_pred             hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHHHHH
Confidence            4578999999  99999999999999999999999999999    7776642    2210000001 1133332221100


Q ss_pred             CCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHc-CCCCEEEEeC---CC--
Q psy7366         432 DRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALL-GNPPLIFLDE---PT--  505 (566)
Q Consensus       432 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~-~~p~lllLDE---Pt--  505 (566)
                      . .|+.+|+.+                      ++ .+..+..+..+|+|++|+..+++++. .+|++++|||   |+  
T Consensus       237 ~-~t~~~nl~~----------------------~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~  292 (365)
T 1lw7_A          237 A-VRHSHKIAF----------------------ID-TDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVD  292 (365)
T ss_dssp             H-HHHCSSEEE----------------------ES-SCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC---
T ss_pred             H-HhccCCEEE----------------------Ee-CCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCccc
Confidence            0 111111100                      00 11222334456777788888888774 7999999999   65  


Q ss_pred             ----CCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         506 ----SGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       506 ----~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                          .++|+..+..+.+.|.++.++ |.+||+++|. ++..++|+++.++++  +...+++++++
T Consensus       293 ~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~~~~r~~~~i~~i~~--~l~~~~~~~~~  354 (365)
T 1lw7_A          293 DGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-SYLDRYNQVKAVIEK--VLNEEEISELQ  354 (365)
T ss_dssp             --------CCSHHHHHHHHHHHHHGGGCCCEEEECS-SHHHHHHHHHHHHHH--HTSCCCCSSCC
T ss_pred             CCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHHH--HhcccchhHhh
Confidence                589999999999999887654 8999999986 566778887766653  44455555553

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=99.67  E-value=2.9e-20  Score=178.86  Aligned_cols=151  Identities=11%  Similarity=0.036  Sum_probs=113.2

Q ss_pred             CCcchHHHHHhccccCCCccC----CCCCcccccccceeEEcCCCCCCCCCCHHHHHHHH----H--HhcCCChhhHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQKVP----GSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFY----S--RVRNVPSVLLNTI   70 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~~~----~~~~~~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~----~--~~~~~~~~~~~~~   70 (566)
                      .||||++|+++|++. .-...    +..+. .....+++|++|++.+++.+|+.+++.++    .  ..++.+..+..++
T Consensus        31 sGKSTLl~~l~gl~~-~i~~~~~~~~~~~~-~~~~~~i~~~~q~~~~~~~~~~~~~l~~~~~~~~n~~~~g~~~~~~~~~  108 (207)
T 1znw_A           31 VGKSTVVRCLRERIP-NLHFSVSATTRAPR-PGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAA  108 (207)
T ss_dssp             SSHHHHHHHHHHHST-TCEECCCEESSCCC-TTCCBTTTBEECCHHHHHHHHHTTCEEEEEEEGGGTEEEEEEHHHHHHH
T ss_pred             CCHHHHHHHHHhhCC-ceEEcccccccCCc-ccccCCCeeEecCHHHHHHHHhcCCceeehhhcCchhhcCCcHHHHHHH
Confidence            599999999999873 11111    11111 11235799999999888777877776322    1  2234455556666


Q ss_pred             HHHH------HHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCC----CHHHHHHHHHHHHHHHh-C
Q psy7366          71 VNES------LNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGM----DPGARRFLWTCIERAVS-E  139 (566)
Q Consensus        71 ~~~~------l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~L----D~~~~~~l~~~l~~l~~-~  139 (566)
                      +.+.      ++.+|+....++++.+||           +|+.+|++++|||||++|    |+..+++++++++++++ .
T Consensus       109 ~~~~~~~~~~l~~~gl~~~~~~~~~~lS-----------~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~  177 (207)
T 1znw_A          109 AATGVPVLIEVDLAGARAIKKTMPEAVT-----------VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQG  177 (207)
T ss_dssp             HHHTCCEEEECCHHHHHHHHHHCTTSEE-----------EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGG
T ss_pred             HHcCCeEEEEeCHHHHHHHHHhcCCcEE-----------EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhc
Confidence            6665      666677666677888888           899999999999999998    78899999999999964 5


Q ss_pred             CCEEEEecCChhHHHhhcCEEEEEe
Q psy7366         140 GRCVILTSHNMEECEALCTKLTIMV  164 (566)
Q Consensus       140 g~tviiisH~~~~~~~~~d~i~vl~  164 (566)
                      |.|+|++|||++++..+||||++|.
T Consensus       178 g~tvi~vtHdl~~~~~~~d~i~~l~  202 (207)
T 1znw_A          178 DFDKVVVNRRLESACAELVSLLVGT  202 (207)
T ss_dssp             GSSEEEECSSHHHHHHHHHHHHC--
T ss_pred             cCcEEEECCCHHHHHHHHHHHHHhc
Confidence            8999999999999999999999984

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=99.65  E-value=5.8e-21  Score=180.71  Aligned_cols=172  Identities=19%  Similarity=0.152  Sum_probs=114.2

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCc
Q psy7366         372 GECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPS  451 (566)
Q Consensus       372 Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~  451 (566)
                      |++++|+||||||||||+++|++   +.+|.+.++|.++..     ...+++++|....++..++++++.+.........
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   73 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINH-----MVVGGYRPPWESDELLALTWKNITDLTVNFLLAQ   73 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHT-----TCCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhh-----hhccccccCccchhHHHHHHHHHHHHHHHHHhcC
Confidence            68999999999999999999997   668999999876422     1235677776544444577777765432110000


Q ss_pred             hHHHHHHHHHHHHcCCCCccccCcCcC--ChhHHHHHHHHH------HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy7366         452 VLLNTIVNESLNKFALGHYSDREVRTL--SGGNKRKLSTAI------ALLGNPPLIFLDEPTSGMDPGARRFLWTCIERA  523 (566)
Q Consensus       452 ~~~~~~~~~~l~~~~l~~~~~~~~~~L--SgGqkqrv~la~------al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~  523 (566)
                      .      ..+++.+. .....+....+  |+|++|++.++.      +++.+|+...+|+   ++|+..+.. ++.+..+
T Consensus        74 ~------~~ild~~~-~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~  142 (189)
T 2bdt_A           74 N------DVVLDYIA-FPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESK  142 (189)
T ss_dssp             C------EEEEESCC-CHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHT
T ss_pred             C------cEEEeecc-CHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhc
Confidence            0      00011010 00011222344  889988888887      8888888888884   899988888 8888887


Q ss_pred             HhCCcEEEEEccC-HHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         524 VSEGRCVILTSHN-MEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       524 ~~~g~tvl~vsHd-~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      .+.+.++|.+||. ++++.++||+|+  ++|+++.+|+++-+
T Consensus       143 ~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~  182 (189)
T 2bdt_A          143 GIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPL  182 (189)
T ss_dssp             TCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC------
T ss_pred             CCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCch
Confidence            6567899999999 999999999998  99999999988754

>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*

Probab=99.65  E-value=7e-16  Score=143.58  Aligned_cols=83  Identities=17%  Similarity=0.197  Sum_probs=71.5

Q ss_pred             cccccccCChhHHHHHHHHHHHh----CCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHHhhcCE
Q psy7366          84 SDREVRTLSGGNKRKLSTAIALL----GNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTK  159 (566)
Q Consensus        84 ~~~~~~~LSgG~kqrl~iA~al~----~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~~~d~  159 (566)
                      ..+.+..||||||||++||++|+    .+|+++||||||++||+..+..+.++|+++.+ +.++|+|||+... ...||+
T Consensus        58 ~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~~~-~~~ad~  135 (173)
T 3kta_B           58 DVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRDVM-MANADK  135 (173)
T ss_dssp             SCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCHHH-HTTCSE
T ss_pred             cccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecHHH-HHhCCE
Confidence            35678999999999999999997    45799999999999999999999999999854 5789999999754 578999


Q ss_pred             EEEE--eCCEE
Q psy7366         160 LTIM--VNGQF  168 (566)
Q Consensus       160 i~vl--~~G~i  168 (566)
                      ++.+  ++|..
T Consensus       136 i~~v~~~~g~s  146 (173)
T 3kta_B          136 IIGVSMRDGVS  146 (173)
T ss_dssp             EEEEEEETTEE
T ss_pred             EEEEEecCCEE
Confidence            9855  56754

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.64  E-value=2.4e-18  Score=181.32  Aligned_cols=145  Identities=13%  Similarity=0.022  Sum_probs=112.4

Q ss_pred             CCcchHHHHHhccccCCCc-cCCCCCcccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHHHcC
Q psy7366           1 MGLTTTPKRVVTLLLTTQK-VPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFA   79 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~-~~~~~~~~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g   79 (566)
                      .||||++|+++|++.+.+. +.....  ...  +.++++|++ .++.+|+.|++.+..     +    ..+++++++.++
T Consensus        80 aGKSTLln~L~Gl~~p~~GsI~~~g~--~~t--~~~~v~q~~-~~~~ltv~D~~g~~~-----~----~~~~~~~L~~~~  145 (413)
T 1tq4_A           80 SGKSSFINTLRGIGNEEEGAAKTGVV--EVT--MERHPYKHP-NIPNVVFWDLPGIGS-----T----NFPPDTYLEKMK  145 (413)
T ss_dssp             SSHHHHHHHHHTCCTTSTTSCCCCC--------CCCEEEECS-SCTTEEEEECCCGGG-----S----SCCHHHHHHHTT
T ss_pred             CcHHHHHHHHhCCCCccCceEEECCe--ecc--eeEEecccc-ccCCeeehHhhcccc-----h----HHHHHHHHHHcC
Confidence            5999999999999876552 211111  111  238899985 467888888775431     1    234678899999


Q ss_pred             CCcccccccccCChh--HHHHHHHHHHHhC----------CCCEEEeeCCCCCCCHHHHHHHHHHHHHHH-----hCC--
Q psy7366          80 LGHYSDREVRTLSGG--NKRKLSTAIALLG----------NPPLIFLDEPTSGMDPGARRFLWTCIERAV-----SEG--  140 (566)
Q Consensus        80 l~~~~~~~~~~LSgG--~kqrl~iA~al~~----------~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~-----~~g--  140 (566)
                      +... +..+. ||+|  |+||++||+||++          +|++++|||||++||+..++++++.|+++.     +.|  
T Consensus       146 L~~~-~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~  223 (413)
T 1tq4_A          146 FYEY-DFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIA  223 (413)
T ss_dssp             GGGC-SEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCS
T ss_pred             CCcc-CCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            8754 33444 9999  9999999999999          999999999999999999999999999984     333  


Q ss_pred             --CEEEEecCChhH--HHhhcCEEE
Q psy7366         141 --RCVILTSHNMEE--CEALCTKLT  161 (566)
Q Consensus       141 --~tviiisH~~~~--~~~~~d~i~  161 (566)
                        .+|+++||++++  ++++||+|.
T Consensus       224 ~~~iiliSsh~l~~~~~e~L~d~I~  248 (413)
T 1tq4_A          224 EPPIFLLSNKNVCHYDFPVLMDKLI  248 (413)
T ss_dssp             SCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred             CCcEEEEecCcCCccCHHHHHHHHH
Confidence              578899999998  999999985

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.64  E-value=3.1e-18  Score=180.36  Aligned_cols=179  Identities=15%  Similarity=0.139  Sum_probs=116.7

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcE--EEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhc
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGEC--FGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVR  418 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~--~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~  418 (566)
                      .+++.+ ++.|+    +.+ |+++||+|++|++  ++|+||||||||||+++|+|+.        ++|.++.. .....+
T Consensus        16 ~l~~~~-~~~y~----~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~   81 (427)
T 2qag_B           16 TVPLAG-HVGFD----SLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQL   81 (427)
T ss_dssp             -CCCCC-CC-CC------C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEE
T ss_pred             eEEEee-EEEEC----Cee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceE
Confidence            356666 77785    455 9999999999999  9999999999999999999984        22333221 111224


Q ss_pred             CceEEEecCCCCCCCCCHHHHHHHHHHhcC-C-Cc---hHHHHHHHHHHHHc-CCCC----ccccCc-----------Cc
Q psy7366         419 SYIGYCPQFDALNDRLTPREHLEFYSRVRN-V-PS---VLLNTIVNESLNKF-ALGH----YSDREV-----------RT  477 (566)
Q Consensus       419 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~-~-~~---~~~~~~~~~~l~~~-~l~~----~~~~~~-----------~~  477 (566)
                      ..++|++|++.+++.+|+.||+.++..... . ..   ......+.+++... ++..    ..+.++           ..
T Consensus        82 ~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~  161 (427)
T 2qag_B           82 QSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHS  161 (427)
T ss_dssp             EEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC--
T ss_pred             eeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCC
Confidence            479999999888888899888765421100 0 00   01233455566654 4431    122221           24


Q ss_pred             CChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCcEEEEEccCH
Q psy7366         478 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER-AVSEGRCVILTSHNM  537 (566)
Q Consensus       478 LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~-~~~~g~tvl~vsHd~  537 (566)
                      |+-.+   +.++++|..+++++++|||+..|.+.....+.+.+++ +...|.+|+.+|.|-
T Consensus       162 l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~d  219 (427)
T 2qag_B          162 LKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTDD  219 (427)
T ss_dssp             -CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC---
T ss_pred             CCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCCc
Confidence            55555   7899999999999999999999999999999999986 767799999999764

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=99.63  E-value=6.6e-19  Score=173.88  Aligned_cols=144  Identities=16%  Similarity=0.102  Sum_probs=105.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHH---CCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHHHHH--
Q psy7366         371 RGECFGLLGLNGAGKTTTFKMLT---GAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSR--  445 (566)
Q Consensus       371 ~Ge~~~l~G~NGsGKSTLl~~i~---G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~--  445 (566)
                      ++++++|+||||||||||+++|+   |+..|+.|+|.++|.+...   .....+.+++|+..+++..++.+++.....  
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~  102 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAST---EVGEMAKQYIEKSLLVPDHVITRLMMSELENR  102 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTC---HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCC---hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence            47999999999999999999999   9999999999888765322   112235566777777888899999876432  


Q ss_pred             ------hcCCCchHHHHHHHHHHH--HcC------------CCCccccCcCcCChhHHHHHHHHHHH-cCCCCEEEEe--
Q psy7366         446 ------VRNVPSVLLNTIVNESLN--KFA------------LGHYSDREVRTLSGGNKRKLSTAIAL-LGNPPLIFLD--  502 (566)
Q Consensus       446 ------~~~~~~~~~~~~~~~~l~--~~~------------l~~~~~~~~~~LSgGqkqrv~la~al-~~~p~lllLD--  502 (566)
                            +.+.+...  ..+..+..  .++            +....++++.+|||    |+   +++ +.+|++++||  
T Consensus       103 ~~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~  173 (246)
T 2bbw_A          103 RGQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDV  173 (246)
T ss_dssp             TTSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTT
T ss_pred             CCCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCcccccccc
Confidence                  12233222  12222221  122            22335678899999    55   677 9999999999  


Q ss_pred             --CCCCCCCHHHHHHHHHHHHHHHhC
Q psy7366         503 --EPTSGMDPGARRFLWTCIERAVSE  526 (566)
Q Consensus       503 --EPt~gLD~~~~~~l~~~l~~~~~~  526 (566)
                        |||++||+.+++.+.+.++++.++
T Consensus       174 ~~EP~~~ld~~~~~~i~~~l~~~~~~  199 (246)
T 2bbw_A          174 TGEPLVQQEDDKPEAVAARLRQYKDV  199 (246)
T ss_dssp             TCCBCBCCGGGSHHHHHHHHHHHHHH
T ss_pred             cccccccCCCCcHHHHHHHHHHHHHh
Confidence              999999999999999999887654

>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*

Probab=99.63  E-value=1.2e-15  Score=141.95  Aligned_cols=82  Identities=17%  Similarity=0.211  Sum_probs=71.0

Q ss_pred             cccCcCcCChhHHHHHHHHHHHc----CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCE
Q psy7366         471 SDREVRTLSGGNKRKLSTAIALL----GNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTK  546 (566)
Q Consensus       471 ~~~~~~~LSgGqkqrv~la~al~----~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~dr  546 (566)
                      ..+++..||||||||++||++|+    .+|+++||||||+|||+.++..+.++|+++.+ +.++|++||+... ..+||+
T Consensus        58 ~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~~~-~~~ad~  135 (173)
T 3kta_B           58 DVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRDVM-MANADK  135 (173)
T ss_dssp             SCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCHHH-HTTCSE
T ss_pred             cccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecHHH-HHhCCE
Confidence            35678999999999999999997    45799999999999999999999999998864 4789999999765 568999


Q ss_pred             EEEE--ECCE
Q psy7366         547 LTIM--VNGQ  554 (566)
Q Consensus       547 v~~l--~~G~  554 (566)
                      ++.+  .+|.
T Consensus       136 i~~v~~~~g~  145 (173)
T 3kta_B          136 IIGVSMRDGV  145 (173)
T ss_dssp             EEEEEEETTE
T ss_pred             EEEEEecCCE
Confidence            9865  4665

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=99.62  E-value=5.6e-16  Score=169.30  Aligned_cols=80  Identities=16%  Similarity=0.213  Sum_probs=74.1

Q ss_pred             cccccC-ChhHHHHHHHHHHHhCCC--CEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHHhhcCEEEE
Q psy7366          86 REVRTL-SGGNKRKLSTAIALLGNP--PLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTI  162 (566)
Q Consensus        86 ~~~~~L-SgG~kqrl~iA~al~~~p--~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~~~d~i~v  162 (566)
                      +++.+| ||||+|||+||+||+.+|  ++|||||||+|||+.++..+.++|+++++ |.|||+|||+++.+. .|||+++
T Consensus       392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~~~~-~~d~~~~  469 (517)
T 4ad8_A          392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQIAA-RAHHHYK  469 (517)
T ss_dssp             CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHHHHH-HSSEEEE
T ss_pred             ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHH-hCCEEEE
Confidence            467788 999999999999999999  99999999999999999999999999977 899999999998775 6999999


Q ss_pred             EeCCE
Q psy7366         163 MVNGQ  167 (566)
Q Consensus       163 l~~G~  167 (566)
                      |+++.
T Consensus       470 ~~~~~  474 (517)
T 4ad8_A          470 VEKQV  474 (517)
T ss_dssp             EECCE
T ss_pred             Eeccc
Confidence            97654

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=99.62  E-value=5.1e-16  Score=149.62  Aligned_cols=153  Identities=15%  Similarity=0.130  Sum_probs=100.7

Q ss_pred             ceeeeeeE-EEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHH
Q psy7366         360 PAVNQISF-GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPRE  438 (566)
Q Consensus       360 ~~l~~isl-~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e  438 (566)
                      +.|+.+.. .+++|++++|+||||||||||++.|++  ++. +.                  +.|+..+..+    +...
T Consensus         7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~-~~------------------v~~i~~~~~~----~~~~   61 (220)
T 2cvh_A            7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSG-KK------------------VAYVDTEGGF----SPER   61 (220)
T ss_dssp             HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHC-SE------------------EEEEESSCCC----CHHH
T ss_pred             HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcC-Cc------------------EEEEECCCCC----CHHH
Confidence            34566554 689999999999999999999999999  222 22                  3344433211    2211


Q ss_pred             HHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhH--HHHHHHHHHHcCC-CCEEEEeCCCCCCCHHH---
Q psy7366         439 HLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGN--KRKLSTAIALLGN-PPLIFLDEPTSGMDPGA---  512 (566)
Q Consensus       439 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq--kqrv~la~al~~~-p~lllLDEPt~gLD~~~---  512 (566)
                       +.-.....+...       +++++.+        .+..+|+++  ++++..+++++.+ |+++|+||||+.+|+..   
T Consensus        62 -~~~~~~~~~~~~-------~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~  125 (220)
T 2cvh_A           62 -LVQMAETRGLNP-------EEALSRF--------ILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRS  125 (220)
T ss_dssp             -HHHHHHTTTCCH-------HHHHHHE--------EEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSS
T ss_pred             -HHHHHHhcCCCh-------HHHhhcE--------EEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchH
Confidence             111111111111       1122222        344556665  4678888899986 99999999999999743   


Q ss_pred             -----HHHHHHHHHHHHhC-CcEEEEEccCHH-------------HHHhhCCEEEEEECC
Q psy7366         513 -----RRFLWTCIERAVSE-GRCVILTSHNME-------------ECEALCTKLTIMVNG  553 (566)
Q Consensus       513 -----~~~l~~~l~~~~~~-g~tvl~vsHd~~-------------~~~~~~drv~~l~~G  553 (566)
                           ...+.+.|++++++ |.|||+++|...             .+..+||++++|+..
T Consensus       126 ~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~  185 (220)
T 2cvh_A          126 GLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL  185 (220)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence                 24455567777655 899999999865             567899999999754

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=99.60  E-value=2e-16  Score=154.84  Aligned_cols=146  Identities=18%  Similarity=0.222  Sum_probs=85.2

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHHC--CCCC-----CccEEEEcCccCCCc--hHHhcCceEEEecCCCCCCCCCHHH
Q psy7366         368 GVGRGECFGLLGLNGAGKTTTFKMLTG--AIKP-----TSGNAYVMNHSIRDS--MDLVRSYIGYCPQFDALNDRLTPRE  438 (566)
Q Consensus       368 ~i~~Ge~~~l~G~NGsGKSTLl~~i~G--~~~~-----~~G~i~~~g~~~~~~--~~~~~~~i~~v~q~~~l~~~~tv~e  438 (566)
                      -|++|++++|+||||||||||++.|++  +.+|     ..|.++++++.....  .....+.+++.+|+           
T Consensus        20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-----------   88 (243)
T 1n0w_A           20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-----------   88 (243)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-----------
T ss_pred             CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-----------
Confidence            479999999999999999999999999  5665     466777776542110  11111222322211           


Q ss_pred             HHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHH-HHHHHHH--cCCCCEEEEeCCCCCCCHH----
Q psy7366         439 HLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRK-LSTAIAL--LGNPPLIFLDEPTSGMDPG----  511 (566)
Q Consensus       439 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqr-v~la~al--~~~p~lllLDEPt~gLD~~----  511 (566)
                                            +++.+.       ....++..+... +.-+..+  ..+|+++++|||++.+|+.    
T Consensus        89 ----------------------~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~  139 (243)
T 1n0w_A           89 ----------------------VLDNVA-------YARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGR  139 (243)
T ss_dssp             ----------------------HHHTEE-------EEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC------
T ss_pred             ----------------------HhhCeE-------EEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCC
Confidence                                  111110       011223333222 1112222  2689999999999999985    


Q ss_pred             ---H-----HHHHHHHHHHHHhC-CcEEEEEccCHHHHHh-------------------hCCEEEEEECC
Q psy7366         512 ---A-----RRFLWTCIERAVSE-GRCVILTSHNMEECEA-------------------LCTKLTIMVNG  553 (566)
Q Consensus       512 ---~-----~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~-------------------~~drv~~l~~G  553 (566)
                         .     ...++..|.+++++ |.|||+++|.......                   +||++++|+.|
T Consensus       140 ~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~  209 (243)
T 1n0w_A          140 GELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG  209 (243)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence               3     34455556666554 9999999997765543                   79999999865

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=99.60  E-value=2.2e-18  Score=162.82  Aligned_cols=152  Identities=13%  Similarity=0.029  Sum_probs=97.9

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhc
Q psy7366         368 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVR  447 (566)
Q Consensus       368 ~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~  447 (566)
                      .+++|++++|+||||||||||+++|+|.  ++.|.|.++|.++.... ..+..++|++|+..  +..++.+|+.+.....
T Consensus         5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~-~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~~   79 (191)
T 1zp6_A            5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYI-KHGRIDPWLPQSHQ--QNRMIMQIAADVAGRY   79 (191)
T ss_dssp             -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTC-CSSCCCTTSSSHHH--HHHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhh-hcccccCCccchhh--hhHHHHHHHHHHHHHH
Confidence            4789999999999999999999999998  77899999987642110 01234577777543  3467888876543211


Q ss_pred             CCCchHHHHHHHHHHHHcCCCCcc--ccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy7366         448 NVPSVLLNTIVNESLNKFALGHYS--DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS  525 (566)
Q Consensus       448 ~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~  525 (566)
                      ......  ..++.++..+++....  +.++..+|+|++|++.++|++..+|+++        +|+...+.+++.+..+..
T Consensus        80 ~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l~~  149 (191)
T 1zp6_A           80 AKEGYF--VILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADLGA  149 (191)
T ss_dssp             HHTSCE--EEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCCGG
T ss_pred             hccCCe--EEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhccCc
Confidence            000000  0000011111221111  4467789999999999999999999876        688888888887766543


Q ss_pred             CCcEEEEEc
Q psy7366         526 EGRCVILTS  534 (566)
Q Consensus       526 ~g~tvl~vs  534 (566)
                      .+..+|.++
T Consensus       150 ~~~~~i~t~  158 (191)
T 1zp6_A          150 FEHHVLPVS  158 (191)
T ss_dssp             GGGGEEECT
T ss_pred             ccccEEECC
Confidence            333344444

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=99.60  E-value=7.7e-16  Score=159.66  Aligned_cols=86  Identities=20%  Similarity=0.286  Sum_probs=78.3

Q ss_pred             ccccc-cCChhHHHHHHHHHHHh---------CCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHH
Q psy7366          85 DREVR-TLSGGNKRKLSTAIALL---------GNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECE  154 (566)
Q Consensus        85 ~~~~~-~LSgG~kqrl~iA~al~---------~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~  154 (566)
                      ++++. .||||||||++||++|+         .+|+||||||||++||+..+..|.+.|.++.   .|+|++||. ++  
T Consensus       259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~~--  332 (359)
T 2o5v_A          259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-AP--  332 (359)
T ss_dssp             TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-CT--
T ss_pred             CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-cc--
Confidence            56787 89999999999999999         8999999999999999999999999998763   699999994 44  


Q ss_pred             hhcCEEEEEeCCEEEEecChhHH
Q psy7366         155 ALCTKLTIMVNGQFTCLGSATHL  177 (566)
Q Consensus       155 ~~~d~i~vl~~G~i~~~g~~~~~  177 (566)
                       .||++++|++|+++..|+++++
T Consensus       333 -~~~~i~~l~~G~i~~~g~~~~~  354 (359)
T 2o5v_A          333 -GAALTLRAQAGRFTPVADEEMQ  354 (359)
T ss_dssp             -TCSEEEEEETTEEEECCCTTTS
T ss_pred             -cCCEEEEEECCEEEecCCHHHH
Confidence             8999999999999999988764

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=99.59  E-value=1.1e-16  Score=167.31  Aligned_cols=129  Identities=19%  Similarity=0.203  Sum_probs=97.8

Q ss_pred             eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCC-ccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHH
Q psy7366         361 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT-SGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREH  439 (566)
Q Consensus       361 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~-~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~  439 (566)
                      +|++++  +++|++++|+||||||||||+++|+|+++|+ +|+|.+.+.++..   ..+..++|++|..           
T Consensus       127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~---~~~~~~~~v~Q~~-----------  190 (372)
T 2ewv_A          127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEY---VFKHKKSIVNQRE-----------  190 (372)
T ss_dssp             SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCS---CCCCSSSEEEEEE-----------
T ss_pred             HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhh---hhccCceEEEeee-----------
Confidence            566665  7899999999999999999999999999997 8999887766532   2355688888841           


Q ss_pred             HHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy7366         440 LEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTC  519 (566)
Q Consensus       440 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~  519 (566)
                                               +++.      +..|      +.+|+++|..+|++|++|||+   |+....   ..
T Consensus       191 -------------------------~g~~------~~~~------~~~l~~~L~~~pd~illdE~~---d~e~~~---~~  227 (372)
T 2ewv_A          191 -------------------------VGED------TKSF------ADALRAALREDPDVIFVGEMR---DLETVE---TA  227 (372)
T ss_dssp             -------------------------BTTT------BSCS------HHHHHHHTTSCCSEEEESCCC---SHHHHH---HH
T ss_pred             -------------------------cCCC------HHHH------HHHHHHHhhhCcCEEEECCCC---CHHHHH---HH
Confidence                                     1211      1233      468999999999999999999   776543   33


Q ss_pred             HHHHHhCCcEEEEEccCHHHHHhhCCEEEEE
Q psy7366         520 IERAVSEGRCVILTSHNMEECEALCTKLTIM  550 (566)
Q Consensus       520 l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l  550 (566)
                      ++. +..|.+|+.++|+.+ +...|||++.|
T Consensus       228 l~~-~~~g~~vi~t~H~~~-~~~~~~rl~~l  256 (372)
T 2ewv_A          228 LRA-AETGHLVFGTLHTNT-AIDTIHRIVDI  256 (372)
T ss_dssp             HHH-HTTTCEEEECCCCCS-HHHHHHHHHHT
T ss_pred             HHH-HhcCCEEEEEECcch-HHHHHHHHHHh
Confidence            443 345899999999955 66777876544

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=99.58  E-value=5.2e-16  Score=159.15  Aligned_cols=166  Identities=10%  Similarity=-0.007  Sum_probs=116.9

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCch--H-----HhcCceEEEecCCCCCCCCCHHHHH
Q psy7366         368 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM--D-----LVRSYIGYCPQFDALNDRLTPREHL  440 (566)
Q Consensus       368 ~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~--~-----~~~~~i~~v~q~~~l~~~~tv~e~l  440 (566)
                      ..++|++++|+||||||||||+++|+|+++|++|+|.+.|.++....  .     ..+..+.|++|...+++.+++++|+
T Consensus       125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l  204 (328)
T 3e70_C          125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI  204 (328)
T ss_dssp             SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence            34789999999999999999999999999999999999999885421  1     1234567999999898989999999


Q ss_pred             HHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHH
Q psy7366         441 EFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCI  520 (566)
Q Consensus       441 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l  520 (566)
                      .+..... ...        -+++..|..+.....+.+||       .+++++..++.+++||.++. .      .+.+.+
T Consensus       205 ~~~~~~~-~d~--------vliDtaG~~~~~~~l~~eL~-------~i~ral~~de~llvLDa~t~-~------~~~~~~  261 (328)
T 3e70_C          205 QHAKARG-IDV--------VLIDTAGRSETNRNLMDEMK-------KIARVTKPNLVIFVGDALAG-N------AIVEQA  261 (328)
T ss_dssp             HHHHHHT-CSE--------EEEEECCSCCTTTCHHHHHH-------HHHHHHCCSEEEEEEEGGGT-T------HHHHHH
T ss_pred             HHHHhcc-chh--------hHHhhccchhHHHHHHHHHH-------HHHHHhcCCCCEEEEecHHH-H------HHHHHH
Confidence            7653211 000        01223344333334444554       38899998888889995554 3      444555


Q ss_pred             HHHHh-CCcEEEEEccCH---------HHHHhhCCEEEEEECCEEE
Q psy7366         521 ERAVS-EGRCVILTSHNM---------EECEALCTKLTIMVNGQFT  556 (566)
Q Consensus       521 ~~~~~-~g~tvl~vsHd~---------~~~~~~~drv~~l~~G~i~  556 (566)
                      +.+.+ .+.|+|++||.-         ..+....-.|.++..|+-+
T Consensus       262 ~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v  307 (328)
T 3e70_C          262 RQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY  307 (328)
T ss_dssp             HHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred             HHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence            66654 489999999953         2334455678888888643

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=99.58  E-value=5.6e-19  Score=181.20  Aligned_cols=160  Identities=14%  Similarity=0.047  Sum_probs=106.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHCCC--------CCCccEEEEcCccCCCc----------------hHHhcCceEEE---e
Q psy7366         373 ECFGLLGLNGAGKTTTFKMLTGAI--------KPTSGNAYVMNHSIRDS----------------MDLVRSYIGYC---P  425 (566)
Q Consensus       373 e~~~l~G~NGsGKSTLl~~i~G~~--------~~~~G~i~~~g~~~~~~----------------~~~~~~~i~~v---~  425 (566)
                      ++++|+|+||||||||+|+|.|+.        .|+.|+|.++|.++...                ...++..++++   +
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~   84 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL   84 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred             cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence            589999999999999999999997        78999999999877432                12234457777   6


Q ss_pred             cCCCCCCCCCHHHHHHHHH--H----hcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEE
Q psy7366         426 QFDALNDRLTPREHLEFYS--R----VRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLI  499 (566)
Q Consensus       426 q~~~l~~~~tv~e~l~~~~--~----~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~ll  499 (566)
                      |++.++++.++.||..++.  .    +...+.......+..++..+++.+..++.. +||+||+||+..+++++.+|+++
T Consensus        85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~-~ls~g~~Q~~~ad~ill~k~dl~  163 (318)
T 1nij_A           85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN-QFTIAQSQVGYADRILLTKTDVA  163 (318)
T ss_dssp             HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH-HCHHHHHHHHTCSEEEEECTTTC
T ss_pred             hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh-hchHHHHHHHhCCEEEEECcccC
Confidence            7766556667777654320  0    000000000000111223334444433333 79999999998888888888887


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCC
Q psy7366         500 FLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCT  545 (566)
Q Consensus       500 lLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~d  545 (566)
                        |||         ..+.+.|+++. .+.+|+++||+...+..+.|
T Consensus       164 --de~---------~~l~~~l~~l~-~~~~ii~~sh~~~~~~~l~~  197 (318)
T 1nij_A          164 --GEA---------EKLHERLARIN-ARAPVYTVTHGDIDLGLLFN  197 (318)
T ss_dssp             --SCT---------HHHHHHHHHHC-SSSCEEECCSSCCCGGGGSC
T ss_pred             --CHH---------HHHHHHHHHhC-CCCeEEEecccCCCHHHHhC
Confidence              888         67778887764 58999999997555554443

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=99.57  E-value=2e-16  Score=168.53  Aligned_cols=158  Identities=13%  Similarity=0.115  Sum_probs=108.8

Q ss_pred             eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCch-----HH--hcCceEEEecCCCCCCCC
Q psy7366         362 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM-----DL--VRSYIGYCPQFDALNDRL  434 (566)
Q Consensus       362 l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~-----~~--~~~~i~~v~q~~~l~~~~  434 (566)
                      -+++||++.+|++++|+|+||||||||+++|+|++++++|+|.+.|.+.....     ..  .+.+++|++|+..+++.+
T Consensus       283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~  362 (503)
T 2yhs_A          283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS  362 (503)
T ss_dssp             BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred             CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence            46889999999999999999999999999999999999999999887765421     11  356799999998888888


Q ss_pred             CHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHc-CCC-CEEEEeCCCCCCCHHH
Q psy7366         435 TPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALL-GNP-PLIFLDEPTSGMDPGA  512 (566)
Q Consensus       435 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~-~~p-~lllLDEPt~gLD~~~  512 (566)
                      ++++|+.+... .+..-        -+++..|..+.......+|    +|++.+++++. ..| .+||...|++|.|...
T Consensus       363 tV~e~l~~a~~-~~~Dv--------VLIDTaGrl~~~~~lm~EL----~kiv~iar~l~~~~P~evLLvLDattGq~al~  429 (503)
T 2yhs_A          363 VIFDAIQAAKA-RNIDV--------LIADTAGRLQNKSHLMEEL----KKIVRVMKKLDVEAPHEVMLTIDASTGQNAVS  429 (503)
T ss_dssp             HHHHHHHHHHH-TTCSE--------EEECCCCSCCCHHHHHHHH----HHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHH
T ss_pred             HHHHHHHHHHh-cCCCE--------EEEeCCCccchhhhHHHHH----HHHHHHHHHhccCCCCeeEEEecCcccHHHHH
Confidence            99999987643 11110        0112222221111122233    47788888764 456 4565556888876542


Q ss_pred             HHHHHHHHHHHHh-CCcEEEEEccCHHH
Q psy7366         513 RRFLWTCIERAVS-EGRCVILTSHNMEE  539 (566)
Q Consensus       513 ~~~l~~~l~~~~~-~g~tvl~vsHd~~~  539 (566)
                            .++.+.+ -|.|.|++|| ++.
T Consensus       430 ------~ak~f~~~~~itgvIlTK-LD~  450 (503)
T 2yhs_A          430 ------QAKLFHEAVGLTGITLTK-LDG  450 (503)
T ss_dssp             ------HHHHHHHHTCCSEEEEEC-GGG
T ss_pred             ------HHHHHHhhcCCCEEEEEc-CCC
Confidence                  2344443 3889999999 444

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=99.56  E-value=1.6e-17  Score=152.69  Aligned_cols=87  Identities=23%  Similarity=0.168  Sum_probs=72.1

Q ss_pred             eeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEe
Q psy7366         346 KRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCP  425 (566)
Q Consensus       346 ~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~  425 (566)
                      .++++.|+    .+.+++++||+|++|++++|+||||||||||+|+|+|++ |++|+|.++|.++..... . .+  |++
T Consensus        11 ~~~~~~~g----~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~~-~-~~--~~~   81 (158)
T 1htw_A           11 EFSMLRFG----KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEYN-I-AG--KMI   81 (158)
T ss_dssp             HHHHHHHH----HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEEE-E-TT--EEE
T ss_pred             HHHHHHHH----HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeecc-C-CC--cce
Confidence            34556664    456899999999999999999999999999999999999 999999999988743211 1 12  789


Q ss_pred             cCCCCCCCCCHHHHHHH
Q psy7366         426 QFDALNDRLTPREHLEF  442 (566)
Q Consensus       426 q~~~l~~~~tv~e~l~~  442 (566)
                      |++.+| .+|+.||+.+
T Consensus        82 q~~~l~-~ltv~e~l~~   97 (158)
T 1htw_A           82 YHFDLY-RLADPEELEF   97 (158)
T ss_dssp             EEEECT-TCSCTTHHHH
T ss_pred             eccccc-cCCcHHHHHH
Confidence            998888 8999999865

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=99.55  E-value=5.1e-16  Score=161.79  Aligned_cols=138  Identities=18%  Similarity=0.085  Sum_probs=101.1

Q ss_pred             eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEe-cCCCCCCCCCHHHH
Q psy7366         361 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCP-QFDALNDRLTPREH  439 (566)
Q Consensus       361 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~-q~~~l~~~~tv~e~  439 (566)
                      +++++||.|++|++++|+||||||||||+++|+|+++|++|.|.++|..-. .....+..++|++ |++.+-        
T Consensus       164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~-~~~~~~~~v~~v~~q~~~~~--------  234 (361)
T 2gza_A          164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPEL-FLPDHPNHVHLFYPSEAKEE--------  234 (361)
T ss_dssp             HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCC-CCTTCSSEEEEECC--------------
T ss_pred             HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCcccc-CccccCCEEEEeecCccccc--------
Confidence            349999999999999999999999999999999999999999999985311 1122456789998 654210        


Q ss_pred             HHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy7366         440 LEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTC  519 (566)
Q Consensus       440 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~  519 (566)
                                                            ++++..++..|+.++..+|+.+++|||..       ..+.+.
T Consensus       235 --------------------------------------~~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~~  269 (361)
T 2gza_A          235 --------------------------------------ENAPVTAATLLRSCLRMKPTRILLAELRG-------GEAYDF  269 (361)
T ss_dssp             ------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS-------THHHHH
T ss_pred             --------------------------------------cccccCHHHHHHHHHhcCCCEEEEcCchH-------HHHHHH
Confidence                                                  02233466777788888999999999986       345566


Q ss_pred             HHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECC
Q psy7366         520 IERAVSEGRCVILTSHNMEECEALCTKLTIMVNG  553 (566)
Q Consensus       520 l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G  553 (566)
                      |+.+.....|++.++|..+ +...+||+..|..|
T Consensus       270 l~~l~~g~~~~l~t~H~~~-~~~~~~Rl~~l~~~  302 (361)
T 2gza_A          270 INVAASGHGGSITSCHAGS-CELTFERLALMVLQ  302 (361)
T ss_dssp             HHHHHTTCCSCEEEEECSS-HHHHHHHHHHHHTT
T ss_pred             HHHHhcCCCeEEEEECCCC-HHHHHHHHHHHHhc
Confidence            6666443457899999964 66778888777655

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=99.55  E-value=1.6e-15  Score=156.58  Aligned_cols=122  Identities=12%  Similarity=0.070  Sum_probs=91.1

Q ss_pred             eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCC-CCccEEEEc-CccCCCchHHhcCceEEEecCCCCCCCCCHHH
Q psy7366         361 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-PTSGNAYVM-NHSIRDSMDLVRSYIGYCPQFDALNDRLTPRE  438 (566)
Q Consensus       361 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~-~~~G~i~~~-g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e  438 (566)
                      -++++++. .+|++++|+||||||||||+|+|+|..+ |.+|+|.++ |....   ...+..++|++|+..+++..++.+
T Consensus       205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~---tt~~~~i~~v~q~~~l~dtpgv~e  280 (358)
T 2rcn_A          205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH---TTTAARLYHFPHGGDVIDSPGVRE  280 (358)
T ss_dssp             THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC----------------CCCEEEECTTSCEEEECHHHHT
T ss_pred             CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc---ceEEEEEEEECCCCEecCcccHHH
Confidence            35667764 4899999999999999999999999999 999999987 65432   123457999999988888778877


Q ss_pred             HHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHH
Q psy7366         439 HLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIAL  492 (566)
Q Consensus       439 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al  492 (566)
                      +.     +.+.+.......+.++++.+++.++.+.++.+|| ||+||++||+++
T Consensus       281 ~~-----l~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gl  328 (358)
T 2rcn_A          281 FG-----LWHLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGA  328 (358)
T ss_dssp             CC-----CCCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred             hh-----hcCCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcC
Confidence            41     2234444555667888999999999999999999 999999999864

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.55  E-value=2.4e-18  Score=177.70  Aligned_cols=174  Identities=18%  Similarity=0.182  Sum_probs=119.8

Q ss_pred             EEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCch-----HHh
Q psy7366         343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM-----DLV  417 (566)
Q Consensus       343 l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~-----~~~  417 (566)
                      ++++++++.|+    ...+++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++....     ...
T Consensus        30 ie~~~~~~~~~----~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~  105 (337)
T 2qm8_A           30 AESRRADHRAA----VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGD  105 (337)
T ss_dssp             HTCSSHHHHHH----HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCC
T ss_pred             HeeCCcccccC----hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHH
Confidence            56677777775    456899999999999999999999999999999999999999999999998764311     123


Q ss_pred             cCceEEEecCCCCCCCCC------------HHHHHHHHH-----------------------------HhcCCC-chHHH
Q psy7366         418 RSYIGYCPQFDALNDRLT------------PREHLEFYS-----------------------------RVRNVP-SVLLN  455 (566)
Q Consensus       418 ~~~i~~v~q~~~l~~~~t------------v~e~l~~~~-----------------------------~~~~~~-~~~~~  455 (566)
                      +.+++|++|++.+|...+            +.|.+....                             ...... ....+
T Consensus       106 ~~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~  185 (337)
T 2qm8_A          106 KTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQ  185 (337)
T ss_dssp             GGGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC-----
T ss_pred             hhhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHH
Confidence            567999999987765321            222221100                             000000 00000


Q ss_pred             ---HHHHHHHHHcCCCCcccc-CcCcCChhHHHHHHHHHHHcC------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy7366         456 ---TIVNESLNKFALGHYSDR-EVRTLSGGNKRKLSTAIALLG------NPPLIFLDEPTSGMDPGARRFLWTCIERAVS  525 (566)
Q Consensus       456 ---~~~~~~l~~~~l~~~~~~-~~~~LSgGqkqrv~la~al~~------~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~  525 (566)
                         ..+.+....+.+ ...|. ....+|+|++|++..+++++.      .|+++.    +|++|......+++.|.++..
T Consensus       186 ~i~~~i~~~~~ivvl-NK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          186 GIKKGIFELADMIAV-NKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             -CCTTHHHHCSEEEE-ECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHhccccEEEE-EchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence               001111111222 22342 335689999999999999987      688876    999999999999999988654

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.55  E-value=8.8e-17  Score=160.80  Aligned_cols=137  Identities=11%  Similarity=0.109  Sum_probs=91.3

Q ss_pred             CCcchHHHHHhccccCCCc---cCCCCCcccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQK---VPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNK   77 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~---~~~~~~~~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~   77 (566)
                      .||||++|+++|+..+...   +.+...........+||++|++.+++.+||.|++.|+....+   ...++.+.+++. 
T Consensus        13 aGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~---~~~~~~i~~~~~-   88 (270)
T 3sop_A           13 LGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN---ENCWEPIEKYIN-   88 (270)
T ss_dssp             SSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBC---TTCSHHHHHHHH-
T ss_pred             CCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhccc---HHHHHHHHHHHH-
Confidence            5999999999999987652   222221112234579999999999999999999988653322   122233344433 


Q ss_pred             cCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhH
Q psy7366          78 FALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEE  152 (566)
Q Consensus        78 ~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~  152 (566)
                         ....++.+.+||||||||+++|||++.   +++||||+.+||+..    .++++.+.+. ++||++.|..+.
T Consensus        89 ---~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~~-~~vI~Vi~K~D~  152 (270)
T 3sop_A           89 ---EQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSKV-VNIIPVIAKADT  152 (270)
T ss_dssp             ---HHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHTT-SEEEEEETTGGG
T ss_pred             ---HHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHhc-CcEEEEEecccc
Confidence               234567789999999999999999886   999999999999988    3455666555 888888887543

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=99.54  E-value=5.1e-16  Score=157.69  Aligned_cols=149  Identities=11%  Similarity=0.030  Sum_probs=113.2

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCccc---------ccccceeEEcCCCC-CCCCCCHHHHHHHHHHhcCCChhhH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTID---------KNLSYIGYCPQFDA-LNDRLTPREHLEFYSRVRNVPSVLL   67 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~~---------~~~~~ig~v~Q~~~-l~~~~tv~e~l~~~~~~~~~~~~~~   67 (566)
                      +|||||++.+++++.+..   .+.+.+....         ....+|+|++|++. +++.+|+.|++.++.. .+.+    
T Consensus       111 sGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~~~~~-~~~d----  185 (302)
T 3b9q_A          111 GGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGKE-EGYD----  185 (302)
T ss_dssp             SCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHHHHHH-TTCS----
T ss_pred             CCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHHHHHHH-cCCc----
Confidence            599999999999987543   1222222111         11236999999998 8888999999987542 2211    


Q ss_pred             HHHHHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCC--EEEeeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEE
Q psy7366          68 NTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPP--LIFLDEPTSGMDPGARRFLWTCIERAV-SEGRCVI  144 (566)
Q Consensus        68 ~~~~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~--vLlLDEPt~~LD~~~~~~l~~~l~~l~-~~g~tvi  144 (566)
                          ..+++.+|+.+..++.+.+||   |||++||+||+.+|+  +|+|| ||+|||+..+      ++++. ..|.|+|
T Consensus       186 ----~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~------~~~~~~~~g~t~i  251 (302)
T 3b9q_A          186 ----VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ------AREFNEVVGITGL  251 (302)
T ss_dssp             ----EEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHH------HHHHHHHTCCCEE
T ss_pred             ----chHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHH------HHHHHHhcCCCEE
Confidence                135677888887889999999   999999999999999  99999 9999999865      24454 4599999


Q ss_pred             EecC---------ChhHHHhhcCEEEEEeCCEE
Q psy7366         145 LTSH---------NMEECEALCTKLTIMVNGQF  168 (566)
Q Consensus       145 iisH---------~~~~~~~~~d~i~vl~~G~i  168 (566)
                      ++||         .++.+....+.|.++..|+.
T Consensus       252 iiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~  284 (302)
T 3b9q_A          252 ILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA  284 (302)
T ss_dssp             EEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred             EEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence            9999         56677778889999999974

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=99.51  E-value=4.7e-14  Score=147.64  Aligned_cols=78  Identities=28%  Similarity=0.355  Sum_probs=69.8

Q ss_pred             cccccCChhHHHHH------HHHHHHhCC-CCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHHhhcC
Q psy7366          86 REVRTLSGGNKRKL------STAIALLGN-PPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCT  158 (566)
Q Consensus        86 ~~~~~LSgG~kqrl------~iA~al~~~-p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~~~d  158 (566)
                      +++..|||||+||+      ++|++|+.+ |++|||||||++||+..+..+.+.|+++. .+.+||++||+.+ +..+||
T Consensus       276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~th~~~-~~~~~d  353 (371)
T 3auy_A          276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-SIPQMIIITHHRE-LEDVAD  353 (371)
T ss_dssp             ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-SCSEEEEEESCGG-GGGGCS
T ss_pred             cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-cCCeEEEEEChHH-HHhhCC
Confidence            56789999999988      567899999 99999999999999999999999999863 4568999999986 678999


Q ss_pred             EEEEEeC
Q psy7366         159 KLTIMVN  165 (566)
Q Consensus       159 ~i~vl~~  165 (566)
                      ++++|++
T Consensus       354 ~~~~l~k  360 (371)
T 3auy_A          354 VIINVKK  360 (371)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence            9999983

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.50  E-value=6.3e-16  Score=157.22  Aligned_cols=121  Identities=11%  Similarity=0.063  Sum_probs=88.9

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEE---cCccCCCchHHhc-CceEEEecCCCCC-----CCCCHHH
Q psy7366         368 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV---MNHSIRDSMDLVR-SYIGYCPQFDALN-----DRLTPRE  438 (566)
Q Consensus       368 ~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~---~g~~~~~~~~~~~-~~i~~v~q~~~l~-----~~~tv~e  438 (566)
                      ++.+|++++|+||||||||||+|+|+ +.+|++|+|.+   +|++++......+ ..+||++|.|.+.     +.+|+ |
T Consensus       161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e  238 (302)
T 2yv5_A          161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-R  238 (302)
T ss_dssp             HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-G
T ss_pred             hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-H
Confidence            45679999999999999999999999 99999999999   8988765322222 3689999998653     67899 8


Q ss_pred             HH--HHH------HHhcC-CCchHHHHHHHHHHHHcCCCC-ccccCcCcCChhHHHHHHHHH
Q psy7366         439 HL--EFY------SRVRN-VPSVLLNTIVNESLNKFALGH-YSDREVRTLSGGNKRKLSTAI  490 (566)
Q Consensus       439 ~l--~~~------~~~~~-~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqrv~la~  490 (566)
                      |+  .|.      ..+.+ ....+....+.++++.++|.+ ..++++..|||.+++++.|||
T Consensus       239 ~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~  300 (302)
T 2yv5_A          239 EVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR  300 (302)
T ss_dssp             GGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred             HHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence            87  333      12222 122233456889999999985 788999999999999999886

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=99.48  E-value=8.1e-14  Score=148.74  Aligned_cols=79  Identities=20%  Similarity=0.189  Sum_probs=71.0

Q ss_pred             ccccccCChhHHHHHHHHHHHh----CCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHHhhcCEE
Q psy7366          85 DREVRTLSGGNKRKLSTAIALL----GNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKL  160 (566)
Q Consensus        85 ~~~~~~LSgG~kqrl~iA~al~----~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~~~d~i  160 (566)
                      .+++..|||||||+++||++|+    .+|++|||||||++||+..+..+.++|+++.+.|.++|++||+... ...||++
T Consensus       328 ~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~-~~~~d~~  406 (430)
T 1w1w_A          328 FKDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTM-FEKSDAL  406 (430)
T ss_dssp             CCCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHH-HTTCSEE
T ss_pred             ccccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHH-HHhCCEE
Confidence            3456779999999999999999    6899999999999999999999999999986568899999999654 5679999


Q ss_pred             EEEe
Q psy7366         161 TIMV  164 (566)
Q Consensus       161 ~vl~  164 (566)
                      ++|.
T Consensus       407 ~~~~  410 (430)
T 1w1w_A          407 VGVY  410 (430)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9986

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=99.48  E-value=4.2e-15  Score=153.91  Aligned_cols=149  Identities=11%  Similarity=0.030  Sum_probs=114.6

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCccc---------ccccceeEEcCCCC-CCCCCCHHHHHHHHHHhcCCChhhH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTID---------KNLSYIGYCPQFDA-LNDRLTPREHLEFYSRVRNVPSVLL   67 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~~---------~~~~~ig~v~Q~~~-l~~~~tv~e~l~~~~~~~~~~~~~~   67 (566)
                      +|||||++.+.+++.+..   .+.+.+....         ....+|+|++|++. +++.+|+.|++.++.. .+.+    
T Consensus       168 sGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~~~~~-~~~d----  242 (359)
T 2og2_A          168 GGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGKE-EGYD----  242 (359)
T ss_dssp             SCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHHHHHH-TTCS----
T ss_pred             ChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHHHHHh-CCCH----
Confidence            599999999999987533   1222222110         11246999999998 8888999999987642 2221    


Q ss_pred             HHHHHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCC--EEEeeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEE
Q psy7366          68 NTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPP--LIFLDEPTSGMDPGARRFLWTCIERAV-SEGRCVI  144 (566)
Q Consensus        68 ~~~~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~--vLlLDEPt~~LD~~~~~~l~~~l~~l~-~~g~tvi  144 (566)
                          ..+++.+|+.+..++.+.+||   |||++||+||+.+|+  +|+|| ||+|||+..+.      +++. ..|.|+|
T Consensus       243 ----~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~------~~~~~~~g~t~i  308 (359)
T 2og2_A          243 ----VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGL  308 (359)
T ss_dssp             ----EEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEE
T ss_pred             ----HHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH------HHHHHhcCCeEE
Confidence                135677888887889999999   999999999999999  99999 99999998653      3444 3599999


Q ss_pred             EecC---------ChhHHHhhcCEEEEEeCCEE
Q psy7366         145 LTSH---------NMEECEALCTKLTIMVNGQF  168 (566)
Q Consensus       145 iisH---------~~~~~~~~~d~i~vl~~G~i  168 (566)
                      ++||         .++.+....+.|.++..|+.
T Consensus       309 iiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~  341 (359)
T 2og2_A          309 ILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA  341 (359)
T ss_dssp             EEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred             EEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence            9999         46677778889999998873

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=99.48  E-value=1.3e-13  Score=144.33  Aligned_cols=80  Identities=29%  Similarity=0.382  Sum_probs=70.2

Q ss_pred             cCcCcCChhHHHHH------HHHHHHcCC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCC
Q psy7366         473 REVRTLSGGNKRKL------STAIALLGN-PPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCT  545 (566)
Q Consensus       473 ~~~~~LSgGqkqrv------~la~al~~~-p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~d  545 (566)
                      +++..|||||+||+      ++|++++.+ |++|||||||+|||+..+..+.+.|.++. .+.+||++||+.+ +..+||
T Consensus       276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~th~~~-~~~~~d  353 (371)
T 3auy_A          276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-SIPQMIIITHHRE-LEDVAD  353 (371)
T ss_dssp             ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-SCSEEEEEESCGG-GGGGCS
T ss_pred             cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-cCCeEEEEEChHH-HHhhCC
Confidence            56789999999988      557889999 99999999999999999999999998864 3468999999986 678999


Q ss_pred             EEEEEE-CCE
Q psy7366         546 KLTIMV-NGQ  554 (566)
Q Consensus       546 rv~~l~-~G~  554 (566)
                      ++++|+ +|.
T Consensus       354 ~~~~l~k~~~  363 (371)
T 3auy_A          354 VIINVKKDGN  363 (371)
T ss_dssp             EEEEEEESSS
T ss_pred             EEEEEEecCC
Confidence            999996 443

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=99.48  E-value=6.1e-15  Score=138.03  Aligned_cols=113  Identities=17%  Similarity=0.182  Sum_probs=78.2

Q ss_pred             eEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHHHHH
Q psy7366         366 SFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSR  445 (566)
Q Consensus       366 sl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~  445 (566)
                      +|.+.+|+.++|+||||+|||||+++|++.+.|.+|..                 +.|          ++..+.+.... 
T Consensus        32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-----------------~~~----------~~~~~~~~~~~-   83 (180)
T 3ec2_A           32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-----------------GYF----------FDTKDLIFRLK-   83 (180)
T ss_dssp             SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-----------------CCE----------EEHHHHHHHHH-
T ss_pred             hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-----------------EEE----------EEHHHHHHHHH-
Confidence            45567899999999999999999999999887655521                 112          13333322111 


Q ss_pred             hcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHH
Q psy7366         446 VRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTS-GMDPGARRFLWTCIERAV  524 (566)
Q Consensus       446 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~-gLD~~~~~~l~~~l~~~~  524 (566)
                                    .........                   -....+.+|++|+||||++ ++|+..+..+.+++.+..
T Consensus        84 --------------~~~~~~~~~-------------------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~  130 (180)
T 3ec2_A           84 --------------HLMDEGKDT-------------------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRY  130 (180)
T ss_dssp             --------------HHHHHTCCS-------------------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHH
T ss_pred             --------------HHhcCchHH-------------------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHH
Confidence                          001100000                   0112233899999999985 999999999999999887


Q ss_pred             hCCcEEEEEccCHHH
Q psy7366         525 SEGRCVILTSHNMEE  539 (566)
Q Consensus       525 ~~g~tvl~vsHd~~~  539 (566)
                      ++|+++|++||...+
T Consensus       131 ~~~~~ii~tsn~~~~  145 (180)
T 3ec2_A          131 NNLKSTIITTNYSLQ  145 (180)
T ss_dssp             HTTCEEEEECCCCSC
T ss_pred             HcCCCEEEEcCCChh
Confidence            789999999998643

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=99.48  E-value=4.9e-17  Score=164.56  Aligned_cols=127  Identities=13%  Similarity=0.108  Sum_probs=96.7

Q ss_pred             CCcchHHHHHhccccCCCccCCCCCcccccccceeEEcCCCCCCCCCCHHH-HHHHHHHhcCCChhhHHHHHHHHHHHcC
Q psy7366           1 MGLTTTPKRVVTLLLTTQKVPGSNPTIDKNLSYIGYCPQFDALNDRLTPRE-HLEFYSRVRNVPSVLLNTIVNESLNKFA   79 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~~tv~e-~l~~~~~~~~~~~~~~~~~~~~~l~~~g   79 (566)
                      .||||++|++++++ .|+.              +++++|++.++.. |+++ |+.+...   ..     ..+.+.++.+ 
T Consensus       137 sGKSTLl~lL~gl~-~G~I--------------~~~v~q~~~lf~~-ti~~~ni~~~~~---~~-----~~~~~~i~~~-  191 (305)
T 2v9p_A          137 TGKSMLCNSLIHFL-GGSV--------------LSFANHKSHFWLA-SLADTRAALVDD---AT-----HACWRYFDTY-  191 (305)
T ss_dssp             SSHHHHHHHHHHHH-TCEE--------------ECGGGTTSGGGGG-GGTTCSCEEEEE---EC-----HHHHHHHHHT-
T ss_pred             CcHHHHHHHHhhhc-CceE--------------EEEecCccccccc-cHHHHhhccCcc---cc-----HHHHHHHHHH-
Confidence            59999999999998 3322              5678999888764 7776 7765321   11     1345556654 


Q ss_pred             CCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHHhhcCE
Q psy7366          80 LGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTK  159 (566)
Q Consensus        80 l~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~~~d~  159 (566)
                      |+..++  ...||||||||   ||||+.+|+|||    |++||+.+++.+..              +||+++.+ ..||+
T Consensus       192 L~~gld--g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~--------------ltH~~~~~-~~aD~  247 (305)
T 2v9p_A          192 LRNALD--GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY--------------LHSRVQTF-RFEQP  247 (305)
T ss_dssp             TTGGGG--TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG--------------GTTTEEEE-ECCCC
T ss_pred             hHccCC--ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH--------------HhCCHHHH-HhCCE
Confidence            444344  78999999999   999999999999    99999999988852              29998875 57999


Q ss_pred             EEEEeCCEEEEecChhHH
Q psy7366         160 LTIMVNGQFTCLGSATHL  177 (566)
Q Consensus       160 i~vl~~G~i~~~g~~~~~  177 (566)
                      | +|++|+++..|+++++
T Consensus       248 i-vl~~G~iv~~g~~~el  264 (305)
T 2v9p_A          248 C-TDESGEQPFNITDADW  264 (305)
T ss_dssp             C-CCC---CCCCCCHHHH
T ss_pred             E-EEeCCEEEEeCCHHHH
Confidence            9 9999999999999987

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=99.46  E-value=8.9e-17  Score=169.99  Aligned_cols=148  Identities=11%  Similarity=0.035  Sum_probs=105.0

Q ss_pred             EEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc-----hHHh
Q psy7366         343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS-----MDLV  417 (566)
Q Consensus       343 l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-----~~~~  417 (566)
                      +.++++.+.|+    ...+|+++ +. .+|++++|+|||||||||||++|+|+++|++|+|.+.+.++...     ....
T Consensus       144 ~~l~~Lg~~~~----~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v  217 (418)
T 1p9r_A          144 LDLHSLGMTAH----NHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQV  217 (418)
T ss_dssp             CCGGGSCCCHH----HHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEEC
T ss_pred             CCHHHcCCCHH----HHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEE
Confidence            45666766554    35578888 54 89999999999999999999999999999999999999887421     1122


Q ss_pred             cCceEEEe---------cCCCC--CCC----CCHHHHHHHHHHhc----CCCchHHHHHHHHHHHHcCCCCccccCcCcC
Q psy7366         418 RSYIGYCP---------QFDAL--NDR----LTPREHLEFYSRVR----NVPSVLLNTIVNESLNKFALGHYSDREVRTL  478 (566)
Q Consensus       418 ~~~i~~v~---------q~~~l--~~~----~tv~e~l~~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L  478 (566)
                      +..+++.+         |+|.+  +..    .|+.+++.+....+    ......... +...+..+++.+.  ..+.+|
T Consensus       218 ~~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~-~i~rL~~lgl~~~--~~~~~L  294 (418)
T 1p9r_A          218 NPRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVG-AVTRLRDMGIEPF--LISSSL  294 (418)
T ss_dssp             BGGGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHH-HHHHHHHHTCCHH--HHHHHE
T ss_pred             ccccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHH-HHHHHHHcCCcHH--HHHHHH
Confidence            34455655         88764  333    58888887653211    011111122 2335677888764  378899


Q ss_pred             ChhHHHHHHHHHHHcCCCCEEEE
Q psy7366         479 SGGNKRKLSTAIALLGNPPLIFL  501 (566)
Q Consensus       479 SgGqkqrv~la~al~~~p~lllL  501 (566)
                      ||||+||  |||+|+.+|++..-
T Consensus       295 Sgg~~QR--LaraL~~~p~~~~~  315 (418)
T 1p9r_A          295 LGVLAQR--LVRTLCPDCKEPYE  315 (418)
T ss_dssp             EEEEEEE--EEEEECTTTCEEEE
T ss_pred             HHHHHHH--hhhhhcCCCCccCC
Confidence            9999999  99999999998763

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=99.45  E-value=2e-16  Score=171.65  Aligned_cols=172  Identities=13%  Similarity=0.169  Sum_probs=114.7

Q ss_pred             cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCcc-CCCchHHhcCceEEEecCCC--------
Q psy7366         359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS-IRDSMDLVRSYIGYCPQFDA--------  429 (566)
Q Consensus       359 ~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~-~~~~~~~~~~~i~~v~q~~~--------  429 (566)
                      ..+++++++.+++|++++|+||||||||||+++|+|+++|++|.|++.|.. +...   ....+++..|...        
T Consensus       247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~---~~~~v~~~~r~~~~~~~~~~~  323 (511)
T 2oap_1          247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLY---HENWIAEVTRTGMGEGEIDMY  323 (511)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCC---CSSEEEEECBCCSSSCCBCHH
T ss_pred             HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCC---CCCeEEEEeecccccCCcCHH
Confidence            347889999999999999999999999999999999999999999999865 2211   0123444443221        


Q ss_pred             --------------CCCCCCHHHHHHHHHHhc-CCCc---hHHHHHHHHHHHHcCC-----CC----ccc---cCcCcCC
Q psy7366         430 --------------LNDRLTPREHLEFYSRVR-NVPS---VLLNTIVNESLNKFAL-----GH----YSD---REVRTLS  479 (566)
Q Consensus       430 --------------l~~~~tv~e~l~~~~~~~-~~~~---~~~~~~~~~~l~~~~l-----~~----~~~---~~~~~LS  479 (566)
                                    ++..++..|++.+..... +...   -. ...+.++++++..     ..    ..+   .....+|
T Consensus       324 ~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~H-a~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s  402 (511)
T 2oap_1          324 DLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLH-AGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVR  402 (511)
T ss_dssp             HHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEE-CSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEES
T ss_pred             HHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccc-cCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEe
Confidence                          223556666554433221 2100   00 0112334444332     21    112   2345689


Q ss_pred             hhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEE--EccCHHHHHhhCCE
Q psy7366         480 GGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL--TSHNMEECEALCTK  546 (566)
Q Consensus       480 gGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~--vsHd~~~~~~~~dr  546 (566)
                      +||+||++++.          + | |+|||+.....+++.|.++..+|.|+++  +||+++++...|+.
T Consensus       403 ~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g~  459 (511)
T 2oap_1          403 GNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLGV  459 (511)
T ss_dssp             SSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHTS
T ss_pred             CCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcCC
Confidence            99999877641          2 7 9999999888887777777666889885  99999999988863

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=99.45  E-value=2.7e-14  Score=150.15  Aligned_cols=146  Identities=16%  Similarity=0.177  Sum_probs=91.0

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHH--HHHCCCCCCcc-----EEEEcCccCCCc--hHHhcCceEEEecCCCCCCCCCHHH
Q psy7366         368 GVGRGECFGLLGLNGAGKTTTFK--MLTGAIKPTSG-----NAYVMNHSIRDS--MDLVRSYIGYCPQFDALNDRLTPRE  438 (566)
Q Consensus       368 ~i~~Ge~~~l~G~NGsGKSTLl~--~i~G~~~~~~G-----~i~~~g~~~~~~--~~~~~~~i~~v~q~~~l~~~~tv~e  438 (566)
                      -|++|++++|+||||||||||++  ++.++.+++.|     .++++++.....  ...+.+++++.+|        ++.+
T Consensus       174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~--------~vle  245 (400)
T 3lda_A          174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD--------DALN  245 (400)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH--------HHHH
T ss_pred             CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH--------hHhh
Confidence            58999999999999999999999  45688777555     677777653211  1111222333222        2222


Q ss_pred             HHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHH--HHHH--cCCCCEEEEeCCCCCCCHHHH-
Q psy7366         439 HLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLST--AIAL--LGNPPLIFLDEPTSGMDPGAR-  513 (566)
Q Consensus       439 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~l--a~al--~~~p~lllLDEPt~gLD~~~~-  513 (566)
                      |+.+                                 .....++.++-.+  +..+  ..+|+++++|||++.+|+... 
T Consensus       246 ni~~---------------------------------~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg  292 (400)
T 3lda_A          246 NVAY---------------------------------ARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSG  292 (400)
T ss_dssp             TEEE---------------------------------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC-----
T ss_pred             cEEE---------------------------------eccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcC
Confidence            2211                                 1111122222122  2222  357999999999999997533 


Q ss_pred             -----------HHHHHHHHHHHhC-CcEEEEEccCH-------------------HHHHhhCCEEEEEECCE
Q psy7366         514 -----------RFLWTCIERAVSE-GRCVILTSHNM-------------------EECEALCTKLTIMVNGQ  554 (566)
Q Consensus       514 -----------~~l~~~l~~~~~~-g~tvl~vsHd~-------------------~~~~~~~drv~~l~~G~  554 (566)
                                 ..+++.|++++++ |.|||+++|..                   ..+..+||.+++|++++
T Consensus       293 ~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~  364 (400)
T 3lda_A          293 RGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK  364 (400)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence                       5677788888765 99999999982                   23477899999998763

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=99.45  E-value=4.1e-16  Score=145.07  Aligned_cols=138  Identities=12%  Similarity=0.032  Sum_probs=85.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHCCCCCC---ccEEEEcCccCCCc----hHHhc-CceE----EEecCCCCCCCCCHHHHH
Q psy7366         373 ECFGLLGLNGAGKTTTFKMLTGAIKPT---SGNAYVMNHSIRDS----MDLVR-SYIG----YCPQFDALNDRLTPREHL  440 (566)
Q Consensus       373 e~~~l~G~NGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~----~~~~~-~~i~----~v~q~~~l~~~~tv~e~l  440 (566)
                      ++++|+|+||||||||+++|+|+++|+   .|.|.++|.++...    ...+| +.+|    +++|++.+|-    .+  
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i----~~--   76 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFI----RR--   76 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEE----EE--
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEE----ec--
Confidence            589999999999999999999999998   89999999885431    22334 3466    8888765441    00  


Q ss_pred             HHHHHhcCCCchHHHHHHHHHHHH-c-CCCCccccCcCcCChhHHHHHHHHHHHcCCCCEE-------EEeCCCC---CC
Q psy7366         441 EFYSRVRNVPSVLLNTIVNESLNK-F-ALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLI-------FLDEPTS---GM  508 (566)
Q Consensus       441 ~~~~~~~~~~~~~~~~~~~~~l~~-~-~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~ll-------lLDEPt~---gL  508 (566)
                               ...+....+.+++.. + +++..   -...|||||+||++||||++.+|++.       .=|.|..   -+
T Consensus        77 ---------~~~~~~a~l~~~i~~~l~g~dt~---i~EglSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f  144 (171)
T 2f1r_A           77 ---------VSEEEGNDLDWIYERYLSDYDLV---ITEGFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWF  144 (171)
T ss_dssp             ---------CCHHHHTCHHHHHHHHTTTCSEE---EEESCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEE
T ss_pred             ---------CChhhhhCHHHHHHhhCCCCCEE---EECCcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCccc
Confidence                     000001123445544 3 33221   12349999999999999999999873       2355432   23


Q ss_pred             CHHHHHHHHHHHHHHHhCCc
Q psy7366         509 DPGARRFLWTCIERAVSEGR  528 (566)
Q Consensus       509 D~~~~~~l~~~l~~~~~~g~  528 (566)
                      |....+.+.+.|.+...+|.
T Consensus       145 ~~~~~~~~a~~i~~~~~~~~  164 (171)
T 2f1r_A          145 RRDEVERIAEFILSLLREGG  164 (171)
T ss_dssp             CTTCHHHHHHHHHHHHTC--
T ss_pred             CcccHHHHHHHHHHHHhccC
Confidence            44556777777777666654

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=99.44  E-value=1.3e-14  Score=168.84  Aligned_cols=133  Identities=14%  Similarity=0.161  Sum_probs=97.5

Q ss_pred             CCcchHHHHHhccccCCCccCCCCCccccccccee-EEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHHHcC
Q psy7366           1 MGLTTTPKRVVTLLLTTQKVPGSNPTIDKNLSYIG-YCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFA   79 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~~~~~~~~~~~~~~~ig-~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g   79 (566)
                      .||||++|++ |++..           .   .++| ||||++.   .++|.|++.                     ..+|
T Consensus       800 sGKSTlLr~i-Gl~~~-----------~---aqiG~~Vpq~~~---~l~v~d~I~---------------------~rig  840 (1022)
T 2o8b_B          800 GGKSTLMRQA-GLLAV-----------M---AQMGCYVPAEVC---RLTPIDRVF---------------------TRLG  840 (1022)
T ss_dssp             SSHHHHHHHH-HHHHH-----------H---HTTTCCEESSEE---EECCCSBEE---------------------EECC
T ss_pred             CChHHHHHHH-HHHHH-----------H---hheeEEeccCcC---CCCHHHHHH---------------------HHcC
Confidence            4999999999 88742           1   2467 9999863   455555441                     1244


Q ss_pred             CCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHH-HHHHHHHHHHHHhC-CCEEEEecCChhHHHhhc
Q psy7366          80 LGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGA-RRFLWTCIERAVSE-GRCVILTSHNMEECEALC  157 (566)
Q Consensus        80 l~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~-~~~l~~~l~~l~~~-g~tviiisH~~~~~~~~~  157 (566)
                      +.+...+..+++|+++++ +++|++++.+|+++||||||+|+|+.. ...++++|+.+.+. |.++|++||+++.+..+|
T Consensus       841 ~~d~~~~~~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~  919 (1022)
T 2o8b_B          841 ASDRIMSGESTFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYS  919 (1022)
T ss_dssp             ---------CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTS
T ss_pred             CHHHHhhchhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhC
Confidence            444445556788888875 999999999999999999999999987 56689999999876 999999999999999999


Q ss_pred             CEEEEEeCCEEE--EecCh
Q psy7366         158 TKLTIMVNGQFT--CLGSA  174 (566)
Q Consensus       158 d~i~vl~~G~i~--~~g~~  174 (566)
                      |++.++ +|++.  ..|.+
T Consensus       920 d~~~v~-~g~~~~~~~~~~  937 (1022)
T 2o8b_B          920 QNVAVR-LGHMACMVENEC  937 (1022)
T ss_dssp             SCSSEE-EEEEEEC-----
T ss_pred             Ccceee-cCeEEEEEecCc
Confidence            999887 58877  34443

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.44  E-value=7.9e-14  Score=126.70  Aligned_cols=87  Identities=18%  Similarity=0.293  Sum_probs=68.6

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHCCCCCCcc--EEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcC
Q psy7366         371 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSG--NAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRN  448 (566)
Q Consensus       371 ~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G--~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~  448 (566)
                      +|+.++|+||||+|||||+++|++...+ +|  .+++++.++..                    .               
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~--------------------~---------------   78 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPL--------------------T---------------   78 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCC--------------------C---------------
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhH--------------------H---------------
Confidence            8999999999999999999999999876 46  44444332110                    0               


Q ss_pred             CCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCc
Q psy7366         449 VPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGR  528 (566)
Q Consensus       449 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~  528 (566)
                                                                +++.+|++|++|||++ +|...++.++++++.+.++|+
T Consensus        79 ------------------------------------------~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~  115 (149)
T 2kjq_A           79 ------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGK  115 (149)
T ss_dssp             ------------------------------------------GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTC
T ss_pred             ------------------------------------------HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCC
Confidence                                                      1246899999999998 666668999999999887788


Q ss_pred             E-EEEEccC
Q psy7366         529 C-VILTSHN  536 (566)
Q Consensus       529 t-vl~vsHd  536 (566)
                      + +|++||.
T Consensus       116 ~~iiits~~  124 (149)
T 2kjq_A          116 GFLLLGSEY  124 (149)
T ss_dssp             CEEEEEESS
T ss_pred             cEEEEECCC
Confidence            8 8888884

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=99.42  E-value=2.8e-15  Score=152.93  Aligned_cols=144  Identities=10%  Similarity=0.063  Sum_probs=103.8

Q ss_pred             CCcchHHHHHhccccCCCccCCCCCcccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCC
Q psy7366           1 MGLTTTPKRVVTLLLTTQKVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFAL   80 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl   80 (566)
                      .||||++|++.+++.+.   .|.        ..|++|+|++.+++. |+.||+.+.. .++.+.....+++.++++.++ 
T Consensus       101 sGKSTL~~~L~gll~~~---~G~--------~~v~~v~qd~~~~~~-t~~e~~~~~~-~~g~~~~~d~~~~~~~L~~l~-  166 (312)
T 3aez_A          101 VGKSTTARVLQALLARW---DHH--------PRVDLVTTDGFLYPN-AELQRRNLMH-RKGFPESYNRRALMRFVTSVK-  166 (312)
T ss_dssp             SCHHHHHHHHHHHHHTS---TTC--------CCEEEEEGGGGBCCH-HHHHHTTCTT-CTTSGGGBCHHHHHHHHHHHH-
T ss_pred             chHHHHHHHHHhhcccc---CCC--------CeEEEEecCccCCcc-cHHHHHHHHH-hcCCChHHHHHHHHHHHHHhC-
Confidence            59999999999999652   111        359999999988887 9999986532 234444444567788898888 


Q ss_pred             CcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHH-hhcCE
Q psy7366          81 GHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECE-ALCTK  159 (566)
Q Consensus        81 ~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~-~~~d~  159 (566)
                      ....+.++.+|||||+||+++|+|++.+|+|||||||+..+|+.. ..    +.++  .+ .+|+++|+.+... ..++|
T Consensus       167 ~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-~~----l~~~--~D-~~I~V~a~~~~~~~R~i~R  238 (312)
T 3aez_A          167 SGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-LM----VSDL--FD-FSLYVDARIEDIEQWYVSR  238 (312)
T ss_dssp             TTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-CC----GGGG--CS-EEEEEEECHHHHHHHHHHH
T ss_pred             CCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-HH----HHHh--cC-cEEEEECCHHHHHHHHHHH
Confidence            555578899999999999999999999999999999999998622 11    1111  12 4566777765543 34555


Q ss_pred             EEEEeCC
Q psy7366         160 LTIMVNG  166 (566)
Q Consensus       160 i~vl~~G  166 (566)
                      .+.+++|
T Consensus       239 ~~~~rd~  245 (312)
T 3aez_A          239 FLAMRTT  245 (312)
T ss_dssp             HHHHTTT
T ss_pred             HHHHHhc
Confidence            5444443

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.42  E-value=3.2e-16  Score=164.02  Aligned_cols=169  Identities=18%  Similarity=0.166  Sum_probs=122.0

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHHC------------CCCCCccEEEEcCccCCCchHHh--cCc---eEEEecCCCC
Q psy7366         368 GVGRGECFGLLGLNGAGKTTTFKMLTG------------AIKPTSGNAYVMNHSIRDSMDLV--RSY---IGYCPQFDAL  430 (566)
Q Consensus       368 ~i~~Ge~~~l~G~NGsGKSTLl~~i~G------------~~~~~~G~i~~~g~~~~~~~~~~--~~~---i~~v~q~~~l  430 (566)
                      .+.+|..+||+|+||+|||||+++|+|            ...|+.|.|.+.|..+.......  ++.   ..++.+.+.+
T Consensus        16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl   95 (392)
T 1ni3_A           16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL   95 (392)
T ss_dssp             SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence            457899999999999999999999999            56799999999885432111111  122   2467777888


Q ss_pred             CCCCCHHHHH--HHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCC--CEEEEeCCCC
Q psy7366         431 NDRLTPREHL--EFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNP--PLIFLDEPTS  506 (566)
Q Consensus       431 ~~~~tv~e~l--~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p--~lllLDEPt~  506 (566)
                      +...+..|++  .|...++..+         .++..++..  .+..+..+|++.            +|  +++++|||+.
T Consensus        96 ~~~~s~~e~L~~~fl~~ir~~d---------~il~Vvd~~--~d~~i~~v~~~~------------dP~~di~ildeel~  152 (392)
T 1ni3_A           96 TKGASTGVGLGNAFLSHVRAVD---------AIYQVVRAF--DDAEIIHVEGDV------------DPIRDLSIIVDELL  152 (392)
T ss_dssp             CCCCCSSSSSCHHHHHHHTTCS---------EEEEEEECC--CTTCSSCCSSSS------------CHHHHHHHHHHHHH
T ss_pred             ccCCcHHHHHHHHHHHHHHHHH---------HHHHHHhcc--ccceeeeecccc------------CcchhhhhchhhhH
Confidence            8777765544  3322222111         111111111  245666677764            89  9999999999


Q ss_pred             CCCHHHHHHHHHHHHHH-HhCCcEEEEEccCHHHHHhhCCEEE-EEECC-EEEEecCc
Q psy7366         507 GMDPGARRFLWTCIERA-VSEGRCVILTSHNMEECEALCTKLT-IMVNG-QFTCLGSA  561 (566)
Q Consensus       507 gLD~~~~~~l~~~l~~~-~~~g~tvl~vsHd~~~~~~~~drv~-~l~~G-~i~~~g~~  561 (566)
                      ++|+...+..++.+... .+.|.|++  +|+...+..+||++. +|.+| +++..++.
T Consensus       153 ~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~  208 (392)
T 1ni3_A          153 IKDAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKVYQYLTETKQPIRKGDW  208 (392)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence            99999999999999988 66677764  999999999999999 89999 87766554

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.42  E-value=3.6e-14  Score=149.82  Aligned_cols=153  Identities=18%  Similarity=0.150  Sum_probs=95.3

Q ss_pred             eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecC----------CCCC
Q psy7366         362 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQF----------DALN  431 (566)
Q Consensus       362 l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~----------~~l~  431 (566)
                      -++++|+++.|++++|+|+|||||||||++|+|..+      .+.+.+.+.    +...+++++++          +.+.
T Consensus       147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftT----l~p~~G~V~~~~~~~~~l~DtpGli  216 (416)
T 1udx_A          147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTT----LSPNLGVVEVSEEERFTLADIPGII  216 (416)
T ss_dssp             EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCS----SCCEEEEEECSSSCEEEEEECCCCC
T ss_pred             EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCcccce----ecceeeEEEecCcceEEEEeccccc
Confidence            489999999999999999999999999999999843      223333221    11134444433          3332


Q ss_pred             CCCCHHHHHHHHHHhcCCCchHHH--HHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCC
Q psy7366         432 DRLTPREHLEFYSRVRNVPSVLLN--TIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD  509 (566)
Q Consensus       432 ~~~tv~e~l~~~~~~~~~~~~~~~--~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD  509 (566)
                      ..  ..+       ...+.....+  ++++.++..+++.   +.++.+||+|++|++.+|++|+..|.+|++    +.+|
T Consensus       217 ~~--a~~-------~~~L~~~fl~~~era~~lL~vvDls---~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlD  280 (416)
T 1udx_A          217 EG--ASE-------GKGLGLEFLRHIARTRVLLYVLDAA---DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVD  280 (416)
T ss_dssp             CC--GGG-------SCCSCHHHHHHHTSSSEEEEEEETT---SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCT
T ss_pred             cc--hhh-------hhhhhHHHHHHHHHHHhhhEEeCCc---cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCC
Confidence            21  000       0011111000  0112223333443   567889999999999999999999999999    9999


Q ss_pred             HHHHHHHHHHHHH-HHhCCcEEEEEc-cCHHHHH
Q psy7366         510 PGARRFLWTCIER-AVSEGRCVILTS-HNMEECE  541 (566)
Q Consensus       510 ~~~~~~l~~~l~~-~~~~g~tvl~vs-Hd~~~~~  541 (566)
                      +... ...+.+.+ +.+.+.+++++| |.-+-+.
T Consensus       281 l~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~  313 (416)
T 1udx_A          281 LLEE-EAVKALADALAREGLAVLPVSALTGAGLP  313 (416)
T ss_dssp             TSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHH
T ss_pred             hhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHH
Confidence            9876 44444444 444577777655 4433333

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=99.41  E-value=1.8e-16  Score=163.73  Aligned_cols=176  Identities=18%  Similarity=0.153  Sum_probs=117.4

Q ss_pred             EEEeeeEEEeCCcCCCcceeeeeeEEEeCC-------cEEEEEcCCCCcHHHHHHHHHCCC----CCCccEEEEcCccCC
Q psy7366         343 LVVKRLFKIYANSKGTKPAVNQISFGVGRG-------ECFGLLGLNGAGKTTTFKMLTGAI----KPTSGNAYVMNHSIR  411 (566)
Q Consensus       343 l~~~~l~~~y~~~~~~~~~l~~isl~i~~G-------e~~~l~G~NGsGKSTLl~~i~G~~----~~~~G~i~~~g~~~~  411 (566)
                      +..+++++.|+    ...+++++++.+.+|       +.++|.||||+|||||+++|+|.+    .+.+|.+..++.++.
T Consensus        19 lr~~~l~~~~g----~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~   94 (334)
T 1in4_A           19 LRPKSLDEFIG----QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMA   94 (334)
T ss_dssp             TSCSSGGGCCS----CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHH
T ss_pred             cCCccHHHccC----cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHH
Confidence            33445555554    456889999999877       899999999999999999999998    667777766555432


Q ss_pred             CchHH-hcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCC----chHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHH
Q psy7366         412 DSMDL-VRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVP----SVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKL  486 (566)
Q Consensus       412 ~~~~~-~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~----~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv  486 (566)
                      ..... .+..|.|++|...+.+  ++.|++..........    .....+.+...+..+++.. ...++..||+|++||+
T Consensus        95 ~~~~~~~~~~v~~iDE~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~~~~Ls~~l~sR~  171 (334)
T 1in4_A           95 AILTSLERGDVLFIDEIHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTRSGLLSSPLRSRF  171 (334)
T ss_dssp             HHHHHCCTTCEEEEETGGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EESCGGGSCHHHHTTC
T ss_pred             HHHHHccCCCEEEEcchhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCCcccCCHHHHHhc
Confidence            21111 2457999999776654  7778774433322211    1111233444555555544 6778899999999998


Q ss_pred             HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCE
Q psy7366         487 STAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTK  546 (566)
Q Consensus       487 ~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~dr  546 (566)
                      .++                .+||+.+...+.++|++.++. +     ++|+.+.+..+|++
T Consensus       172 ~l~----------------~~Ld~~~~~~l~~iL~~~~~~~~-----~~~~~~~~~~ia~~  211 (334)
T 1in4_A          172 GII----------------LELDFYTVKELKEIIKRAASLMD-----VEIEDAAAEMIAKR  211 (334)
T ss_dssp             SEE----------------EECCCCCHHHHHHHHHHHHHHTT-----CCBCHHHHHHHHHT
T ss_pred             Cce----------------eeCCCCCHHHHHHHHHHHHHHcC-----CCcCHHHHHHHHHh
Confidence            654                788888899999999887643 4     36888877777654

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=99.40  E-value=1.1e-13  Score=140.18  Aligned_cols=157  Identities=13%  Similarity=0.048  Sum_probs=95.0

Q ss_pred             CCcchHHHHHhccccCCC--ccC--CCCCcccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ--KVP--GSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLN   76 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~--~~~--~~~~~~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~   76 (566)
                      +||||+++.+++.+.+..  .+.  +..........++.++.|...+    ++.+++....    ++..+..+.+.++++
T Consensus        46 ~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~----~~~~~l~~~~----~~~~~~~~~~~~~l~  117 (296)
T 1cr0_A           46 MGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRL----RQSDSLKREI----IENGKFDQWFDELFG  117 (296)
T ss_dssp             SSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCCG----GGCHHHHHHH----HHHTHHHHHHHHHHS
T ss_pred             CCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCCCh----hhccccccCC----CCHHHHHHHHHHHhc
Confidence            699999999999987532  111  0000001111223333333221    2223332211    112233344455554


Q ss_pred             HcCCCcccccccccCChhH-HHHHHHHHHHhCCCCEEEeeCCCC---C---CCH-HHHHHHHHHHHHHHhC-CCEEEEec
Q psy7366          77 KFALGHYSDREVRTLSGGN-KRKLSTAIALLGNPPLIFLDEPTS---G---MDP-GARRFLWTCIERAVSE-GRCVILTS  147 (566)
Q Consensus        77 ~~gl~~~~~~~~~~LSgG~-kqrl~iA~al~~~p~vLlLDEPt~---~---LD~-~~~~~l~~~l~~l~~~-g~tviiis  147 (566)
                      ..++.  .+..+.++|.++ +|++. |+++..+|++|||||||+   +   +|+ ..+..+.+.|++++++ |+|||++|
T Consensus       118 ~~~l~--i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vs  194 (296)
T 1cr0_A          118 NDTFH--LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVIC  194 (296)
T ss_dssp             SSCEE--EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEE
T ss_pred             cCCEE--EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEE
Confidence            33332  233345788888 66666 999999999999999999   5   555 7778899999998654 99999999


Q ss_pred             CCh--h--------------------HHHhhcCEEEEEeCCEE
Q psy7366         148 HNM--E--------------------ECEALCTKLTIMVNGQF  168 (566)
Q Consensus       148 H~~--~--------------------~~~~~~d~i~vl~~G~i  168 (566)
                      |+.  +                    .+..+||+|++|++|+.
T Consensus       195 h~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~  237 (296)
T 1cr0_A          195 HLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ  237 (296)
T ss_dssp             ECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred             ecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence            995  5                    78889999999999985

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.39  E-value=2.6e-13  Score=140.52  Aligned_cols=137  Identities=17%  Similarity=0.147  Sum_probs=76.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHC-CCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchH
Q psy7366         375 FGLLGLNGAGKTTTFKMLTG-AIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVL  453 (566)
Q Consensus       375 ~~l~G~NGsGKSTLl~~i~G-~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~  453 (566)
                      +.|.||||+|||||+++|+| ++.|+.|.+.++|.+...... .+..+++++|.+.+....+-          .+.... 
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----------~~~~~~-  106 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN-RKLELNVVSSPYHLEITPSD----------MGNNDR-  106 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHHHHSCTTCCC-------------------CCEECSSEEEECCC--------------CCH-
T ss_pred             EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc-ccceeeeecccceEEecHhh----------cCCcch-
Confidence            88999999999999999999 889999999999977643222 24568888887543211110          001110 


Q ss_pred             HHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEE
Q psy7366         454 LNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILT  533 (566)
Q Consensus       454 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~v  533 (566)
                        ..+.+.++.+.-....+... .|||           +..+|+++|+|||++ ||+.++..+.+.|.+.. .+.++|++
T Consensus       107 --~~~~~~i~~~~~~~~~~~~~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~-~~~~~Il~  170 (354)
T 1sxj_E          107 --IVIQELLKEVAQMEQVDFQD-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS-KNIRLIMV  170 (354)
T ss_dssp             --HHHHHHHHHHTTTTC------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST-TTEEEEEE
T ss_pred             --HHHHHHHHHHHHhccccccc-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc-CCCEEEEE
Confidence              01223333322111111111 5676           778999999999999 99999999999998763 36899999


Q ss_pred             ccCHHH
Q psy7366         534 SHNMEE  539 (566)
Q Consensus       534 sHd~~~  539 (566)
                      ||+.+.
T Consensus       171 t~~~~~  176 (354)
T 1sxj_E          171 CDSMSP  176 (354)
T ss_dssp             ESCSCS
T ss_pred             eCCHHH
Confidence            999754

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=99.37  E-value=2.1e-14  Score=145.43  Aligned_cols=128  Identities=19%  Similarity=0.105  Sum_probs=88.4

Q ss_pred             eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHH
Q psy7366         363 NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEF  442 (566)
Q Consensus       363 ~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~  442 (566)
                      ++++|+  +|++++++|+||+||||++..|+|.+.+..|+|.+.+.++......                     +.+  
T Consensus        91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~---------------------~ql--  145 (295)
T 1ls1_A           91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAR---------------------EQL--  145 (295)
T ss_dssp             CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHH---------------------HHH--
T ss_pred             ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHH---------------------HHH--
Confidence            567887  9999999999999999999999999998889998887765331100                     000  


Q ss_pred             HHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCC-CCCCCHHHHHHHHHHHH
Q psy7366         443 YSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEP-TSGMDPGARRFLWTCIE  521 (566)
Q Consensus       443 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEP-t~gLD~~~~~~l~~~l~  521 (566)
                                      ..+.+..++.-.....  ..+-.+.+|.+|+.+...+++++|+||| +.++|......+.++.+
T Consensus       146 ----------------~~~~~~~~l~~~~~~~--~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~  207 (295)
T 1ls1_A          146 ----------------RLLGEKVGVPVLEVMD--GESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKE  207 (295)
T ss_dssp             ----------------HHHHHHHTCCEEECCT--TCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHH
T ss_pred             ----------------HHhcccCCeEEEEcCC--CCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhh
Confidence                            0112233443221000  1122345688999988899999999999 99999988888877776


Q ss_pred             HHHhCCcEEEEEc
Q psy7366         522 RAVSEGRCVILTS  534 (566)
Q Consensus       522 ~~~~~g~tvl~vs  534 (566)
                      .+. ...+++++.
T Consensus       208 ~~~-~~~~~lv~~  219 (295)
T 1ls1_A          208 VLG-PDEVLLVLD  219 (295)
T ss_dssp             HHC-CSEEEEEEE
T ss_pred             hcC-CCEEEEEEe
Confidence            553 334444443

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=99.36  E-value=4e-15  Score=151.76  Aligned_cols=139  Identities=14%  Similarity=0.143  Sum_probs=100.3

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEE-------------------eCCcEEEEEcCCCCcHHHHHHHHHCCCC--CC
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGV-------------------GRGECFGLLGLNGAGKTTTFKMLTGAIK--PT  399 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i-------------------~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--~~  399 (566)
                      .+|+++++++.|.      +++++++|.+                   .+|+++||+||||||||||+++|+|+++  |+
T Consensus        36 ~~i~~~~v~~~y~------~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~  109 (308)
T 1sq5_A           36 EDLSLEEVAEIYL------PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPE  109 (308)
T ss_dssp             TTCCHHHHHHTHH------HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT
T ss_pred             cccchHhHHHHHH------HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC
Confidence            4588999999883      5889999988                   9999999999999999999999999988  99


Q ss_pred             ccEEEE---cCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcC
Q psy7366         400 SGNAYV---MNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVR  476 (566)
Q Consensus       400 ~G~i~~---~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~  476 (566)
                      +|+|.+   +|.....   ..++.++++ |...+++.+++.+|+.+...+.....                  ....+..
T Consensus       110 ~G~i~vi~~d~~~~~~---~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~~~~~------------------~i~~P~~  167 (308)
T 1sq5_A          110 HRRVELITTDGFLHPN---QVLKERGLM-KKKGFPESYDMHRLVKFVSDLKSGVP------------------NVTAPVY  167 (308)
T ss_dssp             CCCEEEEEGGGGBCCH---HHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHTTTCS------------------CEEECCE
T ss_pred             CCeEEEEecCCccCcH---HHHHhCCEe-ecCCCCCCccHHHHHHHHHHHhCCCC------------------ceecccc
Confidence            999999   8876432   223457888 87777788899999887654432100                  0112222


Q ss_pred             cCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCC
Q psy7366         477 TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD  509 (566)
Q Consensus       477 ~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD  509 (566)
                      ..+.+  +|+..+.+.+.+++++|+|.|....+
T Consensus       168 ~~~~~--~~~~~~~~~~~~~~ivIlEG~~l~~~  198 (308)
T 1sq5_A          168 SHLIY--DVIPDGDKTVVQPDILILEGLNVLQS  198 (308)
T ss_dssp             ETTTT--EECTTCCEEEC-CCEEEEECTTTTCC
T ss_pred             ccccc--CcccccceecCCCCEEEECchhhCCC
Confidence            22322  22222223456789999999988776

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=99.35  E-value=2.7e-14  Score=144.10  Aligned_cols=126  Identities=16%  Similarity=0.092  Sum_probs=89.0

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHHHH-----
Q psy7366         370 GRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYS-----  444 (566)
Q Consensus       370 ~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~-----  444 (566)
                      .++.++||+|++|||||||.+.|.+++.+. |      ..        ++.+.+|+||..+++. +..+|+.+..     
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~~--------~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l   92 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------GG--------EKSIGYASIDDFYLTH-EDQLKLNEQFKNNKL   92 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------GG--------GSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGG
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------CC--------CceEEEeccccccCCh-HHHHHHhccccccch
Confidence            467799999999999999999999998763 2      10        2345566999877654 8888887642     


Q ss_pred             -HhcCCCchHHHHHHHHHHHHcCCC------C--ccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHH
Q psy7366         445 -RVRNVPSVLLNTIVNESLNKFALG------H--YSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPG  511 (566)
Q Consensus       445 -~~~~~~~~~~~~~~~~~l~~~~l~------~--~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~  511 (566)
                       ...+.+.......+.+.++.+.-.      .  ....+...+||||+||+.+|++...+|+|||+||||+++|+.
T Consensus        93 ~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~  168 (290)
T 1odf_A           93 LQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPI  168 (290)
T ss_dssp             GSSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCC
T ss_pred             hhhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCcc
Confidence             111233333344566667666432      1  134456789999999999884433399999999999999985

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.34  E-value=2.5e-14  Score=145.38  Aligned_cols=110  Identities=13%  Similarity=0.147  Sum_probs=76.1

Q ss_pred             EEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEE---cCccCCCchHHhc-CceEEEecCCC-------------
Q psy7366         367 FGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV---MNHSIRDSMDLVR-SYIGYCPQFDA-------------  429 (566)
Q Consensus       367 l~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~---~g~~~~~~~~~~~-~~i~~v~q~~~-------------  429 (566)
                      |++.+|++++|+||||||||||+|+|+|+.+|++|+|.+   +|++++......+ +.+||++|.|.             
T Consensus       164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~  243 (301)
T 1u0l_A          164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE  243 (301)
T ss_dssp             HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred             HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence            456689999999999999999999999999999999999   8988764322222 36899999975             


Q ss_pred             ---CCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCC-CccccCcCcCCh
Q psy7366         430 ---LNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALG-HYSDREVRTLSG  480 (566)
Q Consensus       430 ---l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSg  480 (566)
                         +|+.+|+ +|+.|....+   ..+...++.++++.++|. +..++++..||.
T Consensus       244 ~~~l~~~~~~-~n~~~~~~~~---~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse  294 (301)
T 1u0l_A          244 LKHYFKEFGD-KQCFFSDCNH---VDEPECGVKEAVENGEIAESRYENYVKMFYE  294 (301)
T ss_dssp             HGGGSTTSSS-CCCSSTTCCS---SSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHhccc-ccCcCCCCcC---CCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence               4788888 8887642111   122345688999999995 677888888885

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=99.32  E-value=3.4e-13  Score=138.63  Aligned_cols=67  Identities=19%  Similarity=0.119  Sum_probs=57.9

Q ss_pred             hhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHHhhcCEEEEEeCCE
Q psy7366          93 GGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ  167 (566)
Q Consensus        93 gG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~~~d~i~vl~~G~  167 (566)
                      |||+||++||+||..+|++|||||||+       .+++++|+.+...+.|+|+++|+.+ +.+.|||+++|.+|.
T Consensus       225 gg~~~r~~la~aL~~~p~ilildE~~~-------~e~~~~l~~~~~g~~tvi~t~H~~~-~~~~~dri~~l~~g~  291 (330)
T 2pt7_A          225 GNITSADCLKSCLRMRPDRIILGELRS-------SEAYDFYNVLCSGHKGTLTTLHAGS-SEEAFIRLANMSSSN  291 (330)
T ss_dssp             TTBCHHHHHHHHTTSCCSEEEECCCCS-------THHHHHHHHHHTTCCCEEEEEECSS-HHHHHHHHHHHHHTS
T ss_pred             CChhHHHHHHHHhhhCCCEEEEcCCCh-------HHHHHHHHHHhcCCCEEEEEEcccH-HHHHhhhheehhcCC
Confidence            899999999999999999999999998       2456777776543458999999998 777899999998876

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=99.32  E-value=5.6e-16  Score=155.41  Aligned_cols=144  Identities=15%  Similarity=0.074  Sum_probs=102.2

Q ss_pred             cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCceEEEecCC-CCCCCCCH
Q psy7366         359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSYIGYCPQFD-ALNDRLTP  436 (566)
Q Consensus       359 ~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~i~~v~q~~-~l~~~~tv  436 (566)
                      ..+++++++.+++|  ++|+||||||||||+++|+|...+  |.|.++|.++.. ......+.++++||.. ...+.+++
T Consensus        33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~  108 (274)
T 2x8a_A           33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIF  108 (274)
T ss_dssp             HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred             HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEe
Confidence            45789999999999  999999999999999999999876  799999988753 2233344577788764 34455566


Q ss_pred             HHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCC----------
Q psy7366         437 REHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTS----------  506 (566)
Q Consensus       437 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~----------  506 (566)
                      .|++......+.      ....      -......++.+.+|||||+||+.|++|+..+|++|  |||+.          
T Consensus       109 ~Deid~~~~~r~------~~~~------~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~  174 (274)
T 2x8a_A          109 FDEVDALCPRRS------DRET------GASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLF  174 (274)
T ss_dssp             EETCTTTCC---------------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEE
T ss_pred             eehhhhhhcccC------CCcc------hHHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEE
Confidence            666543211110      0000      01234456778899999999999999999999985  99864          


Q ss_pred             --CCCHHHHHHHHHHH
Q psy7366         507 --GMDPGARRFLWTCI  520 (566)
Q Consensus       507 --gLD~~~~~~l~~~l  520 (566)
                        --|...+..+++.+
T Consensus       175 ~~~P~~~~r~~il~~~  190 (274)
T 2x8a_A          175 VGLPPPADRLAILKTI  190 (274)
T ss_dssp             CCSCCHHHHHHHHHHH
T ss_pred             eCCcCHHHHHHHHHHH
Confidence              33677777766544

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=99.31  E-value=8.8e-15  Score=140.44  Aligned_cols=131  Identities=15%  Similarity=0.130  Sum_probs=107.4

Q ss_pred             CCcchHHHHHhccccCCCccCCCCCcccccccceeEEcCCCCCC--CCCCHHHHHHHHHHhcCCChhhHHHHHHHHHHHc
Q psy7366           1 MGLTTTPKRVVTLLLTTQKVPGSNPTIDKNLSYIGYCPQFDALN--DRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKF   78 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~l~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~   78 (566)
                      +||||++|++.+++-+                .++|++|++.++  ..+|+.++..+..   +.+.....+++.+.++.+
T Consensus        17 sGKSTl~~~l~~~~~~----------------~i~~v~~d~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~   77 (211)
T 3asz_A           17 SGKTTLAQALARTLGE----------------RVALLPMDHYYKDLGHLPLEERLRVNY---DHPDAFDLALYLEHAQAL   77 (211)
T ss_dssp             SSHHHHHHHHHHHHGG----------------GEEEEEGGGCBCCCTTSCHHHHHHSCT---TSGGGBCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhCC----------------CeEEEecCccccCcccccHHHhcCCCC---CChhhhhHHHHHHHHHHH
Confidence            5999999999998742                499999998776  4689988875431   222233345677888888


Q ss_pred             CCCcccccccccCChhHH----HHHHHHHHHhCCCCEEEeeCCCCC-------CCHHHHHHHHHHHHHH-HhCCCEEEEe
Q psy7366          79 ALGHYSDREVRTLSGGNK----RKLSTAIALLGNPPLIFLDEPTSG-------MDPGARRFLWTCIERA-VSEGRCVILT  146 (566)
Q Consensus        79 gl~~~~~~~~~~LSgG~k----qrl~iA~al~~~p~vLlLDEPt~~-------LD~~~~~~l~~~l~~l-~~~g~tviii  146 (566)
                      ++....++++.++|+|++    ||+++|++++.+|.++++||||++       ||+.....+.+.+++. ++.|.|++++
T Consensus        78 ~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~  157 (211)
T 3asz_A           78 LRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGV  157 (211)
T ss_dssp             HTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred             HcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHH
Confidence            888877888999999974    688999999999999999999999       9999999999998875 4569999999


Q ss_pred             cCCh
Q psy7366         147 SHNM  150 (566)
Q Consensus       147 sH~~  150 (566)
                      +|+.
T Consensus       158 ~~~~  161 (211)
T 3asz_A          158 VAQY  161 (211)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9984

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=99.31  E-value=2.1e-14  Score=152.94  Aligned_cols=152  Identities=13%  Similarity=0.110  Sum_probs=113.5

Q ss_pred             CCcchHHHHHhccccCCCc---cCCCC---Ccc--------cccccceeEEcCC-CCCCCCCCHHHHHHHHHHhcCCChh
Q psy7366           1 MGLTTTPKRVVTLLLTTQK---VPGSN---PTI--------DKNLSYIGYCPQF-DALNDRLTPREHLEFYSRVRNVPSV   65 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~---~~~~~---~~~--------~~~~~~ig~v~Q~-~~l~~~~tv~e~l~~~~~~~~~~~~   65 (566)
                      .||||++|+|+++.-++..   +.|..   ...        ....+.|+|++|+ ..+++.+|+.+|+.+.++.+.... 
T Consensus       168 sGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~-  246 (438)
T 2dpy_A          168 VGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRG-  246 (438)
T ss_dssp             SSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTT-
T ss_pred             CCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCC-
Confidence            5999999999999876652   22221   100        1123569999995 456677899999987665431100 


Q ss_pred             hHHHHHHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHh---C-CC
Q psy7366          66 LLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS---E-GR  141 (566)
Q Consensus        66 ~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~---~-g~  141 (566)
                                  -......+ .+..||+|| ||++||   +.+|++      |++||+.....+.+++.++.+   + |.
T Consensus       247 ------------~~v~~~ld-~l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~Gs  303 (438)
T 2dpy_A          247 ------------QHVLLIMD-SLTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGS  303 (438)
T ss_dssp             ------------CEEEEEEE-CHHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCE
T ss_pred             ------------CCHHHHHH-hHHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCc
Confidence                        00111122 378899999 999999   889988      999999999999999999865   3 64


Q ss_pred             -----EEEEecCChhHHHhhcCEEEEEeCCEEEEecChhHHH
Q psy7366         142 -----CVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  178 (566)
Q Consensus       142 -----tviiisH~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~  178 (566)
                           ||+++|||++  ..+||++++|.+|+++..+++.++.
T Consensus       304 iT~~~tVlv~tHdl~--~~iad~v~~l~dG~Ivl~~~~~~~~  343 (438)
T 2dpy_A          304 ITAFYTVLTEGDDQQ--DPIADSARAILDGHIVLSRRLAEAG  343 (438)
T ss_dssp             EEEEEEEECSSSCSC--CHHHHHHHHHSSEEEEECHHHHHTT
T ss_pred             ccceeEEEEeCCCcc--chhhceEEEEeCcEEEEeCCHHHcc
Confidence                 9999999998  6789999999999999998887653

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=99.30  E-value=7.7e-14  Score=141.38  Aligned_cols=118  Identities=12%  Similarity=0.145  Sum_probs=71.3

Q ss_pred             EEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEE---cCccCCCchHHhcCceEEEecCCCCCC----CCCHHHH
Q psy7366         367 FGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV---MNHSIRDSMDLVRSYIGYCPQFDALND----RLTPREH  439 (566)
Q Consensus       367 l~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~---~g~~~~~~~~~~~~~i~~v~q~~~l~~----~~tv~e~  439 (566)
                      +++.+|++++|+||||+|||||+|+|+|+.+|..|+|.+   +|+.++......+..++|++|.|.+..    .+|+ |+
T Consensus       168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~  246 (307)
T 1t9h_A          168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EE  246 (307)
T ss_dssp             GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HH
T ss_pred             HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HH
Confidence            456789999999999999999999999999999999998   887765432222223799999987654    6789 88


Q ss_pred             HH--HHH--Hh------cC-CCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHH
Q psy7366         440 LE--FYS--RV------RN-VPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRK  485 (566)
Q Consensus       440 l~--~~~--~~------~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqr  485 (566)
                      +.  |..  .+      .+ ....+....+.++++.++|.+........|+.|++||
T Consensus       247 l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~~lls~~~~~  303 (307)
T 1t9h_A          247 LGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEFMTEIKDR  303 (307)
T ss_dssp             HGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHhhc
Confidence            83  221  01      11 1122223567899999999865556666777788773

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=99.30  E-value=6.4e-16  Score=149.70  Aligned_cols=152  Identities=10%  Similarity=0.034  Sum_probs=102.2

Q ss_pred             CCcchHHHHHhccccCCCccCCCCCcc----cccccceeEEcCCCCCCCCCC-HHHHHH---HHHHhcCCChhhHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQKVPGSNPTI----DKNLSYIGYCPQFDALNDRLT-PREHLE---FYSRVRNVPSVLLNTIVN   72 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~~~~~~~~~----~~~~~~ig~v~Q~~~l~~~~t-v~e~l~---~~~~~~~~~~~~~~~~~~   72 (566)
                      .||||++|++++++ +|+...+.+...    .....+++|++|++.+|+.++ +.+++.   +....++.+    ...++
T Consensus        34 sGKSTLl~~L~g~~-pG~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~----~~~i~  108 (218)
T 1z6g_A           34 VGKGTLIKKLLNEF-PNYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFLEYDNYANNFYGTL----KSEYD  108 (218)
T ss_dssp             SSHHHHHHHHHHHS-TTTEEECCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEE----HHHHH
T ss_pred             CCHHHHHHHHHhhC-CCcEEEeecccCCCCCcccccCCeEEECCHHHHHHhhhccchhhhhhcccccCCCc----HHHHH
Confidence            59999999999988 555321222111    112357999999987665432 111111   111112222    23456


Q ss_pred             HHHHHcCCCcccccccccCChhHHHHHHH-----HHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHh-------CC
Q psy7366          73 ESLNKFALGHYSDREVRTLSGGNKRKLST-----AIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS-------EG  140 (566)
Q Consensus        73 ~~l~~~gl~~~~~~~~~~LSgG~kqrl~i-----A~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~-------~g  140 (566)
                      ++++...+. ..+   .+|||||+||++|     |++++.+|++++|||||+++|..+.+.+.+.|.++.+       .+
T Consensus       109 ~~l~~~~~~-il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~  184 (218)
T 1z6g_A          109 KAKEQNKIC-LFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLN  184 (218)
T ss_dssp             HHHHTTCEE-EEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHhCCCcE-EEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccC
Confidence            666654432 222   5799999999999     8999999999999999999999999999888877633       35


Q ss_pred             CEEEEecCChhHHHhhcCEEE
Q psy7366         141 RCVILTSHNMEECEALCTKLT  161 (566)
Q Consensus       141 ~tviiisH~~~~~~~~~d~i~  161 (566)
                      ...|+++|+++++...+++++
T Consensus       185 ~d~iiv~~~~~ea~~~~~~ii  205 (218)
T 1z6g_A          185 FNLSIINDDLTLTYQQLKNYL  205 (218)
T ss_dssp             CSEEEECSSHHHHHHHHHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHH
Confidence            667788888888877777765

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=99.30  E-value=2.7e-13  Score=155.85  Aligned_cols=88  Identities=24%  Similarity=0.248  Sum_probs=72.8

Q ss_pred             cccCChhHHHHHHHHHHH--hCCCCEEEeeCCCCCCCHHHHHHH-HHHHHHHHh-CCCEEEEecCChhHHHhhcCEEEEE
Q psy7366          88 VRTLSGGNKRKLSTAIAL--LGNPPLIFLDEPTSGMDPGARRFL-WTCIERAVS-EGRCVILTSHNMEECEALCTKLTIM  163 (566)
Q Consensus        88 ~~~LSgG~kqrl~iA~al--~~~p~vLlLDEPt~~LD~~~~~~l-~~~l~~l~~-~g~tviiisH~~~~~~~~~d~i~vl  163 (566)
                      ...+|++++++..+|+++  +.+|+++||||||+|||+.....+ +.+++.+.+ .|.++|++||+. ++..+||++..+
T Consensus       719 ~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~-el~~lad~~~~v  797 (934)
T 3thx_A          719 LKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH-ELTALANQIPTV  797 (934)
T ss_dssp             ----CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG-GGGGGGGTCTTE
T ss_pred             HHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH-HHHHHhccccee
Confidence            346788888888888888  899999999999999999988887 788888876 499999999995 555799999999


Q ss_pred             eCCEEEEecChhH
Q psy7366         164 VNGQFTCLGSATH  176 (566)
Q Consensus       164 ~~G~i~~~g~~~~  176 (566)
                      ++|++...++.++
T Consensus       798 ~ng~v~~~~~~~~  810 (934)
T 3thx_A          798 NNLHVTALTTEET  810 (934)
T ss_dssp             EEEEEEEEEETTE
T ss_pred             EeeEEEEEecCCc
Confidence            9999988776554

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=99.25  E-value=1e-15  Score=146.00  Aligned_cols=152  Identities=18%  Similarity=0.160  Sum_probs=82.4

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHHCCCC-------------CCccEEEEcCccCCC-chHHhcCceEEEecCCCCCCCCC
Q psy7366         370 GRGECFGLLGLNGAGKTTTFKMLTGAIK-------------PTSGNAYVMNHSIRD-SMDLVRSYIGYCPQFDALNDRLT  435 (566)
Q Consensus       370 ~~Ge~~~l~G~NGsGKSTLl~~i~G~~~-------------~~~G~i~~~g~~~~~-~~~~~~~~i~~v~q~~~l~~~~t  435 (566)
                      ++|++++|+||||||||||+++|+|+++             |..|+  ++|.++.. ....+++.+   +|+..++. .+
T Consensus         2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~-~~   75 (198)
T 1lvg_A            2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEH-AE   75 (198)
T ss_dssp             ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEE-EE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEee-ee
Confidence            5799999999999999999999999875             56665  45554422 122222221   23222111 12


Q ss_pred             HHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHH----HHHHHH-HHcCCCCEEEEeCCCCCCCH
Q psy7366         436 PREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKR----KLSTAI-ALLGNPPLIFLDEPTSGMDP  510 (566)
Q Consensus       436 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkq----rv~la~-al~~~p~lllLDEPt~gLD~  510 (566)
                      +.+|+      ++.+.    +.+.++++.-.. ...+..+    .|-++    ++ .++ +++.+|++++|||||+++|.
T Consensus        76 ~~~n~------~g~~~----~~i~~~~~~~~~-~~~~~~~----~g~~~~~~~~~-~~~~~~l~~p~~~ilde~~~~~d~  139 (198)
T 1lvg_A           76 FSGNL------YGTSK----EAVRAVQAMNRI-CVLDVDL----QGVRSIKKTDL-CPIYIFVQPPSLDVLEQRLRLRNT  139 (198)
T ss_dssp             ETTEE------EEEEH----HHHHHHHHTTCE-EEEECCH----HHHHHHTTSSC-CCEEEEEECSCHHHHHHHHHHHTC
T ss_pred             ecCcc------CCCCH----HHHHHHHHcCCc-EEEECCH----HHHHHHHhcCC-CcEEEEEeCCCHHHHHHHHHhcCC
Confidence            22222      11111    122333332100 0000000    01110    11 455 67888889999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEE
Q psy7366         511 GARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMV  551 (566)
Q Consensus       511 ~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~  551 (566)
                      .+.+.+.+.|..+.++    +.++|.  .  ..+|++++++
T Consensus       140 ~~e~~i~~~l~~~~~~----~~~a~~--~--~~~D~iivnd  172 (198)
T 1lvg_A          140 ETEESLAKRLAAARTD----MESSKE--P--GLFDLVIIND  172 (198)
T ss_dssp             SCHHHHHHHHHHHHHH----TTGGGS--T--TTCSEEEECS
T ss_pred             CCHHHHHHHHHHHHHH----HHHhhc--c--CCceEEEECC
Confidence            9999998888776543    233451  1  4578877765

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=99.24  E-value=2.4e-14  Score=137.45  Aligned_cols=114  Identities=11%  Similarity=0.095  Sum_probs=66.4

Q ss_pred             EeCCcEEEEEcCCCCcHHHHHHHHHCCCCCC---ccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHHHHH
Q psy7366         369 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPT---SGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSR  445 (566)
Q Consensus       369 i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~  445 (566)
                      .++|++++|+||||||||||+++|+|+++|.   .|.|.++|..+..                      +..+++.... 
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~----------------------~~~~~~~~~~-   75 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDN----------------------RLLEPRGLLP-   75 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCH----------------------HHHGGGTCGG-
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCH----------------------HHHHHhcccc-
Confidence            4789999999999999999999999999864   4555555544321                      1111110000 


Q ss_pred             hcCCCchHHHHHHHHHHHHcCCCCc----cccCcCcCChhHHHHHHHH-HHHcCCCCEEEEeCCC
Q psy7366         446 VRNVPSVLLNTIVNESLNKFALGHY----SDREVRTLSGGNKRKLSTA-IALLGNPPLIFLDEPT  505 (566)
Q Consensus       446 ~~~~~~~~~~~~~~~~l~~~~l~~~----~~~~~~~LSgGqkqrv~la-~al~~~p~lllLDEPt  505 (566)
                      ..+.+.......+.+.+..+...+.    .......+|+||+|+++++ ++++.++.++++|||.
T Consensus        76 ~~~~~~~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~  140 (208)
T 3c8u_A           76 RKGAPETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG  140 (208)
T ss_dssp             GTTSGGGBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred             cCCCCchhhHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCch
Confidence            0011111111112222322211111    1122335799999999988 8888888888888874

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=99.23  E-value=7.2e-12  Score=125.66  Aligned_cols=139  Identities=9%  Similarity=0.038  Sum_probs=93.6

Q ss_pred             CCcchHHHHHhccccCCCccCCCCCcccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCC
Q psy7366           1 MGLTTTPKRVVTLLLTTQKVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFAL   80 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl   80 (566)
                      +||||+++.+++.+..|..+.+..+.   ....+.|+..+...   ..+.+.+.-..  ...+    .....++++.+++
T Consensus        41 sGKTtl~~~l~~~~~~g~~~~g~~~~---~~~~v~~~~~e~~~---~~~~~r~~~~g--~~~~----~~~~~~~~~~l~l  108 (279)
T 1nlf_A           41 AGKSMLALQLAAQIAGGPDLLEVGEL---PTGPVIYLPAEDPP---TAIHHRLHALG--AHLS----AEERQAVADGLLI  108 (279)
T ss_dssp             SSHHHHHHHHHHHHHTCCCTTCCCCC---CCCCEEEEESSSCH---HHHHHHHHHHH--TTSC----HHHHHHHHHHEEE
T ss_pred             CCHHHHHHHHHHHHhcCCCcCCCccC---CCccEEEEECCCCH---HHHHHHHHHHH--hhcC----hhhhhhccCceEE
Confidence            59999999999877777655443221   12357777655321   01111111100  1122    2345667888888


Q ss_pred             CcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCC--CCCHHHH---HHHHHHHHHHH-hCCCEEEEecCChhHHH
Q psy7366          81 GHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTS--GMDPGAR---RFLWTCIERAV-SEGRCVILTSHNMEECE  154 (566)
Q Consensus        81 ~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~--~LD~~~~---~~l~~~l~~l~-~~g~tviiisH~~~~~~  154 (566)
                      ....++++..||+||+|++   ++++.+|+++||||||+  ++|+...   ..+.+.|++++ +.|+|||+++|+.....
T Consensus       109 ~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~~~  185 (279)
T 1nlf_A          109 QPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASKGAA  185 (279)
T ss_dssp             CCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC-----
T ss_pred             eecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCCccc
Confidence            8777889999999997765   68888999999999999  9998544   78888888885 55999999999987654

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=99.20  E-value=2.6e-12  Score=125.70  Aligned_cols=59  Identities=17%  Similarity=0.115  Sum_probs=43.8

Q ss_pred             CCCCEEEEeCCCCCC--CHHHHHHHHHHHHHH-HhCCcEEEEEccCHHH--------HHhhCCEEEEEEC
Q psy7366         494 GNPPLIFLDEPTSGM--DPGARRFLWTCIERA-VSEGRCVILTSHNMEE--------CEALCTKLTIMVN  552 (566)
Q Consensus       494 ~~p~lllLDEPt~gL--D~~~~~~l~~~l~~~-~~~g~tvl~vsHd~~~--------~~~~~drv~~l~~  552 (566)
                      .+|+++++|+|+..+  |+.....+...+.++ ++.|.|||+++|....        +..+||.++.|+.
T Consensus       127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~  196 (247)
T 2dr3_A          127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL  196 (247)
T ss_dssp             HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred             hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence            579999999999988  654444444445444 4569999999998876        5678999999964

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=99.19  E-value=1.8e-11  Score=123.87  Aligned_cols=141  Identities=17%  Similarity=0.221  Sum_probs=93.8

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCC
Q psy7366         370 GRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNV  449 (566)
Q Consensus       370 ~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~  449 (566)
                      .+|++++|+||||+||||+++.|++.+.+++|.                 ++.++.+|+.   ..+..+++.....    
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~-----------------~V~lv~~D~~---r~~a~eqL~~~~~----  158 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHK-----------------KIAFITTDTY---RIAAVEQLKTYAE----  158 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCC-----------------CEEEEECCCS---STTHHHHHHHHHT----
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-----------------EEEEEecCcc---cchHHHHHHHHHH----
Confidence            479999999999999999999999999887771                 4667777652   2355555543322    


Q ss_pred             CchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--hC-
Q psy7366         450 PSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAV--SE-  526 (566)
Q Consensus       450 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~--~~-  526 (566)
                                    .+++.....     .+ +..-+.++++  +.+|+++|+|  |+|+|+.....+.++.+-+.  .. 
T Consensus       159 --------------~~gl~~~~~-----~~-~~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~  214 (296)
T 2px0_A          159 --------------LLQAPLEVC-----YT-KEEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSI  214 (296)
T ss_dssp             --------------TTTCCCCBC-----SS-HHHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTE
T ss_pred             --------------hcCCCeEec-----CC-HHHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCC
Confidence                          223321111     12 2333555554  5899999999  89999877665555444332  12 


Q ss_pred             CcEEEE-EccCHHHHHhhCCEEEEEECCEEEEe
Q psy7366         527 GRCVIL-TSHNMEECEALCTKLTIMVNGQFTCL  558 (566)
Q Consensus       527 g~tvl~-vsHd~~~~~~~~drv~~l~~G~i~~~  558 (566)
                      +..+++ +||+.+++.++|+++..+..+.++..
T Consensus       215 ~~~lVl~at~~~~~~~~~~~~~~~l~~~giVlt  247 (296)
T 2px0_A          215 QSFLVLSATAKYEDMKHIVKRFSSVPVNQYIFT  247 (296)
T ss_dssp             EEEEEEETTBCHHHHHHHTTTTSSSCCCEEEEE
T ss_pred             eEEEEEECCCCHHHHHHHHHHHhcCCCCEEEEe
Confidence            334444 49999999999988766666776653

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=99.19  E-value=3e-12  Score=125.96  Aligned_cols=142  Identities=11%  Similarity=0.077  Sum_probs=97.7

Q ss_pred             CCcchHHHHHhccccCCCccCCCCCcccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChh--hHHHHHHHHHHHc
Q psy7366           1 MGLTTTPKRVVTLLLTTQKVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSV--LLNTIVNESLNKF   78 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~--~~~~~~~~~l~~~   78 (566)
                      +||||++|++.+++  |...-.      .....|++++|++ +++.+|+.+++.+.......+..  ...+++.+.++.+
T Consensus        36 sGKSTl~k~L~~~l--G~~~~~------~~~~~i~~v~~d~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l  106 (245)
T 2jeo_A           36 SGKSTVCEKIMELL--GQNEVE------QRQRKVVILSQDR-FYKVLTAEQKAKALKGQYNFDHPDAFDNDLMHRTLKNI  106 (245)
T ss_dssp             SSHHHHHHHHHHHH--TGGGSC------GGGCSEEEEEGGG-GBCCCCHHHHHHHHTTCCCTTSGGGBCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHh--chhccc------ccCCceEEEeCCc-CccccCHhHhhhhhccCCCCCCcccccHHHHHHHHHHH
Confidence            59999999999977  432211      2235699999995 77789999999775443333211  1233445555543


Q ss_pred             CCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHH-Hhhc
Q psy7366          79 ALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEEC-EALC  157 (566)
Q Consensus        79 gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~-~~~~  157 (566)
                        ....++++..||+||+||+++ ++++.+|+++|||||...+|+.    +    .++  .+.+|+++||+...+ ..++
T Consensus       107 --~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~----l----~~~--~~~~i~v~th~~~~~~r~~~  173 (245)
T 2jeo_A          107 --VEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE----I----RDM--FHLRLFVDTDSDVRLSRRVL  173 (245)
T ss_dssp             --HTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH----H----HTT--CSEEEEEECCHHHHHHHHHH
T ss_pred             --HCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHH----H----HHh--cCeEEEEECCHHHHHHHHHH
Confidence              345678899999999999988 5888999999999998888764    2    222  378999999985444 4455


Q ss_pred             CEEEEEeCCE
Q psy7366         158 TKLTIMVNGQ  167 (566)
Q Consensus       158 d~i~vl~~G~  167 (566)
                      +++   ++|+
T Consensus       174 r~~---~~G~  180 (245)
T 2jeo_A          174 RDV---RRGR  180 (245)
T ss_dssp             HHT---C---
T ss_pred             HHH---HcCC
Confidence            555   6665

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=99.19  E-value=3.4e-13  Score=130.57  Aligned_cols=61  Identities=16%  Similarity=0.102  Sum_probs=45.7

Q ss_pred             CCCCEEEeeCCCCCCCHH-------H-----HHHHHHHHHHHHh-CCCEEEEecCChhH----HHhhcCEEEEEeCCE
Q psy7366         107 GNPPLIFLDEPTSGMDPG-------A-----RRFLWTCIERAVS-EGRCVILTSHNMEE----CEALCTKLTIMVNGQ  167 (566)
Q Consensus       107 ~~p~vLlLDEPt~~LD~~-------~-----~~~l~~~l~~l~~-~g~tviiisH~~~~----~~~~~d~i~vl~~G~  167 (566)
                      .+|++|+|||||++||+.       +     ...+.+.|.++.+ .|.|||++||..++    +..+||++++|++|+
T Consensus       124 ~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~  201 (231)
T 4a74_A          124 RPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK  201 (231)
T ss_dssp             SCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred             CceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence            499999999999999984       2     2366777777654 59999999996655    899999999998754

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=99.18  E-value=1.4e-11  Score=124.97  Aligned_cols=99  Identities=15%  Similarity=0.177  Sum_probs=75.7

Q ss_pred             eeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHHH
Q psy7366         364 QISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFY  443 (566)
Q Consensus       364 ~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~  443 (566)
                      .+++...+|++++|+|||||||||+++.|++.+++..|+|.+.+.+....                     ...++    
T Consensus        96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~---------------------~a~eq----  150 (306)
T 1vma_A           96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA---------------------AAIEQ----  150 (306)
T ss_dssp             CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH---------------------HHHHH----
T ss_pred             CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccH---------------------HHHHH----
Confidence            34666789999999999999999999999999998888888776553211                     00111    


Q ss_pred             HHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHH---HHHHHHcCCCCEEEEeCCCC
Q psy7366         444 SRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKL---STAIALLGNPPLIFLDEPTS  506 (566)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv---~la~al~~~p~lllLDEPt~  506 (566)
                                    +..+.+.+++..     +..+|+|+.+++   ++++++..+|+++|+|||..
T Consensus       151 --------------L~~~~~~~gl~~-----~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~  197 (306)
T 1vma_A          151 --------------LKIWGERVGATV-----ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR  197 (306)
T ss_dssp             --------------HHHHHHHHTCEE-----ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred             --------------HHHHHHHcCCcE-----EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence                          223445556542     346789999999   89999999999999999975

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=99.17  E-value=7.5e-15  Score=143.21  Aligned_cols=178  Identities=13%  Similarity=0.058  Sum_probs=69.1

Q ss_pred             ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHH-CCCCCCccEEEEcCccCCC-ch-HHhcCceEEEecCCCCCCCCCH
Q psy7366         360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT-GAIKPTSGNAYVMNHSIRD-SM-DLVRSYIGYCPQFDALNDRLTP  436 (566)
Q Consensus       360 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~-G~~~~~~G~i~~~g~~~~~-~~-~~~~~~i~~v~q~~~l~~~~tv  436 (566)
                      +..+++||++++|++++|+||||||||||+++|+ |++++.     +.+.+... .. ......++|.++++..+..++.
T Consensus        15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~-----~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~   89 (231)
T 3lnc_A           15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNI-----VKSVSVTTRAARKGEKEGKDYYFVDREEFLRLCS   89 (231)
T ss_dssp             -------CCEECCCEEEEECSCC----CHHHHHHC----CE-----EECCCEESSCCCTTCCBTTTBEECCHHHHHHHHH
T ss_pred             cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCc-----ccccccCCCCCCccccCCCeEEEecHHHhhhhhh
Confidence            4578999999999999999999999999999999 998541     22222111 00 0001233455554332222222


Q ss_pred             HHHHHH----HHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHH-HHH-HHHcCCCCEEEEeCCCCCCCH
Q psy7366         437 REHLEF----YSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKL-STA-IALLGNPPLIFLDEPTSGMDP  510 (566)
Q Consensus       437 ~e~l~~----~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv-~la-~al~~~p~lllLDEPt~gLD~  510 (566)
                      .+++..    ....++.+..    .+.+.++.-. .-..+-.+.. ...-++++ .-+ ..++..|+..+++|++...|.
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~----~i~~~~~~~~-~vild~~~~g-~~~~~~~~~~~~~~v~v~~~~~~~l~~Rl~~R~~  163 (231)
T 3lnc_A           90 NGEIIEHAEVFGNFYGVPRK----NLEDNVDKGV-STLLVIDWQG-AFKFMEMMREHVVSIFIMPPSMEELRRRLCGRRA  163 (231)
T ss_dssp             TTCEEEEEEETTEEEEEECT----THHHHHHHTC-EEEEECCHHH-HHHHHHHSGGGEEEEEEECSCHHHHHHC------
T ss_pred             cCceehhhhhccccCCCCHH----HHHHHHHcCC-eEEEEcCHHH-HHHHHHhcCCCeEEEEEECCcHHHHHHHHHHcCC
Confidence            111110    0001111111    1223333211 0011100000 01112222 111 123556677788899999998


Q ss_pred             HHHHHHHHHHHHHHh-----CCcEEEEEccCHHHHHhhCCEEE
Q psy7366         511 GARRFLWTCIERAVS-----EGRCVILTSHNMEECEALCTKLT  548 (566)
Q Consensus       511 ~~~~~l~~~l~~~~~-----~g~tvl~vsHd~~~~~~~~drv~  548 (566)
                      .+.+.+.+.|.....     ....+++++|+++++..-+++++
T Consensus       164 ~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e~~~~~l~~~i  206 (231)
T 3lnc_A          164 DDSEVVEARLKGAAFEISHCEAYDYVIVNEDIEETADRISNIL  206 (231)
T ss_dssp             --------CHHHHHHHHTTGGGSSEEEECSSHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhhcCCeEEEECcCHHHHHHHHHHHH
Confidence            888777776654321     14578888999988776655544

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=99.17  E-value=4.8e-12  Score=143.01  Aligned_cols=123  Identities=20%  Similarity=0.168  Sum_probs=86.3

Q ss_pred             CCcchHHHHHhccccCCCccCCCCCcccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCC
Q psy7366           1 MGLTTTPKRVVTLLLTTQKVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFAL   80 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl   80 (566)
                      .||||++|++.++.+..+  .|.. . ......+|+++|   ++..+++.||+..                         
T Consensus       587 sGKSTlLr~iagl~~~~~--~G~~-v-pa~~~~i~~v~~---i~~~~~~~d~l~~-------------------------  634 (765)
T 1ewq_A          587 AGKSTFLRQTALIALLAQ--VGSF-V-PAEEAHLPLFDG---IYTRIGASDDLAG-------------------------  634 (765)
T ss_dssp             SSHHHHHHHHHHHHHHHT--TTCC-B-SSSEEEECCCSE---EEEECCC-------------------------------
T ss_pred             CChHHHHHHHHhhhhhcc--cCce-e-ehhccceeeHHH---hhccCCHHHHHHh-------------------------
Confidence            599999999999875221  1111 1 112345888887   5566777776632                         


Q ss_pred             CcccccccccCChhHHHHHHHHHHH--hCCCCEEEeeCC---CCCCCHHHHH-HHHHHHHHHHhCCCEEEEecCChhHHH
Q psy7366          81 GHYSDREVRTLSGGNKRKLSTAIAL--LGNPPLIFLDEP---TSGMDPGARR-FLWTCIERAVSEGRCVILTSHNMEECE  154 (566)
Q Consensus        81 ~~~~~~~~~~LSgG~kqrl~iA~al--~~~p~vLlLDEP---t~~LD~~~~~-~l~~~l~~l~~~g~tviiisH~~~~~~  154 (566)
                               .+|+|+++++.+|+++  +.+|+++|||||   |++||+.+.. .+.+.|.+   .|.++|++||+.+.. 
T Consensus       635 ---------g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~l~-  701 (765)
T 1ewq_A          635 ---------GKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE---RRAYTLFATHYFELT-  701 (765)
T ss_dssp             ---------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH---HTCEEEEECCCHHHH-
T ss_pred             ---------cccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHHHH-
Confidence                     2688999999999999  999999999999   9999999874 57777664   588999999998765 


Q ss_pred             hhcCEEEEEeCCEEEE
Q psy7366         155 ALCTKLTIMVNGQFTC  170 (566)
Q Consensus       155 ~~~d~i~vl~~G~i~~  170 (566)
                      .+|  .-.+.++.+..
T Consensus       702 ~~~--~~~v~n~~~~~  715 (765)
T 1ewq_A          702 ALG--LPRLKNLHVAA  715 (765)
T ss_dssp             TCC--CTTEEEEEEEE
T ss_pred             Hhh--hhcceEEEEEE
Confidence            455  22344555544

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=99.14  E-value=5.2e-12  Score=144.86  Aligned_cols=90  Identities=12%  Similarity=0.083  Sum_probs=66.0

Q ss_pred             cCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHH-HHHHHHHh-CCCEEEEecCChhHHHh
Q psy7366          78 FALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW-TCIERAVS-EGRCVILTSHNMEECEA  155 (566)
Q Consensus        78 ~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~-~~l~~l~~-~g~tviiisH~~~~~~~  155 (566)
                      +|+.+...+..+++|+||+|++.|+++ +.+|+++||||||+||||.....+. .+++.+.+ .|.|||++||+++.+ +
T Consensus       723 ig~~d~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~-~  800 (918)
T 3thx_B          723 MGAADNIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVC-E  800 (918)
T ss_dssp             C----------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG-G
T ss_pred             CChHHHHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHH-H
Confidence            444445556678899999999999999 8999999999999999999888886 78888765 599999999997654 5


Q ss_pred             hcCEEEE-EeCCEEE
Q psy7366         156 LCTKLTI-MVNGQFT  169 (566)
Q Consensus       156 ~~d~i~v-l~~G~i~  169 (566)
                      +||+.-- +.++.+.
T Consensus       801 l~~~~~~~v~n~~~~  815 (918)
T 3thx_B          801 LEKNYSHQVGNYHMG  815 (918)
T ss_dssp             HHHHTTTTEEEEEEE
T ss_pred             HHhhcccceEEEEEE
Confidence            6776532 4455543

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=99.14  E-value=2.6e-12  Score=122.26  Aligned_cols=126  Identities=13%  Similarity=0.036  Sum_probs=72.0

Q ss_pred             eEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCch-HHhcCceEEEecCCCCCCCCCHHHHHHHHH
Q psy7366         366 SFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM-DLVRSYIGYCPQFDALNDRLTPREHLEFYS  444 (566)
Q Consensus       366 sl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~  444 (566)
                      |+++.+|++++|+||||||||||+++|+|+++    .+.+.+..+.... ...+..++|+||++..++.+++.+++....
T Consensus         1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (205)
T 3tr0_A            1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHA   76 (205)
T ss_dssp             ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEE
T ss_pred             CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeee
Confidence            56788999999999999999999999999974    5777776654321 223567899999876666555555433221


Q ss_pred             HhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCC
Q psy7366         445 RVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEP  504 (566)
Q Consensus       445 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEP  504 (566)
                      ...+.........+.+.++. +..-..+        +..+-+..++....++.+++++.|
T Consensus        77 ~~~~~~~~~~~~~i~~~l~~-g~~vi~d--------~~~~~~~~~~~~~~~~~~v~~~~~  127 (205)
T 3tr0_A           77 TIYERHYGTEKDWVLRQLKA-GRDVLLE--------IDWQGARQIRELFPPALSIFILPP  127 (205)
T ss_dssp             EETTEEEEEEHHHHHHHHHT-TCEEEEE--------CCHHHHHHHHHHCTTCEEEEEECS
T ss_pred             eeecccccchHHHHHHHHHc-CCeEEEE--------ECHHHHHHHHHhCCCcEEEEEECc
Confidence            11111111112233444443 1111111        233444445556667777777766

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=99.13  E-value=1.1e-11  Score=140.91  Aligned_cols=131  Identities=18%  Similarity=0.193  Sum_probs=89.6

Q ss_pred             CCcchHHHHHhccccCCCccCCCCCcccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCC
Q psy7366           1 MGLTTTPKRVVTLLLTTQKVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFAL   80 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl   80 (566)
                      .||||++|++.++.+.++.  |.. ... ....+++++|   ++..+++.|++..                         
T Consensus       618 sGKSTlLr~iagl~~~~q~--G~~-vpa-~~~~i~~~~~---i~~~~~~~d~l~~-------------------------  665 (800)
T 1wb9_A          618 GGKSTYMRQTALIALMAYI--GSY-VPA-QKVEIGPIDR---IFTRVGAADDLAS-------------------------  665 (800)
T ss_dssp             SSHHHHHHHHHHHHHHHTT--TCC-BSS-SEEEECCCCE---EEEEEC--------------------------------
T ss_pred             CChHHHHHHHHHHHHHHhc--Ccc-cch-hcccceeHHH---HHhhCCHHHHHHh-------------------------
Confidence            4999999999998765442  111 111 1235777766   4555666665532                         


Q ss_pred             CcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHH-HHHHHHHHh-CCCEEEEecCChhHHHhhcC
Q psy7366          81 GHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFL-WTCIERAVS-EGRCVILTSHNMEECEALCT  158 (566)
Q Consensus        81 ~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l-~~~l~~l~~-~g~tviiisH~~~~~~~~~d  158 (566)
                            ..+++|+++++ ++.+...+.+|+++|||||++|+|+.....+ +.+++.+.+ .|.++|++||+.+.. .+||
T Consensus       666 ------~~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~-~l~d  737 (800)
T 1wb9_A          666 ------GRSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT-QLPE  737 (800)
T ss_dssp             ----------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG-GHHH
T ss_pred             ------hhhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHH-HHhh
Confidence                  12346777765 4444556899999999999999999877775 888998877 499999999998665 5899


Q ss_pred             EEEEEeCCEEEEe
Q psy7366         159 KLTIMVNGQFTCL  171 (566)
Q Consensus       159 ~i~vl~~G~i~~~  171 (566)
                      ++..+.+|++...
T Consensus       738 ~~~~v~n~~~~~~  750 (800)
T 1wb9_A          738 KMEGVANVHLDAL  750 (800)
T ss_dssp             HSTTEEEEEEEEE
T ss_pred             hhhceEEEEEEEE
Confidence            9888888887654

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=99.10  E-value=1.7e-10  Score=123.73  Aligned_cols=180  Identities=9%  Similarity=0.053  Sum_probs=113.2

Q ss_pred             cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCcc-EEEEcCccCCCchHHhcCce-EEEecCCCCCCCCCH
Q psy7366         359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG-NAYVMNHSIRDSMDLVRSYI-GYCPQFDALNDRLTP  436 (566)
Q Consensus       359 ~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G-~i~~~g~~~~~~~~~~~~~i-~~v~q~~~l~~~~tv  436 (566)
                      ...|+++..-+++|+++.|.|++|+|||||+..+++...+..| .|.+.+.+...  ..+..++ +...       ....
T Consensus       190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~--~~l~~r~~~~~~-------~~~~  260 (454)
T 2r6a_A          190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSA--QQLVMRMLCAEG-------NINA  260 (454)
T ss_dssp             CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCH--HHHHHHHHHHHH-------TCCH
T ss_pred             cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCH--HHHHHHHHHHHc-------CCCH
Confidence            3468888878999999999999999999999999987655434 44444333221  0000000 0000       0000


Q ss_pred             HHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHc--CCCCEEEEeCCCCCCC-----
Q psy7366         437 REHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALL--GNPPLIFLDEPTSGMD-----  509 (566)
Q Consensus       437 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~--~~p~lllLDEPt~gLD-----  509 (566)
                       +.+    . .+.-......++.+.++.++..+..-.....+|.++.+  ..++.+.  .+|+++++|+++...+     
T Consensus       261 -~~l----~-~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~  332 (454)
T 2r6a_A          261 -QNL----R-TGKLTPEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSK  332 (454)
T ss_dssp             -HHH----H-TSCCCHHHHHHHHHHHHHHHSSCEEEECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC--
T ss_pred             -HHH----h-cCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCC
Confidence             001    0 11111222334555666555444433345689999987  4556665  6899999999998774     


Q ss_pred             ---HHHHHHHHHHHHHHHhC-CcEEEEEcc---------C--HH--------HHHhhCCEEEEEECCEE
Q psy7366         510 ---PGARRFLWTCIERAVSE-GRCVILTSH---------N--ME--------ECEALCTKLTIMVNGQF  555 (566)
Q Consensus       510 ---~~~~~~l~~~l~~~~~~-g~tvl~vsH---------d--~~--------~~~~~~drv~~l~~G~i  555 (566)
                         ......+.+.|+.++++ |++||+++|         |  +.        .+...||.|++|+.++.
T Consensus       333 ~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~  401 (454)
T 2r6a_A          333 ENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY  401 (454)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred             CCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence               23445677777877765 999999999         3  22        46778999999987654

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=99.09  E-value=3.9e-12  Score=131.44  Aligned_cols=80  Identities=21%  Similarity=0.348  Sum_probs=71.8

Q ss_pred             cccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHh--CCC-----EEEEecCChhHHHhhcC
Q psy7366          86 REVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS--EGR-----CVILTSHNMEECEALCT  158 (566)
Q Consensus        86 ~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~--~g~-----tviiisH~~~~~~~~~d  158 (566)
                      +.+..||+|| |++++|   +.+|++      |+||||.....+.++++++.+  .|.     ||+++|||++  +.+||
T Consensus       167 d~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d  234 (347)
T 2obl_A          167 DSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGD  234 (347)
T ss_dssp             ETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHH
T ss_pred             hhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--Chhhh
Confidence            5688999999 899999   688887      999999999999999999864  477     8999999998  67899


Q ss_pred             EEEEEeCCEEEEecChhHH
Q psy7366         159 KLTIMVNGQFTCLGSATHL  177 (566)
Q Consensus       159 ~i~vl~~G~i~~~g~~~~~  177 (566)
                      ++++|.+|+|+.+++..++
T Consensus       235 ~v~~i~dG~Ivl~~~l~~~  253 (347)
T 2obl_A          235 EVRSILDGHIVLTRELAEE  253 (347)
T ss_dssp             HHHHHCSEEEEBCHHHHTT
T ss_pred             heEEeeCcEEEEeCCHHHc
Confidence            9999999999998887765

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.08  E-value=1.1e-12  Score=133.26  Aligned_cols=135  Identities=12%  Similarity=0.112  Sum_probs=78.4

Q ss_pred             CCcchHHHHHhcc-ccCCCccCCC--CCcccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTL-LLTTQKVPGS--NPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNK   77 (566)
Q Consensus         1 ~Gktt~~k~~~~~-~~~~~~~~~~--~~~~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~   77 (566)
                      +||||+++++++. +.+...+...  ..........+++++|++.++..+|++|+..++.....  .......+..+   
T Consensus        29 ~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~--~e~~~~l~~~l---  103 (301)
T 2qnr_A           29 LGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINC--RDCFKTIISYI---  103 (301)
T ss_dssp             SSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-------------CTTHHHHH---
T ss_pred             CCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCc--HHHHHHHHHHH---
Confidence            5999999999987 6555432211  11111112458999999888778899888876432210  00001111111   


Q ss_pred             cCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCC-CCHHHHHHHHHHHHHHHhC-CCEEEEecCChh
Q psy7366          78 FALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSG-MDPGARRFLWTCIERAVSE-GRCVILTSHNME  151 (566)
Q Consensus        78 ~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~-LD~~~~~~l~~~l~~l~~~-g~tviiisH~~~  151 (566)
                         ....++++.++|||||||+.+|+|++    +|++||||++ ||+...    ++++++.+. +.++|+.+||+.
T Consensus       104 ---~~~~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~  168 (301)
T 2qnr_A          104 ---DEQFERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL  168 (301)
T ss_dssp             ---HHHHHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred             ---HHHHHHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence               22346789999999999999998886    9999999985 999874    556666443 789999999984

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=99.08  E-value=1.6e-10  Score=119.53  Aligned_cols=145  Identities=18%  Similarity=0.231  Sum_probs=85.3

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhc
Q psy7366         368 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVR  447 (566)
Q Consensus       368 ~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~  447 (566)
                      -+++|+++.|.||||+|||||+..++.......|.                  +.|+.-+..+.    .  .  + .   
T Consensus        57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~------------------vlyi~~E~~~~----~--~--~-a---  106 (349)
T 2zr9_A           57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGI------------------AAFIDAEHALD----P--E--Y-A---  106 (349)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCC------------------EEEEESSCCCC----H--H--H-H---
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCe------------------EEEEECCCCcC----H--H--H-H---
Confidence            47899999999999999999987777544322232                  44444332110    0  0  0 0   


Q ss_pred             CCCchHHHHHHHHHHHHcCCCCccccCc-CcCChhHHHHHHHHHHHcCC--CCEEEEeCCCCCC----------CH---H
Q psy7366         448 NVPSVLLNTIVNESLNKFALGHYSDREV-RTLSGGNKRKLSTAIALLGN--PPLIFLDEPTSGM----------DP---G  511 (566)
Q Consensus       448 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~LSgGqkqrv~la~al~~~--p~lllLDEPt~gL----------D~---~  511 (566)
                                     ..+++... +-.+ ...+.  .+-+.++++++.+  |+++++|||++.+          |+   .
T Consensus       107 ---------------~~lG~~~~-~l~i~~~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~  168 (349)
T 2zr9_A          107 ---------------KKLGVDTD-SLLVSQPDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGL  168 (349)
T ss_dssp             ---------------HHTTCCGG-GCEEECCSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCH
T ss_pred             ---------------HHcCCCHH-HeEEecCCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhH
Confidence                           11111100 0000 11122  2335577777654  9999999999988          33   1


Q ss_pred             HHHHHHHHHHHH----HhCCcEEEEEccCHH----------------HHHhhCCEEEEEECCEEEEecC
Q psy7366         512 ARRFLWTCIERA----VSEGRCVILTSHNME----------------ECEALCTKLTIMVNGQFTCLGS  560 (566)
Q Consensus       512 ~~~~l~~~l~~~----~~~g~tvl~vsHd~~----------------~~~~~~drv~~l~~G~i~~~g~  560 (566)
                      ..+.+.+.++++    .+.|++||+++|...                .+..+||.++.++.+++...|+
T Consensus       169 q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~  237 (349)
T 2zr9_A          169 QARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT  237 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred             HHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence            222344444444    345999999999653                2567899999998876655443

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=99.07  E-value=8.1e-11  Score=113.71  Aligned_cols=78  Identities=10%  Similarity=-0.007  Sum_probs=66.8

Q ss_pred             cCChhHHHHHHHHHHHhCCCC--EEEeeCCCCCC--CHHHHHHHHHHHHHHH-hCCCEEEEecCCh--------hHHHhh
Q psy7366          90 TLSGGNKRKLSTAIALLGNPP--LIFLDEPTSGM--DPGARRFLWTCIERAV-SEGRCVILTSHNM--------EECEAL  156 (566)
Q Consensus        90 ~LSgG~kqrl~iA~al~~~p~--vLlLDEPt~~L--D~~~~~~l~~~l~~l~-~~g~tviiisH~~--------~~~~~~  156 (566)
                      ..|.++.++...+.+...+|+  +||+||||+.+  |+..+..+.+.|++++ +.|.|||+++|+.        ..+..+
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~  182 (235)
T 2w0m_A          103 NLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHV  182 (235)
T ss_dssp             SCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHH
T ss_pred             CCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchhee
Confidence            458999988888888888999  99999999888  9999999999999985 4699999999999        558999


Q ss_pred             cCEEEEEeCCE
Q psy7366         157 CTKLTIMVNGQ  167 (566)
Q Consensus       157 ~d~i~vl~~G~  167 (566)
                      ||+|++|+...
T Consensus       183 ~d~vi~l~~~~  193 (235)
T 2w0m_A          183 ADGIIRFRRMI  193 (235)
T ss_dssp             CSEEEEEEEEE
T ss_pred             eeEEEEEEEEe
Confidence            99999998654

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=99.07  E-value=5.1e-11  Score=127.45  Aligned_cols=51  Identities=25%  Similarity=0.204  Sum_probs=48.8

Q ss_pred             ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCC
Q psy7366         360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  411 (566)
Q Consensus       360 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~  411 (566)
                      .+|+++||+|++ ++++|+|||||||||||++|+|+++|++|+|.++|+++.
T Consensus        18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~   68 (483)
T 3euj_A           18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEA   68 (483)
T ss_dssp             TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSC
T ss_pred             ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcc
Confidence            479999999999 999999999999999999999999999999999998774

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=99.06  E-value=5.6e-12  Score=139.90  Aligned_cols=148  Identities=12%  Similarity=0.135  Sum_probs=94.7

Q ss_pred             CCcchHHHHHhccccC-CC-ccCCCCCc--------ccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHH
Q psy7366           1 MGLTTTPKRVVTLLLT-TQ-KVPGSNPT--------IDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTI   70 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~-~~-~~~~~~~~--------~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~   70 (566)
                      .||||++++++|++.| +. .+.-.+..        .......|||++|++.+++.+||.+|+.+.....+...      
T Consensus        56 sGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~------  129 (608)
T 3szr_A           56 SGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEG------  129 (608)
T ss_dssp             SCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCSS------
T ss_pred             ChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCCc------
Confidence            5999999999999877 44 22211100        11234579999999999999999999987643221100      


Q ss_pred             HHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCC------CCCCCHHHHHHHHHHHHHHHh--CCCE
Q psy7366          71 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEP------TSGMDPGARRFLWTCIERAVS--EGRC  142 (566)
Q Consensus        71 ~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEP------t~~LD~~~~~~l~~~l~~l~~--~g~t  142 (566)
                             -++.              ++.+.++.+....|+++|+|||      |++||+..+..+.++++++..  .+.+
T Consensus       130 -------~~~s--------------~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~ii  188 (608)
T 3szr_A          130 -------MGIS--------------HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETIS  188 (608)
T ss_dssp             -------SCCC--------------SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCE
T ss_pred             -------cccc--------------hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCc
Confidence                   0111              1112222333458999999999      999999999999999999743  3678


Q ss_pred             EEEecCChhHH--------Hhh----cCEEEEEeCCEEEEecChh
Q psy7366         143 VILTSHNMEEC--------EAL----CTKLTIMVNGQFTCLGSAT  175 (566)
Q Consensus       143 viiisH~~~~~--------~~~----~d~i~vl~~G~i~~~g~~~  175 (566)
                      +++++|+++.+        ..+    +..|+|+.++.++..|+.+
T Consensus       189 l~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~  233 (608)
T 3szr_A          189 LVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTED  233 (608)
T ss_dssp             EEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSSSSSTT
T ss_pred             eEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhcCcccHH
Confidence            99999997622        222    3668888888877666543

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=99.06  E-value=6.3e-12  Score=135.38  Aligned_cols=173  Identities=9%  Similarity=0.037  Sum_probs=107.2

Q ss_pred             eeeEEEeCCcEEEEEcCCCCcHHHHHHHHHC--CCCCCccEEEEcCccCCCch-HHhcCceEEEecCCCCCCC--CCHHH
Q psy7366         364 QISFGVGRGECFGLLGLNGAGKTTTFKMLTG--AIKPTSGNAYVMNHSIRDSM-DLVRSYIGYCPQFDALNDR--LTPRE  438 (566)
Q Consensus       364 ~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G--~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~v~q~~~l~~~--~tv~e  438 (566)
                      .+++++.++..+.|.|++||||||+++.|..  +++++.|++.+.+.+.+... ..+ .      .-|++...  ..+.+
T Consensus       159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~-~------~lPhl~~~Vvtd~~~  231 (512)
T 2ius_A          159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVY-E------GIPHLLTEVVTDMKD  231 (512)
T ss_dssp             EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGG-T------TCTTBSSSCBCSHHH
T ss_pred             EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhh-c------cCCcccceeecCHHH
Confidence            4678889999999999999999999999876  56666687777665543210 000 0      01222110  12222


Q ss_pred             HHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccc---cCcCcCChhHHHHH----------HHHHHHcCCCC-EEEEeCC
Q psy7366         439 HLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSD---REVRTLSGGNKRKL----------STAIALLGNPP-LIFLDEP  504 (566)
Q Consensus       439 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~~~LSgGqkqrv----------~la~al~~~p~-lllLDEP  504 (566)
                      -.....    ....+.+++ .+++...|+.+..+   +....+|+||+|+.          .+++++...|. ++++||+
T Consensus       232 a~~~L~----~~~~EmerR-~~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~  306 (512)
T 2ius_A          232 AANALR----WCVNEMERR-YKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEF  306 (512)
T ss_dssp             HHHHHH----HHHHHHHHH-HHHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETH
T ss_pred             HHHHHH----HHHHHHHHH-HHHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCH
Confidence            111111    112234444 36788888875432   22356899998752          34566677887 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHh----CCcEEEEEccCHH-------HHHhhCCEEEE
Q psy7366         505 TSGMDPGARRFLWTCIERAVS----EGRCVILTSHNME-------ECEALCTKLTI  549 (566)
Q Consensus       505 t~gLD~~~~~~l~~~l~~~~~----~g~tvl~vsHd~~-------~~~~~~drv~~  549 (566)
                      +.-+|.. ...+.+.|.++++    .|.++|++||++.       ....+.+||.+
T Consensus       307 ~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~l  361 (512)
T 2ius_A          307 ADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAF  361 (512)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEE
T ss_pred             HHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEE
Confidence            9988843 3445555655532    2789999999987       44566667655

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=99.01  E-value=5.3e-11  Score=123.25  Aligned_cols=59  Identities=20%  Similarity=0.219  Sum_probs=49.6

Q ss_pred             HHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHHhhcCEEEEEeCC
Q psy7366         100 STAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNG  166 (566)
Q Consensus       100 ~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~~~d~i~vl~~G  166 (566)
                      +||+||..+|++|++||||   |++..+.+    .+++..|.+||+++|+.+.+ ..|||+++|..|
T Consensus       188 ~La~aL~~~PdvillDEp~---d~e~~~~~----~~~~~~G~~vl~t~H~~~~~-~~~dRli~l~~~  246 (356)
T 3jvv_A          188 ALRSALREDPDIILVGEMR---DLETIRLA----LTAAETGHLVFGTLHTTSAA-KTIDRVVDVFPA  246 (356)
T ss_dssp             HHHHHTTSCCSEEEESCCC---SHHHHHHH----HHHHHTTCEEEEEESCSSHH-HHHHHHHHTSCH
T ss_pred             HHHHHhhhCcCEEecCCCC---CHHHHHHH----HHHHhcCCEEEEEEccChHH-HHHHHHhhhcCc
Confidence            9999999999999999999   66664443    44456799999999999988 679999988654

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=99.01  E-value=5.7e-12  Score=118.98  Aligned_cols=144  Identities=15%  Similarity=0.053  Sum_probs=88.5

Q ss_pred             CCcchHHHHHhccccCCCccCCCC--C-cccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQKVPGSN--P-TIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNK   77 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~~~~~~--~-~~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~   77 (566)
                      +||||+++++++.+. .+.+.-.+  . ......+.+||++|+.  ...   .+++   ... .....           .
T Consensus        12 ~GKTTll~~l~g~~~-~~Gi~~~g~~~~~~~~~~~~ig~~~~~~--~g~---~~~l---~~~-~~~~~-----------~   70 (189)
T 2i3b_A           12 VGKTTLIHKASEVLK-SSGVPVDGFYTEEVRQGGRRIGFDVVTL--SGT---RGPL---SRV-GLEPP-----------P   70 (189)
T ss_dssp             SCHHHHHHHHHHHHH-HTTCCCEEEECCEEETTSSEEEEEEEET--TSC---EEEE---EEC-CCCCC-----------S
T ss_pred             ChHHHHHHHHHhhcc-cCCEEEcCEecchhHhhhceEEEEEEec--ccc---eehh---hcc-cccCC-----------c
Confidence            599999999999885 22121100  0 1112345799999985  111   0111   000 00000           0


Q ss_pred             cCCCcccccccccCChhHHHHH-HHHH---HHhCCCCEEEeeC--CCCCCCHHHHHHHHHHHHHHHhCCCEEE----Eec
Q psy7366          78 FALGHYSDREVRTLSGGNKRKL-STAI---ALLGNPPLIFLDE--PTSGMDPGARRFLWTCIERAVSEGRCVI----LTS  147 (566)
Q Consensus        78 ~gl~~~~~~~~~~LSgG~kqrl-~iA~---al~~~p~vLlLDE--Pt~~LD~~~~~~l~~~l~~l~~~g~tvi----iis  147 (566)
                      ..-.....++...+|+|||+++ ++++   |++.+|+||||||  |++.+|+...+.|.++++    ...++|    .+|
T Consensus        71 ~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~----~~~~~ilgti~vs  146 (189)
T 2i3b_A           71 GKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS----TPGTIILGTIPVP  146 (189)
T ss_dssp             SSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH----CSSCCEEEECCCC
T ss_pred             cccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh----CCCcEEEEEeecC
Confidence            0001134556778999999888 4444   6899999999999  999999988777777765    333444    345


Q ss_pred             CChhHHHhhcCEEEEEeCCEEEEe
Q psy7366         148 HNMEECEALCTKLTIMVNGQFTCL  171 (566)
Q Consensus       148 H~~~~~~~~~d~i~vl~~G~i~~~  171 (566)
                      |+.+  ..++|+|..+.+|+++..
T Consensus       147 h~~~--~~~vd~i~~~~~~~i~~~  168 (189)
T 2i3b_A          147 KGKP--LALVEEIRNRKDVKVFNV  168 (189)
T ss_dssp             CSSC--CTTHHHHHTTCCSEEEEC
T ss_pred             CCCc--hHHHHHHeecCCcEEEEe
Confidence            9984  346677777788888753

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=99.00  E-value=1.2e-09  Score=104.78  Aligned_cols=79  Identities=11%  Similarity=0.014  Sum_probs=62.0

Q ss_pred             cccCChhH--HHHHHHHHHHhCC-CCEEEeeCCCCCCCHHH--------HHHHHHHHHHHHh-CCCEEEEecCChh----
Q psy7366          88 VRTLSGGN--KRKLSTAIALLGN-PPLIFLDEPTSGMDPGA--------RRFLWTCIERAVS-EGRCVILTSHNME----  151 (566)
Q Consensus        88 ~~~LSgG~--kqrl~iA~al~~~-p~vLlLDEPt~~LD~~~--------~~~l~~~l~~l~~-~g~tviiisH~~~----  151 (566)
                      +.++|+++  +++++.+++++.+ |+++|+||||+.+|+..        ...+.+.|+++.+ .|.|||+++|...    
T Consensus        82 ~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~  161 (220)
T 2cvh_A           82 LFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRT  161 (220)
T ss_dssp             EECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTT
T ss_pred             EEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCC
Confidence            45566665  5678888899986 99999999999999843        2445555777754 4999999999876    


Q ss_pred             ---------HHHhhcCEEEEEeCC
Q psy7366         152 ---------ECEALCTKLTIMVNG  166 (566)
Q Consensus       152 ---------~~~~~~d~i~vl~~G  166 (566)
                               .+..+||+|++|+..
T Consensus       162 ~~~~p~~~~~~~~~~d~vi~l~~~  185 (220)
T 2cvh_A          162 EMTKPVAEQTLGYRCKDILRLDKL  185 (220)
T ss_dssp             SSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred             CccccCCCcceeecCcEEEEEEEe
Confidence                     678899999999865

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=98.99  E-value=1.4e-11  Score=124.98  Aligned_cols=133  Identities=13%  Similarity=0.014  Sum_probs=88.8

Q ss_pred             CCcchHHHHHhccccCCCc---cCCCCCccc---------ccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQK---VPGSNPTID---------KNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLN   68 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~---~~~~~~~~~---------~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~   68 (566)
                      +||||+++.+.+++.+...   +.+.+....         ....+|++++|++.+++.+++.+++.+... .+.+.    
T Consensus       113 sGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~~~-~~~d~----  187 (304)
T 1rj9_A          113 VGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAMKA-RGYDL----  187 (304)
T ss_dssp             SSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHHHH-HTCSE----
T ss_pred             CcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHh-CCCCE----
Confidence            5999999999999876541   222221110         012469999999998888899999976532 11110    


Q ss_pred             HHHHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEec
Q psy7366          69 TIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTS  147 (566)
Q Consensus        69 ~~~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiis  147 (566)
                          .+++..|..+..+..+.+||   +||++||||++.+|+.++|     .||+.+...+.+.++++.+. |.|+|++|
T Consensus       188 ----~llDt~G~~~~~~~~~~eLs---~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~~~~~~~t~iivT  255 (304)
T 1rj9_A          188 ----LFVDTAGRLHTKHNLMEELK---KVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKFHEAVGLTGVIVT  255 (304)
T ss_dssp             ----EEECCCCCCTTCHHHHHHHH---HHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHHHHHHCCSEEEEE
T ss_pred             ----EEecCCCCCCchHHHHHHHH---HHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHHHHHcCCcEEEEE
Confidence                12344455444445556655   8999999999999994444     45555555666666776554 89999999


Q ss_pred             CCh
Q psy7366         148 HNM  150 (566)
Q Consensus       148 H~~  150 (566)
                      |+.
T Consensus       256 h~d  258 (304)
T 1rj9_A          256 KLD  258 (304)
T ss_dssp             CTT
T ss_pred             CCc
Confidence            984

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=98.96  E-value=3e-13  Score=135.70  Aligned_cols=127  Identities=13%  Similarity=0.144  Sum_probs=87.3

Q ss_pred             cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCceEEEecCCC-CCCCCCH
Q psy7366         359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSYIGYCPQFDA-LNDRLTP  436 (566)
Q Consensus       359 ~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~i~~v~q~~~-l~~~~tv  436 (566)
                      ..+++++++++++|  ++|+||||+|||||+++|++...  .|.|.+++.++.. ......+.+++++|... ..+.+++
T Consensus        62 ~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~  137 (278)
T 1iy2_A           62 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVF  137 (278)
T ss_dssp             HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEE
T ss_pred             HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEe
Confidence            45789999999999  88999999999999999999886  7899999876521 11122334667777642 4556677


Q ss_pred             HHHHHHHHHhcCC----CchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCC
Q psy7366         437 REHLEFYSRVRNV----PSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEP  504 (566)
Q Consensus       437 ~e~l~~~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEP  504 (566)
                      .|++.........    ........+..             .+.+|||||+|++.+++|+..+|++  +|++
T Consensus       138 iDeid~l~~~~~~~~~~~~~~~~~~~~~-------------ll~~lsgg~~~~~~i~~a~t~~p~~--ld~~  194 (278)
T 1iy2_A          138 IDEIDAVGRKRGSGVGGGNDEREQTLNQ-------------LLVEMDGFEKDTAIVVMAATNRPDI--LDPA  194 (278)
T ss_dssp             EETHHHHHCC--------CHHHHHHHHH-------------HHHHHTTCCTTCCEEEEEEESCTTS--SCHH
T ss_pred             hhhhHhhhcccccccCCcchHHHHHHHH-------------HHHHHhCCCCCCCEEEEEecCCchh--CCHh
Confidence            7777443211110    11111222222             2456899999999999999999987  6766

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=98.94  E-value=2.9e-11  Score=125.16  Aligned_cols=80  Identities=15%  Similarity=0.068  Sum_probs=49.4

Q ss_pred             ChhHHHHHHHHHHHh-------CCCCEEEeeCCCCCCCHHH------------HHHHHHHHHHHHh-CCCEEEEecCChh
Q psy7366          92 SGGNKRKLSTAIALL-------GNPPLIFLDEPTSGMDPGA------------RRFLWTCIERAVS-EGRCVILTSHNME  151 (566)
Q Consensus        92 SgG~kqrl~iA~al~-------~~p~vLlLDEPt~~LD~~~------------~~~l~~~l~~l~~-~g~tviiisH~~~  151 (566)
                      |.+++|++.++++++       .+|++||+||||++||+..            ..++...|+++.+ .|.|||+++|...
T Consensus       208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~  287 (349)
T 1pzn_A          208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA  287 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred             hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc
Confidence            456677777777776       7999999999999999862            4556666666644 5999999999988


Q ss_pred             HHHhhcCEEEEEeCCEEEEe
Q psy7366         152 ECEALCTKLTIMVNGQFTCL  171 (566)
Q Consensus       152 ~~~~~~d~i~vl~~G~i~~~  171 (566)
                      ....+++.+.+...|+++..
T Consensus       288 ~~~~~~~~~~~~~~G~~l~~  307 (349)
T 1pzn_A          288 RPDAFFGDPTRPIGGHILAH  307 (349)
T ss_dssp             --------------CCCCCT
T ss_pred             ccccccCCccccCCcceEee
Confidence            76654455556666665533

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=98.93  E-value=2.7e-11  Score=117.52  Aligned_cols=74  Identities=22%  Similarity=0.228  Sum_probs=51.2

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-c-------
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-S-------  413 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~-------  413 (566)
                      .|+++|+...|+     .      +|++.+ ++++|+|||||||||||++|+|++.|++|+|.++|.++.. .       
T Consensus         9 ~l~l~~~~~~~~-----~------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~   76 (227)
T 1qhl_A            9 SLTLINWNGFFA-----R------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKG   76 (227)
T ss_dssp             EEEEEEETTEEE-----E------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------
T ss_pred             EEEEEeeecccC-----C------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccc
Confidence            477888765442     1      566667 8999999999999999999999999999999999988732 1       


Q ss_pred             -hHHhcCceEEEecC
Q psy7366         414 -MDLVRSYIGYCPQF  427 (566)
Q Consensus       414 -~~~~~~~i~~v~q~  427 (566)
                       ....+..++|++|+
T Consensus        77 ~~~~~~~~i~~v~~~   91 (227)
T 1qhl_A           77 LHGKLKAGVCYSMLD   91 (227)
T ss_dssp             CGGGBCSSEEEEEEE
T ss_pred             hhhHhhcCcEEEEEe
Confidence             11235679999974

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=98.93  E-value=7.8e-13  Score=130.65  Aligned_cols=141  Identities=13%  Similarity=0.135  Sum_probs=94.0

Q ss_pred             cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCceEEEecCCC-CCCCCCH
Q psy7366         359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSYIGYCPQFDA-LNDRLTP  436 (566)
Q Consensus       359 ~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~i~~v~q~~~-l~~~~tv  436 (566)
                      ..+++++++++++|  ++|+||||+|||||+++|++...  .|.|.+++.++.. ......+.+++++|... ..+.+++
T Consensus        38 ~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~  113 (254)
T 1ixz_A           38 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVF  113 (254)
T ss_dssp             HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEE
T ss_pred             HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEE
Confidence            45788999999999  88999999999999999999876  7899999876521 11112234667777642 4555677


Q ss_pred             HHHHHHHHHhcCC----CchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCC------
Q psy7366         437 REHLEFYSRVRNV----PSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTS------  506 (566)
Q Consensus       437 ~e~l~~~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~------  506 (566)
                      .|++.........    ......+.+.++             +..|||||+||+.+++|+..+|++  +|++..      
T Consensus       114 ~Deid~l~~~~~~~~~~~~~~~~~~~~~l-------------l~~l~g~~~~~~~i~~a~t~~p~~--ld~~l~r~~rf~  178 (254)
T 1ixz_A          114 IDEIDAVGRKRGSGVGGGNDEREQTLNQL-------------LVEMDGFEKDTAIVVMAATNRPDI--LDPALLRPGRFD  178 (254)
T ss_dssp             EETHHHHHC---------CHHHHHHHHHH-------------HHHHHTCCTTCCEEEEEEESCGGG--SCGGGGSTTSSC
T ss_pred             ehhhhhhhcccCccccccchHHHHHHHHH-------------HHHHhCCCCCCCEEEEEccCCchh--CCHHHcCCCcCC
Confidence            7777433211110    111112222222             346899999999999999999987  677653      


Q ss_pred             ------CCCHHHHHHHHH
Q psy7366         507 ------GMDPGARRFLWT  518 (566)
Q Consensus       507 ------gLD~~~~~~l~~  518 (566)
                            -.|...+..+++
T Consensus       179 ~~i~i~~p~~~~r~~il~  196 (254)
T 1ixz_A          179 RQIAIDAPDVKGREQILR  196 (254)
T ss_dssp             EEEECCSCCHHHHHHHHH
T ss_pred             eEEeeCCcCHHHHHHHHH
Confidence                  235666666554

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=98.91  E-value=2.1e-10  Score=113.82  Aligned_cols=60  Identities=18%  Similarity=0.173  Sum_probs=51.1

Q ss_pred             HHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHHhhcCEEEEEeC
Q psy7366          98 KLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVN  165 (566)
Q Consensus        98 rl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~~~d~i~vl~~  165 (566)
                      +++||+||..+|++|+|||||   |+.+...+   ++. ...|.+|++++|+.+ +...|||+++|..
T Consensus        88 ~~~la~aL~~~p~illlDEp~---D~~~~~~~---l~~-~~~g~~vl~t~H~~~-~~~~~dri~~l~~  147 (261)
T 2eyu_A           88 ADALRAALREDPDVIFVGEMR---DLETVETA---LRA-AETGHLVFGTLHTNT-AIDTIHRIVDIFP  147 (261)
T ss_dssp             HHHHHHHHHHCCSEEEESCCC---SHHHHHHH---HHH-HHTTCEEEEEECCSS-HHHHHHHHHHTSC
T ss_pred             HHHHHHHHhhCCCEEEeCCCC---CHHHHHHH---HHH-HccCCEEEEEeCcch-HHHHHHHHhhhcC
Confidence            899999999999999999999   99886654   443 356999999999987 6678999988854

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=98.88  E-value=2.9e-11  Score=134.34  Aligned_cols=158  Identities=12%  Similarity=0.101  Sum_probs=101.0

Q ss_pred             CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCc-cEEEEcCccCCCchHHhcCceEEEecCCC-------
Q psy7366         358 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS-GNAYVMNHSIRDSMDLVRSYIGYCPQFDA-------  429 (566)
Q Consensus       358 ~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~-G~i~~~g~~~~~~~~~~~~~i~~v~q~~~-------  429 (566)
                      ...+++++++.+.+|+.++|+||||+|||||+++|+++.++.. |.+.+.+.+...    ....++|+|+...       
T Consensus        46 ~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~----~~p~i~~~p~g~~~~~~e~~  121 (604)
T 3k1j_A           46 QEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDE----NMPRIKTVPACQGRRIVEKY  121 (604)
T ss_dssp             CHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCT----TSCEEEEEETTHHHHHHHHH
T ss_pred             chhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccc----cCCcEEEEecchHHHHHHHH
Confidence            5668899999999999999999999999999999999999887 788888876542    2335888876431       


Q ss_pred             ---------------CCCCCCHHHHHHHHHH-hcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHc
Q psy7366         430 ---------------LNDRLTPREHLEFYSR-VRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALL  493 (566)
Q Consensus       430 ---------------l~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~  493 (566)
                                     .+..+++.+|+..... ..+.+-..  .......+.+|.-+........+|+|++|++..++...
T Consensus       122 ~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~--~~~~~~~~L~G~~~~~~~~~g~~~~g~~~~i~~g~~~~  199 (604)
T 3k1j_A          122 REKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFID--ATGAHAGALLGDVRHDPFQSGGLGTPAHERVEPGMIHR  199 (604)
T ss_dssp             HHHHHHHTCC-----------CCCEEEECCTTCSSCCEEE--CTTCCHHHHHCEECCCCC----CCCCGGGGEECCHHHH
T ss_pred             HHhhccchhhhhhcccccccccccceeeccccCCCCCEEE--cCCCCHHhcCceEEechhhcCCccccccccccCceeee
Confidence                           0111111111100000 00000000  00001112222211112233679999999999999999


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy7366         494 GNPPLIFLDEPTSGMDPGARRFLWTCIER  522 (566)
Q Consensus       494 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~  522 (566)
                      .++.+|+|||... |++..+..+.+.|.+
T Consensus       200 a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~  227 (604)
T 3k1j_A          200 AHKGVLFIDEIAT-LSLKMQQSLLTAMQE  227 (604)
T ss_dssp             TTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred             cCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence            9999999999988 899999999888875

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=98.82  E-value=1.4e-10  Score=109.18  Aligned_cols=36  Identities=22%  Similarity=0.230  Sum_probs=32.7

Q ss_pred             HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy7366         485 KLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER  522 (566)
Q Consensus       485 rv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~  522 (566)
                      .+.+|++++.+|+++++|  ||++|..+..++++.|.+
T Consensus       153 ~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~  188 (191)
T 1oix_A          153 PTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT  188 (191)
T ss_dssp             CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence            467899999999999999  999999999999988865

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=98.80  E-value=3.8e-13  Score=126.71  Aligned_cols=160  Identities=18%  Similarity=0.126  Sum_probs=98.5

Q ss_pred             CCcchHHHHHhccccCCC-ccCCCCCcccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHHHcC
Q psy7366           1 MGLTTTPKRVVTLLLTTQ-KVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFA   79 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~-~~~~~~~~~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g   79 (566)
                      .||||++|.+.+-. .|. .+.+..   ......+|+++|....+...++.+++.+..........      ..+++.+.
T Consensus        13 aGKSTl~~~L~~~~-~g~~~i~~d~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~------~~ild~~~   82 (189)
T 2bdt_A           13 VGKSTTCKRLAAQL-DNSAYIEGDI---INHMVVGGYRPPWESDELLALTWKNITDLTVNFLLAQN------DVVLDYIA   82 (189)
T ss_dssp             SSHHHHHHHHHHHS-SSEEEEEHHH---HHTTCCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTTC------EEEEESCC
T ss_pred             CcHHHHHHHHhccc-CCeEEEcccc---hhhhhccccccCccchhHHHHHHHHHHHHHHHHHhcCC------cEEEeecc
Confidence            59999999998722 222 111100   01112467788766444556788887665332100000      00111110


Q ss_pred             CCcccccccccC--ChhHHHHHHHHH------HHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCC-h
Q psy7366          80 LGHYSDREVRTL--SGGNKRKLSTAI------ALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN-M  150 (566)
Q Consensus        80 l~~~~~~~~~~L--SgG~kqrl~iA~------al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~-~  150 (566)
                       .....+.+.++  |+|++|++.++.      ++..+|+...+|+   +||+..+.. ++.+..+.+.+.+||.+||. +
T Consensus        83 -~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~~~~~ii~tsh~~~  157 (189)
T 2bdt_A           83 -FPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGIDERYFYNTSHLQP  157 (189)
T ss_dssp             -CHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTCCTTSEEECSSSCG
T ss_pred             -CHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCCCccEEEeCCCCCh
Confidence             11111223345  899999988888      8999999888884   899999988 88888876668899999999 9


Q ss_pred             hHHHhhcCEEEEEeCCEEEEecChhHH
Q psy7366         151 EECEALCTKLTIMVNGQFTCLGSATHL  177 (566)
Q Consensus       151 ~~~~~~~d~i~vl~~G~i~~~g~~~~~  177 (566)
                      ++++++||+|+  ++|+++..|+++-+
T Consensus       158 ~~~e~~~~~i~--~~g~~~~~~~~~~~  182 (189)
T 2bdt_A          158 TNLNDIVKNLK--TNPRFIFCMAGDPL  182 (189)
T ss_dssp             GGHHHHHHHHH--HCGGGSCC------
T ss_pred             hhHHHHHHHHh--hCCcEEEeecCCch
Confidence            99999999998  99999988877644

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.78  E-value=3.4e-10  Score=119.46  Aligned_cols=132  Identities=14%  Similarity=0.104  Sum_probs=75.3

Q ss_pred             CCcchHHHHHhccccCCCccCCCCC--cccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHHHc
Q psy7366           1 MGLTTTPKRVVTLLLTTQKVPGSNP--TIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKF   78 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~~~~~~~--~~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~   78 (566)
                      +||||+++++++...+.....+...  ........+++++|++.++..+||+|++.+......   ...+..+.+.++  
T Consensus        42 aGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~---~~~~~~i~~~i~--  116 (418)
T 2qag_C           42 LGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDN---SNCWQPVIDYID--  116 (418)
T ss_dssp             SSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC--------------CHHHHHHHH--
T ss_pred             CcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccc---hhhHHHHHHHHH--
Confidence            5999999999998873221111100  001112458999999988888999999877543211   111122222222  


Q ss_pred             CCCcccccccccCChhHHHHHHHHHHHhCCCC---EEEeeCCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhH
Q psy7366          79 ALGHYSDREVRTLSGGNKRKLSTAIALLGNPP---LIFLDEPT-SGMDPGARRFLWTCIERAVSEGRCVILTSHNMEE  152 (566)
Q Consensus        79 gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~---vLlLDEPt-~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~  152 (566)
                                ..++.+++|+++||++++.+|+   +|++|||| ++||+....+    ++.+. .+..||+|.|..+.
T Consensus       117 ----------~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~----lk~L~-~~v~iIlVinK~Dl  179 (418)
T 2qag_C          117 ----------SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEF----MKRLH-EKVNIIPLIAKADT  179 (418)
T ss_dssp             ----------HHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHH----HHHHT-TTSEEEEEEESTTS
T ss_pred             ----------HHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHH----HHHHh-ccCcEEEEEEcccC
Confidence                      1355677889999999999999   99999999 6999988544    45553 47888888887543

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=98.77  E-value=7.6e-09  Score=106.77  Aligned_cols=147  Identities=16%  Similarity=0.124  Sum_probs=85.1

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEE-EEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHHHHHh
Q psy7366         368 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA-YVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRV  446 (566)
Q Consensus       368 ~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i-~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~  446 (566)
                      -+++|+++.|.||||||||||+..+++...+..|.| +++++......  +.+++|+.+|+..+....++.+.+...   
T Consensus        57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~--ra~rlgv~~~~l~i~~~~~~e~~l~~~---  131 (356)
T 3hr8_A           57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPV--YAKNLGVDLKSLLISQPDHGEQALEIV---  131 (356)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH--HHHHHTCCGGGCEEECCSSHHHHHHHH---
T ss_pred             CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchH--HHHHcCCchhhhhhhhccCHHHHHHHH---
Confidence            378999999999999999999999998877766765 55555433221  223456555554433334554433221   


Q ss_pred             cCCCchHHHHHHHHHHHHcCC-----CCccccCc-CcCCh--hHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHH
Q psy7366         447 RNVPSVLLNTIVNESLNKFAL-----GHYSDREV-RTLSG--GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT  518 (566)
Q Consensus       447 ~~~~~~~~~~~~~~~l~~~~l-----~~~~~~~~-~~LSg--Gqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~  518 (566)
                                  ..++.....     +......+ .+++|  |++|++..||++.                     .++.
T Consensus       132 ------------~~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la---------------------~~L~  178 (356)
T 3hr8_A          132 ------------DELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMS---------------------QALR  178 (356)
T ss_dssp             ------------HHHHHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHH---------------------HHHH
T ss_pred             ------------HHHhhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHH---------------------HHHH
Confidence                        111111110     11111111 22322  4444444444443                     4555


Q ss_pred             HHHHHHhC-CcEEEEEccCH----------------HHHHhhCCEEEEEEC
Q psy7366         519 CIERAVSE-GRCVILTSHNM----------------EECEALCTKLTIMVN  552 (566)
Q Consensus       519 ~l~~~~~~-g~tvl~vsHd~----------------~~~~~~~drv~~l~~  552 (566)
                      .|..++++ +.+||++.|-.                .-+..++|.++.|..
T Consensus       179 ~L~~lak~~~~tVI~inqv~~k~g~~fg~p~~~~GG~~l~h~~~~rl~l~k  229 (356)
T 3hr8_A          179 KIAGSVNKSKAVVIFTNQIRMKIGVMFGSPETTTGGLALKFYATMRMEVRR  229 (356)
T ss_dssp             HHHHHHHTSSCEEEEEEESSSCSSSSSCSCSSCTHHHHHHHHCSEEEEEEE
T ss_pred             HHHHHHHhcCCEEEEEeeeeeccccccCCcccCCCcchhhhhCcEEEEEEe
Confidence            66666655 89999998872                225678899998875

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=98.73  E-value=1.9e-10  Score=111.05  Aligned_cols=125  Identities=13%  Similarity=0.119  Sum_probs=79.7

Q ss_pred             CCcchHHHHHhccccCC----C-ccCCCCCcccccccceeEEcCCCCCCCCCCH----HHHHHHHHHhcCCChhhHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTT----Q-KVPGSNPTIDKNLSYIGYCPQFDALNDRLTP----REHLEFYSRVRNVPSVLLNTIV   71 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~----~-~~~~~~~~~~~~~~~ig~v~Q~~~l~~~~tv----~e~l~~~~~~~~~~~~~~~~~~   71 (566)
                      +||||++|++++.+.++    . .+++..+.. ....+++|+||++.+|+.+++    .|++.+....++.+        
T Consensus        27 sGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~-~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~~~yg~~--------   97 (219)
T 1s96_A           27 AGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP-GEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYYGTS--------   97 (219)
T ss_dssp             SCHHHHHHHHHHHSCTTTEEECCCEECSCCCT-TCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEE--------
T ss_pred             CCHHHHHHHHhccCCCCceEEEEEecCCCCCc-ccccCceEEECCHHHHHHHHhcCHHHHHHHHHhccCCCC--------
Confidence            59999999999988542    1 122222211 123469999998765544444    22222111111111        


Q ss_pred             HHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChh
Q psy7366          72 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME  151 (566)
Q Consensus        72 ~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~  151 (566)
                                              ++.   +..++..++++|||     ||+.++..+++.+.    +|.||+++||+++
T Consensus        98 ------------------------~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~----~~~tI~i~th~~~  141 (219)
T 1s96_A           98 ------------------------REA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP----HARSIFILPPSKI  141 (219)
T ss_dssp             ------------------------HHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT----TCEEEEEECSSHH
T ss_pred             ------------------------HHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc----CCEEEEEECCCHH
Confidence                                    111   23334457999999     99999999998875    5899999999999


Q ss_pred             HHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy7366         152 ECEALCTKLTIMVNGQFTCLGSATHLKS  179 (566)
Q Consensus       152 ~~~~~~d~i~vl~~G~i~~~g~~~~~~~  179 (566)
                      ++..   |+  +.+|    .++++++..
T Consensus       142 ~l~~---Rl--~~rG----~~~~e~i~~  160 (219)
T 1s96_A          142 ELDR---RL--RGRG----QDSEEVIAK  160 (219)
T ss_dssp             HHHH---HH--HTTS----CSCHHHHHH
T ss_pred             HHHH---HH--HHcC----CCCHHHHHH
Confidence            9876   43  6667    567777654

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=98.70  E-value=7.3e-10  Score=105.24  Aligned_cols=73  Identities=12%  Similarity=0.070  Sum_probs=51.6

Q ss_pred             eEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHH
Q psy7366         366 SFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEF  442 (566)
Q Consensus       366 sl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~  442 (566)
                      .++.++|++++|+||||||||||+++|+|.+    |.+.+++.++.......+..+++++|++..++.+++.+++..
T Consensus        23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~   95 (200)
T 4eun_A           23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEWMD   95 (200)
T ss_dssp             -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHHHH
Confidence            3566899999999999999999999999976    899999988754322223346788887655555566666543

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.65  E-value=2.8e-09  Score=112.17  Aligned_cols=144  Identities=15%  Similarity=0.134  Sum_probs=94.1

Q ss_pred             CCcchHHHHHhccccCCCccCCCCCcccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcC-CCh----hhHHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQKVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRN-VPS----VLLNTIVNESL   75 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~-~~~----~~~~~~~~~~l   75 (566)
                      .||||++|+++|..+.|..+....+.  .....++|++|++.+++.+||.|++.|+..... ...    ..+..+..+++
T Consensus        53 aGKSTLln~L~G~~l~g~~~~~~~~~--~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L  130 (427)
T 2qag_B           53 LGKSTLMDTLFNTKFEGEPATHTQPG--VQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYL  130 (427)
T ss_dssp             SSSHHHHHHHHTSCC-------CCSS--CEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHhCccccCCcCCCCCcc--ceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHH
Confidence            59999999999998877654332221  123469999999988888999998866432110 001    12345566666


Q ss_pred             HHc-CCCc----ccccc----c-------ccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHH-HHh
Q psy7366          76 NKF-ALGH----YSDRE----V-------RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER-AVS  138 (566)
Q Consensus        76 ~~~-gl~~----~~~~~----~-------~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~-l~~  138 (566)
                      ... ++..    ..+..    +       ..|+...   +.|+++|..++.|+++|||+..|.+.....+.+.+++ +..
T Consensus       131 ~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~  207 (427)
T 2qag_B          131 QEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVS  207 (427)
T ss_dssp             HHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBT
T ss_pred             HHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHH
Confidence            665 5431    12222    1       2455555   7999999999999999999999999999999999997 877


Q ss_pred             CCCEEEEecCC
Q psy7366         139 EGRCVILTSHN  149 (566)
Q Consensus       139 ~g~tviiisH~  149 (566)
                      .|..|+++|.+
T Consensus       208 ~gi~I~~is~~  218 (427)
T 2qag_B          208 NGVQIYQFPTD  218 (427)
T ss_dssp             TBCCCCCCC--
T ss_pred             cCCcEEecCCC
Confidence            89999999964

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=98.63  E-value=5.9e-10  Score=105.42  Aligned_cols=36  Identities=22%  Similarity=0.216  Sum_probs=31.5

Q ss_pred             HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy7366         486 LSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERA  523 (566)
Q Consensus       486 v~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~  523 (566)
                      ...|++++.+|+++++|  ||++|......+++.|.+.
T Consensus       130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~  165 (199)
T 2f9l_A          130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTE  165 (199)
T ss_dssp             HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHH
Confidence            35588999999999999  9999999999999888664

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=98.62  E-value=3.6e-09  Score=109.94  Aligned_cols=139  Identities=18%  Similarity=0.164  Sum_probs=84.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCCC-----------CCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHH---
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAIK-----------PTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREH---  439 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~~-----------~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~---  439 (566)
                      +++|+|++|||||||++.|+|...           |..|.|.++|.++.-     ....|++.+.+.    ..+...   
T Consensus       181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l-----~DT~G~i~~lp~----~lve~f~~t  251 (364)
T 2qtf_A          181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIML-----VDTVGFIRGIPP----QIVDAFFVT  251 (364)
T ss_dssp             EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEE-----EECCCBCSSCCG----GGHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEE-----EeCCCchhcCCH----HHHHHHHHH
Confidence            489999999999999999999876           567888888754310     112333333221    111110   


Q ss_pred             HHHHHH------hcCCCc-h----HHHHHHHHHHHHcCCCCcc----ccCcCcCChhHHHHHHHH----HHH-cCCCCEE
Q psy7366         440 LEFYSR------VRNVPS-V----LLNTIVNESLNKFALGHYS----DREVRTLSGGNKRKLSTA----IAL-LGNPPLI  499 (566)
Q Consensus       440 l~~~~~------~~~~~~-~----~~~~~~~~~l~~~~l~~~~----~~~~~~LSgGqkqrv~la----~al-~~~p~ll  499 (566)
                      +.....      ...... .    .....+.++++.+++.+..    ..++..+|+|+++++.++    +++ ..+|++ 
T Consensus       252 l~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~-  330 (364)
T 2qtf_A          252 LSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV-  330 (364)
T ss_dssp             HHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE-
T ss_pred             HHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE-
Confidence            110000      001111 1    1122345677777765432    456788999988888877    665 444454 


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy7366         500 FLDEPTSGMDPGARRFLWTCIERAVS  525 (566)
Q Consensus       500 lLDEPt~gLD~~~~~~l~~~l~~~~~  525 (566)
                         +|+|++|......+++.|.++..
T Consensus       331 ---~~~SA~~g~gi~~L~~~I~~~l~  353 (364)
T 2qtf_A          331 ---IPISALKRTNLELLRDKIYQLAT  353 (364)
T ss_dssp             ---EECBTTTTBSHHHHHHHHHHHHH
T ss_pred             ---EEEECCCCcCHHHHHHHHHHHhc
Confidence               89999999999999999887643

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=98.56  E-value=1.5e-10  Score=120.63  Aligned_cols=136  Identities=13%  Similarity=0.082  Sum_probs=82.9

Q ss_pred             cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCC-CCCCCCHH
Q psy7366         359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDA-LNDRLTPR  437 (566)
Q Consensus       359 ~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~-l~~~~tv~  437 (566)
                      ..+++++++.+++|++++|+||||||||||+++|+|.   ..|.+.....+-..    ....++++||... ++.+.+..
T Consensus       156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~~~~~~----~~~~lg~~~q~~~~l~dd~~~~  228 (377)
T 1svm_A          156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVNLPLDR----LNFELGVAIDQFLVVFEDVKGT  228 (377)
T ss_dssp             HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCSSCTTT----HHHHHGGGTTCSCEEETTCCCS
T ss_pred             HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEeccchh----HHHHHHHhcchhHHHHHHHHHH
Confidence            3589999999999999999999999999999999985   36777652211111    1112556666543 22222221


Q ss_pred             HHHHHHHHhcCCCc-hH--HHHHHHHHHH---------------HcCCC-CccccCcCcCChhHHHHHHHHHHHcCCCCE
Q psy7366         438 EHLEFYSRVRNVPS-VL--LNTIVNESLN---------------KFALG-HYSDREVRTLSGGNKRKLSTAIALLGNPPL  498 (566)
Q Consensus       438 e~l~~~~~~~~~~~-~~--~~~~~~~~l~---------------~~~l~-~~~~~~~~~LSgGqkqrv~la~al~~~p~l  498 (566)
                      .++     .+.... ..  ....+...++               ..-+. ...+.....+++|+++|+..+.+++..|++
T Consensus       229 ~~~-----~r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDL  303 (377)
T 1svm_A          229 GGE-----SRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYL  303 (377)
T ss_dssp             TTT-----TTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHH
T ss_pred             HHH-----HhhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCe
Confidence            110     000000 00  0111223332               01111 234567788999999999988888888988


Q ss_pred             EE-EeCCCC
Q psy7366         499 IF-LDEPTS  506 (566)
Q Consensus       499 ll-LDEPt~  506 (566)
                      ++ ||+|+.
T Consensus       304 liyLd~~~~  312 (377)
T 1svm_A          304 KHCLERSEF  312 (377)
T ss_dssp             HHHHHTCTH
T ss_pred             EEEEeCCHH
Confidence            88 888876

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=98.53  E-value=1.9e-10  Score=112.91  Aligned_cols=130  Identities=12%  Similarity=0.056  Sum_probs=85.1

Q ss_pred             CCcchHHHHHh---ccccCCC-cc--CCCCCcccccccceeEEcCCCCCCCCCCHHHHHHHHHH--------hcCCChhh
Q psy7366           1 MGLTTTPKRVV---TLLLTTQ-KV--PGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSR--------VRNVPSVL   66 (566)
Q Consensus         1 ~Gktt~~k~~~---~~~~~~~-~~--~~~~~~~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~--------~~~~~~~~   66 (566)
                      +||||++|++.   |+..+.. .+  .+.. ........+.+++|++.+++..++.+++.....        ..+.+...
T Consensus        38 sGKSTl~k~La~~lg~~~~~~G~i~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~~~~~il~g~~~~~  116 (246)
T 2bbw_A           38 SGKGTVCQRIAQNFGLQHLSSGHFLRENIK-ASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRRGQHWLLDGFPRTL  116 (246)
T ss_dssp             SSHHHHHHHHHHHHCCCCEEHHHHHHHHHH-TTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCTTSCEEEESCCCSH
T ss_pred             CCHHHHHHHHHHHhCCeEecHHHHHHHHHh-cCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCCCH
Confidence            59999999999   7765432 00  0000 000112235667888888888899999976432        12332221


Q ss_pred             HHHHHHHHHH--HcC------------CCcccccccccCChhHHHHHHHHHHH-hCCCCEEEee----CCCCCCCHHHHH
Q psy7366          67 LNTIVNESLN--KFA------------LGHYSDREVRTLSGGNKRKLSTAIAL-LGNPPLIFLD----EPTSGMDPGARR  127 (566)
Q Consensus        67 ~~~~~~~~l~--~~g------------l~~~~~~~~~~LSgG~kqrl~iA~al-~~~p~vLlLD----EPt~~LD~~~~~  127 (566)
                        .+++.+..  .++            +....++.+.+|||    |+   +|+ +.+|++++||    |||++||+.+++
T Consensus       117 --~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~  187 (246)
T 2bbw_A          117 --GQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPE  187 (246)
T ss_dssp             --HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHH
T ss_pred             --HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCcccccccccccccccCCCCcHH
Confidence              22333322  222            22234788899999    55   677 8999999999    999999999999


Q ss_pred             HHHHHHHHHHhCC
Q psy7366         128 FLWTCIERAVSEG  140 (566)
Q Consensus       128 ~l~~~l~~l~~~g  140 (566)
                      .+.+.|+.+.+++
T Consensus       188 ~i~~~l~~~~~~~  200 (246)
T 2bbw_A          188 AVAARLRQYKDVA  200 (246)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhH
Confidence            9999999886653

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=98.52  E-value=8e-08  Score=109.38  Aligned_cols=76  Identities=12%  Similarity=0.110  Sum_probs=61.3

Q ss_pred             ccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCcEEEE-EccCHHHHHhhCCEE
Q psy7366         472 DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTS-GMDPGARRFLWTCIERAVSEGRCVIL-TSHNMEECEALCTKL  547 (566)
Q Consensus       472 ~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~-gLD~~~~~~l~~~l~~~~~~g~tvl~-vsHd~~~~~~~~drv  547 (566)
                      +..+.-+|.|+.+|..++..++.+++++|+|||.. +||......+++.+........+|++ +||+.+.+..+++..
T Consensus       185 ~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~~  262 (773)
T 2xau_A          185 KTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDA  262 (773)
T ss_dssp             TCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTTSC
T ss_pred             CCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhcCC
Confidence            45677899999999999999999999999999996 99988776666666554444567777 499998888887643

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=98.50  E-value=2.8e-08  Score=101.31  Aligned_cols=81  Identities=15%  Similarity=0.134  Sum_probs=63.1

Q ss_pred             eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCch-----HHh-----cCceEEE-ecCCCC
Q psy7366         362 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM-----DLV-----RSYIGYC-PQFDAL  430 (566)
Q Consensus       362 l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~-----~~~-----~~~i~~v-~q~~~l  430 (566)
                      +++++|++.+|++++|+|+||+||||++..|++.+.+..|+|.+.+.++....     ..+     +..+.++ +|....
T Consensus        95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~  174 (320)
T 1zu4_A           95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNA  174 (320)
T ss_dssp             -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTC
T ss_pred             ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCC
Confidence            46889999999999999999999999999999999999999999988875432     222     5679999 666555


Q ss_pred             CCCCCHHHHHHH
Q psy7366         431 NDRLTPREHLEF  442 (566)
Q Consensus       431 ~~~~tv~e~l~~  442 (566)
                      .+..++.+++..
T Consensus       175 ~p~~~~~~~l~~  186 (320)
T 1zu4_A          175 DPASVVFDAIKK  186 (320)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
Confidence            544455555543

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=98.49  E-value=2e-08  Score=95.43  Aligned_cols=127  Identities=17%  Similarity=0.230  Sum_probs=76.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchH
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVL  453 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~  453 (566)
                      +++|+|+|||||||+.++|+++     |...+++..+.      +. +.   +     +.                 .  
T Consensus         4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~d~~~------~~-~~---~-----~~-----------------~--   44 (206)
T 1jjv_A            4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDADVVA------RE-VV---A-----KD-----------------S--   44 (206)
T ss_dssp             EEEEECSTTSCHHHHHHHHHTT-----TCCEEEHHHHH------HH-TT---C-----SS-----------------C--
T ss_pred             EEEEECCCCCCHHHHHHHHHHC-----CCcccchHHHH------HH-Hc---c-----CC-----------------h--
Confidence            6899999999999999999983     54455442210      00 00   0     00                 0  


Q ss_pred             HHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEE
Q psy7366         454 LNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILT  533 (566)
Q Consensus       454 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~v  533 (566)
                        ....++.+.+|...+       .|.|+.+|..++..+..+|+.+..+  .+.++|..+..+.+.+...  .+.++|+.
T Consensus        45 --~~~~~i~~~~g~~~~-------~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~  111 (206)
T 1jjv_A           45 --PLLSKIVEHFGAQIL-------TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFV  111 (206)
T ss_dssp             --HHHHHHHHHHCTTCC-------------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEE
T ss_pred             --HHHHHHHHHhCHHHh-------ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEE
Confidence              112344555554321       3678888888888888877644333  3456677666666555432  25688899


Q ss_pred             ccCHHHH--HhhCCEEEEEEC
Q psy7366         534 SHNMEEC--EALCTKLTIMVN  552 (566)
Q Consensus       534 sHd~~~~--~~~~drv~~l~~  552 (566)
                      +|.+.+.  ...||++++++-
T Consensus       112 ~~~l~e~~~~~~~d~vi~l~~  132 (206)
T 1jjv_A          112 VPLLIENKLTALCDRILVVDV  132 (206)
T ss_dssp             CTTTTTTTCGGGCSEEEEEEC
T ss_pred             echhhhcCcHhhCCEEEEEEC
Confidence            9988775  678999998853

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=98.48  E-value=2e-07  Score=99.97  Aligned_cols=61  Identities=20%  Similarity=0.186  Sum_probs=45.4

Q ss_pred             hhHHHHHHHHHHHcCCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHHH----hCCcEEEEEccCHHHH
Q psy7366         480 GGNKRKLSTAIALLGNPPLIFLDEP----------TSGMDPGARRFLWTCIERAV----SEGRCVILTSHNMEEC  540 (566)
Q Consensus       480 gGqkqrv~la~al~~~p~lllLDEP----------t~gLD~~~~~~l~~~l~~~~----~~g~tvl~vsHd~~~~  540 (566)
                      +++++|..+++|....|.+|++||+          +.|.|....+.+.+++..+-    ..+..||.+||..+.+
T Consensus        93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L  167 (476)
T 2ce7_A           93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL  167 (476)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred             cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence            5678888899999999999999999          44777777777777777663    2477899999998654

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=98.47  E-value=5.5e-09  Score=114.04  Aligned_cols=43  Identities=23%  Similarity=0.290  Sum_probs=38.5

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCcc-EEE-EcCccC
Q psy7366         368 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG-NAY-VMNHSI  410 (566)
Q Consensus       368 ~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G-~i~-~~g~~~  410 (566)
                      .+.+|++++|+|+||||||||+++|+|.+.|++| +|. ++|.++
T Consensus       365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~  409 (552)
T 3cr8_A          365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV  409 (552)
T ss_dssp             GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred             ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence            5789999999999999999999999999999887 785 888654

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=98.47  E-value=8.6e-08  Score=99.40  Aligned_cols=125  Identities=15%  Similarity=0.140  Sum_probs=80.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCC
Q psy7366         371 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVP  450 (566)
Q Consensus       371 ~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~  450 (566)
                      ..-.++|+|+||+|||||++.++|... .     ..+.+....    ...++.++++..                     
T Consensus       166 ~~~~v~lvG~~gvGKSTLin~L~~~~~-~-----~~~~~~~t~----~~~~~~~~~~~~---------------------  214 (357)
T 2e87_A          166 EIPTVVIAGHPNVGKSTLLKALTTAKP-E-----IASYPFTTR----GINVGQFEDGYF---------------------  214 (357)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHCSSCC-E-----EECCTTCSS----CEEEEEEEETTE---------------------
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC-c-----cCCCCCeee----ceeEEEEEecCc---------------------
Confidence            344789999999999999999998652 1     222221110    012333333210                     


Q ss_pred             chHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCcE
Q psy7366         451 SVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLD-EPTSGMDPGARRFLWTCIERAVSEGRC  529 (566)
Q Consensus       451 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLD-EPt~gLD~~~~~~l~~~l~~~~~~g~t  529 (566)
                                .+..++.....+.++..+|+|++|.+. +.+...++-++++| +|.+++|......+++.+..... +..
T Consensus       215 ----------~~~l~Dt~G~~~~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~p  282 (357)
T 2e87_A          215 ----------RYQIIDTPGLLDRPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLP  282 (357)
T ss_dssp             ----------EEEEEECTTTSSSCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSC
T ss_pred             ----------eEEEEeCCCccccchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCC
Confidence                      001111122234567789999998776 55555677889999 99999999998888777766543 678


Q ss_pred             EEEEc--cCHH
Q psy7366         530 VILTS--HNME  538 (566)
Q Consensus       530 vl~vs--Hd~~  538 (566)
                      +|++.  ||+.
T Consensus       283 iilV~NK~Dl~  293 (357)
T 2e87_A          283 FLVVINKIDVA  293 (357)
T ss_dssp             EEEEECCTTTC
T ss_pred             EEEEEECcccC
Confidence            88888  8874

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=98.47  E-value=9.1e-07  Score=85.70  Aligned_cols=60  Identities=15%  Similarity=0.201  Sum_probs=40.7

Q ss_pred             CCCCEEEeeCCCCCCCHH-------H-----HHHHHHHHHHHHh-CCCEEEEecCChhHHHh------------------
Q psy7366         107 GNPPLIFLDEPTSGMDPG-------A-----RRFLWTCIERAVS-EGRCVILTSHNMEECEA------------------  155 (566)
Q Consensus       107 ~~p~vLlLDEPt~~LD~~-------~-----~~~l~~~l~~l~~-~g~tviiisH~~~~~~~------------------  155 (566)
                      .+|+++++|||++.+|+.       +     ...+...|+++++ .|.|||+++|...+...                  
T Consensus       118 ~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~  197 (243)
T 1n0w_A          118 SRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIA  197 (243)
T ss_dssp             SCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------C
T ss_pred             CCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhh
Confidence            689999999999999985       3     3455555666544 49999999998766544                  


Q ss_pred             -hcCEEEEEeCC
Q psy7366         156 -LCTKLTIMVNG  166 (566)
Q Consensus       156 -~~d~i~vl~~G  166 (566)
                       +||+|++|+.|
T Consensus       198 ~~~d~vi~l~~~  209 (243)
T 1n0w_A          198 HASTTRLYLRKG  209 (243)
T ss_dssp             CTTCEEEEEEEC
T ss_pred             hcCcEEEEEEEc
Confidence             89999999875

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=98.46  E-value=2.2e-10  Score=119.42  Aligned_cols=79  Identities=6%  Similarity=-0.123  Sum_probs=59.7

Q ss_pred             ccccccCChhHHHHHHHHHHHh-CCCCEEEeeC---CC------CCCCHHHHHHHHHHHHHHHh-CCCEEEEecCChhHH
Q psy7366          85 DREVRTLSGGNKRKLSTAIALL-GNPPLIFLDE---PT------SGMDPGARRFLWTCIERAVS-EGRCVILTSHNMEEC  153 (566)
Q Consensus        85 ~~~~~~LSgG~kqrl~iA~al~-~~p~vLlLDE---Pt------~~LD~~~~~~l~~~l~~l~~-~g~tviiisH~~~~~  153 (566)
                      ++.+..+|+|++|+..+++++. .+|++++|||   |+      .++|+..+..+.+.|+++.+ .|.+||+++|. .+.
T Consensus       253 ~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~~~  331 (365)
T 1lw7_A          253 TTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-SYL  331 (365)
T ss_dssp             HHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-SHH
T ss_pred             HHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-CHH
Confidence            3445567778888888888774 6999999999   65      58999999999999988744 48999999976 567


Q ss_pred             HhhcCEEEEEe
Q psy7366         154 EALCTKLTIMV  164 (566)
Q Consensus       154 ~~~~d~i~vl~  164 (566)
                      +++|+++.+++
T Consensus       332 ~r~~~~i~~i~  342 (365)
T 1lw7_A          332 DRYNQVKAVIE  342 (365)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            77888887664

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=98.46  E-value=1.4e-10  Score=118.55  Aligned_cols=113  Identities=10%  Similarity=-0.005  Sum_probs=68.7

Q ss_pred             ceeEE---cCCCCCCCCCCHHHHHHHHH--Hh-cCC-ChhhHH--HHHHHHHHHcCCCcccccccccCChhHHHHHHHHH
Q psy7366          33 YIGYC---PQFDALNDRLTPREHLEFYS--RV-RNV-PSVLLN--TIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAI  103 (566)
Q Consensus        33 ~ig~v---~Q~~~l~~~~tv~e~l~~~~--~~-~~~-~~~~~~--~~~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~  103 (566)
                      .++++   +|++.++++.++.|+..++.  .. ..+ ......  .++..++..+++....++. .+||+||+||+..++
T Consensus        76 ~l~~l~~~~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~-~~ls~g~~Q~~~ad~  154 (318)
T 1nij_A           76 ALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQM-NQFTIAQSQVGYADR  154 (318)
T ss_dssp             HHHHHHHHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHH-HHCHHHHHHHHTCSE
T ss_pred             HHHHHHhHHhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHH-hhchHHHHHHHhCCE
Confidence            46666   67766656667666654321  00 000 000000  0111222333443333333 379999999998888


Q ss_pred             HHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHHhhcC
Q psy7366         104 ALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCT  158 (566)
Q Consensus       104 al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~~~d  158 (566)
                      +++.+|+++  |||         +.+.+.|+++. .+.+|+++||+..+++.+.|
T Consensus       155 ill~k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~~~~~l~~  197 (318)
T 1nij_A          155 ILLTKTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDIDLGLLFN  197 (318)
T ss_dssp             EEEECTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCCCGGGGSC
T ss_pred             EEEECcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCCCHHHHhC
Confidence            888899887  888         78888888874 68999999998655554443

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=98.46  E-value=2e-08  Score=99.02  Aligned_cols=58  Identities=21%  Similarity=0.127  Sum_probs=50.2

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHH---CCCCCCccEEE--------EcCccCCC--chHHhcCceEEEecC
Q psy7366         370 GRGECFGLLGLNGAGKTTTFKMLT---GAIKPTSGNAY--------VMNHSIRD--SMDLVRSYIGYCPQF  427 (566)
Q Consensus       370 ~~Ge~~~l~G~NGsGKSTLl~~i~---G~~~~~~G~i~--------~~g~~~~~--~~~~~~~~i~~v~q~  427 (566)
                      .+|++++|+|||||||||++++|+   |+..+++|.++        .+|.++..  ....+++.+++++|.
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   95 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVS   95 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEec
Confidence            789999999999999999999999   99999999999        88887743  344566789999875

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=98.42  E-value=1.4e-07  Score=87.58  Aligned_cols=119  Identities=10%  Similarity=0.070  Sum_probs=69.5

Q ss_pred             eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCc--cC-CCch----HHhcCceEEEecCCC--CCC-
Q psy7366         363 NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH--SI-RDSM----DLVRSYIGYCPQFDA--LND-  432 (566)
Q Consensus       363 ~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~--~~-~~~~----~~~~~~i~~v~q~~~--l~~-  432 (566)
                      +++++++.+| +++|+||||||||||+++|.+++.+..|.....+.  ++ ....    ......|.+++|++.  +.+ 
T Consensus        18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~   96 (182)
T 3kta_A           18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPID   96 (182)
T ss_dssp             SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCCSSSS
T ss_pred             ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCCcccccC
Confidence            7889999999 99999999999999999999998887665322221  11 1100    012346888898753  111 


Q ss_pred             --CCCHHHHHHHH----HHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHH
Q psy7366         433 --RLTPREHLEFY----SRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLS  487 (566)
Q Consensus       433 --~~tv~e~l~~~----~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~  487 (566)
                        .+++...+.-.    ....+.+  .....+.+++..+++.+.   .+.-++.|+.+++.
T Consensus        97 ~~~~~i~r~~~~~~~~~~~i~g~~--~~~~~~~~~l~~~~l~~~---~~~~~~qg~~~~l~  152 (182)
T 3kta_A           97 EDEVVIRRRVYPDGRSSYWLNGRR--ATRSEILDILTAAMISPD---GYNIVLQGDITKFI  152 (182)
T ss_dssp             SSEEEEEEEECTTSCEEEEETTEE--ECHHHHHHHHHHTTCCTT---CTTEECTTCTTHHH
T ss_pred             CcEEEEEEEEEeCCcEEEEECCeE--cCHHHHHHHHHHcCCCCC---CCEEEEcccHHHHH
Confidence              12222111000    0001111  123457788888888642   12346777776654

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=98.42  E-value=1.6e-08  Score=99.53  Aligned_cols=52  Identities=23%  Similarity=0.355  Sum_probs=36.0

Q ss_pred             eEEEeee-EEEeCCcCCCcceeeeeeEEEeC---CcEEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         342 VLVVKRL-FKIYANSKGTKPAVNQISFGVGR---GECFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       342 ~l~~~~l-~~~y~~~~~~~~~l~~isl~i~~---Ge~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      +++++|+ ++.|+   +...+|+++||+|.+   |++++|+|++||||||+.++|++.+
T Consensus        17 ~l~~~~~~~~~~~---~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l   72 (250)
T 3nwj_A           17 LLETGSLLHSPFD---EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL   72 (250)
T ss_dssp             ------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             ceEEcceeeEEec---CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence            6899999 99993   256799999999999   9999999999999999999999854

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.42  E-value=7.2e-08  Score=91.27  Aligned_cols=35  Identities=23%  Similarity=0.195  Sum_probs=30.0

Q ss_pred             EEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCcc
Q psy7366         367 FGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG  401 (566)
Q Consensus       367 l~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G  401 (566)
                      ++|.+|++++|+|||||||||++++|++.+.|+.|
T Consensus         1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~   35 (207)
T 2j41_A            1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK   35 (207)
T ss_dssp             ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence            46889999999999999999999999999977666

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=98.41  E-value=6.3e-08  Score=100.92  Aligned_cols=59  Identities=20%  Similarity=0.216  Sum_probs=47.7

Q ss_pred             HHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHHhhcCEEEEEe
Q psy7366          98 KLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMV  164 (566)
Q Consensus        98 rl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~~~d~i~vl~  164 (566)
                      +.+|+.+|..+|++|++|||+   |+++..   .+++. ...|.+|+.++|+.+ +.+.|||++.|.
T Consensus       199 ~~~l~~~L~~~pd~illdE~~---d~e~~~---~~l~~-~~~g~~vi~t~H~~~-~~~~~~rl~~l~  257 (372)
T 2ewv_A          199 ADALRAALREDPDVIFVGEMR---DLETVE---TALRA-AETGHLVFGTLHTNT-AIDTIHRIVDIF  257 (372)
T ss_dssp             HHHHHHHTTSCCSEEEESCCC---SHHHHH---HHHHH-HTTTCEEEECCCCCS-HHHHHHHHHHTS
T ss_pred             HHHHHHHhhhCcCEEEECCCC---CHHHHH---HHHHH-HhcCCEEEEEECcch-HHHHHHHHHHhc
Confidence            469999999999999999999   776644   44444 356899999999965 778899998764

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=98.40  E-value=1.8e-09  Score=116.49  Aligned_cols=129  Identities=14%  Similarity=0.139  Sum_probs=84.3

Q ss_pred             cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc-hHHhcCceEEEecCCC-CCCCCCH
Q psy7366         359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS-MDLVRSYIGYCPQFDA-LNDRLTP  436 (566)
Q Consensus       359 ~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~v~q~~~-l~~~~tv  436 (566)
                      ..+++++++.+++|  +.|+||||+|||||+++|++...  .+.+.+++.++... .....+++.+++|... ..+...+
T Consensus        53 ~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~  128 (499)
T 2dhr_A           53 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVF  128 (499)
T ss_dssp             GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEE
T ss_pred             hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEE
Confidence            34678889999999  88999999999999999999875  78899999876431 1112233555666542 3344444


Q ss_pred             HHHHHHHHHhcC----CCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCC
Q psy7366         437 REHLEFYSRVRN----VPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTS  506 (566)
Q Consensus       437 ~e~l~~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~  506 (566)
                      .|++........    ....+..+.+..++             ..||||++|+..+++|...+|++  |||+..
T Consensus       129 IDEId~l~~~r~~~~~~~~~e~~~~l~~LL-------------~~Ldg~~~~~~viviAatn~p~~--LD~aLl  187 (499)
T 2dhr_A          129 IDEIDAVGRKRGSGVGGGNDEREQTLNQLL-------------VEMDGFEKDTAIVVMAATNRPDI--LDPALL  187 (499)
T ss_dssp             EECGGGTCCCSSSSTTTSSHHHHHHHHHHH-------------HHGGGCCSSCCCEEEECCSCGGG--SCTTTS
T ss_pred             EehHHHHHHhhccCcCCCcHHHHHHHHHHH-------------HHhcccccCccEEEEEecCChhh--cCcccc
Confidence            455532211111    01122223333433             34788888888888999999987  888865

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=98.39  E-value=1.2e-08  Score=102.55  Aligned_cols=114  Identities=16%  Similarity=0.097  Sum_probs=75.8

Q ss_pred             CCcchHHHHHhccccCCCccCCCCCcccccccceeEEcCCCCCCCCCCHHHHHHHHHH------hcCCChhhHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQKVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSR------VRNVPSVLLNTIVNES   74 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~------~~~~~~~~~~~~~~~~   74 (566)
                      +||||+.+.+.+.+-+.    +    ..  ...+.+|+|++.+++. ++.+|+.+...      .++.+.........+.
T Consensus        42 sGKSTla~~L~~~l~~~----g----~~--~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l~~~  110 (290)
T 1odf_A           42 SGKSFTSIQIYNHLMEK----Y----GG--EKSIGYASIDDFYLTH-EDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQEV  110 (290)
T ss_dssp             SSHHHHHHHHHHHHHHH----H----GG--GSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGGGSSSCSTTSBCHHHHHHH
T ss_pred             CCHHHHHHHHHHHhhhc----C----CC--CceEEEeccccccCCh-HHHHHHhccccccchhhhccCcchhHHHHHHHH
Confidence            59999999999988431    0    01  1235556999887754 78888877521      1223333234456667


Q ss_pred             HHHcCCC------c--ccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHH
Q psy7366          75 LNKFALG------H--YSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGA  125 (566)
Q Consensus        75 l~~~gl~------~--~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~  125 (566)
                      ++.+.-.      .  ....+-..+||||+||+.+|++..-+|+|||+||||++||+..
T Consensus       111 l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~~  169 (290)
T 1odf_A          111 LNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPIL  169 (290)
T ss_dssp             HHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCCC
T ss_pred             HHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCccc
Confidence            7766443      1  1234557899999999999733333999999999999999864

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=98.38  E-value=2.3e-07  Score=86.06  Aligned_cols=46  Identities=20%  Similarity=0.234  Sum_probs=41.6

Q ss_pred             CCCCEEEeeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEecCChhH
Q psy7366         107 GNPPLIFLDEPTS-GMDPGARRFLWTCIERAVSEGRCVILTSHNMEE  152 (566)
Q Consensus       107 ~~p~vLlLDEPt~-~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~  152 (566)
                      .+|++||||||++ ++|+..++.+.+++....++|+++|++||...+
T Consensus        99 ~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~  145 (180)
T 3ec2_A           99 LNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQ  145 (180)
T ss_dssp             HTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSC
T ss_pred             cCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChh
Confidence            3999999999985 999999999999999887789999999998744

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=98.36  E-value=1.7e-08  Score=95.73  Aligned_cols=53  Identities=21%  Similarity=0.283  Sum_probs=46.2

Q ss_pred             CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEE--EEcCccCC
Q psy7366         358 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA--YVMNHSIR  411 (566)
Q Consensus       358 ~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i--~~~g~~~~  411 (566)
                      ...+.+..++..++|++++|+||||||||||.++|++.+. ..|.+  +++|.++.
T Consensus        11 ~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~   65 (200)
T 3uie_A           11 SVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR   65 (200)
T ss_dssp             CCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred             ccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence            4556778888889999999999999999999999999987 67888  88887653

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=98.33  E-value=2.3e-07  Score=103.93  Aligned_cols=132  Identities=17%  Similarity=0.115  Sum_probs=81.8

Q ss_pred             eEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCC--CccEEEEcCccCCC-chHHhcCceEEEecCCCCCCCCCHHHHHHH
Q psy7366         366 SFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP--TSGNAYVMNHSIRD-SMDLVRSYIGYCPQFDALNDRLTPREHLEF  442 (566)
Q Consensus       366 sl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~-~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~  442 (566)
                      |+++.+|..++|+|+||+|||||++.|++...+  ..|+| .+|..+.. .....++.+++.+|...++.. ++..|+  
T Consensus         3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~~nl--   78 (665)
T 2dy1_A            3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GHRVFL--   78 (665)
T ss_dssp             ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TEEEEE--
T ss_pred             CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CEEEEE--
Confidence            456789999999999999999999999976654  67888 66666544 233445567777665443221 111111  


Q ss_pred             HHHhcCCCchHHHHHHHHHHHHcCCCCccccCcC-cCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy7366         443 YSRVRNVPSVLLNTIVNESLNKFALGHYSDREVR-TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIE  521 (566)
Q Consensus       443 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~  521 (566)
                                                  .|.+.. .++     .......-..+.-++++| |+.|+++..+..+    +
T Consensus        79 ----------------------------iDTpG~~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~~~----~  120 (665)
T 2dy1_A           79 ----------------------------LDAPGYGDFV-----GEIRGALEAADAALVAVS-AEAGVQVGTERAW----T  120 (665)
T ss_dssp             ----------------------------EECCCSGGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHHHHH----H
T ss_pred             ----------------------------EeCCCccchH-----HHHHHHHhhcCcEEEEEc-CCcccchhHHHHH----H
Confidence                                        111100 000     112222235677899999 9999998877333    3


Q ss_pred             HHHhCCcEEEEEccCHHH
Q psy7366         522 RAVSEGRCVILTSHNMEE  539 (566)
Q Consensus       522 ~~~~~g~tvl~vsHd~~~  539 (566)
                      .+.+.+..+|++.|.++.
T Consensus       121 ~~~~~~ip~ilv~NKiD~  138 (665)
T 2dy1_A          121 VAERLGLPRMVVVTKLDK  138 (665)
T ss_dssp             HHHHTTCCEEEEEECGGG
T ss_pred             HHHHccCCEEEEecCCch
Confidence            333458889999998875

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=98.32  E-value=1.2e-09  Score=102.38  Aligned_cols=143  Identities=10%  Similarity=-0.035  Sum_probs=82.3

Q ss_pred             CCcchHHHHHhccccCCC-ccCCCCCcc-cccccceeEEcCCCCCCCCCCHHHHHHHHHHhc---CCChhhHHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ-KVPGSNPTI-DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVR---NVPSVLLNTIVNESL   75 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~-~~~~~~~~~-~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l   75 (566)
                      .||||++|.+.+..-.|. .+.+..... ......++|++|++.  +..+|.+++.+.....   +.. ..    ++.++
T Consensus        20 sGKSTl~~~La~~~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~~~~~~~~-~~----~~~~~   92 (191)
T 1zp6_A           20 SGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGRYAKEGYF-VI----LDGVV   92 (191)
T ss_dssp             SCHHHHHHHHHTCSSSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHHHHHTSCE-EE----ECSCC
T ss_pred             CCHHHHHHHHHhccCCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHHHhccCCe-EE----EeccC
Confidence            599999999999732222 122211000 011234678888654  3568888887653321   100 00    00111


Q ss_pred             HHcCCCccc--ccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHH
Q psy7366          76 NKFALGHYS--DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEEC  153 (566)
Q Consensus        76 ~~~gl~~~~--~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~  153 (566)
                      ..+++....  +.++..+|+|++|+++++|++.++|+++        +|+..++.+++.++.+...+..+|.++|.  .+
T Consensus        93 ~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l~~~~~~~i~t~~~--~~  162 (191)
T 1zp6_A           93 RPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADLGAFEHHVLPVSGK--DT  162 (191)
T ss_dssp             CTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCCGGGGGGEEECTTC--CT
T ss_pred             cHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhccCcccccEEECCCC--CH
Confidence            112222111  4456789999999999999999999887        68998888888887654333334444331  33


Q ss_pred             HhhcCEE
Q psy7366         154 EALCTKL  160 (566)
Q Consensus       154 ~~~~d~i  160 (566)
                      ++++++|
T Consensus       163 ~~~~~~i  169 (191)
T 1zp6_A          163 DQALQSA  169 (191)
T ss_dssp             TTTTTTT
T ss_pred             HHHHHHH
Confidence            4455555

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.28  E-value=5.9e-07  Score=81.06  Aligned_cols=48  Identities=13%  Similarity=0.217  Sum_probs=39.5

Q ss_pred             HhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCE-EEEecCC-hhHH
Q psy7366         105 LLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC-VILTSHN-MEEC  153 (566)
Q Consensus       105 l~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~t-viiisH~-~~~~  153 (566)
                      ++.+|++||||||++ +++..++.|++++..+.+.|++ +|++||. ++++
T Consensus        80 ~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~~p~~l  129 (149)
T 2kjq_A           80 AAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEYTPQQL  129 (149)
T ss_dssp             GGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESSCTTTS
T ss_pred             HHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCCCHHHc
Confidence            356899999999998 7776799999999998888888 8888885 3434

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.27  E-value=6.5e-07  Score=92.12  Aligned_cols=125  Identities=11%  Similarity=0.083  Sum_probs=64.9

Q ss_pred             CCcchHHHHHhc-cccCCCc---cCCCCCc-ccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCC-ChhhHHHHHHHH
Q psy7366           1 MGLTTTPKRVVT-LLLTTQK---VPGSNPT-IDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNV-PSVLLNTIVNES   74 (566)
Q Consensus         1 ~Gktt~~k~~~~-~~~~~~~---~~~~~~~-~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~   74 (566)
                      +||||+++.+.+ ++-++..   +.+.... .......+++++|.+.+....+-          .+. ....+.+.++++
T Consensus        47 ~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~i~~~  116 (354)
T 1sxj_E           47 TGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSD----------MGNNDRIVIQELLKEV  116 (354)
T ss_dssp             SSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC--------------CCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhh----------cCCcchHHHHHHHHHH
Confidence            599999999999 4433321   1111000 01123458888887644211110          011 111123333333


Q ss_pred             HHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHH
Q psy7366          75 LNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEEC  153 (566)
Q Consensus        75 l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~  153 (566)
                      ....++...    . +|||           +..+|+|+|||||++ ||+.+...|.+.|.+. ..+.++|++||+.+.+
T Consensus       117 ~~~~~~~~~----~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~-~~~~~~Il~t~~~~~l  177 (354)
T 1sxj_E          117 AQMEQVDFQ----D-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKY-SKNIRLIMVCDSMSPI  177 (354)
T ss_dssp             TTTTC----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHS-TTTEEEEEEESCSCSS
T ss_pred             HHhcccccc----c-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhh-cCCCEEEEEeCCHHHH
Confidence            333333221    1 5676           788999999999999 9999999999999875 4478999999997643

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.26  E-value=2.8e-07  Score=94.99  Aligned_cols=98  Identities=12%  Similarity=0.051  Sum_probs=72.6

Q ss_pred             CCcchHHHHHhcccc-CCC-ccC---CCCCcccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLL-TTQ-KVP---GSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL   75 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~-~~~-~~~---~~~~~~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l   75 (566)
                      +||||++|++++... +.. .+.   +.+.. ......+++++|++.+++.++|.++.     ..+++..++...+.+++
T Consensus       226 ~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~-tt~~~~i~~v~q~~~l~dtpgv~e~~-----l~~l~~~e~~~~~~e~l  299 (358)
T 2rcn_A          226 VGKSSLLNALLGLQNEILTNDVSNVSGLGQH-TTTAARLYHFPHGGDVIDSPGVREFG-----LWHLEPEQITQGFVEFH  299 (358)
T ss_dssp             SSHHHHHHHHHCCSSCCCCC--------------CCCEEEECTTSCEEEECHHHHTCC-----CCCCCHHHHHHTSGGGG
T ss_pred             ccHHHHHHHHhccccccccCCccccCCCCcc-ceEEEEEEEECCCCEecCcccHHHhh-----hcCCCHHHHHHHHHHHH
Confidence            599999999999886 433 121   21111 12345699999999888888888841     23455666777888999


Q ss_pred             HHcCCCcccccccccCChhHHHHHHHHHHH
Q psy7366          76 NKFALGHYSDREVRTLSGGNKRKLSTAIAL  105 (566)
Q Consensus        76 ~~~gl~~~~~~~~~~LSgG~kqrl~iA~al  105 (566)
                      +.+|+....+..+.+|| ||+||++||+++
T Consensus       300 ~~~gl~~f~~~~~~~lS-G~~~r~ala~gl  328 (358)
T 2rcn_A          300 DYLGHCKYRDCKHDADP-GCAIREAVENGA  328 (358)
T ss_dssp             GGTTCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred             HHcCCchhcCCCcccCC-HHHHHHHHHhcC
Confidence            99999998999999999 999999999874

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=98.26  E-value=1.4e-06  Score=90.46  Aligned_cols=49  Identities=14%  Similarity=0.067  Sum_probs=38.9

Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCcEEEEEccCHHHHHhh
Q psy7366         494 GNPPLIFLDEPTSGMDPGARRFLWTCIERAVS---EGRCVILTSHNMEECEAL  543 (566)
Q Consensus       494 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~---~g~tvl~vsHd~~~~~~~  543 (566)
                      .+|.+|++||+... |......+.+.+.++..   .+.++|++||+.+....+
T Consensus       124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l  175 (389)
T 1fnn_A          124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNL  175 (389)
T ss_dssp             TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTS
T ss_pred             CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHh
Confidence            56889999999876 88888888888876655   578999999998655443

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=98.23  E-value=1e-06  Score=90.24  Aligned_cols=128  Identities=11%  Similarity=0.117  Sum_probs=82.7

Q ss_pred             eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHH
Q psy7366         361 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHL  440 (566)
Q Consensus       361 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l  440 (566)
                      -|+.+.--+.+|+++.|.|++|+|||||..-++......       |           ..+.|+.-      .++..+..
T Consensus        35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~-------g-----------~~Vl~fSl------Ems~~ql~   90 (338)
T 4a1f_A           35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALND-------D-----------RGVAVFSL------EMSAEQLA   90 (338)
T ss_dssp             HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHT-------T-----------CEEEEEES------SSCHHHHH
T ss_pred             HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc-------C-----------CeEEEEeC------CCCHHHHH
Confidence            466665578999999999999999999998887543221       1           13555542      34554432


Q ss_pred             HHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHH
Q psy7366         441 EFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCI  520 (566)
Q Consensus       441 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l  520 (566)
                      .-.               ......+.+...   .-..||.++.+|+..|...+.+++++|.|+|...+|     .|...+
T Consensus        91 ~Rl---------------ls~~~~v~~~~l---~~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~-----~i~~~i  147 (338)
T 4a1f_A           91 LRA---------------LSDLTSINMHDL---ESGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE-----QIRLQL  147 (338)
T ss_dssp             HHH---------------HHHHHCCCHHHH---HHTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH-----HHHHHH
T ss_pred             HHH---------------HHHhhCCCHHHH---hcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH-----HHHHHH
Confidence            211               111111111111   114799999999999999999999999999965433     555666


Q ss_pred             HHHHh-C-CcEEEEEcc
Q psy7366         521 ERAVS-E-GRCVILTSH  535 (566)
Q Consensus       521 ~~~~~-~-g~tvl~vsH  535 (566)
                      +++++ . |..+|+|-|
T Consensus       148 r~l~~~~gg~~lIVIDy  164 (338)
T 4a1f_A          148 RKLKSQHKELGIAFIDY  164 (338)
T ss_dssp             HHHHHHCTTEEEEEEEE
T ss_pred             HHHHHhcCCCCEEEEec
Confidence            66654 3 678887743

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=98.22  E-value=2.6e-09  Score=111.71  Aligned_cols=116  Identities=16%  Similarity=0.123  Sum_probs=83.7

Q ss_pred             eEEcCCCCCCCCCCHHHHH--HHHHHhcCCChhhHHHHHHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCC--C
Q psy7366          35 GYCPQFDALNDRLTPREHL--EFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNP--P  110 (566)
Q Consensus        35 g~v~Q~~~l~~~~tv~e~l--~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p--~  110 (566)
                      .++.+.|.++..++..|++  .|....+..+.         ++..+..  ..+..+..+|++.            +|  +
T Consensus        87 i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~---------il~Vvd~--~~d~~i~~v~~~~------------dP~~d  143 (392)
T 1ni3_A           87 LTVFDIAGLTKGASTGVGLGNAFLSHVRAVDA---------IYQVVRA--FDDAEIIHVEGDV------------DPIRD  143 (392)
T ss_dssp             EEEECTGGGCCCCCSSSSSCHHHHHHHTTCSE---------EEEEEEC--CCTTCSSCCSSSS------------CHHHH
T ss_pred             eEEEeccccccCCcHHHHHHHHHHHHHHHHHH---------HHHHHhc--cccceeeeecccc------------Ccchh
Confidence            4778888888887876655  44433332211         1111111  1134455567653            99  9


Q ss_pred             EEEeeCCCCCCCHHHHHHHHHHHHHH-HhCCCEEEEecCChhHHHhhcCEEE-EEeCC-EEEEecChh
Q psy7366         111 LIFLDEPTSGMDPGARRFLWTCIERA-VSEGRCVILTSHNMEECEALCTKLT-IMVNG-QFTCLGSAT  175 (566)
Q Consensus       111 vLlLDEPt~~LD~~~~~~l~~~l~~l-~~~g~tviiisH~~~~~~~~~d~i~-vl~~G-~i~~~g~~~  175 (566)
                      ++++|||++++|+..++..++.++.+ .+.|.||+  +|.+.++.++||+|. +|++| +++..|+.+
T Consensus       144 i~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~~  209 (392)
T 1ni3_A          144 LSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKVYQYLTETKQPIRKGDWS  209 (392)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCGGGSCCC
T ss_pred             hhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHHHHHhccCCceeecCCCC
Confidence            99999999999999999999999987 66677754  999999999999999 99999 887666543

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=98.21  E-value=2.8e-08  Score=104.77  Aligned_cols=72  Identities=24%  Similarity=0.183  Sum_probs=55.9

Q ss_pred             ccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEe-cCChhHHHhhcCEE
Q psy7366          85 DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILT-SHNMEECEALCTKL  160 (566)
Q Consensus        85 ~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviii-sH~~~~~~~~~d~i  160 (566)
                      ++++.+||+|++|++++|++|+..|.+|++    |.+|+.....+..+.+.+.+.|.+++++ +|.-+.+.++++.+
T Consensus       247 ~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i  319 (416)
T 1udx_A          247 DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEEEAVKALADALAREGLAVLPVSALTGAGLPALKEAL  319 (416)
T ss_dssp             SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhHHHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHH
Confidence            578889999999999999999999999999    9999987754444444455567776654 46666677666665

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=98.18  E-value=9.2e-08  Score=88.26  Aligned_cols=39  Identities=15%  Similarity=0.330  Sum_probs=34.0

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC
Q psy7366         370 GRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  412 (566)
Q Consensus       370 ~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~  412 (566)
                      .+|++++|+|+|||||||+.++|++.+    |.+.+++.++..
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~~   44 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLHP   44 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGCC
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccccc
Confidence            468999999999999999999999865    888999877643

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.11  E-value=7.6e-07  Score=82.76  Aligned_cols=37  Identities=16%  Similarity=0.071  Sum_probs=31.0

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHHCCCCC-CccEEEEc
Q psy7366         370 GRGECFGLLGLNGAGKTTTFKMLTGAIKP-TSGNAYVM  406 (566)
Q Consensus       370 ~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~-~~G~i~~~  406 (566)
                      .+|++++|+||||||||||+++|++.+++ ..|.|...
T Consensus         3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~t   40 (180)
T 1kgd_A            3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHT   40 (180)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeecc
Confidence            36899999999999999999999998874 45666544

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=98.09  E-value=1.1e-06  Score=85.24  Aligned_cols=41  Identities=15%  Similarity=0.114  Sum_probs=36.3

Q ss_pred             eEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccC
Q psy7366         366 SFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI  410 (566)
Q Consensus       366 sl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~  410 (566)
                      +.+.++|++++|.|+||||||||+++|+|.    .|+|.+.+++.
T Consensus        14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~   54 (230)
T 2vp4_A           14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPV   54 (230)
T ss_dssp             BTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTH
T ss_pred             cCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCH
Confidence            345589999999999999999999999998    78899998764

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=98.08  E-value=7.9e-06  Score=84.57  Aligned_cols=173  Identities=12%  Similarity=0.071  Sum_probs=85.5

Q ss_pred             cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHC--CCCCCccEEEEcCccCCC-chHHhcCceEEEecCCC-CCCCC
Q psy7366         359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG--AIKPTSGNAYVMNHSIRD-SMDLVRSYIGYCPQFDA-LNDRL  434 (566)
Q Consensus       359 ~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G--~~~~~~G~i~~~g~~~~~-~~~~~~~~i~~v~q~~~-l~~~~  434 (566)
                      ..+|++++++++   .++|+|++|||||||++.|+|  ++++.+|.++..+..+.. .........+.+++.+. .+.+.
T Consensus        24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (360)
T 3t34_A           24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDF  100 (360)
T ss_dssp             SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCH
T ss_pred             ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCH
Confidence            358999999998   899999999999999999999  667777766433322110 00000122344443321 11111


Q ss_pred             -CHHHHHHHHH-Hhc----CCCchHHHHHH----HHHHHHcCCCCccc-cCcCcCChhHHHHHHHHHHHcCCCCEEEEeC
Q psy7366         435 -TPREHLEFYS-RVR----NVPSVLLNTIV----NESLNKFALGHYSD-REVRTLSGGNKRKLSTAIALLGNPPLIFLDE  503 (566)
Q Consensus       435 -tv~e~l~~~~-~~~----~~~~~~~~~~~----~~~l~~~~l~~~~~-~~~~~LSgGqkqrv~la~al~~~p~lllLDE  503 (566)
                       .+.+.+.... ...    ++......-.+    ..-+..+++..... ....+.++.++++..+++..+.+|+++||.-
T Consensus       101 ~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv  180 (360)
T 3t34_A          101 AAVRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAI  180 (360)
T ss_dssp             HHHHHHHHHHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEE
T ss_pred             HHHHHHHHHHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEe
Confidence             1111111000 000    00000000000    00000111111111 1123467788999999999999999888874


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhCC-cEEEEEcc
Q psy7366         504 PTSGMDPGARRFLWTCIERAVSEG-RCVILTSH  535 (566)
Q Consensus       504 Pt~gLD~~~~~~l~~~l~~~~~~g-~tvl~vsH  535 (566)
                      ..+..|... ....++++.+...| .+|+++|.
T Consensus       181 ~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK  212 (360)
T 3t34_A          181 SPANQDLAT-SDAIKISREVDPSGDRTFGVLTK  212 (360)
T ss_dssp             EETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred             ecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence            444455443 34456666665555 57777765

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.08  E-value=7.3e-06  Score=86.54  Aligned_cols=39  Identities=26%  Similarity=0.172  Sum_probs=32.6

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCcc
Q psy7366         371 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS  409 (566)
Q Consensus       371 ~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~  409 (566)
                      ++.+++++|||||||||++..|++.+.+..++|.+-+.+
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D  134 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD  134 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecC
Confidence            678999999999999999999999988776666554433

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=98.07  E-value=2.7e-06  Score=80.36  Aligned_cols=75  Identities=12%  Similarity=-0.043  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHcCCCcc-cccccccCChhHHHH-HHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q psy7366          68 NTIVNESLNKFALGHY-SDREVRTLSGGNKRK-LSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC  142 (566)
Q Consensus        68 ~~~~~~~l~~~gl~~~-~~~~~~~LSgG~kqr-l~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~t  142 (566)
                      ..++.+++...++... ...++..+|+||+|+ +..+++++.+|.++++|||||++|+.+++++++.|.++..+|.+
T Consensus       126 ~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~  202 (210)
T 1pui_A          126 DQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP  202 (210)
T ss_dssp             HHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence            3456667777888753 467789999999999 89999999999999999999999999999999999998666644

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=98.04  E-value=1.8e-05  Score=81.44  Aligned_cols=152  Identities=15%  Similarity=0.153  Sum_probs=83.8

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHHCC--CCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHHHHH
Q psy7366         368 GVGRGECFGLLGLNGAGKTTTFKMLTGA--IKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSR  445 (566)
Q Consensus       368 ~i~~Ge~~~l~G~NGsGKSTLl~~i~G~--~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~  445 (566)
                      -+++|+++.|.||+|+|||||+..++..  .++..|     |.         ..++.|+.-+..+    +......+...
T Consensus       118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~g-----g~---------~~~vlyi~~E~~~----~~~~l~~~~~~  179 (343)
T 1v5w_A          118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGG-----YP---------GGKIIFIDTENTF----RPDRLRDIADR  179 (343)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTT-----BC---------CCEEEEEESSSCC----CHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccC-----CC---------CCeEEEEECCCCC----CHHHHHHHHHH
Confidence            4789999999999999999999988864  332211     00         0135555544321    22221111111


Q ss_pred             hcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHH-HHHHHHHHHc----CCCCEEEEeCCCCCCCHH--------H
Q psy7366         446 VRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNK-RKLSTAIALL----GNPPLIFLDEPTSGMDPG--------A  512 (566)
Q Consensus       446 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqk-qrv~la~al~----~~p~lllLDEPt~gLD~~--------~  512 (566)
                       .+...       .++++.+.+       ....++.+. +.+..++.++    .+++++++|+.++-....        .
T Consensus       180 -~g~~~-------~~~l~~l~~-------~~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~  244 (343)
T 1v5w_A          180 -FNVDH-------DAVLDNVLY-------ARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAE  244 (343)
T ss_dssp             -TTCCH-------HHHHHTEEE-------EECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHH
T ss_pred             -cCCCH-------HHHHhceeE-------eecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHH
Confidence             12221       122332211       111233332 3344455554    679999999999876432        1


Q ss_pred             ----HHHHHHHHHHHHhC-CcEEEEEccCHHH-------------------HHhhCCEEEEEEC
Q psy7366         513 ----RRFLWTCIERAVSE-GRCVILTSHNMEE-------------------CEALCTKLTIMVN  552 (566)
Q Consensus       513 ----~~~l~~~l~~~~~~-g~tvl~vsHd~~~-------------------~~~~~drv~~l~~  552 (566)
                          ...+...|..++++ +.+||+++|....                   +...+|-++.|+.
T Consensus       245 r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~~~~~~~~~~~g~~~~~~gg~~i~~~ad~~l~l~r  308 (343)
T 1v5w_A          245 RQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPGATMTFQADPKKPIGGHILAHASTTRISLRK  308 (343)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCEEEEEECC-------------------CCTTTTSSSEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHhCCEEEEEeeceecCCCccccCCCCCcCCchHHHHHhCCEEEEEEE
Confidence                23444555555554 8999999996542                   3445788888874

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=98.03  E-value=9.6e-07  Score=83.64  Aligned_cols=42  Identities=21%  Similarity=0.270  Sum_probs=37.6

Q ss_pred             EeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccC
Q psy7366         369 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI  410 (566)
Q Consensus       369 i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~  410 (566)
                      ..+|++++|+|+||||||||+++|++.+++..|.|.+.+.+.
T Consensus        19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~   60 (201)
T 1rz3_A           19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD   60 (201)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence            578999999999999999999999999988889998876654

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=98.02  E-value=2.2e-06  Score=80.83  Aligned_cols=39  Identities=26%  Similarity=0.216  Sum_probs=24.8

Q ss_pred             CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         358 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       358 ~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      ...+++|+||++.+|++++|+|++||||||+.+.|++.+
T Consensus        11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l   49 (199)
T 3vaa_A           11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL   49 (199)
T ss_dssp             -------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence            346899999999999999999999999999999999765

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.01  E-value=1.1e-06  Score=89.81  Aligned_cols=145  Identities=8%  Similarity=-0.046  Sum_probs=90.8

Q ss_pred             CCcchHHHHHhccccCCCc---cCCCCCcc----c-----ccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQK---VPGSNPTI----D-----KNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLN   68 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~---~~~~~~~~----~-----~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~   68 (566)
                      .|||||++.+.+++.+...   +.+.+...    .     ....+|.+++|...+++.++|++|+.++... +.+.    
T Consensus       140 aGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~~~~-~~d~----  214 (328)
T 3e70_C          140 SGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHAKAR-GIDV----  214 (328)
T ss_dssp             SSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHHHHH-TCSE----
T ss_pred             CCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHHHhc-cchh----
Confidence            5999999999999875441   11111110    0     1223466999999998889999999875431 1111    


Q ss_pred             HHHHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEec
Q psy7366          69 TIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAV-SEGRCVILTS  147 (566)
Q Consensus        69 ~~~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~-~~g~tviiis  147 (566)
                          -+++..|........+.+||+       +++++..++.+++||.+|.       ..+.+.++.+. ..|.|+|++|
T Consensus       215 ----vliDtaG~~~~~~~l~~eL~~-------i~ral~~de~llvLDa~t~-------~~~~~~~~~~~~~~~it~iilT  276 (328)
T 3e70_C          215 ----VLIDTAGRSETNRNLMDEMKK-------IARVTKPNLVIFVGDALAG-------NAIVEQARQFNEAVKIDGIILT  276 (328)
T ss_dssp             ----EEEEECCSCCTTTCHHHHHHH-------HHHHHCCSEEEEEEEGGGT-------THHHHHHHHHHHHSCCCEEEEE
T ss_pred             ----hHHhhccchhHHHHHHHHHHH-------HHHHhcCCCCEEEEecHHH-------HHHHHHHHHHHHhcCCCEEEEe
Confidence                013334554444455555553       8899998888888885554       34555556665 3589999999


Q ss_pred             CCh---------hHHHhhcCEEEEEeCCEE
Q psy7366         148 HNM---------EECEALCTKLTIMVNGQF  168 (566)
Q Consensus       148 H~~---------~~~~~~~d~i~vl~~G~i  168 (566)
                      |.-         +.+....-.|.++..|+-
T Consensus       277 KlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~  306 (328)
T 3e70_C          277 KLDADARGGAALSISYVIDAPILFVGVGQG  306 (328)
T ss_dssp             CGGGCSCCHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CcCCccchhHHHHHHHHHCCCEEEEeCCCC
Confidence            952         233344456777766663

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=97.96  E-value=2.7e-05  Score=79.40  Aligned_cols=152  Identities=15%  Similarity=0.136  Sum_probs=80.1

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHHCCC-CCC-ccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHHHHH
Q psy7366         368 GVGRGECFGLLGLNGAGKTTTFKMLTGAI-KPT-SGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSR  445 (566)
Q Consensus       368 ~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~-~~~-~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~  445 (566)
                      -+++|+++.|.||+|+|||||...++... .+. .|     |.         ..++.|+.-+..+    +......+...
T Consensus       103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~g-----g~---------~~~vlyi~~e~~~----~~~~l~~~~~~  164 (324)
T 2z43_A          103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKG-----GL---------SGKAVYIDTEGTF----RWERIENMAKA  164 (324)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGT-----CC---------SCEEEEEESSSCC----CHHHHHHHHHH
T ss_pred             CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccC-----CC---------CCeEEEEECCCCC----CHHHHHHHHHH
Confidence            47999999999999999999998887542 331 11     00         0134555443221    12211111111


Q ss_pred             hcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhH-HHHHHHHHHHc---CCCCEEEEeCCCCCCCH--------HH-
Q psy7366         446 VRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGN-KRKLSTAIALL---GNPPLIFLDEPTSGMDP--------GA-  512 (566)
Q Consensus       446 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq-kqrv~la~al~---~~p~lllLDEPt~gLD~--------~~-  512 (566)
                       .+...       .++++.+-+       ....+..+ .+.+..++.++   .+|+++++|+.++-...        .. 
T Consensus       165 -~g~~~-------~~~~~~l~~-------~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r  229 (324)
T 2z43_A          165 -LGLDI-------DNVMNNIYY-------IRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVR  229 (324)
T ss_dssp             -TTCCH-------HHHHHTEEE-------EECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHH
T ss_pred             -hCCCH-------HHHhccEEE-------EeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHH
Confidence             12221       112221111       11123322 24566666666   67999999999876532        12 


Q ss_pred             ---HHHHHHHHHHHHhC-CcEEEEEccCHHH----------------HHhhCCEEEEEEC
Q psy7366         513 ---RRFLWTCIERAVSE-GRCVILTSHNMEE----------------CEALCTKLTIMVN  552 (566)
Q Consensus       513 ---~~~l~~~l~~~~~~-g~tvl~vsHd~~~----------------~~~~~drv~~l~~  552 (566)
                         ...+...|..++++ +.+||+++|-...                +...+|.++.|+.
T Consensus       230 ~~~~~~~l~~L~~la~~~~~~Vi~~nq~~~~~~~~~~~~~~~~gg~~l~~~~d~~l~l~r  289 (324)
T 2z43_A          230 QQKLNKHLHQLTRLAEVYDIAVIITNQVMARPDMFYGDPTVAVGGHTLYHVPGIRIQLKK  289 (324)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCEEEEEEEC------------------------CEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHhCCEEEEEcceeecCCCcCCCCCCCCchHHHHhhCcEEEEEEE
Confidence               23444455555544 8999999886432                3445787888863

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=97.95  E-value=3e-05  Score=81.24  Aligned_cols=61  Identities=15%  Similarity=0.140  Sum_probs=46.7

Q ss_pred             CCCCEEEeeCCCCCCCHHHH------------HHHHHHHHHHHhC-CCEEEEecCCh-------------------hHHH
Q psy7366         107 GNPPLIFLDEPTSGMDPGAR------------RFLWTCIERAVSE-GRCVILTSHNM-------------------EECE  154 (566)
Q Consensus       107 ~~p~vLlLDEPt~~LD~~~~------------~~l~~~l~~l~~~-g~tviiisH~~-------------------~~~~  154 (566)
                      .+|+++|+|||++.+|+...            .++.+.|++++++ |.|||+++|..                   ..+.
T Consensus       272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~  351 (400)
T 3lda_A          272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMA  351 (400)
T ss_dssp             SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHH
T ss_pred             cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHH
Confidence            68999999999999997432            5677778887654 99999999983                   2356


Q ss_pred             hhcCEEEEEeCCE
Q psy7366         155 ALCTKLTIMVNGQ  167 (566)
Q Consensus       155 ~~~d~i~vl~~G~  167 (566)
                      ..||.+++|++++
T Consensus       352 ~~ad~vl~L~~~~  364 (400)
T 3lda_A          352 YSSTTRLGFKKGK  364 (400)
T ss_dssp             HHCSEEEEEEECS
T ss_pred             HhcceEEEEEecC
Confidence            7799999998764

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.95  E-value=9.3e-07  Score=89.41  Aligned_cols=101  Identities=9%  Similarity=0.040  Sum_probs=69.4

Q ss_pred             CCcchHHHHHhccccCCC-ccC-----CCCCccc--c-cccceeEEcCCCCCC-----CCCCHHHHH--HHH------HH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ-KVP-----GSNPTID--K-NLSYIGYCPQFDALN-----DRLTPREHL--EFY------SR   58 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~-~~~-----~~~~~~~--~-~~~~ig~v~Q~~~l~-----~~~tv~e~l--~~~------~~   58 (566)
                      +||||++|+++ ...+.. .+.     |......  . ....+||++|.|.+.     +.+|+ |++  .|.      +.
T Consensus       176 ~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e~l~~~f~~~~~~~c~  253 (302)
T 2yv5_A          176 VGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-REVRNYFREFLRYQCK  253 (302)
T ss_dssp             SSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-GGGGGGCGGGHHHHHH
T ss_pred             CCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-HHHHHHHHHHHHccCC
Confidence            59999999999 765443 222     1111111  1 112689999999764     67899 887  443      12


Q ss_pred             hcC-CChhhHHHHHHHHHHHcCCCc-ccccccccCChhHHHHHHHHH
Q psy7366          59 VRN-VPSVLLNTIVNESLNKFALGH-YSDREVRTLSGGNKRKLSTAI  103 (566)
Q Consensus        59 ~~~-~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgG~kqrl~iA~  103 (566)
                      +.+ .+..+..+++.++++.++|.. ..++++..|||.++++++||+
T Consensus       254 ~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~  300 (302)
T 2yv5_A          254 YPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR  300 (302)
T ss_dssp             STTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence            232 234455678999999999986 778999999999999999986

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.93  E-value=6.6e-07  Score=90.97  Aligned_cols=47  Identities=23%  Similarity=0.368  Sum_probs=35.7

Q ss_pred             cceeeeeeEEEeCCc------EEEEEcCCCCcHHHHHHHHHCCCC--CCccEEEE
Q psy7366         359 KPAVNQISFGVGRGE------CFGLLGLNGAGKTTTFKMLTGAIK--PTSGNAYV  405 (566)
Q Consensus       359 ~~~l~~isl~i~~Ge------~~~l~G~NGsGKSTLl~~i~G~~~--~~~G~i~~  405 (566)
                      ...|.+++..+.++.      ++||+||||||||||+++|.+++.  |+.|.|.+
T Consensus        73 ~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~  127 (321)
T 3tqc_A           73 RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEV  127 (321)
T ss_dssp             HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred             hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEE
Confidence            345566666666555      999999999999999999999987  45555433

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.93  E-value=3.3e-06  Score=79.63  Aligned_cols=32  Identities=16%  Similarity=0.225  Sum_probs=27.0

Q ss_pred             eEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCC
Q psy7366         366 SFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK  397 (566)
Q Consensus       366 sl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~  397 (566)
                      |+...+|++++|+||||||||||++.|++.++
T Consensus        13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            44456899999999999999999999999876

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=97.92  E-value=1.1e-05  Score=81.06  Aligned_cols=127  Identities=14%  Similarity=0.212  Sum_probs=83.3

Q ss_pred             CCcchHHHHHhccccCCCccCCCCCcccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCC
Q psy7366           1 MGLTTTPKRVVTLLLTTQKVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFAL   80 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl   80 (566)
                      .||||+++.+.+.+.+.+            ..+|.++.+++.   ..+..|++..+++.                  +|+
T Consensus       116 sGKTTl~~~LA~~l~~~~------------G~~V~lv~~D~~---r~~a~eqL~~~~~~------------------~gl  162 (296)
T 2px0_A          116 AGKTTTLAKLAAISMLEK------------HKKIAFITTDTY---RIAAVEQLKTYAEL------------------LQA  162 (296)
T ss_dssp             SSHHHHHHHHHHHHHHTT------------CCCEEEEECCCS---STTHHHHHHHHHTT------------------TTC
T ss_pred             CCHHHHHHHHHHHHHHhc------------CCEEEEEecCcc---cchHHHHHHHHHHh------------------cCC
Confidence            599999999998885321            124888888863   44666666554432                  233


Q ss_pred             CcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHH---hCCCEEEE-ecCChhHHHhh
Q psy7366          81 GHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAV---SEGRCVIL-TSHNMEECEAL  156 (566)
Q Consensus        81 ~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~---~~g~tvii-isH~~~~~~~~  156 (566)
                      +....     .+ +..-+.+|++  +.+|+++|+|  |+|+|+.....+.++.+-+.   ..+..+++ ++|...++.++
T Consensus       163 ~~~~~-----~~-~~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~  232 (296)
T 2px0_A          163 PLEVC-----YT-KEEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHI  232 (296)
T ss_dssp             CCCBC-----SS-HHHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHH
T ss_pred             CeEec-----CC-HHHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHH
Confidence            22111     12 2233555554  4899999999  99999988776666554332   12334444 59999999999


Q ss_pred             cCEEEEEeCCEEEE
Q psy7366         157 CTKLTIMVNGQFTC  170 (566)
Q Consensus       157 ~d~i~vl~~G~i~~  170 (566)
                      |+++..+..+.++.
T Consensus       233 ~~~~~~l~~~giVl  246 (296)
T 2px0_A          233 VKRFSSVPVNQYIF  246 (296)
T ss_dssp             TTTTSSSCCCEEEE
T ss_pred             HHHHhcCCCCEEEE
Confidence            99987777777775

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.91  E-value=4.6e-06  Score=79.34  Aligned_cols=35  Identities=23%  Similarity=0.151  Sum_probs=30.0

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHHCCCCC-CccEEE
Q psy7366         370 GRGECFGLLGLNGAGKTTTFKMLTGAIKP-TSGNAY  404 (566)
Q Consensus       370 ~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~-~~G~i~  404 (566)
                      ++|++++|+||||||||||+++|++.+++ ..+.+.
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~   41 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSIS   41 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCC
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEe
Confidence            58999999999999999999999999887 344443

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=97.91  E-value=7.2e-07  Score=90.18  Aligned_cols=63  Identities=10%  Similarity=0.100  Sum_probs=46.0

Q ss_pred             CChhHHHHHHHHHHHc--CCCCEEEEeCCCCCCCHHH-HHHHHHHHHHHHhC-Cc--EEEEEccCHHHHHhhCCEE
Q psy7366         478 LSGGNKRKLSTAIALL--GNPPLIFLDEPTSGMDPGA-RRFLWTCIERAVSE-GR--CVILTSHNMEECEALCTKL  547 (566)
Q Consensus       478 LSgGqkqrv~la~al~--~~p~lllLDEPt~gLD~~~-~~~l~~~l~~~~~~-g~--tvl~vsHd~~~~~~~~drv  547 (566)
                      +|.|++   .+++.+.  ..|.++++    |.+|... +..+.+.+.++.+. |.  .+.+++|+-+.+..++|.+
T Consensus       101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i  169 (301)
T 1ega_A          101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIV  169 (301)
T ss_dssp             CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHH
T ss_pred             CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHH
Confidence            888886   4566666  78889988    8999876 67788888888764 53  5667777776666666554

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=97.91  E-value=5.5e-05  Score=80.76  Aligned_cols=99  Identities=8%  Similarity=-0.004  Sum_probs=69.1

Q ss_pred             HHHHHHHHHHcCCCcccccccccCChhHHHHHHHHHHHh--CCCCEEEeeCCCCCCCH--------HHHHHHHHHHHHHH
Q psy7366          68 NTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALL--GNPPLIFLDEPTSGMDP--------GARRFLWTCIERAV  137 (566)
Q Consensus        68 ~~~~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~--~~p~vLlLDEPt~~LD~--------~~~~~l~~~l~~l~  137 (566)
                      +.++.+.++.++.....-.....+|.++.+  +.++.+.  .+|+++|+|+++...++        ....++.+.|+.++
T Consensus       273 ~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lA  350 (454)
T 2r6a_A          273 WGKLTMAMGSLSNAGIYIDDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALA  350 (454)
T ss_dssp             HHHHHHHHHHHHSSCEEEECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCEEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHH
Confidence            345556666554433222234578999876  5556665  78999999999998843        34466667777775


Q ss_pred             h-CCCEEEEecC---------C--hh--------HHHhhcCEEEEEeCCEE
Q psy7366         138 S-EGRCVILTSH---------N--ME--------ECEALCTKLTIMVNGQF  168 (566)
Q Consensus       138 ~-~g~tviiisH---------~--~~--------~~~~~~d~i~vl~~G~i  168 (566)
                      + .|++||+++|         +  +.        .+...||.|++|+.++.
T Consensus       351 ke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~  401 (454)
T 2r6a_A          351 RELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY  401 (454)
T ss_dssp             HHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred             HHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence            4 4999999999         2  22        57788999999987764

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=97.91  E-value=1.6e-06  Score=92.35  Aligned_cols=43  Identities=12%  Similarity=0.288  Sum_probs=36.9

Q ss_pred             CCCCEEEEeCCCCCCCH-HHHHHHHHHHHHHHhCCcEEEEEccC
Q psy7366         494 GNPPLIFLDEPTSGMDP-GARRFLWTCIERAVSEGRCVILTSHN  536 (566)
Q Consensus       494 ~~p~lllLDEPt~gLD~-~~~~~l~~~l~~~~~~g~tvl~vsHd  536 (566)
                      .+|++|++||+..-.+. ..+..++..+..+.+.|+.||++||+
T Consensus       193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~  236 (440)
T 2z4s_A          193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR  236 (440)
T ss_dssp             TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred             CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence            48999999999876654 67888999998887778999999997

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=97.90  E-value=1.5e-05  Score=81.02  Aligned_cols=131  Identities=11%  Similarity=0.202  Sum_probs=78.8

Q ss_pred             ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHH
Q psy7366         360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREH  439 (566)
Q Consensus       360 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~  439 (566)
                      ..|+.+.--+.+|+++.|.|++|+|||||...++...-. .|                 ..+.|+.-+      ++..+.
T Consensus        56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g-----------------~~vl~~slE------~s~~~l  111 (315)
T 3bh0_A           56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-ND-----------------DVVNLHSLE------MGKKEN  111 (315)
T ss_dssp             HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TT-----------------CEEEEEESS------SCHHHH
T ss_pred             HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC-----------------CeEEEEECC------CCHHHH
Confidence            356666656899999999999999999998877642110 11                 135565432      455443


Q ss_pred             HHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy7366         440 LEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTC  519 (566)
Q Consensus       440 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~  519 (566)
                      ..-..               .....+.+....+.. ..||.++.+|+..|...+.++++++.|+|...     ...+...
T Consensus       112 ~~R~~---------------~~~~~i~~~~l~~~~-~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~-----~~~i~~~  170 (315)
T 3bh0_A          112 IKRLI---------------VTAGSINAQKIKAAR-RDFASEDWGKLSMAIGEISNSNINIFDKAGQS-----VNYIWSK  170 (315)
T ss_dssp             HHHHH---------------HHHTTCCHHHHHSCH-HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB-----HHHHHHH
T ss_pred             HHHHH---------------HHHcCCCHHHHhcCC-CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC-----HHHHHHH
Confidence            22111               111111111111111 23888999999988888888889999988643     3345555


Q ss_pred             HHHHHhC-CcE--EEEEcc
Q psy7366         520 IERAVSE-GRC--VILTSH  535 (566)
Q Consensus       520 l~~~~~~-g~t--vl~vsH  535 (566)
                      +++++++ |..  +|+|-|
T Consensus       171 i~~l~~~~~~~~~lVVID~  189 (315)
T 3bh0_A          171 TRQTKRKNPGKRVIVMIDY  189 (315)
T ss_dssp             HHHHHHTSSSCCEEEEEEC
T ss_pred             HHHHHHhcCCCCeEEEEeC
Confidence            6666544 666  777644

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=97.89  E-value=1.3e-07  Score=102.39  Aligned_cols=60  Identities=13%  Similarity=0.173  Sum_probs=49.2

Q ss_pred             ccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE--ecCChhHHHhhcC
Q psy7366          87 EVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL--TSHNMEECEALCT  158 (566)
Q Consensus        87 ~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii--isH~~~~~~~~~d  158 (566)
                      ....+|+||+||.++|.          + | |+||||.+...+++.|.++.+.|.|+++  +||+++++...|+
T Consensus       397 ~~~~~s~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g  458 (511)
T 2oap_1          397 QTMWVRGNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLG  458 (511)
T ss_dssp             EEEEESSSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHT
T ss_pred             EEEEEeCCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcC
Confidence            44568999999877651          1 7 9999999988888888877667889985  9999999998885

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.87  E-value=9.9e-07  Score=84.74  Aligned_cols=57  Identities=21%  Similarity=0.202  Sum_probs=44.3

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHCCC---CCCccEEEE--------cCccCCC--chHHhcCceEEEecCC
Q psy7366         372 GECFGLLGLNGAGKTTTFKMLTGAI---KPTSGNAYV--------MNHSIRD--SMDLVRSYIGYCPQFD  428 (566)
Q Consensus       372 Ge~~~l~G~NGsGKSTLl~~i~G~~---~~~~G~i~~--------~g~~~~~--~~~~~~~~i~~v~q~~  428 (566)
                      +.+++|+||+||||||+.++|++.+   .++.|.+..        .|.++..  ....+++.+++++|++
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   74 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST   74 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence            5689999999999999999998766   678898877        6666542  2334566788888863

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.86  E-value=4.7e-08  Score=100.55  Aligned_cols=46  Identities=22%  Similarity=0.257  Sum_probs=39.1

Q ss_pred             CcceeeeeeEEEeCCcE--EEEEcCCCCcHHHHHHHHHCCCCCCccEE
Q psy7366         358 TKPAVNQISFGVGRGEC--FGLLGLNGAGKTTTFKMLTGAIKPTSGNA  403 (566)
Q Consensus       358 ~~~~l~~isl~i~~Ge~--~~l~G~NGsGKSTLl~~i~G~~~~~~G~i  403 (566)
                      ...+++.++..+..|++  +.+.||+|+||||+++++++.+.+..+.+
T Consensus        30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~   77 (340)
T 1sxj_C           30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSN   77 (340)
T ss_dssp             CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHH
T ss_pred             cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccc
Confidence            45578888888999998  99999999999999999999876665543

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.83  E-value=2.1e-07  Score=86.08  Aligned_cols=123  Identities=13%  Similarity=0.000  Sum_probs=71.2

Q ss_pred             CCcchHHHHHhccccCC---C---ccCCCCCc------ccccc-ccee----EEcCCCCCCCCCCHHHHHHHHHHhcCCC
Q psy7366           1 MGLTTTPKRVVTLLLTT---Q---KVPGSNPT------IDKNL-SYIG----YCPQFDALNDRLTPREHLEFYSRVRNVP   63 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~---~---~~~~~~~~------~~~~~-~~ig----~v~Q~~~l~~~~tv~e~l~~~~~~~~~~   63 (566)
                      +||||+++.+++.+-+.   .   .+.+....      .+..+ ..+|    +++|++.++-    .+         + +
T Consensus        13 sGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i----~~---------~-~   78 (171)
T 2f1r_A           13 SGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFI----RR---------V-S   78 (171)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEE----EE---------C-C
T ss_pred             CCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEE----ec---------C-C
Confidence            48999999999998764   1   22222201      11212 2467    8899876551    00         0 0


Q ss_pred             hhhHHHHHHHHHHH-c-CCCcccccccccCChhHHHHHHHHHHHhCCCCEE-------EeeCCC---CCCCHHHHHHHHH
Q psy7366          64 SVLLNTIVNESLNK-F-ALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLI-------FLDEPT---SGMDPGARRFLWT  131 (566)
Q Consensus        64 ~~~~~~~~~~~l~~-~-gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vL-------lLDEPt---~~LD~~~~~~l~~  131 (566)
                       .+....+.++++. + |++...   ...|||||+||++||||++.+|++.       +=|.|.   -.+|....+.+.+
T Consensus        79 -~~~~a~l~~~i~~~l~g~dt~i---~EglSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~~~~~~~~a~  154 (171)
T 2f1r_A           79 -EEEGNDLDWIYERYLSDYDLVI---TEGFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFRRDEVERIAE  154 (171)
T ss_dssp             -HHHHTCHHHHHHHHTTTCSEEE---EESCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEECTTCHHHHHH
T ss_pred             -hhhhhCHHHHHHhhCCCCCEEE---ECCcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCcccCcccHHHHHH
Confidence             0011134455554 4 333222   2349999999999999999999874       235553   2355667788888


Q ss_pred             HHHHHHhCCC
Q psy7366         132 CIERAVSEGR  141 (566)
Q Consensus       132 ~l~~l~~~g~  141 (566)
                      +|.+...+|.
T Consensus       155 ~i~~~~~~~~  164 (171)
T 2f1r_A          155 FILSLLREGG  164 (171)
T ss_dssp             HHHHHHTC--
T ss_pred             HHHHHHhccC
Confidence            8877666664

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=97.81  E-value=6.8e-06  Score=84.88  Aligned_cols=29  Identities=24%  Similarity=0.431  Sum_probs=25.2

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHHCCCCC
Q psy7366         370 GRGECFGLLGLNGAGKTTTFKMLTGAIKP  398 (566)
Q Consensus       370 ~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~  398 (566)
                      ..+..+.|.||+|+|||||++.+++...+
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~   71 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHK   71 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence            45678999999999999999999987654

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.81  E-value=1.1e-05  Score=76.37  Aligned_cols=31  Identities=26%  Similarity=0.261  Sum_probs=28.2

Q ss_pred             EEEeCCcEEEEEcCCCCcHHHHHHHHHCCCC
Q psy7366         367 FGVGRGECFGLLGLNGAGKTTTFKMLTGAIK  397 (566)
Q Consensus       367 l~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~  397 (566)
                      -++.+|.+++|+|++||||||+.++|++.++
T Consensus        16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~   46 (207)
T 2qt1_A           16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP   46 (207)
T ss_dssp             CCSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred             ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            3678899999999999999999999999864

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=97.77  E-value=7.8e-07  Score=95.77  Aligned_cols=97  Identities=10%  Similarity=0.059  Sum_probs=66.3

Q ss_pred             hhhHHHHHHHHHHHcCCCcccc---cccccCChhHHHHH----------HHHHHHhCCCC-EEEeeCCCCCCCHHHHHHH
Q psy7366          64 SVLLNTIVNESLNKFALGHYSD---REVRTLSGGNKRKL----------STAIALLGNPP-LIFLDEPTSGMDPGARRFL  129 (566)
Q Consensus        64 ~~~~~~~~~~~l~~~gl~~~~~---~~~~~LSgG~kqrl----------~iA~al~~~p~-vLlLDEPt~~LD~~~~~~l  129 (566)
                      ..++++|. +++...|+....+   +....+|+||+|+.          .+|+++...|. ++++||+++.+|.. ...+
T Consensus       240 ~~EmerR~-~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~-~~~~  317 (512)
T 2ius_A          240 VNEMERRY-KLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTV-GKKV  317 (512)
T ss_dssp             HHHHHHHH-HHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHH-HHHH
T ss_pred             HHHHHHHH-HHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhh-hHHH
Confidence            35666675 7788899875432   22346899998753          35666778898 89999999999843 3445


Q ss_pred             HHHHHHHH----hCCCEEEEecCChh-------HHHhhcCEEEE
Q psy7366         130 WTCIERAV----SEGRCVILTSHNME-------ECEALCTKLTI  162 (566)
Q Consensus       130 ~~~l~~l~----~~g~tviiisH~~~-------~~~~~~d~i~v  162 (566)
                      .+.|.++.    +.|.++|++||+.+       ....+.+||++
T Consensus       318 ~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~l  361 (512)
T 2ius_A          318 EELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAF  361 (512)
T ss_dssp             HHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEE
T ss_pred             HHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEE
Confidence            55555443    33789999999987       34567777754

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=97.74  E-value=2.8e-05  Score=80.10  Aligned_cols=76  Identities=14%  Similarity=0.103  Sum_probs=53.2

Q ss_pred             HHHHHHHHHhC--CCCEEEeeCCCCCC----------CH---HHHHHHHHHHHHH----HhCCCEEEEecCChhH-----
Q psy7366          97 RKLSTAIALLG--NPPLIFLDEPTSGM----------DP---GARRFLWTCIERA----VSEGRCVILTSHNMEE-----  152 (566)
Q Consensus        97 qrl~iA~al~~--~p~vLlLDEPt~~L----------D~---~~~~~l~~~l~~l----~~~g~tviiisH~~~~-----  152 (566)
                      +-+.++++++.  +|+++|+|||++.+          |+   ...+.+.+.++++    ++.|.+||+++|....     
T Consensus       126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~  205 (349)
T 2zr9_A          126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF  205 (349)
T ss_dssp             HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred             HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence            45667888875  49999999999998          33   1222444555554    4569999999997542     


Q ss_pred             -----------HHhhcCEEEEEeCCEEEEec
Q psy7366         153 -----------CEALCTKLTIMVNGQFTCLG  172 (566)
Q Consensus       153 -----------~~~~~d~i~vl~~G~i~~~g  172 (566)
                                 +..+||.++.++.++++-.|
T Consensus       206 ~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g  236 (349)
T 2zr9_A          206 GSPETTTGGKALKFYASVRLDVRRIETLKDG  236 (349)
T ss_dssp             ----CCSSHHHHHHHCSEEEEEEEEEEECSS
T ss_pred             CCCcccCCchHhhhccceEEEEEEeeeeecC
Confidence                       56789999999988766433

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=97.68  E-value=0.00021  Score=76.01  Aligned_cols=165  Identities=12%  Similarity=0.015  Sum_probs=92.6

Q ss_pred             eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHH
Q psy7366         361 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHL  440 (566)
Q Consensus       361 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l  440 (566)
                      .|+.+.--+++|+++.|.|++|+|||||...++.......|.                 .+.|+.-+      ++..+..
T Consensus       189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~-----------------~vl~~slE------~~~~~l~  245 (444)
T 2q6t_A          189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGV-----------------GVGIYSLE------MPAAQLT  245 (444)
T ss_dssp             HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCC-----------------CEEEEESS------SCHHHHH
T ss_pred             hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCC-----------------eEEEEECC------CCHHHHH
Confidence            466666558999999999999999999998877543321220                 13333221      2222211


Q ss_pred             HH-HHHhcC----------CCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHc--CCCCEEEEeCCCCC
Q psy7366         441 EF-YSRVRN----------VPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALL--GNPPLIFLDEPTSG  507 (566)
Q Consensus       441 ~~-~~~~~~----------~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~--~~p~lllLDEPt~g  507 (566)
                      .- .....+          +. .....++...+..+.-.+..-.....+|..+.  ...++.+.  .+++++++|..+.-
T Consensus       246 ~R~~~~~~~i~~~~l~~g~l~-~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~l--~~~~~~l~~~~~~~lIvID~l~~~  322 (444)
T 2q6t_A          246 LRMMCSEARIDMNRVRLGQLT-DRDFSRLVDVASRLSEAPIYIDDTPDLTLMEV--RARARRLVSQNQVGLIIIDYLQLM  322 (444)
T ss_dssp             HHHHHHHTTCCTTTCCGGGCC-HHHHHHHHHHHHHHHTSCEEEECCTTCBHHHH--HHHHHHHHHHSCCCEEEEECGGGC
T ss_pred             HHHHHHHcCCCHHHHhCCCCC-HHHHHHHHHHHHHHhcCCEEEECCCCCCHHHH--HHHHHHHHHHcCCCEEEEcChhhc
Confidence            10 000000          11 11223333344433222222122345666654  33455554  58999999998754


Q ss_pred             CCH----------HHHHHHHHHHHHHHhC-CcEEEEEccCH-------------H------HHHhhCCEEEEEE
Q psy7366         508 MDP----------GARRFLWTCIERAVSE-GRCVILTSHNM-------------E------ECEALCTKLTIMV  551 (566)
Q Consensus       508 LD~----------~~~~~l~~~l~~~~~~-g~tvl~vsHd~-------------~------~~~~~~drv~~l~  551 (566)
                      ...          .....+...|+.++++ +++||+++|--             .      .+...||.|++|+
T Consensus       323 ~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~  396 (444)
T 2q6t_A          323 SGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIY  396 (444)
T ss_dssp             BCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEE
T ss_pred             CCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEe
Confidence            432          1224566667777665 99999999821             1      2467899999985

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=97.66  E-value=4.4e-06  Score=85.87  Aligned_cols=52  Identities=19%  Similarity=0.174  Sum_probs=45.7

Q ss_pred             cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccC
Q psy7366         359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI  410 (566)
Q Consensus       359 ~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~  410 (566)
                      ..+++++++.+.+|.+++|+|+||+|||||++.|+|.+.+..|+|.+-+.+.
T Consensus        43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~   94 (341)
T 2p67_A           43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP   94 (341)
T ss_dssp             HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence            4578888999999999999999999999999999999888888887766554

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=97.64  E-value=0.00057  Score=70.37  Aligned_cols=143  Identities=13%  Similarity=0.108  Sum_probs=78.0

Q ss_pred             EeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcC
Q psy7366         369 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRN  448 (566)
Q Consensus       369 i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~  448 (566)
                      +++|+++.|.|++|+|||||...++.......+                  .+.|+.-+..+.+      .  ...    
T Consensus        60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~------------------~vlyid~E~s~~~------~--~a~----  109 (356)
T 1u94_A           60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK------------------TCAFIDAEHALDP------I--YAR----  109 (356)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTC------------------CEEEEESSCCCCH------H--HHH----
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCC------------------eEEEEeCCCCccH------H--HHH----
Confidence            789999999999999999999777643321111                  2445544322110      0  000    


Q ss_pred             CCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHc--CCCCEEEEeCCCCCCCHH------------HH-
Q psy7366         449 VPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALL--GNPPLIFLDEPTSGMDPG------------AR-  513 (566)
Q Consensus       449 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~--~~p~lllLDEPt~gLD~~------------~~-  513 (566)
                                     .+++.. .+-.+..-+.+ .+-..+++.++  .+++++++|+++.-....            .+ 
T Consensus       110 ---------------~~g~~~-~~l~i~~~~~~-e~~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~  172 (356)
T 1u94_A          110 ---------------KLGVDI-DNLLCSQPDTG-EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAA  172 (356)
T ss_dssp             ---------------HTTCCG-GGCEEECCSSH-HHHHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHH
T ss_pred             ---------------HcCCCh-hheeeeCCCCH-HHHHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHH
Confidence                           111110 00000011112 23344555553  689999999998866311            11 


Q ss_pred             HHHHHHHHHH---H-hCCcEEEEEccCHH----------------HHHhhCCEEEEEECCEEEEe
Q psy7366         514 RFLWTCIERA---V-SEGRCVILTSHNME----------------ECEALCTKLTIMVNGQFTCL  558 (566)
Q Consensus       514 ~~l~~~l~~~---~-~~g~tvl~vsHd~~----------------~~~~~~drv~~l~~G~i~~~  558 (566)
                      +.+.+.++++   + +.+.+||+++|-..                .+..+||-++.++..+....
T Consensus       173 r~~~~~l~~L~~~a~~~~~~VI~~nq~~~~~~~~fg~~~~~~gG~~l~~~advrl~l~r~~~~k~  237 (356)
T 1u94_A          173 RMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKE  237 (356)
T ss_dssp             HHHHHHHHHHHHHHHHHTCEEEEEEC--------------CTTCSHHHHHCSEEEEEEEEEEEES
T ss_pred             HHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCCcceeeeccEEEEEEEeeeecc
Confidence            2334444443   3 34999999998543                24567898888876654433

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=97.64  E-value=1.7e-05  Score=82.09  Aligned_cols=113  Identities=18%  Similarity=0.104  Sum_probs=74.3

Q ss_pred             CCcchHHHHHhccccCCCc---cCCCCC-cccccccceeEEc-CCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQK---VPGSNP-TIDKNLSYIGYCP-QFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL   75 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~---~~~~~~-~~~~~~~~ig~v~-Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l   75 (566)
                      .||||++|++++.+-+++.   +.+... ........+++++ |++.+                                
T Consensus       186 sGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~--------------------------------  233 (361)
T 2gza_A          186 SGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKE--------------------------------  233 (361)
T ss_dssp             SCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC-------------------------------------
T ss_pred             CCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCcccc--------------------------------
Confidence            5999999999999876541   111110 0111234577887 55321                                


Q ss_pred             HHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHHh
Q psy7366          76 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEA  155 (566)
Q Consensus        76 ~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~  155 (566)
                                    .++++..++-.|+.++..+|+.+++|||..       .+..++|+.+.....|++.++|..+ +..
T Consensus       234 --------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~~l~~l~~g~~~~l~t~H~~~-~~~  291 (361)
T 2gza_A          234 --------------EENAPVTAATLLRSCLRMKPTRILLAELRG-------GEAYDFINVAASGHGGSITSCHAGS-CEL  291 (361)
T ss_dssp             -------------------CCHHHHHHHHTTSCCSEEEESCCCS-------THHHHHHHHHHTTCCSCEEEEECSS-HHH
T ss_pred             --------------ccccccCHHHHHHHHHhcCCCEEEEcCchH-------HHHHHHHHHHhcCCCeEEEEECCCC-HHH
Confidence                          013444678889999999999999999986       3456677776443457899999965 777


Q ss_pred             hcCEEEEEeCCE
Q psy7366         156 LCTKLTIMVNGQ  167 (566)
Q Consensus       156 ~~d~i~vl~~G~  167 (566)
                      .+||+..|..|.
T Consensus       292 ~~~Rl~~l~~~~  303 (361)
T 2gza_A          292 TFERLALMVLQN  303 (361)
T ss_dssp             HHHHHHHHHTTS
T ss_pred             HHHHHHHHHhcc
Confidence            899999887764

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=97.64  E-value=2.4e-06  Score=87.53  Aligned_cols=135  Identities=14%  Similarity=0.074  Sum_probs=83.9

Q ss_pred             CCcchHHHHHhccc----cC--CCccC-CCCCcc---cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCC----hhh
Q psy7366           1 MGLTTTPKRVVTLL----LT--TQKVP-GSNPTI---DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVP----SVL   66 (566)
Q Consensus         1 ~Gktt~~k~~~~~~----~~--~~~~~-~~~~~~---~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~----~~~   66 (566)
                      .||||++|++.+.+    .+  |.... +.....   ......|+++.|.+.+.+  ++.|++....+..+.+    ...
T Consensus        62 ~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~  139 (334)
T 1in4_A           62 LGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNK--AVEELLYSAIEDFQIDIMIGKGP  139 (334)
T ss_dssp             SSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEETGGGCCH--HHHHHHHHHHHTSCCCC------
T ss_pred             CcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcchhhcCH--HHHHHHHHHHHhcccceeeccCc
Confidence            59999999999987    21  11110 000000   011346999999887765  7888885544433321    112


Q ss_pred             HHHHHHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEE
Q psy7366          67 LNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS-EGRCVIL  145 (566)
Q Consensus        67 ~~~~~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvii  145 (566)
                      ..+.+...+..+++.. ..+.+..||+|++||+.++                .+||+.+.+++.++|++..+ .|     
T Consensus       140 ~~~~i~~~l~~~~li~-at~~~~~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~~~-----  197 (334)
T 1in4_A          140 SAKSIRIDIQPFTLVG-ATTRSGLLSSPLRSRFGII----------------LELDFYTVKELKEIIKRAASLMD-----  197 (334)
T ss_dssp             ---------CCCEEEE-EESCGGGSCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHHHHTT-----
T ss_pred             ccccccccCCCeEEEE-ecCCcccCCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHHHHcC-----
Confidence            2344555566666644 5677889999999998655                88999999999999998754 34     


Q ss_pred             ecCChhHHHhhcCE
Q psy7366         146 TSHNMEECEALCTK  159 (566)
Q Consensus       146 isH~~~~~~~~~d~  159 (566)
                      ++|+.+.+..+|++
T Consensus       198 ~~~~~~~~~~ia~~  211 (334)
T 1in4_A          198 VEIEDAAAEMIAKR  211 (334)
T ss_dssp             CCBCHHHHHHHHHT
T ss_pred             CCcCHHHHHHHHHh
Confidence            47888888888775

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=97.62  E-value=2.7e-05  Score=70.06  Aligned_cols=30  Identities=20%  Similarity=0.377  Sum_probs=24.9

Q ss_pred             eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHH
Q psy7366         363 NQISFGVGRGECFGLLGLNGAGKTTTFKMLT  393 (566)
Q Consensus       363 ~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~  393 (566)
                      ++.++++.+| +.+|+|||||||||++.+|.
T Consensus        15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred             cceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence            4455666655 99999999999999999987

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=97.61  E-value=7e-06  Score=89.73  Aligned_cols=49  Identities=20%  Similarity=0.219  Sum_probs=42.6

Q ss_pred             cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCc
Q psy7366         359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH  408 (566)
Q Consensus       359 ~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~  408 (566)
                      ..++.++++++ +|++++|+||||+|||||+++|++.+.+..|.|.+.|.
T Consensus        96 ~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~  144 (543)
T 3m6a_A           96 YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGV  144 (543)
T ss_dssp             HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-
T ss_pred             HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEeccc
Confidence            34677778777 89999999999999999999999999988899887774

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.61  E-value=1.8e-05  Score=72.29  Aligned_cols=34  Identities=24%  Similarity=0.268  Sum_probs=28.3

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCc
Q psy7366         371 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH  408 (566)
Q Consensus       371 ~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~  408 (566)
                      .|.+++|+||||||||||+++|++.+.+    +.+++.
T Consensus         3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~d   36 (173)
T 1kag_A            3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDSD   36 (173)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEecc
Confidence            4678999999999999999999998754    556643

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=97.60  E-value=0.00044  Score=66.75  Aligned_cols=29  Identities=34%  Similarity=0.378  Sum_probs=24.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCCCCCccE
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAIKPTSGN  402 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~~~~~G~  402 (566)
                      .++|+|++|+|||||++.|+|...+.++.
T Consensus        31 ~i~lvG~~g~GKStlin~l~g~~~~~~~~   59 (239)
T 3lxx_A           31 RIVLVGKTGAGKSATGNSILGRKVFHSGT   59 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSCCSCC--
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCcCccCC
Confidence            57899999999999999999987766653

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=97.58  E-value=0.00036  Score=69.61  Aligned_cols=59  Identities=17%  Similarity=0.196  Sum_probs=37.7

Q ss_pred             hhHHHHHHHHHHHcCCCCEEEEeCCCCCCCH----------HHHHHHHHHHHHHHh----CCcEEEEEccCHH
Q psy7366         480 GGNKRKLSTAIALLGNPPLIFLDEPTSGMDP----------GARRFLWTCIERAVS----EGRCVILTSHNME  538 (566)
Q Consensus       480 gGqkqrv~la~al~~~p~lllLDEPt~gLD~----------~~~~~l~~~l~~~~~----~g~tvl~vsHd~~  538 (566)
                      ++++.+..+..+...+|.+|++||+.+-++.          .....+...+.....    .+..||.+|++.+
T Consensus        98 ~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~  170 (297)
T 3b9p_A           98 GEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQ  170 (297)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGG
T ss_pred             HHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChh
Confidence            4566777777888889999999999776553          223334444444321    2356778888753

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=97.56  E-value=5.9e-06  Score=88.16  Aligned_cols=132  Identities=11%  Similarity=0.087  Sum_probs=79.7

Q ss_pred             CCcchHHHHHhccccCCC-c--cCCCCCccc---------ccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ-K--VPGSNPTID---------KNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLN   68 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~-~--~~~~~~~~~---------~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~   68 (566)
                      +|||||++.+++++.+.. .  +.+.+....         ....+|+|++|++.+++.+++.+++.++.. .+.+.-   
T Consensus       304 SGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~a~~-~~~DvV---  379 (503)
T 2yhs_A          304 VGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA-RNIDVL---  379 (503)
T ss_dssp             SSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHHHHH-TTCSEE---
T ss_pred             ccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHHHHh-cCCCEE---
Confidence            599999999999987533 1  222222111         123469999999888888899999987643 222210   


Q ss_pred             HHHHHHHHHcCCCcccccccccCChhHHHHHHHHHHHh-CCCC-EEEeeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEE
Q psy7366          69 TIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALL-GNPP-LIFLDEPTSGMDPGARRFLWTCIERAV-SEGRCVIL  145 (566)
Q Consensus        69 ~~~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~-~~p~-vLlLDEPt~~LD~~~~~~l~~~l~~l~-~~g~tvii  145 (566)
                           +++..|........+.+|    +|++.+++++. ..|+ +||...||+|.|..      +.++.+. ..|.|.|+
T Consensus       380 -----LIDTaGrl~~~~~lm~EL----~kiv~iar~l~~~~P~evLLvLDattGq~al------~~ak~f~~~~~itgvI  444 (503)
T 2yhs_A          380 -----IADTAGRLQNKSHLMEEL----KKIVRVMKKLDVEAPHEVMLTIDASTGQNAV------SQAKLFHEAVGLTGIT  444 (503)
T ss_dssp             -----EECCCCSCCCHHHHHHHH----HHHHHHHHTTCTTCSSEEEEEEEGGGTHHHH------HHHHHHHHHTCCSEEE
T ss_pred             -----EEeCCCccchhhhHHHHH----HHHHHHHHHhccCCCCeeEEEecCcccHHHH------HHHHHHHhhcCCCEEE
Confidence                 123334332222233444    47888888774 4574 44444488886544      2344443 35889999


Q ss_pred             ecCChhH
Q psy7366         146 TSHNMEE  152 (566)
Q Consensus       146 isH~~~~  152 (566)
                      +|| ++.
T Consensus       445 lTK-LD~  450 (503)
T 2yhs_A          445 LTK-LDG  450 (503)
T ss_dssp             EEC-GGG
T ss_pred             EEc-CCC
Confidence            999 444

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.55  E-value=1.6e-05  Score=73.35  Aligned_cols=40  Identities=35%  Similarity=0.313  Sum_probs=33.1

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHHCCCCCCcc--EEEEcCccC
Q psy7366         370 GRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG--NAYVMNHSI  410 (566)
Q Consensus       370 ~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G--~i~~~g~~~  410 (566)
                      .+|++++|+|++||||||+.++|++.+++ .|  .|.+++..+
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~   44 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI   44 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHH
Confidence            47899999999999999999999998765 56  666776554

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=97.53  E-value=2e-05  Score=81.15  Aligned_cols=42  Identities=21%  Similarity=0.199  Sum_probs=36.4

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCC
Q psy7366         370 GRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  411 (566)
Q Consensus       370 ~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~  411 (566)
                      +++.+++|+|++|||||||++.|+|.+++..|+|.+.+.+..
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~  113 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPS  113 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCC
Confidence            457799999999999999999999999888899888776553

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=97.51  E-value=3.6e-05  Score=74.41  Aligned_cols=48  Identities=13%  Similarity=0.143  Sum_probs=34.5

Q ss_pred             eeeeeeEEEe---CCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCcc
Q psy7366         361 AVNQISFGVG---RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS  409 (566)
Q Consensus       361 ~l~~isl~i~---~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~  409 (566)
                      -|.++||.+.   +|.+++|.|++||||||+++.|+..+.+ .+.+.....+
T Consensus        12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~~~p   62 (229)
T 4eaq_A           12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTREP   62 (229)
T ss_dssp             --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEECTT
T ss_pred             CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceeecCC
Confidence            4677777776   9999999999999999999999999887 6777655444

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=97.39  E-value=2.1e-06  Score=88.11  Aligned_cols=46  Identities=22%  Similarity=0.377  Sum_probs=40.7

Q ss_pred             cccCChhHHHHHHHHHHHhC------CCCEEEeeCCCCCCCHHHHHHHHHHHHHHH
Q psy7366          88 VRTLSGGNKRKLSTAIALLG------NPPLIFLDEPTSGMDPGARRFLWTCIERAV  137 (566)
Q Consensus        88 ~~~LSgG~kqrl~iA~al~~------~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~  137 (566)
                      ..++|+|++|++..|.+++.      +|+++.    ||++|+.++++|++.|.++.
T Consensus       208 ~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~  259 (337)
T 2qm8_A          208 GERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHR  259 (337)
T ss_dssp             CHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHH
Confidence            35689999999999999987      688886    99999999999999998864

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.38  E-value=0.00031  Score=70.57  Aligned_cols=29  Identities=24%  Similarity=0.307  Sum_probs=25.5

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         368 GVGRGECFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       368 ~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      .+.++..+.|.||+|+|||||.++|++..
T Consensus        45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~   73 (301)
T 3cf0_A           45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC   73 (301)
T ss_dssp             CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred             CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence            35677889999999999999999999865

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=97.37  E-value=5.8e-06  Score=87.20  Aligned_cols=108  Identities=10%  Similarity=-0.013  Sum_probs=67.7

Q ss_pred             CCcchHHHHHhccccCCC--ccCCCCCcc--------cccccceeEEc---------CCCCCC--CC----CCHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ--KVPGSNPTI--------DKNLSYIGYCP---------QFDALN--DR----LTPREHLEF   55 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~--~~~~~~~~~--------~~~~~~ig~v~---------Q~~~l~--~~----~tv~e~l~~   55 (566)
                      .|||||++++++.+.+..  .+....+..        ......+|+.+         |+|..+  ..    .|+.+++.+
T Consensus       178 SGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a  257 (418)
T 1p9r_A          178 SGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQA  257 (418)
T ss_dssp             SCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHH
Confidence            599999999999987543  111111110        01123456644         998763  33    588898876


Q ss_pred             HHHhc----CCChhhHHHHHHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEE
Q psy7366          56 YSRVR----NVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIF  113 (566)
Q Consensus        56 ~~~~~----~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLl  113 (566)
                      ...-.    .+....... +.+.|..+|++..  ..+.+|||||+||  ||++|+.+|++..
T Consensus       258 ~~tGhlv~~tlh~~~~~~-~i~rL~~lgl~~~--~~~~~LSgg~~QR--LaraL~~~p~~~~  314 (418)
T 1p9r_A          258 SLTGHLVMSTLHTNTAVG-AVTRLRDMGIEPF--LISSSLLGVLAQR--LVRTLCPDCKEPY  314 (418)
T ss_dssp             HHTTCEEEEEECCSSSHH-HHHHHHHHTCCHH--HHHHHEEEEEEEE--EEEEECTTTCEEE
T ss_pred             HHhCCCcccccchhhHHH-HHHHHHHcCCcHH--HHHHHHHHHHHHH--hhhhhcCCCCccC
Confidence            53110    011111222 2335677888754  3788999999999  9999999999876

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=97.34  E-value=0.00058  Score=69.24  Aligned_cols=27  Identities=22%  Similarity=0.303  Sum_probs=24.5

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHHC
Q psy7366         368 GVGRGECFGLLGLNGAGKTTTFKMLTG  394 (566)
Q Consensus       368 ~i~~Ge~~~l~G~NGsGKSTLl~~i~G  394 (566)
                      -+++|+++.|.||+|+|||||...++.
T Consensus        94 Gl~~g~i~~i~G~~gsGKT~la~~la~  120 (322)
T 2i1q_A           94 GLESQSVTEFAGVFGSGKTQIMHQSCV  120 (322)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999999987774

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=97.33  E-value=9.8e-05  Score=78.47  Aligned_cols=159  Identities=11%  Similarity=0.079  Sum_probs=76.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCCC------------CCccEEEEcCccCC--CchHHhcCceEEEecCCCCCCCCCHHHH
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAIK------------PTSGNAYVMNHSIR--DSMDLVRSYIGYCPQFDALNDRLTPREH  439 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~~------------~~~G~i~~~g~~~~--~~~~~~~~~i~~v~q~~~l~~~~tv~e~  439 (566)
                      .++|+|+||+|||||++.|+|...            +.+|.+.++|.++.  ... -.++..++.+|....+..++..++
T Consensus       182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~-G~~~~~~~~~~~~e~~~~~~~~~~  260 (439)
T 1mky_A          182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTA-GLRRKSRVEPRTVEKYSNYRVVDS  260 (439)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCS-CC-----------CCSCCHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECC-CCccccccchhhHHHHHHHHHHHH
Confidence            689999999999999999999864            66799999997542  111 112223444454444444445555


Q ss_pred             HHHHHH------h-cCCCchHHHHHHHHHHHHcCCCCc-cccCcCcCChhH--HHHH--HHHHHHc--CCCCEEEEeCCC
Q psy7366         440 LEFYSR------V-RNVPSVLLNTIVNESLNKFALGHY-SDREVRTLSGGN--KRKL--STAIALL--GNPPLIFLDEPT  505 (566)
Q Consensus       440 l~~~~~------~-~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgGq--kqrv--~la~al~--~~p~lllLDEPt  505 (566)
                      +...-.      . .+..  .....+.+.+...+..-. .--+...+..-+  ...+  .+++.+.  ...+++    ++
T Consensus       261 i~~ad~vllv~d~~~~~~--~~~~~i~~~l~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~  334 (439)
T 1mky_A          261 IEKADVVVIVLDATQGIT--RQDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLI----FT  334 (439)
T ss_dssp             HHHCSEEEEEEETTTCCC--HHHHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEE----EC
T ss_pred             HhhCCEEEEEEeCCCCCC--HHHHHHHHHHHHcCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEE----EE
Confidence            443210      0 1111  122334455555543210 000111111111  1111  3334332  334444    48


Q ss_pred             CCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHH
Q psy7366         506 SGMDPGARRFLWTCIERAVSEGRCVILTSHNMEEC  540 (566)
Q Consensus       506 ~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~  540 (566)
                      |+++-.....+++.+.+...+ .+.-+.|+.++.+
T Consensus       335 SA~~g~gv~~l~~~i~~~~~~-~~~~i~t~~ln~~  368 (439)
T 1mky_A          335 SADKGWNIDRMIDAMNLAYAS-YTTKVPSSAINSA  368 (439)
T ss_dssp             BTTTTBSHHHHHHHHHHHHHH-HTCCCCHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHHHh-hcccCCHHHHHHH
Confidence            888888888888777665432 1122355555443

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=97.31  E-value=3.5e-05  Score=79.34  Aligned_cols=51  Identities=22%  Similarity=0.339  Sum_probs=45.7

Q ss_pred             EEEeeeEEEeCCcCCCcceee--------------eeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         343 LVVKRLFKIYANSKGTKPAVN--------------QISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       343 l~~~~l~~~y~~~~~~~~~l~--------------~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      +.++|++..|+.   .+.+|+              |+.+.+.+|+.++|+||+|+|||||++.|++..
T Consensus       134 i~Fe~ltp~yP~---er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i  198 (422)
T 3ice_A          134 ILFENLTPLHAN---SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI  198 (422)
T ss_dssp             CCTTTSCEESCC---SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred             ceeccccccCCC---CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence            667899999974   567888              899999999999999999999999999999865

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.30  E-value=6.9e-05  Score=78.94  Aligned_cols=48  Identities=23%  Similarity=0.230  Sum_probs=43.5

Q ss_pred             eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC
Q psy7366         363 NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  412 (566)
Q Consensus       363 ~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~  412 (566)
                      ++++|+  +|++++++|+|||||||++..|++.+.+..|+|.+.+.++..
T Consensus        91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r  138 (425)
T 2ffh_A           91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR  138 (425)
T ss_dssp             CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSC
T ss_pred             ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccC
Confidence            677887  899999999999999999999999999988999998877654

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=97.27  E-value=0.00017  Score=67.63  Aligned_cols=25  Identities=24%  Similarity=0.316  Sum_probs=21.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHCCCC
Q psy7366         373 ECFGLLGLNGAGKTTTFKMLTGAIK  397 (566)
Q Consensus       373 e~~~l~G~NGsGKSTLl~~i~G~~~  397 (566)
                      ..+.|.||+|+|||||+++|+....
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~   79 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELA   79 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHH
Confidence            4677999999999999999997654

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=97.27  E-value=0.00053  Score=69.44  Aligned_cols=42  Identities=14%  Similarity=0.138  Sum_probs=32.4

Q ss_pred             CCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEEcc
Q psy7366         494 GNPPLIFLDEPTS-GMDPGARRFLWTCIERAVSEGRCVILTSH  535 (566)
Q Consensus       494 ~~p~lllLDEPt~-gLD~~~~~~l~~~l~~~~~~g~tvl~vsH  535 (566)
                      .++++|++||+.. .-+...+..+...+..+.+.+..+|++|+
T Consensus        97 ~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~  139 (324)
T 1l8q_A           97 KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASD  139 (324)
T ss_dssp             HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred             cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEec
Confidence            4699999999865 33457888899999888777777777765

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=97.25  E-value=4.7e-05  Score=72.32  Aligned_cols=43  Identities=23%  Similarity=0.193  Sum_probs=36.9

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCcc--EEEEcCccC
Q psy7366         368 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG--NAYVMNHSI  410 (566)
Q Consensus       368 ~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G--~i~~~g~~~  410 (566)
                      .+.+|.+++|+|++||||||+.+.|++.+.|..|  .+.+++..+
T Consensus        21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~   65 (211)
T 1m7g_A           21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI   65 (211)
T ss_dssp             HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence            3567899999999999999999999999887788  788876543

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=97.24  E-value=0.00014  Score=68.73  Aligned_cols=30  Identities=20%  Similarity=0.377  Sum_probs=24.4

Q ss_pred             eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHH
Q psy7366         363 NQISFGVGRGECFGLLGLNGAGKTTTFKMLT  393 (566)
Q Consensus       363 ~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~  393 (566)
                      .+.++++.+| +.+|+|||||||||++.+|.
T Consensus        15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred             cceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence            3455666664 99999999999999999885

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.17  E-value=5.9e-05  Score=75.84  Aligned_cols=49  Identities=20%  Similarity=0.116  Sum_probs=42.7

Q ss_pred             ee-eeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC
Q psy7366         363 NQ-ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  412 (566)
Q Consensus       363 ~~-isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~  412 (566)
                      ++ ++|+.+ |.+++++|+||+||||++..|++.+.+..|+|.+.+.+...
T Consensus        89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r  138 (297)
T 1j8m_F           89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYR  138 (297)
T ss_dssp             CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred             ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            45 778766 99999999999999999999999998888899888777644

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=97.16  E-value=0.00027  Score=64.56  Aligned_cols=27  Identities=26%  Similarity=0.359  Sum_probs=23.5

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         370 GRGECFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       370 ~~Ge~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      .+|..++|+|++|+|||||++.++|..
T Consensus         2 ~~~~ki~ivG~~g~GKStLl~~l~~~~   28 (172)
T 2gj8_A            2 SHGMKVVIAGRPNAGKSSLLNALAGRE   28 (172)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            367889999999999999999999865

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=97.15  E-value=0.00033  Score=66.97  Aligned_cols=43  Identities=16%  Similarity=0.211  Sum_probs=29.8

Q ss_pred             CCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHhCCcE-EEEEccC
Q psy7366         494 GNPPLIFLDEPTSG-MDPGARRFLWTCIERAVSEGRC-VILTSHN  536 (566)
Q Consensus       494 ~~p~lllLDEPt~g-LD~~~~~~l~~~l~~~~~~g~t-vl~vsHd  536 (566)
                      .++.+|++||...- -+......+.+++......+.. +|++|+.
T Consensus       103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~  147 (242)
T 3bos_A          103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASA  147 (242)
T ss_dssp             GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESS
T ss_pred             cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCC
Confidence            46899999996542 1233377788888887666654 7777763

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=97.11  E-value=9.8e-05  Score=71.36  Aligned_cols=147  Identities=11%  Similarity=0.026  Sum_probs=74.1

Q ss_pred             EeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcC
Q psy7366         369 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRN  448 (566)
Q Consensus       369 i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~  448 (566)
                      +.+|+.+++.||+||||||++.++........|.               ...++++.+.|......++.+++.....   
T Consensus        73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~---------------~~~~~~l~~~p~~~la~q~~~~~~~~~~---  134 (235)
T 3llm_A           73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR---------------AAECNIVVTQPRRISAVSVAERVAFERG---  134 (235)
T ss_dssp             HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC---------------GGGCEEEEEESSHHHHHHHHHHHHHTTT---
T ss_pred             HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC---------------CCceEEEEeccchHHHHHHHHHHHHHhc---
Confidence            4578999999999999999988764321111110               1134566665543222334444432110   


Q ss_pred             CCchHHHHHHHHHHHHcCC----CCc---cccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCC-CCCHHHHHHHHHHH
Q psy7366         449 VPSVLLNTIVNESLNKFAL----GHY---SDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTS-GMDPGARRFLWTCI  520 (566)
Q Consensus       449 ~~~~~~~~~~~~~l~~~~l----~~~---~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~-gLD~~~~~~l~~~l  520 (566)
                      ..-          -...|.    ...   .+..+--.+.|...+..  ...+.+-+++++||.-. ++|........+.+
T Consensus       135 ~~~----------~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i  202 (235)
T 3llm_A          135 EEP----------GKSCGYSVRFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDV  202 (235)
T ss_dssp             CCT----------TSSEEEEETTEEECCCSSSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHH
T ss_pred             ccc----------CceEEEeechhhccCCCCCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHH
Confidence            000          000000    000   01112224456655553  33578899999999976 68777664443433


Q ss_pred             HHHHhCCcEEEE-EccCHHHHHhhCC
Q psy7366         521 ERAVSEGRCVIL-TSHNMEECEALCT  545 (566)
Q Consensus       521 ~~~~~~g~tvl~-vsHd~~~~~~~~d  545 (566)
                      ......-.++++ +|.+.+.+.++.+
T Consensus       203 ~~~~~~~~~il~SAT~~~~~~~~~~~  228 (235)
T 3llm_A          203 VQAYPEVRIVLMSATIDTSMFCEYFF  228 (235)
T ss_dssp             HHHCTTSEEEEEECSSCCHHHHHHTT
T ss_pred             HhhCCCCeEEEEecCCCHHHHHHHcC
Confidence            332222233433 4666665555543

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=97.10  E-value=0.0003  Score=70.56  Aligned_cols=32  Identities=31%  Similarity=0.330  Sum_probs=26.9

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHCCCCCCccEE
Q psy7366         372 GECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA  403 (566)
Q Consensus       372 Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i  403 (566)
                      ...+.|.||+|+||||+.++|++...+..|.+
T Consensus        47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~   78 (311)
T 4fcw_A           47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAM   78 (311)
T ss_dssp             SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence            35788999999999999999999887665543

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=97.08  E-value=0.00077  Score=67.91  Aligned_cols=58  Identities=12%  Similarity=0.161  Sum_probs=42.1

Q ss_pred             HHHHHHHcCCCcccccccccCChhHHHHH---HHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHH
Q psy7366          71 VNESLNKFALGHYSDREVRTLSGGNKRKL---STAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERA  136 (566)
Q Consensus        71 ~~~~l~~~gl~~~~~~~~~~LSgG~kqrl---~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l  136 (566)
                      +..+++.+|++.     +..+|+|+.+++   +|++++..+|+++|+|||..   ......+.+.|+.+
T Consensus       151 L~~~~~~~gl~~-----~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL~~l  211 (306)
T 1vma_A          151 LKIWGERVGATV-----ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEELRKV  211 (306)
T ss_dssp             HHHHHHHHTCEE-----ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCcE-----EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHHHHH
Confidence            344555667653     346789999999   99999999999999999974   34455555555554

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=97.07  E-value=0.00033  Score=64.99  Aligned_cols=34  Identities=32%  Similarity=0.467  Sum_probs=20.4

Q ss_pred             ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHC
Q psy7366         360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG  394 (566)
Q Consensus       360 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G  394 (566)
                      .+++++++..++. .++++|++|+|||||++.+.+
T Consensus        12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~   45 (190)
T 1m2o_B           12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN   45 (190)
T ss_dssp             ------------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred             HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence            3778899988877 678999999999999999997

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.06  E-value=3.4e-06  Score=80.17  Aligned_cols=136  Identities=12%  Similarity=0.070  Sum_probs=74.5

Q ss_pred             CCcchHHHHHhccccCCCccCCCCCcccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHHHcC-
Q psy7366           1 MGLTTTPKRVVTLLLTTQKVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFA-   79 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g-   79 (566)
                      .||||++|++.+++-+.    +         ..+|+++++...+.. +..+++.... ..+.+.........+.+..+. 
T Consensus        33 sGKSTl~~~l~~~~~~~----g---------~~~g~v~~d~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~~   97 (208)
T 3c8u_A           33 SGKSTLSNPLAAALSAQ----G---------LPAEVVPMDGFHLDN-RLLEPRGLLP-RKGAPETFDFEGFQRLCHALKH   97 (208)
T ss_dssp             SCTHHHHHHHHHHHHHT----T---------CCEEEEESGGGBCCH-HHHGGGTCGG-GTTSGGGBCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhc----C---------CceEEEecCCCcCCH-HHHHHhcccc-cCCCCchhhHHHHHHHHHHHhc
Confidence            59999999999998532    1         237888888654432 2222221000 112211111122233333332 


Q ss_pred             ---CCcccccccccCChhHHHHHHHH-HHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhH-HH
Q psy7366          80 ---LGHYSDREVRTLSGGNKRKLSTA-IALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEE-CE  154 (566)
Q Consensus        80 ---l~~~~~~~~~~LSgG~kqrl~iA-~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~-~~  154 (566)
                         +..........+|+||+|++++| ++++.++.++++|||.           +..+..   .=-.++++++..+. +.
T Consensus        98 ~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~-----------~~~l~~---~~d~~i~vd~~~~~~~~  163 (208)
T 3c8u_A           98 QERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG-----------WRDLTA---IWDVSIRLEVPMADLEA  163 (208)
T ss_dssp             CSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTT-----------GGGGGG---TCSEEEEECCCHHHHHH
T ss_pred             CCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCch-----------hHHHHH---hcCEEEEEeCCHHHHHH
Confidence               21112223345799999999887 7777777777777773           111122   22368888888877 56


Q ss_pred             hhcCEEEEEeCCE
Q psy7366         155 ALCTKLTIMVNGQ  167 (566)
Q Consensus       155 ~~~d~i~vl~~G~  167 (566)
                      +++.|.  ++.|.
T Consensus       164 R~~~R~--~~~g~  174 (208)
T 3c8u_A          164 RLVQRW--LDHGL  174 (208)
T ss_dssp             HHHHHH--HHTTC
T ss_pred             HHHHHH--HhcCC
Confidence            677772  34454

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.04  E-value=0.00013  Score=67.64  Aligned_cols=41  Identities=24%  Similarity=0.280  Sum_probs=33.4

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEE-EcCc
Q psy7366         368 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY-VMNH  408 (566)
Q Consensus       368 ~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~-~~g~  408 (566)
                      ...+|.+++|+|++||||||+.+.|++.+.+..|.+. +++.
T Consensus         9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d   50 (186)
T 2yvu_A            9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGD   50 (186)
T ss_dssp             CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred             ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHH
Confidence            3457899999999999999999999998877666653 4443

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.02  E-value=6.5e-05  Score=77.73  Aligned_cols=53  Identities=17%  Similarity=0.068  Sum_probs=36.1

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEE
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY  404 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~  404 (566)
                      .+.+.++.+.|+    .+.++++++|+|      +|+|++|+|||||++.|.|...+..|.+.
T Consensus        17 ~v~~~~l~~~~~----~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~   69 (361)
T 2qag_A           17 YVGFANLPNQVH----RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIP   69 (361)
T ss_dssp             ----CCHHHHHH----THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-------
T ss_pred             eEEeccchHHhC----CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCccc
Confidence            367778877775    466788999887      89999999999999999988666555443

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=97.01  E-value=8.2e-05  Score=73.63  Aligned_cols=45  Identities=13%  Similarity=0.021  Sum_probs=35.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEE
Q psy7366         504 PTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLT  548 (566)
Q Consensus       504 Pt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~  548 (566)
                      |+|+.+......+.+.+.+.... ..+..+.+|..+++...++++.
T Consensus       144 ~~Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~e~~~~~l~  189 (271)
T 3k53_A          144 PTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYDEDIEREIKHIS  189 (271)
T ss_dssp             ECBGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCCHHHHHHHHHHH
T ss_pred             EEEeCCCCCHHHHHHHHHHHHhccccCCCCCcCCCHHHHHHHHHHH
Confidence            99999999999999988887654 4555677888888888777653

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=96.98  E-value=0.00033  Score=64.91  Aligned_cols=32  Identities=25%  Similarity=0.314  Sum_probs=26.4

Q ss_pred             eeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCC
Q psy7366         364 QISFGVGRGECFGLLGLNGAGKTTTFKMLTGA  395 (566)
Q Consensus       364 ~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~  395 (566)
                      ++|+...+|.+++|+|++||||||+.+.|+..
T Consensus         2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            56888899999999999999999999999865

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=96.96  E-value=0.00016  Score=67.69  Aligned_cols=48  Identities=29%  Similarity=0.464  Sum_probs=37.1

Q ss_pred             cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCC--------CCCCccEEEEcC
Q psy7366         359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA--------IKPTSGNAYVMN  407 (566)
Q Consensus       359 ~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~--------~~~~~G~i~~~g  407 (566)
                      ..+++++|+..+++. ++|+|++|+|||||++.+.+-        ..++.+.+.++|
T Consensus        13 ~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~   68 (198)
T 1f6b_A           13 SSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAG   68 (198)
T ss_dssp             CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETT
T ss_pred             HHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECC
Confidence            457889999888874 679999999999999999873        223445666665

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=96.95  E-value=6.6e-05  Score=75.67  Aligned_cols=89  Identities=12%  Similarity=0.094  Sum_probs=59.9

Q ss_pred             CCcchHHHHHhccccCCC-ccC-----CCCCccc---ccccceeEEcCCCC----------------CCCCCCHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ-KVP-----GSNPTID---KNLSYIGYCPQFDA----------------LNDRLTPREHLEF   55 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~-~~~-----~~~~~~~---~~~~~ig~v~Q~~~----------------l~~~~tv~e~l~~   55 (566)
                      .||||++|++.++..+.. .+.     +......   .....+|||+|.|.                +++.+|+ +|+.|
T Consensus       180 ~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~~~~l~~~~~~-~n~~~  258 (301)
T 1u0l_A          180 VGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEELKHYFKEFGD-KQCFF  258 (301)
T ss_dssp             SSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHHHGGGSTTSSS-CCCSS
T ss_pred             CcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHHHHHHHHhccc-ccCcC
Confidence            599999999999987654 121     2111111   11236899999986                4678888 88877


Q ss_pred             HHHhcCCChhhHHHHHHHHHHHcCCC-cccccccccCCh
Q psy7366          56 YSRVRNVPSVLLNTIVNESLNKFALG-HYSDREVRTLSG   93 (566)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSg   93 (566)
                      .. .  ....+..+++.++|+.+||. ...++++..||+
T Consensus       259 ~~-~--~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse  294 (301)
T 1u0l_A          259 SD-C--NHVDEPECGVKEAVENGEIAESRYENYVKMFYE  294 (301)
T ss_dssp             TT-C--CSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred             CC-C--cCCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            52 1  12334557889999999996 677888888885

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.94  E-value=7.8e-07  Score=88.66  Aligned_cols=119  Identities=15%  Similarity=0.062  Sum_probs=71.7

Q ss_pred             CCcchHHHHHhccccCCC-ccCCCCCc---ccccccceeEEcCCC-CCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ-KVPGSNPT---IDKNLSYIGYCPQFD-ALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL   75 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~-~~~~~~~~---~~~~~~~ig~v~Q~~-~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l   75 (566)
                      .||||++|++.+.+-++. .+.+....   .....+.|++++|.+ ..++.+++.|++.+....++.      ...    
T Consensus        55 tGKTtLakala~~~~~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~------~~~----  124 (274)
T 2x8a_A           55 CGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSD------RET----  124 (274)
T ss_dssp             SCHHHHHHHHHHHTTCEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC-----------------
T ss_pred             CcHHHHHHHHHHHcCCCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCC------Ccc----
Confidence            599999999998764432 12221111   011123578888875 344555666666432211110      000    


Q ss_pred             HHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCC------------CCCHHHHHHHHHHH
Q psy7366          76 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTS------------GMDPGARRFLWTCI  133 (566)
Q Consensus        76 ~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~------------~LD~~~~~~l~~~l  133 (566)
                      .  .+....++.+.+|||||+|++.|++|+..+|++|  |||+.            -.|..++..+++.+
T Consensus       125 ~--~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~~  190 (274)
T 2x8a_A          125 G--ASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKTI  190 (274)
T ss_dssp             ----CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred             h--HHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHHH
Confidence            0  1233457788899999999999999999999985  99864            34666666666544

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.94  E-value=1.2e-05  Score=82.41  Aligned_cols=42  Identities=21%  Similarity=0.208  Sum_probs=31.7

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHH
Q psy7366         495 NPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME  538 (566)
Q Consensus       495 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~  538 (566)
                      ++.++++|| ...|++..+..+.+.+.+... ...+|+++++..
T Consensus       133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~-~~~~il~~~~~~  174 (353)
T 1sxj_D          133 PYKIIILDE-ADSMTADAQSALRRTMETYSG-VTRFCLICNYVT  174 (353)
T ss_dssp             SCEEEEETT-GGGSCHHHHHHHHHHHHHTTT-TEEEEEEESCGG
T ss_pred             CceEEEEEC-CCccCHHHHHHHHHHHHhcCC-CceEEEEeCchh
Confidence            567999999 788999988888888876533 345666776654

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=96.94  E-value=0.00039  Score=72.40  Aligned_cols=41  Identities=32%  Similarity=0.536  Sum_probs=33.5

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHHCC-----------CCCCccEEEEcCc
Q psy7366         368 GVGRGECFGLLGLNGAGKTTTFKMLTGA-----------IKPTSGNAYVMNH  408 (566)
Q Consensus       368 ~i~~Ge~~~l~G~NGsGKSTLl~~i~G~-----------~~~~~G~i~~~g~  408 (566)
                      .+..|..++|+|+||+|||||++.|+|.           ..|..|.+.+.+.
T Consensus        18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~   69 (396)
T 2ohf_A           18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE   69 (396)
T ss_dssp             CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred             hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence            3467788999999999999999999998           6678888887653

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.94  E-value=0.00032  Score=65.82  Aligned_cols=21  Identities=38%  Similarity=0.545  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTG  394 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G  394 (566)
                      +++|+|+|||||||+.++|++
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH
Confidence            689999999999999999999

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=96.90  E-value=0.00012  Score=68.73  Aligned_cols=35  Identities=17%  Similarity=0.433  Sum_probs=28.0

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccC
Q psy7366         372 GECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI  410 (566)
Q Consensus       372 Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~  410 (566)
                      ..+++|+|++||||||+.+.|++.+    |.+.+++..+
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~~   52 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDAL   52 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGGG
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCcC
Confidence            4589999999999999999998765    4556665544

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=96.87  E-value=0.00084  Score=60.56  Aligned_cols=24  Identities=38%  Similarity=0.520  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAIK  397 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~~  397 (566)
                      .++|+|++|+|||||++.++|...
T Consensus         5 ~v~lvG~~gvGKStL~~~l~~~~~   28 (165)
T 2wji_A            5 EIALIGNPNVGKSTIFNALTGENV   28 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCe
Confidence            589999999999999999999654

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.86  E-value=0.0021  Score=61.70  Aligned_cols=59  Identities=15%  Similarity=0.057  Sum_probs=44.3

Q ss_pred             CCCCEEEeeCCCCCC--CHHHHHHH-HHHHHHHHhCCCEEEEecCChhH--------HHhhcCEEEEEeC
Q psy7366         107 GNPPLIFLDEPTSGM--DPGARRFL-WTCIERAVSEGRCVILTSHNMEE--------CEALCTKLTIMVN  165 (566)
Q Consensus       107 ~~p~vLlLDEPt~~L--D~~~~~~l-~~~l~~l~~~g~tviiisH~~~~--------~~~~~d~i~vl~~  165 (566)
                      .+|+++++|+|++.+  |+.....+ ..+.+.+++.|.|||+++|...+        +...||.|+.|+.
T Consensus       127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~  196 (247)
T 2dr3_A          127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL  196 (247)
T ss_dssp             HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred             hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence            589999999999988  65444444 44444445679999999999876        5678999999975

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=96.84  E-value=0.013  Score=63.12  Aligned_cols=33  Identities=18%  Similarity=0.188  Sum_probs=26.1

Q ss_pred             eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHC
Q psy7366         362 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG  394 (566)
Q Consensus       362 l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G  394 (566)
                      |+.+.--+.+|+++.|.|++|+|||||.--++-
T Consensus       232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~  264 (503)
T 1q57_A          232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL  264 (503)
T ss_dssp             HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred             hhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence            444433589999999999999999999766653

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=96.82  E-value=0.012  Score=60.78  Aligned_cols=140  Identities=16%  Similarity=0.210  Sum_probs=76.7

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhc
Q psy7366         368 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVR  447 (566)
Q Consensus       368 ~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~  447 (566)
                      -+++|+++.|.||.|+|||||...++-..... |                 ..+.|+.-+..+.+       + +     
T Consensus        70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~-g-----------------~~vlyi~~E~s~~~-------~-~-----  118 (366)
T 1xp8_A           70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKA-G-----------------GTCAFIDAEHALDP-------V-Y-----  118 (366)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHHHT-T-----------------CCEEEEESSCCCCH-------H-H-----
T ss_pred             CccCCcEEEEEcCCCCChHHHHHHHHHHHHHC-C-----------------CeEEEEECCCChhH-------H-H-----
Confidence            37899999999999999999987665322111 1                 13556654432110       0 0     


Q ss_pred             CCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHc--CCCCEEEEeCCCCCCC---H----------HH
Q psy7366         448 NVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALL--GNPPLIFLDEPTSGMD---P----------GA  512 (566)
Q Consensus       448 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~--~~p~lllLDEPt~gLD---~----------~~  512 (566)
                                    ...+++... +-.+..-..++ +-+.+++.++  .+++++++|..++=.-   .          ..
T Consensus       119 --------------a~~~g~d~~-~l~i~~~~~~e-~~l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~  182 (366)
T 1xp8_A          119 --------------ARALGVNTD-ELLVSQPDNGE-QALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQ  182 (366)
T ss_dssp             --------------HHHTTCCGG-GCEEECCSSHH-HHHHHHHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHH
T ss_pred             --------------HHHcCCCHH-HceeecCCcHH-HHHHHHHHHHhcCCCCEEEEeChHHhccccccccccccchhhHH
Confidence                          111122100 00000101122 3345556555  5689999999886441   0          11


Q ss_pred             HHHHHHHHHHH---HhC-CcEEEEEccCHHH----------------HHhhCCEEEEEECCE
Q psy7366         513 RRFLWTCIERA---VSE-GRCVILTSHNMEE----------------CEALCTKLTIMVNGQ  554 (566)
Q Consensus       513 ~~~l~~~l~~~---~~~-g~tvl~vsHd~~~----------------~~~~~drv~~l~~G~  554 (566)
                      .+.+.+.++++   +++ +.+||+++|-...                +..+||.++.|+.+.
T Consensus       183 ~r~~~~~lr~L~~~a~~~~~~VI~~nq~~~~~~~~fg~p~~~~gg~al~~~a~~rl~L~r~~  244 (366)
T 1xp8_A          183 ARLMSQALRKLTAILSKTGTAAIFINQVREKIGVMYGNPETTTGGRALKFYASVRLDVRKIG  244 (366)
T ss_dssp             HHHHHHHHHHHHHHHTTTCCEEEEEEEC---------------CHHHHHHHCSEEEEEEEES
T ss_pred             HHHHHHHHHHHHHHHHHcCCEEEEEEecccccCcccCCccccCCcchhhheeeEEEEEEecc
Confidence            13345555555   344 8999999886432                356688888887544

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=96.81  E-value=0.0071  Score=60.46  Aligned_cols=45  Identities=22%  Similarity=0.075  Sum_probs=38.4

Q ss_pred             ChhHHHHHHHHHHHhCCCCEEEeeCC-CCCCCHHHHHHHHHHHHHH
Q psy7366          92 SGGNKRKLSTAIALLGNPPLIFLDEP-TSGMDPGARRFLWTCIERA  136 (566)
Q Consensus        92 SgG~kqrl~iA~al~~~p~vLlLDEP-t~~LD~~~~~~l~~~l~~l  136 (566)
                      +..+.+|.+|+.+...+++++|+||| +.++|......+..+.+.+
T Consensus       164 ~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~  209 (295)
T 1ls1_A          164 SPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL  209 (295)
T ss_dssp             CHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhc
Confidence            34455788999998899999999999 9999999999988887654

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=96.79  E-value=0.00061  Score=62.52  Aligned_cols=22  Identities=41%  Similarity=0.635  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGA  395 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~  395 (566)
                      .++|+|++|+|||||++.++|.
T Consensus         9 ~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            9 EIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5889999999999999999985

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=96.79  E-value=0.00055  Score=64.46  Aligned_cols=29  Identities=24%  Similarity=0.273  Sum_probs=26.0

Q ss_pred             EeCCcEEEEEcCCCCcHHHHHHHHHCCCC
Q psy7366         369 VGRGECFGLLGLNGAGKTTTFKMLTGAIK  397 (566)
Q Consensus       369 i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~  397 (566)
                      ..+|.+++|+||+|||||||.+.|+..++
T Consensus         9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~   37 (204)
T 2qor_A            9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP   37 (204)
T ss_dssp             CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence            46889999999999999999999987664

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.76  E-value=0.0025  Score=62.90  Aligned_cols=51  Identities=20%  Similarity=0.188  Sum_probs=34.1

Q ss_pred             HHHcCCCCEEEEeCCCCC----------CCHHHHHHHHHHHHHHH---h-CCcEEEEEccCHHHH
Q psy7366         490 IALLGNPPLIFLDEPTSG----------MDPGARRFLWTCIERAV---S-EGRCVILTSHNMEEC  540 (566)
Q Consensus       490 ~al~~~p~lllLDEPt~g----------LD~~~~~~l~~~l~~~~---~-~g~tvl~vsHd~~~~  540 (566)
                      .+....|.+|++||--.-          -+...+..+..++..+.   . .+..||.+|+..+.+
T Consensus       105 ~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l  169 (285)
T 3h4m_A          105 LAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDIL  169 (285)
T ss_dssp             HHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGB
T ss_pred             HHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhc
Confidence            344457889999997432          36667777888887763   1 256788888866443

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=96.71  E-value=0.0014  Score=67.31  Aligned_cols=28  Identities=25%  Similarity=0.398  Sum_probs=23.3

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHHCCCC
Q psy7366         370 GRGECFGLLGLNGAGKTTTFKMLTGAIK  397 (566)
Q Consensus       370 ~~Ge~~~l~G~NGsGKSTLl~~i~G~~~  397 (566)
                      ..+..+.|.||.|+|||||++.++....
T Consensus        42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~   69 (387)
T 2v1u_A           42 EKPSNALLYGLTGTGKTAVARLVLRRLE   69 (387)
T ss_dssp             CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence            3455788999999999999999987653

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=96.66  E-value=7.1e-07  Score=84.43  Aligned_cols=57  Identities=18%  Similarity=0.173  Sum_probs=43.8

Q ss_pred             HHH-HHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHHhhcCEEEEEeC
Q psy7366         101 TAI-ALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVN  165 (566)
Q Consensus       101 iA~-al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~~~d~i~vl~~  165 (566)
                      .|+ +++.+|.+++|||||+++|..+.+.+.+.|.++.+.    +.++|  +.  ..+|+|+++++
T Consensus       116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~--~~--~~~D~iivnd~  173 (198)
T 1lvg_A          116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSK--EP--GLFDLVIINDD  173 (198)
T ss_dssp             CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGG--ST--TTCSEEEECSS
T ss_pred             CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhh--cc--CCceEEEECCC
Confidence            455 678889999999999999999999999988876442    34556  22  56999988763

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=96.63  E-value=0.0093  Score=59.94  Aligned_cols=124  Identities=10%  Similarity=0.079  Sum_probs=66.4

Q ss_pred             EeCCcEEEEEcCCCCcHHHHH-HHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhc
Q psy7366         369 VGRGECFGLLGLNGAGKTTTF-KMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVR  447 (566)
Q Consensus       369 i~~Ge~~~l~G~NGsGKSTLl-~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~  447 (566)
                      +++| ++-|.||.|+|||||. .+++...+...|                 ..+.|+.-+..+.+     +         
T Consensus        26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g-----------------~~vlyId~E~s~~~-----~---------   73 (333)
T 3io5_A           26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPD-----------------AVCLFYDSEFGITP-----A---------   73 (333)
T ss_dssp             BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTT-----------------CEEEEEESSCCCCH-----H---------
T ss_pred             CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCC-----------------ceEEEEeccchhhH-----H---------
Confidence            6788 8999999999999994 554443321001                 12455544332211     0         


Q ss_pred             CCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHH--c--CCCCEEEEeCCCCCCC-------H------
Q psy7366         448 NVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIAL--L--GNPPLIFLDEPTSGMD-------P------  510 (566)
Q Consensus       448 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al--~--~~p~lllLDEPt~gLD-------~------  510 (566)
                                   .++++|++.. +-.+..=.-++++.+.++.++  +  .+|+++++|--++-.-       +      
T Consensus        74 -------------ra~~lGvd~d-~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~g  139 (333)
T 3io5_A           74 -------------YLRSMGVDPE-RVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVS  139 (333)
T ss_dssp             -------------HHHHTTCCGG-GEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC-------------
T ss_pred             -------------HHHHhCCCHH-HeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCcccccccc
Confidence                         0223333210 011112224566656666666  3  4699999997766531       1      


Q ss_pred             --HHHHHHHHHHHH---H-HhCCcEEEEEccCHH
Q psy7366         511 --GARRFLWTCIER---A-VSEGRCVILTSHNME  538 (566)
Q Consensus       511 --~~~~~l~~~l~~---~-~~~g~tvl~vsHd~~  538 (566)
                        ...+.+-+.|++   + .+.+.++|++-|-..
T Consensus       140 sv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV~k  173 (333)
T 3io5_A          140 DMTRAKTMKSLFRIVTPYFSTKNIPCIAINHTYE  173 (333)
T ss_dssp             -CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCEEEEECCeee
Confidence              122233344433   3 356999999999865

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=96.59  E-value=0.0011  Score=61.07  Aligned_cols=25  Identities=32%  Similarity=0.434  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCCCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAIKP  398 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~~~  398 (566)
                      .++|+|++|+|||||++.++|...+
T Consensus         4 kv~ivG~~gvGKStLl~~l~~~~~~   28 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMKTKKS   28 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTCC---
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCc
Confidence            4789999999999999999997544

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.58  E-value=0.00069  Score=62.43  Aligned_cols=36  Identities=28%  Similarity=0.339  Sum_probs=28.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHCCCCCC---ccEEEEcCc
Q psy7366         373 ECFGLLGLNGAGKTTTFKMLTGAIKPT---SGNAYVMNH  408 (566)
Q Consensus       373 e~~~l~G~NGsGKSTLl~~i~G~~~~~---~G~i~~~g~  408 (566)
                      .+++|+|++|||||||++.|.+.+++.   -|.|..++.
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~   45 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH   45 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence            588999999999999999999876543   366666554

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=96.58  E-value=0.0041  Score=75.50  Aligned_cols=75  Identities=13%  Similarity=0.059  Sum_probs=49.2

Q ss_pred             HHHHHHHHh--CCCCEEEeeCCCCCCCHH-------------HHHHHHHHHHHH----HhCCCEEEEecCChh-------
Q psy7366          98 KLSTAIALL--GNPPLIFLDEPTSGMDPG-------------ARRFLWTCIERA----VSEGRCVILTSHNME-------  151 (566)
Q Consensus        98 rl~iA~al~--~~p~vLlLDEPt~~LD~~-------------~~~~l~~~l~~l----~~~g~tviiisH~~~-------  151 (566)
                      -+.+++.++  .+|+++++|..++-....             ..+.+.+.+++|    ++.|.+||+++|-..       
T Consensus       449 ~l~~l~~lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~~fg  528 (1706)
T 3cmw_A          449 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG  528 (1706)
T ss_dssp             HHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSS
T ss_pred             HHHHHHHHHHhcCCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecccccccccC
Confidence            344555554  689999999988876421             223444555554    456999999988532       


Q ss_pred             ---------HHHhhcCEEEEEeCCEEEEec
Q psy7366         152 ---------ECEALCTKLTIMVNGQFTCLG  172 (566)
Q Consensus       152 ---------~~~~~~d~i~vl~~G~i~~~g  172 (566)
                               .+...||-++.++....+..|
T Consensus       529 ~~~~p~gg~ale~~ADv~L~L~R~~~~~~g  558 (1706)
T 3cmw_A          529 NPETTTGGNALKFYASVRLDIRRIGAVKEG  558 (1706)
T ss_dssp             CCEEESSCSHHHHHEEEEEEEEEEEEEEET
T ss_pred             CCccCCCCcceeeeCCEEEEEEeccccccC
Confidence                     356678988888876654433

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=96.57  E-value=0.00026  Score=72.45  Aligned_cols=36  Identities=22%  Similarity=0.244  Sum_probs=32.3

Q ss_pred             eeeeeeEEEeCCcE--EEEEcCCCCcHHHHHHHHHCCC
Q psy7366         361 AVNQISFGVGRGEC--FGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       361 ~l~~isl~i~~Ge~--~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      +++.+++.+.+|++  ++|+|++||||||+.++|++.+
T Consensus        11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l   48 (359)
T 2ga8_A           11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII   48 (359)
T ss_dssp             HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence            67778888889988  9999999999999999999864

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=96.53  E-value=0.003  Score=60.47  Aligned_cols=52  Identities=17%  Similarity=0.232  Sum_probs=38.8

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccC----------HHHHHhhCCEEEEEE
Q psy7366         495 NPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN----------MEECEALCTKLTIMV  551 (566)
Q Consensus       495 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd----------~~~~~~~~drv~~l~  551 (566)
                      +++++++||--. |+..    +.+.+..+++.|..||++-|+          ...+..+||+|.-|+
T Consensus        89 ~~dvViIDEaQ~-l~~~----~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~  150 (223)
T 2b8t_A           89 ETKVIGIDEVQF-FDDR----ICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT  150 (223)
T ss_dssp             TCCEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred             CCCEEEEecCcc-CcHH----HHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence            589999999954 6654    334556666669999999993          456667999998864

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=96.50  E-value=0.0012  Score=60.82  Aligned_cols=25  Identities=36%  Similarity=0.425  Sum_probs=22.2

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHHC
Q psy7366         370 GRGECFGLLGLNGAGKTTTFKMLTG  394 (566)
Q Consensus       370 ~~Ge~~~l~G~NGsGKSTLl~~i~G  394 (566)
                      .+|.+++|+|++||||||+.+.|+.
T Consensus         2 ~~g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            2 DVGQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3678999999999999999999984

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=96.49  E-value=0.00023  Score=71.68  Aligned_cols=96  Identities=13%  Similarity=0.134  Sum_probs=56.2

Q ss_pred             CCcchHHHHHhccccCCC-ccC-----CCCCccc-c-cccceeEEcCCCCCCC----CCCHHHHHH-HHHHh--------
Q psy7366           1 MGLTTTPKRVVTLLLTTQ-KVP-----GSNPTID-K-NLSYIGYCPQFDALND----RLTPREHLE-FYSRV--------   59 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~-~~~-----~~~~~~~-~-~~~~ig~v~Q~~~l~~----~~tv~e~l~-~~~~~--------   59 (566)
                      +||||++|++++...+.. .+.     |...... . ....+||++|.|.+..    .+|+ |++. ++.+.        
T Consensus       184 ~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~l~~~f~~~~~~~~~C~  262 (307)
T 1t9h_A          184 VGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EELGYTFPDIREKSSSCK  262 (307)
T ss_dssp             HHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HHHGGGSHHHHHHGGGCS
T ss_pred             CCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HHHHHHHHHHHHHhhhcc
Confidence            489999999999875433 121     1111111 1 1112799999998765    6789 8883 12211        


Q ss_pred             -cC-CChhhHHHHHHHHHHHcCCCcccccccccCChhHHH
Q psy7366          60 -RN-VPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKR   97 (566)
Q Consensus        60 -~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~kq   97 (566)
                       .+ ....+...++.++++.++|.....+.+..|+.|++|
T Consensus       263 f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~~lls~~~~  302 (307)
T 1t9h_A          263 FRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEFMTEIKD  302 (307)
T ss_dssp             STTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHHHHT
T ss_pred             ccCCCCccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHhh
Confidence             11 223344567899999999987666667777778876

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.49  E-value=0.0019  Score=61.14  Aligned_cols=44  Identities=16%  Similarity=0.224  Sum_probs=31.4

Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHH
Q psy7366         494 GNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEE  539 (566)
Q Consensus       494 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~  539 (566)
                      .+|.+|++||.-. +|+.....+.+.+.+. ..+..+|++|++...
T Consensus       125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~-~~~~~~i~~t~~~~~  168 (250)
T 1njg_A          125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDPQK  168 (250)
T ss_dssp             SSSEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCGGG
T ss_pred             CCceEEEEECccc-ccHHHHHHHHHHHhcC-CCceEEEEEeCChHh
Confidence            4678999999765 7888777776666432 235678888887653

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.45  E-value=0.0013  Score=63.48  Aligned_cols=35  Identities=17%  Similarity=0.158  Sum_probs=27.4

Q ss_pred             EeCCcEEEEEcCCCCcHHHHHHHHHC---CCCCCccEE
Q psy7366         369 VGRGECFGLLGLNGAGKTTTFKMLTG---AIKPTSGNA  403 (566)
Q Consensus       369 i~~Ge~~~l~G~NGsGKSTLl~~i~G---~~~~~~G~i  403 (566)
                      -.+|.+++|+|++||||||+.++|++   ...++.|.+
T Consensus        13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~   50 (236)
T 1q3t_A           13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAM   50 (236)
T ss_dssp             -CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCe
Confidence            46788999999999999999999986   333445544

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.42  E-value=0.0011  Score=64.73  Aligned_cols=45  Identities=20%  Similarity=0.280  Sum_probs=29.6

Q ss_pred             eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccC
Q psy7366         362 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI  410 (566)
Q Consensus       362 l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~  410 (566)
                      ++++++.+++|  +.|.||+|+|||||.++|++.....  -+.+++.++
T Consensus        37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~~   81 (257)
T 1lv7_A           37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSDF   81 (257)
T ss_dssp             C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCSS
T ss_pred             HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHHH
Confidence            34444445555  7899999999999999999876432  356665544

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.38  E-value=0.001  Score=64.96  Aligned_cols=41  Identities=22%  Similarity=0.223  Sum_probs=33.1

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccC
Q psy7366         368 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI  410 (566)
Q Consensus       368 ~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~  410 (566)
                      ...++.++.|+|++||||||+.+.|+..+.  .+.+.+++..+
T Consensus        28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~   68 (253)
T 2p5t_B           28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSF   68 (253)
T ss_dssp             CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGG
T ss_pred             cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHH
Confidence            346778999999999999999999998764  35677777654

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=96.27  E-value=0.017  Score=55.37  Aligned_cols=60  Identities=17%  Similarity=0.114  Sum_probs=39.1

Q ss_pred             HcCCCCEEEEeCCCC----CCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHH----------HHhhCCEEEEEE
Q psy7366         492 LLGNPPLIFLDEPTS----GMDPGARRFLWTCIERAVSE-GRCVILTSHNMEE----------CEALCTKLTIMV  551 (566)
Q Consensus       492 l~~~p~lllLDEPt~----gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~----------~~~~~drv~~l~  551 (566)
                      -..+|+++++|--+.    .-|......+...|..++++ +.++++++|-...          ...+||-|+.|+
T Consensus       132 ~~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~  206 (251)
T 2zts_A          132 KAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD  206 (251)
T ss_dssp             HHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred             HhcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence            456889999995432    11344455566666666655 9999999985322          345789988875

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=96.26  E-value=0.0028  Score=65.16  Aligned_cols=67  Identities=15%  Similarity=0.221  Sum_probs=51.5

Q ss_pred             ccccccCChhHHHHHHHHHHHhCCCCEEEee-CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEec--CChhHH
Q psy7366          85 DREVRTLSGGNKRKLSTAIALLGNPPLIFLD-EPTSGMDPGARRFLWTCIERAVSEGRCVILTS--HNMEEC  153 (566)
Q Consensus        85 ~~~~~~LSgG~kqrl~iA~al~~~p~vLlLD-EPt~~LD~~~~~~l~~~l~~l~~~g~tviiis--H~~~~~  153 (566)
                      +.+..++|++++|.+. +.+...++-++++| +|++++|......+.+.+..+.. +..+|++.  ||+...
T Consensus       226 ~~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~  295 (357)
T 2e87_A          226 DRPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADE  295 (357)
T ss_dssp             SSCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCH
T ss_pred             ccchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCCh
Confidence            3466789999998776 55556788889999 99999999988877777766533 77788877  887543

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=96.21  E-value=0.0062  Score=62.05  Aligned_cols=56  Identities=13%  Similarity=0.105  Sum_probs=45.1

Q ss_pred             ccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHh-C-CCEEEEecCC
Q psy7366          89 RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS-E-GRCVILTSHN  149 (566)
Q Consensus        89 ~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~-~-g~tviiisH~  149 (566)
                      +.||.++.+|+..|...+.+++++|.|+|...     ..+|...++++++ . |..+|||.|-
T Consensus       108 g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----i~~i~~~ir~l~~~~gg~~lIVIDyL  165 (338)
T 4a1f_A          108 GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----IEQIRLQLRKLKSQHKELGIAFIDYL  165 (338)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----HHHHHHHHHHHHHHCTTEEEEEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----HHHHHHHHHHHHHhcCCCCEEEEech
Confidence            47999999999999999999999999998654     4466777777754 4 6788888753

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=96.19  E-value=0.0015  Score=68.02  Aligned_cols=60  Identities=22%  Similarity=0.225  Sum_probs=47.5

Q ss_pred             CCCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHhCCcEEEEEccCHHHHH------------hhCCEEEEEECC
Q psy7366         494 GNPPLIFLDEPTSGMD---PGARRFLWTCIERAVSEGRCVILTSHNMEECE------------ALCTKLTIMVNG  553 (566)
Q Consensus       494 ~~p~lllLDEPt~gLD---~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~------------~~~drv~~l~~G  553 (566)
                      ..|.++++||--.-++   +.....+.+.+++.++.|..++++||++..+.            .-|+..+++...
T Consensus       261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~~~~~~~~~~~~il~n~~~~i~l~~~  335 (392)
T 4ag6_A          261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDFLAPEVQRYGQALLDNPTYKLLLAQG  335 (392)
T ss_dssp             CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGGGGSTTTHHHHHHHHHSCSEEEECSCC
T ss_pred             CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHHhhChhhHHHHHHHHHhhhhhheeCCC
Confidence            3578999999988884   77788888888888888999999999997653            336666666543

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.17  E-value=0.0016  Score=62.94  Aligned_cols=32  Identities=25%  Similarity=0.317  Sum_probs=25.5

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHH---CCCCCCccEE
Q psy7366         372 GECFGLLGLNGAGKTTTFKMLT---GAIKPTSGNA  403 (566)
Q Consensus       372 Ge~~~l~G~NGsGKSTLl~~i~---G~~~~~~G~i  403 (566)
                      .-+++|.||+||||||+.+.|+   |+...+.|.+
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~   43 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAM   43 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcH
Confidence            4589999999999999999998   5544455544

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.17  E-value=0.02  Score=50.47  Aligned_cols=43  Identities=12%  Similarity=0.086  Sum_probs=28.1

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcc-CHHH
Q psy7366         495 NPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH-NMEE  539 (566)
Q Consensus       495 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsH-d~~~  539 (566)
                      +..+|++||. ..|++..+..+.+.|... .....+|++|. +++.
T Consensus        76 ~~g~l~ldei-~~l~~~~q~~Ll~~l~~~-~~~~~~I~~t~~~~~~  119 (145)
T 3n70_A           76 QGGTLVLSHP-EHLTREQQYHLVQLQSQE-HRPFRLIGIGDTSLVE  119 (145)
T ss_dssp             TTSCEEEECG-GGSCHHHHHHHHHHHHSS-SCSSCEEEEESSCHHH
T ss_pred             CCcEEEEcCh-HHCCHHHHHHHHHHHhhc-CCCEEEEEECCcCHHH
Confidence            4468999998 468888888888887332 22445555554 4443

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=96.13  E-value=0.0027  Score=57.36  Aligned_cols=23  Identities=22%  Similarity=0.093  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      +++|+|++||||||+.+.|+..+
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l   25 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKEL   25 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999998654

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=96.03  E-value=0.0036  Score=56.98  Aligned_cols=26  Identities=23%  Similarity=0.258  Sum_probs=23.2

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHCCCC
Q psy7366         372 GECFGLLGLNGAGKTTTFKMLTGAIK  397 (566)
Q Consensus       372 Ge~~~l~G~NGsGKSTLl~~i~G~~~  397 (566)
                      |.++.|+|++||||||+.+.|+..+.
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l~   28 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            56899999999999999999997654

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=96.02  E-value=0.013  Score=59.02  Aligned_cols=28  Identities=18%  Similarity=0.017  Sum_probs=25.0

Q ss_pred             EEEeCCcEEEEEcCCCCcHHHHHHHHHC
Q psy7366         367 FGVGRGECFGLLGLNGAGKTTTFKMLTG  394 (566)
Q Consensus       367 l~i~~Ge~~~l~G~NGsGKSTLl~~i~G  394 (566)
                      --+.+|.++.|.||.|+|||||...++.
T Consensus       118 GGi~~gsviLI~GpPGsGKTtLAlqlA~  145 (331)
T 2vhj_A          118 GHRYASGMVIVTGKGNSGKTPLVHALGE  145 (331)
T ss_dssp             TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred             CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            3578899999999999999999998874

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=95.99  E-value=0.013  Score=62.02  Aligned_cols=34  Identities=15%  Similarity=0.198  Sum_probs=27.3

Q ss_pred             eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHC
Q psy7366         361 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG  394 (566)
Q Consensus       361 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G  394 (566)
                      -|+.+.--+.+|+++.|.|+.|+|||||.--++.
T Consensus       186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~  219 (444)
T 3bgw_A          186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK  219 (444)
T ss_dssp             HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred             HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence            3554443589999999999999999999876654

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=95.97  E-value=0.0046  Score=63.62  Aligned_cols=36  Identities=36%  Similarity=0.590  Sum_probs=29.8

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHC-----------CCCCCccEEEEcC
Q psy7366         372 GECFGLLGLNGAGKTTTFKMLTG-----------AIKPTSGNAYVMN  407 (566)
Q Consensus       372 Ge~~~l~G~NGsGKSTLl~~i~G-----------~~~~~~G~i~~~g  407 (566)
                      |-.++|+|.+|+|||||++.|+|           ...|..|.+.+.+
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~   48 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD   48 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence            34689999999999999999998           3457778877765

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=95.93  E-value=0.0041  Score=57.16  Aligned_cols=25  Identities=20%  Similarity=0.383  Sum_probs=22.2

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         372 GECFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       372 Ge~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      |.++.|.|+.||||||+.+.|+-.+
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~l   27 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDNL   27 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            6689999999999999999998643

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=95.92  E-value=0.0067  Score=62.36  Aligned_cols=51  Identities=14%  Similarity=0.044  Sum_probs=40.6

Q ss_pred             CCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEecCChhHHHhhcC
Q psy7366         107 GNPPLIFLDEPTSGMDPGARRFLWTCIERAVS---EGRCVILTSHNMEECEALCT  158 (566)
Q Consensus       107 ~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~---~g~tviiisH~~~~~~~~~d  158 (566)
                      .+|.||+|||+... |+.....|..++.++..   .+.++|+++|+.+....+.+
T Consensus       124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~  177 (389)
T 1fnn_A          124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDP  177 (389)
T ss_dssp             TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCH
T ss_pred             CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCH
Confidence            56889999999876 99999898888877655   57899999999875555433

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=95.91  E-value=0.021  Score=58.51  Aligned_cols=26  Identities=27%  Similarity=0.248  Sum_probs=22.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         371 RGECFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       371 ~Ge~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      +..-+.|.||.|+|||||.++|+...
T Consensus       116 ~~~~vLl~GppGtGKT~la~aia~~~  141 (357)
T 3d8b_A          116 PPKGILLFGPPGTGKTLIGKCIASQS  141 (357)
T ss_dssp             CCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHc
Confidence            34567899999999999999998754

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=95.89  E-value=0.026  Score=54.55  Aligned_cols=26  Identities=31%  Similarity=0.230  Sum_probs=21.6

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         371 RGECFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       371 ~Ge~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      ...-+.|.||.|+|||||.+.++...
T Consensus        38 ~~~~vll~G~~GtGKT~la~~la~~~   63 (262)
T 2qz4_A           38 VPKGALLLGPPGCGKTLLAKAVATEA   63 (262)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHh
Confidence            34457799999999999999998743

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=95.88  E-value=0.043  Score=66.74  Aligned_cols=67  Identities=10%  Similarity=0.017  Sum_probs=44.2

Q ss_pred             HHHHHHHh--CCCCEEEeeCCCCCCCHH-----------------HHHHHHHHHHHHHhCCCEEEEecCChh--------
Q psy7366          99 LSTAIALL--GNPPLIFLDEPTSGMDPG-----------------ARRFLWTCIERAVSEGRCVILTSHNME--------  151 (566)
Q Consensus        99 l~iA~al~--~~p~vLlLDEPt~~LD~~-----------------~~~~l~~~l~~l~~~g~tviiisH~~~--------  151 (566)
                      ..+...+.  .+|+++|+|+-+.-.-..                 .++.+..+...+++.+.+||++.|..+        
T Consensus       101 ~~ll~~L~~~~~~~LVVIDSLt~L~~~~e~e~~~~~~~~~~~~r~~~~ll~~L~~~ake~~~tVIvTNqv~s~~g~~fgd  180 (1706)
T 3cmw_A          101 LEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGN  180 (1706)
T ss_dssp             HHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSC
T ss_pred             HHHHHHHHhccCCCEEEEcchhhhccccccccccccchhHHHHHHHHHHHHHHHHHHHHcCCEEEEEeecccccccccCc
Confidence            34444553  579999999988766543                 123444444445566889888877532        


Q ss_pred             --------HHHhhcCEEEEEeC
Q psy7366         152 --------ECEALCTKLTIMVN  165 (566)
Q Consensus       152 --------~~~~~~d~i~vl~~  165 (566)
                              .+..+||-++.|+.
T Consensus       181 ~~~a~~g~~l~h~ad~~I~L~r  202 (1706)
T 3cmw_A          181 PETTTGGNALKFYASVRLDIRR  202 (1706)
T ss_dssp             CEEESSCSHHHHHEEEEEEEEE
T ss_pred             cccccCcchhhhhCCEEEEEEe
Confidence                    45567888999875

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=95.84  E-value=0.0046  Score=58.48  Aligned_cols=24  Identities=25%  Similarity=0.248  Sum_probs=21.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHC
Q psy7366         371 RGECFGLLGLNGAGKTTTFKMLTG  394 (566)
Q Consensus       371 ~Ge~~~l~G~NGsGKSTLl~~i~G  394 (566)
                      ++-+++|+|++||||||+.+.|+.
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999999997

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=95.82  E-value=0.0042  Score=57.24  Aligned_cols=27  Identities=22%  Similarity=0.198  Sum_probs=23.2

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         370 GRGECFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       370 ~~Ge~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      .++.++.|+|++||||||+.+.|+..+
T Consensus         3 ~~~~~I~l~G~~GsGKST~~~~L~~~l   29 (193)
T 2rhm_A            3 QTPALIIVTGHPATGKTTLSQALATGL   29 (193)
T ss_dssp             SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence            457789999999999999999997543

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=95.82  E-value=0.0012  Score=62.15  Aligned_cols=30  Identities=30%  Similarity=0.554  Sum_probs=24.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCCCCCccEE
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAIKPTSGNA  403 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i  403 (566)
                      +++|.|++||||||+++.|+..+.+....+
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v   31 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSV   31 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHHEEEEEE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence            689999999999999999998776433344

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=95.80  E-value=0.0045  Score=55.68  Aligned_cols=19  Identities=32%  Similarity=0.544  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHH
Q psy7366         374 CFGLLGLNGAGKTTTFKML  392 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i  392 (566)
                      +++|.||.||||||+.+.|
T Consensus         3 ~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            6899999999999999999

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=95.79  E-value=0.056  Score=56.92  Aligned_cols=28  Identities=29%  Similarity=0.463  Sum_probs=24.5

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHCCCCC
Q psy7366         371 RGECFGLLGLNGAGKTTTFKMLTGAIKP  398 (566)
Q Consensus       371 ~Ge~~~l~G~NGsGKSTLl~~i~G~~~~  398 (566)
                      ++.+++++|++|+||||++..|+..+..
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~  126 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQK  126 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence            5679999999999999999999876654

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=95.79  E-value=0.0032  Score=71.53  Aligned_cols=76  Identities=12%  Similarity=0.110  Sum_probs=60.7

Q ss_pred             ccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEE-ecCChhHHHhhcCEE
Q psy7366          85 DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTS-GMDPGARRFLWTCIERAVSEGRCVIL-TSHNMEECEALCTKL  160 (566)
Q Consensus        85 ~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~-~LD~~~~~~l~~~l~~l~~~g~tvii-isH~~~~~~~~~d~i  160 (566)
                      +..+.-+|+|+.+|..++.+++.+++++|+|||.. +||......+...+........+|++ +||+.+.+.++++..
T Consensus       185 ~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~~  262 (773)
T 2xau_A          185 KTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDA  262 (773)
T ss_dssp             TCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTTSC
T ss_pred             CCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhcCC
Confidence            44577789999999999999999999999999997 99987766666655554444567777 599998888877643

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=95.76  E-value=0.0046  Score=57.50  Aligned_cols=33  Identities=24%  Similarity=0.288  Sum_probs=26.7

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCcc
Q psy7366         372 GECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS  409 (566)
Q Consensus       372 Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~  409 (566)
                      ..+++|+|++||||||+.+.|+..     |-..++...
T Consensus         8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~d~   40 (203)
T 1uf9_A            8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDLDA   40 (203)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEcccH
Confidence            357999999999999999999975     656665543

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=95.75  E-value=0.013  Score=62.56  Aligned_cols=76  Identities=20%  Similarity=0.241  Sum_probs=61.4

Q ss_pred             ccccCcCcCChhHHHHHHHHHHHc--C---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEE
Q psy7366         470 YSDREVRTLSGGNKRKLSTAIALL--G---------------NPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL  532 (566)
Q Consensus       470 ~~~~~~~~LSgGqkqrv~la~al~--~---------------~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~  532 (566)
                      ..++..+.+||||+|...+|++.+  .               .-.+++|||. +-+|....+..+++++++   |.-+|+
T Consensus       372 ~~s~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l---glQlii  447 (483)
T 3euj_A          372 WMRAESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL---DMQLLI  447 (483)
T ss_dssp             EEECCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT---TCEEEE
T ss_pred             eeecccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc---CCEEEE
Confidence            345678899999999766655533  1               2268999999 999999999999999987   888999


Q ss_pred             EccCHHHHHhhCCEEEEEE
Q psy7366         533 TSHNMEECEALCTKLTIMV  551 (566)
Q Consensus       533 vsHd~~~~~~~~drv~~l~  551 (566)
                      ++-+  .+..++|.++.+-
T Consensus       448 atP~--~i~p~v~~~~~~~  464 (483)
T 3euj_A          448 AAPE--NISPERGTTYKLV  464 (483)
T ss_dssp             EESS--SCCCSSSEEEECC
T ss_pred             ECcc--hhhhccCceEEEE
Confidence            9988  6667788888764

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=95.71  E-value=0.0044  Score=60.51  Aligned_cols=23  Identities=17%  Similarity=0.130  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      +++|+||+|||||||.+.|++.+
T Consensus         3 li~I~G~~GSGKSTla~~La~~~   25 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQET   25 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHhcC
Confidence            68999999999999999998754

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=95.70  E-value=0.0045  Score=56.41  Aligned_cols=23  Identities=26%  Similarity=0.479  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      +++|+|++||||||+.+.|+..+
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l   28 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDL   28 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHc
Confidence            58899999999999999998654

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=95.68  E-value=0.0055  Score=56.90  Aligned_cols=23  Identities=26%  Similarity=0.424  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      +++|.|+.||||||+.+.|+..+
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l   24 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKL   24 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHHhc
Confidence            68999999999999999999743

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=95.66  E-value=0.0053  Score=57.07  Aligned_cols=22  Identities=32%  Similarity=0.436  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHCCC
Q psy7366         375 FGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       375 ~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      +.|+||+|||||||++.|....
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~~   25 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            6799999999999999987543

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=95.65  E-value=0.022  Score=70.09  Aligned_cols=138  Identities=14%  Similarity=0.136  Sum_probs=78.4

Q ss_pred             EeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcC
Q psy7366         369 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRN  448 (566)
Q Consensus       369 i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~  448 (566)
                      +++|+++.|.||+|+|||||...++.......+                  .+.|+.-+..+.+   +     + .    
T Consensus       380 l~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~------------------~vlyis~E~s~~~---~-----~-a----  428 (2050)
T 3cmu_A          380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK------------------TCAFIDAEHALDP---I-----Y-A----  428 (2050)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTC------------------CEEEECTTSCCCH---H-----H-H----
T ss_pred             ccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCC------------------eEEEEEcCCCHHH---H-----H-H----
Confidence            899999999999999999998777643322111                  2444443322110   0     0 0    


Q ss_pred             CCchHHHHHHHHHHHHcCCC--CccccCcCcCChhHHHHHHHHHHHc--CCCCEEEEeCCCCCCC-H------------H
Q psy7366         449 VPSVLLNTIVNESLNKFALG--HYSDREVRTLSGGNKRKLSTAIALL--GNPPLIFLDEPTSGMD-P------------G  511 (566)
Q Consensus       449 ~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgGqkqrv~la~al~--~~p~lllLDEPt~gLD-~------------~  511 (566)
                                    +.++++  ...  .....+.  .+-+.+++.++  .+|+++++|.-++-.. .            .
T Consensus       429 --------------~~lGvd~~~L~--I~~~~~~--e~il~~~~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~  490 (2050)
T 3cmu_A          429 --------------RKLGVDIDNLL--CSQPDTG--EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGL  490 (2050)
T ss_dssp             --------------HHTTCCTTTCE--EECCSSH--HHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTH
T ss_pred             --------------HHcCCCHHHeE--EeCCCCH--HHHHHHHHHHHHhcCCcEEEECCHHHhhcccccccccccchhhH
Confidence                          111211  100  0011122  22344555553  5799999998876542 1            1


Q ss_pred             HHHHHHHHHHHH---Hh-CCcEEEEEccCHH----------------HHHhhCCEEEEEECCEE
Q psy7366         512 ARRFLWTCIERA---VS-EGRCVILTSHNME----------------ECEALCTKLTIMVNGQF  555 (566)
Q Consensus       512 ~~~~l~~~l~~~---~~-~g~tvl~vsHd~~----------------~~~~~~drv~~l~~G~i  555 (566)
                      ..+.+.+.++.+   ++ .+++||+++|-..                -+..+||-++.|+....
T Consensus       491 q~R~is~~Lr~L~~lake~~i~VIlinQl~~~vg~~~g~p~~psGg~ale~~ADv~l~L~R~~~  554 (2050)
T 3cmu_A          491 AARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGA  554 (2050)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCSSCCEECSSHHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHcCCeEEEEeecccccccccCCCcCCCCcchhhhhCCEEEEEEeccc
Confidence            123344555555   34 4999999988432                35678899999876553

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=95.64  E-value=0.021  Score=50.30  Aligned_cols=40  Identities=10%  Similarity=0.050  Sum_probs=28.9

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcc
Q psy7366         495 NPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH  535 (566)
Q Consensus       495 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsH  535 (566)
                      +..+|++||.- .|++..+..+.+.+.+....+..+|++|.
T Consensus        75 ~~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn  114 (143)
T 3co5_A           75 EGGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCS  114 (143)
T ss_dssp             TTSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEE
T ss_pred             CCCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecC
Confidence            45789999964 67888888888888765333566666665

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=95.63  E-value=0.01  Score=54.44  Aligned_cols=36  Identities=25%  Similarity=0.383  Sum_probs=25.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHH-CC----CCCCcc----EEEEcCcc
Q psy7366         374 CFGLLGLNGAGKTTTFKMLT-GA----IKPTSG----NAYVMNHS  409 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~-G~----~~~~~G----~i~~~g~~  409 (566)
                      .++|+|+.|+|||||++.+. +.    +.|+.|    .+.++|..
T Consensus        22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~   66 (184)
T 3ihw_A           22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQS   66 (184)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEE
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEE
Confidence            57899999999999996554 44    456655    45555543

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=95.57  E-value=0.0069  Score=56.34  Aligned_cols=26  Identities=35%  Similarity=0.468  Sum_probs=24.0

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         371 RGECFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       371 ~Ge~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      +|-+++|+|+.||||||+.+.|+..+
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            57889999999999999999999876

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=95.55  E-value=0.006  Score=55.77  Aligned_cols=25  Identities=36%  Similarity=0.169  Sum_probs=22.3

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHHC
Q psy7366         370 GRGECFGLLGLNGAGKTTTFKMLTG  394 (566)
Q Consensus       370 ~~Ge~~~l~G~NGsGKSTLl~~i~G  394 (566)
                      .++.++.|+|++||||||+.+.|+-
T Consensus         9 ~~~~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A            9 MLLPNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred             ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence            4577899999999999999999983

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=95.51  E-value=0.0073  Score=55.35  Aligned_cols=26  Identities=35%  Similarity=0.317  Sum_probs=21.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         371 RGECFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       371 ~Ge~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      .+.++.|+|+.||||||+.+.|+..+
T Consensus         4 ~~~~i~l~G~~GsGKst~a~~La~~l   29 (185)
T 3trf_A            4 NLTNIYLIGLMGAGKTSVGSQLAKLT   29 (185)
T ss_dssp             -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            35688999999999999999997543

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=95.51  E-value=0.007  Score=54.94  Aligned_cols=22  Identities=23%  Similarity=0.315  Sum_probs=20.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHC
Q psy7366         373 ECFGLLGLNGAGKTTTFKMLTG  394 (566)
Q Consensus       373 e~~~l~G~NGsGKSTLl~~i~G  394 (566)
                      .++.|.|++||||||+.+.|+.
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            3689999999999999999986

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=95.48  E-value=0.0038  Score=57.03  Aligned_cols=26  Identities=23%  Similarity=0.359  Sum_probs=22.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHCCCCC
Q psy7366         373 ECFGLLGLNGAGKTTTFKMLTGAIKP  398 (566)
Q Consensus       373 e~~~l~G~NGsGKSTLl~~i~G~~~~  398 (566)
                      .+++|+|++|||||||++.|+..++.
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~l~~   30 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAAAVR   30 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence            37899999999999999999887653

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=95.45  E-value=0.008  Score=56.14  Aligned_cols=28  Identities=25%  Similarity=0.510  Sum_probs=24.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHCCCCC
Q psy7366         371 RGECFGLLGLNGAGKTTTFKMLTGAIKP  398 (566)
Q Consensus       371 ~Ge~~~l~G~NGsGKSTLl~~i~G~~~~  398 (566)
                      +|-+++|.|+.||||||+.+.|+..+..
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~   30 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDWIEL   30 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence            4678999999999999999999875543

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=95.41  E-value=0.0083  Score=56.16  Aligned_cols=26  Identities=31%  Similarity=0.468  Sum_probs=23.2

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHHCC
Q psy7366         370 GRGECFGLLGLNGAGKTTTFKMLTGA  395 (566)
Q Consensus       370 ~~Ge~~~l~G~NGsGKSTLl~~i~G~  395 (566)
                      .+|-+++|.|+.||||||+.+.|+..
T Consensus         8 ~~~~~I~l~G~~GsGKST~~~~L~~~   33 (212)
T 2wwf_A            8 KKGKFIVFEGLDRSGKSTQSKLLVEY   33 (212)
T ss_dssp             BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            46789999999999999999999853

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=95.40  E-value=0.0084  Score=55.32  Aligned_cols=27  Identities=19%  Similarity=0.244  Sum_probs=23.2

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         370 GRGECFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       370 ~~Ge~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      .++-+++|+|+.||||||+.+.|+..+
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~La~~l   33 (196)
T 2c95_A            7 KKTNIIFVVGGPGSGKGTQCEKIVQKY   33 (196)
T ss_dssp             TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            356799999999999999999998543

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=95.36  E-value=0.0075  Score=60.04  Aligned_cols=36  Identities=22%  Similarity=0.204  Sum_probs=28.1

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcC
Q psy7366         370 GRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN  407 (566)
Q Consensus       370 ~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g  407 (566)
                      .+|.++.|.||+||||||+.+.|+..++  .|.+.+++
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~   66 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN   66 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence            4567899999999999999999986543  35566665

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=95.36  E-value=0.0088  Score=54.97  Aligned_cols=24  Identities=29%  Similarity=0.231  Sum_probs=21.2

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHCC
Q psy7366         372 GECFGLLGLNGAGKTTTFKMLTGA  395 (566)
Q Consensus       372 Ge~~~l~G~NGsGKSTLl~~i~G~  395 (566)
                      +.+++|+|+.||||||+.+.|+..
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~~   26 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVEK   26 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            568999999999999999998743

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=95.30  E-value=0.0092  Score=55.92  Aligned_cols=26  Identities=38%  Similarity=0.483  Sum_probs=23.4

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHHCC
Q psy7366         370 GRGECFGLLGLNGAGKTTTFKMLTGA  395 (566)
Q Consensus       370 ~~Ge~~~l~G~NGsGKSTLl~~i~G~  395 (566)
                      .+|-+++|+|+.||||||+.+.|+-.
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~L~~~   32 (215)
T 1nn5_A            7 RRGALIVLEGVDRAGKSTQSRKLVEA   32 (215)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            56889999999999999999999853

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=95.20  E-value=0.0077  Score=54.95  Aligned_cols=26  Identities=31%  Similarity=0.328  Sum_probs=18.2

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         371 RGECFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       371 ~Ge~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      ++.++.|.|+.||||||+.+.|+..+
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~~l   29 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHERL   29 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHHS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            56789999999999999999998543

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=95.20  E-value=0.00056  Score=75.67  Aligned_cols=47  Identities=13%  Similarity=0.244  Sum_probs=40.5

Q ss_pred             cccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHH
Q psy7366          88 VRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER  135 (566)
Q Consensus        88 ~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~  135 (566)
                      ...+|+|++|++..+.....++.+|+|||... |++.....|.++|.+
T Consensus       181 ~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~  227 (604)
T 3k1j_A          181 SGGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE  227 (604)
T ss_dssp             ---CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred             cCCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence            36799999999999999999999999999988 899999999888874

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=95.16  E-value=0.029  Score=52.21  Aligned_cols=52  Identities=21%  Similarity=0.268  Sum_probs=38.7

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCH----------HHHHhhCCEEEEEE
Q psy7366         495 NPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM----------EECEALCTKLTIMV  551 (566)
Q Consensus       495 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~----------~~~~~~~drv~~l~  551 (566)
                      +.+++++||--- +|+..    .+.++++...|+.||++.+|.          ..+..+||.|.-|+
T Consensus        81 ~~dvViIDEaqf-l~~~~----v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~  142 (191)
T 1xx6_A           81 DTEVIAIDEVQF-FDDEI----VEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ  142 (191)
T ss_dssp             TCSEEEECSGGG-SCTHH----HHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred             cCCEEEEECCCC-CCHHH----HHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence            579999999543 66543    345666666799999999864          66778899997664

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=95.14  E-value=0.01  Score=54.36  Aligned_cols=24  Identities=21%  Similarity=0.314  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAIK  397 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~~  397 (566)
                      ++.|.|+.||||||+.+.|+..+.
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l~   26 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            688999999999999999986543

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=95.13  E-value=0.011  Score=55.20  Aligned_cols=23  Identities=17%  Similarity=0.336  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      +++|.|++||||||+.+.|+..+
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~l   26 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAAL   26 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc
Confidence            79999999999999999998743

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=95.07  E-value=0.0045  Score=57.37  Aligned_cols=28  Identities=21%  Similarity=0.291  Sum_probs=24.0

Q ss_pred             EeCCcEEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         369 VGRGECFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       369 i~~Ge~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      +.++-+++|+|+.||||||+.+.|+..+
T Consensus         9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l   36 (199)
T 2bwj_A            9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY   36 (199)
T ss_dssp             HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            4567799999999999999999998643

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=95.04  E-value=0.012  Score=58.14  Aligned_cols=23  Identities=35%  Similarity=0.593  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      .++|+|++|+|||||++.++|..
T Consensus         5 kI~lvG~~nvGKSTL~n~L~g~~   27 (272)
T 3b1v_A            5 EIALIGNPNSGKTSLFNLITGHN   27 (272)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            58999999999999999999964

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=95.03  E-value=0.0058  Score=55.20  Aligned_cols=51  Identities=27%  Similarity=0.268  Sum_probs=34.8

Q ss_pred             CCcchHHHHHhccccCCC-cc--CCCCCcccccccceeEEcCCCCCCCCCCHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ-KV--PGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEF   55 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~-~~--~~~~~~~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~   55 (566)
                      .||||++|++++++ +.+ .+  ++.... .... .-.+++|++.++ .+||.||+.+
T Consensus        44 aGKTTLlr~l~g~l-~~~G~V~~~g~~i~-~~~~-~~~~~~q~~~l~-~ltv~e~l~~   97 (158)
T 1htw_A           44 AGKTTLTRGMLQGI-GHQGNVKSPTYTLV-EEYN-IAGKMIYHFDLY-RLADPEELEF   97 (158)
T ss_dssp             SSHHHHHHHHHHHT-TCCSCCCCCTTTCE-EEEE-ETTEEEEEEECT-TCSCTTHHHH
T ss_pred             CCHHHHHHHHHHhC-CCCCeEEECCEeee-eecc-CCCcceeccccc-cCCcHHHHHH
Confidence            59999999999998 654 22  222211 1111 113799999988 8999999965

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=94.97  E-value=0.0051  Score=63.43  Aligned_cols=64  Identities=16%  Similarity=0.102  Sum_probs=48.7

Q ss_pred             HHHHHHHHcCCCccc----ccccccCChhHHHHHHHH----HHH-hCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHH
Q psy7366          70 IVNESLNKFALGHYS----DREVRTLSGGNKRKLSTA----IAL-LGNPPLIFLDEPTSGMDPGARRFLWTCIERAV  137 (566)
Q Consensus        70 ~~~~~l~~~gl~~~~----~~~~~~LSgG~kqrl~iA----~al-~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~  137 (566)
                      .+.++++.+++....    ..++..+|+++++++.++    +++ ..+|++    +|+|++|..+.+.|++.|.++.
T Consensus       280 ~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~~l  352 (364)
T 2qtf_A          280 SSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQLA  352 (364)
T ss_dssp             HHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHHHh
Confidence            456778888765433    556788899988888877    555 444554    8999999999999999998753

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=94.91  E-value=0.012  Score=54.05  Aligned_cols=23  Identities=26%  Similarity=0.369  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      .++|+|+.|+|||||++.+.+..
T Consensus        50 ~i~vvG~~g~GKSsll~~l~~~~   72 (193)
T 2ged_A           50 SIIIAGPQNSGKTSLLTLLTTDS   72 (193)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68899999999999999999865

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=94.90  E-value=0.012  Score=53.69  Aligned_cols=23  Identities=48%  Similarity=0.535  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      .++|+|++|+|||||++.+.+..
T Consensus        18 ki~ivG~~~vGKSsL~~~l~~~~   40 (181)
T 1fzq_A           18 RILLLGLDNAGKTTLLKQLASED   40 (181)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58899999999999999999863

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=94.82  E-value=0.016  Score=54.83  Aligned_cols=26  Identities=31%  Similarity=0.298  Sum_probs=22.6

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         371 RGECFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       371 ~Ge~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      +|-+++|+|+.||||||+.+.|+..+
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~~l   28 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQERF   28 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            46689999999999999999998643

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=94.81  E-value=0.015  Score=55.35  Aligned_cols=27  Identities=26%  Similarity=0.239  Sum_probs=22.0

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         370 GRGECFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       370 ~~Ge~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      .++.+++|+|+.||||||+.+.|+..+
T Consensus         5 ~~~~~I~l~G~~GsGKsT~a~~La~~l   31 (227)
T 1zd8_A            5 ARLLRAVIMGAPGSGKGTVSSRITTHF   31 (227)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            456789999999999999999998533

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=94.80  E-value=0.14  Score=53.53  Aligned_cols=26  Identities=27%  Similarity=0.277  Sum_probs=23.1

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHHCC
Q psy7366         370 GRGECFGLLGLNGAGKTTTFKMLTGA  395 (566)
Q Consensus       370 ~~Ge~~~l~G~NGsGKSTLl~~i~G~  395 (566)
                      .+..++.|+|++||||||+.+.|+..
T Consensus       256 ~~~~lIil~G~pGSGKSTla~~L~~~  281 (416)
T 3zvl_A          256 PNPEVVVAVGFPGAGKSTFIQEHLVS  281 (416)
T ss_dssp             SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            56789999999999999999999753

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=94.76  E-value=0.014  Score=51.84  Aligned_cols=24  Identities=29%  Similarity=0.432  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAIK  397 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~~  397 (566)
                      .++|+|+.|+|||||++.+.|...
T Consensus         4 ki~~vG~~~~GKSsli~~l~~~~~   27 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFGGVED   27 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCC--
T ss_pred             EEEEECCCCCCHHHHHHHHcCccc
Confidence            478999999999999999988653

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=94.73  E-value=0.017  Score=51.69  Aligned_cols=23  Identities=35%  Similarity=0.450  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      .++|+|+.|+|||||++.+.|..
T Consensus         6 ki~i~G~~~vGKSsl~~~l~~~~   28 (175)
T 2nzj_A            6 RVVLLGDPGVGKTSLASLFAGKQ   28 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC-
T ss_pred             EEEEECCCCccHHHHHHHHhcCC
Confidence            47899999999999999999864

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=94.71  E-value=0.016  Score=53.16  Aligned_cols=23  Identities=35%  Similarity=0.504  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      +++|.|+.||||||+.+.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l   24 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYL   24 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999998643

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=94.69  E-value=0.016  Score=54.47  Aligned_cols=22  Identities=36%  Similarity=0.478  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGA  395 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~  395 (566)
                      +++|+|+.||||||+.+.|+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEK   23 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999643

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=94.68  E-value=0.018  Score=51.21  Aligned_cols=22  Identities=18%  Similarity=0.363  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGA  395 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~  395 (566)
                      .++++|+.|+|||||++.+.+-
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            5 RVAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999999974

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=94.64  E-value=0.019  Score=53.37  Aligned_cols=25  Identities=36%  Similarity=0.262  Sum_probs=21.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHCC
Q psy7366         371 RGECFGLLGLNGAGKTTTFKMLTGA  395 (566)
Q Consensus       371 ~Ge~~~l~G~NGsGKSTLl~~i~G~  395 (566)
                      .+-+++|+|+.||||||+.+.|+..
T Consensus        19 ~~~~I~l~G~~GsGKST~a~~La~~   43 (201)
T 2cdn_A           19 SHMRVLLLGPPGAGKGTQAVKLAEK   43 (201)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4558999999999999999999754

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=94.63  E-value=0.018  Score=51.68  Aligned_cols=22  Identities=27%  Similarity=0.368  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGA  395 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~  395 (566)
                      +++|.|+.||||||+.+.|+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRS   23 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999999763

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=94.63  E-value=0.019  Score=51.20  Aligned_cols=23  Identities=30%  Similarity=0.348  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      .++|+|+.|+|||||++.+.+..
T Consensus         4 ki~ivG~~~~GKSsli~~l~~~~   26 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFGGLQ   26 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHCC-
T ss_pred             EEEEECCCCCCHHHHHHHHHhcc
Confidence            47899999999999999998754

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=94.60  E-value=0.015  Score=52.41  Aligned_cols=22  Identities=32%  Similarity=0.332  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGA  395 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~  395 (566)
                      +++|+|+.||||||+.+.|+..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~~   25 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELARA   25 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6889999999999999999854

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=94.60  E-value=6.6e-06  Score=79.47  Aligned_cols=63  Identities=11%  Similarity=0.112  Sum_probs=31.8

Q ss_pred             HhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHh-----CCCEEEEecCChhHHHhhcCEEEEEeCCE
Q psy7366         105 LLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS-----EGRCVILTSHNMEECEALCTKLTIMVNGQ  167 (566)
Q Consensus       105 l~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~-----~g~tviiisH~~~~~~~~~d~i~vl~~G~  167 (566)
                      ++..|+..+++|++...|..+.+.+.+.|++...     ....+++++|+++++.+-+++++...+++
T Consensus       145 ~v~~~~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e~~~~~l~~~i~~~~~~  212 (231)
T 3lnc_A          145 FIMPPSMEELRRRLCGRRADDSEVVEARLKGAAFEISHCEAYDYVIVNEDIEETADRISNILRAEQMK  212 (231)
T ss_dssp             EEECSCHHHHHHC--------------CHHHHHHHHTTGGGSSEEEECSSHHHHHHHHHHHHHHHHTB
T ss_pred             EEECCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCHHHHHHHHHHHHHHHhhc
Confidence            4567788889999999998887777766654321     13467788888888777666665433333

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=94.59  E-value=0.016  Score=51.46  Aligned_cols=23  Identities=17%  Similarity=0.286  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         7 ~i~v~G~~~~GKssl~~~l~~~~   29 (168)
T 1z2a_A            7 KMVVVGNGAVGKSSMIQRYCKGI   29 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            47899999999999999998643

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=94.59  E-value=0.019  Score=51.68  Aligned_cols=23  Identities=30%  Similarity=0.430  Sum_probs=20.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHCC
Q psy7366         373 ECFGLLGLNGAGKTTTFKMLTGA  395 (566)
Q Consensus       373 e~~~l~G~NGsGKSTLl~~i~G~  395 (566)
                      ++++|+|+.||||||+.+.|+..
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~~   30 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGLA   30 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999999753

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=94.58  E-value=0.016  Score=51.03  Aligned_cols=23  Identities=22%  Similarity=0.277  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      .++++|+.|+|||||++.+.+-.
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~   25 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKKR   25 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998754

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=94.55  E-value=0.018  Score=52.71  Aligned_cols=24  Identities=25%  Similarity=0.256  Sum_probs=21.1

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHCC
Q psy7366         372 GECFGLLGLNGAGKTTTFKMLTGA  395 (566)
Q Consensus       372 Ge~~~l~G~NGsGKSTLl~~i~G~  395 (566)
                      ..+++|+|+.||||||+.+.|+..
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~~   29 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999999753

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=94.54  E-value=0.016  Score=51.06  Aligned_cols=23  Identities=22%  Similarity=0.251  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      .++++|+.|+|||||++.+.+-.
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~~   27 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQNH   27 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            47899999999999999998653

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=94.53  E-value=0.018  Score=51.80  Aligned_cols=23  Identities=17%  Similarity=0.322  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        11 ~i~v~G~~~~GKssl~~~l~~~~   33 (181)
T 3tw8_B           11 KLLIIGDSGVGKSSLLLRFADNT   33 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHCSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998754

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=94.53  E-value=0.022  Score=51.13  Aligned_cols=25  Identities=24%  Similarity=0.356  Sum_probs=21.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHCC
Q psy7366         371 RGECFGLLGLNGAGKTTTFKMLTGA  395 (566)
Q Consensus       371 ~Ge~~~l~G~NGsGKSTLl~~i~G~  395 (566)
                      +.-.++|+|+.|+|||||++.+.+-
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4457899999999999999999874

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=94.53  E-value=0.018  Score=52.80  Aligned_cols=24  Identities=21%  Similarity=0.261  Sum_probs=20.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         373 ECFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       373 e~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      -.++|+|+.|+|||||++.+.+-.
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 1svi_A           24 PEIALAGRSNVGKSSFINSLINRK   47 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            358899999999999999999863

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=94.53  E-value=0.019  Score=53.42  Aligned_cols=25  Identities=32%  Similarity=0.280  Sum_probs=21.4

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         372 GECFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       372 Ge~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      ..+++|.|+.||||||+.+.|+..+
T Consensus        15 ~~~I~l~G~~GsGKsT~~~~L~~~~   39 (203)
T 1ukz_A           15 VSVIFVLGGPGAGKGTQCEKLVKDY   39 (203)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHc
Confidence            4579999999999999999998543

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=94.52  E-value=0.019  Score=53.51  Aligned_cols=23  Identities=30%  Similarity=0.520  Sum_probs=20.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHCC
Q psy7366         373 ECFGLLGLNGAGKTTTFKMLTGA  395 (566)
Q Consensus       373 e~~~l~G~NGsGKSTLl~~i~G~  395 (566)
                      -++||+|+.||||||+.+.|+..
T Consensus        13 ~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           13 MVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            47999999999999999999854

>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14

Probab=94.51  E-value=0.069  Score=51.04  Aligned_cols=52  Identities=17%  Similarity=0.162  Sum_probs=40.3

Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccC----------HHHHHhhCCEEEEEE
Q psy7366         494 GNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN----------MEECEALCTKLTIMV  551 (566)
Q Consensus       494 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd----------~~~~~~~~drv~~l~  551 (566)
                      .+.+++++||----.|      +.++++.+.+.|+.||++.+|          ...+..+||.|.-|+
T Consensus        89 ~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk  150 (234)
T 2orv_A           89 LGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT  150 (234)
T ss_dssp             TTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred             ccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence            6789999999877654      555555555679999999999          456667899998764

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=94.50  E-value=0.019  Score=54.04  Aligned_cols=22  Identities=36%  Similarity=0.448  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGA  395 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~  395 (566)
                      .++|+||.||||||+.+.|+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEK   23 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999753

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=94.48  E-value=0.017  Score=54.78  Aligned_cols=26  Identities=15%  Similarity=0.143  Sum_probs=21.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         371 RGECFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       371 ~Ge~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      .+-++.|+|+.||||||+.+.|+-.+
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~l   29 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTKY   29 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            34578999999999999999998543

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=94.47  E-value=0.019  Score=52.42  Aligned_cols=23  Identities=17%  Similarity=0.296  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        25 ~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 3pqc_A           25 EVAFVGRSNVGKSSLLNALFNRK   47 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCc
Confidence            68899999999999999999864

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=94.46  E-value=0.013  Score=53.10  Aligned_cols=22  Identities=45%  Similarity=0.487  Sum_probs=19.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHC
Q psy7366         373 ECFGLLGLNGAGKTTTFKMLTG  394 (566)
Q Consensus       373 e~~~l~G~NGsGKSTLl~~i~G  394 (566)
                      -.++|+|++|+|||||++.+.+
T Consensus        19 ~~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           19 LRILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             EEEEEEEETTSSHHHHHHHTCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            3688999999999999999985

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=94.45  E-value=0.031  Score=56.11  Aligned_cols=47  Identities=17%  Similarity=0.165  Sum_probs=34.5

Q ss_pred             ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHC----CCCCCccEEEEcC
Q psy7366         360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG----AIKPTSGNAYVMN  407 (566)
Q Consensus       360 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G----~~~~~~G~i~~~g  407 (566)
                      ..+++..+.+ .|.-++|+|++|+||||+...+.+    ++..|...|...+
T Consensus       133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~dD~~~i~~~~  183 (314)
T 1ko7_A          133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKRGHRLVADDNVEIREIS  183 (314)
T ss_dssp             EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHTTCEEEESSEEEEEESS
T ss_pred             eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhcCCceecCCeEEEEEcC
Confidence            4567777777 788999999999999999988886    3333444444433

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=94.45  E-value=0.021  Score=55.72  Aligned_cols=25  Identities=36%  Similarity=0.266  Sum_probs=22.2

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHCC
Q psy7366         371 RGECFGLLGLNGAGKTTTFKMLTGA  395 (566)
Q Consensus       371 ~Ge~~~l~G~NGsGKSTLl~~i~G~  395 (566)
                      ++.++.|+|++||||||+.+.|+..
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~~   27 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAKI   27 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence            4668999999999999999999864

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=94.43  E-value=0.018  Score=50.80  Aligned_cols=22  Identities=23%  Similarity=0.282  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGA  395 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~  395 (566)
                      .++|+|+.|+|||||++.+.+-
T Consensus         5 ~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999998754

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=94.43  E-value=0.017  Score=51.38  Aligned_cols=23  Identities=26%  Similarity=0.303  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A            8 KVCLLGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            47899999999999999998764

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=94.42  E-value=0.017  Score=51.13  Aligned_cols=22  Identities=18%  Similarity=0.175  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGA  395 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~  395 (566)
                      .++++|+.|+|||||++.+.+-
T Consensus         6 ~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            6 KVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999999864

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=94.40  E-value=0.02  Score=52.05  Aligned_cols=23  Identities=30%  Similarity=0.333  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~   25 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGKK   25 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCcC
Confidence            47899999999999999999864

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=94.38  E-value=0.018  Score=52.72  Aligned_cols=23  Identities=39%  Similarity=0.424  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHCC
Q psy7366         373 ECFGLLGLNGAGKTTTFKMLTGA  395 (566)
Q Consensus       373 e~~~l~G~NGsGKSTLl~~i~G~  395 (566)
                      -+++|+|+.||||||+.+.|+..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~   25 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKA   25 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999753

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=94.37  E-value=0.019  Score=51.05  Aligned_cols=22  Identities=27%  Similarity=0.176  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGA  395 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~  395 (566)
                      .++|+|+.|+|||||++.+.+-
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            8 KVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4789999999999999999865

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=94.37  E-value=0.017  Score=51.36  Aligned_cols=23  Identities=22%  Similarity=0.258  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1g16_A            5 KILLIGDSGVGKSCLLVRFVEDK   27 (170)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC
Confidence            47899999999999999998654

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=94.36  E-value=0.018  Score=51.17  Aligned_cols=23  Identities=22%  Similarity=0.216  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      .++++|+.|+|||||++.+.+-.
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVSND   27 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998643

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=94.33  E-value=0.02  Score=51.57  Aligned_cols=23  Identities=26%  Similarity=0.303  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        10 ~i~v~G~~~~GKSsli~~l~~~~   32 (182)
T 1ky3_A           10 KVIILGDSGVGKTSLMHRYVNDK   32 (182)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            48899999999999999888654

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=94.32  E-value=0.018  Score=50.98  Aligned_cols=22  Identities=23%  Similarity=0.312  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGA  395 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~  395 (566)
                      .++|+|+.|+|||||++.+.+-
T Consensus         5 ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999999864

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=94.29  E-value=0.019  Score=51.59  Aligned_cols=23  Identities=26%  Similarity=0.280  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         9 ~i~v~G~~~~GKSsli~~l~~~~   31 (177)
T 1wms_A            9 KVILLGDGGVGKSSLMNRYVTNK   31 (177)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            47899999999999999998643

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=94.23  E-value=0.023  Score=55.10  Aligned_cols=23  Identities=17%  Similarity=0.248  Sum_probs=20.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHCC
Q psy7366         373 ECFGLLGLNGAGKTTTFKMLTGA  395 (566)
Q Consensus       373 e~~~l~G~NGsGKSTLl~~i~G~  395 (566)
                      -+++|.|+.||||||+.+.|+..
T Consensus        23 ~iI~I~G~~GSGKST~a~~L~~~   45 (252)
T 1uj2_A           23 FLIGVSGGTASGKSSVCAKIVQL   45 (252)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999999764

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=94.22  E-value=0.021  Score=51.36  Aligned_cols=22  Identities=18%  Similarity=0.238  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGA  395 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~  395 (566)
                      .++|+|+.|+|||||++.+.+-
T Consensus        11 ~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A           11 KLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999999875

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=94.21  E-value=0.015  Score=57.95  Aligned_cols=26  Identities=19%  Similarity=0.317  Sum_probs=19.2

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         371 RGECFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       371 ~Ge~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      ++-++||.||+||||||+.+.|...+
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~l   29 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIF   29 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHH
Confidence            34589999999999999999998643

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=94.17  E-value=0.009  Score=63.27  Aligned_cols=44  Identities=27%  Similarity=0.345  Sum_probs=33.7

Q ss_pred             ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEE
Q psy7366         360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY  404 (566)
Q Consensus       360 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~  404 (566)
                      .+++.+ +.+-+|+.++|+|++|+|||||++.|+.......+.|.
T Consensus       140 r~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~  183 (473)
T 1sky_E          140 KVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGIS  183 (473)
T ss_dssp             HHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCE
T ss_pred             hHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEE
Confidence            355555 67889999999999999999999999876543334443

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=94.17  E-value=0.0088  Score=57.16  Aligned_cols=44  Identities=23%  Similarity=0.319  Sum_probs=29.5

Q ss_pred             HcCCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEEcc
Q psy7366         492 LLGNPPLIFLDEPTSG-MDPGARRFLWTCIERAVSEGRCVILTSH  535 (566)
Q Consensus       492 l~~~p~lllLDEPt~g-LD~~~~~~l~~~l~~~~~~g~tvl~vsH  535 (566)
                      +...|+++|+|||-.- .+.......++.+......|..|+.++|
T Consensus        81 L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~N  125 (228)
T 2r8r_A           81 LKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVN  125 (228)
T ss_dssp             HHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEE
T ss_pred             HhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEcc
Confidence            3458999999998642 4433233344555555667889999998

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=94.16  E-value=0.025  Score=56.66  Aligned_cols=23  Identities=26%  Similarity=0.420  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      .++|+|++|+|||||++.|.|..
T Consensus         9 ~V~ivG~~nvGKSTLln~l~g~~   31 (301)
T 1wf3_A            9 FVAIVGKPNVGKSTLLNNLLGVK   31 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCc
Confidence            58999999999999999999863

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=94.15  E-value=0.028  Score=55.10  Aligned_cols=30  Identities=23%  Similarity=0.389  Sum_probs=23.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHCCCCCCccE
Q psy7366         373 ECFGLLGLNGAGKTTTFKMLTGAIKPTSGN  402 (566)
Q Consensus       373 e~~~l~G~NGsGKSTLl~~i~G~~~~~~G~  402 (566)
                      -.++++|.+|+|||||++.|.|......|.
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~  129 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA  129 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-----
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccCC
Confidence            578999999999999999999977654443

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=94.15  E-value=0.025  Score=55.22  Aligned_cols=23  Identities=43%  Similarity=0.429  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      .++|+|+.|||||||++.++|..
T Consensus         3 kI~lvG~~n~GKSTL~n~L~g~~   25 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALTNAN   25 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            57899999999999999999974

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=94.12  E-value=0.026  Score=53.66  Aligned_cols=22  Identities=27%  Similarity=0.404  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGA  395 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~  395 (566)
                      +++|.|+.||||||+.+.|+-.
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~   23 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDK   23 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999999753

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=94.11  E-value=0.04  Score=63.30  Aligned_cols=26  Identities=35%  Similarity=0.451  Sum_probs=22.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHCCCCC
Q psy7366         373 ECFGLLGLNGAGKTTTFKMLTGAIKP  398 (566)
Q Consensus       373 e~~~l~G~NGsGKSTLl~~i~G~~~~  398 (566)
                      ..+.|.||+|+|||++.+.|+.....
T Consensus       589 ~~vLl~Gp~GtGKT~lA~~la~~~~~  614 (854)
T 1qvr_A          589 GSFLFLGPTGVGKTELAKTLAATLFD  614 (854)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            47889999999999999999987654

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=94.07  E-value=0.028  Score=50.51  Aligned_cols=23  Identities=22%  Similarity=0.231  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         8 ki~v~G~~~~GKssl~~~l~~~~   30 (178)
T 2hxs_A            8 KIVVLGDGASGKTSLTTCFAQET   30 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHGGG
T ss_pred             EEEEECcCCCCHHHHHHHHHhCc
Confidence            47899999999999999998754

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=94.06  E-value=0.025  Score=55.92  Aligned_cols=22  Identities=32%  Similarity=0.628  Sum_probs=20.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHC
Q psy7366         373 ECFGLLGLNGAGKTTTFKMLTG  394 (566)
Q Consensus       373 e~~~l~G~NGsGKSTLl~~i~G  394 (566)
                      -+++|+|+.||||||+.+.|+.
T Consensus        76 ~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           76 YVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999983

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=94.05  E-value=0.024  Score=50.46  Aligned_cols=22  Identities=45%  Similarity=0.555  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGA  395 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~  395 (566)
                      .++|+|+.|+|||||++.+.+-
T Consensus         9 ~i~v~G~~~~GKssl~~~l~~~   30 (171)
T 1upt_A            9 RILILGLDGAGKTTILYRLQVG   30 (171)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5889999999999999999753

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=94.04  E-value=0.026  Score=51.56  Aligned_cols=25  Identities=24%  Similarity=0.251  Sum_probs=21.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCCCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAIKP  398 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~~~  398 (566)
                      .++|+|+.|+|||||++.+.|....
T Consensus        16 ki~vvG~~~~GKssL~~~l~~~~~~   40 (198)
T 3t1o_A           16 KIVYYGPGLSGKTTNLKWIYSKVPE   40 (198)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred             EEEEECCCCCCHHHHHHHHHhhccc
Confidence            4789999999999999999987643

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=94.04  E-value=0.024  Score=50.23  Aligned_cols=22  Identities=23%  Similarity=0.280  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGA  395 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~  395 (566)
                      .++|+|+.|+|||||++.+.+-
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            8 KLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999999863

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=94.04  E-value=0.024  Score=51.36  Aligned_cols=23  Identities=22%  Similarity=0.277  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         6 ki~v~G~~~~GKSsli~~l~~~~   28 (189)
T 4dsu_A            6 KLVVVGADGVGKSALTIQLIQNH   28 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            47899999999999999998643

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=94.04  E-value=0.024  Score=51.97  Aligned_cols=23  Identities=30%  Similarity=0.358  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~~   49 (193)
T 2oil_A           27 KVVLIGESGVGKTNLLSRFTRNE   49 (193)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            47899999999999999998743

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=94.01  E-value=0.021  Score=58.88  Aligned_cols=22  Identities=45%  Similarity=0.750  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGA  395 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~  395 (566)
                      .++|+|++|+|||||++.|+|.
T Consensus         3 ~v~IVG~pnvGKSTL~n~L~~~   24 (368)
T 2dby_A            3 AVGIVGLPNVGKSTLFNALTRA   24 (368)
T ss_dssp             SEEEECCSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3789999999999999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	566
d1vpla_	238	c.37.1.12 (A:) Putative ABC transporter TM0544 {Th	2e-57
d1vpla_	238	c.37.1.12 (A:) Putative ABC transporter TM0544 {Th	3e-31
d1v43a3	239	c.37.1.12 (A:7-245) Hypothetical protein PH0022, N	2e-51
d1v43a3	239	c.37.1.12 (A:7-245) Hypothetical protein PH0022, N	1e-30
d1ji0a_	240	c.37.1.12 (A:) Branched chain aminoacid ABC transp	1e-47
d1ji0a_	240	c.37.1.12 (A:) Branched chain aminoacid ABC transp	3e-26
d1g6ha_	254	c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann	2e-47
d1g6ha_	254	c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann	5e-24
d3dhwc1	240	c.37.1.12 (C:1-240) Methionine import ATP-binding	1e-46
d3dhwc1	240	c.37.1.12 (C:1-240) Methionine import ATP-binding	2e-25
d1b0ua_	258	c.37.1.12 (A:) ATP-binding subunit of the histidin	7e-44
d1b0ua_	258	c.37.1.12 (A:) ATP-binding subunit of the histidin	5e-24
d1g2912	240	c.37.1.12 (1:1-240) Maltose transport protein MalK	4e-42
d1g2912	240	c.37.1.12 (1:1-240) Maltose transport protein MalK	1e-24
d2awna2	232	c.37.1.12 (A:4-235) Maltose transport protein MalK	4e-42
d2awna2	232	c.37.1.12 (A:4-235) Maltose transport protein MalK	2e-22
d1l2ta_	230	c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann	3e-40
d1l2ta_	230	c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann	3e-20
d1oxxk2	242	c.37.1.12 (K:1-242) Glucose transport protein GlcV	1e-39
d1oxxk2	242	c.37.1.12 (K:1-242) Glucose transport protein GlcV	8e-19
d1sgwa_	200	c.37.1.12 (A:) Putative ABC transporter PF0895 {Py	1e-37
d1sgwa_	200	c.37.1.12 (A:) Putative ABC transporter PF0895 {Py	1e-17
d1l7vc_	231	c.37.1.12 (C:) ABC transporter involved in vitamin	3e-37
d1l7vc_	231	c.37.1.12 (C:) ABC transporter involved in vitamin	2e-18
d3d31a2	229	c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor	7e-35
d3d31a2	229	c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor	5e-16
d1r0wa_	281	c.37.1.12 (A:) Cystic fibrosis transmembrane condu	3e-33
d1r0wa_	281	c.37.1.12 (A:) Cystic fibrosis transmembrane condu	3e-18
d1mv5a_	242	c.37.1.12 (A:) Multidrug resistance ABC transporte	3e-31
d1mv5a_	242	c.37.1.12 (A:) Multidrug resistance ABC transporte	7e-13
d2onka1	240	c.37.1.12 (A:1-240) Molybdate/tungstate import ATP	2e-30
d2onka1	240	c.37.1.12 (A:1-240) Molybdate/tungstate import ATP	7e-15
d3b60a1	253	c.37.1.12 (A:329-581) Multidrug resistance ABC tra	8e-30
d3b60a1	253	c.37.1.12 (A:329-581) Multidrug resistance ABC tra	1e-13
d2hyda1	255	c.37.1.12 (A:324-578) Putative multidrug export AT	8e-30
d2hyda1	255	c.37.1.12 (A:324-578) Putative multidrug export AT	9e-13
d2pmka1	241	c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro	5e-28
d2pmka1	241	c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro	3e-13
d1jj7a_	251	c.37.1.12 (A:) Peptide transporter Tap1, C-termina	2e-26
d1jj7a_	251	c.37.1.12 (A:) Peptide transporter Tap1, C-termina	1e-10
d1ye8a1	178	c.37.1.11 (A:1-178) Hypothetical kinase-like prote	2e-14
g1ii8.1	369	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	1e-09
g1ii8.1	369	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	1e-09
g1f2t.1	292	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	1e-08
g1f2t.1	292	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	1e-08
d1w1wa_	427	c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac	8e-04
d1w1wa_	427	c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac	8e-04

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

 Score =  190 bits (484), Expect = 2e-57
 Identities = 80/224 (35%), Positives = 114/224 (50%), Gaps = 4/224 (1%)

Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
           +VVK L K      G K  +  ISF +  GE FGL+G NGAGKTTT ++++  IKP+SG 
Sbjct: 3   VVVKDLRKRI----GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGI 58

Query: 403 AYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL 462
             V   ++ +    VR  I Y P+       +   E+L F +      S  +  +V  + 
Sbjct: 59  VTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERAT 118

Query: 463 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER 522
               LG      V T S G  RKL  A AL+ NP L  LDEPTSG+D    R +   +++
Sbjct: 119 EIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQ 178

Query: 523 AVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
           A  EG  ++++SHNM E E LC ++ ++ NG     G+   LK 
Sbjct: 179 ASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 222

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

 Score =  119 bits (299), Expect = 3e-31
 Identities = 48/147 (32%), Positives = 71/147 (48%)

Query: 34  IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSG 93
           I Y P+       +   E+L F +      S  +  +V  +     LG      V T S 
Sbjct: 77  ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSK 136

Query: 94  GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEEC 153
           G  RKL  A AL+ NP L  LDEPTSG+D    R +   +++A  EG  ++++SHNM E 
Sbjct: 137 GMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEV 196

Query: 154 EALCTKLTIMVNGQFTCLGSATHLKSK 180
           E LC ++ ++ NG     G+   LK +
Sbjct: 197 EFLCDRIALIHNGTIVETGTVEELKER 223

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

 Score =  174 bits (442), Expect = 2e-51
 Identities = 56/221 (25%), Positives = 104/221 (47%), Gaps = 6/221 (2%)

Query: 345 VKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 404
           ++ L K +    G   AVN+++  +  GE   LLG +G GKTTT +M+ G  +PT G  Y
Sbjct: 9   LENLTKRF----GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY 64

Query: 405 VMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNK 464
             +  +       R  I    Q  A+   +T  E++ F  +++  P   ++  V  +   
Sbjct: 65  FGDRDVTYLPPKDR-NISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAEL 123

Query: 465 FALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAV 524
             +    +R    LSGG +++++ A A++  P ++ +DEP S +D   R  +   I++  
Sbjct: 124 LQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQ 183

Query: 525 SE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
            +     I  +H+  E   +  ++ +M  GQ   +GS T +
Sbjct: 184 QKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEV 224

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

 Score =  117 bits (295), Expect = 1e-30
 Identities = 32/146 (21%), Positives = 67/146 (45%), Gaps = 1/146 (0%)

Query: 33  YIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLS 92
            I    Q  A+   +T  E++ F  +++  P   ++  V  +     +    +R    LS
Sbjct: 79  NISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLS 138

Query: 93  GGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNME 151
           GG +++++ A A++  P ++ +DEP S +D   R  +   I++   +     I  +H+  
Sbjct: 139 GGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV 198

Query: 152 ECEALCTKLTIMVNGQFTCLGSATHL 177
           E   +  ++ +M  GQ   +GS T +
Sbjct: 199 EAMTMGDRIAVMNRGQLLQIGSPTEV 224

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

 Score =  164 bits (416), Expect = 1e-47
 Identities = 58/227 (25%), Positives = 93/227 (40%), Gaps = 6/227 (2%)

Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
           VL V+ L   Y    G   A+  I   V RG+   L+G NGAGKTTT   + G ++   G
Sbjct: 6   VLEVQSLHVYY----GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKG 61

Query: 402 NAYVMNHSIRDSMDLVRSYIGY--CPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVN 459
                   I +    V + +G    P+   +   LT  E+L   +  R     +   +  
Sbjct: 62  KIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEW 121

Query: 460 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTC 519
                  L     +   TLSGG ++ L+   AL+  P L+ +DEP+ G+ P     ++  
Sbjct: 122 IFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEV 181

Query: 520 IERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
           I++   EG  ++L   N      +     ++  GQ    G A+ L  
Sbjct: 182 IQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

 Score =  105 bits (263), Expect = 3e-26
 Identities = 35/156 (22%), Positives = 60/156 (38%)

Query: 24  NPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHY 83
            P    N   I   P+   +   LT  E+L   +  R     +   +         L   
Sbjct: 73  KPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKER 132

Query: 84  SDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCV 143
             +   TLSGG ++ L+   AL+  P L+ +DEP+ G+ P     ++  I++   EG  +
Sbjct: 133 LKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTI 192

Query: 144 ILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 179
           +L   N      +     ++  GQ    G A+ L  
Sbjct: 193 LLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  163 bits (415), Expect = 2e-47
 Identities = 54/236 (22%), Positives = 96/236 (40%), Gaps = 19/236 (8%)

Query: 341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS 400
           ++L  + + K +    G   A++ +S  V +G+   ++G NG+GK+T   ++TG +K   
Sbjct: 3   EILRTENIVKYF----GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADE 58

Query: 401 GNAYVMNHSIRDSM--DLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVL----- 453
           G  Y  N  I +    +L    I    Q       +T  E+L           +      
Sbjct: 59  GRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYK 118

Query: 454 --------LNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPT 505
                   +     + L    L H  DR+   LSGG  + +    AL+ NP +I +DEP 
Sbjct: 119 KWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPI 178

Query: 506 SGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSA 561
           +G+ PG    ++  +    ++G   ++  H ++        L +M NGQ    G  
Sbjct: 179 AGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRG 234

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 99.3 bits (247), Expect = 5e-24
 Identities = 29/115 (25%), Positives = 50/115 (43%)

Query: 71  VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW 130
             + L    L H  DR+   LSGG  + +    AL+ NP +I +DEP +G+ PG    ++
Sbjct: 131 AFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIF 190

Query: 131 TCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKSMALP 185
             +    ++G   ++  H ++        L +M NGQ    G         ++ P
Sbjct: 191 NHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKNVLSDP 245

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

 Score =  161 bits (409), Expect = 1e-46
 Identities = 56/227 (24%), Positives = 103/227 (45%), Gaps = 5/227 (2%)

Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
           + +  + K++     T  A+N +S  V  G+ +G++G +GAGK+T  + +    +PT G+
Sbjct: 2   IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61

Query: 403 AYVMNHSI----RDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIV 458
             V    +       +   R  IG   Q   L    T   ++     + N P   +   V
Sbjct: 62  VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121

Query: 459 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT 518
            E L+   LG   D     LSGG K++++ A AL  NP ++  DE TS +DP   R +  
Sbjct: 122 TELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILE 181

Query: 519 CIERAV-SEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
            ++      G  ++L +H M+  + +C  + ++ NG+     + + +
Sbjct: 182 LLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 228

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

 Score =  102 bits (256), Expect = 2e-25
 Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 1/145 (0%)

Query: 34  IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSG 93
           IG   Q   L    T   ++     + N P   +   V E L+   LG   D     LSG
Sbjct: 84  IGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSG 143

Query: 94  GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAV-SEGRCVILTSHNMEE 152
           G K++++ A AL  NP ++  DE TS +DP   R +   ++      G  ++L +H M+ 
Sbjct: 144 GQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDV 203

Query: 153 CEALCTKLTIMVNGQFTCLGSATHL 177
            + +C  + ++ NG+     + + +
Sbjct: 204 VKRICDCVAVISNGELIEQDTVSEV 228

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

 Score =  154 bits (391), Expect = 7e-44
 Identities = 50/238 (21%), Positives = 98/238 (41%), Gaps = 20/238 (8%)

Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
           L V  L K Y    G    +  +S     G+   ++G +G+GK+T  + +    KP+ G 
Sbjct: 3   LHVIDLHKRY----GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGA 58

Query: 403 AYVMNHSI--------------RDSMDLVRSYIGYCPQFDALNDRLTPREH-LEFYSRVR 447
             V   +I              ++ + L+R+ +    Q   L   +T  E+ +E   +V 
Sbjct: 59  IIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL 118

Query: 448 NVPSVLLNTIVNESLNKFALGH-YSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTS 506
            +          + L K  +      +    LSGG ++++S A AL   P ++  DEPTS
Sbjct: 119 GLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTS 178

Query: 507 GMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
            +DP     +   +++   EG+ +++ +H M     + + +  +  G+    G    +
Sbjct: 179 ALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQV 236

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

 Score = 99.5 bits (248), Expect = 5e-24
 Identities = 30/146 (20%), Positives = 61/146 (41%), Gaps = 2/146 (1%)

Query: 34  IGYCPQFDALNDRLTPREH-LEFYSRVRNVPSVLLNTIVNESLNKFALGH-YSDREVRTL 91
           +    Q   L   +T  E+ +E   +V  +          + L K  +      +    L
Sbjct: 91  LTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHL 150

Query: 92  SGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 151
           SGG ++++S A AL   P ++  DEPTS +DP     +   +++   EG+ +++ +H M 
Sbjct: 151 SGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG 210

Query: 152 ECEALCTKLTIMVNGQFTCLGSATHL 177
               + + +  +  G+    G    +
Sbjct: 211 FARHVSSHVIFLHQGKIEEEGDPEQV 236

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

 Score =  149 bits (377), Expect = 4e-42
 Identities = 56/229 (24%), Positives = 103/229 (44%), Gaps = 10/229 (4%)

Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
            + +  ++K++    G   AV ++S  V  GE   LLG +G GKTTT +M+ G  +P+ G
Sbjct: 3   GVRLVDVWKVF----GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRG 58

Query: 402 NAYVMNHSI-----RDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNT 456
             Y+ +  +        +      I    Q  AL   +T  +++ F  ++R VP   ++ 
Sbjct: 59  QIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQ 118

Query: 457 IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFL 516
            V E      L    +R+ R LSGG +++++   A++  P +  +DEP S +D   R  +
Sbjct: 119 RVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRM 178

Query: 517 WT-CIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
                +     G   I  +H+  E   +  ++ +M  G    +GS   +
Sbjct: 179 RAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

 Score =  100 bits (251), Expect = 1e-24
 Identities = 37/178 (20%), Positives = 71/178 (39%), Gaps = 1/178 (0%)

Query: 1   MGLTTTPKRVVTLLLTTQKVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVR 60
            GL    +  + +       P     +      I    Q  AL   +T  +++ F  ++R
Sbjct: 50  AGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR 109

Query: 61  NVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSG 120
            VP   ++  V E      L    +R+ R LSGG +++++   A++  P +  +DEP S 
Sbjct: 110 KVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSN 169

Query: 121 MDPGARRFLWT-CIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 177
           +D   R  +     +     G   I  +H+  E   +  ++ +M  G    +GS   +
Sbjct: 170 LDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score =  148 bits (376), Expect = 4e-42
 Identities = 55/221 (24%), Positives = 98/221 (44%), Gaps = 6/221 (2%)

Query: 345 VKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 404
           ++ + K +    G       I+  +  GE    +G +G GK+T  +M+ G    TSG+ +
Sbjct: 3   LQNVTKAW----GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 58

Query: 405 VMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNK 464
           +    + D        +G   Q  AL   L+  E++ F  ++      ++N  VN+    
Sbjct: 59  IGEKRMND-TPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEV 117

Query: 465 FALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER-A 523
             L H  DR+ + LSGG +++++    L+  P +  LDEP S +D   R  +   I R  
Sbjct: 118 LQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLH 177

Query: 524 VSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
              GR +I  +H+  E   L  K+ ++  G+   +G    L
Sbjct: 178 KRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 218

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 94.2 bits (234), Expect = 2e-22
 Identities = 39/146 (26%), Positives = 67/146 (45%), Gaps = 1/146 (0%)

Query: 33  YIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLS 92
            +G   Q  AL   L+  E++ F  ++      ++N  VN+      L H  DR+ + LS
Sbjct: 73  GVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALS 132

Query: 93  GGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER-AVSEGRCVILTSHNME 151
           GG +++++    L+  P +  LDEP S +D   R  +   I R     GR +I  +H+  
Sbjct: 133 GGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV 192

Query: 152 ECEALCTKLTIMVNGQFTCLGSATHL 177
           E   L  K+ ++  G+   +G    L
Sbjct: 193 EAMTLADKIVVLDAGRVAQVGKPLEL 218

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  143 bits (363), Expect = 3e-40
 Identities = 47/222 (21%), Positives = 100/222 (45%), Gaps = 11/222 (4%)

Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
           + +K + K Y   +    A+  ++  +  GE   ++G +G+GK+T   ++    KPT G 
Sbjct: 2   IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61

Query: 403 AYVMNHSI-----RDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTI 457
            Y+ N         +   + R  IG+  Q   L   LT  E++E     +   ++     
Sbjct: 62  VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121

Query: 458 VNESLNKFAL----GHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR 513
              +L    +      +++ +   LSGG +++++ A AL  NPP+I  D+PT  +D    
Sbjct: 122 RKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTG 181

Query: 514 RFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQ 554
             +   +++   E G+ V++ +H++        ++  + +G+
Sbjct: 182 EKIMQLLKKLNEEDGKTVVVVTHDINVAR-FGERIIYLKDGE 222

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 87.6 bits (217), Expect = 3e-20
 Identities = 29/139 (20%), Positives = 64/139 (46%), Gaps = 6/139 (4%)

Query: 34  IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFAL----GHYSDREVR 89
           IG+  Q   L   LT  E++E     +   ++        +L    +      +++ +  
Sbjct: 85  IGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPN 144

Query: 90  TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSH 148
            LSGG +++++ A AL  NPP+I  D+PT  +D      +   +++   E G+ V++ +H
Sbjct: 145 QLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTH 204

Query: 149 NMEECEALCTKLTIMVNGQ 167
           ++        ++  + +G+
Sbjct: 205 DINVAR-FGERIIYLKDGE 222

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score =  142 bits (360), Expect = 1e-39
 Identities = 59/227 (25%), Positives = 107/227 (47%), Gaps = 7/227 (3%)

Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
           ++VK + K++   KG   A++ ++  +  GE FG+LG +GAGKTT  +++ G   P++G 
Sbjct: 4   IIVKNVSKVF--KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61

Query: 403 AYVMNHSI----RDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIV 458
            Y  +  +    +  +      IG   Q  AL   LT  E++ F      +    +   V
Sbjct: 62  LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV 121

Query: 459 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT 518
            E      + H  +   R LSG  +++++ A AL+ +P L+ LDEP S +D   R     
Sbjct: 122 EEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARA 181

Query: 519 -CIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
              E     G  +++ SH+  +  A+  ++ ++V G+   +G    L
Sbjct: 182 LVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 83.6 bits (206), Expect = 8e-19
 Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 1/145 (0%)

Query: 34  IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSG 93
           IG   Q  AL   LT  E++ F      +    +   V E      + H  +   R LSG
Sbjct: 84  IGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSG 143

Query: 94  GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT-CIERAVSEGRCVILTSHNMEE 152
             +++++ A AL+ +P L+ LDEP S +D   R        E     G  +++ SH+  +
Sbjct: 144 AQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPAD 203

Query: 153 CEALCTKLTIMVNGQFTCLGSATHL 177
             A+  ++ ++V G+   +G    L
Sbjct: 204 IFAIADRVGVLVKGKLVQVGKPEDL 228

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

 Score =  135 bits (341), Expect = 1e-37
 Identities = 42/199 (21%), Positives = 82/199 (41%), Gaps = 13/199 (6%)

Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
           L ++ L   Y      KP + +I+  + +G      G NG GKTT  K ++  +KP  G 
Sbjct: 3   LEIRDLSVGY-----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGE 57

Query: 403 AYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL 462
                  I      V+  I + P+   +  +++  ++L+  + +  V        + ++L
Sbjct: 58  IIYNGVPITK----VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVN--KNEIMDAL 111

Query: 463 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER 522
               +     + +  LS G  R++  A  LL N  +  LD+P   +D  ++  +   I  
Sbjct: 112 ESVEVLDLKKK-LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILE 170

Query: 523 AVSE-GRCVILTSHNMEEC 540
            + E G  +I +   +  C
Sbjct: 171 ILKEKGIVIISSREELSYC 189

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 79.6 bits (196), Expect = 1e-17
 Identities = 22/121 (18%), Positives = 51/121 (42%), Gaps = 4/121 (3%)

Query: 34  IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSG 93
           I + P+   +  +++  ++L+  + +  V        + ++L    +     + +  LS 
Sbjct: 72  IFFLPEEIIVPRKISVEDYLKAVASLYGVKVN--KNEIMDALESVEVLDLKKK-LGELSQ 128

Query: 94  GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEE 152
           G  R++  A  LL N  +  LD+P   +D  ++  +   I   + E G  +I +   +  
Sbjct: 129 GTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSY 188

Query: 153 C 153
           C
Sbjct: 189 C 189

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

 Score =  135 bits (341), Expect = 3e-37
 Identities = 40/214 (18%), Positives = 77/214 (35%), Gaps = 14/214 (6%)

Query: 359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLV 417
              +  +S  V  GE   L+G NGAGK+T    + G +    G+       +   S   +
Sbjct: 12  STRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGKGSIQFAGQPLEAWSATKL 70

Query: 418 RSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRT 477
             +  Y  Q            +L  +   +         ++N+     AL     R    
Sbjct: 71  ALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTE-----LLNDVAGALALDDKLGRSTNQ 125

Query: 478 LSGGNKRKLSTAIALL-------GNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCV 530
           LSGG  +++  A  +L           L+ LDEP + +D   +  L   +     +G  +
Sbjct: 126 LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAI 185

Query: 531 ILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
           +++SH++        +  ++  G+    G    +
Sbjct: 186 VMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEV 219

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

 Score = 82.7 bits (204), Expect = 2e-18
 Identities = 30/188 (15%), Positives = 63/188 (33%), Gaps = 17/188 (9%)

Query: 2   GLTTTPKRVVTLLLTTQKV-----PGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFY 56
           G +T   R+  +      +     P    +  K   +  Y  Q            +L  +
Sbjct: 37  GKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLH 96

Query: 57  SRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALL-------GNP 109
              +         ++N+     AL     R    LSGG  +++  A  +L          
Sbjct: 97  QHDKTRTE-----LLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAG 151

Query: 110 PLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFT 169
            L+ LDEP + +D   +  L   +     +G  ++++SH++        +  ++  G+  
Sbjct: 152 QLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKML 211

Query: 170 CLGSATHL 177
             G    +
Sbjct: 212 ASGRREEV 219

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

 Score =  129 bits (324), Expect = 7e-35
 Identities = 52/224 (23%), Positives = 104/224 (46%), Gaps = 10/224 (4%)

Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
           ++ ++ L + + N      +++ +S  V  GE F +LG  GAGKT   +++ G   P SG
Sbjct: 1   MIEIESLSRKWKN-----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSG 55

Query: 402 NAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNES 461
              +    + D     +  I +  Q  +L   +  +++LEF  R++ +        V ++
Sbjct: 56  RILLDGKDVTDLSP-EKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKD---PKRVLDT 111

Query: 462 LNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT-CI 520
                + H  DR   TLSGG +++++ A AL+ NP ++ LDEP S +DP  +        
Sbjct: 112 ARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLS 171

Query: 521 ERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
                    V+  +H+  E   +  ++ ++++G+   +G    +
Sbjct: 172 VLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEI 215

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

 Score = 75.1 bits (184), Expect = 5e-16
 Identities = 34/149 (22%), Positives = 69/149 (46%), Gaps = 4/149 (2%)

Query: 33  YIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLS 92
            I +  Q  +L   +  +++LEF  R++ +        V ++     + H  DR   TLS
Sbjct: 73  DIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKD---PKRVLDTARDLKIEHLLDRNPLTLS 129

Query: 93  GGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT-CIERAVSEGRCVILTSHNME 151
           GG +++++ A AL+ NP ++ LDEP S +DP  +                 V+  +H+  
Sbjct: 130 GGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT 189

Query: 152 ECEALCTKLTIMVNGQFTCLGSATHLKSK 180
           E   +  ++ ++++G+   +G    +  K
Sbjct: 190 EARIMADRIAVVMDGKLIQVGKPEEIFEK 218

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  126 bits (317), Expect = 3e-33
 Identities = 40/216 (18%), Positives = 78/216 (36%), Gaps = 18/216 (8%)

Query: 355 SKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM 414
                P +  I+  + +GE   + G  G+GKT+   ++ G ++ + G             
Sbjct: 45  CLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGR------ 98

Query: 415 DLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDRE 474
                 + +C QF  +    T +E++ F           +        +        +  
Sbjct: 99  ------VSFCSQFSWIMPG-TIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTV 151

Query: 475 V----RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCV 530
           +     TLSGG + ++S A A+  +  L  LD P   +D      ++      +   +  
Sbjct: 152 LGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTR 211

Query: 531 ILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
           IL +  ME       K+ I+  G     G+ + L+S
Sbjct: 212 ILVTSKMEHLR-KADKILILHQGSSYFYGTFSELQS 246

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 83.0 bits (205), Expect = 3e-18
 Identities = 29/152 (19%), Positives = 55/152 (36%), Gaps = 6/152 (3%)

Query: 34  IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREV----R 89
           + +C QF  +    T +E++ F           +        +        +  +     
Sbjct: 99  VSFCSQFSWIMPG-TIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGV 157

Query: 90  TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN 149
           TLSGG + ++S A A+  +  L  LD P   +D      ++      +   +  IL +  
Sbjct: 158 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSK 217

Query: 150 MEECEALCTKLTIMVNGQFTCLGSATHLKSKS 181
           ME       K+ I+  G     G+ + L+S  
Sbjct: 218 MEHLR-KADKILILHQGSSYFYGTFSELQSLR 248

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

 Score =  119 bits (300), Expect = 3e-31
 Identities = 52/230 (22%), Positives = 93/230 (40%), Gaps = 13/230 (5%)

Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
           +L  + +   Y     ++  +  ISF           G +G GK+T F +L    +PT+G
Sbjct: 1   MLSARHVDFAY---DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAG 57

Query: 402 NAYVMNHSIRD-SMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNE 460
              +    I + S++  RS IG+  Q  A+    T RE+L +          L   +   
Sbjct: 58  EITIDGQPIDNISLENWRSQIGFVSQDSAIMAG-TIRENLTYGLEGDYTDEDLWQVLDLA 116

Query: 461 SLNKFALG------HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARR 514
               F                  +SGG +++L+ A A L NP ++ LDE T+ +D  +  
Sbjct: 117 FARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESES 176

Query: 515 FLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
            +   ++  + +GR  ++ +H +        K+  +  GQ T  G    L
Sbjct: 177 MVQKALDS-LMKGRTTLVIAHRLSTIV-DADKIYFIEKGQITGSGKHNEL 224

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

 Score = 66.4 bits (162), Expect = 7e-13
 Identities = 35/165 (21%), Positives = 65/165 (39%), Gaps = 9/165 (5%)

Query: 23  SNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALG- 81
            N +++   S IG+  Q  A+    T RE+L +          L   +       F    
Sbjct: 67  DNISLENWRSQIGFVSQDSAIMAG-TIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENM 125

Query: 82  -----HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERA 136
                         +SGG +++L+ A A L NP ++ LDE T+ +D  +   +   ++  
Sbjct: 126 PDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDS- 184

Query: 137 VSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKS 181
           + +GR  ++ +H +        K+  +  GQ T  G    L +  
Sbjct: 185 LMKGRTTLVIAHRLSTIV-DADKIYFIEKGQITGSGKHNELVATH 228

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score =  117 bits (294), Expect = 2e-30
 Identities = 56/201 (27%), Positives = 94/201 (46%), Gaps = 5/201 (2%)

Query: 365 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYC 424
           + F +G  +   LLG  GAGK+   +++ G +KP  G   +    I   +   R  IG+ 
Sbjct: 18  VDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITP-LPPERRGIGFV 75

Query: 425 PQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKR 484
           PQ  AL   L+   ++ +   +RNV  V  +  V E   K  + H  DR+   LSGG ++
Sbjct: 76  PQDYALFPHLSVYRNIAYG--LRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQ 133

Query: 485 KLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT-CIERAVSEGRCVILTSHNMEECEAL 543
           +++ A AL+  P L+ LDEP S +D   +  L              ++  +H++ E   L
Sbjct: 134 RVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAML 193

Query: 544 CTKLTIMVNGQFTCLGSATHL 564
             ++ +M+NG+    G    L
Sbjct: 194 ADEVAVMLNGRIVEKGKLKEL 214

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 72.4 bits (177), Expect = 7e-15
 Identities = 41/145 (28%), Positives = 69/145 (47%), Gaps = 3/145 (2%)

Query: 34  IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSG 93
           IG+ PQ  AL   L+   ++ +   +RNV  V  +  V E   K  + H  DR+   LSG
Sbjct: 72  IGFVPQDYALFPHLSVYRNIAYG--LRNVERVERDRRVREMAEKLGIAHLLDRKPARLSG 129

Query: 94  GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT-CIERAVSEGRCVILTSHNMEE 152
           G +++++ A AL+  P L+ LDEP S +D   +  L              ++  +H++ E
Sbjct: 130 GERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIE 189

Query: 153 CEALCTKLTIMVNGQFTCLGSATHL 177
              L  ++ +M+NG+    G    L
Sbjct: 190 AAMLADEVAVMLNGRIVEKGKLKEL 214

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score =  115 bits (290), Expect = 8e-30
 Identities = 47/247 (19%), Positives = 103/247 (41%), Gaps = 16/247 (6%)

Query: 324 DDVRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGA 383
           D+ ++  +R       GD+   + +   Y   +   PA+  I+  +  G+   L+G +G+
Sbjct: 1   DEGKRVIDRAT-----GDL-EFRNVTFTYPGRE--VPALRNINLKIPAGKTVALVGRSGS 52

Query: 384 GKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM-DLVRSYIGYCPQFDALNDRLTPREHLEF 442
           GK+T   ++T       G+  +  H +R+     +R+ +    Q   L +          
Sbjct: 53  GKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYA 112

Query: 443 YSRVRN---VPSVLLNTIVNESLNKFALG--HYSDREVRTLSGGNKRKLSTAIALLGNPP 497
            +   +   +          + +NK   G           LSGG +++++ A ALL + P
Sbjct: 113 RTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSP 172

Query: 498 LIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTC 557
           ++ LDE TS +D  + R +   ++    + R  ++ +H +   E    ++ ++ +G    
Sbjct: 173 ILILDEATSALDTESERAIQAALDEL-QKNRTSLVIAHRLSTIE-QADEIVVVEDGIIVE 230

Query: 558 LGSATHL 564
            G+ + L
Sbjct: 231 RGTHSEL 237

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score = 68.3 bits (167), Expect = 1e-13
 Identities = 23/102 (22%), Positives = 50/102 (49%), Gaps = 2/102 (1%)

Query: 80  LGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE 139
           L          LSGG +++++ A ALL + P++ LDE TS +D  + R +   ++    +
Sbjct: 142 LDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDEL-QK 200

Query: 140 GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKS 181
            R  ++ +H +   E    ++ ++ +G     G+ + L ++ 
Sbjct: 201 NRTSLVIAHRLSTIE-QADEIVVVEDGIIVERGTHSELLAQH 241

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

 Score =  115 bits (290), Expect = 8e-30
 Identities = 51/228 (22%), Positives = 97/228 (42%), Gaps = 11/228 (4%)

Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
           + +  +   Y +     P +  I+  + +GE    +G++G GK+T   ++      TSG 
Sbjct: 17  IDIDHVSFQYND--NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQ 74

Query: 403 AYVMNHSIRD-SMDLVRSYIGYCPQFDALNDRLTPREHLEF---YSRVRNVPSVLLNTIV 458
             +  H+I+D     +R+ IG   Q D +    T +E++      +    V         
Sbjct: 75  ILIDGHNIKDFLTGSLRNQIGLV-QQDNILFSDTVKENILLGRPTATDEEVVEAAKMANA 133

Query: 459 NESLNKFALG--HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFL 516
           ++ +     G           LSGG K++LS A   L NPP++ LDE TS +D  +   +
Sbjct: 134 HDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESII 193

Query: 517 WTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
              ++  +S+ R  ++ +H +        K+ ++ NG     G+   L
Sbjct: 194 QEALDV-LSKDRTTLIVAHRLSTI-THADKIVVIENGHIVETGTHREL 239

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

 Score = 66.0 bits (161), Expect = 9e-13
 Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 2/93 (2%)

Query: 89  RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 148
             LSGG K++LS A   L NPP++ LDE TS +D  +   +   ++  +S+ R  ++ +H
Sbjct: 153 VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDV-LSKDRTTLIVAH 211

Query: 149 NMEECEALCTKLTIMVNGQFTCLGSATHLKSKS 181
            +        K+ ++ NG     G+   L +K 
Sbjct: 212 RLSTI-THADKIVVIENGHIVETGTHRELIAKQ 243

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

 Score =  110 bits (276), Expect = 5e-28
 Identities = 43/216 (19%), Positives = 98/216 (45%), Gaps = 9/216 (4%)

Query: 355 SKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-S 413
              +   ++ I+  + +GE  G++G +G+GK+T  K++     P +G   +  H +    
Sbjct: 12  KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALAD 71

Query: 414 MDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFAL-----G 468
            + +R  +G   Q + L +R +  +++   +   +V  V+    +  + +  +       
Sbjct: 72  PNWLRRQVGVVLQDNVLLNR-SIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYN 130

Query: 469 HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGR 528
                +   LSGG +++++ A AL+ NP ++  DE TS +D  +   +   +   + +GR
Sbjct: 131 TIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM-HKICKGR 189

Query: 529 CVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
            VI+ +H +   +    ++ +M  G+    G    L
Sbjct: 190 TVIIIAHRLSTVK-NADRIIVMEKGKIVEQGKHKEL 224

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

 Score = 67.2 bits (164), Expect = 3e-13
 Identities = 29/160 (18%), Positives = 68/160 (42%), Gaps = 8/160 (5%)

Query: 23  SNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFAL-- 80
           +    +     +G   Q + L +R +  +++   +   +V  V+    +  + +  +   
Sbjct: 68  ALADPNWLRRQVGVVLQDNVLLNR-SIIDNISLANPGMSVEKVIYAAKLAGAHDFISELR 126

Query: 81  ---GHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAV 137
                    +   LSGG +++++ A AL+ NP ++  DE TS +D  +   +   +   +
Sbjct: 127 EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM-HKI 185

Query: 138 SEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 177
            +GR VI+ +H +   +    ++ +M  G+    G    L
Sbjct: 186 CKGRTVIIIAHRLSTVK-NADRIIVMEKGKIVEQGKHKEL 224

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (264), Expect = 2e-26
 Identities = 41/218 (18%), Positives = 86/218 (39%), Gaps = 10/218 (4%)

Query: 355 SKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-S 413
           ++     +  ++F +  GE   L+G NG+GK+T   +L    +PT G   +    +    
Sbjct: 23  NRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYE 82

Query: 414 MDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALG----- 468
              +   +    Q   +  R + +E++ +    +     +    V    + F  G     
Sbjct: 83  HRYLHRQVAAVGQEPQVFGR-SLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGY 141

Query: 469 -HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE- 526
               D     LSGG ++ ++ A AL+  P ++ LD+ TS +D  ++  +   +  +    
Sbjct: 142 DTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERY 201

Query: 527 GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
            R V+L + ++   E     +  +  G     G+   L
Sbjct: 202 SRSVLLITQHLSLVE-QADHILFLEGGAIREGGTHQQL 238

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.9 bits (145), Expect = 1e-10
 Identities = 28/157 (17%), Positives = 59/157 (37%), Gaps = 9/157 (5%)

Query: 32  SYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALG------HYSD 85
             +    Q   +  R + +E++ +    +     +    V    + F  G         D
Sbjct: 88  RQVAAVGQEPQVFGR-SLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVD 146

Query: 86  REVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVI 144
                LSGG ++ ++ A AL+  P ++ LD+ TS +D  ++  +   +  +     R V+
Sbjct: 147 EAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVL 206

Query: 145 LTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKS 181
           L + ++   E     +  +  G     G+   L  K 
Sbjct: 207 LITQHLSLVE-QADHILFLEGGAIREGGTHQQLMEKK 242

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

 Score = 69.2 bits (168), Expect = 2e-14
 Identities = 18/188 (9%), Positives = 45/188 (23%), Gaps = 26/188 (13%)

Query: 376 GLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLT 435
            + G  G GKTT  K +   +   +   +       ++                      
Sbjct: 4   IITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETK--------------------- 42

Query: 436 PREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGN 495
            +              +  +          + G   + +          + +   A    
Sbjct: 43  -KRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGV--NVQYFEELAIPILERAYREAKKDR 99

Query: 496 PPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQF 555
             +I +DE    M+  +++F     +        V+ T    +    L  ++  +     
Sbjct: 100 RKVIIIDEIGK-MELFSKKFRDLVRQIMHDPNVNVVATIPIRDV-HPLVKEIRRLPGAVL 157

Query: 556 TCLGSATH 563
             L     
Sbjct: 158 IELTPENR 165

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.7 bits (91), Expect = 8e-04
 Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 3/61 (4%)

Query: 99  LSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN---MEECEA 155
           L  AI      P   LDE  + +D    + +   I R  +     I+ S      E+ +A
Sbjct: 345 LLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDA 404

Query: 156 L 156
           L
Sbjct: 405 L 405

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.7 bits (91), Expect = 8e-04
 Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 3/61 (4%)

Query: 486 LSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN---MEECEA 542
           L  AI      P   LDE  + +D    + +   I R  +     I+ S      E+ +A
Sbjct: 345 LLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDA 404

Query: 543 L 543
           L
Sbjct: 405 L 405

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	566
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	100.0
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	100.0
d1g2912	240	Maltose transport protein MalK, N-terminal domain	100.0
d2awna2	232	Maltose transport protein MalK, N-terminal domain	100.0
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	100.0
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	100.0
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	100.0
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	100.0
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	100.0
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	100.0
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	100.0
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	100.0
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	100.0
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	100.0
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	100.0
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	100.0
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	100.0
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	100.0
d1g2912	240	Maltose transport protein MalK, N-terminal domain	100.0
d2awna2	232	Maltose transport protein MalK, N-terminal domain	100.0
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	100.0
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	100.0
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	100.0
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	100.0
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	100.0
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	100.0
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	100.0
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	100.0
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	100.0
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	100.0
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	100.0
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	100.0
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	99.97
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	99.95
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.85
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	99.68
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.65
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.6
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.28
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	99.2
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	98.88
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	98.85
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.79
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	98.78
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	98.33
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	98.24
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	98.22
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	97.52
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	97.46
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	97.35
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	97.21
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	97.09
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.03
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.0
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	96.93
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	96.92
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	96.82
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	96.79
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	96.67
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	96.65
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	96.57
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	96.47
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	96.44
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	96.35
d1j8yf2	211	GTPase domain of the signal sequence recognition p	96.34
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	96.26
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	96.26
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	96.25
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	96.24
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	96.23
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	96.15
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	96.13
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	96.07
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.05
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	95.99
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	95.97
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	95.95
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	95.9
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	95.83
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	95.81
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	95.77
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	95.74
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.69
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	95.65
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	95.59
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	95.58
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	95.54
d2qy9a2	211	GTPase domain of the signal recognition particle r	95.53
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	95.52
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	95.52
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	95.51
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	95.5
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	95.47
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	95.46
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	95.45
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	95.45
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.31
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	95.3
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.28
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	95.23
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	95.22
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.2
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	95.2
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	95.2
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	95.18
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	95.17
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.15
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	95.13
d1nrjb_	209	Signal recognition particle receptor beta-subunit	95.13
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	95.02
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	94.98
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	94.93
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	94.93
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	94.91
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	94.88
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	94.86
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	94.84
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	94.82
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	94.81
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	94.69
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	94.66
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	94.65
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	94.62
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	94.61
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	94.59
d1okkd2	207	GTPase domain of the signal recognition particle r	94.55
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	94.5
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	94.46
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	94.45
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	94.42
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	94.4
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	94.35
d2fh5b1	207	Signal recognition particle receptor beta-subunit	94.25
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	94.21
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	94.2
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	94.18
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	94.17
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	94.14
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	94.1
d1vmaa2	213	GTPase domain of the signal recognition particle r	94.05
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	94.04
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	94.04
d1ls1a2	207	GTPase domain of the signal sequence recognition p	93.92
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	93.84
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	93.81
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	93.8
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	93.76
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	93.74
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	93.69
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	93.67
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	93.65
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	93.52
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	93.47
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	93.45
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	93.42
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	93.42
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	93.37
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	93.35
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	93.35
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	93.31
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	93.08
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	93.0
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	92.98
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	92.97
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	92.97
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	92.86
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	92.83
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	92.8
d1xpua3	289	Transcription termination factor Rho, ATPase domai	92.77
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	92.75
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	92.68
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	92.67
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	92.66
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	92.57
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	92.55
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	92.4
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	92.4
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	92.37
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	92.33
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	92.32
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	92.31
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	92.31
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	92.23
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	92.14
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	92.13
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	92.03
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	92.02
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	92.01
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	92.0
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	91.96
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	91.94
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	91.91
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	91.87
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	91.83
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	91.67
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	91.65
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	91.65
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	91.59
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	91.56
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	91.51
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	91.42
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	91.35
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	91.34
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	91.31
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	91.29
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	91.07
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	91.05
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	90.94
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	90.85
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	90.83
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	90.77
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	90.76
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	90.75
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	90.67
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	90.65
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	90.6
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	90.54
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	90.42
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	90.4
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	90.37
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	90.25
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	90.18
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	90.15
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	90.12
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	90.05
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	90.0
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	89.96
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	89.92
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	89.48
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	89.42
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	88.99
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	88.72
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	88.6
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	88.6
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	88.37
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	88.28
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	88.24
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	88.09
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	88.02
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	87.84
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	87.61
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	87.59
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	87.53
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	87.09
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	86.86
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	86.42
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	86.09
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	85.7
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	85.69
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	84.74
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	84.56
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	84.38
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	84.31
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	83.79
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	83.38
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	83.06
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	82.5
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	82.37
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	82.12
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	81.67
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	81.65
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	81.57
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	81.06
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	80.27

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=3.7e-61  Score=466.51  Aligned_cols=218  Identities=25%  Similarity=0.388  Sum_probs=198.8

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCce
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYI  421 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i  421 (566)
                      .|+++||+|+|+    +..+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..... .+++|
T Consensus         6 ~I~v~nlsk~yg----~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~-~~r~i   80 (239)
T d1v43a3           6 EVKLENLTKRFG----NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPP-KDRNI   80 (239)
T ss_dssp             CEEEEEEEEEET----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG-GGGTE
T ss_pred             eEEEEEEEEEEC----CEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCc-ccceE
Confidence            389999999997    6789999999999999999999999999999999999999999999999999976333 34679


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEE
Q psy7366         422 GYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFL  501 (566)
Q Consensus       422 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllL  501 (566)
                      |||||++.+|+.+||+||+.++...++.++.+.++++.++++.++|.+..++++.+|||||||||+|||||+.+|++|||
T Consensus        81 g~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLll  160 (239)
T d1v43a3          81 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLM  160 (239)
T ss_dssp             EEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEE
T ss_pred             EEEeechhhcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhccCCCceee
Confidence            99999999999999999999988878888888889999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         502 DEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       502 DEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      ||||+||||.++..++++|++++++ |+|||+||||++++.++|||+++|++|+|+++|+++++
T Consensus       161 DEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el  224 (239)
T d1v43a3         161 DEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEV  224 (239)
T ss_dssp             ESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred             cCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence            9999999999999999999999766 99999999999999999999999999999999999886

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=7e-61  Score=465.39  Aligned_cols=224  Identities=25%  Similarity=0.407  Sum_probs=208.2

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc----hHHh
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS----MDLV  417 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~----~~~~  417 (566)
                      +|+++||+|.|+.+.+...||+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++...    ...+
T Consensus         1 mi~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~   80 (240)
T d3dhwc1           1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA   80 (240)
T ss_dssp             CEEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHH
T ss_pred             CEEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhh
Confidence            589999999997533334689999999999999999999999999999999999999999999999998642    2235


Q ss_pred             cCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCC
Q psy7366         418 RSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPP  497 (566)
Q Consensus       418 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~  497 (566)
                      |++||||||++.+++.+||+||+.++....+.++.+.++++.++++.+||.+..++++.+|||||||||+|||||+.+|+
T Consensus        81 rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL~~~P~  160 (240)
T d3dhwc1          81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPK  160 (240)
T ss_dssp             HHHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHHHTCCS
T ss_pred             hccccccccccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHhhhhccCCC
Confidence            57899999999999999999999999888888888888899999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         498 LIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       498 lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      +|||||||+|||+.++..++++|++++++ |.|||+||||++++..+|||+++|++|+|+++|+++++.
T Consensus       161 lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~  229 (240)
T d3dhwc1         161 VLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVF  229 (240)
T ss_dssp             EEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTT
T ss_pred             eEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            99999999999999999999999999876 999999999999999999999999999999999999874

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=100.00  E-value=1.1e-60  Score=463.94  Aligned_cols=219  Identities=26%  Similarity=0.431  Sum_probs=206.7

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCch-----HH
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM-----DL  416 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~-----~~  416 (566)
                      .|+++||+|.|+    +..+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++....     ..
T Consensus         3 ~i~v~nl~k~yg----~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~   78 (240)
T d1g2912           3 GVRLVDVWKVFG----EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP   78 (240)
T ss_dssp             EEEEEEEEEEET----TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG
T ss_pred             cEEEEeEEEEEC----CEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhccc
Confidence            489999999997    678999999999999999999999999999999999999999999999999885422     22


Q ss_pred             hcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCC
Q psy7366         417 VRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNP  496 (566)
Q Consensus       417 ~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p  496 (566)
                      .+++||||||++.+|+.+||+||+.++...++.+..+.++++.++++.+++.+..+++|++|||||||||+|||||+.+|
T Consensus        79 ~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAraL~~~P  158 (240)
T d1g2912          79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKP  158 (240)
T ss_dssp             GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCC
T ss_pred             ccccceecccchhhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence            36789999999999999999999999998888888888889999999999999999999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         497 PLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       497 ~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      ++|||||||+|||+.++..++++|+++.++ |.|||+||||++++..+|||+++|++|+|++.|+++++
T Consensus       159 ~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el  227 (240)
T d1g2912         159 QVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV  227 (240)
T ss_dssp             SEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred             CEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence            999999999999999999999999999776 99999999999999999999999999999999999886

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5.4e-61  Score=463.88  Aligned_cols=217  Identities=25%  Similarity=0.423  Sum_probs=164.6

Q ss_pred             EEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceE
Q psy7366         343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIG  422 (566)
Q Consensus       343 l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~  422 (566)
                      |+++||+|+|+    +..+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++..... .+++||
T Consensus         1 Iev~nv~k~yg----~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~-~~r~ig   75 (232)
T d2awna2           1 VQLQNVTKAWG----EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPP-AERGVG   75 (232)
T ss_dssp             EEEEEEEEEET----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCG-GGTCEE
T ss_pred             CEEEEEEEEEC----CEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCch-hhceee
Confidence            68999999997    6789999999999999999999999999999999999999999999999999865332 356799


Q ss_pred             EEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEe
Q psy7366         423 YCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLD  502 (566)
Q Consensus       423 ~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLD  502 (566)
                      ||||++.+|+.+||+||+.++....+.++.+.++++.++++.+++.+..++++.+|||||||||+|||||+.+|++||||
T Consensus        76 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~illlD  155 (232)
T d2awna2          76 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLD  155 (232)
T ss_dssp             EECSSCCC---------------------CHHHHHHHHHHHHC---------------------CHHHHHHTCCSEEEEE
T ss_pred             eeccccccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            99999999999999999999888777777778889999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         503 EPTSGMDPGARRFLWTCIERAVS-EGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       503 EPt~gLD~~~~~~l~~~l~~~~~-~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      |||+||||.++..+++.|+++.+ .|+|||++|||++++..+|||+++|++|+|+++|+++++
T Consensus       156 EPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el  218 (232)
T d2awna2         156 EPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL  218 (232)
T ss_dssp             STTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEeCHHHH
Confidence            99999999999999999999865 599999999999999999999999999999999999886

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=7.5e-61  Score=464.66  Aligned_cols=221  Identities=26%  Similarity=0.432  Sum_probs=206.7

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc----hHHh
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS----MDLV  417 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~----~~~~  417 (566)
                      .|+++|++|+|++  +...+|+||||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++...    ....
T Consensus         3 ~i~v~nlsk~y~~--g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~   80 (242)
T d1oxxk2           3 RIIVKNVSKVFKK--GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE   80 (242)
T ss_dssp             CEEEEEEEEEEGG--GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGG
T ss_pred             EEEEEeEEEEECC--CCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchh
Confidence            4899999999963  356799999999999999999999999999999999999999999999999998542    2334


Q ss_pred             cCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCC
Q psy7366         418 RSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPP  497 (566)
Q Consensus       418 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~  497 (566)
                      +++||||||++.+|+.+||+||+.++...++.++.+.++++.++++.++|.+..+++|.+|||||||||+|||||+.+|+
T Consensus        81 rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~~P~  160 (242)
T d1oxxk2          81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPS  160 (242)
T ss_dssp             GSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred             hccceEEeccccccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHHHHhHHhhccc
Confidence            67899999999999999999999999888888888888999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         498 LIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       498 lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      +|||||||+|||+.++..++++|+++.++ |.|||+||||++++.++|||+++|++|+|+++|+++++
T Consensus       161 llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el  228 (242)
T d1oxxk2         161 LLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL  228 (242)
T ss_dssp             EEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred             ceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence            99999999999999999999999999766 99999999999999999999999999999999999886

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=100.00  E-value=6.7e-60  Score=454.84  Aligned_cols=215  Identities=24%  Similarity=0.422  Sum_probs=199.6

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCce
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYI  421 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i  421 (566)
                      +|+++||+|+|+    + .+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++...... +++|
T Consensus         1 mi~v~nlsk~y~----~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~-~r~i   74 (229)
T d3d31a2           1 MIEIESLSRKWK----N-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE-KHDI   74 (229)
T ss_dssp             CEEEEEEEEECS----S-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH-HHTC
T ss_pred             CEEEEEEEEEeC----C-EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchh-Hhcc
Confidence            589999999996    3 589999999999999999999999999999999999999999999999999763332 5679


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEE
Q psy7366         422 GYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFL  501 (566)
Q Consensus       422 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllL  501 (566)
                      |||||++.+|+.+||+||+.++...++.+.   .+++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||
T Consensus        75 g~v~Q~~~l~~~~tV~enl~~~~~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLll  151 (229)
T d3d31a2          75 AFVYQNYSLFPHMNVKKNLEFGMRMKKIKD---PKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLL  151 (229)
T ss_dssp             EEECTTCCCCTTSCHHHHHHHHHHHHCCCC---HHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEE
T ss_pred             eeeccccccCccccHHHHHHHHHhhccccH---HHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhccCCceee
Confidence            999999999999999999999887776654   34688999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         502 DEPTSGMDPGARRFLWTCIERAVS-EGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       502 DEPt~gLD~~~~~~l~~~l~~~~~-~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      ||||+||||.++..++++|+++.+ .|.|||++|||++++..+|||+++|++|+++++|+++++.
T Consensus       152 DEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~  216 (229)
T d3d31a2         152 DEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIF  216 (229)
T ss_dssp             ESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred             cCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            999999999999999999999865 4999999999999999999999999999999999999874

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=1.2e-58  Score=447.25  Aligned_cols=219  Identities=23%  Similarity=0.390  Sum_probs=195.5

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc-hH----H
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS-MD----L  416 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~----~  416 (566)
                      +|+++||+|.|+.+.....+|+||||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++... ..    .
T Consensus         1 mI~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~   80 (230)
T d1l2ta_           1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI   80 (230)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred             CEEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchh
Confidence            589999999997432234589999999999999999999999999999999999999999999999998652 22    2


Q ss_pred             hcCceEEEecCCCCCCCCCHHHHHHHHHHhc---CCCchHHHHHHHHHHHHcCCCC-ccccCcCcCChhHHHHHHHHHHH
Q psy7366         417 VRSYIGYCPQFDALNDRLTPREHLEFYSRVR---NVPSVLLNTIVNESLNKFALGH-YSDREVRTLSGGNKRKLSTAIAL  492 (566)
Q Consensus       417 ~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqrv~la~al  492 (566)
                      .+++||||||++.+++.+||+||+.++....   ..+..+..+++.++++.++|.+ ..+++|.+|||||||||+|||||
T Consensus        81 r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAraL  160 (230)
T d1l2ta_          81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARAL  160 (230)
T ss_dssp             HHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHH
T ss_pred             hcceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHhhh
Confidence            2467999999999999999999999887653   3345556678889999999975 67999999999999999999999


Q ss_pred             cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCc
Q psy7366         493 LGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSA  561 (566)
Q Consensus       493 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~  561 (566)
                      +.+|++|||||||++||+.++..++++|+++.++ |+|||+||||++++ ++|||+++|++|+|+++|++
T Consensus       161 ~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a-~~~drv~~m~~G~Iv~~g~~  229 (230)
T d1l2ta_         161 ANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVEREEKL  229 (230)
T ss_dssp             TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHH-TTSSEEEEEETTEEEEEEEC
T ss_pred             hcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHH-HhCCEEEEEECCEEEEeccC
Confidence            9999999999999999999999999999999776 99999999999987 69999999999999999875

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=2.5e-58  Score=449.44  Aligned_cols=220  Identities=36%  Similarity=0.510  Sum_probs=210.0

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCce
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYI  421 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i  421 (566)
                      +|+++||+|+|+    ++++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.......++.+
T Consensus         2 aI~v~nl~k~yg----~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i   77 (238)
T d1vpla_           2 AVVVKDLRKRIG----KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLI   77 (238)
T ss_dssp             CEEEEEEEEEET----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTE
T ss_pred             CEEEEeEEEEEC----CEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccChHHHHhhE
Confidence            489999999997    6789999999999999999999999999999999999999999999999999877666778899


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEE
Q psy7366         422 GYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFL  501 (566)
Q Consensus       422 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllL  501 (566)
                      ||+||++.+++++|+.||+.++..+++.+..+..+.++.+++.+++.+..++++.+|||||||||+|||||+.+|++|||
T Consensus        78 ~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p~illL  157 (238)
T d1vpla_          78 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAIL  157 (238)
T ss_dssp             EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred             eEeeeccccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhcCCCEEEe
Confidence            99999999999999999999988888887777788899999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         502 DEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       502 DEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      ||||+||||.++..++++|++++++|+|||++|||++++..+||||++|++|+|+++|++++++
T Consensus       158 DEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~  221 (238)
T d1vpla_         158 DEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELK  221 (238)
T ss_dssp             ESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHH
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            9999999999999999999999989999999999999999999999999999999999999874

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=8.2e-58  Score=450.67  Aligned_cols=219  Identities=22%  Similarity=0.327  Sum_probs=202.0

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc--------
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS--------  413 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~--------  413 (566)
                      .|+++||+|+|+    +..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++...        
T Consensus         2 ~Lev~nl~k~yg----~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~   77 (258)
T d1b0ua_           2 KLHVIDLHKRYG----GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLK   77 (258)
T ss_dssp             CEEEEEEEEEET----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEE
T ss_pred             eEEEEEEEEEEC----CEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhcc
Confidence            489999999997    67899999999999999999999999999999999999999999999999998521        


Q ss_pred             ------hHHhcCceEEEecCCCCCCCCCHHHHHHHHH-HhcCCCchHHHHHHHHHHHHcCCCC-ccccCcCcCChhHHHH
Q psy7366         414 ------MDLVRSYIGYCPQFDALNDRLTPREHLEFYS-RVRNVPSVLLNTIVNESLNKFALGH-YSDREVRTLSGGNKRK  485 (566)
Q Consensus       414 ------~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqr  485 (566)
                            ....+++||||||++.+++.+||.||+.++. ...+.+..+..+++.++++.+++.+ ..+++|.+||||||||
T Consensus        78 ~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QR  157 (258)
T d1b0ua_          78 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQR  157 (258)
T ss_dssp             ESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHH
T ss_pred             cccHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHHH
Confidence                  2345678999999999999999999998863 4456677777888999999999986 4578899999999999


Q ss_pred             HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         486 LSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       486 v~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      |+|||||+.+|++|||||||+|||+.++..++++|++++++|.|||+||||++++..+||||++|++|+|+++|+++++
T Consensus       158 v~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv~~g~~~ev  236 (258)
T d1b0ua_         158 VSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQV  236 (258)
T ss_dssp             HHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred             HHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence            9999999999999999999999999999999999999998999999999999999999999999999999999999886

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=100.00  E-value=1.9e-57  Score=444.18  Aligned_cols=220  Identities=26%  Similarity=0.347  Sum_probs=198.4

Q ss_pred             CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCch--HHhc
Q psy7366         341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM--DLVR  418 (566)
Q Consensus       341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~--~~~~  418 (566)
                      .+|+++||+|+|+    +..+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++....  ...+
T Consensus         5 ~~Lev~~l~k~yg----~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r   80 (240)
T d1ji0a_           5 IVLEVQSLHVYYG----AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINR   80 (240)
T ss_dssp             EEEEEEEEEEEET----TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHH
T ss_pred             eEEEEeeEEEEEC----CEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHH
Confidence            4799999999997    678999999999999999999999999999999999999999999999999997532  2335


Q ss_pred             CceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHc-CCCCccccCcCcCChhHHHHHHHHHHHcCCCC
Q psy7366         419 SYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKF-ALGHYSDREVRTLSGGNKRKLSTAIALLGNPP  497 (566)
Q Consensus       419 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~  497 (566)
                      ..++|+||++.+|+.+||+||+.+..... .......+.+.++++.+ ++.+..++++++|||||||||+|||||+.+|+
T Consensus        81 ~gi~~~~q~~~l~~~ltv~en~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~~P~  159 (240)
T d1ji0a_          81 MGIALVPEGRRIFPELTVYENLMMGAYNR-KDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPK  159 (240)
T ss_dssp             TTEEEECSSCCCCTTSBHHHHHHGGGTTC-CCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCS
T ss_pred             hcccccCcccccCCcccHHHHHHHHHHhc-CCHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHHHHHHHHhCCC
Confidence            67999999999999999999997765433 23334455566777776 67888999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         498 LIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       498 lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      +|||||||+||||.++..++++|++++++|+|||++|||++++.++|||+++|++|+++++|+++++.
T Consensus       160 lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~  227 (240)
T d1ji0a_         160 LLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELL  227 (240)
T ss_dssp             EEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred             EeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence            99999999999999999999999999988999999999999999999999999999999999998874

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=4.7e-57  Score=445.66  Aligned_cols=219  Identities=24%  Similarity=0.358  Sum_probs=198.8

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-c-hHHhcC
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-S-MDLVRS  419 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~-~~~~~~  419 (566)
                      +|+++||+|+|+    +..+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++.. . ....+.
T Consensus         4 iL~v~nlsk~yg----~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~   79 (254)
T d1g6ha_           4 ILRTENIVKYFG----EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY   79 (254)
T ss_dssp             EEEEEEEEEEET----TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred             eEEEEEEEEEEC----CeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHh
Confidence            699999999997    6789999999999999999999999999999999999999999999999999965 2 233456


Q ss_pred             ceEEEecCCCCCCCCCHHHHHHHHHHh-------------cCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHH
Q psy7366         420 YIGYCPQFDALNDRLTPREHLEFYSRV-------------RNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKL  486 (566)
Q Consensus       420 ~i~~v~q~~~l~~~~tv~e~l~~~~~~-------------~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv  486 (566)
                      +|+|+||++.+++.+||.||+.++...             .........+++.++++.+++.+..++++.+|||||||||
T Consensus        80 gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~Qrv  159 (254)
T d1g6ha_          80 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLV  159 (254)
T ss_dssp             TEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHH
T ss_pred             cCCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchhhCCcHHHHHH
Confidence            799999999999999999999874321             1122334456788999999999999999999999999999


Q ss_pred             HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         487 STAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       487 ~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      +|||||+.+|++|||||||+|||+.++..++++|++++++|+|||++|||++++.++||||++|++|+|+++|+++++
T Consensus       160 ~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g~~~e~  237 (254)
T d1g6ha_         160 EIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEE  237 (254)
T ss_dssp             HHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHHH
T ss_pred             HHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCCEEEEEeCCEEEEEecHHHH
Confidence            999999999999999999999999999999999999988899999999999999999999999999999999998874

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=9.8e-56  Score=427.59  Aligned_cols=211  Identities=29%  Similarity=0.427  Sum_probs=191.8

Q ss_pred             EEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceE
Q psy7366         343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIG  422 (566)
Q Consensus       343 l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~  422 (566)
                      |++ ++.|+|+    +.. + ||||++. +|+++|+||||||||||+|+|+|+++|++|+|.++|+++..... .+++||
T Consensus         3 l~v-~~~k~~g----~~~-~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~-~~r~ig   73 (240)
T d2onka1           3 LKV-RAEKRLG----NFR-L-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPP-ERRGIG   73 (240)
T ss_dssp             EEE-EEEEEET----TEE-E-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCT-TTSCCB
T ss_pred             EEE-EEEEEEC----CEE-E-EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCH-HHcCce
Confidence            567 5788886    333 3 8999995 68999999999999999999999999999999999999976332 367899


Q ss_pred             EEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEe
Q psy7366         423 YCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLD  502 (566)
Q Consensus       423 ~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLD  502 (566)
                      ||||++.+|+.+||+||+.|+.  +..++.+.++++.++++.++|.+..++++.+|||||||||+|||||+.+|++||||
T Consensus        74 ~v~Q~~~l~~~ltV~enl~~~l--~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illlD  151 (240)
T d2onka1          74 FVPQDYALFPHLSVYRNIAYGL--RNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLD  151 (240)
T ss_dssp             CCCSSCCCCTTSCHHHHHHTTC--TTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEE
T ss_pred             eeccchhhcccchhhHhhhhhh--cccCHHHHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhccCCceEec
Confidence            9999999999999999999864  34556666788999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366         503 EPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  564 (566)
Q Consensus       503 EPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l  564 (566)
                      |||+||||.++..+++.|++++++ |.|||+||||++++.++|||+++|++|++++.|+++++
T Consensus       152 EPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el  214 (240)
T d2onka1         152 EPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKEL  214 (240)
T ss_dssp             STTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred             CccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEecHHHH
Confidence            999999999999999999999766 99999999999999999999999999999999999876

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.3e-53  Score=414.72  Aligned_cols=220  Identities=18%  Similarity=0.276  Sum_probs=185.8

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCc
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSY  420 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~  420 (566)
                      .|+++||+++|++. .++.+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.. ....+|++
T Consensus        11 ~I~~~nvsf~Y~~~-~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~~   89 (251)
T d1jj7a_          11 LVQFQDVSFAYPNR-PDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQ   89 (251)
T ss_dssp             CEEEEEEEECCTTS-TTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred             eEEEEEEEEECCCC-CCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHHHHH
Confidence            59999999999742 24569999999999999999999999999999999999999999999999999875 45667889


Q ss_pred             eEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHH-----HHHHHHHHHc--CCCCccccCcCcCChhHHHHHHHHHHHc
Q psy7366         421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLN-----TIVNESLNKF--ALGHYSDREVRTLSGGNKRKLSTAIALL  493 (566)
Q Consensus       421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgGqkqrv~la~al~  493 (566)
                      |+||||++.+|+ .|++||+.++..... ......     ....+.++.+  ++....++.+.+|||||||||+|||||+
T Consensus        90 i~~v~Q~~~lf~-~tv~eni~~g~~~~~-~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~  167 (251)
T d1jj7a_          90 VAAVGQEPQVFG-RSLQENIAYGLTQKP-TMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALI  167 (251)
T ss_dssp             EEEECSSCCCCS-SBHHHHHHCSCSSCC-CHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHT
T ss_pred             hhhccccccccC-cchhhhhhhhhcccc-hHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeeccc
Confidence            999999999886 599999987532111 111111     1122334444  3445567788899999999999999999


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         494 GNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       494 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      .+|+||||||||++||+.++..+++.|.++.++ |+|||+||||++.+. .||||++|++|+|+++|+++++.
T Consensus       168 ~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~-~aDrI~vl~~G~iv~~Gt~~eLl  239 (251)
T d1jj7a_         168 RKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVE-QADHILFLEGGAIREGGTHQQLM  239 (251)
T ss_dssp             TCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHH-TCSEEEEEETTEEEEEECHHHHH
T ss_pred             cCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEECCHHHHH
Confidence            999999999999999999999999999998765 899999999999875 59999999999999999999874

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=100.00  E-value=3.9e-53  Score=413.97  Aligned_cols=213  Identities=24%  Similarity=0.378  Sum_probs=180.6

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCc
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSY  420 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~  420 (566)
                      +|+++||+++|++   .+++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|++
T Consensus         1 mle~knvsf~Y~~---~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~   77 (242)
T d1mv5a_           1 MLSARHVDFAYDD---SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQ   77 (242)
T ss_dssp             CEEEEEEEECSSS---SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTT
T ss_pred             CEEEEEEEEECCC---CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhh
Confidence            5899999999963   4679999999999999999999999999999999999999999999999999876 44567889


Q ss_pred             eEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCC-------c----cccCcCcCChhHHHHHHHH
Q psy7366         421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGH-------Y----SDREVRTLSGGNKRKLSTA  489 (566)
Q Consensus       421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~----~~~~~~~LSgGqkqrv~la  489 (566)
                      ||||||++.+|+. |++||+.+.... ....    ....+.++..++..       .    ....+.+|||||||||+||
T Consensus        78 i~~v~Q~~~lf~~-ti~eNi~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iA  151 (242)
T d1mv5a_          78 IGFVSQDSAIMAG-TIRENLTYGLEG-DYTD----EDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIA  151 (242)
T ss_dssp             CCEECCSSCCCCE-EHHHHTTSCTTS-CSCH----HHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHH
T ss_pred             eEEEccccccCCc-chhhheeccccc-ccch----hhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHH
Confidence            9999999999886 999999764321 1111    22233344333321       1    2334567999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         490 IALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       490 ~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      |||+.+|+||||||||++||+.++..+++.|+++. +|+|||+||||++.+. .||||++|++|+|+++|+++++.
T Consensus       152 Ral~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~~~~-~~D~i~vl~~G~iv~~G~~~eLl  225 (242)
T d1mv5a_         152 RAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLSTIV-DADKIYFIEKGQITGSGKHNELV  225 (242)
T ss_dssp             HHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHHHHH-HCSEEEEEETTEECCCSCHHHHH
T ss_pred             HHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHc-CCCEEEEEECCHHHHH-hCCEEEEEECCEEEEECCHHHHH
Confidence            99999999999999999999999999999999986 4899999999999886 59999999999999999999874

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.5e-52  Score=407.33  Aligned_cols=212  Identities=20%  Similarity=0.359  Sum_probs=181.1

Q ss_pred             EEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCce
Q psy7366         343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSYI  421 (566)
Q Consensus       343 l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~i  421 (566)
                      |+++||+++|+.  +.+++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.. ....+|++|
T Consensus         2 I~~~nvsf~Y~~--~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i   79 (241)
T d2pmka1           2 ITFRNIRFRYKP--DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV   79 (241)
T ss_dssp             EEEEEEEEESST--TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred             eEEEEEEEEeCC--CCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceE
Confidence            789999999963  35679999999999999999999999999999999999999999999999999976 566778899


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCC-----------CCccccCcCcCChhHHHHHHHHH
Q psy7366         422 GYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFAL-----------GHYSDREVRTLSGGNKRKLSTAI  490 (566)
Q Consensus       422 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgGqkqrv~la~  490 (566)
                      +||||++.+|+ .||+||+.+...  ......    +.+.++..++           .......+..|||||||||+|||
T Consensus        80 ~~v~Q~~~lf~-~Ti~eNi~~~~~--~~~~~~----~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalAR  152 (241)
T d2pmka1          80 GVVLQDNVLLN-RSIIDNISLANP--GMSVEK----VIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIAR  152 (241)
T ss_dssp             EEECSSCCCTT-SBHHHHHCTTST--TCCHHH----HHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHH
T ss_pred             EEEecccccCC-ccccccccccCc--cccHHH----HHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhh
Confidence            99999998886 599999987532  112211    2222222222           23345677899999999999999


Q ss_pred             HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         491 ALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       491 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      ||+.+|+||||||||++||+.+...+++.|+++.+ |+|+|+|||+++.+. .||||++|++|+|+++|+++++.
T Consensus       153 al~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~~~-~~D~i~vl~~G~Iv~~G~~~ell  225 (241)
T d2pmka1         153 ALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRLSTVK-NADRIIVMEKGKIVEQGKHKELL  225 (241)
T ss_dssp             HHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT-TSEEEEECSSGGGGT-TSSEEEEEETTEEEEEECHHHHH
T ss_pred             hhhcccchhhhhCCccccCHHHHHHHHHHHHHHhC-CCEEEEEECCHHHHH-hCCEEEEEECCEEEEECCHHHHH
Confidence            99999999999999999999999999999999854 899999999998874 69999999999999999999873

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=4.7e-51  Score=401.78  Aligned_cols=218  Identities=21%  Similarity=0.366  Sum_probs=184.1

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCc
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSY  420 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~  420 (566)
                      .|+++||+++|+.  ...++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....++++
T Consensus        13 ~I~~~nvsf~Y~~--~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~   90 (253)
T d3b60a1          13 DLEFRNVTFTYPG--REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQ   90 (253)
T ss_dssp             CEEEEEEEECSSS--SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHT
T ss_pred             EEEEEEEEEEeCC--CCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhhhe
Confidence            4999999999974  24579999999999999999999999999999999999999999999999999976 55667888


Q ss_pred             eEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHH-----HHHHHHHc--CCCCccccCcCcCChhHHHHHHHHHHHc
Q psy7366         421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTI-----VNESLNKF--ALGHYSDREVRTLSGGNKRKLSTAIALL  493 (566)
Q Consensus       421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgGqkqrv~la~al~  493 (566)
                      |+|+||++.+|+. |+.+|+.+... .........+.     +.+.++.+  |+.......+.+|||||||||+|||||+
T Consensus        91 i~~v~Q~~~l~~~-ti~~n~~~~~~-~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~  168 (253)
T d3b60a1          91 VALVSQNVHLFND-TVANNIAYART-EEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALL  168 (253)
T ss_dssp             EEEECSSCCCCSS-BHHHHHHTTTT-SCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHH
T ss_pred             EEEEeeccccCCc-chhhhhhhcCc-ccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHh
Confidence            9999999988865 99999976521 12222221111     12233333  3444556778899999999999999999


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         494 GNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       494 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      .+|+||||||||++||+.++..+++.|+++.+ ++|||+||||++.+. .||||++|++|+|++.|+++++.
T Consensus       169 ~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~~~-~~D~v~vl~~G~Iv~~G~~~eLl  238 (253)
T d3b60a1         169 RDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLSTIE-QADEIVVVEDGIIVERGTHSELL  238 (253)
T ss_dssp             HCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGGTT-TCSEEEEEETTEEEEEECHHHHH
T ss_pred             cCCCEEEeccccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHHHHH-hCCEEEEEECCEEEEECCHHHHH
Confidence            99999999999999999999999999999864 899999999999875 69999999999999999999874

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=9.7e-51  Score=398.94  Aligned_cols=213  Identities=23%  Similarity=0.389  Sum_probs=182.8

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCc
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSY  420 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~  420 (566)
                      .|+++|++++|+.  +..++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|++
T Consensus        16 ~I~~~nvsf~Y~~--~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~   93 (255)
T d2hyda1          16 RIDIDHVSFQYND--NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQ   93 (255)
T ss_dssp             CEEEEEEEECSCS--SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHT
T ss_pred             EEEEEEEEEEeCC--CCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhhhe
Confidence            4999999999974  24679999999999999999999999999999999999999999999999999865 45678889


Q ss_pred             eEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCC-----------CccccCcCcCChhHHHHHHHH
Q psy7366         421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALG-----------HYSDREVRTLSGGNKRKLSTA  489 (566)
Q Consensus       421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGqkqrv~la  489 (566)
                      |+||||++.+|+. ||+|||.++..  ...    .+.+.++++..++.           ........+||||||||++||
T Consensus        94 i~~v~Q~~~lf~~-Ti~eNi~~g~~--~~~----~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iA  166 (255)
T d2hyda1          94 IGLVQQDNILFSD-TVKENILLGRP--TAT----DEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIA  166 (255)
T ss_dssp             EEEECSSCCCCSS-BHHHHHGGGCS--SCC----HHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHH
T ss_pred             eeeeeccccCCCC-CHHHHHhccCc--CCC----HHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHH
Confidence            9999999988864 99999987521  111    12344555555542           223345678999999999999


Q ss_pred             HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         490 IALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       490 ~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      |||+.+|+||||||||++||+.+...+++.|.++.+ ++|+|+|||+++.+. .||||++|++|+|++.|+++++.
T Consensus       167 Ral~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~-~~TvI~itH~~~~~~-~~D~ii~l~~G~iv~~G~~~eLl  240 (255)
T d2hyda1         167 RIFLNNPPILILDEATSALDLESESIIQEALDVLSK-DRTTLIVAHRLSTIT-HADKIVVIENGHIVETGTHRELI  240 (255)
T ss_dssp             HHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSSGGGTT-TCSEEEEEETTEEEEEECHHHHH
T ss_pred             HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHH-hCCEEEEEECCEEEEECCHHHHH
Confidence            999999999999999999999999999999998754 799999999999875 69999999999999999999873

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.9e-49  Score=385.99  Aligned_cols=210  Identities=20%  Similarity=0.282  Sum_probs=186.0

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCc
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSY  420 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~  420 (566)
                      +|+++|++++|        +|++|||+|++||++||+||||||||||+++|+|+. |++|+|.++|+++.. ....++..
T Consensus         3 il~~~dv~~~~--------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~   73 (231)
T d1l7vc_           3 VMQLQDVAEST--------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALH   73 (231)
T ss_dssp             EEEEEEECCTT--------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHH
T ss_pred             EEEEECcccCc--------eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCHHHHHhh
Confidence            68999996543        699999999999999999999999999999999976 689999999999865 34455667


Q ss_pred             eEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcC------
Q psy7366         421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLG------  494 (566)
Q Consensus       421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~------  494 (566)
                      .+|++|+.......++.+++.+...     .....+.+.++++.+++.+..++++.+|||||||||+|||||++      
T Consensus        74 ~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~  148 (231)
T d1l7vc_          74 RAYLSQQQTPPFATPVWHYLTLHQH-----DKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQAN  148 (231)
T ss_dssp             EEEECSCCCCCSSCBHHHHHHHHCS-----CTTCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTC
T ss_pred             ceeeeccccCCccccHHHHhhhccc-----hhhHHHHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHHHhhCcccC
Confidence            8999998776666799998876422     12224567889999999999999999999999999999999986      


Q ss_pred             -CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         495 -NPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       495 -~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                       +|+||||||||+|||+.++..++++|++++++|+|||++|||++++..+|||+++|++|+++++|+++++.
T Consensus       149 p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~  220 (231)
T d1l7vc_         149 PAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL  220 (231)
T ss_dssp             TTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHS
T ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEECCHHHHh
Confidence             77999999999999999999999999999989999999999999999999999999999999999998874

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=3.8e-46  Score=354.84  Aligned_cols=195  Identities=22%  Similarity=0.352  Sum_probs=169.6

Q ss_pred             eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCce
Q psy7366         342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYI  421 (566)
Q Consensus       342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i  421 (566)
                      .|+++||++.|+     +++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++..    .+.++
T Consensus         2 ~lev~~ls~~y~-----~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~----~~~~i   72 (200)
T d1sgwa_           2 KLEIRDLSVGYD-----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK----VKGKI   72 (200)
T ss_dssp             EEEEEEEEEESS-----SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG----GGGGE
T ss_pred             eEEEEEEEEEeC-----CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhH----hcCcE
Confidence            489999999994     469999999999999999999999999999999999999999999999998753    45679


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEE
Q psy7366         422 GYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFL  501 (566)
Q Consensus       422 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllL  501 (566)
                      +|+||+..++..+|+.+++.+....++....  ++.+.+.++.+++.+ .++++.+|||||||||+|||||+.+|++|||
T Consensus        73 ~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~--~~~~~~~l~~~~~~~-~~~~~~~LSgG~~qrv~ia~al~~~~~llll  149 (200)
T d1sgwa_          73 FFLPEEIIVPRKISVEDYLKAVASLYGVKVN--KNEIMDALESVEVLD-LKKKLGELSQGTIRRVQLASTLLVNAEIYVL  149 (200)
T ss_dssp             EEECSSCCCCTTSBHHHHHHHHHHHTTCCCC--HHHHHHHHHHTTCCC-TTSBGGGSCHHHHHHHHHHHHTTSCCSEEEE
T ss_pred             EEEeecccCCCCcCHHHHHHHHHHhcCCccC--HHHHHHHHHHcCCcc-cccccCcCCCcHHHHHHHHHHHhcCCCEEEE
Confidence            9999999999999999999887776654332  234667888888755 4578999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEEC
Q psy7366         502 DEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVN  552 (566)
Q Consensus       502 DEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~  552 (566)
                      ||||+|||+.++..+++.|.++.++ +.+||.++|++    .+||++.+|++
T Consensus       150 DEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~l----~~~D~~~~l~~  197 (200)
T d1sgwa_         150 DDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL----SYCDVNENLHK  197 (200)
T ss_dssp             ESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC----TTSSEEEEGGG
T ss_pred             cCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEechh----hhcchhhheee
Confidence            9999999999999999999998765 66666666764    47999988754

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.2e-46  Score=373.89  Aligned_cols=187  Identities=21%  Similarity=0.340  Sum_probs=156.6

Q ss_pred             CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHH
Q psy7366         358 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPR  437 (566)
Q Consensus       358 ~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~  437 (566)
                      ++++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|            +++|+||++.+++. ||+
T Consensus        48 g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g------------~i~~v~Q~~~l~~~-tv~  114 (281)
T d1r0wa_          48 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG------------RVSFCSQFSWIMPG-TIK  114 (281)
T ss_dssp             TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS------------CEEEECSSCCCCSE-EHH
T ss_pred             CCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC------------EEEEEeccccccCc-eee
Confidence            46899999999999999999999999999999999999999999999998            49999999998875 999


Q ss_pred             HHHHHHHHhcCCCchHHHHHHHHHHHHc-------CCC----CccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCC
Q psy7366         438 EHLEFYSRVRNVPSVLLNTIVNESLNKF-------ALG----HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTS  506 (566)
Q Consensus       438 e~l~~~~~~~~~~~~~~~~~~~~~l~~~-------~l~----~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~  506 (566)
                      ||+.++..   ....    ....+++..       .+.    ....+.+.+|||||||||+|||||+.+|+||||||||+
T Consensus       115 eni~~~~~---~~~~----~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts  187 (281)
T d1r0wa_         115 ENIIFGVS---YDEY----RYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFG  187 (281)
T ss_dssp             HHHTTTSC---CCHH----HHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCC
T ss_pred             cccccccc---ccch----HHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcCccc
Confidence            99976532   1111    122222222       222    23345667899999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366         507 GMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  565 (566)
Q Consensus       507 gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~  565 (566)
                      +||+.++..+++.+.....+++|+|+|||+++.+ +.||||++|++|+|+++|++++++
T Consensus       188 ~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l-~~aDrI~vl~~G~i~~~Gt~~eL~  245 (281)
T d1r0wa_         188 YLDVFTEEQVFESCVCKLMANKTRILVTSKMEHL-RKADKILILHQGSSYFYGTFSELQ  245 (281)
T ss_dssp             SSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHH-HTCSEEEEEETTEEEEEECHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHhhCCCEEEEEechHHHH-HhCCEEEEEECCEEEEECCHHHHh
Confidence            9999999999876444344589999999999876 579999999999999999999874

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=3e-43  Score=340.39  Aligned_cols=180  Identities=22%  Similarity=0.291  Sum_probs=156.2

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcc-cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI-DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLN   76 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~-~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~   76 (566)
                      .||||++|+++|++.|++   .+.+.+... ....++||||||++.+|+.+||+||+.|+...+++++.++++++.++++
T Consensus        43 aGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~  122 (239)
T d1v43a3          43 CGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAE  122 (239)
T ss_dssp             SSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHcCCCCCCCEEEEcceecccCCcccceEEEEeechhhcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            599999999999998877   233332211 1233569999999999999999999999988889999999999999999


Q ss_pred             HcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEecCChhHHHh
Q psy7366          77 KFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEA  155 (566)
Q Consensus        77 ~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiisH~~~~~~~  155 (566)
                      .+||+...++++.+|||||||||+|||||+.+|+||||||||++|||.++.+++++|++++++ |+|||+||||++++.+
T Consensus       123 ~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~  202 (239)
T d1v43a3         123 LLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMT  202 (239)
T ss_dssp             HTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHH
T ss_pred             HcCChhhhcCChhhCCHHHHHHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999655 9999999999999999


Q ss_pred             hcCEEEEEeCCEEEEecChhHHHhh
Q psy7366         156 LCTKLTIMVNGQFTCLGSATHLKSK  180 (566)
Q Consensus       156 ~~d~i~vl~~G~i~~~g~~~~~~~~  180 (566)
                      +||||++|++|+|++.|+++++..+
T Consensus       203 ~~dri~vm~~G~iv~~G~~~el~~~  227 (239)
T d1v43a3         203 MGDRIAVMNRGQLLQIGSPTEVYLR  227 (239)
T ss_dssp             HCSEEEEEETTEEEEEECHHHHHHC
T ss_pred             hCCEEEEEECCEEEEEcCHHHHHhC
Confidence            9999999999999999999998764

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=100.00  E-value=1.1e-42  Score=337.03  Aligned_cols=180  Identities=22%  Similarity=0.320  Sum_probs=163.3

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcc-------cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI-------DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTI   70 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~-------~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~   70 (566)
                      .||||++|+++|++.|++   .+.+.....       ....+.||||||+|.+++.+||+||+.++...++.+..+++++
T Consensus        40 aGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~  119 (240)
T d1g2912          40 CGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQR  119 (240)
T ss_dssp             SSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             ChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccccccceecccchhhcchhhhhHhhhhhHHHcCCCHHHHHHH
Confidence            599999999999998876   233322111       1123579999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEecCC
Q psy7366          71 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHN  149 (566)
Q Consensus        71 ~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiisH~  149 (566)
                      +.++++.+||++..++++++|||||||||+|||||+.+|+||||||||++|||.++..++++|+++.++ |.|||+||||
T Consensus       120 v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd  199 (240)
T d1g2912         120 VREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHD  199 (240)
T ss_dssp             HHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESC
T ss_pred             HHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999665 9999999999


Q ss_pred             hhHHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy7366         150 MEECEALCTKLTIMVNGQFTCLGSATHLKSK  180 (566)
Q Consensus       150 ~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~~  180 (566)
                      ++++..+||||++|++|+|++.|+++++..+
T Consensus       200 ~~~~~~~~drv~vm~~G~iv~~G~~~el~~~  230 (240)
T d1g2912         200 QVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK  230 (240)
T ss_dssp             HHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred             HHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence            9999999999999999999999999998754

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=7.3e-43  Score=336.61  Aligned_cols=180  Identities=24%  Similarity=0.332  Sum_probs=123.3

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCccc-ccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTID-KNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLN   76 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~~-~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~   76 (566)
                      +||||++|+++|++.|++   .+.+...... ...++||||||++.+++.+||+||+.|+....+.++.+.++++.++++
T Consensus        37 sGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~  116 (232)
T d2awna2          37 CGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAE  116 (232)
T ss_dssp             SSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEECSSCCC---------------------CHHHHHHHHHHH
T ss_pred             ChHHHHHHHHhcCCCCCCCEEEECCEECCCCchhhceeeeeccccccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            599999999999998877   3444432211 234579999999999999999999999988888888999999999999


Q ss_pred             HcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEecCChhHHHh
Q psy7366          77 KFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAV-SEGRCVILTSHNMEECEA  155 (566)
Q Consensus        77 ~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~-~~g~tviiisH~~~~~~~  155 (566)
                      .++|.+..++++.+|||||||||+|||||+++|++|||||||++|||.++.++++.|+++. +.|+|||++|||++++..
T Consensus       117 ~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~  196 (232)
T d2awna2         117 VLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMT  196 (232)
T ss_dssp             HC---------------------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHH
T ss_pred             hCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999985 569999999999999999


Q ss_pred             hcCEEEEEeCCEEEEecChhHHHhh
Q psy7366         156 LCTKLTIMVNGQFTCLGSATHLKSK  180 (566)
Q Consensus       156 ~~d~i~vl~~G~i~~~g~~~~~~~~  180 (566)
                      +||||++|++|+|++.|+++++...
T Consensus       197 ~~dri~vm~~G~iv~~G~~~el~~~  221 (232)
T d2awna2         197 LADKIVVLDAGRVAQVGKPLELYHY  221 (232)
T ss_dssp             HCSEEEEEETTEEEEEECHHHHHHS
T ss_pred             hCCEEEEEECCEEEEEeCHHHHHhC
Confidence            9999999999999999999998754

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=1.6e-42  Score=335.47  Aligned_cols=180  Identities=23%  Similarity=0.296  Sum_probs=162.8

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCc------ccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPT------IDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIV   71 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~------~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~   71 (566)
                      +||||++|++.|++.|++   .+.+....      ....+++||||||++.+|+.+||+||++|+.+..+++..++++++
T Consensus        42 sGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v  121 (242)
T d1oxxk2          42 AGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV  121 (242)
T ss_dssp             HHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHH
T ss_pred             CcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhccceEEeccccccccccHHHHhhhhhHhhcCCHHHHHHHH
Confidence            499999999999998877   23332211      112235799999999999999999999999988899999999999


Q ss_pred             HHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEecCCh
Q psy7366          72 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNM  150 (566)
Q Consensus        72 ~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiisH~~  150 (566)
                      .++++.+||++..++++++|||||||||+|||||+.+|++|||||||++|||.++.+++++|+++.++ |.|||++|||+
T Consensus       122 ~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~  201 (242)
T d1oxxk2         122 EEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDP  201 (242)
T ss_dssp             HHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCH
T ss_pred             HHHHhhcChHhhhhCChhhCCHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999655 99999999999


Q ss_pred             hHHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy7366         151 EECEALCTKLTIMVNGQFTCLGSATHLKSK  180 (566)
Q Consensus       151 ~~~~~~~d~i~vl~~G~i~~~g~~~~~~~~  180 (566)
                      +++.++||||++|++|+|++.|+++++...
T Consensus       202 ~~~~~~~dri~vm~~G~iv~~g~~~el~~~  231 (242)
T d1oxxk2         202 ADIFAIADRVGVLVKGKLVQVGKPEDLYDN  231 (242)
T ss_dssp             HHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred             HHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence            999999999999999999999999998764

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.4e-42  Score=333.53  Aligned_cols=180  Identities=26%  Similarity=0.341  Sum_probs=162.3

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcc---c---ccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI---D---KNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIV   71 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~---~---~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~   71 (566)
                      +||||++|+++|++-|++   .+.+.....   .   ..++.||||||++.+++.+||+||+.++....+++..+.++++
T Consensus        42 sGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v  121 (240)
T d3dhwc1          42 AGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV  121 (240)
T ss_dssp             SSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHH
T ss_pred             CCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhhhccccccccccccCCCccHHHHHHHHHHHcCCCHHHHHHHH
Confidence            599999999999998776   233332111   1   1124699999999999999999999999988899999999999


Q ss_pred             HHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEecCCh
Q psy7366          72 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNM  150 (566)
Q Consensus        72 ~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiisH~~  150 (566)
                      .++|+.+||++..++++.+|||||||||+|||||+.+|++|||||||++|||.++.+++++|+++.++ |.|||+||||+
T Consensus       122 ~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl  201 (240)
T d3dhwc1         122 TELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEM  201 (240)
T ss_dssp             HHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCH
T ss_pred             HHHHHHcCCchhhhCChhhCCHHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999765 99999999999


Q ss_pred             hHHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy7366         151 EECEALCTKLTIMVNGQFTCLGSATHLKSK  180 (566)
Q Consensus       151 ~~~~~~~d~i~vl~~G~i~~~g~~~~~~~~  180 (566)
                      +++..+||||++|++|+|++.|+++++...
T Consensus       202 ~~~~~~~dri~vl~~G~iv~~G~~~ei~~~  231 (240)
T d3dhwc1         202 DVVKRICDCVAVISNGELIEQDTVSEVFSH  231 (240)
T ss_dssp             HHHHHHCSEEEEEETTEEEEEEETTTTTCS
T ss_pred             HHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence            999999999999999999999999987543

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=5.7e-42  Score=330.84  Aligned_cols=177  Identities=26%  Similarity=0.371  Sum_probs=158.5

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcc-cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI-DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLN   76 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~-~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~   76 (566)
                      .||||++|+++|++.|++   .+.|.+... ...+++||||||++.+++.+||+||+.|+.  +..+..+.+++++++++
T Consensus        35 aGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~~l--~~~~~~~~~~~v~~~l~  112 (240)
T d2onka1          35 AGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGL--RNVERVERDRRVREMAE  112 (240)
T ss_dssp             SSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTC--TTSCHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHcCCCCCceEEEECCEECCcCCHHHcCceeeccchhhcccchhhHhhhhhh--cccCHHHHHHHHHHHHH
Confidence            599999999999998876   233322111 123457999999999999999999999875  45677788899999999


Q ss_pred             HcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEecCChhHHHh
Q psy7366          77 KFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEA  155 (566)
Q Consensus        77 ~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiisH~~~~~~~  155 (566)
                      .+||.+..++++.+|||||||||+|||||+.+|++|||||||++|||..+..+++.|+++.++ |.|||++|||++++.+
T Consensus       113 ~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~  192 (240)
T d2onka1         113 KLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAM  192 (240)
T ss_dssp             TTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHH
T ss_pred             hcCcHhhhhCChhhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999665 9999999999999999


Q ss_pred             hcCEEEEEeCCEEEEecChhHHHh
Q psy7366         156 LCTKLTIMVNGQFTCLGSATHLKS  179 (566)
Q Consensus       156 ~~d~i~vl~~G~i~~~g~~~~~~~  179 (566)
                      +||||++|++|++++.|+++++..
T Consensus       193 ~adri~vm~~G~ii~~G~~~el~~  216 (240)
T d2onka1         193 LADEVAVMLNGRIVEKGKLKELFS  216 (240)
T ss_dssp             HCSEEEEEETTEEEEEECHHHHHH
T ss_pred             hCCEEEEEECCEEEEEecHHHHhc
Confidence            999999999999999999999864

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=100.00  E-value=1.2e-41  Score=327.13  Aligned_cols=177  Identities=21%  Similarity=0.354  Sum_probs=157.6

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcc-cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI-DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLN   76 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~-~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~   76 (566)
                      .||||++|+++|++.|++   .+.+.+... ....++||||||++.+|+.+||+||+.|+...++.+.   .+++.++++
T Consensus        37 aGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~~~---~~~~~~~l~  113 (229)
T d3d31a2          37 AGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKD---PKRVLDTAR  113 (229)
T ss_dssp             HHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCC---HHHHHHHHH
T ss_pred             CcHHHHHHHHhcCcCCCCCEEEEccEeccccchhHhcceeeccccccCccccHHHHHHHHHhhccccH---HHHHHHHHH
Confidence            499999999999998876   244333221 1223579999999999999999999999988877654   467999999


Q ss_pred             HcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEecCChhHHHh
Q psy7366          77 KFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS-EGRCVILTSHNMEECEA  155 (566)
Q Consensus        77 ~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviiisH~~~~~~~  155 (566)
                      .+|+.+..++++.+|||||||||+|||||+.+|++|||||||++|||.++.+++++|+++.+ .|.|||++|||++++.+
T Consensus       114 ~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~  193 (229)
T d3d31a2         114 DLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARI  193 (229)
T ss_dssp             HTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             HhcchhhHhCChhhCCHHHhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999854 59999999999999999


Q ss_pred             hcCEEEEEeCCEEEEecChhHHHhh
Q psy7366         156 LCTKLTIMVNGQFTCLGSATHLKSK  180 (566)
Q Consensus       156 ~~d~i~vl~~G~i~~~g~~~~~~~~  180 (566)
                      +||||++|++|++++.|+++++..+
T Consensus       194 ~~drv~vm~~G~iv~~g~~~el~~~  218 (229)
T d3d31a2         194 MADRIAVVMDGKLIQVGKPEEIFEK  218 (229)
T ss_dssp             HCSEEEEESSSCEEEEECHHHHHSS
T ss_pred             hCCEEEEEECCEEEEEcCHHHHHhC
Confidence            9999999999999999999998754

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=8.2e-40  Score=318.14  Aligned_cols=180  Identities=32%  Similarity=0.413  Sum_probs=164.8

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcc--cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI--DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL   75 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~--~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l   75 (566)
                      .||||++|+++|++.|++   .+.+.+...  ...+..||||||++.+++.+||.||+.|....++.+..+.++.+++++
T Consensus        39 aGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l  118 (238)
T d1vpla_          39 AGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERAT  118 (238)
T ss_dssp             SSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHhcCCCCCCCEEEECcEecccChHHHHhhEeEeeeccccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            599999999999999876   244433221  123467999999999999999999999998888888888999999999


Q ss_pred             HHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHHh
Q psy7366          76 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEA  155 (566)
Q Consensus        76 ~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~  155 (566)
                      +.+++.+..++++.+||||||||++||+||+++|++|||||||+||||.++++++++|++++++|+|||++||+++++..
T Consensus       119 ~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~  198 (238)
T d1vpla_         119 EIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEF  198 (238)
T ss_dssp             HHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTT
T ss_pred             HhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999899999999999999999


Q ss_pred             hcCEEEEEeCCEEEEecChhHHHhh
Q psy7366         156 LCTKLTIMVNGQFTCLGSATHLKSK  180 (566)
Q Consensus       156 ~~d~i~vl~~G~i~~~g~~~~~~~~  180 (566)
                      +||||++|++|++++.|+++++...
T Consensus       199 ~~drv~vl~~G~iv~~g~~~el~~~  223 (238)
T d1vpla_         199 LCDRIALIHNGTIVETGTVEELKER  223 (238)
T ss_dssp             TCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred             hCCEEEEEECCEEEEEcCHHHHHhc
Confidence            9999999999999999999998754

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=1.2e-39  Score=313.95  Aligned_cols=173  Identities=20%  Similarity=0.278  Sum_probs=149.3

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCccc-----c--cccceeEEcCCCCCCCCCCHHHHHHHHHHhc---CCChhhH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTID-----K--NLSYIGYCPQFDALNDRLTPREHLEFYSRVR---NVPSVLL   67 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~~-----~--~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~   67 (566)
                      +||||++|++.|++.|++   .+.+......     .  ++..||||||++.+++.+||+||+.++....   +.+..+.
T Consensus        42 sGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~  121 (230)
T d1l2ta_          42 SGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER  121 (230)
T ss_dssp             SSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHH
T ss_pred             CCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchhhcceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHH
Confidence            599999999999998876   2333221111     1  1246999999999999999999999987654   3566677


Q ss_pred             HHHHHHHHHHcCCCc-ccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEE
Q psy7366          68 NTIVNESLNKFALGH-YSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVIL  145 (566)
Q Consensus        68 ~~~~~~~l~~~gl~~-~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tvii  145 (566)
                      .+++.++|+.+||.+ ..++++.+|||||||||+|||||+.+|+||||||||++|||.++..++++|+++.++ |+|||+
T Consensus       122 ~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~  201 (230)
T d1l2ta_         122 RKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVV  201 (230)
T ss_dssp             HHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             HHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEE
Confidence            788999999999976 579999999999999999999999999999999999999999999999999999654 999999


Q ss_pred             ecCChhHHHhhcCEEEEEeCCEEEEecCh
Q psy7366         146 TSHNMEECEALCTKLTIMVNGQFTCLGSA  174 (566)
Q Consensus       146 isH~~~~~~~~~d~i~vl~~G~i~~~g~~  174 (566)
                      ||||++++ ++||||++|++|+|+.+|.+
T Consensus       202 vTHd~~~a-~~~drv~~m~~G~Iv~~g~~  229 (230)
T d1l2ta_         202 VTHDINVA-RFGERIIYLKDGEVEREEKL  229 (230)
T ss_dssp             ECSCHHHH-TTSSEEEEEETTEEEEEEEC
T ss_pred             ECCCHHHH-HhCCEEEEEECCEEEEeccC
Confidence            99999877 69999999999999988753

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=1.5e-39  Score=319.69  Aligned_cols=180  Identities=19%  Similarity=0.227  Sum_probs=158.6

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCc-----c-----------cccccceeEEcCCCCCCCCCCHHHHHHHHH-Hhc
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPT-----I-----------DKNLSYIGYCPQFDALNDRLTPREHLEFYS-RVR   60 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~-----~-----------~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~-~~~   60 (566)
                      .||||++|+++|++.|++   .+.+....     .           ....++||||||+|.+++.+||.||+.++. ...
T Consensus        39 sGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~  118 (258)
T d1b0ua_          39 SGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL  118 (258)
T ss_dssp             SSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT
T ss_pred             CcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhcccccHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhc
Confidence            599999999999987765   22222111     0           012357999999999999999999998864 456


Q ss_pred             CCChhhHHHHHHHHHHHcCCCcc-cccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy7366          61 NVPSVLLNTIVNESLNKFALGHY-SDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE  139 (566)
Q Consensus        61 ~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~  139 (566)
                      +.+..+..+++.++++.+|+... .++++.+|||||||||+|||||+.+|++|||||||++||+.++.+++++|++++++
T Consensus       119 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~  198 (258)
T d1b0ua_         119 GLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE  198 (258)
T ss_dssp             CCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhccc
Confidence            78888899999999999999864 58889999999999999999999999999999999999999999999999999989


Q ss_pred             CCEEEEecCChhHHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy7366         140 GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK  180 (566)
Q Consensus       140 g~tviiisH~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~~  180 (566)
                      |.|||+||||++++..+||||+||++|+|++.|+++++...
T Consensus       199 g~til~vtHdl~~~~~~adri~vm~~G~iv~~g~~~ev~~~  239 (258)
T d1b0ua_         199 GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGN  239 (258)
T ss_dssp             TCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred             CCceEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence            99999999999999999999999999999999999998764

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=100.00  E-value=3.3e-39  Score=314.48  Aligned_cols=179  Identities=23%  Similarity=0.259  Sum_probs=155.1

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcc----cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI----DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNE   73 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~----~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~   73 (566)
                      .||||++|+++|++.|++   .+.|.+...    ...+.+|+|+||++.+|+.+||+||+.+..... .+.....+++++
T Consensus        43 aGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~-~~~~~~~~~~~~  121 (240)
T d1ji0a_          43 AGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNR-KDKEGIKRDLEW  121 (240)
T ss_dssp             SSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC-CCSSHHHHHHHH
T ss_pred             CcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhcccccCcccccCCcccHHHHHHHHHHhc-CCHHHHHHHHHH
Confidence            599999999999998876   233432211    122356999999999999999999998766433 344556677778


Q ss_pred             HHHHc-CCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhH
Q psy7366          74 SLNKF-ALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEE  152 (566)
Q Consensus        74 ~l~~~-gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~  152 (566)
                      +++.+ ++.+..++++++|||||||||+||+||+.+|++|||||||+||||.++.+++++|++++++|+|||++|||+++
T Consensus       122 ~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~  201 (240)
T d1ji0a_         122 IFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALG  201 (240)
T ss_dssp             HHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHH
T ss_pred             HHHHhhChHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence            88877 68888999999999999999999999999999999999999999999999999999998899999999999999


Q ss_pred             HHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy7366         153 CEALCTKLTIMVNGQFTCLGSATHLKSK  180 (566)
Q Consensus       153 ~~~~~d~i~vl~~G~i~~~g~~~~~~~~  180 (566)
                      +.++||||++|++|++++.|+++++...
T Consensus       202 ~~~~~drv~vl~~G~iv~~g~~~el~~~  229 (240)
T d1ji0a_         202 ALKVAHYGYVLETGQIVLEGKASELLDN  229 (240)
T ss_dssp             HHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred             HHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence            9999999999999999999999998653

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=5.9e-39  Score=315.77  Aligned_cols=179  Identities=21%  Similarity=0.229  Sum_probs=154.2

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCc----ccccccceeEEcCCCCCCCCCCHHHHHHHHHHhc-------------
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPT----IDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVR-------------   60 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~----~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~-------------   60 (566)
                      .||||++|+++|++.|++   .+.+.+..    ....+.+|+|+||++.+++.+||.||+.++....             
T Consensus        41 aGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~  120 (254)
T d1g6ha_          41 SGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKW  120 (254)
T ss_dssp             SSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSS
T ss_pred             CcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhcCCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcc
Confidence            599999999999998876   23332211    1123456999999999999999999998753221             


Q ss_pred             CCChhhHHHHHHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCC
Q psy7366          61 NVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEG  140 (566)
Q Consensus        61 ~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g  140 (566)
                      .....+..+++.++++.+++....++++.+|||||||||+|||||+.+|++|||||||+||||.++++++++|++++++|
T Consensus       121 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g  200 (254)
T d1g6ha_         121 IPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKG  200 (254)
T ss_dssp             CCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTT
T ss_pred             cccHHHHHHHHHHHHHhcCcchhccCchhhCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCC
Confidence            12334556788999999999999999999999999999999999999999999999999999999999999999998899


Q ss_pred             CEEEEecCChhHHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy7366         141 RCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  179 (566)
Q Consensus       141 ~tviiisH~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~  179 (566)
                      .|||++|||++++.++||||+||++|++++.|+++++..
T Consensus       201 ~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g~~~e~~~  239 (254)
T d1g6ha_         201 ITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIK  239 (254)
T ss_dssp             CEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHHHHH
T ss_pred             CEEEEEeCcHHHHHHhCCEEEEEeCCEEEEEecHHHHhh
Confidence            999999999999999999999999999999999988643

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-35  Score=287.39  Aligned_cols=177  Identities=16%  Similarity=0.195  Sum_probs=140.0

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcc---cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHH-----H
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI---DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLN-----T   69 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~---~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~-----~   69 (566)
                      .||||++|+++|++-|.+   .+.+.+...   ....+.|+||||+|.+|+ .||+||+.++..... ......     .
T Consensus        51 sGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~g~~~~~-~~~~~~~~~~~~  128 (251)
T d1jj7a_          51 SGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFG-RSLQENIAYGLTQKP-TMEEITAAAVKS  128 (251)
T ss_dssp             SSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHCSCSSCC-CHHHHHHHHHHH
T ss_pred             CcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHHHHHhhhccccccccC-cchhhhhhhhhcccc-hHHHHHHHHHHH
Confidence            599999999999998765   244432221   123457999999999885 599999987632221 111111     1


Q ss_pred             HHHHHHHHc--CCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEe
Q psy7366          70 IVNESLNKF--ALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILT  146 (566)
Q Consensus        70 ~~~~~l~~~--gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviii  146 (566)
                      ...+.++.+  |++...++...+|||||||||+|||||+++|+||||||||++||+.+...+++.|+++.++ |+|||+|
T Consensus       129 ~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~i  208 (251)
T d1jj7a_         129 GAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLI  208 (251)
T ss_dssp             TCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEE
T ss_pred             HHHHHHHhccccchhhHhccCccCChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEE
Confidence            223445555  4555567778899999999999999999999999999999999999999999999998654 8999999


Q ss_pred             cCChhHHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy7366         147 SHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK  180 (566)
Q Consensus       147 sH~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~~  180 (566)
                      |||++.+. .||||++|++|+|++.|+++++.+.
T Consensus       209 tH~l~~~~-~aDrI~vl~~G~iv~~Gt~~eLl~~  241 (251)
T d1jj7a_         209 TQHLSLVE-QADHILFLEGGAIREGGTHQQLMEK  241 (251)
T ss_dssp             CSCHHHHH-TCSEEEEEETTEEEEEECHHHHHHH
T ss_pred             eCCHHHHH-hCCEEEEEECCEEEEECCHHHHHhC
Confidence            99999875 5999999999999999999998764

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5.8e-35  Score=284.03  Aligned_cols=175  Identities=18%  Similarity=0.308  Sum_probs=135.9

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcc---cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHH----
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI---DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTI----   70 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~---~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~----   70 (566)
                      .||||++|+++|++-|.+   .+.+.+...   ...++.||||||+|.+|+ .||+||+.++...  .+..++...    
T Consensus        40 sGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~--~~~~~~~~~~~~~  116 (241)
T d2pmka1          40 SGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLANPG--MSVEKVIYAAKLA  116 (241)
T ss_dssp             SSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-SBHHHHHCTTSTT--CCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceEEEEecccccCC-ccccccccccCcc--ccHHHHHHHHHHH
Confidence            599999999999998765   244432211   123457999999999885 5999999876432  222222221    


Q ss_pred             -HHHHHHHc--CCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEec
Q psy7366          71 -VNESLNKF--ALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTS  147 (566)
Q Consensus        71 -~~~~l~~~--gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiis  147 (566)
                       +.+.+..+  |++...+.....|||||||||+|||||+.+|+||||||||++||+.+.+.+++.|+++. +|+|||+||
T Consensus       117 ~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~it  195 (241)
T d2pmka1         117 GAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIA  195 (241)
T ss_dssp             TCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEEC
T ss_pred             hhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHh-CCCEEEEEE
Confidence             12222222  12223456678999999999999999999999999999999999999999999999985 489999999


Q ss_pred             CChhHHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy7366         148 HNMEECEALCTKLTIMVNGQFTCLGSATHLKSK  180 (566)
Q Consensus       148 H~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~~  180 (566)
                      ||++.+. .||||+||++|+|++.|+++++...
T Consensus       196 H~l~~~~-~~D~i~vl~~G~Iv~~G~~~ell~~  227 (241)
T d2pmka1         196 HRLSTVK-NADRIIVMEKGKIVEQGKHKELLSE  227 (241)
T ss_dssp             SSGGGGT-TSSEEEEEETTEEEEEECHHHHHHS
T ss_pred             CCHHHHH-hCCEEEEEECCEEEEECCHHHHHhC
Confidence            9999875 6999999999999999999998653

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=100.00  E-value=4.6e-35  Score=285.36  Aligned_cols=172  Identities=22%  Similarity=0.296  Sum_probs=134.5

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCc---ccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPT---IDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNES   74 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~---~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~   74 (566)
                      .||||++|+++|++.|.+   .+.+.+..   ....+++||||||+|.+|+. ||+||+.++.... .+..    .+.+.
T Consensus        39 sGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~~-~~~~----~~~~~  112 (242)
T d1mv5a_          39 GGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAG-TIRENLTYGLEGD-YTDE----DLWQV  112 (242)
T ss_dssp             SSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCE-EHHHHTTSCTTSC-SCHH----HHHHH
T ss_pred             CCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheEEEccccccCCc-chhhheecccccc-cchh----hHHHH
Confidence            599999999999998765   23332211   12334679999999999876 9999997653221 2222    22333


Q ss_pred             HHHcCCCc-------cc----ccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy7366          75 LNKFALGH-------YS----DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCV  143 (566)
Q Consensus        75 l~~~gl~~-------~~----~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tv  143 (566)
                      ++..++..       ..    .....+|||||||||+|||||+.+|+||||||||++||+.++..+++.|+++. +|+||
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tv  191 (242)
T d1mv5a_         113 LDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTT  191 (242)
T ss_dssp             HHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEE
T ss_pred             HHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHc-CCCEE
Confidence            33333321       12    23346799999999999999999999999999999999999999999999985 59999


Q ss_pred             EEecCChhHHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy7366         144 ILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK  180 (566)
Q Consensus       144 iiisH~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~~  180 (566)
                      |+||||++.+.. ||||++|++|+|++.|+++++.+.
T Consensus       192 i~itH~l~~~~~-~D~i~vl~~G~iv~~G~~~eLl~~  227 (242)
T d1mv5a_         192 LVIAHRLSTIVD-ADKIYFIEKGQITGSGKHNELVAT  227 (242)
T ss_dssp             EEECCSHHHHHH-CSEEEEEETTEECCCSCHHHHHHH
T ss_pred             EEEECCHHHHHh-CCEEEEEECCEEEEECCHHHHHhC
Confidence            999999998865 999999999999999999998754

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=6.7e-34  Score=278.91  Aligned_cols=176  Identities=18%  Similarity=0.282  Sum_probs=138.8

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcc---cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHH----
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI---DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTI----   70 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~---~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~----   70 (566)
                      .||||++|+++|++-|.+   .+.+.+...   ......|+||||+|.++. .|+++|+.++. ....+..++.+.    
T Consensus        52 sGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~~n~~~~~-~~~~~~~~i~~a~~~~  129 (253)
T d3b60a1          52 SGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFN-DTVANNIAYAR-TEEYSREQIEEAARMA  129 (253)
T ss_dssp             SSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCS-SBHHHHHHTTT-TSCCCHHHHHHHHHTT
T ss_pred             ChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhhheEEEEeeccccCC-cchhhhhhhcC-cccCCHHHHHHHHHHH
Confidence            599999999999998766   244432221   123456999999998885 59999998753 222333333221    


Q ss_pred             -HHHHHHHc--CCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEec
Q psy7366          71 -VNESLNKF--ALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTS  147 (566)
Q Consensus        71 -~~~~l~~~--gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiis  147 (566)
                       +.+.++.+  |++...+..+.+|||||||||+|||||+++|+|||||||||+||+.+...+++.|+++. +|+|||+||
T Consensus       130 ~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~it  208 (253)
T d3b60a1         130 YAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIA  208 (253)
T ss_dssp             TCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH-TTSEEEEEC
T ss_pred             hHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhc-cCCEEEEEE
Confidence             22334444  44455566778999999999999999999999999999999999999999999999985 489999999


Q ss_pred             CChhHHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy7366         148 HNMEECEALCTKLTIMVNGQFTCLGSATHLKSK  180 (566)
Q Consensus       148 H~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~~  180 (566)
                      ||++.+. .||||+||++|+|++.|+++++.+.
T Consensus       209 H~l~~~~-~~D~v~vl~~G~Iv~~G~~~eLl~~  240 (253)
T d3b60a1         209 HRLSTIE-QADEIVVVEDGIIVERGTHSELLAQ  240 (253)
T ss_dssp             SCGGGTT-TCSEEEEEETTEEEEEECHHHHHHH
T ss_pred             CCHHHHH-hCCEEEEEECCEEEEECCHHHHHhC
Confidence            9999885 6999999999999999999998754

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.7e-33  Score=271.43  Aligned_cols=173  Identities=17%  Similarity=0.231  Sum_probs=146.1

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCccc---ccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTID---KNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNES   74 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~~---~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~   74 (566)
                      .||||++|+++|+. +++   .+.+.+....   ......+|++|+.......++++++.+...     .....+.++++
T Consensus        36 aGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~~  109 (231)
T d1l7vc_          36 AGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQH-----DKTRTELLNDV  109 (231)
T ss_dssp             SSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHHHHHHHHCS-----CTTCHHHHHHH
T ss_pred             CcHHHHHHHHhCCC-CCceEEEECCEECCcCCHHHHHhhceeeeccccCCccccHHHHhhhccc-----hhhHHHHHHHH
Confidence            59999999999965 544   1233221111   122358999999877777899999876532     22345678899


Q ss_pred             HHHcCCCcccccccccCChhHHHHHHHHHHHhC-------CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEec
Q psy7366          75 LNKFALGHYSDREVRTLSGGNKRKLSTAIALLG-------NPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTS  147 (566)
Q Consensus        75 l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~-------~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiis  147 (566)
                      ++.+++....++++.+|||||||||+||+||++       +|+||||||||+|||+.++..++++|++++++|.|||++|
T Consensus       110 ~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vt  189 (231)
T d1l7vc_         110 AGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSS  189 (231)
T ss_dssp             HHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECC
T ss_pred             HHhcCCHhHhCcChhhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence            999999999999999999999999999999986       7799999999999999999999999999999999999999


Q ss_pred             CChhHHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy7366         148 HNMEECEALCTKLTIMVNGQFTCLGSATHLKS  179 (566)
Q Consensus       148 H~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~  179 (566)
                      ||++++.++||||++|++|++++.|+++++..
T Consensus       190 Hdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~  221 (231)
T d1l7vc_         190 HDLNHTLRHAHRAWLLKGGKMLASGRREEVLT  221 (231)
T ss_dssp             CCHHHHHHHCSBCCBEETTEECCCSBHHHHSC
T ss_pred             CCHHHHHHHCCEEEEEECCEEEEECCHHHHhC
Confidence            99999999999999999999999999998753

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=6.3e-34  Score=278.72  Aligned_cols=171  Identities=23%  Similarity=0.282  Sum_probs=136.5

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcc---cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI---DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNES   74 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~---~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~   74 (566)
                      .||||++|+++|++.|.+   .+.+.+...   ...++.|+||||++.+|+ .||+||+.|+...  ..    .+++.++
T Consensus        55 sGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~-~Ti~eNi~~g~~~--~~----~~~~~~a  127 (255)
T d2hyda1          55 GGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFS-DTVKENILLGRPT--AT----DEEVVEA  127 (255)
T ss_dssp             SSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCS-SBHHHHHGGGCSS--CC----HHHHHHH
T ss_pred             CcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhhheeeeeeccccCCC-CCHHHHHhccCcC--CC----HHHHHHH
Confidence            599999999999998776   234432221   123457999999999885 5999999876321  12    2334445


Q ss_pred             HHHcCCC-----------cccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy7366          75 LNKFALG-----------HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCV  143 (566)
Q Consensus        75 l~~~gl~-----------~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tv  143 (566)
                      ++..++.           ........+||||||||++|||||+++|+|||||||||+||+.+...+++.|+++. +++||
T Consensus       128 l~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~-~~~Tv  206 (255)
T d2hyda1         128 AKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTT  206 (255)
T ss_dssp             HHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEE
T ss_pred             HHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-cCCEE
Confidence            5555442           23344567899999999999999999999999999999999999999999999874 58999


Q ss_pred             EEecCChhHHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy7366         144 ILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK  180 (566)
Q Consensus       144 iiisH~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~~  180 (566)
                      |+||||++.+. .||||++|++|+|++.|+++++.+.
T Consensus       207 I~itH~~~~~~-~~D~ii~l~~G~iv~~G~~~eLl~~  242 (255)
T d2hyda1         207 LIVAHRLSTIT-HADKIVVIENGHIVETGTHRELIAK  242 (255)
T ss_dssp             EEECSSGGGTT-TCSEEEEEETTEEEEEECHHHHHHT
T ss_pred             EEEeCCHHHHH-hCCEEEEEECCEEEEECCHHHHHhC
Confidence            99999999875 6999999999999999999998764

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.6e-32  Score=273.21  Aligned_cols=163  Identities=20%  Similarity=0.250  Sum_probs=126.3

Q ss_pred             CCcchHHHHHhccccCCCccCCCCCcccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHHHc--
Q psy7366           1 MGLTTTPKRVVTLLLTTQKVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKF--   78 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~--   78 (566)
                      .||||++|+|+|++.|.+.   .  .  ....+|+|+||++.+++. ||+||+.|+..   .+...    ..++++..  
T Consensus        73 sGKSTLl~~i~Gl~~p~~G---~--I--~~~g~i~~v~Q~~~l~~~-tv~eni~~~~~---~~~~~----~~~~~~~~~~  137 (281)
T d1r0wa_          73 SGKTSLLMLILGELEASEG---I--I--KHSGRVSFCSQFSWIMPG-TIKENIIFGVS---YDEYR----YKSVVKACQL  137 (281)
T ss_dssp             SSHHHHHHHHHTSSCCSEE---E--E--ECCSCEEEECSSCCCCSE-EHHHHHTTTSC---CCHHH----HHHHHHHTTC
T ss_pred             ChHHHHHHHHhCCCcCCCc---E--E--EECCEEEEEeccccccCc-eeecccccccc---ccchH----HHHHHHHHHh
Confidence            5999999999999976642   1  1  112259999999998875 99999977532   12221    22222222  


Q ss_pred             -----CCCc----ccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCC
Q psy7366          79 -----ALGH----YSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN  149 (566)
Q Consensus        79 -----gl~~----~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~  149 (566)
                           .+..    ..++...+|||||||||+|||||+++|+||||||||++||+.+.+++++.+......|+|+|+|||+
T Consensus       138 ~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~  217 (281)
T d1r0wa_         138 QQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSK  217 (281)
T ss_dssp             HHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSC
T ss_pred             HHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEech
Confidence                 2222    2345566799999999999999999999999999999999999999987644434568999999999


Q ss_pred             hhHHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy7366         150 MEECEALCTKLTIMVNGQFTCLGSATHLKS  179 (566)
Q Consensus       150 ~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~  179 (566)
                      ++.+ ..||||++|++|++++.|+++++..
T Consensus       218 ~~~l-~~aDrI~vl~~G~i~~~Gt~~eL~~  246 (281)
T d1r0wa_         218 MEHL-RKADKILILHQGSSYFYGTFSELQS  246 (281)
T ss_dssp             HHHH-HTCSEEEEEETTEEEEEECHHHHHH
T ss_pred             HHHH-HhCCEEEEEECCEEEEECCHHHHhc
Confidence            9876 5699999999999999999999865

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.95  E-value=1.2e-28  Score=233.47  Aligned_cols=156  Identities=20%  Similarity=0.273  Sum_probs=126.8

Q ss_pred             CCcchHHHHHhccccCCC---ccCCCCCcccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Q psy7366           1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNK   77 (566)
Q Consensus         1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~   77 (566)
                      +||||++|+++|++.|.+   .+.+.+  ....+.+++|+||++.++..+|+.+++.+....++....  ++++.+.++.
T Consensus        38 sGKSTLl~~i~gl~~p~~G~I~~~g~~--i~~~~~~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~--~~~~~~~l~~  113 (200)
T d1sgwa_          38 IGKTTLLKTISTYLKPLKGEIIYNGVP--ITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVN--KNEIMDALES  113 (200)
T ss_dssp             SSHHHHHHHHTTSSCCSEEEEEETTEE--GGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCC--HHHHHHHHHH
T ss_pred             ChHHHHHHHHhcccccCCCEEEECCEe--hhHhcCcEEEEeecccCCCCcCHHHHHHHHHHhcCCccC--HHHHHHHHHH
Confidence            599999999999998777   233322  123345799999999999999999999988777654332  3456778888


Q ss_pred             cCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEecCChhHHHhh
Q psy7366          78 FALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEAL  156 (566)
Q Consensus        78 ~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiisH~~~~~~~~  156 (566)
                      +++.+ .++++.+||||||||++||+||+.+|++|||||||+|||+.++.++++.|.++.++ |.+||.++|++    ++
T Consensus       114 ~~~~~-~~~~~~~LSgG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~l----~~  188 (200)
T d1sgwa_         114 VEVLD-LKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL----SY  188 (200)
T ss_dssp             TTCCC-TTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC----TT
T ss_pred             cCCcc-cccccCcCCCcHHHHHHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEechh----hh
Confidence            88754 46789999999999999999999999999999999999999999999999998654 66666666765    47


Q ss_pred             cCEEEEEeC
Q psy7366         157 CTKLTIMVN  165 (566)
Q Consensus       157 ~d~i~vl~~  165 (566)
                      ||++.+|++
T Consensus       189 ~D~~~~l~~  197 (200)
T d1sgwa_         189 CDVNENLHK  197 (200)
T ss_dssp             SSEEEEGGG
T ss_pred             cchhhheee
Confidence            999998854

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.68  E-value=1.9e-19  Score=165.75  Aligned_cols=156  Identities=11%  Similarity=-0.003  Sum_probs=102.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCC----CCCCCCCHHHHHHHHHHhcCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFD----ALNDRLTPREHLEFYSRVRNV  449 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~----~l~~~~tv~e~l~~~~~~~~~  449 (566)
                      .++|+||||||||||+++|+|.++|+.|.+.+.+.+.....    .+.++.....    ......+.....    ..   
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---   70 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETK----KRTGFRIITTEGKKKIFSSKFFTSKK----LV---   70 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC----------CCEEEEEETTCCEEEEEETTCCCSS----EE---
T ss_pred             EEEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHHH----HhhhhhhhhhhHHHHHHhhhhhhhhh----hh---
Confidence            47899999999999999999999999999999886643211    1223221110    000000000000    00   


Q ss_pred             CchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCc
Q psy7366         450 PSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS-EGR  528 (566)
Q Consensus       450 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~  528 (566)
                                   ..+    ..+.....+|+|++++.++++++..+|++|++|||....+  ....+.+.+.++.+ .+.
T Consensus        71 -------------~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~--~~~~~~~~l~~~l~~~~~  131 (178)
T d1ye8a1          71 -------------GSY----GVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMEL--FSKKFRDLVRQIMHDPNV  131 (178)
T ss_dssp             -------------TTE----EECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGG--GCHHHHHHHHHHHTCTTS
T ss_pred             -------------hhh----hcCcchhhhhhhhhHHHHHHHHHhcCCCceeecCCCccch--hhHHHHHHHHHHhccCCC
Confidence                         000    1122334589999999999999999999999999854432  33445556666544 489


Q ss_pred             EEEEEccCHHHHHhhCCEEEEEECCEEEEecC
Q psy7366         529 CVILTSHNMEECEALCTKLTIMVNGQFTCLGS  560 (566)
Q Consensus       529 tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~  560 (566)
                      ++|+++|+.. ...+|+++..+.+|+++..+.
T Consensus       132 ~il~~~h~~~-~~~~~~~i~~~~~~~i~~v~~  162 (178)
T d1ye8a1         132 NVVATIPIRD-VHPLVKEIRRLPGAVLIELTP  162 (178)
T ss_dssp             EEEEECCSSC-CSHHHHHHHTCTTCEEEECCT
T ss_pred             EEEEEEccHH-HHHhhceEEEEeCCEEEEECC
Confidence            9999999964 456789999999999987654

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.20  E-value=1.4e-10  Score=114.90  Aligned_cols=79  Identities=27%  Similarity=0.297  Sum_probs=65.8

Q ss_pred             cCcCcCChhHHHHHHHHHH----HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEE
Q psy7366         473 REVRTLSGGNKRKLSTAIA----LLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLT  548 (566)
Q Consensus       473 ~~~~~LSgGqkqrv~la~a----l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~  548 (566)
                      ..+..+|+|+|+...++..    ...++.++++|||-++|+|.....+.+.|++..+ +.-||++||....+. .+|+++
T Consensus       215 ~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~-~~QviitTHsp~~~~-~~d~~~  292 (308)
T d1e69a_         215 QKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK-HTQFIVITHNKIVME-AADLLH  292 (308)
T ss_dssp             CBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCTTGGG-GCSEEE
T ss_pred             chhhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHHHHH-hcccEE
Confidence            3567899999999877665    3456789999999999999999999999998754 578999999988775 589986


Q ss_pred             E--EECC
Q psy7366         549 I--MVNG  553 (566)
Q Consensus       549 ~--l~~G  553 (566)
                      .  +.+|
T Consensus       293 ~v~~~~g  299 (308)
T d1e69a_         293 GVTMVNG  299 (308)
T ss_dssp             EEEESSS
T ss_pred             EEEEeCC
Confidence            5  5555

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.85  E-value=3.3e-09  Score=109.15  Aligned_cols=78  Identities=21%  Similarity=0.215  Sum_probs=65.4

Q ss_pred             ccCcCcCChhHHHHHHHHHHH----cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEE
Q psy7366         472 DREVRTLSGGNKRKLSTAIAL----LGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKL  547 (566)
Q Consensus       472 ~~~~~~LSgGqkqrv~la~al----~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv  547 (566)
                      ..++..||||||.+++||..+    ..++++++||||+++||+..+..+.++|.++...+.-+|++||+...+ ..||++
T Consensus       327 ~~~~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~-~~ad~~  405 (427)
T d1w1wa_         327 FKDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMF-EKSDAL  405 (427)
T ss_dssp             CCCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHH-TTCSEE
T ss_pred             hhhhhhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHH-HhcccE
Confidence            356688999999998877544    567789999999999999999999999988765566799999998765 568998


Q ss_pred             EEE
Q psy7366         548 TIM  550 (566)
Q Consensus       548 ~~l  550 (566)
                      +.+
T Consensus       406 ~~V  408 (427)
T d1w1wa_         406 VGV  408 (427)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            755

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.79  E-value=3.6e-11  Score=109.24  Aligned_cols=84  Identities=10%  Similarity=-0.062  Sum_probs=64.8

Q ss_pred             cccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHH-HhCCCEEEEecCChhHHHhhcCEEEEEe
Q psy7366          86 REVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERA-VSEGRCVILTSHNMEECEALCTKLTIMV  164 (566)
Q Consensus        86 ~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l-~~~g~tviiisH~~~~~~~~~d~i~vl~  164 (566)
                      ....++|+|++++.++++++..+|++|++|||....+  ....+.+.|.++ ...+.++|+++|+.+ ...+||++..+.
T Consensus        77 ~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~--~~~~~~~~l~~~l~~~~~~il~~~h~~~-~~~~~~~i~~~~  153 (178)
T d1ye8a1          77 VQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMEL--FSKKFRDLVRQIMHDPNVNVVATIPIRD-VHPLVKEIRRLP  153 (178)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGG--GCHHHHHHHHHHHTCTTSEEEEECCSSC-CSHHHHHHHTCT
T ss_pred             cchhhhhhhhhHHHHHHHHHhcCCCceeecCCCccch--hhHHHHHHHHHHhccCCCEEEEEEccHH-HHHhhceEEEEe
Confidence            3445689999999999999999999999999854432  233444444454 345899999999975 456899999999


Q ss_pred             CCEEEEec
Q psy7366         165 NGQFTCLG  172 (566)
Q Consensus       165 ~G~i~~~g  172 (566)
                      +|+++..+
T Consensus       154 ~~~i~~v~  161 (178)
T d1ye8a1         154 GAVLIELT  161 (178)
T ss_dssp             TCEEEECC
T ss_pred             CCEEEEEC
Confidence            99998654

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.78  E-value=7.2e-09  Score=106.54  Aligned_cols=77  Identities=22%  Similarity=0.252  Sum_probs=63.8

Q ss_pred             cccccCChhHHHHHHHHHHH----hCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHHhhcCEEE
Q psy7366          86 REVRTLSGGNKRKLSTAIAL----LGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLT  161 (566)
Q Consensus        86 ~~~~~LSgG~kqrl~iA~al----~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~~~d~i~  161 (566)
                      ..+..||||||.+++||-.+    ..++++++||||+++||+..+..+.++|+++...+.-+|++||+...+. .||+++
T Consensus       328 ~~~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~-~ad~~~  406 (427)
T d1w1wa_         328 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFE-KSDALV  406 (427)
T ss_dssp             CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHT-TCSEEE
T ss_pred             hhhhhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHH-hcccEE
Confidence            35578999999998877554    3577899999999999999999999999987555666999999987665 589977


Q ss_pred             EE
Q psy7366         162 IM  163 (566)
Q Consensus       162 vl  163 (566)
                      .+
T Consensus       407 ~V  408 (427)
T d1w1wa_         407 GV  408 (427)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.33  E-value=4.1e-06  Score=78.38  Aligned_cols=49  Identities=18%  Similarity=0.182  Sum_probs=38.0

Q ss_pred             cCCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCcEEEEEccCHHHHH
Q psy7366         493 LGNPPLIFLDEPTSGMDPGARRFLWTC-IERAVSEGRCVILTSHNMEECE  541 (566)
Q Consensus       493 ~~~p~lllLDEPt~gLD~~~~~~l~~~-l~~~~~~g~tvl~vsHd~~~~~  541 (566)
                      +.+..++|+||+.+|=|+.....+... ++.+.+.+..++++||..+...
T Consensus       112 ~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~  161 (224)
T d1ewqa2         112 ATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA  161 (224)
T ss_dssp             CCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred             CCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechhhhh
Confidence            345669999999999999887766554 4556666889999999976544

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.24  E-value=1.8e-06  Score=84.51  Aligned_cols=79  Identities=27%  Similarity=0.322  Sum_probs=66.0

Q ss_pred             cccccCChhHHHHHHHHHHH----hCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHHhhcCEEE
Q psy7366          86 REVRTLSGGNKRKLSTAIAL----LGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLT  161 (566)
Q Consensus        86 ~~~~~LSgG~kqrl~iA~al----~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~~~d~i~  161 (566)
                      ..+..+|+|+|+.+.++..+    ...|.++++|||-++|+|.....+.+.|++.. .+.=||++||....++ .+|+++
T Consensus       215 ~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~-~~~QviitTHsp~~~~-~~d~~~  292 (308)
T d1e69a_         215 QKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKIVME-AADLLH  292 (308)
T ss_dssp             CBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTTGGG-GCSEEE
T ss_pred             chhhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhc-cCCEEEEEECCHHHHH-hcccEE
Confidence            45788999999988776653    45789999999999999999999999999874 4678999999997775 589996


Q ss_pred             E--EeCC
Q psy7366         162 I--MVNG  166 (566)
Q Consensus       162 v--l~~G  166 (566)
                      .  +++|
T Consensus       293 ~v~~~~g  299 (308)
T d1e69a_         293 GVTMVNG  299 (308)
T ss_dssp             EEEESSS
T ss_pred             EEEEeCC
Confidence            5  5566

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.22  E-value=4.5e-06  Score=78.68  Aligned_cols=48  Identities=19%  Similarity=0.218  Sum_probs=36.7

Q ss_pred             cCCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhC-CcEEEEEccCHHHH
Q psy7366         493 LGNPPLIFLDEPTSGMDPGARRFLWT-CIERAVSE-GRCVILTSHNMEEC  540 (566)
Q Consensus       493 ~~~p~lllLDEPt~gLD~~~~~~l~~-~l~~~~~~-g~tvl~vsHd~~~~  540 (566)
                      +.+..++|+||+.+|=++.....+.. ++..+... +..++++||..+..
T Consensus       118 ~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~  167 (234)
T d1wb9a2         118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT  167 (234)
T ss_dssp             CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred             cccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHHh
Confidence            44556999999999999998887754 56667555 56889999986544

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=97.52  E-value=0.00019  Score=68.57  Aligned_cols=34  Identities=24%  Similarity=0.373  Sum_probs=27.5

Q ss_pred             ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHH
Q psy7366         360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT  393 (566)
Q Consensus       360 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~  393 (566)
                      +-|+++..=+.+|+++.|.|+.|+|||||+.-|+
T Consensus        23 ~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la   56 (277)
T d1cr2a_          23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQA   56 (277)
T ss_dssp             TTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHH
T ss_pred             hhHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence            3455554447999999999999999999987776

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=97.35  E-value=6.7e-06  Score=74.26  Aligned_cols=33  Identities=30%  Similarity=0.332  Sum_probs=28.9

Q ss_pred             eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHC
Q psy7366         361 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG  394 (566)
Q Consensus       361 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G  394 (566)
                      -+++.+|++.+| +++|+|||||||||+|.+|.-
T Consensus        14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~   46 (222)
T d1qhla_          14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVT   46 (222)
T ss_dssp             TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHH
T ss_pred             CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence            467888888876 999999999999999999963

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=97.21  E-value=0.004  Score=58.69  Aligned_cols=46  Identities=15%  Similarity=0.209  Sum_probs=33.5

Q ss_pred             HHcCCCCEEEEeCCCC-----CCCHHHHHHHHHHHHHHHhC-CcEEEEEccC
Q psy7366         491 ALLGNPPLIFLDEPTS-----GMDPGARRFLWTCIERAVSE-GRCVILTSHN  536 (566)
Q Consensus       491 al~~~p~lllLDEPt~-----gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd  536 (566)
                      ....+|+++++|--++     --|......++..|..+++. +++||++.|-
T Consensus       128 ~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~  179 (274)
T d1nlfa_         128 RAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHA  179 (274)
T ss_dssp             HHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred             HhccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCCCceehhhhc
Confidence            3457999999995432     12566666777778777655 9999999994

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.09  E-value=0.0023  Score=59.10  Aligned_cols=149  Identities=11%  Similarity=-0.003  Sum_probs=79.1

Q ss_pred             EeCCcEEEEEcCCCCcHHHHHHHHHCC-CCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhc
Q psy7366         369 VGRGECFGLLGLNGAGKTTTFKMLTGA-IKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVR  447 (566)
Q Consensus       369 i~~Ge~~~l~G~NGsGKSTLl~~i~G~-~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~  447 (566)
                      +++|.++.|.|++|+|||||..-++-- .+.  |                 ..+.|+.-+      ++..+....... .
T Consensus        23 i~~gsl~li~G~pGsGKT~l~~qia~~~~~~--~-----------------~~~~~is~e------~~~~~~~~~~~~-~   76 (242)
T d1tf7a2          23 FFKDSIILATGATGTGKTLLVSRFVENACAN--K-----------------ERAILFAYE------ESRAQLLRNAYS-W   76 (242)
T ss_dssp             EESSCEEEEEECTTSSHHHHHHHHHHHHHTT--T-----------------CCEEEEESS------SCHHHHHHHHHT-T
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHHHHHHHh--c-----------------cccceeecc------CCHHHHHHHHHH-c
Confidence            789999999999999999998666432 111  1                 124454422      244433322221 1


Q ss_pred             CCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCC---CCCCCHHHHHHHHHHHHHH-
Q psy7366         448 NVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEP---TSGMDPGARRFLWTCIERA-  523 (566)
Q Consensus       448 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEP---t~gLD~~~~~~l~~~l~~~-  523 (566)
                      +.+..       + +...+.....+.........+.-.......--.+|+++++|--   ..+.+..........+..+ 
T Consensus        77 ~~~~~-------~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vviDs~~~~~~~~~~~~~~~~~~~l~~~~  148 (242)
T d1tf7a2          77 GMDFE-------E-MERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYA  148 (242)
T ss_dssp             SCCHH-------H-HHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHH
T ss_pred             CCChH-------H-HhhcCceEEEEeecchhhHHHHHHHHHHHHHhcCCceeeeecchhhhcCCCHHHHHHHHHHHHHHH
Confidence            22111       1 1122221122222233333332222222223468899999954   3444665555555555454 


Q ss_pred             HhCCcEEEEEccCH----------HHHHhhCCEEEEEE
Q psy7366         524 VSEGRCVILTSHNM----------EECEALCTKLTIMV  551 (566)
Q Consensus       524 ~~~g~tvl~vsHd~----------~~~~~~~drv~~l~  551 (566)
                      ++.+.++++++|--          ..+..+||-++.|.
T Consensus       149 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~  186 (242)
T d1tf7a2         149 KQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQ  186 (242)
T ss_dssp             HHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred             HHcCCeEEEEEeeEeeccccccCCcceeeecceEEEEE
Confidence            45689999988742          23456789998774

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.03  E-value=0.00014  Score=63.56  Aligned_cols=24  Identities=33%  Similarity=0.434  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAIK  397 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~~  397 (566)
                      +++|+|++|||||||++.|+..++
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l~   27 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPALC   27 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            789999999999999999986544

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.00  E-value=0.00018  Score=66.52  Aligned_cols=35  Identities=20%  Similarity=0.394  Sum_probs=26.7

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEE
Q psy7366         371 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV  405 (566)
Q Consensus       371 ~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~  405 (566)
                      +|...+++|++|+|||||+|.|.|-.....|.|.-
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~  128 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSE  128 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTCCCC------
T ss_pred             cCCeEEEECCCCCCHHHHHHhhcchhhhhccCccc
Confidence            58899999999999999999999987777787753

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.93  E-value=0.00014  Score=65.15  Aligned_cols=27  Identities=30%  Similarity=0.397  Sum_probs=24.1

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHCCCCC
Q psy7366         372 GECFGLLGLNGAGKTTTFKMLTGAIKP  398 (566)
Q Consensus       372 Ge~~~l~G~NGsGKSTLl~~i~G~~~~  398 (566)
                      |.++.|+||+|||||||.+.|....+.
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~~~   28 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERIPN   28 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCCC
Confidence            789999999999999999999876653

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=7.7e-05  Score=65.92  Aligned_cols=34  Identities=24%  Similarity=0.178  Sum_probs=28.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN  407 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g  407 (566)
                      .+.|+||+|+|||||++.++..+....+.+.+.+
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~   36 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFY   36 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence            4789999999999999999999877666655444

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.82  E-value=0.00032  Score=61.46  Aligned_cols=36  Identities=22%  Similarity=0.218  Sum_probs=28.0

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCc
Q psy7366         371 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH  408 (566)
Q Consensus       371 ~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~  408 (566)
                      .|.++.|.||+||||||+.+.|+..+..  --+.+++.
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~lg~--~~~~~~~d   38 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLPGV--PKVHFHSD   38 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCSSS--CEEEECTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCC--CEEEecHH
Confidence            5889999999999999999999976532  13455553

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.79  E-value=0.00015  Score=63.62  Aligned_cols=26  Identities=23%  Similarity=0.359  Sum_probs=22.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHCCCCC
Q psy7366         373 ECFGLLGLNGAGKTTTFKMLTGAIKP  398 (566)
Q Consensus       373 e~~~l~G~NGsGKSTLl~~i~G~~~~  398 (566)
                      .+++|+|++|||||||++-|...++.
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~~   27 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAVR   27 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence            37899999999999999988776654

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.67  E-value=0.00039  Score=60.75  Aligned_cols=27  Identities=19%  Similarity=0.410  Sum_probs=24.1

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         370 GRGECFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       370 ~~Ge~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      +++.++.|+||+||||||+.+.|+..+
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l   30 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQL   30 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            467899999999999999999998754

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.65  E-value=0.00018  Score=66.79  Aligned_cols=35  Identities=11%  Similarity=0.229  Sum_probs=22.7

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEE
Q psy7366         371 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV  405 (566)
Q Consensus       371 ~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~  405 (566)
                      +|..++++|++|+|||||+|.|.|-.....|.|.-
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~  130 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISE  130 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred             ccceEEEECCCCccHHHHHHhhccHhHhhhccccc
Confidence            57889999999999999999999987777787763

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.57  E-value=0.0005  Score=60.16  Aligned_cols=27  Identities=22%  Similarity=0.256  Sum_probs=23.9

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         370 GRGECFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       370 ~~Ge~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      .+|-++.|+|++||||||+-+.|+-.+
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~L   30 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVTL   30 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            478899999999999999999998544

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=96.47  E-value=0.0007  Score=59.13  Aligned_cols=27  Identities=26%  Similarity=0.445  Sum_probs=23.8

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         370 GRGECFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       370 ~~Ge~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      ++|-.+.|+||+||||||+.+.|+-.+
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~l   29 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAEL   29 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence            467789999999999999999998654

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.44  E-value=0.00074  Score=61.64  Aligned_cols=27  Identities=22%  Similarity=0.346  Sum_probs=23.4

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHCCCC
Q psy7366         371 RGECFGLLGLNGAGKTTTFKMLTGAIK  397 (566)
Q Consensus       371 ~Ge~~~l~G~NGsGKSTLl~~i~G~~~  397 (566)
                      +|.++.|+||+|||||||.+.|.-..+
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~~~~p   27 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALLKTQP   27 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhhCC
Confidence            588999999999999999998875443

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.35  E-value=0.00076  Score=59.19  Aligned_cols=24  Identities=21%  Similarity=0.396  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         373 ECFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       373 e~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      ..++|+||.|||||||.+.|+..+
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~~   31 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAVF   31 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            368899999999999999999755

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=96.34  E-value=0.0083  Score=54.56  Aligned_cols=24  Identities=33%  Similarity=0.336  Sum_probs=15.5

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHC
Q psy7366         371 RGECFGLLGLNGAGKTTTFKMLTG  394 (566)
Q Consensus       371 ~Ge~~~l~G~NGsGKSTLl~~i~G  394 (566)
                      ...++.++||+|+||||.+-=|+-
T Consensus        11 ~p~vi~lvGptGvGKTTTiAKLA~   34 (211)
T d1j8yf2          11 IPYVIMLVGVQGTGKATTAGKLAY   34 (211)
T ss_dssp             SSEEEEEECSCCC----HHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999998765653

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.26  E-value=0.001  Score=56.74  Aligned_cols=33  Identities=18%  Similarity=0.231  Sum_probs=23.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCc
Q psy7366         373 ECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH  408 (566)
Q Consensus       373 e~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~  408 (566)
                      .++.|.||+|||||||.+.|..-   ..|.+.+...
T Consensus         3 klIii~G~pGsGKTTla~~L~~~---~~~~~~~~~d   35 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAK---NPGFYNINRD   35 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH---STTEEEECHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh---CCCCEEechH
Confidence            47889999999999999977532   2355555543

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.26  E-value=0.0011  Score=58.30  Aligned_cols=30  Identities=20%  Similarity=0.347  Sum_probs=24.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHCCCCCCccE
Q psy7366         373 ECFGLLGLNGAGKTTTFKMLTGAIKPTSGN  402 (566)
Q Consensus       373 e~~~l~G~NGsGKSTLl~~i~G~~~~~~G~  402 (566)
                      .+++|.|+.||||||+.+.|+-.+.....+
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~   31 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVN   31 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTTTCC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCC
Confidence            589999999999999999998665443333

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=96.25  E-value=0.0011  Score=57.63  Aligned_cols=26  Identities=23%  Similarity=0.258  Sum_probs=23.4

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHCCCC
Q psy7366         372 GECFGLLGLNGAGKTTTFKMLTGAIK  397 (566)
Q Consensus       372 Ge~~~l~G~NGsGKSTLl~~i~G~~~  397 (566)
                      ..++.|.|++||||||+.+.|+..+.
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~   28 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence            46899999999999999999998775

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.24  E-value=0.0044  Score=56.45  Aligned_cols=58  Identities=21%  Similarity=0.260  Sum_probs=37.5

Q ss_pred             CCCCEEEEeCCCCCC----CHH-HHHHHHHHHHHHHhCCcEEEEEccCHH---------HHHhhCCEEEEEE
Q psy7366         494 GNPPLIFLDEPTSGM----DPG-ARRFLWTCIERAVSEGRCVILTSHNME---------ECEALCTKLTIMV  551 (566)
Q Consensus       494 ~~p~lllLDEPt~gL----D~~-~~~~l~~~l~~~~~~g~tvl~vsHd~~---------~~~~~~drv~~l~  551 (566)
                      .+|+++++|--+.-.    +.. ..+.+..+++.+++.+.|+++++|...         ....++|.++.+.
T Consensus       124 ~~~~~viiD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~  195 (242)
T d1tf7a1         124 YRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR  195 (242)
T ss_dssp             HTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred             hccchhhhhHHHHHHHhccChhHHHHHHHHHHHHHHhcCCceEEeecccccccccccCcceeeeccEEEEEE
Confidence            478999999665432    223 333444444445556999999888543         3556789988775

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.23  E-value=0.001  Score=59.19  Aligned_cols=24  Identities=33%  Similarity=0.564  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAIK  397 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~~  397 (566)
                      ++||.||.|||||||.+.|.-.+.
T Consensus        24 iIgI~G~~GSGKSTla~~L~~~l~   47 (198)
T d1rz3a_          24 VLGIDGLSRSGKTTLANQLSQTLR   47 (198)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Confidence            799999999999999999985543

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=96.15  E-value=0.0012  Score=56.58  Aligned_cols=23  Identities=35%  Similarity=0.390  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      .+.|+||+||||||+-+.|+-.+
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L   26 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQL   26 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            36788999999999999998655

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.13  E-value=0.016  Score=50.66  Aligned_cols=24  Identities=29%  Similarity=0.331  Sum_probs=21.0

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHH
Q psy7366         370 GRGECFGLLGLNGAGKTTTFKMLT  393 (566)
Q Consensus       370 ~~Ge~~~l~G~NGsGKSTLl~~i~  393 (566)
                      ++-+++.++|+.||||||+.+-++
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~   35 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHL   35 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            456789999999999999998875

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=96.07  E-value=0.0014  Score=56.68  Aligned_cols=33  Identities=30%  Similarity=0.517  Sum_probs=25.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCc
Q psy7366         373 ECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH  408 (566)
Q Consensus       373 e~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~  408 (566)
                      .++.|.||.||||||+.+.|+..+.   +.+.+++.
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~d   35 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLD---NSAYIEGD   35 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSS---SEEEEEHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcC---CCEEEehH
Confidence            3688999999999999999997653   34555553

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.05  E-value=0.00093  Score=59.46  Aligned_cols=26  Identities=46%  Similarity=0.523  Sum_probs=23.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         371 RGECFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       371 ~Ge~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      +|-++.|+|+.||||||+-+.|+-.+
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l   43 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYL   43 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            57799999999999999999998544

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=95.99  E-value=0.0015  Score=56.69  Aligned_cols=21  Identities=43%  Similarity=0.390  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHCC
Q psy7366         375 FGLLGLNGAGKTTTFKMLTGA  395 (566)
Q Consensus       375 ~~l~G~NGsGKSTLl~~i~G~  395 (566)
                      ++|+||.||||||+.+.|+--
T Consensus         7 I~i~G~pGsGKTTia~~La~~   27 (173)
T d1rkba_           7 ILLTGTPGVGKTTLGKELASK   27 (173)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            679999999999999999743

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=95.97  E-value=0.018  Score=54.13  Aligned_cols=42  Identities=21%  Similarity=0.287  Sum_probs=29.6

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHH-CCCCCCccEEEEcCcc
Q psy7366         368 GVGRGECFGLLGLNGAGKTTTFKMLT-GAIKPTSGNAYVMNHS  409 (566)
Q Consensus       368 ~i~~Ge~~~l~G~NGsGKSTLl~~i~-G~~~~~~G~i~~~g~~  409 (566)
                      =+++|.++-|.||+|+|||||.-.++ ...++..--++++.+.
T Consensus        50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~   92 (263)
T d1u94a1          50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH   92 (263)
T ss_dssp             SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEcccc
Confidence            37899999999999999999975544 3334433335555554

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=95.95  E-value=0.0016  Score=58.35  Aligned_cols=23  Identities=22%  Similarity=0.280  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      .++|+|+.|+|||||++.|+|.-
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g~~   47 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLINRK   47 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred             EEEEECCCCCCHHHHHHHhcCCC
Confidence            49999999999999999999864

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=95.90  E-value=0.0018  Score=59.77  Aligned_cols=22  Identities=27%  Similarity=0.276  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGA  395 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~  395 (566)
                      +++|+|+.|||||||++.|...
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~   23 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRY   23 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Confidence            6899999999999999999743

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=95.83  E-value=0.0032  Score=55.59  Aligned_cols=23  Identities=22%  Similarity=0.361  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      .+||+|+.|+|||||++.|+|..
T Consensus        10 kV~iiG~~~~GKSTLin~l~~~~   32 (186)
T d1mkya2          10 KVAIVGRPNVGKSTLFNAILNKE   32 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTST
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            58999999999999999999853

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.81  E-value=0.002  Score=57.52  Aligned_cols=22  Identities=32%  Similarity=0.436  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHCCC
Q psy7366         375 FGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       375 ~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      +.|+||+|||||||.+.|+...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~   25 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            6799999999999999987544

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.77  E-value=0.0022  Score=58.28  Aligned_cols=23  Identities=17%  Similarity=0.345  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      ++||.|+.|||||||.+.|+-.+
T Consensus         4 iIgI~G~~gSGKSTla~~L~~~l   26 (213)
T d1uj2a_           4 LIGVSGGTASGKSSVCAKIVQLL   26 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999987654

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=95.74  E-value=0.0025  Score=55.62  Aligned_cols=23  Identities=26%  Similarity=0.336  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      .++|+|+.|+|||||++.|+|..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~   24 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999999854

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.69  E-value=0.007  Score=57.12  Aligned_cols=23  Identities=26%  Similarity=0.274  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      -+.|.||.|+|||+|.+.+++.+
T Consensus        43 giLL~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3          43 GVLFYGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             EEEEBCCTTSSHHHHHHHHHHHT
T ss_pred             eEEEECCCCCcchhHHHHHHHHh
Confidence            36699999999999999999876

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.65  E-value=0.0023  Score=56.30  Aligned_cols=23  Identities=30%  Similarity=0.333  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      -++|+|+.|+|||||++.|.|..
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~   24 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKK   24 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            37899999999999999999853

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.59  E-value=0.0027  Score=56.86  Aligned_cols=21  Identities=43%  Similarity=0.477  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHCC
Q psy7366         375 FGLLGLNGAGKTTTFKMLTGA  395 (566)
Q Consensus       375 ~~l~G~NGsGKSTLl~~i~G~  395 (566)
                      +.|+||+|||||||.+.|+-.
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~   23 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQE   23 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            569999999999999998653

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.58  E-value=0.0032  Score=55.81  Aligned_cols=23  Identities=26%  Similarity=0.403  Sum_probs=20.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHCC
Q psy7366         373 ECFGLLGLNGAGKTTTFKMLTGA  395 (566)
Q Consensus       373 e~~~l~G~NGsGKSTLl~~i~G~  395 (566)
                      ..+.|+||+|+|||||++.|...
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHh
Confidence            46889999999999999988753

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.54  E-value=0.0032  Score=55.14  Aligned_cols=22  Identities=27%  Similarity=0.490  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGA  395 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~  395 (566)
                      +|+|+|..|+|||||++.|.|.
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4889999999999999999985

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=95.53  E-value=0.035  Score=50.18  Aligned_cols=25  Identities=36%  Similarity=0.465  Sum_probs=19.8

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         372 GECFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       372 Ge~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      -.+++++||+|+||||.+-=|+-.+
T Consensus         9 p~vi~lvGptGvGKTTTiAKLA~~~   33 (211)
T d2qy9a2           9 PFVILMVGVNGVGKTTTIGKLARQF   33 (211)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHH
Confidence            3589999999999999886566443

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.52  E-value=0.0024  Score=55.83  Aligned_cols=23  Identities=43%  Similarity=0.572  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      .++|+|++|||||||++.+.+-.
T Consensus        15 kI~lvG~~~vGKTsLl~~l~~~~   37 (186)
T d1f6ba_          15 KLVFLGLDNAGKTTLLHMLKDDR   37 (186)
T ss_dssp             EEEEEEETTSSHHHHHHHHSCC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999998864

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=95.52  E-value=0.0018  Score=57.32  Aligned_cols=21  Identities=33%  Similarity=0.683  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHCC
Q psy7366         375 FGLLGLNGAGKTTTFKMLTGA  395 (566)
Q Consensus       375 ~~l~G~NGsGKSTLl~~i~G~  395 (566)
                      +||+|+.++|||||++.|+|.
T Consensus         4 VaiiG~~nvGKSSLin~L~~~   24 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVSSA   24 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSEEE
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            799999999999999999874

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=95.51  E-value=0.0031  Score=54.77  Aligned_cols=22  Identities=27%  Similarity=0.528  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHCCC
Q psy7366         375 FGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       375 ~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      +.|+|+.||||||+.+.|+-.+
T Consensus         3 I~liG~~GsGKsTi~k~La~~l   24 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDL   24 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6789999999999999998654

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.50  E-value=0.0034  Score=55.18  Aligned_cols=23  Identities=26%  Similarity=0.420  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      +++|+|+.|+|||||++.|+|..
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~~   29 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGVK   29 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            79999999999999999999863

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=95.47  E-value=0.047  Score=51.26  Aligned_cols=28  Identities=25%  Similarity=0.343  Sum_probs=24.3

Q ss_pred             EeCCcEEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         369 VGRGECFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       369 i~~Ge~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      |+.|.++-|.||+|||||||.-.++...
T Consensus        54 ip~g~itei~G~~~sGKT~l~l~~~~~a   81 (268)
T d1xp8a1          54 IPRGRITEIYGPESGGKTTLALAIVAQA   81 (268)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             ccCceEEEEecCCccchHHHHHHHHHHH
Confidence            6899999999999999999987766543

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=95.46  E-value=0.0034  Score=55.16  Aligned_cols=24  Identities=21%  Similarity=0.314  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAIK  397 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~~  397 (566)
                      ++.|.|++||||||+.+.|+..+.
T Consensus         3 iivi~G~~GsGKTT~~~~La~~L~   26 (194)
T d1nksa_           3 IGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            678899999999999999987664

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=95.45  E-value=0.0036  Score=55.82  Aligned_cols=25  Identities=24%  Similarity=0.282  Sum_probs=21.5

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHCC
Q psy7366         371 RGECFGLLGLNGAGKTTTFKMLTGA  395 (566)
Q Consensus       371 ~Ge~~~l~G~NGsGKSTLl~~i~G~  395 (566)
                      +..++.|+||.||||||+.+.|+--
T Consensus         5 kp~iI~i~G~pGSGKsT~a~~La~~   29 (194)
T d1qf9a_           5 KPNVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3458899999999999999999853

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.45  E-value=0.003  Score=53.78  Aligned_cols=23  Identities=43%  Similarity=0.560  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      .++|+|++|+|||||++.+.+-.
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~   24 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDR   24 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            46799999999999999999753

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.31  E-value=0.0051  Score=54.85  Aligned_cols=26  Identities=23%  Similarity=0.285  Sum_probs=23.6

Q ss_pred             EeCCcEEEEEcCCCCcHHHHHHHHHC
Q psy7366         369 VGRGECFGLLGLNGAGKTTTFKMLTG  394 (566)
Q Consensus       369 i~~Ge~~~l~G~NGsGKSTLl~~i~G  394 (566)
                      +++|+++.|.||+|+|||||.--++.
T Consensus        20 i~~G~v~~i~G~~GsGKT~l~l~la~   45 (242)
T d1n0wa_          20 IETGSITEMFGEFRTGKTQICHTLAV   45 (242)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence            79999999999999999999876664

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=95.30  E-value=0.0045  Score=53.10  Aligned_cols=24  Identities=25%  Similarity=0.299  Sum_probs=21.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         373 ECFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       373 e~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      =.++|+|+.|+|||||++.|+|..
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~   25 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGRE   25 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            358899999999999999999864

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.28  E-value=0.18  Score=47.10  Aligned_cols=23  Identities=22%  Similarity=0.173  Sum_probs=20.1

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHC
Q psy7366         372 GECFGLLGLNGAGKTTTFKMLTG  394 (566)
Q Consensus       372 Ge~~~l~G~NGsGKSTLl~~i~G  394 (566)
                      ..+++|.|.-|.|||||.+.+..
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~   66 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALS   66 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            34899999999999999998863

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.23  E-value=0.0029  Score=55.68  Aligned_cols=22  Identities=36%  Similarity=0.575  Sum_probs=20.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHCCC
Q psy7366         375 FGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       375 ~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      +||+|..|+|||||++.|+|..
T Consensus         4 VaivG~~nvGKSTLin~L~~~~   25 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRAH   25 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSSC
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7999999999999999999864

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=95.22  E-value=0.0037  Score=60.98  Aligned_cols=37  Identities=24%  Similarity=0.252  Sum_probs=29.3

Q ss_pred             EeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEE
Q psy7366         369 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV  405 (566)
Q Consensus       369 i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~  405 (566)
                      +..|.-+.|.|+-|||||||++.|++.++|+.=-|++
T Consensus       163 v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti  199 (323)
T d1g6oa_         163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI  199 (323)
T ss_dssp             HHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred             HHhCCCEEEEeeccccchHHHHHHhhhcccccceeec
Confidence            3455567899999999999999999999876544444

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=95.20  E-value=0.0041  Score=52.95  Aligned_cols=23  Identities=35%  Similarity=0.362  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      .+.|+|+.|+|||||++.+.+-.
T Consensus         2 kivlvG~~~vGKSsLi~~l~~~~   24 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKLGE   24 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            36799999999999999987543

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.20  E-value=0.0037  Score=55.88  Aligned_cols=28  Identities=18%  Similarity=0.278  Sum_probs=24.1

Q ss_pred             EeCCcEEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         369 VGRGECFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       369 i~~Ge~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      +.++.++.|+||.||||||+.+.|+--+
T Consensus         5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~   32 (194)
T d3adka_           5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY   32 (194)
T ss_dssp             HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            3567899999999999999999998643

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=95.20  E-value=0.0044  Score=55.13  Aligned_cols=21  Identities=33%  Similarity=0.550  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTG  394 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G  394 (566)
                      ++||+|+.||||||+.+.|.-
T Consensus         5 IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           5 IIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            789999999999999999863

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=95.18  E-value=0.0045  Score=54.04  Aligned_cols=22  Identities=32%  Similarity=0.421  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHCCC
Q psy7366         375 FGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       375 ~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      +.|+|+.||||||+-+.|+-.+
T Consensus         5 Iil~G~~GsGKSTia~~LA~~L   26 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELARAL   26 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            5689999999999999998433

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.17  E-value=0.0047  Score=55.13  Aligned_cols=31  Identities=26%  Similarity=0.179  Sum_probs=24.9

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEc
Q psy7366         372 GECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM  406 (566)
Q Consensus       372 Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~  406 (566)
                      -.++.|+||.||||||+.+.|+--+    |-+.++
T Consensus         8 ~~iI~i~GppGSGKsT~a~~La~~~----g~~~is   38 (196)
T d1ukza_           8 VSVIFVLGGPGAGKGTQCEKLVKDY----SFVHLS   38 (196)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHS----SCEEEE
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh----CCeEEe
Confidence            4479999999999999999998755    445554

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=95.15  E-value=0.0043  Score=53.20  Aligned_cols=23  Identities=43%  Similarity=0.492  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      .++|+|..|+|||||++.+.+-.
T Consensus         7 kI~ivG~~~vGKSSLi~~~~~~~   29 (169)
T d1upta_           7 RILILGLDGAGKTTILYRLQVGE   29 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            37899999999999999987653

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=95.13  E-value=0.0056  Score=54.35  Aligned_cols=25  Identities=40%  Similarity=0.385  Sum_probs=22.3

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHHC
Q psy7366         370 GRGECFGLLGLNGAGKTTTFKMLTG  394 (566)
Q Consensus       370 ~~Ge~~~l~G~NGsGKSTLl~~i~G  394 (566)
                      ++|-.+.|+||.||||||+-+.|+-
T Consensus         1 p~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           1 PKGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHH
Confidence            4677888999999999999999993

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.13  E-value=0.0043  Score=55.70  Aligned_cols=23  Identities=26%  Similarity=0.369  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      .++|+|+.|||||||++.|.|-.
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~~   27 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTDS   27 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            67899999999999999998753

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.02  E-value=0.0053  Score=53.27  Aligned_cols=22  Identities=41%  Similarity=0.536  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHCCC
Q psy7366         375 FGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       375 ~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      +.|+|+.||||||+-+.|+-.+
T Consensus         4 IvliG~~G~GKSTig~~La~~l   25 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKAL   25 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            5588999999999999998654

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.98  E-value=0.0043  Score=55.33  Aligned_cols=24  Identities=25%  Similarity=0.151  Sum_probs=21.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         373 ECFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       373 e~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      -+++|-|+.||||||+++.|...+
T Consensus        10 ~~I~ieG~~GsGKTTl~~~L~~~l   33 (197)
T d2vp4a1          10 FTVLIEGNIGSGKTTYLNHFEKYK   33 (197)
T ss_dssp             EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            489999999999999999998765

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=94.93  E-value=0.0064  Score=55.23  Aligned_cols=41  Identities=24%  Similarity=0.216  Sum_probs=30.2

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHHCCCCC--CccEEEEcCccC
Q psy7366         370 GRGECFGLLGLNGAGKTTTFKMLTGAIKP--TSGNAYVMNHSI  410 (566)
Q Consensus       370 ~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~  410 (566)
                      .+|-++.|+|.+|||||||.+.|.-.+..  ..-.+.++|..+
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~i   64 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI   64 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHH
Confidence            56778999999999999999998743321  123467887654

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=94.93  E-value=0.0049  Score=54.73  Aligned_cols=22  Identities=18%  Similarity=0.250  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGA  395 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~  395 (566)
                      ++.|+||.||||||+.+.|+--
T Consensus         5 ~I~i~GppGsGKsT~a~~La~~   26 (189)
T d1zaka1           5 KVMISGAPASGKGTQCELIKTK   26 (189)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4679999999999999999743

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=94.91  E-value=0.008  Score=51.79  Aligned_cols=23  Identities=43%  Similarity=0.596  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~~~   26 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNGED   26 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCC
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC
Confidence            47899999999999999999864

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.88  E-value=0.0065  Score=53.98  Aligned_cols=22  Identities=32%  Similarity=0.318  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGA  395 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~  395 (566)
                      ++.|+||.||||||..+.|+--
T Consensus         3 iI~i~GppGSGKsT~a~~La~~   24 (194)
T d1teva_           3 VVFVLGGPGAGKGTQCARIVEK   24 (194)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6889999999999999999853

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.86  E-value=0.0069  Score=55.01  Aligned_cols=28  Identities=36%  Similarity=0.449  Sum_probs=24.3

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHHCCCC
Q psy7366         370 GRGECFGLLGLNGAGKTTTFKMLTGAIK  397 (566)
Q Consensus       370 ~~Ge~~~l~G~NGsGKSTLl~~i~G~~~  397 (566)
                      ++|-+++|-|+-||||||+.+.|...+.
T Consensus         1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~   28 (209)
T d1nn5a_           1 RRGALIVLEGVDRAGKSTQSRKLVEALC   28 (209)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4788999999999999999999877554

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=94.84  E-value=0.0038  Score=54.67  Aligned_cols=23  Identities=26%  Similarity=0.388  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      .++|+|+.++|||||++.|.|..
T Consensus        18 ~I~lvG~~NvGKSSL~n~L~~~~   40 (188)
T d1puia_          18 EVAFAGRSNAGKSSALNTLTNQK   40 (188)
T ss_dssp             EEEEEECTTSSHHHHHTTTCCC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            48999999999999999998864

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=94.82  E-value=0.0073  Score=54.55  Aligned_cols=26  Identities=35%  Similarity=0.552  Sum_probs=23.3

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         371 RGECFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       371 ~Ge~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      +|.+++|-|+-||||||+.+.|...+
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L   26 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETL   26 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            58899999999999999999998654

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.81  E-value=0.007  Score=53.01  Aligned_cols=23  Identities=39%  Similarity=0.524  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      .+.|+||.||||||+.+.|+--+
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            36799999999999999996543

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.69  E-value=0.0078  Score=53.85  Aligned_cols=23  Identities=35%  Similarity=0.368  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      ++.++|+.|||||||.+.|+..+
T Consensus         4 li~l~GlpgsGKSTla~~L~~~l   26 (213)
T d1bifa1           4 LIVMVGLPARGKTYISKKLTRYL   26 (213)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            68899999999999999998544

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=94.66  E-value=0.0075  Score=54.45  Aligned_cols=21  Identities=43%  Similarity=0.564  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTG  394 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G  394 (566)
                      ++||+|+.||||||+.+++.-
T Consensus         4 iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           4 IVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            789999999999999999863

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=94.65  E-value=0.0041  Score=60.72  Aligned_cols=26  Identities=27%  Similarity=0.353  Sum_probs=22.1

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHCCCC
Q psy7366         372 GECFGLLGLNGAGKTTTFKMLTGAIK  397 (566)
Q Consensus       372 Ge~~~l~G~NGsGKSTLl~~i~G~~~  397 (566)
                      .-++||+||.|||||||++.|...+.
T Consensus        54 ~~~IgitG~pGaGKSTLi~~l~~~~~   79 (327)
T d2p67a1          54 TLRLGVTGTPGAGKSTFLEAFGMLLI   79 (327)
T ss_dssp             SEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             ceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            44899999999999999999985543

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.62  E-value=0.0058  Score=56.09  Aligned_cols=27  Identities=26%  Similarity=0.257  Sum_probs=24.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHCCCC
Q psy7366         371 RGECFGLLGLNGAGKTTTFKMLTGAIK  397 (566)
Q Consensus       371 ~Ge~~~l~G~NGsGKSTLl~~i~G~~~  397 (566)
                      ++.+++|-|+-||||||+++.|+..+.
T Consensus         1 ~~k~I~ieG~dGsGKST~~~~L~~~l~   27 (241)
T d1p5zb_           1 RIKKISIEGNIAAGKSTFVNILKQLCE   27 (241)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence            467899999999999999999998764

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.61  E-value=0.0065  Score=56.73  Aligned_cols=33  Identities=24%  Similarity=0.228  Sum_probs=25.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcC
Q psy7366         373 ECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN  407 (566)
Q Consensus       373 e~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g  407 (566)
                      ..+.|.||.|||||||.+.|++.+..  +-+.++.
T Consensus        33 ~~ilL~GpPGtGKT~la~~la~~~~~--~~~~i~~   65 (273)
T d1gvnb_          33 TAFLLGGQPGSGKTSLRSAIFEETQG--NVIVIDN   65 (273)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHHHTTT--CCEEECT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhhc--ceEEEec
Confidence            35779999999999999999987643  3445554

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=94.59  E-value=0.0087  Score=51.98  Aligned_cols=23  Identities=30%  Similarity=0.336  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      .++|+|..|||||||++.|.+-.
T Consensus        17 kI~vvG~~~~GKSsLi~rl~~~~   39 (177)
T d1zj6a1          17 KVIIVGLDNAGKTTILYQFSMNE   39 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999999853

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=94.55  E-value=0.0095  Score=53.98  Aligned_cols=26  Identities=38%  Similarity=0.557  Sum_probs=21.0

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         371 RGECFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       371 ~Ge~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      ++.+++++||+|+||||.+-=|+-.+
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~~   30 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRYY   30 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            56799999999999999875556433

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=94.50  E-value=0.0092  Score=52.49  Aligned_cols=23  Identities=35%  Similarity=0.436  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      .+.|+||.||||||+.+.|+--+
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47799999999999999998544

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=94.46  E-value=0.0084  Score=56.27  Aligned_cols=23  Identities=26%  Similarity=0.469  Sum_probs=21.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHCCCC
Q psy7366         375 FGLLGLNGAGKTTTFKMLTGAIK  397 (566)
Q Consensus       375 ~~l~G~NGsGKSTLl~~i~G~~~  397 (566)
                      ++|+|..|+|||||+|.|.|...
T Consensus        35 I~LvG~tg~GKSSliN~ilg~~~   57 (257)
T d1h65a_          35 ILVMGKGGVGKSSTVNSIIGERV   57 (257)
T ss_dssp             EEEEESTTSSHHHHHHHHHTSCC
T ss_pred             EEEECCCCCcHHHHHHHHhCCCc
Confidence            78999999999999999999653

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.45  E-value=0.01  Score=54.06  Aligned_cols=32  Identities=31%  Similarity=0.504  Sum_probs=26.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEE
Q psy7366         371 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA  403 (566)
Q Consensus       371 ~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i  403 (566)
                      +|.+++|-|+-||||||+.+.|+-.+.. .|.+
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~~-~~~~   33 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQP-NCKL   33 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTTT-SEEE
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHHh-CCEE
Confidence            7899999999999999999999876653 4443

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=94.42  E-value=0.0097  Score=53.68  Aligned_cols=30  Identities=33%  Similarity=0.397  Sum_probs=23.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCC---CCCccEE
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAI---KPTSGNA  403 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~---~~~~G~i  403 (566)
                      +++|.||.||||||+-+.|+--+   ..++|.+
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~gl~~iStGdL   37 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAI   37 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEECHHHH
Confidence            89999999999999999998443   3345544

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=94.40  E-value=0.0068  Score=58.46  Aligned_cols=24  Identities=25%  Similarity=0.408  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAIK  397 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~~  397 (566)
                      ++||.|++||||||+-+.|..++.
T Consensus        82 iIGIaG~sgSGKSTla~~L~~lL~  105 (308)
T d1sq5a_          82 IISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             EEEEeCCCCCCCcHHHHHHHHHHh
Confidence            889999999999999999987664

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=94.35  E-value=0.0098  Score=52.30  Aligned_cols=22  Identities=41%  Similarity=0.519  Sum_probs=20.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHCCC
Q psy7366         375 FGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       375 ~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      +||+|+-+||||||++.|+|..
T Consensus         8 IaiiG~~naGKSTL~n~L~~~~   29 (179)
T d1wb1a4           8 LGIFGHIDHGKTTLSKVLTEIA   29 (179)
T ss_dssp             EEEEECTTSSHHHHHHHHHTTC
T ss_pred             EEEEeCCCCcHHHHHHHHHHhc
Confidence            8999999999999999999753

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.25  E-value=0.0087  Score=53.75  Aligned_cols=22  Identities=32%  Similarity=0.386  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGA  395 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~  395 (566)
                      -++|+|+.|+|||||++.+.+-
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999999864

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.21  E-value=0.0035  Score=53.79  Aligned_cols=23  Identities=22%  Similarity=0.258  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      .++|+|+.|+|||||++.|+|..
T Consensus         2 kI~liG~~n~GKSSLin~l~g~~   24 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNED   24 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999853

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=94.20  E-value=0.011  Score=51.68  Aligned_cols=22  Identities=32%  Similarity=0.288  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGA  395 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~  395 (566)
                      .+.|+||.||||||..+.|+--
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~   23 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEK   23 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4679999999999999999843

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=94.18  E-value=0.011  Score=53.41  Aligned_cols=23  Identities=22%  Similarity=0.343  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      +++|-||.||||||+-+.|+--+
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~~l   27 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAKDF   27 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            57889999999999999998544

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=94.17  E-value=0.01  Score=51.11  Aligned_cols=21  Identities=33%  Similarity=0.493  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTG  394 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G  394 (566)
                      .++++|+.|+|||||++.+.+
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~   24 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIAS   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            367999999999999997764

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=94.14  E-value=0.012  Score=53.27  Aligned_cols=21  Identities=29%  Similarity=0.376  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTG  394 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G  394 (566)
                      ++||+|+.||||||..+++..
T Consensus         5 iIgitG~igSGKStv~~~l~~   25 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFAD   25 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHHHH
Confidence            789999999999999999863

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.10  E-value=0.011  Score=53.95  Aligned_cols=22  Identities=32%  Similarity=0.383  Sum_probs=19.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHCCC
Q psy7366         375 FGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       375 ~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      +.|.||+|+||||+.++|+..+
T Consensus        48 lll~Gp~G~GKTtla~~iak~l   69 (231)
T d1iqpa2          48 LLFAGPPGVGKTTAALALAREL   69 (231)
T ss_dssp             EEEESCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHH
Confidence            6799999999999999998754

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=94.05  E-value=0.011  Score=53.83  Aligned_cols=25  Identities=32%  Similarity=0.398  Sum_probs=19.9

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHHC
Q psy7366         370 GRGECFGLLGLNGAGKTTTFKMLTG  394 (566)
Q Consensus       370 ~~Ge~~~l~G~NGsGKSTLl~~i~G  394 (566)
                      .+..+++++||+|+||||.+-=|+-
T Consensus         9 ~~p~vi~lvGptGvGKTTTiAKLAa   33 (213)
T d1vmaa2           9 EPPFVIMVVGVNGTGKTTSCGKLAK   33 (213)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4556899999999999998755553

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.04  E-value=0.013  Score=51.28  Aligned_cols=23  Identities=39%  Similarity=0.377  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      .+.|+||.||||||+-+.|+--+
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~   24 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKL   24 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            36799999999999999997443

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=94.04  E-value=0.015  Score=50.20  Aligned_cols=29  Identities=31%  Similarity=0.219  Sum_probs=25.4

Q ss_pred             EeCCcEEEEEcCCCCcHHHHHHHHHCCCC
Q psy7366         369 VGRGECFGLLGLNGAGKTTTFKMLTGAIK  397 (566)
Q Consensus       369 i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~  397 (566)
                      .++|.+++|-|+=|||||||.|.++.-+-
T Consensus        30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~lg   58 (158)
T d1htwa_          30 TEKAIMVYLNGDLGAGKTTLTRGMLQGIG   58 (158)
T ss_dssp             CSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CCCCeEEEEecCCCccHHHHHHHHHhhcc
Confidence            46899999999999999999999985543

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=93.92  E-value=0.014  Score=52.79  Aligned_cols=26  Identities=38%  Similarity=0.409  Sum_probs=20.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         371 RGECFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       371 ~Ge~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      ...++.++||||+||||.+--|+-.+
T Consensus         9 ~~~vi~lvGp~GvGKTTTiaKLA~~~   34 (207)
T d1ls1a2           9 DRNLWFLVGLQGSGKTTTAAKLALYY   34 (207)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            35688999999999999887666443

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.84  E-value=0.015  Score=50.95  Aligned_cols=22  Identities=36%  Similarity=0.365  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGA  395 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~  395 (566)
                      .+.|+||.||||||+.+.|+--
T Consensus         4 rIvl~G~pGSGKtT~a~~La~~   25 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQER   25 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3668999999999999999854

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.81  E-value=0.016  Score=53.44  Aligned_cols=24  Identities=29%  Similarity=0.383  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAIK  397 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~~  397 (566)
                      .+.|.||+|+||||+.++|+..+.
T Consensus        54 ~lll~GPpG~GKTt~a~~la~~~~   77 (253)
T d1sxja2          54 AAMLYGPPGIGKTTAAHLVAQELG   77 (253)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHH
Confidence            467999999999999999998654

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.80  E-value=0.017  Score=52.63  Aligned_cols=25  Identities=28%  Similarity=0.337  Sum_probs=23.0

Q ss_pred             EeCCcEEEEEcCCCCcHHHHHHHHH
Q psy7366         369 VGRGECFGLLGLNGAGKTTTFKMLT  393 (566)
Q Consensus       369 i~~Ge~~~l~G~NGsGKSTLl~~i~  393 (566)
                      +++|.++-|.||.|||||||.--++
T Consensus        31 i~~G~~~li~G~pGsGKT~l~lq~~   55 (251)
T d1szpa2          31 VETGSITELFGEFRTGKSQLCHTLA   55 (251)
T ss_dssp             EESSSEEEEEESTTSSHHHHHHHHT
T ss_pred             CcCCeEEEEEcCCCCCHHHHHHHHH
Confidence            7999999999999999999987665

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=93.76  E-value=0.0089  Score=56.88  Aligned_cols=24  Identities=21%  Similarity=0.369  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAIK  397 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~~  397 (566)
                      ++||.|++||||||+.+.|.-.++
T Consensus         6 IIgIaG~SGSGKTTva~~l~~i~~   29 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQIFR   29 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHh
Confidence            899999999999999998876543

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.74  E-value=0.014  Score=53.22  Aligned_cols=22  Identities=36%  Similarity=0.493  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHCCC
Q psy7366         375 FGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       375 ~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      +.|.||+|+||||+.++++..+
T Consensus        36 lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHHHH
Confidence            6799999999999999998643

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=93.69  E-value=0.017  Score=51.35  Aligned_cols=23  Identities=26%  Similarity=0.364  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      .+.|+||.||||||+-+.|+--+
T Consensus         8 rIiliG~PGSGKtT~a~~La~~~   30 (189)
T d2ak3a1           8 RAAIMGAPGSGKGTVSSRITKHF   30 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHB
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999998643

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=93.67  E-value=0.015  Score=50.48  Aligned_cols=22  Identities=50%  Similarity=0.617  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGA  395 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~  395 (566)
                      .++++|+.|+|||||++.+.+-
T Consensus        18 kI~vvG~~~vGKSsLi~~l~~~   39 (176)
T d1fzqa_          18 RILLLGLDNAGKTTLLKQLASE   39 (176)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999774

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.65  E-value=0.015  Score=50.49  Aligned_cols=20  Identities=30%  Similarity=0.434  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHC
Q psy7366         375 FGLLGLNGAGKTTTFKMLTG  394 (566)
Q Consensus       375 ~~l~G~NGsGKSTLl~~i~G  394 (566)
                      ++|+|+.|+|||||++.+.+
T Consensus         5 i~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            78999999999999998875

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.52  E-value=0.033  Score=48.01  Aligned_cols=21  Identities=19%  Similarity=0.373  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTG  394 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G  394 (566)
                      .++|+|..|+|||||++-+.+
T Consensus         4 Ki~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           4 RVAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            378999999999999987775

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.47  E-value=0.016  Score=50.09  Aligned_cols=20  Identities=20%  Similarity=0.277  Sum_probs=18.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHC
Q psy7366         375 FGLLGLNGAGKTTTFKMLTG  394 (566)
Q Consensus       375 ~~l~G~NGsGKSTLl~~i~G  394 (566)
                      ++++|+.|+|||||++.+.+
T Consensus         8 i~vvG~~~vGKTsLi~~l~~   27 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYAD   27 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            78999999999999997764

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.45  E-value=0.02  Score=57.19  Aligned_cols=22  Identities=27%  Similarity=0.456  Sum_probs=20.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHCCC
Q psy7366         375 FGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       375 ~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      ++|+|..|+|||||+|.|.|..
T Consensus        59 Iai~G~~n~GKSSLiNaL~G~~   80 (400)
T d1tq4a_          59 VAVTGETGSGKSSFINTLRGIG   80 (400)
T ss_dssp             EEEEECTTSSHHHHHHHHHTCC
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7999999999999999999964

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=93.42  E-value=0.02  Score=53.06  Aligned_cols=23  Identities=26%  Similarity=0.333  Sum_probs=19.9

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHC
Q psy7366         372 GECFGLLGLNGAGKTTTFKMLTG  394 (566)
Q Consensus       372 Ge~~~l~G~NGsGKSTLl~~i~G  394 (566)
                      +.++.|.||.|+|||||++.++-
T Consensus        29 ~~~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          29 APITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Confidence            45788999999999999998764

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.42  E-value=0.019  Score=51.23  Aligned_cols=23  Identities=39%  Similarity=0.664  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      +++|-|+-||||||+++.|...+
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l   24 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAF   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            58899999999999999998654

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.37  E-value=0.017  Score=50.24  Aligned_cols=20  Identities=30%  Similarity=0.471  Sum_probs=18.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHC
Q psy7366         375 FGLLGLNGAGKTTTFKMLTG  394 (566)
Q Consensus       375 ~~l~G~NGsGKSTLl~~i~G  394 (566)
                      ++++|+.|+|||||++.+.+
T Consensus         7 i~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           7 VVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999997755

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=93.35  E-value=0.017  Score=52.91  Aligned_cols=22  Identities=32%  Similarity=0.486  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGA  395 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~  395 (566)
                      ++||+|..+||||||++.|.+.
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~~   28 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRGS   28 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCccHHHHHHHHHhh
Confidence            5999999999999999999874

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=93.35  E-value=0.019  Score=55.62  Aligned_cols=24  Identities=33%  Similarity=0.518  Sum_probs=21.0

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHCC
Q psy7366         372 GECFGLLGLNGAGKTTTFKMLTGA  395 (566)
Q Consensus       372 Ge~~~l~G~NGsGKSTLl~~i~G~  395 (566)
                      .-++||+||.|||||||+..+...
T Consensus        51 ~~~igitG~pGaGKSTli~~l~~~   74 (323)
T d2qm8a1          51 AIRVGITGVPGVGKSTTIDALGSL   74 (323)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             ceEEeeeCCCCCCHHHHHHHHHHH
Confidence            347999999999999999998854

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.31  E-value=0.023  Score=48.91  Aligned_cols=22  Identities=23%  Similarity=0.295  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGA  395 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~  395 (566)
                      .++|+|+.|+|||||++.+.+-
T Consensus         5 Ki~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3789999999999999887753

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=93.08  E-value=0.027  Score=51.14  Aligned_cols=25  Identities=20%  Similarity=0.283  Sum_probs=22.8

Q ss_pred             EeCCcEEEEEcCCCCcHHHHHHHHH
Q psy7366         369 VGRGECFGLLGLNGAGKTTTFKMLT  393 (566)
Q Consensus       369 i~~Ge~~~l~G~NGsGKSTLl~~i~  393 (566)
                      +++|+++.|.|+.|+|||||.--++
T Consensus        31 l~~G~l~~i~G~~G~GKT~~~l~~a   55 (258)
T d2i1qa2          31 LESQSVTEFAGVFGSGKTQIMHQSC   55 (258)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHH
T ss_pred             ccCCeEEEEEeCCCCCHHHHHHHHH
Confidence            7999999999999999999986665

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.00  E-value=0.026  Score=49.45  Aligned_cols=21  Identities=38%  Similarity=0.377  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHCC
Q psy7366         375 FGLLGLNGAGKTTTFKMLTGA  395 (566)
Q Consensus       375 ~~l~G~NGsGKSTLl~~i~G~  395 (566)
                      ++|+|+.|+|||||++.+.+-
T Consensus         8 i~ivG~~~vGKTsLi~~l~~~   28 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTDN   28 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            789999999999999988854

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.98  E-value=0.029  Score=51.42  Aligned_cols=24  Identities=25%  Similarity=0.306  Sum_probs=21.8

Q ss_pred             EeCCcEEEEEcCCCCcHHHHHHHH
Q psy7366         369 VGRGECFGLLGLNGAGKTTTFKML  392 (566)
Q Consensus       369 i~~Ge~~~l~G~NGsGKSTLl~~i  392 (566)
                      +++|.++.|.||.|||||||.--+
T Consensus        33 lp~G~~~li~G~pGsGKT~~~lq~   56 (254)
T d1pzna2          33 IETQAITEVFGEFGSGKTQLAHTL   56 (254)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHH
T ss_pred             ccCCEEEEEEcCCCCCHHHHHHHH
Confidence            799999999999999999997644

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=92.97  E-value=0.018  Score=52.66  Aligned_cols=34  Identities=21%  Similarity=0.254  Sum_probs=26.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccC
Q psy7366         375 FGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI  410 (566)
Q Consensus       375 ~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~  410 (566)
                      +.+.||.|+||||+.++|+..+....+  .+++...
T Consensus        38 ~L~~GPpGtGKT~lA~~la~~~~~~~~--~~~~~~~   71 (238)
T d1in4a2          38 VLLAGPPGLGKTTLAHIIASELQTNIH--VTSGPVL   71 (238)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHHTCCEE--EEETTTC
T ss_pred             EEEECCCCCcHHHHHHHHHhccCCCcc--cccCccc
Confidence            569999999999999999987765533  4455444

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.97  E-value=0.027  Score=48.35  Aligned_cols=21  Identities=24%  Similarity=0.360  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHCC
Q psy7366         375 FGLLGLNGAGKTTTFKMLTGA  395 (566)
Q Consensus       375 ~~l~G~NGsGKSTLl~~i~G~  395 (566)
                      ++++|.+|+|||||++.+.+-
T Consensus         5 i~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            779999999999999987653

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.86  E-value=0.027  Score=51.58  Aligned_cols=25  Identities=20%  Similarity=0.100  Sum_probs=23.0

Q ss_pred             EeCCcEEEEEcCCCCcHHHHHHHHH
Q psy7366         369 VGRGECFGLLGLNGAGKTTTFKMLT  393 (566)
Q Consensus       369 i~~Ge~~~l~G~NGsGKSTLl~~i~  393 (566)
                      |++|.++.|.||+|||||||.-.++
T Consensus        34 ip~G~~~~i~G~~GsGKT~lalq~~   58 (258)
T d1v5wa_          34 IESMAITEAFGEFRTGKTQLSHTLC   58 (258)
T ss_dssp             BCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred             CcCCEEEEEECCCCCCHHHHHHHHH
Confidence            7999999999999999999987665

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.83  E-value=0.028  Score=48.24  Aligned_cols=20  Identities=15%  Similarity=0.300  Sum_probs=17.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHC
Q psy7366         375 FGLLGLNGAGKTTTFKMLTG  394 (566)
Q Consensus       375 ~~l~G~NGsGKSTLl~~i~G  394 (566)
                      ++|+|+.|+|||||++-+.+
T Consensus         5 v~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            77999999999999986663

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.80  E-value=0.03  Score=48.34  Aligned_cols=24  Identities=29%  Similarity=0.432  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAIK  397 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~~  397 (566)
                      .++|+|..|+|||||++.+.+...
T Consensus         3 Ki~lvG~~~vGKTsLi~~~~~~~~   26 (168)
T d2gjsa1           3 KVLLLGAPGVGKSALARIFGGVED   26 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC--
T ss_pred             EEEEECCCCcCHHHHHHHHhCCcc
Confidence            378999999999999999988643

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=92.77  E-value=0.023  Score=53.87  Aligned_cols=30  Identities=27%  Similarity=0.323  Sum_probs=26.8

Q ss_pred             EEEeCCcEEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         367 FGVGRGECFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       367 l~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      +.|.+|+..+|+|+.|+|||||+..|+...
T Consensus        38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~~~   67 (289)
T d1xpua3          38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSI   67 (289)
T ss_dssp             SCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             ccccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence            468999999999999999999999988643

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.75  E-value=0.024  Score=49.13  Aligned_cols=21  Identities=24%  Similarity=0.455  Sum_probs=18.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHCC
Q psy7366         375 FGLLGLNGAGKTTTFKMLTGA  395 (566)
Q Consensus       375 ~~l~G~NGsGKSTLl~~i~G~  395 (566)
                      ++++|+.|+|||||++.+.+-
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            779999999999999987643

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.68  E-value=0.025  Score=48.70  Aligned_cols=21  Identities=19%  Similarity=0.324  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTG  394 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G  394 (566)
                      .++|+|+.|+|||||++.+.+
T Consensus         6 Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           6 KIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            588999999999999998764

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.67  E-value=0.038  Score=47.87  Aligned_cols=23  Identities=30%  Similarity=0.482  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      .+.|+|..|+|||||++.+.+..
T Consensus         5 Kv~lvG~~~vGKTsLi~~~~~~~   27 (172)
T d2g3ya1           5 RVVLIGEQGVGKSTLANIFAGVH   27 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCc
Confidence            37799999999999999998754

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=92.66  E-value=0.019  Score=50.26  Aligned_cols=22  Identities=45%  Similarity=0.537  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGA  395 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~  395 (566)
                      .++++|+.|+|||||++.+.+-
T Consensus        19 KI~lvG~~~vGKTsLi~~l~~~   40 (182)
T d1moza_          19 RILILGLDGAGKTTILYRLQIG   40 (182)
T ss_dssp             EEEEEEETTSSHHHHHHHTCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4779999999999999988654

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.57  E-value=0.03  Score=53.13  Aligned_cols=22  Identities=23%  Similarity=0.211  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGA  395 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~  395 (566)
                      ++||.|+.|||||||-+.|.-.
T Consensus        29 iIGi~G~qGSGKSTl~~~l~~~   50 (286)
T d1odfa_          29 FIFFSGPQGSGKSFTSIQIYNH   50 (286)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHH
Confidence            8999999999999999877533

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.55  E-value=0.027  Score=48.73  Aligned_cols=21  Identities=19%  Similarity=0.241  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTG  394 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G  394 (566)
                      .++|+|..|+|||||++-+.+
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            488999999999999987654

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=92.40  E-value=0.029  Score=53.92  Aligned_cols=34  Identities=21%  Similarity=0.179  Sum_probs=25.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCcc
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS  409 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~  409 (566)
                      -+.++||.|+|||+|.|+|+..+..  --+.+++..
T Consensus        51 ~iLl~GPpG~GKT~lAkalA~~~~~--~~~~i~~s~   84 (309)
T d1ofha_          51 NILMIGPTGVGKTEIARRLAKLANA--PFIKVEATK   84 (309)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHHTC--CEEEEEGGG
T ss_pred             eEEEECCCCCCHHHHHHHHhhcccc--chhcccccc
Confidence            4458999999999999999987532  245555544

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=92.40  E-value=0.026  Score=51.68  Aligned_cols=34  Identities=24%  Similarity=0.261  Sum_probs=24.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccC
Q psy7366         375 FGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI  410 (566)
Q Consensus       375 ~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~  410 (566)
                      +.+.||.|+||||+.+++++.+...  ...+++...
T Consensus        38 ~Ll~GPpG~GKTtla~~la~~~~~~--~~~~~~~~~   71 (239)
T d1ixsb2          38 LLLFGPPGLGKTTLAHVIAHELGVN--LRVTSGPAI   71 (239)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHTCC--EEEEETTTC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCC--eEeccCCcc
Confidence            4589999999999999999865432  344444443

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.37  E-value=0.036  Score=47.82  Aligned_cols=21  Identities=33%  Similarity=0.427  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTG  394 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G  394 (566)
                      .++|+|+.|+|||||++.+.+
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~   27 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQ   27 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999998875

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.33  E-value=0.03  Score=49.00  Aligned_cols=20  Identities=30%  Similarity=0.449  Sum_probs=17.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHC
Q psy7366         375 FGLLGLNGAGKTTTFKMLTG  394 (566)
Q Consensus       375 ~~l~G~NGsGKSTLl~~i~G  394 (566)
                      ++|+|..|+|||||++.+.+
T Consensus         5 v~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999987764

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.32  E-value=0.031  Score=48.05  Aligned_cols=22  Identities=23%  Similarity=0.282  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGA  395 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~  395 (566)
                      .++|+|..|+|||||++-+.+-
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999888653

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.31  E-value=0.029  Score=47.97  Aligned_cols=21  Identities=24%  Similarity=0.259  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTG  394 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G  394 (566)
                      .++|+|..|+|||||++.+.+
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998874

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.31  E-value=0.03  Score=48.08  Aligned_cols=20  Identities=25%  Similarity=0.469  Sum_probs=17.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHC
Q psy7366         375 FGLLGLNGAGKTTTFKMLTG  394 (566)
Q Consensus       375 ~~l~G~NGsGKSTLl~~i~G  394 (566)
                      ++|+|..|+|||||++.+.+
T Consensus         7 ivlvG~~~vGKTsli~~~~~   26 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTE   26 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999987764

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=92.23  E-value=0.038  Score=51.54  Aligned_cols=25  Identities=32%  Similarity=0.433  Sum_probs=21.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHCCCC
Q psy7366         373 ECFGLLGLNGAGKTTTFKMLTGAIK  397 (566)
Q Consensus       373 e~~~l~G~NGsGKSTLl~~i~G~~~  397 (566)
                      .-+.|.||.|+|||++.+.|+..+.
T Consensus        46 ~~iLL~GppGtGKT~la~~iA~~~~   70 (256)
T d1lv7a_          46 KGVLMVGPPGTGKTLLAKAIAGEAK   70 (256)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CeEEeeCCCCCCccHHHHHHHHHcC
Confidence            3467999999999999999997653

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.14  E-value=0.039  Score=47.40  Aligned_cols=20  Identities=30%  Similarity=0.430  Sum_probs=18.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHC
Q psy7366         375 FGLLGLNGAGKTTTFKMLTG  394 (566)
Q Consensus       375 ~~l~G~NGsGKSTLl~~i~G  394 (566)
                      ++|+|..|+|||||++-+..
T Consensus         7 i~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           7 VCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            77999999999999988764

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.13  E-value=0.032  Score=48.53  Aligned_cols=22  Identities=18%  Similarity=0.208  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGA  395 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~  395 (566)
                      .+.|+|.+|+|||||++.+.+-
T Consensus         4 KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4679999999999999887643

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=92.03  E-value=0.034  Score=51.21  Aligned_cols=29  Identities=34%  Similarity=0.363  Sum_probs=23.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHCCCCCCcc
Q psy7366         373 ECFGLLGLNGAGKTTTFKMLTGAIKPTSG  401 (566)
Q Consensus       373 e~~~l~G~NGsGKSTLl~~i~G~~~~~~G  401 (566)
                      ..+.|.||.|+||||+++.|+..++...+
T Consensus        44 ~~lll~GppGtGKT~l~~~l~~~l~~~~~   72 (276)
T d1fnna2          44 PRATLLGRPGTGKTVTLRKLWELYKDKTT   72 (276)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTTSCC
T ss_pred             CceEEECCCCCCHHHHHHHHHHHHhcccC
Confidence            36779999999999999999987654333

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.02  E-value=0.035  Score=47.45  Aligned_cols=20  Identities=20%  Similarity=0.195  Sum_probs=17.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHC
Q psy7366         375 FGLLGLNGAGKTTTFKMLTG  394 (566)
Q Consensus       375 ~~l~G~NGsGKSTLl~~i~G  394 (566)
                      ++|+|..|+|||||++.+.+
T Consensus         5 v~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            77999999999999987764

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.01  E-value=0.032  Score=51.27  Aligned_cols=42  Identities=17%  Similarity=0.263  Sum_probs=30.8

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHH
Q psy7366         495 NPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME  538 (566)
Q Consensus       495 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~  538 (566)
                      +..++|+||.-. |.......+.+.+.+.. ....+|++|++.+
T Consensus       131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~-~~~~~Il~tn~~~  172 (252)
T d1sxje2         131 RYKCVIINEANS-LTKDAQAALRRTMEKYS-KNIRLIMVCDSMS  172 (252)
T ss_dssp             CCEEEEEECTTS-SCHHHHHHHHHHHHHST-TTEEEEEEESCSC
T ss_pred             CceEEEeccccc-cccccchhhhccccccc-ccccceeeecccc
Confidence            556999999864 78888877777776542 2456788988875

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.00  E-value=0.034  Score=48.32  Aligned_cols=20  Identities=25%  Similarity=0.466  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHC
Q psy7366         375 FGLLGLNGAGKTTTFKMLTG  394 (566)
Q Consensus       375 ~~l~G~NGsGKSTLl~~i~G  394 (566)
                      ++++|..|+|||||++.+.+
T Consensus        10 i~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            77999999999999998875

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=91.96  E-value=0.027  Score=48.79  Aligned_cols=24  Identities=38%  Similarity=0.390  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAIK  397 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~~  397 (566)
                      .+.++|+.|+|||||++.+.+-..
T Consensus        14 kIvlvG~~~vGKTSli~rl~~~~~   37 (173)
T d1e0sa_          14 RILMLGLDAAGKTTILYKLKLGQS   37 (173)
T ss_dssp             EEEEEEETTSSHHHHHHHTTCCCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            467999999999999999986543

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.94  E-value=0.037  Score=50.15  Aligned_cols=22  Identities=32%  Similarity=0.519  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHCCC
Q psy7366         375 FGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       375 ~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      +.|.||.|+||||+.++++..+
T Consensus        39 ~ll~Gp~G~GKTt~a~~la~~l   60 (224)
T d1sxjb2          39 MIISGMPGIGKTTSVHCLAHEL   60 (224)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCchhhHHHHHHHH
Confidence            5689999999999999998543

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.91  E-value=0.047  Score=47.17  Aligned_cols=20  Identities=30%  Similarity=0.408  Sum_probs=17.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHC
Q psy7366         375 FGLLGLNGAGKTTTFKMLTG  394 (566)
Q Consensus       375 ~~l~G~NGsGKSTLl~~i~G  394 (566)
                      ++|+|+.|+|||||++-+..
T Consensus         9 I~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            77999999999999976653

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.87  E-value=0.037  Score=47.53  Aligned_cols=20  Identities=30%  Similarity=0.245  Sum_probs=17.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHC
Q psy7366         375 FGLLGLNGAGKTTTFKMLTG  394 (566)
Q Consensus       375 ~~l~G~NGsGKSTLl~~i~G  394 (566)
                      +.|+|..|+|||||++-+.+
T Consensus         6 ivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           6 VVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            67999999999999997764

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.83  E-value=0.077  Score=45.53  Aligned_cols=20  Identities=20%  Similarity=0.418  Sum_probs=18.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHC
Q psy7366         375 FGLLGLNGAGKTTTFKMLTG  394 (566)
Q Consensus       375 ~~l~G~NGsGKSTLl~~i~G  394 (566)
                      ++|+|+.|+|||||++-+.+
T Consensus         5 i~lvG~~~vGKTsli~r~~~   24 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLT   24 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78999999999999988774

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.67  E-value=0.039  Score=50.07  Aligned_cols=28  Identities=36%  Similarity=0.387  Sum_probs=22.7

Q ss_pred             EEEEEcCCCCcHHHHHHHH-HCCCCCCcc
Q psy7366         374 CFGLLGLNGAGKTTTFKML-TGAIKPTSG  401 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i-~G~~~~~~G  401 (566)
                      .+.|+|++|+|||||++-+ .+-..|+-|
T Consensus         8 KilllG~~~vGKTsll~~~~~~~~~pTiG   36 (221)
T d1azta2           8 RLLLLGAGESGKSTIVKQMRILHVVLTSG   36 (221)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCcCCCCC
Confidence            4679999999999999876 455667776

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=91.65  E-value=0.041  Score=51.00  Aligned_cols=21  Identities=24%  Similarity=0.162  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHCC
Q psy7366         375 FGLLGLNGAGKTTTFKMLTGA  395 (566)
Q Consensus       375 ~~l~G~NGsGKSTLl~~i~G~  395 (566)
                      +.|.||.|+|||+|.+.|+..
T Consensus        43 vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          43 VLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHhhc
Confidence            569999999999999999864

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.65  E-value=0.038  Score=48.90  Aligned_cols=20  Identities=25%  Similarity=0.449  Sum_probs=18.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHC
Q psy7366         375 FGLLGLNGAGKTTTFKMLTG  394 (566)
Q Consensus       375 ~~l~G~NGsGKSTLl~~i~G  394 (566)
                      ++|+|+.|+|||||++.+.+
T Consensus         9 ivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHhh
Confidence            78999999999999997764

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.59  E-value=0.041  Score=49.75  Aligned_cols=42  Identities=26%  Similarity=0.285  Sum_probs=27.8

Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHH
Q psy7366         496 PPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEE  539 (566)
Q Consensus       496 p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~  539 (566)
                      .+++++||. ..+....+..+...|.+... ...++++|++...
T Consensus       100 ~kiiiiDe~-d~~~~~~~~~Ll~~le~~~~-~~~~~~~~~~~~~  141 (227)
T d1sxjc2         100 FKLIILDEA-DAMTNAAQNALRRVIERYTK-NTRFCVLANYAHK  141 (227)
T ss_dssp             CEEEEETTG-GGSCHHHHHHHHHHHHHTTT-TEEEEEEESCGGG
T ss_pred             eEEEEEecc-ccchhhHHHHHHHHhhhccc-ceeeccccCcHHH
Confidence            468999986 46777777777777766432 3456666666543

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=91.56  E-value=0.091  Score=45.89  Aligned_cols=32  Identities=25%  Similarity=0.256  Sum_probs=24.5

Q ss_pred             eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHH
Q psy7366         361 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT  393 (566)
Q Consensus       361 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~  393 (566)
                      .++..-+.+ .|.-+.|.|++|+|||||.-.+.
T Consensus         5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~   36 (177)
T d1knxa2           5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLI   36 (177)
T ss_dssp             EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred             eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence            345444555 78889999999999999986665

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.51  E-value=0.041  Score=47.57  Aligned_cols=20  Identities=25%  Similarity=0.491  Sum_probs=18.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHC
Q psy7366         375 FGLLGLNGAGKTTTFKMLTG  394 (566)
Q Consensus       375 ~~l~G~NGsGKSTLl~~i~G  394 (566)
                      ++++|..|+|||||++-+.+
T Consensus         8 I~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998764

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.42  E-value=0.033  Score=48.16  Aligned_cols=22  Identities=36%  Similarity=0.339  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGA  395 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~  395 (566)
                      .++++|+.|+|||||++.+.+-
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~~   26 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLTG   26 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC--
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999977643

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.35  E-value=0.045  Score=47.09  Aligned_cols=21  Identities=24%  Similarity=0.302  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTG  394 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G  394 (566)
                      .++|+|..|+|||||++-+.+
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~   25 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVS   25 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999986654

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=91.34  E-value=0.05  Score=49.68  Aligned_cols=21  Identities=29%  Similarity=0.362  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTG  394 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G  394 (566)
                      ++||+|+-||||||..+.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999999954

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.31  E-value=0.045  Score=47.39  Aligned_cols=21  Identities=19%  Similarity=0.232  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTG  394 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G  394 (566)
                      .++|+|..|+|||||++-+.+
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999987664

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=91.29  E-value=0.04  Score=54.99  Aligned_cols=28  Identities=21%  Similarity=0.202  Sum_probs=23.7

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHHCCCC
Q psy7366         370 GRGECFGLLGLNGAGKTTTFKMLTGAIK  397 (566)
Q Consensus       370 ~~Ge~~~l~G~NGsGKSTLl~~i~G~~~  397 (566)
                      .++-++.+.||.||||||++..+...+.
T Consensus       156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~  183 (401)
T d1p9ra_         156 RPHGIILVTGPTGSGKSTTLYAGLQELN  183 (401)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             hhhceEEEEcCCCCCccHHHHHHhhhhc
Confidence            4556888999999999999999987654

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=91.07  E-value=0.062  Score=47.51  Aligned_cols=22  Identities=45%  Similarity=0.595  Sum_probs=20.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHCCC
Q psy7366         375 FGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       375 ~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      +||+|.-.+|||||++.|.|..
T Consensus         8 IaiiGhvd~GKSTL~~~L~g~~   29 (195)
T d1kk1a3           8 IGMVGHVDHGKTTLTKALTGVW   29 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHTCC
T ss_pred             EEEEeccCCcHHHHHHHHHhhh
Confidence            7899999999999999999864

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.05  E-value=0.048  Score=51.48  Aligned_cols=23  Identities=26%  Similarity=0.462  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      +++|+||-++||||||+.|.|..
T Consensus        34 vvsi~G~~~sGKS~llN~l~~~~   56 (277)
T d1f5na2          34 VVAIVGLYRTGKSYLMNKLAGKK   56 (277)
T ss_dssp             EEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC
Confidence            89999999999999999999865

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.94  E-value=0.051  Score=47.41  Aligned_cols=21  Identities=24%  Similarity=0.172  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTG  394 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G  394 (566)
                      .++|+|..|+|||||++-+.+
T Consensus         7 KivviG~~~vGKTsli~~~~~   27 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTT   27 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            488999999999999987664

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.85  E-value=0.068  Score=45.92  Aligned_cols=21  Identities=24%  Similarity=0.286  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTG  394 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G  394 (566)
                      .++++|..|+|||||++-+.+
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~   28 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            468999999999999988773

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=90.83  E-value=0.066  Score=54.01  Aligned_cols=35  Identities=20%  Similarity=0.200  Sum_probs=25.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI  410 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~  410 (566)
                      -+.++||.|||||-|.|.|++++...  -+..+....
T Consensus        51 NILliGPTGvGKTlLAr~LAk~l~VP--Fv~~daT~f   85 (443)
T d1g41a_          51 NILMIGPTGVGKTEIARRLAKLANAP--FIKVEATKF   85 (443)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHTTCC--EEEEEGGGG
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhCCC--EEEeeccee
Confidence            35599999999999999999977422  344554443

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.77  E-value=0.062  Score=46.79  Aligned_cols=30  Identities=27%  Similarity=0.286  Sum_probs=24.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCCCCCccEE
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAIKPTSGNA  403 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i  403 (566)
                      .+.|+|..|+|||||++-+.....|+.|-.
T Consensus         4 KivllG~~~vGKTsl~~r~~~~~~~t~~~~   33 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQMKIIHEAGTGIV   33 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHSCCCSEE
T ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCccEE
Confidence            468999999999999998876666777743

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.76  E-value=0.055  Score=46.53  Aligned_cols=20  Identities=30%  Similarity=0.400  Sum_probs=17.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHC
Q psy7366         375 FGLLGLNGAGKTTTFKMLTG  394 (566)
Q Consensus       375 ~~l~G~NGsGKSTLl~~i~G  394 (566)
                      ++|+|+.|+|||||++.+.+
T Consensus         9 i~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            88999999999999986543

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=90.75  E-value=0.058  Score=49.98  Aligned_cols=22  Identities=32%  Similarity=0.459  Sum_probs=19.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHCCC
Q psy7366         375 FGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       375 ~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      +.+.||.|+|||+|.+.|+...
T Consensus        45 iLl~GppGtGKT~la~aia~~~   66 (247)
T d1ixza_          45 VLLVGPPGVGKTHLARAVAGEA   66 (247)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEecCCCCChhHHHHHHHHHc
Confidence            5699999999999999999754

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.67  E-value=0.058  Score=46.46  Aligned_cols=21  Identities=19%  Similarity=0.213  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTG  394 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G  394 (566)
                      .+.++|..|+|||||++-+.+
T Consensus         6 Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           6 KLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            367999999999999997764

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=90.65  E-value=0.43  Score=43.81  Aligned_cols=47  Identities=15%  Similarity=0.139  Sum_probs=33.7

Q ss_pred             HHHhCCCCEEEeeCCCCC-----CCHHHHHHHHHHHHHHHh-CCCEEEEecCC
Q psy7366         103 IALLGNPPLIFLDEPTSG-----MDPGARRFLWTCIERAVS-EGRCVILTSHN  149 (566)
Q Consensus       103 ~al~~~p~vLlLDEPt~~-----LD~~~~~~l~~~l~~l~~-~g~tviiisH~  149 (566)
                      ..-..+|+++|+|--++-     =|......+...|+.+++ .|.+||++.|-
T Consensus       127 ~~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~  179 (274)
T d1nlfa_         127 KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHA  179 (274)
T ss_dssp             HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred             HHhccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCCCceehhhhc
Confidence            344579999999943321     266666777777777754 49999999994

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.60  E-value=0.063  Score=47.12  Aligned_cols=28  Identities=36%  Similarity=0.450  Sum_probs=22.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHC--CCCCCcc
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTG--AIKPTSG  401 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G--~~~~~~G  401 (566)
                      .+.|+|..|+|||||++-+.-  ...|+-|
T Consensus         4 KivllG~~~vGKTsll~r~~f~~~~~pTiG   33 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG   33 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCeee
Confidence            477999999999999998742  2357778

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.54  E-value=0.043  Score=47.48  Aligned_cols=20  Identities=30%  Similarity=0.436  Sum_probs=8.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHC
Q psy7366         375 FGLLGLNGAGKTTTFKMLTG  394 (566)
Q Consensus       375 ~~l~G~NGsGKSTLl~~i~G  394 (566)
                      ++|+|..|+|||||++.+.+
T Consensus         9 i~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEECCCCC-----------
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999987765

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.42  E-value=0.067  Score=48.70  Aligned_cols=25  Identities=28%  Similarity=0.327  Sum_probs=21.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHCCCC
Q psy7366         373 ECFGLLGLNGAGKTTTFKMLTGAIK  397 (566)
Q Consensus       373 e~~~l~G~NGsGKSTLl~~i~G~~~  397 (566)
                      .+++|=|+-||||||+++.|.-.+.
T Consensus         3 k~IviEG~~GsGKST~~~~L~~~l~   27 (241)
T d2ocpa1           3 RRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHHh
Confidence            3788999999999999999986553

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.40  E-value=0.07  Score=46.63  Aligned_cols=20  Identities=20%  Similarity=0.179  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q psy7366         374 CFGLLGLNGAGKTTTFKMLT  393 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~  393 (566)
                      .++|+|..|+|||||++.+.
T Consensus        11 Ki~lvG~~~vGKTsLi~r~~   30 (185)
T d2atxa1          11 KCVVVGDGAVGKTCLLMSYA   30 (185)
T ss_dssp             EEEEEECTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            37899999999999998765

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.37  E-value=0.063  Score=46.72  Aligned_cols=22  Identities=23%  Similarity=0.397  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGA  395 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~  395 (566)
                      .++++|..|+|||||++-+.+-
T Consensus         7 ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           7 RLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999966653

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=90.25  E-value=0.034  Score=53.79  Aligned_cols=25  Identities=24%  Similarity=0.397  Sum_probs=22.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCCCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAIKP  398 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~~~  398 (566)
                      -+.|.||.|+|||||.|.++++++|
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~iLp~   54 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAALLPE   54 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred             eEEEECCCCccHHHHHHHHHHhCCC
Confidence            3569999999999999999999876

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=90.18  E-value=0.066  Score=46.00  Aligned_cols=21  Identities=19%  Similarity=0.188  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTG  394 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G  394 (566)
                      .+.|+|..|+|||||++.+.+
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998653

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=90.15  E-value=0.045  Score=50.68  Aligned_cols=23  Identities=35%  Similarity=0.514  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      ++.|.||.|+||||+++.++..+
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHH
Confidence            45677999999999999998664

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=90.12  E-value=0.068  Score=51.20  Aligned_cols=63  Identities=17%  Similarity=0.182  Sum_probs=38.6

Q ss_pred             CcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHH
Q psy7366         474 EVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEEC  540 (566)
Q Consensus       474 ~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~  540 (566)
                      ....++.-+.+++.-..-+...|-++++-.    .|....+.+.++.+...+++..++.++...+..
T Consensus       194 ~~~~~~~~e~~~~~~~~~~~~kP~~~v~Nk----~d~~~~e~~~~~~~~~~~~~~~vi~~sa~~E~~  256 (319)
T d1wxqa1         194 DPTKWSQDDLLAFASEIRRVNKPMVIAANK----ADAASDEQIKRLVREEEKRGYIVIPTSAAAELT  256 (319)
T ss_dssp             CGGGCCHHHHHHHHHHHHHHHSCEEEEEEC----GGGSCHHHHHHHHHHHHHTTCEEEEECHHHHHH
T ss_pred             hhhhcCHHHHHHhHHHhhhhcCchhhhccc----ccchhhHHHHHHHHHHhhcCCEEEEecHHHHHH
Confidence            345567777888777777777887666432    122223444445555556677888777776544

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.05  E-value=0.071  Score=49.58  Aligned_cols=23  Identities=26%  Similarity=0.326  Sum_probs=20.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHCCCC
Q psy7366         375 FGLLGLNGAGKTTTFKMLTGAIK  397 (566)
Q Consensus       375 ~~l~G~NGsGKSTLl~~i~G~~~  397 (566)
                      +.|.||.|+|||+|.++++....
T Consensus        41 iLL~GppGtGKT~l~~ala~~~~   63 (258)
T d1e32a2          41 ILLYGPPGTGKTLIARAVANETG   63 (258)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTT
T ss_pred             eEEecCCCCCchHHHHHHHHHhC
Confidence            56999999999999999998643

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.00  E-value=0.082  Score=45.19  Aligned_cols=21  Identities=24%  Similarity=0.319  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTG  394 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G  394 (566)
                      .++|+|..|+|||||++-+.+
T Consensus         5 KivvvG~~~vGKTsli~r~~~   25 (167)
T d1c1ya_           5 KLVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            378999999999999987653

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.96  E-value=0.08  Score=46.07  Aligned_cols=20  Identities=20%  Similarity=0.333  Sum_probs=17.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q psy7366         374 CFGLLGLNGAGKTTTFKMLT  393 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~  393 (566)
                      .++++|..|+|||||++-+.
T Consensus         4 KivliG~~~vGKTsli~r~~   23 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFA   23 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHH
Confidence            46899999999999997554

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=89.92  E-value=0.074  Score=50.54  Aligned_cols=23  Identities=30%  Similarity=0.641  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      .+||+|...+|||||+++|++--
T Consensus        12 kiGivG~Pn~GKSTlfnalT~~~   34 (296)
T d1ni3a1          12 KTGIVGMPNVGKSTFFRAITKSV   34 (296)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHST
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            59999999999999999999763

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.48  E-value=0.077  Score=46.57  Aligned_cols=20  Identities=25%  Similarity=0.199  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q psy7366         374 CFGLLGLNGAGKTTTFKMLT  393 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~  393 (566)
                      .++|+|..|+|||||++.+.
T Consensus         5 KvvllG~~~vGKTSli~r~~   24 (191)
T d2ngra_           5 KCVVVGDGAVGKTCLLISYT   24 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHH
Confidence            47899999999999997665

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=89.42  E-value=0.15  Score=44.32  Aligned_cols=25  Identities=28%  Similarity=0.153  Sum_probs=20.3

Q ss_pred             EeCCcEEEEEcCCCCcHHHHHHHHH
Q psy7366         369 VGRGECFGLLGLNGAGKTTTFKMLT  393 (566)
Q Consensus       369 i~~Ge~~~l~G~NGsGKSTLl~~i~  393 (566)
                      .-.|.-+.|.|++|+|||||.-.+.
T Consensus        11 ~~~g~gvl~~G~sG~GKStlal~l~   35 (176)
T d1kkma_          11 DIYGLGVLITGDSGVGKSETALELV   35 (176)
T ss_dssp             EETTEEEEEECCTTSCHHHHHHHHH
T ss_pred             EECCEEEEEEeCCCCCHHHHHHHHH
Confidence            3467778899999999999876654

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.99  E-value=0.11  Score=48.79  Aligned_cols=30  Identities=30%  Similarity=0.407  Sum_probs=25.8

Q ss_pred             eeEEEeCCcEEEEEcCCCCcHHHHHHHHHC
Q psy7366         365 ISFGVGRGECFGLLGLNGAGKTTTFKMLTG  394 (566)
Q Consensus       365 isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G  394 (566)
                      .=+.+.+|+..+|+|+.|+|||||+..|+-
T Consensus        61 ~l~pigkGQr~~If~~~g~GKt~l~~~i~~   90 (276)
T d2jdid3          61 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN   90 (276)
T ss_dssp             HHSCEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred             eeccccCCCEEEeeCCCCCCHHHHHHHHHH
Confidence            345789999999999999999999777753

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.72  E-value=0.089  Score=47.73  Aligned_cols=22  Identities=36%  Similarity=0.448  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGA  395 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~  395 (566)
                      ++.|.|.=||||||||+-+...
T Consensus         5 v~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEEeeCCCCCHHHHHHHHHhc
Confidence            6789999999999999988764

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=88.60  E-value=0.13  Score=48.83  Aligned_cols=24  Identities=17%  Similarity=0.295  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAIK  397 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~~  397 (566)
                      .++++|.-.||||||+++|+|.--
T Consensus        26 ~ivVvG~~ssGKSSliNaLlG~~~   49 (306)
T d1jwyb_          26 QIVVVGSQSSGKSSVLENIVGRDF   49 (306)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSCC
T ss_pred             eEEEEeCCCCCHHHHHHHHhCCCC
Confidence            478999999999999999999763

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=88.60  E-value=0.16  Score=47.61  Aligned_cols=22  Identities=45%  Similarity=0.685  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGA  395 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~  395 (566)
                      .+||+|...+|||||++.|++.
T Consensus         4 ~~GivG~Pn~GKSTlf~~lt~~   25 (278)
T d1jala1           4 KCGIVGLPNVGKSTLFNALTKA   25 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHCC
Confidence            5899999999999999999965

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=88.37  E-value=0.72  Score=41.49  Aligned_cols=47  Identities=19%  Similarity=0.194  Sum_probs=36.7

Q ss_pred             CCCCEEEeeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEecCChhHH
Q psy7366         107 GNPPLIFLDEPTSGMDPGARRFLWT-CIERAVSEGRCVILTSHNMEEC  153 (566)
Q Consensus       107 ~~p~vLlLDEPt~~LD~~~~~~l~~-~l~~l~~~g~tviiisH~~~~~  153 (566)
                      .+..++|+||+..|=|+.....+.. ++..|.+.+..++++||..+..
T Consensus       113 ~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~  160 (224)
T d1ewqa2         113 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELT  160 (224)
T ss_dssp             CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHH
T ss_pred             CCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechhhh
Confidence            4556999999999999977665544 5555677788999999986543

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=88.28  E-value=0.2  Score=43.32  Aligned_cols=27  Identities=26%  Similarity=0.133  Sum_probs=21.0

Q ss_pred             EEEeCCcEEEEEcCCCCcHHHHHHHHH
Q psy7366         367 FGVGRGECFGLLGLNGAGKTTTFKMLT  393 (566)
Q Consensus       367 l~i~~Ge~~~l~G~NGsGKSTLl~~i~  393 (566)
                      +-.-.|.-+.|.|++|+|||||.-.+.
T Consensus        10 ~v~~~g~gvli~G~sg~GKS~la~~l~   36 (169)
T d1ko7a2          10 LVDVYGVGVLITGDSGIGKSETALELI   36 (169)
T ss_dssp             EEEETTEEEEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCEEEEEEeCCCCCHHHHHHHHH
Confidence            334567788999999999999875443

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=88.24  E-value=0.11  Score=48.57  Aligned_cols=20  Identities=40%  Similarity=0.542  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q psy7366         374 CFGLLGLNGAGKTTTFKMLT  393 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~  393 (566)
                      -++|+|+.|+|||||...|.
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll   23 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALL   23 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHH
Confidence            37899999999999999883

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.09  E-value=0.14  Score=48.37  Aligned_cols=23  Identities=22%  Similarity=0.384  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      .++++|.-.||||||+++|+|.-
T Consensus        28 ~ivvvG~~SsGKSsliNaLlg~~   50 (299)
T d2akab1          28 QIAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             eEEEEcCCCCCHHHHHHHHhCCC
Confidence            37799999999999999999975

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.02  E-value=0.083  Score=49.50  Aligned_cols=42  Identities=24%  Similarity=0.400  Sum_probs=28.7

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccE-EEEcCcc
Q psy7366         368 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN-AYVMNHS  409 (566)
Q Consensus       368 ~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~-i~~~g~~  409 (566)
                      -++.|.++-|.||+|+|||||.-.++.......|. |++|.+.
T Consensus        56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~   98 (269)
T d1mo6a1          56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH   98 (269)
T ss_dssp             SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCc
Confidence            36899999999999999999964444332222343 4555554

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=87.84  E-value=0.13  Score=49.15  Aligned_cols=32  Identities=25%  Similarity=0.180  Sum_probs=24.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN  407 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g  407 (566)
                      .+.++||.|+|||.|.+.|+-.+.  .--|.++-
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~~l~--~~~i~~d~   85 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSKALG--IELLRFDM   85 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT--CEEEEEEG
T ss_pred             EEEEECCCcchhHHHHHHHHhhcc--CCeeEecc
Confidence            577999999999999999998753  22455553

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=87.61  E-value=0.13  Score=45.81  Aligned_cols=19  Identities=42%  Similarity=0.469  Sum_probs=17.9

Q ss_pred             EEEEcCCCCcHHHHHHHHH
Q psy7366         375 FGLLGLNGAGKTTTFKMLT  393 (566)
Q Consensus       375 ~~l~G~NGsGKSTLl~~i~  393 (566)
                      +||+|.-++|||||++.|.
T Consensus         6 i~iiGhvd~GKSTL~~~Ll   24 (204)
T d2c78a3           6 VGTIGHVDHGKTTLTAALT   24 (204)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHH
Confidence            7899999999999999985

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=87.59  E-value=0.16  Score=45.09  Aligned_cols=24  Identities=33%  Similarity=0.487  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAIK  397 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~~  397 (566)
                      -+||+|.=.+|||||++.|.|...
T Consensus        10 ni~iiGhVd~GKSTL~~~L~~~~~   33 (205)
T d2qn6a3          10 NIGVVGHVDHGKTTLVQAITGIWT   33 (205)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred             EEEEEEccCCcHHHHHHHHHhhhc
Confidence            488999999999999999998654

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=87.53  E-value=0.13  Score=48.23  Aligned_cols=23  Identities=43%  Similarity=0.551  Sum_probs=19.8

Q ss_pred             EEEEcCCCCcHHHHHHHH---HCCCC
Q psy7366         375 FGLLGLNGAGKTTTFKML---TGAIK  397 (566)
Q Consensus       375 ~~l~G~NGsGKSTLl~~i---~G~~~  397 (566)
                      +||+|+.|||||||...|   +|...
T Consensus         9 i~i~gh~~~GKTtL~e~ll~~~g~~~   34 (276)
T d2bv3a2           9 IGIAAHIDAGKTTTTERILYYTGRIH   34 (276)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHTSSC
T ss_pred             EEEEeCCCCCHHHHHHHHHHhcCccc
Confidence            789999999999999888   46554

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.09  E-value=0.16  Score=44.16  Aligned_cols=28  Identities=36%  Similarity=0.393  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCC---CCCCcc
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGA---IKPTSG  401 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~---~~~~~G  401 (566)
                      .+.|+|..|+|||||++-+..-   +.|+-|
T Consensus         4 Kiv~lG~~~vGKTsll~r~~~~~~~~~pTiG   34 (200)
T d2bcjq2           4 KLLLLGTGESGKSTFIKQMRIIHGSGVPTTG   34 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTSSCCCCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCceee
Confidence            3679999999999999887533   345555

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=86.86  E-value=0.13  Score=50.25  Aligned_cols=40  Identities=23%  Similarity=0.126  Sum_probs=30.7

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEE-EcCccC
Q psy7366         368 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY-VMNHSI  410 (566)
Q Consensus       368 ~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~-~~g~~~  410 (566)
                      .++++.++.+.||.|+||||+.+.|++.+.   |.+. +++-+.
T Consensus       150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~---~~~i~in~s~~  190 (362)
T d1svma_         150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG---GKALNVNLPLD  190 (362)
T ss_dssp             CCTTCCEEEEECSTTSSHHHHHHHHHHHHC---CEEECCSSCTT
T ss_pred             CCCCcCeEEEECCCCCCHHHHHHHHHHHcC---CCEEEEECcch
Confidence            346778999999999999999999998875   4443 444433

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=86.42  E-value=0.13  Score=48.23  Aligned_cols=40  Identities=20%  Similarity=0.092  Sum_probs=29.3

Q ss_pred             eEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEE
Q psy7366         366 SFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV  405 (566)
Q Consensus       366 sl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~  405 (566)
                      =+.|.+|+.++|+|+.|+|||+|+..+.-...-+...+.+
T Consensus        61 l~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~~~~~~v~V~  100 (276)
T d1fx0a3          61 MIPVGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVY  100 (276)
T ss_dssp             TSCCBTTCBCBEEESSSSSHHHHHHHHHHTCCTTTCEEEE
T ss_pred             cccccCCceEeeccCCCCChHHHHHHHHhhhcccCceeee
Confidence            3578999999999999999999987654333434444333

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=86.09  E-value=0.19  Score=48.44  Aligned_cols=36  Identities=22%  Similarity=0.203  Sum_probs=27.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCcc
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS  409 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~  409 (566)
                      .|.|=|+=||||||+++.|.-.+......|.+-.++
T Consensus         7 rI~IEG~iGsGKSTl~~~L~~~l~~~g~~v~~~~EP   42 (331)
T d1osna_           7 RIYLDGAYGIGKTTAAEEFLHHFAITPNRILLIGEP   42 (331)
T ss_dssp             EEEEEESSSSCTTHHHHHHHHTTTTSGGGEEEECCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEeCc
Confidence            478999999999999999998776544455554444

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=85.70  E-value=0.27  Score=47.25  Aligned_cols=27  Identities=33%  Similarity=0.347  Sum_probs=23.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCCCCCc
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAIKPTS  400 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~~~~~  400 (566)
                      .|.|=|+=|+||||+++.|...+....
T Consensus         8 rI~iEG~iGsGKSTl~~~L~~~l~~~~   34 (333)
T d1p6xa_           8 RIYLDGVYGIGKSTTGRVMASAASGGS   34 (333)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSGGGCSS
T ss_pred             EEEEECCccCCHHHHHHHHHHHhccCC
Confidence            567889999999999999998776543

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=85.69  E-value=0.19  Score=45.08  Aligned_cols=44  Identities=14%  Similarity=0.134  Sum_probs=31.0

Q ss_pred             cCCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEEccC
Q psy7366         493 LGNPPLIFLDEPTS-GMDPGARRFLWTCIERAVSEGRCVILTSHN  536 (566)
Q Consensus       493 ~~~p~lllLDEPt~-gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd  536 (566)
                      ..+.++|++|+--. .-++..+..+..++..+.+.|+.+|++|..
T Consensus        95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~  139 (213)
T d1l8qa2          95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDR  139 (213)
T ss_dssp             HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             HhhccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCC
Confidence            34778888887633 224667777888888877777777777764

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=84.74  E-value=0.24  Score=44.16  Aligned_cols=44  Identities=11%  Similarity=0.210  Sum_probs=29.3

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHH
Q psy7366         495 NPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEEC  540 (566)
Q Consensus       495 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~  540 (566)
                      +.+++|+||. -.|...++..+++.|.+-. .+..+|++|++.+-+
T Consensus       108 ~~kviIide~-d~l~~~a~n~Llk~lEep~-~~~~fIl~t~~~~~l  151 (207)
T d1a5ta2         108 GAKVVWVTDA-ALLTDAAANALLKTLEEPP-AETWFFLATREPERL  151 (207)
T ss_dssp             SCEEEEESCG-GGBCHHHHHHHHHHHTSCC-TTEEEEEEESCGGGS
T ss_pred             ccceEEechh-hhhhhhhhHHHHHHHHhhc-ccceeeeeecChhhh
Confidence            4679999975 3455667777766665432 245678889987643

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=84.56  E-value=0.23  Score=45.12  Aligned_cols=43  Identities=14%  Similarity=0.147  Sum_probs=31.2

Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHH
Q psy7366         496 PPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEEC  540 (566)
Q Consensus       496 p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~  540 (566)
                      .+++|+||.-. |...++..+++.|.+.. .+..+|++|++.+-+
T Consensus       116 ~kviiIde~d~-l~~~~q~~Llk~lE~~~-~~~~~il~tn~~~~i  158 (239)
T d1njfa_         116 FKVYLIDEVHM-LSRHSFNALLKTLEEPP-EHVKFLLATTDPQKL  158 (239)
T ss_dssp             SEEEEEETGGG-SCHHHHHHHHHHHHSCC-TTEEEEEEESCGGGS
T ss_pred             CEEEEEECccc-CCHHHHHHHHHHHhcCC-CCeEEEEEcCCcccc
Confidence            45999999854 88888877777665431 256788999887654

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=84.38  E-value=1  Score=40.69  Aligned_cols=46  Identities=20%  Similarity=0.281  Sum_probs=35.4

Q ss_pred             hCCCCEEEeeCCCCCCCHHHHHHHH-HHHHHHHhC-CCEEEEecCChh
Q psy7366         106 LGNPPLIFLDEPTSGMDPGARRFLW-TCIERAVSE-GRCVILTSHNME  151 (566)
Q Consensus       106 ~~~p~vLlLDEPt~~LD~~~~~~l~-~~l~~l~~~-g~tviiisH~~~  151 (566)
                      +.+..++|+||+..|=+|.....+. .++..+... +..++++||..+
T Consensus       118 ~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~  165 (234)
T d1wb9a2         118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFE  165 (234)
T ss_dssp             CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred             cccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHH
Confidence            3445699999999999999887774 556677554 567888998754

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=84.31  E-value=0.2  Score=48.02  Aligned_cols=29  Identities=24%  Similarity=0.285  Sum_probs=23.1

Q ss_pred             EEEeCCcEEEEEcCCCCcHHHHHHHHHCCC
Q psy7366         367 FGVGRGECFGLLGLNGAGKTTTFKMLTGAI  396 (566)
Q Consensus       367 l~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~  396 (566)
                      ...++| ++.+.||.|+|||.|.+.|++..
T Consensus       119 ~~~~~g-~~l~~G~pG~GKT~la~ala~~~  147 (321)
T d1w44a_         119 HRYASG-MVIVTGKGNSGKTPLVHALGEAL  147 (321)
T ss_dssp             EEEESE-EEEEECSSSSCHHHHHHHHHHHH
T ss_pred             cccCCc-eEEEECCCCccHHHHHHHHHHHh
Confidence            445555 56678999999999999999864

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=83.79  E-value=2.7  Score=38.18  Aligned_cols=44  Identities=18%  Similarity=0.065  Sum_probs=28.2

Q ss_pred             hCCCCEEEeeCCCCCCCHH--------HHHHHHHHHHHHHh-CCCEEEEecCCh
Q psy7366         106 LGNPPLIFLDEPTSGMDPG--------ARRFLWTCIERAVS-EGRCVILTSHNM  150 (566)
Q Consensus       106 ~~~p~vLlLDEPt~~LD~~--------~~~~l~~~l~~l~~-~g~tviiisH~~  150 (566)
                      ..+|+++++| |.+-+++.        ....+..-|+++++ .+.+|++++|--
T Consensus       145 ~~~~~~vvID-~l~~l~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~vi~~~q~~  197 (277)
T d1cr2a_         145 GLGCDVIILD-HISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLK  197 (277)
T ss_dssp             TTCCSEEEEE-EEEC----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC
T ss_pred             ccCcceEEEc-ccccccccccccchhHHHHHHHHHHHHHhhhccccceeecccc
Confidence            4689999999 44444432        23445556777754 499999999953

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=83.38  E-value=0.25  Score=43.72  Aligned_cols=21  Identities=33%  Similarity=0.376  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHCC
Q psy7366         375 FGLLGLNGAGKTTTFKMLTGA  395 (566)
Q Consensus       375 ~~l~G~NGsGKSTLl~~i~G~  395 (566)
                      +|++|.-++|||||++.|.+.
T Consensus         6 i~iiGHvd~GKSTL~~~l~~~   26 (196)
T d1d2ea3           6 VGTIGHVDHGKTTLTAAITKI   26 (196)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHHH
Confidence            789999999999999999764

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=83.06  E-value=0.37  Score=45.76  Aligned_cols=24  Identities=46%  Similarity=0.664  Sum_probs=19.2

Q ss_pred             eEEEe-CCcEEEEEcCCCCcHHHHH
Q psy7366         366 SFGVG-RGECFGLLGLNGAGKTTTF  389 (566)
Q Consensus       366 sl~i~-~Ge~~~l~G~NGsGKSTLl  389 (566)
                      |-.+. .|++..+.|.+|+|||||-
T Consensus         7 san~~~~~~valffGLSGTGKTTLs   31 (318)
T d1j3ba1           7 SANVGKEGDVAVFFGLSGTGKTTLS   31 (318)
T ss_dssp             EEEECTTCCEEEEEECTTSCHHHHT
T ss_pred             ccccCCCCCEEEEEccCCCCccccc
Confidence            33344 4889999999999999985

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=82.50  E-value=0.34  Score=42.74  Aligned_cols=45  Identities=16%  Similarity=0.266  Sum_probs=25.8

Q ss_pred             CEEEEeCCCCCCCHHHHH---HHHHHHHHHHhCC-cEEEEEccCHHHHHh
Q psy7366         497 PLIFLDEPTSGMDPGARR---FLWTCIERAVSEG-RCVILTSHNMEECEA  542 (566)
Q Consensus       497 ~lllLDEPt~gLD~~~~~---~l~~~l~~~~~~g-~tvl~vsHd~~~~~~  542 (566)
                      -||++||...=++..+..   .+.++|+-+..+| ..+|.+|. .++..+
T Consensus       117 iILfIDeih~l~~~g~~~g~~d~~~~Lkp~L~rg~l~~IgatT-~eey~~  165 (195)
T d1jbka_         117 VILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATT-LDEYRQ  165 (195)
T ss_dssp             EEEEEETGGGGTT------CCCCHHHHHHHHHTTSCCEEEEEC-HHHHHH
T ss_pred             EEEEcchHHHHhcCCCCCCcccHHHHHHHHHhCCCceEEecCC-HHHHHH
Confidence            388999997777655432   3567777766665 45555554 445444

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=82.37  E-value=0.32  Score=43.82  Aligned_cols=39  Identities=15%  Similarity=0.179  Sum_probs=25.6

Q ss_pred             HHHHHHHHcCCCCEEE----EeCCCCCCCHHHHHHHHHHHHHHH
Q psy7366         485 KLSTAIALLGNPPLIF----LDEPTSGMDPGARRFLWTCIERAV  524 (566)
Q Consensus       485 rv~la~al~~~p~lll----LDEPt~gLD~~~~~~l~~~l~~~~  524 (566)
                      .+.+++++ .-+++++    +|.+...-|....+.+.+.+..+.
T Consensus       132 ~l~~~~~~-~~~~iIv~iNK~D~~~~~~~~~~~~~v~~~i~~~~  174 (224)
T d1jnya3         132 HIILAKTM-GLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFM  174 (224)
T ss_dssp             HHHHHHHT-TCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHh-CCCceEEEEEcccCCCccccHHHHHHHHHHHHhHH
Confidence            44555554 5666777    788777777776666666666653

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=82.12  E-value=0.31  Score=48.23  Aligned_cols=42  Identities=17%  Similarity=0.190  Sum_probs=29.8

Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHh
Q psy7366         498 LIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEA  542 (566)
Q Consensus       498 lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~  542 (566)
                      ++++||--+-....   .+.+++.+.++.|..+++++.++..+..
T Consensus       279 ~l~lDE~~~~~~~~---~l~~~l~~~Rk~Gv~~~l~~Qs~~ql~~  320 (433)
T d1e9ra_         279 WLFIDELASLEKLA---SLADALTKGRKAGLRVVAGLQSTSQLDD  320 (433)
T ss_dssp             EEEESCGGGSCBCS---SHHHHHHHCTTTTEEEEEEESCHHHHHH
T ss_pred             EEEechHhhhcccH---HHHHHHHHhCCCCceEEEEeccHHHHHH
Confidence            68889975543322   3556677776779999999999877643

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=81.67  E-value=0.23  Score=46.61  Aligned_cols=29  Identities=24%  Similarity=0.218  Sum_probs=24.6

Q ss_pred             eeEEEeCCcEEEEEcCCCCcHHHHHHHHH
Q psy7366         365 ISFGVGRGECFGLLGLNGAGKTTTFKMLT  393 (566)
Q Consensus       365 isl~i~~Ge~~~l~G~NGsGKSTLl~~i~  393 (566)
                      .=+.+.+|+.++|+|+.|+|||||+.-++
T Consensus        61 ~l~pig~GQr~~If~~~g~GKt~ll~~~~   89 (285)
T d2jdia3          61 SLVPIGRGQRELIIGDRQTGKTSIAIDTI   89 (285)
T ss_dssp             HHSCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred             cccCccCCCEEEeecCCCCChHHHHHHHH
Confidence            34688999999999999999999986443

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=81.65  E-value=0.3  Score=46.21  Aligned_cols=20  Identities=40%  Similarity=0.650  Sum_probs=17.9

Q ss_pred             eCCcEEEEEcCCCCcHHHHH
Q psy7366         370 GRGECFGLLGLNGAGKTTTF  389 (566)
Q Consensus       370 ~~Ge~~~l~G~NGsGKSTLl  389 (566)
                      +.|++..+.|.+|+|||||-
T Consensus        12 ~~~~~alfFGLSGTGKTTLs   31 (313)
T d2olra1          12 EKGDVAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             TTSCEEEEECSTTSSHHHHH
T ss_pred             CCCCEEEEEccCCCCcccce
Confidence            46889999999999999976

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=81.57  E-value=0.37  Score=44.82  Aligned_cols=21  Identities=33%  Similarity=0.267  Sum_probs=18.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHCC
Q psy7366         375 FGLLGLNGAGKTTTFKMLTGA  395 (566)
Q Consensus       375 ~~l~G~NGsGKSTLl~~i~G~  395 (566)
                      +.|+||.|+|||+++.-++-.
T Consensus        42 ~lLVG~~GvGKTalv~~la~r   62 (268)
T d1r6bx2          42 PLLVGESGVGKTAIAEGLAWR   62 (268)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             cEEECCCCCcHHHHHHHHHHH
Confidence            459999999999999888753

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=81.06  E-value=0.33  Score=46.51  Aligned_cols=24  Identities=33%  Similarity=0.313  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCCC
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAIK  397 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~~  397 (566)
                      .|+|=|+=||||||+++.|...+.
T Consensus         6 rI~IEG~iGsGKTTl~~~La~~l~   29 (329)
T d1e2ka_           6 RVYIDGPHGMGKTTTTQLLVALGS   29 (329)
T ss_dssp             EEEECSCTTSSHHHHHHHHTC---
T ss_pred             EEEEECCcCCCHHHHHHHHHHHhC
Confidence            478899999999999999987654

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=80.27  E-value=0.39  Score=45.72  Aligned_cols=36  Identities=25%  Similarity=0.282  Sum_probs=25.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHCCCC-CCccEEEEcCcc
Q psy7366         374 CFGLLGLNGAGKTTTFKMLTGAIK-PTSGNAYVMNHS  409 (566)
Q Consensus       374 ~~~l~G~NGsGKSTLl~~i~G~~~-~~~G~i~~~g~~  409 (566)
                      .+.++||+|+|||.|.+.|+-.+- ....-+.++...
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~~~   91 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTE   91 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTT
T ss_pred             EEEEECCCcchHHHHHHHHHHHhcCCCcceEEEeccc
Confidence            467899999999999999997652 223345565443