Diaphorina citri psyllid: psy8417


Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320------
MGAIPISEIVVIYPVTIARTNGIMSTQQSPTVLQQQQALLPVEREKIYQWILELSIPETRENALLELSKKREVVPDLAPMLWHSFGTIAALLQEIINIYPTINPATLTAHQSNRVCNALALLQCVASHQETRSLFLAAHIPLFLYPFLHTTSKTRPFEYLRLTSLGVIGALVKTDEQEVITFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDSGLSYICQTYDRFSHVAMILGKMVISLEKDQSSRLLKHVVRCYLRLSDNARAREALRQCLPDQLRDSTFSVCLNDDKSTKNWLAQLIKNLESVSAGVVLGAGNNLAPQ
ccccccccEEEEccccccccccccccccccHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHcHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccHHHcccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccHHHHHHHHHcccccccccHHHHHHcccHHHHHHHHHHHHHHcccccccccccccccccc
***IPISEIVVIYPVTIART********************PVEREKIYQWILELSIPETRENALLELSKKREVVPDLAPMLWHSFGTIAALLQEIINIYPTINPATLTAHQSNRVCNALALLQCVASHQETRSLFLAAHIPLFLYPFLHTTSKTRPFEYLRLTSLGVIGALVKTDEQEVITFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDSGLSYICQTYDRFSHVAMILGKMVISLEKDQSSRLLKHVVRCYLRLSDNARAREALRQCLPDQLRDSTFSVCLNDDKSTKNWLAQLIKNLES****************
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MGAIPISEIVVIYPVTIARTNGIMSTQQSPTVLQQQQALLPVEREKIYQWILELSIPETRENALLELSKKREVVPDLAPMLWHSFGTIAALLQEIINIYPTINPATLTAHQSNRVCNALALLQCVASHQETRSLFLAAHIPLFLYPFLHTTSKTRPFEYLRLTSLGVIGALVKTDEQEVITFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDSGLSYICQTYDRFSHVAMILGKMVISLEKDQSSRLLKHVVRCYLRLSDNARAREALRQCLPDQLRDSTFSVCLNDDKSTKNWLAQLIKNLESVSAGVVLGAGNNLAPQ

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Cell differentiation protein RCD1 homolog Transcription factor that down-regulates MYB- and JUN-dependent transcription. May play a role in cell differentiation.very confidentQ6NWL4
Cell differentiation protein RCD1 homolog Transcription factor that down-regulates MYB- and JUN-dependent transcription. May play a role in cell differentiation (By similarity). Can bind oligonucleotides, such as poly-G, poly-C or poly-T (in vitro), but the physiological relevance of this is not certain. Does not bind poly-A.very confidentQ92600
Cell differentiation protein RCD1 homolog Transcription factor that down-regulates MYB- and JUN-dependent transcription. May play a role in cell differentiation.very confidentQ6P819

Prediction of Gene Ontology Terms ?

GO Term ?Description ?Confidence Level ?Parent GO Terms ?
GO:0044424 [CC]intracellular partvery confidentGO:0005575, GO:0044464, GO:0005623, GO:0005622
GO:0032991 [CC]macromolecular complexvery confidentGO:0005575
GO:2000327 [BP]positive regulation of ligand-dependent nuclear receptor transcription coactivator activityconfidentGO:2000325, GO:0050794, GO:0065007, GO:0044093, GO:0008150, GO:0065009, GO:0050789
GO:0019221 [BP]cytokine-mediated signaling pathwayconfidentGO:0044700, GO:0051716, GO:0034097, GO:0008150, GO:0071345, GO:0050896, GO:0009987, GO:0050794, GO:0023052, GO:0050789, GO:0071310, GO:0065007, GO:0044763, GO:0007165, GO:0007166, GO:0042221, GO:0007154, GO:0070887, GO:0010033, GO:0044699
GO:0033147 [BP]negative regulation of intracellular estrogen receptor signaling pathwayconfidentGO:0033144, GO:0033146, GO:0009968, GO:0033143, GO:0009966, GO:0048585, GO:0048583, GO:0050794, GO:0008150, GO:0023057, GO:0065007, GO:0010648, GO:0023051, GO:0048519, GO:0010646, GO:0050789, GO:0048523
GO:0030014 [CC]CCR4-NOT complexconfidentGO:0043234, GO:0032991, GO:0044464, GO:0005623, GO:0005622, GO:0005575, GO:0044424
GO:0005515 [MF]protein bindingconfidentGO:0003674, GO:0005488
GO:0000932 [CC]cytoplasmic mRNA processing bodyconfidentGO:0005737, GO:0035770, GO:0043232, GO:0044464, GO:0043229, GO:0005623, GO:0030529, GO:0005575, GO:0044444, GO:0043228, GO:0044424, GO:0032991, GO:0005622, GO:0043226
GO:0005829 [CC]cytosolconfidentGO:0005737, GO:0044464, GO:0005623, GO:0005622, GO:0005575, GO:0044444, GO:0044424
GO:0007548 [BP]sex differentiationconfidentGO:0032502, GO:0003006, GO:0008150, GO:0000003, GO:0022414
GO:0006355 [BP]regulation of transcription, DNA-dependentconfidentGO:0009889, GO:0080090, GO:0019222, GO:0060255, GO:0031326, GO:0031323, GO:0051252, GO:2000112, GO:0050794, GO:0050789, GO:0019219, GO:0010556, GO:0065007, GO:0051171, GO:2001141, GO:0008150, GO:0010468
GO:0006351 [BP]transcription, DNA-dependentconfidentGO:0032774, GO:0090304, GO:0044249, GO:0034641, GO:0006807, GO:0034645, GO:1901362, GO:1901360, GO:1901576, GO:0044260, GO:0071704, GO:0010467, GO:0018130, GO:0006139, GO:0009987, GO:0006725, GO:0009058, GO:0009059, GO:0008150, GO:0008152, GO:0034654, GO:0046483, GO:0016070, GO:0044238, GO:0044271, GO:0044237, GO:0043170, GO:0019438
GO:0000289 [BP]nuclear-transcribed mRNA poly(A) tail shorteningconfidentGO:0090304, GO:0034641, GO:0006807, GO:1901360, GO:1901361, GO:0006139, GO:1901575, GO:0044265, GO:0000288, GO:0044260, GO:0071704, GO:0010467, GO:0006401, GO:0006402, GO:0044238, GO:0031124, GO:0009987, GO:0006725, GO:0031123, GO:0046700, GO:0008150, GO:0008152, GO:0034655, GO:0009056, GO:0009057, GO:0044248, GO:0046483, GO:0016070, GO:0016071, GO:0044270, GO:0044237, GO:0043170, GO:0000956, GO:0019439, GO:0006396, GO:0006397
GO:0005634 [CC]nucleusconfidentGO:0043231, GO:0044464, GO:0005623, GO:0005622, GO:0005575, GO:0043229, GO:0044424, GO:0043227, GO:0043226
GO:0031581 [BP]hemidesmosome assemblyprobableGO:0022607, GO:0034330, GO:0016043, GO:0007044, GO:0044763, GO:0071840, GO:0008150, GO:0009987, GO:0034329, GO:0044699, GO:0044085
GO:0009792 [BP]embryo development ending in birth or egg hatchingprobableGO:0032502, GO:0032501, GO:0044707, GO:0048856, GO:0044767, GO:0009790, GO:0008150, GO:0007275, GO:0044699
GO:0000122 [BP]negative regulation of transcription from RNA polymerase II promoterprobableGO:0009892, GO:0080090, GO:0009890, GO:0031327, GO:0031326, GO:0031324, GO:0031323, GO:0010629, GO:0050789, GO:0010605, GO:0019222, GO:2000112, GO:2000113, GO:0060255, GO:0006357, GO:0065007, GO:0048519, GO:0010468, GO:0045934, GO:0019219, GO:0009889, GO:0050794, GO:0045892, GO:0051171, GO:0051172, GO:2001141, GO:0051253, GO:0051252, GO:0006355, GO:0010556, GO:0008150, GO:0010558, GO:0048523
GO:0010515 [BP]negative regulation of induction of conjugation with cellular fusionprobableGO:0046999, GO:0031138, GO:0031137, GO:0031135, GO:0050794, GO:0008150, GO:0043900, GO:0043901, GO:0065007, GO:0048519, GO:0050789, GO:0048523
GO:0006354 [BP]DNA-dependent transcription, elongationprobableGO:0032774, GO:0090304, GO:0044249, GO:0034641, GO:0006807, GO:0034645, GO:1901362, GO:1901360, GO:1901576, GO:0044260, GO:0071704, GO:0010467, GO:0018130, GO:0006139, GO:0009987, GO:0006725, GO:0009058, GO:0009059, GO:0008150, GO:0008152, GO:0034654, GO:0046483, GO:0016070, GO:0044238, GO:0044271, GO:0044237, GO:0043170, GO:0006351, GO:0019438
GO:0006352 [BP]DNA-dependent transcription, initiationprobableGO:0032774, GO:0090304, GO:0044249, GO:0034641, GO:0006807, GO:0034645, GO:1901362, GO:1901360, GO:1901576, GO:0044260, GO:0071704, GO:0010467, GO:0018130, GO:0006139, GO:0009987, GO:0006725, GO:0009058, GO:0009059, GO:0008150, GO:0008152, GO:0034654, GO:0046483, GO:0016070, GO:0044238, GO:0044271, GO:0044237, GO:0043170, GO:0006351, GO:0019438
GO:0030154 [BP]cell differentiationprobableGO:0032502, GO:0048869, GO:0009987, GO:0044763, GO:0008150, GO:0044699
GO:0031142 [BP]induction of conjugation upon nitrogen starvationprobableGO:0009991, GO:0031139, GO:0031136, GO:0031137, GO:0042594, GO:0050789, GO:0044699, GO:0051716, GO:0043562, GO:0043900, GO:0046999, GO:0065007, GO:0048518, GO:0071496, GO:0031140, GO:0050794, GO:0043902, GO:0006950, GO:0031669, GO:0044763, GO:0009267, GO:0007154, GO:0031668, GO:0006995, GO:0009605, GO:0050896, GO:0031667, GO:0033554, GO:0008150, GO:0009987, GO:0048522
GO:0030015 [CC]CCR4-NOT core complexprobableGO:0043234, GO:0032991, GO:0044464, GO:0005623, GO:0005622, GO:0005575, GO:0030014, GO:0044424
GO:0003723 [MF]RNA bindingprobableGO:0097159, GO:0003674, GO:1901363, GO:0003676, GO:0005488

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!


Spatial Structural Prediction

Structural Models Based on Templates

Template: 2FV2, chain A
Confidence level:very confident
Coverage over the Query: 44-309
View the alignment between query and template
View the model in PyMOL