Psyllid ID: psy8478

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------
Protein Sequence
MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPANCSHLIRSRNRLTENKAPSAVSKKRIH
Secondary Structure (PSIPRED)
ccEEcccHHHHcccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHccccccccccccHHHHHHHHHHccccccccHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHccHHHHHHccccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHccccccccccccHHHHHHHHHHccccHcccccEEcc
Coil and Loop (DISEMBL)
mtrwmapeclvdglfssqsdVWAFGVLLWEIMSlgqqpypartnvdvlhyvrgggrlnrpancsHLIRSrnrltenkapsavskkrih
Flexible Loop (DISEMBL)
MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRgggrlnrpancshlirsrnrltenkapsavskkrih
Low Complexity Region (SEG)
MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPANCSHLIRSRNRLTENKAPSAVSKKRIH
Disordered region (IsUnstruct)
***WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPANCSHL**********************
Disordered Region (DISOPRED)
MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPANCSHLIRSRNRLTENKAPSAV*KKRIH
Disordered Region (DISEMBL)
MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPANCSHLIRSRNRLTE*************
Disordered Region (DISPRO)
MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPANCSHLIRSRNRLTENKAPSAVSKKR**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPANCSHLIRSRNRLTENKAPSAVSKKRIH
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	88	2.2.26 [Sep-21-2011]
P08941	2311	Proto-oncogene tyrosine-p	yes	N/A	0.75	0.028	0.651	1e-22
P00529	402	Tyrosine-protein kinase t	N/A	N/A	0.772	0.169	0.632	2e-22
Q78DX7	2340	Proto-oncogene tyrosine-p	yes	N/A	0.693	0.026	0.688	2e-22
Q63132	2338	Proto-oncogene tyrosine-p	yes	N/A	0.693	0.026	0.688	2e-22
P08922	2347	Proto-oncogene tyrosine-p	yes	N/A	0.693	0.025	0.672	3e-22
P13368	2554	Protein sevenless OS=Dros	yes	N/A	0.772	0.026	0.632	5e-21
P20806	2594	Protein sevenless OS=Dros	N/A	N/A	0.693	0.023	0.704	4e-20
Q25197	1477	Putative insulin-like pep	N/A	N/A	0.875	0.052	0.493	6e-18
Q9UM73	1620	ALK tyrosine kinase recep	no	N/A	0.693	0.037	0.540	2e-17
P97793	1621	ALK tyrosine kinase recep	no	N/A	0.693	0.037	0.540	2e-17

>sp|P08941|ROS1_CHICK Proto-oncogene tyrosine-protein kinase ROS OS=Gallus gallus GN=ROS1 PE=1 SV=3

 Score =  105 bits (261), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 43/66 (65%), Positives = 54/66 (81%)

Query: 3    RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
            RWMAPE L+DG+F++ SDVWAFGVL+WE ++LGQQPYP  +N++VLH+VR GGRL  P N
Sbjct: 2143 RWMAPESLIDGVFTNHSDVWAFGVLVWETLTLGQQPYPGLSNIEVLHHVRSGGRLESPNN 2202

Query: 63   CSHLIR 68
            C   IR
Sbjct: 2203 CPDDIR 2208

Orphan receptor tyrosine kinase (RTK) that may activate several downstream signaling pathways related to cell differentiation, proliferation, growth and survival including the PI3 kinase-mTOR signaling pathway. Mediates the phosphorylation of PTPN11, an activator of this pathway. May also phosphorylate and activate the transcription factor STAT3 to control anchorage-independent cell growth. Mediates the phosphorylation and the activation of VAV3, a guanine nucleotide exchange factor regulating cell morphology. May activate other downstream signaling proteins including AKT1, MAPK1, MAPK3, IRS1, and PLCG2.
Gallus gallus (taxid: 9031)
EC: 2EC: .EC: 7EC: .EC: 1EC: 0EC: .EC: 1

>sp|P00529|ROS_AVISU Tyrosine-protein kinase transforming protein ros OS=UR2 sarcoma virus GN=V-ROS PE=3 SV=1

 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 43/68 (63%), Positives = 54/68 (79%)

Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            RWMAPE L+DG+F++ SDVWAFGVL+WE ++LGQQPYP  +N++VLH+VR GGRL  P 
Sbjct: 279 VRWMAPESLIDGVFTNHSDVWAFGVLVWETLTLGQQPYPGLSNIEVLHHVRSGGRLESPN 338

Query: 62  NCSHLIRS 69
           NC   IR 
Sbjct: 339 NCPDDIRD 346

Galliformes (taxid: 8976)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 0

EC: .

EC: 1

>sp|Q78DX7|ROS1_MOUSE Proto-oncogene tyrosine-protein kinase ROS OS=Mus musculus GN=Ros1 PE=1 SV=1

 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 42/61 (68%), Positives = 54/61 (88%)

Query: 3    RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
            RWMAPE L+DG+F+SQSDVW+FG+L+WEI++LG QPYPA +N+DVL+YV+ GGRL  P N
Sbjct: 2119 RWMAPENLMDGIFTSQSDVWSFGILVWEILTLGHQPYPAHSNLDVLNYVQAGGRLEPPRN 2178

Query: 63   C 63
            C
Sbjct: 2179 C 2179

Orphan receptor tyrosine kinase (RTK) that plays a role in epithelial cell differentiation and regionalization of the proximal epididymal epithelium. May activate several downstream signaling pathways related to cell differentiation, proliferation, growth and survival including the PI3 kinase-mTOR signaling pathway. Mediates the phosphorylation of PTPN11, an activator of this pathway. May also phosphorylate and activate the transcription factor STAT3 to control anchorage-independent cell growth. Mediates the phosphorylation and the activation of VAV3, a guanine nucleotide exchange factor regulating cell morphology. May activate other downstream signaling proteins including AKT1, MAPK1, MAPK3, IRS1, and PLCG2.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 0

EC: .

EC: 1

>sp|Q63132|ROS1_RAT Proto-oncogene tyrosine-protein kinase ROS OS=Rattus norvegicus GN=Ros1 PE=2 SV=1

 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 42/61 (68%), Positives = 54/61 (88%)

Query: 3    RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
            RWMAPE L+DG+F+SQSDVW+FG+L+WEI++LG QPYPA +N+DVL+YV+ GGRL  P N
Sbjct: 2118 RWMAPENLMDGIFTSQSDVWSFGILVWEILTLGHQPYPAHSNLDVLNYVQAGGRLEPPRN 2177

Query: 63   C 63
            C
Sbjct: 2178 C 2178

Orphan receptor tyrosine kinase (RTK) that plays a role in epithelial cell differentiation and regionalization of the proximal epididymal epithelium. May activate several downstream signaling pathways related to cell differentiation, proliferation, growth and survival including the PI3 kinase-mTOR signaling pathway. Mediates the phosphorylation of PTPN11, an activator of this pathway. May also phosphorylate and activate the transcription factor STAT3 to control anchorage-independent cell growth. Mediates the phosphorylation and the activation of VAV3, a guanine nucleotide exchange factor regulating cell morphology. May activate other downstream signaling proteins including AKT1, MAPK1, MAPK3, IRS1 and PLCG2.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 0

EC: .

EC: 1

>sp|P08922|ROS1_HUMAN Proto-oncogene tyrosine-protein kinase ROS OS=Homo sapiens GN=ROS1 PE=1 SV=3

 Score =  103 bits (257), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 41/61 (67%), Positives = 54/61 (88%)

Query: 3    RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
            RWMAPE L+DG+F++QSDVW+FG+L+WEI++LG QPYPA +N+DVL+YV+ GGRL  P N
Sbjct: 2126 RWMAPESLMDGIFTTQSDVWSFGILIWEILTLGHQPYPAHSNLDVLNYVQTGGRLEPPRN 2185

Query: 63   C 63
            C
Sbjct: 2186 C 2186

Orphan receptor tyrosine kinase (RTK) that plays a role in epithelial cell differentiation and regionalization of the proximal epididymal epithelium. May activate several downstream signaling pathways related to cell differentiation, proliferation, growth and survival including the PI3 kinase-mTOR signaling pathway. Mediates the phosphorylation of PTPN11, an activator of this pathway. May also phosphorylate and activate the transcription factor STAT3 to control anchorage-independent cell growth. Mediates the phosphorylation and the activation of VAV3, a guanine nucleotide exchange factor regulating cell morphology. May activate other downstream signaling proteins including AKT1, MAPK1, MAPK3, IRS1 and PLCG2.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 0

EC: .

EC: 1

>sp|P13368|7LESS_DROME Protein sevenless OS=Drosophila melanogaster GN=sev PE=1 SV=2

 Score = 99.8 bits (247), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 43/68 (63%), Positives = 54/68 (79%)

Query: 2    TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
             RWM+PE LVDGLF++QSDVWAFGVL WEI++LGQQPY AR N +VL +V+ GGRL +P 
Sbjct: 2391 VRWMSPESLVDGLFTTQSDVWAFGVLCWEILTLGQQPYAARNNFEVLAHVKEGGRLQQPP 2450

Query: 62   NCSHLIRS 69
             C+  + S
Sbjct: 2451 MCTEKLYS 2458

Receptor for an extracellular signal required to instruct a cell to differentiate into an R7 photoreceptor. The ligand for sev is the boss (bride of sevenless) protein on the surface of the neighboring R8 cell.

Drosophila melanogaster (taxid: 7227)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 0

EC: .

EC: 1

>sp|P20806|7LESS_DROVI Protein sevenless OS=Drosophila virilis GN=sev PE=3 SV=1

 Score = 96.7 bits (239), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 43/61 (70%), Positives = 49/61 (80%)

Query: 3    RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
            RWMA E LVDGLFS+QSDVWAFGVL WEI +LGQQPY AR N +VL +V+ GGRL +P  
Sbjct: 2403 RWMALESLVDGLFSTQSDVWAFGVLCWEIFTLGQQPYAARNNFEVLAHVKEGGRLQQPER 2462

Query: 63   C 63
            C
Sbjct: 2463 C 2463

Receptor for an extracellular signal required to instruct a cell to differentiate into a R7 photoreceptor. The ligand for Sev is the Boss (Bride of Sevenless) protein.

Drosophila virilis (taxid: 7244)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 0

EC: .

EC: 1

>sp|Q25197|HTK7_HYDVU Putative insulin-like peptide receptor OS=Hydra vulgaris GN=HTK7 PE=2 SV=1

 Score = 89.4 bits (220), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 38/77 (49%), Positives = 51/77 (66%)

Query: 3    RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
            RWMAPE L DG+FS+ SDVW+FGV+LWEI +L  QPY  +TN  VL++V   G L+ P  
Sbjct: 1217 RWMAPESLKDGIFSTASDVWSFGVVLWEICTLASQPYQGKTNEQVLNFVLSNGHLDYPEG 1276

Query: 63   CSHLIRSRNRLTENKAP 79
            C + +R    L  ++ P
Sbjct: 1277 CDYQLREFMSLCWHRDP 1293

This receptor probably binds an insulin related protein and has a tyrosine-protein kinase activity.

Hydra vulgaris (taxid: 6087)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 0

EC: .

EC: 1

>sp|Q9UM73|ALK_HUMAN ALK tyrosine kinase receptor OS=Homo sapiens GN=ALK PE=1 SV=3

 Score = 88.2 bits (217), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 48/61 (78%)

Query: 3    RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
            +WM PE  ++G+F+S++D W+FGVLLWEI SLG  PYP+++N +VL +V  GGR++ P N
Sbjct: 1294 KWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMDPPKN 1353

Query: 63   C 63
            C
Sbjct: 1354 C 1354

Neuronal orphan receptor tyrosine kinase that is essentially and transiently expressed in specific regions of the central and peripheral nervous systems and plays an important role in the genesis and differentiation of the nervous system. Transduces signals from ligands at the cell surface, through specific activation of the mitogen-activated protein kinase (MAPK) pathway. Phosphorylates almost exclusively at the first tyrosine of the Y-x-x-x-Y-Y motif. Following activation by ligand, ALK induces tyrosine phosphorylation of CBL, FRS2, IRS1 and SHC1, as well as of the MAP kinases MAPK1/ERK2 and MAPK3/ERK1. Acts as a receptor for ligands pleiotrophin (PTN), a secreted growth factor, and midkine (MDK), a PTN-related factor, thus participating in PTN and MDK signal transduction. PTN-binding induces MAPK pathway activation, which is important for the anti-apoptotic signaling of PTN and regulation of cell proliferation. MDK-binding induces phosphorylation of the ALK target insulin receptor substrate (IRS1), activates mitogen-activated protein kinases (MAPKs) and PI3-kinase, resulting also in cell proliferation induction. Drives NF-kappa-B activation, probably through IRS1 and the activation of the AKT serine/threonine kinase. Recruitment of IRS1 to activated ALK and the activation of NF-kappa-B are essential for the autocrine growth and survival signaling of MDK.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 0

EC: .

EC: 1

>sp|P97793|ALK_MOUSE ALK tyrosine kinase receptor OS=Mus musculus GN=Alk PE=1 SV=2

 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 48/61 (78%)

Query: 3    RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
            +WM PE  ++G+F+S++D W+FGVLLWEI SLG  PYP+++N +VL +V  GGR++ P N
Sbjct: 1298 KWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMDPPKN 1357

Query: 63   C 63
            C
Sbjct: 1358 C 1358

Neuronal orphan receptor tyrosine kinase that is essentially and transiently expressed in specific regions of the central and peripheral nervous systems and plays an important role in the genesis and differentiation of the nervous system. Transduces signals from ligands at the cell surface, through specific activation of the mitogen-activated protein kinase (MAPK) pathway. Phosphorylates almost exclusively at the first tyrosine of the Y-x-x-x-Y-Y motif. Following activation by ligand, ALK induces tyrosine phosphorylation of CBL, FRS2, IRS1 and SHC1, as well as of the MAP kinases MAPK1/ERK2 and MAPK3/ERK1. Acts as a receptor for ligands pleiotrophin (PTN), a secreted growth factor, and midkine (MDK), a PTN-related factor, thus participating in PTN and MDK signal transduction. PTN-binding induces MAPK pathway activation, which is important for the anti-apoptotic signaling of PTN and regulation of cell proliferation. MDK-binding induces phosphorylation of the ALK target insulin receptor substrate (IRS1), activates mitogen-activated protein kinases (MAPKs) and PI3-kinase, resulting also in cell proliferation induction. Drives NF-kappa-B activation, probably through IRS1 and the activation of the AKT serine/threonine kinase. Recruitment of IRS1 to activated ALK and the activation of NF-kappa-B are essential for the autocrine growth and survival signaling of MDK.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 0

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	88
242024655	2303	tyrosine-protein kinase, putative [Pedic	0.693	0.026	0.836	5e-27
170051297	2500	tyrosine-protein kinase [Culex quinquefa	0.693	0.024	0.803	4e-25
307166553	2405	Proto-oncogene tyrosine-protein kinase R	0.693	0.025	0.819	5e-25
157116740	2073	tyrosine-protein kinase [Aedes aegypti]	0.693	0.029	0.803	7e-25
328792471	2611	PREDICTED: proto-oncogene tyrosine-prote	0.693	0.023	0.803	9e-25
380011399	2549	PREDICTED: LOW QUALITY PROTEIN: proto-on	0.693	0.023	0.803	2e-24
270002846	2332	sevenless [Tribolium castaneum]	0.693	0.026	0.803	2e-24
332023714	2474	Proto-oncogene tyrosine-protein kinase R	0.693	0.024	0.803	2e-24
321455100	2422	hypothetical protein DAPPUDRAFT_332355 [	0.693	0.025	0.786	3e-24
383856693	2550	PREDICTED: proto-oncogene tyrosine-prote	0.693	0.023	0.803	4e-24

>gi|242024655|ref|XP_002432742.1| tyrosine-protein kinase, putative [Pediculus humanus corporis] gi|212518227|gb|EEB20004.1| tyrosine-protein kinase, putative [Pediculus humanus corporis]

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 51/61 (83%), Positives = 58/61 (95%)

Query: 3    RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
            RWMAPE LVDG+F+SQSDVWAFGVL+WEIM+LGQQPYPARTN++VLHYVR GGRL RP+N
Sbjct: 2096 RWMAPESLVDGVFTSQSDVWAFGVLIWEIMTLGQQPYPARTNLEVLHYVRAGGRLERPSN 2155

Query: 63   C 63
            C
Sbjct: 2156 C 2156

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170051297|ref|XP_001861700.1| tyrosine-protein kinase [Culex quinquefasciatus] gi|167872637|gb|EDS36020.1| tyrosine-protein kinase [Culex quinquefasciatus]

 Score =  118 bits (296), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 49/61 (80%), Positives = 57/61 (93%)

Query: 3    RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
            RWM+PE LVDG+++SQSD+WAFGVLLWEIM+LGQQPYPAR NV+VLHYVRGGGRL RP +
Sbjct: 2167 RWMSPESLVDGVYTSQSDIWAFGVLLWEIMTLGQQPYPARNNVEVLHYVRGGGRLGRPQD 2226

Query: 63   C 63
            C
Sbjct: 2227 C 2227

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307166553|gb|EFN60620.1| Proto-oncogene tyrosine-protein kinase ROS [Camponotus floridanus]

 Score =  118 bits (295), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 50/61 (81%), Positives = 56/61 (91%)

Query: 3    RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
            RWMAPE LVDG+F+SQSDVWAFGVL+WEI SLGQQPYPARTN++VLHYVR GGRL +P N
Sbjct: 2000 RWMAPESLVDGIFTSQSDVWAFGVLIWEITSLGQQPYPARTNLEVLHYVRAGGRLPKPLN 2059

Query: 63   C 63
            C
Sbjct: 2060 C 2060

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157116740|ref|XP_001658612.1| tyrosine-protein kinase [Aedes aegypti] gi|108876293|gb|EAT40518.1| AAEL007742-PA, partial [Aedes aegypti]

 Score =  117 bits (294), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 49/61 (80%), Positives = 56/61 (91%)

Query: 3    RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
            RWM+PE LVDG+F+SQSD+WAFGVLLWEIM+LGQQPYPAR NV+VLHYVR GGRL RP +
Sbjct: 1990 RWMSPESLVDGVFTSQSDIWAFGVLLWEIMTLGQQPYPARNNVEVLHYVRDGGRLTRPQD 2049

Query: 63   C 63
            C
Sbjct: 2050 C 2050

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328792471|ref|XP_394148.4| PREDICTED: proto-oncogene tyrosine-protein kinase ROS [Apis mellifera]

 Score =  117 bits (293), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 49/61 (80%), Positives = 57/61 (93%)

Query: 3    RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
            RWMAPE LVDG+F+SQSDVWAFGVL+WEI SLGQQPYPARTN++VLH+VR GGRL++P N
Sbjct: 2223 RWMAPESLVDGVFTSQSDVWAFGVLMWEITSLGQQPYPARTNIEVLHHVRAGGRLSKPLN 2282

Query: 63   C 63
            C
Sbjct: 2283 C 2283

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380011399|ref|XP_003689794.1| PREDICTED: LOW QUALITY PROTEIN: proto-oncogene tyrosine-protein kinase ROS-like [Apis florea]

 Score =  116 bits (290), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 49/61 (80%), Positives = 56/61 (91%)

Query: 3    RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
            RWMAPE LVDG+F+SQSDVWAFGVL+WEI SLGQQPYPARTN++VLH+VR GGRL +P N
Sbjct: 2161 RWMAPESLVDGVFTSQSDVWAFGVLMWEITSLGQQPYPARTNIEVLHHVRAGGRLPKPLN 2220

Query: 63   C 63
            C
Sbjct: 2221 C 2221

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270002846|gb|EEZ99293.1| sevenless [Tribolium castaneum]

 Score =  116 bits (290), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 49/61 (80%), Positives = 56/61 (91%)

Query: 3    RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
            RWMAPE LVDG+F+SQSDVWAFGVLLWEIM+LGQQPYPAR N++VLHYVR GGRL +P +
Sbjct: 2131 RWMAPESLVDGVFTSQSDVWAFGVLLWEIMTLGQQPYPARNNLEVLHYVRRGGRLGKPTD 2190

Query: 63   C 63
            C
Sbjct: 2191 C 2191

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332023714|gb|EGI63938.1| Proto-oncogene tyrosine-protein kinase ROS [Acromyrmex echinatior]

 Score =  115 bits (289), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 49/61 (80%), Positives = 55/61 (90%)

Query: 3    RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
            RWMAPE LVDG+F+SQSDVWAFGVL+WEI SLGQQPYPAR N++VLHYVR GGRL +P N
Sbjct: 2051 RWMAPESLVDGVFTSQSDVWAFGVLMWEITSLGQQPYPARNNLEVLHYVRAGGRLPKPLN 2110

Query: 63   C 63
            C
Sbjct: 2111 C 2111

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321455100|gb|EFX66243.1| hypothetical protein DAPPUDRAFT_332355 [Daphnia pulex]

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 48/61 (78%), Positives = 57/61 (93%)

Query: 3    RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
            RWMAPE LVDG+F+SQ+DVW+FGVLLWEI++LGQQPYPARTN+ VLH+VR GGRL+RP N
Sbjct: 2111 RWMAPESLVDGVFTSQTDVWSFGVLLWEILTLGQQPYPARTNLQVLHFVRTGGRLDRPPN 2170

Query: 63   C 63
            C
Sbjct: 2171 C 2171

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383856693|ref|XP_003703842.1| PREDICTED: proto-oncogene tyrosine-protein kinase ROS [Megachile rotundata]

 Score =  115 bits (287), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 49/61 (80%), Positives = 56/61 (91%)

Query: 3    RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
            RWMAPE LVDG+F+SQSDVWAFGVL+WEI SLGQQPYPARTN++VLH+VR GGRL +P N
Sbjct: 2163 RWMAPESLVDGVFTSQSDVWAFGVLMWEITSLGQQPYPARTNLEVLHHVRAGGRLPKPLN 2222

Query: 63   C 63
            C
Sbjct: 2223 C 2223

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	88
UNIPROTKB|F1NQM0	302	ROS1 "Proto-oncogene tyrosine-	0.75	0.218	0.651	1.1e-21
UNIPROTKB|E1C4N9	2262	ROS1 "Tyrosine-protein kinase	0.75	0.029	0.651	6.6e-20
UNIPROTKB|F1NQL9	2311	ROS1 "Tyrosine-protein kinase	0.75	0.028	0.651	6.7e-20
UNIPROTKB|P08941	2311	ROS1 "Proto-oncogene tyrosine-	0.75	0.028	0.651	6.7e-20
RGD|3591	2338	Ros1 "c-ros oncogene 1 , recep	0.693	0.026	0.688	6.8e-20
MGI|MGI:97999	2340	Ros1 "Ros1 proto-oncogene" [Mu	0.693	0.026	0.688	6.8e-20
UNIPROTKB|I3LEW1	2305	ROS1 "Uncharacterized protein"	0.693	0.026	0.672	1.1e-19
UNIPROTKB|Q5H8Y1	2341	ROS1 "Proto-oncogene tyrosine-	0.693	0.026	0.672	1.1e-19
UNIPROTKB|P08922	2347	ROS1 "Proto-oncogene tyrosine-	0.693	0.025	0.672	1.1e-19
UNIPROTKB|F1PUF3	2343	ROS1 "Tyrosine-protein kinase	0.693	0.026	0.655	3e-19

UNIPROTKB|F1NQM0 ROS1 "Proto-oncogene tyrosine-protein kinase ROS" [Gallus gallus (taxid:9031)]

 Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 43/66 (65%), Positives = 54/66 (81%)

Query:     3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
             RWMAPE L+DG+F++ SDVWAFGVL+WE ++LGQQPYP  +N++VLH+VR GGRL  P N
Sbjct:   134 RWMAPESLIDGVFTNHSDVWAFGVLVWETLTLGQQPYPGLSNIEVLHHVRSGGRLESPNN 193

Query:    63 CSHLIR 68
             C   IR
Sbjct:   194 CPDDIR 199

GO:0004714 "transmembrane receptor protein tyrosine kinase activity" evidence=IEA

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|E1C4N9 ROS1 "Tyrosine-protein kinase receptor" [Gallus gallus (taxid:9031)]

 Score = 253 (94.1 bits), Expect = 6.6e-20, P = 6.6e-20
 Identities = 43/66 (65%), Positives = 54/66 (81%)

Query:     3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
             RWMAPE L+DG+F++ SDVWAFGVL+WE ++LGQQPYP  +N++VLH+VR GGRL  P N
Sbjct:  2140 RWMAPESLIDGVFTNHSDVWAFGVLVWETLTLGQQPYPGLSNIEVLHHVRSGGRLESPNN 2199

Query:    63 CSHLIR 68
             C   IR
Sbjct:  2200 CPDDIR 2205

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004714 "transmembrane receptor protein tyrosine kinase activity" evidence=IEA

UNIPROTKB|F1NQL9 ROS1 "Tyrosine-protein kinase receptor" [Gallus gallus (taxid:9031)]

 Score = 253 (94.1 bits), Expect = 6.7e-20, P = 6.7e-20
 Identities = 43/66 (65%), Positives = 54/66 (81%)

Query:     3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
             RWMAPE L+DG+F++ SDVWAFGVL+WE ++LGQQPYP  +N++VLH+VR GGRL  P N
Sbjct:  2143 RWMAPESLIDGVFTNHSDVWAFGVLVWETLTLGQQPYPGLSNIEVLHHVRSGGRLESPNN 2202

Query:    63 CSHLIR 68
             C   IR
Sbjct:  2203 CPDDIR 2208

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004714 "transmembrane receptor protein tyrosine kinase activity" evidence=IEA

GO:0002066 "columnar/cuboidal epithelial cell development" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0010629 "negative regulation of gene expression" evidence=IEA

GO:0010966 "regulation of phosphate transport" evidence=IEA

GO:0016049 "cell growth" evidence=IEA

GO:0019903 "protein phosphatase binding" evidence=IEA

GO:0032006 "regulation of TOR signaling cascade" evidence=IEA

GO:0070372 "regulation of ERK1 and ERK2 cascade" evidence=IEA

UNIPROTKB|P08941 ROS1 "Proto-oncogene tyrosine-protein kinase ROS" [Gallus gallus (taxid:9031)]

 Score = 253 (94.1 bits), Expect = 6.7e-20, P = 6.7e-20
 Identities = 43/66 (65%), Positives = 54/66 (81%)

Query:     3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
             RWMAPE L+DG+F++ SDVWAFGVL+WE ++LGQQPYP  +N++VLH+VR GGRL  P N
Sbjct:  2143 RWMAPESLIDGVFTNHSDVWAFGVLVWETLTLGQQPYPGLSNIEVLHHVRSGGRLESPNN 2202

Query:    63 CSHLIR 68
             C   IR
Sbjct:  2203 CPDDIR 2208

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004714 "transmembrane receptor protein tyrosine kinase activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0016049 "cell growth" evidence=ISS

GO:0032006 "regulation of TOR signaling cascade" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=ISS

GO:0002066 "columnar/cuboidal epithelial cell development" evidence=ISS

GO:0008283 "cell proliferation" evidence=ISS

GO:0030154 "cell differentiation" evidence=ISS

GO:0070372 "regulation of ERK1 and ERK2 cascade" evidence=ISS

RGD|3591 Ros1 "c-ros oncogene 1 , receptor tyrosine kinase" [Rattus norvegicus (taxid:10116)]

 Score = 253 (94.1 bits), Expect = 6.8e-20, P = 6.8e-20
 Identities = 42/61 (68%), Positives = 54/61 (88%)

Query:     3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
             RWMAPE L+DG+F+SQSDVW+FG+L+WEI++LG QPYPA +N+DVL+YV+ GGRL  P N
Sbjct:  2118 RWMAPENLMDGIFTSQSDVWSFGILVWEILTLGHQPYPAHSNLDVLNYVQAGGRLEPPRN 2177

Query:    63 C 63
             C
Sbjct:  2178 C 2178

GO:0002066 "columnar/cuboidal epithelial cell development" evidence=ISO;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=ISO;ISS

GO:0004714 "transmembrane receptor protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=ISO;ISS

GO:0007283 "spermatogenesis" evidence=ISO;ISS

GO:0008283 "cell proliferation" evidence=ISO;ISS

GO:0010629 "negative regulation of gene expression" evidence=IEA;ISO

GO:0010966 "regulation of phosphate transport" evidence=IEA;ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0016049 "cell growth" evidence=ISO;ISS

GO:0019903 "protein phosphatase binding" evidence=IEA;ISO

GO:0030154 "cell differentiation" evidence=ISO;ISS

GO:0032006 "regulation of TOR signaling cascade" evidence=ISO;ISS

GO:0070372 "regulation of ERK1 and ERK2 cascade" evidence=ISO;ISS

MGI|MGI:97999 Ros1 "Ros1 proto-oncogene" [Mus musculus (taxid:10090)]

 Score = 253 (94.1 bits), Expect = 6.8e-20, P = 6.8e-20
 Identities = 42/61 (68%), Positives = 54/61 (88%)

Query:     3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
             RWMAPE L+DG+F+SQSDVW+FG+L+WEI++LG QPYPA +N+DVL+YV+ GGRL  P N
Sbjct:  2119 RWMAPENLMDGIFTSQSDVWSFGILVWEILTLGHQPYPAHSNLDVLNYVQAGGRLEPPRN 2178

Query:    63 C 63
             C
Sbjct:  2179 C 2179

GO:0000166 "nucleotide binding" evidence=IEA

GO:0002066 "columnar/cuboidal epithelial cell development" evidence=IMP

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=ISO

GO:0004714 "transmembrane receptor protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA;ISO;IDA

GO:0007165 "signal transduction" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IMP

GO:0008283 "cell proliferation" evidence=IDA

GO:0010629 "negative regulation of gene expression" evidence=IMP

GO:0010966 "regulation of phosphate transport" evidence=IMP

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016049 "cell growth" evidence=ISO

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0019903 "protein phosphatase binding" evidence=ISO;IPI

GO:0030154 "cell differentiation" evidence=IDA

GO:0032006 "regulation of TOR signaling cascade" evidence=ISO

GO:0070372 "regulation of ERK1 and ERK2 cascade" evidence=IDA

UNIPROTKB|I3LEW1 ROS1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 251 (93.4 bits), Expect = 1.1e-19, P = 1.1e-19
 Identities = 41/61 (67%), Positives = 54/61 (88%)

Query:     3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
             RWMAPE L+DG+F++QSDVW+FG+L+WEI++LG QPYPA +N+DVL+YV+ GGRL  P N
Sbjct:  2084 RWMAPESLMDGIFTTQSDVWSFGILIWEILTLGHQPYPAHSNLDVLNYVQTGGRLEPPRN 2143

Query:    63 C 63
             C
Sbjct:  2144 C 2144

GO:0070372 "regulation of ERK1 and ERK2 cascade" evidence=IEA

GO:0032006 "regulation of TOR signaling cascade" evidence=IEA

GO:0019903 "protein phosphatase binding" evidence=IEA

GO:0016049 "cell growth" evidence=IEA

GO:0010966 "regulation of phosphate transport" evidence=IEA

GO:0010629 "negative regulation of gene expression" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0002066 "columnar/cuboidal epithelial cell development" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=IEA

GO:0004714 "transmembrane receptor protein tyrosine kinase activity" evidence=IEA

UNIPROTKB|Q5H8Y1 ROS1 "Proto-oncogene tyrosine-protein kinase ROS" [Homo sapiens (taxid:9606)]

 Score = 251 (93.4 bits), Expect = 1.1e-19, P = 1.1e-19
 Identities = 41/61 (67%), Positives = 54/61 (88%)

Query:     3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
             RWMAPE L+DG+F++QSDVW+FG+L+WEI++LG QPYPA +N+DVL+YV+ GGRL  P N
Sbjct:  2120 RWMAPESLMDGIFTTQSDVWSFGILIWEILTLGHQPYPAHSNLDVLNYVQTGGRLEPPRN 2179

Query:    63 C 63
             C
Sbjct:  2180 C 2180

GO:0004714 "transmembrane receptor protein tyrosine kinase activity" evidence=IEA

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|P08922 ROS1 "Proto-oncogene tyrosine-protein kinase ROS" [Homo sapiens (taxid:9606)]

 Score = 251 (93.4 bits), Expect = 1.1e-19, P = 1.1e-19
 Identities = 41/61 (67%), Positives = 54/61 (88%)

Query:     3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
             RWMAPE L+DG+F++QSDVW+FG+L+WEI++LG QPYPA +N+DVL+YV+ GGRL  P N
Sbjct:  2126 RWMAPESLMDGIFTTQSDVWSFGILIWEILTLGHQPYPAHSNLDVLNYVQTGGRLEPPRN 2185

Query:    63 C 63
             C
Sbjct:  2186 C 2186

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004714 "transmembrane receptor protein tyrosine kinase activity" evidence=IEA

GO:0010629 "negative regulation of gene expression" evidence=IEA

GO:0010966 "regulation of phosphate transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0002066 "columnar/cuboidal epithelial cell development" evidence=ISS

GO:0007283 "spermatogenesis" evidence=ISS

GO:0008283 "cell proliferation" evidence=ISS

GO:0070372 "regulation of ERK1 and ERK2 cascade" evidence=ISS

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0019903 "protein phosphatase binding" evidence=IPI

GO:0032006 "regulation of TOR signaling cascade" evidence=IDA

GO:0016049 "cell growth" evidence=IDA

GO:0004713 "protein tyrosine kinase activity" evidence=IDA

GO:0016020 "membrane" evidence=TAS

GO:0030154 "cell differentiation" evidence=ISS

UNIPROTKB|F1PUF3 ROS1 "Tyrosine-protein kinase receptor" [Canis lupus familiaris (taxid:9615)]

 Score = 247 (92.0 bits), Expect = 3.0e-19, P = 3.0e-19
 Identities = 40/61 (65%), Positives = 53/61 (86%)

Query:     3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
             RWMAPE L+DG+F++QSDVW+FG+L+WEI++LG QPYP  +N+DVL+YV+ GGRL  P N
Sbjct:  2122 RWMAPESLMDGIFTTQSDVWSFGILIWEILTLGHQPYPTHSNLDVLNYVQTGGRLEPPKN 2181

Query:    63 C 63
             C
Sbjct:  2182 C 2182

GO:0004714 "transmembrane receptor protein tyrosine kinase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q63132	ROS1_RAT	2, ., 7, ., 1, 0, ., 1	0.6885	0.6931	0.0260	yes	N/A
P13368	7LESS_DROME	2, ., 7, ., 1, 0, ., 1	0.6323	0.7727	0.0266	yes	N/A
Q78DX7	ROS1_MOUSE	2, ., 7, ., 1, 0, ., 1	0.6885	0.6931	0.0260	yes	N/A
P08941	ROS1_CHICK	2, ., 7, ., 1, 0, ., 1	0.6515	0.75	0.0285	yes	N/A
P08922	ROS1_HUMAN	2, ., 7, ., 1, 0, ., 1	0.6721	0.6931	0.0259	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	88
cd05044	269	cd05044, PTKc_c-ros, Catalytic domain of the Prote	5e-36
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	2e-35
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	1e-34
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	2e-33
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	2e-33
cd05036	277	cd05036, PTKc_ALK_LTK, Catalytic domain of the Pro	2e-27
cd05032	277	cd05032, PTKc_InsR_like, Catalytic domain of Insul	4e-27
cd05035	273	cd05035, PTKc_Axl_like, Catalytic Domain of Axl-li	7e-23
cd05060	257	cd05060, PTKc_Syk_like, Catalytic domain of Spleen	1e-22
cd05061	288	cd05061, PTKc_InsR, Catalytic domain of the Protei	1e-22
cd05053	293	cd05053, PTKc_FGFR, Catalytic domain of the Protei	2e-22
cd05062	277	cd05062, PTKc_IGF-1R, Catalytic domain of the Prot	3e-22
cd05043	280	cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Rece	4e-22
cd05050	288	cd05050, PTKc_Musk, Catalytic domain of the Protei	8e-21
cd05099	314	cd05099, PTKc_FGFR4, Catalytic domain of the Prote	2e-20
cd05100	334	cd05100, PTKc_FGFR3, Catalytic domain of the Prote	2e-20
cd05057	279	cd05057, PTKc_EGFR_like, Catalytic domain of Epide	2e-20
cd05098	307	cd05098, PTKc_FGFR1, Catalytic domain of the Prote	3e-20
cd05045	290	cd05045, PTKc_RET, Catalytic domain of the Protein	3e-20
cd05074	273	cd05074, PTKc_Tyro3, Catalytic domain of the Prote	4e-20
cd05148	261	cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro	5e-20
cd05059	256	cd05059, PTKc_Tec_like, Catalytic domain of Tec-li	6e-20
cd05033	266	cd05033, PTKc_EphR, Catalytic domain of Ephrin Rec	9e-20
cd05101	304	cd05101, PTKc_FGFR2, Catalytic domain of the Prote	1e-19
cd05034	261	cd05034, PTKc_Src_like, Catalytic domain of Src ki	3e-19
cd05075	272	cd05075, PTKc_Axl, Catalytic domain of the Protein	9e-19
cd05041	251	cd05041, PTKc_Fes_like, Catalytic domain of Fes-li	1e-18
cd05113	256	cd05113, PTKc_Btk_Bmx, Catalytic domain of the Pro	2e-18
cd05084	252	cd05084, PTKc_Fes, Catalytic domain of the Protein	3e-18
cd05039	256	cd05039, PTKc_Csk_like, Catalytic domain of C-term	3e-18
cd05049	280	cd05049, PTKc_Trk, Catalytic domain of the Protein	4e-18
cd05072	261	cd05072, PTKc_Lyn, Catalytic domain of the Protein	4e-18
cd05102	338	cd05102, PTKc_VEGFR3, Catalytic domain of the Prot	5e-18
cd05040	257	cd05040, PTKc_Ack_like, Catalytic domain of the Pr	6e-18
cd05083	254	cd05083, PTKc_Chk, Catalytic domain of the Protein	7e-18
cd05048	283	cd05048, PTKc_Ror, Catalytic Domain of the Protein	8e-18
cd05052	263	cd05052, PTKc_Abl, Catalytic domain of the Protein	1e-17
cd05046	275	cd05046, PTK_CCK4, Pseudokinase domain of the Prot	2e-17
cd05056	270	cd05056, PTKc_FAK, Catalytic domain of the Protein	2e-17
cd05115	257	cd05115, PTKc_Zap-70, Catalytic domain of the Prot	3e-17
cd05064	266	cd05064, PTKc_EphR_A10, Catalytic domain of the Pr	3e-17
cd05068	261	cd05068, PTKc_Frk_like, Catalytic domain of Fyn-re	3e-17
cd05051	296	cd05051, PTKc_DDR, Catalytic domain of the Protein	3e-17
cd05116	257	cd05116, PTKc_Syk, Catalytic domain of the Protein	4e-17
cd05054	337	cd05054, PTKc_VEGFR, Catalytic domain of the Prote	4e-17
cd05085	250	cd05085, PTKc_Fer, Catalytic domain of the Protein	7e-17
cd05067	260	cd05067, PTKc_Lck_Blk, Catalytic domain of the Pro	1e-16
cd05066	267	cd05066, PTKc_EphR_A, Catalytic domain of the Prot	1e-16
cd05055	302	cd05055, PTKc_PDGFR, Catalytic domain of the Prote	2e-16
cd05090	283	cd05090, PTKc_Ror1, Catalytic domain of the Protei	2e-16
cd05112	256	cd05112, PTKc_Itk, Catalytic domain of the Protein	2e-16
cd05058	262	cd05058, PTKc_Met_Ron, Catalytic domain of the Pro	3e-16
cd05105	400	cd05105, PTKc_PDGFR_alpha, Catalytic domain of the	9e-16
cd05106	374	cd05106, PTKc_CSF-1R, Catalytic domain of the Prot	1e-15
cd05082	256	cd05082, PTKc_Csk, Catalytic domain of the Protein	1e-15
cd05114	256	cd05114, PTKc_Tec_Rlk, Catalytic domain of the Pro	1e-15
cd05103	343	cd05103, PTKc_VEGFR2, Catalytic domain of the Prot	2e-15
cd05063	268	cd05063, PTKc_EphR_A2, Catalytic domain of the Pro	3e-15
cd05089	297	cd05089, PTKc_Tie1, Catalytic domain of the Protei	4e-15
cd05091	283	cd05091, PTKc_Ror2, Catalytic domain of the Protei	5e-15
cd05065	269	cd05065, PTKc_EphR_B, Catalytic domain of the Prot	8e-15
cd05047	270	cd05047, PTKc_Tie, Catalytic domain of Tie Protein	1e-14
cd05092	280	cd05092, PTKc_TrkA, Catalytic domain of the Protei	1e-14
cd05107	401	cd05107, PTKc_PDGFR_beta, Catalytic domain of the	2e-14
cd05088	303	cd05088, PTKc_Tie2, Catalytic domain of the Protei	2e-14
cd05096	304	cd05096, PTKc_DDR1, Catalytic domain of the Protei	2e-14
cd05073	260	cd05073, PTKc_Hck, Catalytic domain of the Protein	2e-14
cd05094	291	cd05094, PTKc_TrkC, Catalytic domain of the Protei	3e-14
cd05038	284	cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai	4e-14
cd05069	260	cd05069, PTKc_Yes, Catalytic domain of the Protein	6e-14
cd05093	288	cd05093, PTKc_TrkB, Catalytic domain of the Protei	9e-14
cd05070	260	cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Pro	2e-13
cd05104	375	cd05104, PTKc_Kit, Catalytic domain of the Protein	2e-13
cd05071	262	cd05071, PTKc_Src, Catalytic domain of the Protein	6e-13
cd05109	279	cd05109, PTKc_HER2, Catalytic domain of the Protei	8e-13
cd05111	279	cd05111, PTK_HER3, Pseudokinase domain of the Prot	1e-12
cd05110	303	cd05110, PTKc_HER4, Catalytic domain of the Protei	9e-12
cd05095	296	cd05095, PTKc_DDR2, Catalytic domain of the Protei	3e-11
cd05108	316	cd05108, PTKc_EGFR, Catalytic domain of the Protei	4e-11
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	1e-10
cd05097	295	cd05097, PTKc_DDR_like, Catalytic domain of Discoi	2e-10
cd05086	268	cd05086, PTKc_Aatyk2, Catalytic domain of the Prot	1e-09
cd05042	269	cd05042, PTKc_Aatyk, Catalytic domain of the Prote	2e-09
cd05087	269	cd05087, PTKc_Aatyk1_Aatyk3, Catalytic domain of t	3e-09
cd05079	284	cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) doma	4e-09
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	1e-08
cd05081	284	cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2)	5e-08
cd05080	283	cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) doma	6e-08
cd06628	267	cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain o	9e-08
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	3e-07
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	3e-07
cd07831	282	cd07831, STKc_MOK, Catalytic domain of the Serine/	9e-07
cd05037	259	cd05037, PTK_Jak_rpt1, Pseudokinase (repeat 1) dom	2e-06
cd07847	286	cd07847, STKc_CDKL1_4, Catalytic domain of the Ser	3e-06
cd05589	324	cd05589, STKc_PKN, Catalytic domain of the Protein	4e-06
cd05078	258	cd05078, PTK_Jak2_Jak3_rpt1, Pseudokinase (repeat	6e-06
cd05077	262	cd05077, PTK_Jak1_rpt1, Pseudokinase (repeat 1) do	6e-06
cd05570	318	cd05570, STKc_PKC, Catalytic domain of the Protein	6e-06
cd05076	274	cd05076, PTK_Tyk2_rpt1, Pseudokinase (repeat 1) do	1e-05
cd05619	316	cd05619, STKc_nPKC_theta, Catalytic domain of the	2e-05
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	2e-05
cd08530	256	cd08530, STKc_CNK2-like, Catalytic domain of the P	2e-05
cd05592	316	cd05592, STKc_nPKC_theta_delta, Catalytic domain o	3e-05
cd06605	265	cd06605, PKc_MAPKK, Catalytic domain of the dual-s	4e-05
cd05581	280	cd05581, STKc_PDK1, Catalytic domain of the Protei	4e-05
cd08217	265	cd08217, STKc_Nek2, Catalytic domain of the Protei	7e-05
cd07846	286	cd07846, STKc_CDKL2_3, Catalytic domain of the Ser	7e-05
cd06659	297	cd06659, STKc_PAK6, Catalytic domain of the Protei	8e-05
cd05590	320	cd05590, STKc_nPKC_eta, Catalytic domain of the Pr	9e-05
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	1e-04
cd06615	308	cd06615, PKc_MEK, Catalytic domain of the dual-spe	1e-04
cd08529	256	cd08529, STKc_FA2-like, Catalytic domain of the Pr	1e-04
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	2e-04
cd05577	277	cd05577, STKc_GRK, Catalytic domain of the Protein	2e-04
cd05591	321	cd05591, STKc_nPKC_epsilon, Catalytic domain of th	2e-04
cd06655	296	cd06655, STKc_PAK2, Catalytic domain of the Protei	2e-04
cd05620	316	cd05620, STKc_nPKC_delta, Catalytic domain of the	2e-04
cd06654	296	cd06654, STKc_PAK1, Catalytic domain of the Protei	2e-04
cd05578	258	cd05578, STKc_Yank1, Catalytic domain of the Prote	4e-04
cd06656	297	cd06656, STKc_PAK3, Catalytic domain of the Protei	5e-04
cd06631	265	cd06631, STKc_YSK4, Catalytic domain of the Protei	5e-04
cd06641	277	cd06641, STKc_MST3, Catalytic domain of the Protei	6e-04
cd06917	277	cd06917, STKc_NAK1_like, Catalytic domain of Funga	6e-04
cd06640	277	cd06640, STKc_MST4, Catalytic domain of the Protei	7e-04
cd06622	286	cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of	8e-04
cd06619	279	cd06619, PKc_MKK5, Catalytic domain of the dual-sp	8e-04
cd07833	288	cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dep	0.001
cd05587	324	cd05587, STKc_cPKC, Catalytic domain of the Protei	0.001
cd05616	323	cd05616, STKc_cPKC_beta, Catalytic domain of the P	0.001
cd06648	285	cd06648, STKc_PAK_II, Catalytic domain of the Prot	0.002
cd05630	285	cd05630, STKc_GRK6, Catalytic domain of the Protei	0.002
cd06650	333	cd06650, PKc_MEK1, Catalytic domain of the dual-sp	0.002
cd06616	288	cd06616, PKc_MKK4, Catalytic domain of the dual-sp	0.003
cd05123	250	cd05123, STKc_AGC, Catalytic domain of AGC family	0.003
cd06621	287	cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of	0.003
cd05625	382	cd05625, STKc_LATS1, Catalytic domain of the Prote	0.003
cd05586	330	cd05586, STKc_Sck1_like, Catalytic domain of Suppr	0.003
cd05632	285	cd05632, STKc_GRK5, Catalytic domain of the Protei	0.003
cd05615	323	cd05615, STKc_cPKC_alpha, Catalytic domain of the	0.003
cd07830	283	cd07830, STKc_MAK_like, Catalytic domain of Male g	0.004
cd06647	293	cd06647, STKc_PAK_I, Catalytic domain of the Prote	0.004
cd06649	331	cd06649, PKc_MEK2, Catalytic domain of the dual-sp	0.004
PTZ00267	478	PTZ00267, PTZ00267, NIMA-related protein kinase; P	0.004

>gnl|CDD|173630 cd05044, PTKc_c-ros, Catalytic domain of the Protein Tyrosine Kinase, C-ros

 Score =  121 bits (306), Expect = 5e-36
 Identities = 42/67 (62%), Positives = 52/67 (77%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RWMAPE L+DG F++QSDVW+FGVL+WEI++LGQQPYPA  N +VL +V  GGRL +P N
Sbjct: 178 RWMAPESLLDGKFTTQSDVWSFGVLMWEILTLGQQPYPALNNQEVLQHVTAGGRLQKPEN 237

Query: 63  CSHLIRS 69
           C   I  
Sbjct: 238 CPDKIYQ 244

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male mice bearing inactive mutations of c-ros lack the initial segment of the epididymis and are infertile. The Drosophila protein, Sevenless, is required for the specification of the R7 photoreceptor cell during eye development. Length = 269

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score =  120 bits (303), Expect = 2e-35
 Identities = 38/65 (58%), Positives = 48/65 (73%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RWMAPE L DG+F+S+SDVW+FGVLLWEI +LG  PYP  +N +VL Y+R G RL +P  
Sbjct: 172 RWMAPESLKDGIFTSKSDVWSFGVLLWEIFTLGATPYPGLSNEEVLEYLRKGYRLPKPEY 231

Query: 63  CSHLI 67
           C   +
Sbjct: 232 CPDEL 236

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score =  118 bits (298), Expect = 1e-34
 Identities = 38/62 (61%), Positives = 47/62 (75%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMAPE L DG F+S+SDVW+FGVLLWEI +LG+QPYP  +N +VL  +  G RL RP N
Sbjct: 169 KWMAPESLKDGKFTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLELLEDGYRLPRPEN 228

Query: 63  CS 64
           C 
Sbjct: 229 CP 230

Length = 258

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score =  114 bits (289), Expect = 2e-33
 Identities = 38/62 (61%), Positives = 49/62 (79%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RWMAPE L +G F+S+SDVW+FGVLLWEI +LG+QPYP  +N +VL Y++ G RL +P N
Sbjct: 168 RWMAPESLKEGKFTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEYLKNGYRLPQPPN 227

Query: 63  CS 64
           C 
Sbjct: 228 CP 229

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score =  114 bits (288), Expect = 2e-33
 Identities = 37/62 (59%), Positives = 49/62 (79%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RWMAPE L +G F+S+SDVW+FGVLLWEI +LG++PYP  +N +VL Y++ G RL +P N
Sbjct: 169 RWMAPESLKEGKFTSKSDVWSFGVLLWEIFTLGEEPYPGMSNAEVLEYLKKGYRLPKPPN 228

Query: 63  CS 64
           C 
Sbjct: 229 CP 230

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|133168 cd05036, PTKc_ALK_LTK, Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

 Score = 99.8 bits (249), Expect = 2e-27
 Identities = 37/61 (60%), Positives = 48/61 (78%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WM PE  +DG+F+S++DVW+FGVLLWEI SLG  PYP RTN +V+ +V GGGRL+ P  
Sbjct: 186 KWMPPEAFLDGIFTSKTDVWSFGVLLWEIFSLGYMPYPGRTNQEVMEFVTGGGRLDPPKG 245

Query: 63  C 63
           C
Sbjct: 246 C 246

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well as visceral muscle differentiation in Drosophila. ALK is aberrantly expressed as fusion proteins, due to chromosomal translocations, in about 60% of anaplastic large cell lymphomas (ALCLs). ALK fusion proteins are also found in rare cases of diffuse large B cell lymphomas (DLBCLs). LTK is mainly expressed in B lymphocytes and neuronal tissues. It is important in cell proliferation and survival. Transgenic mice expressing TLK display retarded growth and high mortality rate. In addition, a polymorphism in mouse and human LTK is implicated in the pathogenesis of systemic lupus erythematosus. Length = 277

>gnl|CDD|173625 cd05032, PTKc_InsR_like, Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

 Score = 99.3 bits (248), Expect = 4e-27
 Identities = 34/61 (55%), Positives = 47/61 (77%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RWMAPE L DG+F+++SDVW+FGV+LWE+ +L +QPY   +N +VL +V  GG L+ P N
Sbjct: 186 RWMAPESLKDGVFTTKSDVWSFGVVLWEMATLAEQPYQGLSNEEVLKFVIDGGHLDLPEN 245

Query: 63  C 63
           C
Sbjct: 246 C 246

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR and IGF-1R, which share 84% sequence identity in their kinase domains, display physiologically distinct yet overlapping functions in cell growth, differentiation, and metabolism. InsR activation leads primarily to metabolic effects while IGF-1R activation stimulates mitogenic pathways. In cells expressing both receptors, InsR/IGF-1R hybrids are found together with classical receptors. Both receptors can interact with common adaptor molecules such as IRS-1 and IRS-2. Length = 277

>gnl|CDD|133167 cd05035, PTKc_Axl_like, Catalytic Domain of Axl-like Protein Tyrosine Kinases

 Score = 87.9 bits (218), Expect = 7e-23
 Identities = 30/61 (49%), Positives = 43/61 (70%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W+A E L D +++S+SDVWAFGV +WEI + GQ PYP   N ++  Y+R G RL +P +
Sbjct: 180 KWIAIESLADRVYTSKSDVWAFGVTMWEIATRGQTPYPGVENHEIYDYLRHGNRLKQPED 239

Query: 63  C 63
           C
Sbjct: 240 C 240

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellular effects including survival, proliferation, migration, and phagocytosis. They are also associated with several types of cancer as well as inflammatory, autoimmune, vascular, and kidney diseases. Mer is named after its original reported expression pattern (monocytes, epithelial, and reproductive tissues). It is required for the ingestion of apoptotic cells by phagocytes such as macrophages, retinal pigment epithelial cells, and dendritic cells. Mer is also important in maintaining immune homeostasis. Length = 273

>gnl|CDD|133191 cd05060, PTKc_Syk_like, Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

 Score = 87.4 bits (217), Expect = 1e-22
 Identities = 29/62 (46%), Positives = 38/62 (61%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APEC+  G FSS+SDVW++GV LWE  S G +PY      +V+  +  G RL RP  
Sbjct: 163 KWYAPECINYGKFSSKSDVWSYGVTLWEAFSYGAKPYGEMKGAEVIAMLESGERLPRPEE 222

Query: 63  CS 64
           C 
Sbjct: 223 CP 224

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. Syk is important in B-cell receptor (BCR) signaling, while Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Syk also plays a central role in Fc receptor-mediated phagocytosis in the adaptive immune system. Shark is exclusively expressed in ectodermally derived epithelia, and is localized preferentially to the apical surface of the epithelial cells, it may play a role in a signaling pathway for epithelial cell polarity. Length = 257

>gnl|CDD|133192 cd05061, PTKc_InsR, Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

 Score = 87.7 bits (217), Expect = 1e-22
 Identities = 35/67 (52%), Positives = 47/67 (70%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RWMAPE L DG+F++ SD+W+FGV+LWEI SL +QPY   +N  VL +V  GG L++P N
Sbjct: 186 RWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFVMDGGYLDQPDN 245

Query: 63  CSHLIRS 69
           C   +  
Sbjct: 246 CPERVTD 252

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein metabolism, ion and amino acid transport, cell cycle and proliferation, cell differentiation, gene transcription, and nitric oxide synthesis. Insulin resistance, caused by abnormalities in InsR signaling, has been described in diabetes, hypertension, cardiovascular disease, metabolic syndrome, heart failure, and female infertility. Length = 288

>gnl|CDD|173634 cd05053, PTKc_FGFR, Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

 Score = 87.1 bits (216), Expect = 2e-22
 Identities = 30/63 (47%), Positives = 43/63 (68%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMAPE L D +++ QSDVW+FGVLLWEI +LG  PYP     ++   ++ G R+ +P N
Sbjct: 199 KWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPVEELFKLLKEGYRMEKPQN 258

Query: 63  CSH 65
           C+ 
Sbjct: 259 CTQ 261

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation, and intracellular signaling. There are at least 23 FGFs and four types of FGFRs. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. FGF/FGFR signaling is important in the regulation of embryonic development, homeostasis, and regenerative processes. Depending on the cell type and stage, FGFR signaling produces diverse cellular responses including proliferation, growth arrest, differentiation, and apoptosis. Aberrant signaling leads to many human diseases such as skeletal, olfactory, and metabolic disorders, as well as cancer. Length = 293

>gnl|CDD|133193 cd05062, PTKc_IGF-1R, Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

 Score = 86.6 bits (214), Expect = 3e-22
 Identities = 36/77 (46%), Positives = 51/77 (66%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RWM+PE L DG+F++ SDVW+FGV+LWEI +L +QPY   +N  VL +V  GG L++P N
Sbjct: 186 RWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGMSNEQVLRFVMEGGLLDKPDN 245

Query: 63  CSHLIRSRNRLTENKAP 79
           C  ++    R+     P
Sbjct: 246 CPDMLFELMRMCWQYNP 262

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, where it is frequently overexpressed, IGF-1R is implicated in proliferation, the suppression of apoptosis, invasion, and metastasis. IGF-1R is being developed as a therapeutic target in cancer treatment. Length = 277

>gnl|CDD|133175 cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

 Score = 86.3 bits (214), Expect = 4e-22
 Identities = 32/61 (52%), Positives = 43/61 (70%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMA E LV+  +SS SDVW+FGVLLWE+M+LGQ PY      ++  Y++ G RL +P N
Sbjct: 184 KWMALESLVNKEYSSASDVWSFGVLLWELMTLGQTPYVEIDPFEMAAYLKDGYRLAQPIN 243

Query: 63  C 63
           C
Sbjct: 244 C 244

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It acts as a chemorepulsive axon guidance receptor of Wnt glycoproteins and is responsible for the establishment of axon tracts during the development of the central nervous system. In addition, studies in mice reveal that Ryk is essential in skeletal, craniofacial, and cardiac development. Thus, it appears Ryk is involved in signal transduction despite its lack of kinase activity. Ryk may function as an accessory protein that modulates the signals coming from catalytically active partner RTKs such as the Eph receptors. Length = 280

>gnl|CDD|133181 cd05050, PTKc_Musk, Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

 Score = 82.6 bits (204), Expect = 8e-21
 Identities = 35/78 (44%), Positives = 50/78 (64%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RWM PE +    ++++SDVWA+GV+LWEI S G QPY    + +V++YVR G  L+ P N
Sbjct: 197 RWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGMQPYYGMAHEEVIYYVRDGNVLSCPDN 256

Query: 63  CSHLIRSRNRLTENKAPS 80
           C   + +  RL  +K PS
Sbjct: 257 CPLELYNLMRLCWSKLPS 274

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates Musk autophosphorylation and activation, leading to the clustering of acetylcholine receptors (AChRs). To date, there is no evidence to suggest that agrin binds directly to Musk. Mutations in AChR, Musk and other partners are responsible for diseases of the NMJ, such as the autoimmune syndrome myasthenia gravis. Length = 288

>gnl|CDD|133230 cd05099, PTKc_FGFR4, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

 Score = 82.3 bits (203), Expect = 2e-20
 Identities = 32/78 (41%), Positives = 51/78 (65%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMAPE L D +++ QSDVW+FG+L+WEI +LG  PYP     ++   +R G R+++P+N
Sbjct: 201 KWMAPEALFDRVYTHQSDVWSFGILMWEIFTLGGSPYPGIPVEELFKLLREGHRMDKPSN 260

Query: 63  CSHLIRSRNRLTENKAPS 80
           C+H +    R   +  P+
Sbjct: 261 CTHELYMLMRECWHAVPT 278

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Unlike other FGFRs, there is only one splice form of FGFR4. It binds FGF1, FGF2, FGF6, FGF19, and FGF23. FGF19 is a selective ligand for FGFR4. Although disruption of FGFR4 in mice causes no obvious phenotype, in vivo inhibition of FGFR4 in cultured skeletal muscle cells resulted in an arrest of muscle progenitor differentiation. FGF6 and FGFR4 are uniquely expressed in myofibers and satellite cells. FGF6/FGFR4 signaling appears to play a key role in the regulation of muscle regeneration. A polymorphism in FGFR4 is found in head and neck squamous cell carcinoma. Length = 314

>gnl|CDD|173652 cd05100, PTKc_FGFR3, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

 Score = 82.4 bits (203), Expect = 2e-20
 Identities = 32/63 (50%), Positives = 46/63 (73%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMAPE L D +++ QSDVW+FGVLLWEI +LG  PYP     ++   ++ G R+++PAN
Sbjct: 201 KWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPVEELFKLLKEGHRMDKPAN 260

Query: 63  CSH 65
           C+H
Sbjct: 261 CTH 263

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Many FGFR3 splice variants have been reported with the IIIb and IIIc isoforms being the predominant forms. FGFR3 IIIc is the isoform expressed in chondrocytes, the cells affected in dwarfism, while IIIb is expressed in epithelial cells. FGFR3 ligands include FGF1, FGF2, FGF4, FGF8, FGF9, and FGF23. It is a negative regulator of long bone growth. In the cochlear duct and in the lens, FGFR3 is involved in differentiation while it appears to have a role in cell proliferation in epithelial cells. Germline mutations in FGFR3 are associated with skeletal disorders including several forms of dwarfism. Some missense mutations are associated with multiple myeloma and carcinomas of the bladder and cervix. Overexpression of FGFR3 is found in thyroid carcinoma. Length = 334

>gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

 Score = 81.7 bits (202), Expect = 2e-20
 Identities = 22/62 (35%), Positives = 40/62 (64%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMA E ++  +++ +SDVW++GV +WE+M+ G +PY     V++   +  G RL +P  
Sbjct: 176 KWMALESILHRIYTHKSDVWSYGVTVWELMTFGAKPYEGIPAVEIPDLLEKGERLPQPPI 235

Query: 63  CS 64
           C+
Sbjct: 236 CT 237

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, resulting in the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Collectively, they can recognize a variety of ligands including EGF, TGFalpha, and neuregulins, among others. All four subfamily members can form homo- or heterodimers. HER3 contains an impaired kinase domain and depends on its heterodimerization partner for activation. EGFR subfamily members are involved in signaling pathways leading to a broad range of cellular responses including cell proliferation, differentiation, migration, growth inhibition, and apoptosis. Gain of function alterations, through their overexpression, deletions, or point mutations in their kinase domains, have been implicated in various cancers. These receptors are targets of many small molecule inhibitors and monoclonal antibodies used in cancer therapy. Length = 279

>gnl|CDD|133229 cd05098, PTKc_FGFR1, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

 Score = 81.6 bits (201), Expect = 3e-20
 Identities = 30/63 (47%), Positives = 46/63 (73%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMAPE L D +++ QSDVW+FGVLLWEI +LG  PYP     ++   ++ G R+++P+N
Sbjct: 207 KWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSN 266

Query: 63  CSH 65
           C++
Sbjct: 267 CTN 269

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Alternative splicing of FGFR1 transcripts produces a variety of isoforms, which are differentially expressed in cells. FGFR1 binds the ligands, FGF1 and FGF2, with high affinity and has also been reported to bind FGF4, FGF6, and FGF9. FGFR1 signaling is critical in the control of cell migration during embryo development. It promotes cell proliferation in fibroblasts. Nuclear FGFR1 plays a role in the regulation of transcription. Mutations, insertions or deletions of FGFR1 have been identified in patients with Kallman's syndrome (KS), an inherited disorder characterized by hypogonadotropic hypogonadism and loss of olfaction. Aberrant FGFR1 expression has been found in some human cancers including 8P11 myeloproliferative syndrome (EMS), breast cancer, and pancreatic adenocarcinoma. Length = 307

>gnl|CDD|173631 cd05045, PTKc_RET, Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

 Score = 81.2 bits (200), Expect = 3e-20
 Identities = 31/62 (50%), Positives = 44/62 (70%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMA E L D ++++QSDVW+FGVLLWEI++LG  PYP      + + ++ G R+ RP N
Sbjct: 194 KWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIAPERLFNLLKTGYRMERPEN 253

Query: 63  CS 64
           CS
Sbjct: 254 CS 255

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leading to autophosphorylation, activation, and intracellular signaling. RET is essential for the development of the sympathetic, parasympathetic and enteric nervous systems, and the kidney. RET disruption by germline mutations causes diseases in humans including congenital aganglionosis of the gastrointestinal tract (Hirschsprung's disease) and three related inherited cancers: multiple endocrine neoplasia type 2A (MEN2A), MEN2B, and familial medullary thyroid carcinoma (FMTC). Length = 290

>gnl|CDD|133205 cd05074, PTKc_Tyro3, Catalytic domain of the Protein Tyrosine Kinase, Tyro3

 Score = 80.7 bits (199), Expect = 4e-20
 Identities = 28/61 (45%), Positives = 42/61 (68%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W+A E L D ++++ SDVWAFGV +WEIM+ GQ PY    N ++ +Y+  G RL +P +
Sbjct: 180 KWLALESLADNVYTTHSDVWAFGVTMWEIMTRGQTPYAGVENSEIYNYLIKGNRLKQPPD 239

Query: 63  C 63
           C
Sbjct: 240 C 240

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic factor. It is also expressed in osteoclasts and has a role in bone resorption. Length = 273

>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

 Score = 80.2 bits (198), Expect = 5e-20
 Identities = 29/65 (44%), Positives = 40/65 (61%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE    G FS++SDVW+FG+LL+E+ + GQ PYP   N +V   +  G R+  PA 
Sbjct: 169 KWTAPEAASHGTFSTKSDVWSFGILLYEMFTYGQVPYPGMNNHEVYDQITAGYRMPCPAK 228

Query: 63  CSHLI 67
           C   I
Sbjct: 229 CPQEI 233

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261

>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein Tyrosine Kinases

 Score = 80.2 bits (198), Expect = 6e-20
 Identities = 28/62 (45%), Positives = 37/62 (59%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W  PE      FSS+SDVW+FGVL+WE+ S G+ PY   +N +V+  V  G RL RP  
Sbjct: 166 KWAPPEVFDYSRFSSKSDVWSFGVLMWEVFSEGKMPYERFSNSEVVESVSAGYRLYRPKL 225

Query: 63  CS 64
             
Sbjct: 226 AP 227

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases form the second largest subfamily of nRTKs and are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. Mutations in Btk cause the severe B-cell immunodeficiency, X-linked agammaglobulinaemia (XLA). Length = 256

>gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

 Score = 79.7 bits (197), Expect = 9e-20
 Identities = 29/61 (47%), Positives = 41/61 (67%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RW APE +    F+S SDVW+FG+++WE+MS G++PY   +N DV+  V  G RL  P +
Sbjct: 173 RWTAPEAIAYRKFTSASDVWSFGIVMWEVMSYGERPYWDMSNQDVIKAVEDGYRLPPPMD 232

Query: 63  C 63
           C
Sbjct: 233 C 233

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. This allows ephrin/EphR dimers to form, leading to the activation of the intracellular tyr kinase domain. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). The main effect of ephrin/EphR interaction is cell-cell repulsion or adhesion. Ephrin/EphR signaling is important in neural development and plasticity, cell morphogenesis and proliferation, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|133232 cd05101, PTKc_FGFR2, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

 Score = 79.7 bits (196), Expect = 1e-19
 Identities = 30/63 (47%), Positives = 46/63 (73%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMAPE L D +++ QSDVW+FGVL+WEI +LG  PYP     ++   ++ G R+++PAN
Sbjct: 204 KWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLLKEGHRMDKPAN 263

Query: 63  CSH 65
           C++
Sbjct: 264 CTN 266

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. There are many splice variants of FGFR2 which show differential expression and binding to FGF ligands. Disruption of either FGFR2 or FGFR2b is lethal in mice, due to defects in the placenta or severe impairment of tissue development including lung, limb, and thyroid, respectively. Disruption of FGFR2c in mice results in defective bone and skull development. Genetic alterations of FGFR2 are associated with many human skeletal disorders including Apert syndrome, Crouzon syndrome, Jackson-Weiss syndrome, and Pfeiffer syndrome. Length = 304

>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein Tyrosine Kinases

 Score = 78.1 bits (193), Expect = 3e-19
 Identities = 31/61 (50%), Positives = 41/61 (67%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE    G F+ +SDVW+FG+LL EI++ G+ PYP  TN +VL  V  G R+ RP N
Sbjct: 169 KWTAPEAANYGRFTIKSDVWSFGILLTEIVTYGRVPYPGMTNREVLEQVERGYRMPRPPN 228

Query: 63  C 63
           C
Sbjct: 229 C 229

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. Length = 261

>gnl|CDD|173642 cd05075, PTKc_Axl, Catalytic domain of the Protein Tyrosine Kinase, Axl

 Score = 77.4 bits (190), Expect = 9e-19
 Identities = 28/61 (45%), Positives = 43/61 (70%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W+A E L D +++++SDVW+FGV +WEI + GQ PYP   N ++  Y+R G RL +P +
Sbjct: 179 KWIAIESLADRVYTTKSDVWSFGVTMWEIATRGQTPYPGVENSEIYDYLRQGNRLKQPPD 238

Query: 63  C 63
           C
Sbjct: 239 C 239

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transformed cells. Axl signaling is important in many cellular functions such as survival, anti-apoptosis, proliferation, migration, and adhesion. Axl was originally isolated from patients with chronic myelogenous leukemia and a chronic myeloproliferative disorder. Axl is overexpressed in many human cancers including colon, squamous cell, thyroid, breast, and lung carcinomas. Length = 272

>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases

 Score = 76.7 bits (189), Expect = 1e-18
 Identities = 28/66 (42%), Positives = 38/66 (57%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE L  G ++S+SDVW++G+LLWE  SLG  PYP  +N      +  G R+  P  
Sbjct: 160 KWTAPEALNYGRYTSESDVWSYGILLWETFSLGDTPYPGMSNQQTRERIESGYRMPAPQL 219

Query: 63  CSHLIR 68
           C   I 
Sbjct: 220 CPEEIY 225

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251

>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

 Score = 75.7 bits (186), Expect = 2e-18
 Identities = 32/65 (49%), Positives = 40/65 (61%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RW  PE L+   FSS+SDVWAFGVL+WE+ SLG+ PY    N + +  V  G RL RP  
Sbjct: 166 RWSPPEVLLYSKFSSKSDVWAFGVLMWEVYSLGKMPYERFNNSETVEKVSQGLRLYRPHL 225

Query: 63  CSHLI 67
            S  +
Sbjct: 226 ASEKV 230

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Btk contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. Bmx is primarily expressed in bone marrow and the arterial endothelium, and plays an important role in ischemia-induced angiogenesis. It facilitates arterial growth, capillary formation, vessel maturation, and bone marrow-derived endothelial progenitor cell mobilization. Length = 256

>gnl|CDD|173645 cd05084, PTKc_Fes, Catalytic domain of the Protein Tyrosine Kinase, Fes

 Score = 75.8 bits (186), Expect = 3e-18
 Identities = 29/61 (47%), Positives = 36/61 (59%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE L  G +SS+SDVW+FG+LLWE  SLG  PY   +N      +  G RL  P  
Sbjct: 161 KWTAPEALNYGRYSSESDVWSFGILLWEAFSLGAVPYANLSNQQTREAIEQGVRLPCPEL 220

Query: 63  C 63
           C
Sbjct: 221 C 221

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells. It plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. A recent study implicates Fes kinase as a tumor suppressor in colorectal cancer. Length = 252

>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

 Score = 75.5 bits (186), Expect = 3e-18
 Identities = 30/61 (49%), Positives = 40/61 (65%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE L +  FS++SDVW+FG+LLWEI S G+ PYP     DV+ +V  G R+  P  
Sbjct: 164 KWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPHVEKGYRMEAPEG 223

Query: 63  C 63
           C
Sbjct: 224 C 224

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256

>gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

 Score = 75.6 bits (186), Expect = 4e-18
 Identities = 27/61 (44%), Positives = 41/61 (67%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RWM PE ++   F+++SDVW+FGV+LWEI + G+QP+   +N +V+  +  G  L RP  
Sbjct: 189 RWMPPESIMYRKFTTESDVWSFGVVLWEIFTYGKQPWYGLSNEEVIECITQGRLLQRPRT 248

Query: 63  C 63
           C
Sbjct: 249 C 249

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalytic domain. Trk receptors are mainly expressed in the peripheral and central nervous systems. They play important roles in cell fate determination, neuronal survival and differentiation, as well as in the regulation of synaptic plasticity. Altered expression of Trk receptors is associated with many human diseases. Length = 280

>gnl|CDD|173641 cd05072, PTKc_Lyn, Catalytic domain of the Protein Tyrosine Kinase, Lyn

 Score = 75.4 bits (185), Expect = 4e-18
 Identities = 28/61 (45%), Positives = 43/61 (70%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE +  G F+ +SDVW+FG+LL+EI++ G+ PYP  +N DV+  ++ G R+ R  N
Sbjct: 169 KWTAPEAINFGSFTIKSDVWSFGILLYEIVTYGKIPYPGMSNSDVMSALQRGYRMPRMEN 228

Query: 63  C 63
           C
Sbjct: 229 C 229

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lyn is expressed in B lymphocytes and myeloid cells. It exhibits both positive and negative regulatory roles in B cell receptor (BCR) signaling. Lyn, as well as Fyn and Blk, promotes B cell activation by phosphorylating ITAMs (immunoreceptor tyr activation motifs) in CD19 and in Ig components of BCR. It negatively regulates signaling by its unique ability to phosphorylate ITIMs (immunoreceptor tyr inhibition motifs) in cell surface receptors like CD22 and CD5. Lyn also plays an important role in G-CSF receptor signaling by phosphorylating a variety of adaptor molecules. Length = 261

>gnl|CDD|133233 cd05102, PTKc_VEGFR3, Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

 Score = 75.8 bits (186), Expect = 5e-18
 Identities = 31/67 (46%), Positives = 44/67 (65%), Gaps = 1/67 (1%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPA-RTNVDVLHYVRGGGRLNRPA 61
           +WMAPE + D ++++QSDVW+FGVLLWEI SLG  PYP  + N +    ++ G R+  P 
Sbjct: 241 KWMAPESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQINEEFCQRLKDGTRMRAPE 300

Query: 62  NCSHLIR 68
           N +  I 
Sbjct: 301 NATPEIY 307

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. VEGFR3 preferentially binds the ligands VEGFC and VEGFD. VEGFR3 is essential for lymphatic endothelial cell (EC) development and function. It has been shown to regulate adaptive immunity during corneal transplantation. VEGFR3 is upregulated on blood vascular ECs in pathological conditions such as vascular tumors and the periphery of solid tumors. It plays a role in cancer progression and lymph node metastasis. Missense mutations in the VEGFR3 gene are associated with primary human lymphedema. Length = 338

>gnl|CDD|133172 cd05040, PTKc_Ack_like, Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

 Score = 74.7 bits (184), Expect = 6e-18
 Identities = 26/62 (41%), Positives = 35/62 (56%), Gaps = 1/62 (1%)

Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYV-RGGGRLNRPAN 62
           W APE L    FS  SDVW FGV LWE+ + G++P+   +   +L  + + G RL RP  
Sbjct: 166 WCAPESLRTRTFSHASDVWMFGVTLWEMFTYGEEPWAGLSGSQILKKIDKEGERLERPEA 225

Query: 63  CS 64
           C 
Sbjct: 226 CP 227

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with androgen-independent prostate cancer progression. Tnk1 regulates TNFalpha signaling and may play an important role in cell death. Length = 257

>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

 Score = 74.6 bits (183), Expect = 7e-18
 Identities = 29/61 (47%), Positives = 38/61 (62%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE L    FSS+SDVW++GVLLWE+ S G+ PYP  +  +V   V  G R+  P  
Sbjct: 162 KWTAPEALKHKKFSSKSDVWSYGVLLWEVFSYGRAPYPKMSLKEVKECVEKGYRMEPPEG 221

Query: 63  C 63
           C
Sbjct: 222 C 222

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As a negative regulator of Src kinases, Chk may play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Chk is expressed in brain and hematopoietic cells. Studies in mice reveal that Chk is not functionally redundant with Csk and that it plays an important role as a regulator of immune responses. Chk also plays a role in neural differentiation in a manner independent of Src by enhancing Mapk activation via Ras-mediated signaling. Length = 254

>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

 Score = 74.8 bits (184), Expect = 8e-18
 Identities = 28/61 (45%), Positives = 41/61 (67%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RWM PE ++ G F+++SD+W+FGV+LWEI S G QPY   +N +V+  +R    L  P +
Sbjct: 191 RWMPPEAILYGKFTTESDIWSFGVVLWEIFSYGLQPYYGFSNQEVIEMIRSRQLLPCPED 250

Query: 63  C 63
           C
Sbjct: 251 C 251

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. They play important roles in bone and heart formation. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Drosophila Ror is expressed only in the developing nervous system during neurite outgrowth and neuronal differentiation, suggesting a role for Drosophila Ror in neural development. More recently, mouse Ror1 and Ror2 have also been found to play an important role in regulating neurite growth in central neurons. Ror1 and Ror2 are believed to have some overlapping and redundant functions. Length = 283

>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

 Score = 74.1 bits (182), Expect = 1e-17
 Identities = 30/61 (49%), Positives = 35/61 (57%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE L    FS +SDVWAFGVLLWEI + G  PYP      V   +  G R+ RP  
Sbjct: 170 KWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKGYRMERPEG 229

Query: 63  C 63
           C
Sbjct: 230 C 230

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively active and associates into tetramers, resulting in a hyperactive kinase sending a continuous signal. This leads to uncontrolled proliferation, morphological transformation and anti-apoptotic effects. BCR-Abl is the target of selective inhibitors, such as imatinib (Gleevec), used in the treatment of CML. Abl2, also known as ARG (Abelson-related gene), is thought to play a cooperative role with Abl in the proper development of the nervous system. The Tel-ARG fusion protein, resulting from reciprocal translocation between chromosomes 1 and 12, is associated with acute myeloid leukemia (AML). The TEL gene is a frequent fusion partner of other tyr kinase oncogenes, including Tel/Abl, Tel/PDGFRbeta, and Tel/Jak2, found in patients with leukemia and myeloproliferative disorders. Length = 263

>gnl|CDD|133178 cd05046, PTK_CCK4, Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

 Score = 73.7 bits (181), Expect = 2e-17
 Identities = 25/63 (39%), Positives = 42/63 (66%), Gaps = 1/63 (1%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG-RLNRPA 61
           RW+APE + +  FS++SDVW+FGVL+WE+ + G+ P+   ++ +VL+ ++ G   L  P 
Sbjct: 183 RWLAPEAVQEDDFSTKSDVWSFGVLMWEVFTQGELPFYGLSDEEVLNRLQAGKLELPVPE 242

Query: 62  NCS 64
            C 
Sbjct: 243 GCP 245

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is still unknown. Other pseudokinases such as HER3 rely on the activity of partner RTKs. Length = 275

>gnl|CDD|133187 cd05056, PTKc_FAK, Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

 Score = 73.6 bits (181), Expect = 2e-17
 Identities = 29/61 (47%), Positives = 38/61 (62%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMAPE +    F+S SDVW FGV +WEI+ LG +P+    N DV+  +  G RL  P N
Sbjct: 173 KWMAPESINFRRFTSASDVWMFGVCMWEILMLGVKPFQGVKNNDVIGRIENGERLPMPPN 232

Query: 63  C 63
           C
Sbjct: 233 C 233

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions and at growth factor receptors. Through diverse molecular interactions, FAK functions as a biosensor or integrator to control cell motility. It is a key regulator of cell survival, proliferation, migration and invasion, and thus plays an important role in the development and progression of cancer. Src binds to autophosphorylated FAK forming the FAK-Src dual kinase complex, which is activated in a wide variety of tumor cells and generates signals promoting growth and metastasis. FAK is being developed as a target for cancer therapy. Length = 270

>gnl|CDD|133246 cd05115, PTKc_Zap-70, Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

 Score = 73.1 bits (179), Expect = 3e-17
 Identities = 27/61 (44%), Positives = 40/61 (65%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APEC+    FSS+SDVW++G+ +WE  S GQ+PY      +V+ ++  G RL+ PA 
Sbjct: 163 KWYAPECINFRKFSSRSDVWSYGITMWEAFSYGQKPYKKMKGPEVMSFIEQGKRLDCPAE 222

Query: 63  C 63
           C
Sbjct: 223 C 223

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its phosphorylation and activation. It then phosphorylates target proteins, which propagate the signals to downstream pathways. Zap-70 is hardly detected in normal peripheral B-cells, but is present in some B-cell malignancies. It is used as a diagnostic marker for chronic lymphocytic leukemia (CLL) as it is associated with the more aggressive subtype of the disease. Length = 257

>gnl|CDD|133195 cd05064, PTKc_EphR_A10, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

 Score = 73.0 bits (179), Expect = 3e-17
 Identities = 30/64 (46%), Positives = 42/64 (65%)

Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPANC 63
           W APE +    FSS SDVW+FG+++WE+MS G++PY   +  DV+  V  G RL  P NC
Sbjct: 174 WAAPEAIQYHHFSSASDVWSFGIVMWEVMSYGERPYWDMSGQDVIKAVEDGFRLPAPRNC 233

Query: 64  SHLI 67
            +L+
Sbjct: 234 PNLL 237

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). EphA10, which contains an inactive tyr kinase domain, may function to attenuate signals of co-clustered active receptors. EphA10 is mainly expressed in the testis. Ephrin/EphR interaction results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

 Score = 72.8 bits (179), Expect = 3e-17
 Identities = 29/61 (47%), Positives = 39/61 (63%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE  +   FS +SDVW+FG+LL EI++ G+ PYP  TN +VL  V  G R+  P  
Sbjct: 169 KWTAPEAALYNRFSIKSDVWSFGILLTEIVTYGRMPYPGMTNAEVLQQVDQGYRMPCPPG 228

Query: 63  C 63
           C
Sbjct: 229 C 229

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Frk, also known as Rak, is specifically expressed in liver, lung, kidney, intestine, mammary glands, and the islets of Langerhans. Rodent homologs were previously referred to as GTK (gastrointestinal tyr kinase), BSK (beta-cell Src-like kinase), or IYK (intestinal tyr kinase). Studies in mice reveal that Frk is not essential for viability. It plays a role in the signaling that leads to cytokine-induced beta-cell death in Type I diabetes. It also regulates beta-cell number during embryogenesis and early in life. Length = 261

>gnl|CDD|173632 cd05051, PTKc_DDR, Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

 Score = 73.2 bits (180), Expect = 3e-17
 Identities = 34/69 (49%), Positives = 45/69 (65%), Gaps = 8/69 (11%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQ-QPYPARTNVDVL----HYVRGGGR- 56
           RWMA E ++ G F+++SDVWAFGV LWEI++L + QPY   T+  V+    H+ R  GR 
Sbjct: 197 RWMAWESVLLGKFTTKSDVWAFGVTLWEILTLCREQPYEHLTDQQVIENAGHFFRDDGRQ 256

Query: 57  --LNRPANC 63
             L RP NC
Sbjct: 257 IYLPRPPNC 265

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 296

>gnl|CDD|133247 cd05116, PTKc_Syk, Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

 Score = 72.7 bits (178), Expect = 4e-17
 Identities = 28/62 (45%), Positives = 37/62 (59%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APEC+    FSS+SDVW+FGVL+WE  S GQ+PY      +V   +  G R+  P  
Sbjct: 163 KWYAPECMNYYKFSSKSDVWSFGVLMWEAFSYGQKPYKGMKGNEVTQMIESGERMECPQR 222

Query: 63  CS 64
           C 
Sbjct: 223 CP 224

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. More recently, Syk expression has been detected in other cell types (including epithelial cells, vascular endothelial cells, neurons, hepatocytes, and melanocytes), suggesting a variety of biological functions in non-immune cells. Syk plays a critical role in maintaining vascular integrity and in wound healing during embryogenesis. It also regulates Vav3, which is important in osteoclast function including bone development. In breast epithelial cells, where Syk acts as a negative regulator for epidermal growth factor receptor (EGFR) signaling, loss of Syk expression is associated with abnormal proliferation during cancer development suggesting a potential role as a tumor suppressor. In mice, Syk has been shown to inhibit malignant transformation of mammary epithelial cells induced with murine mammary tumor virus (MMTV). Length = 257

>gnl|CDD|173635 cd05054, PTKc_VEGFR, Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

 Score = 73.3 bits (180), Expect = 4e-17
 Identities = 28/59 (47%), Positives = 41/59 (69%), Gaps = 1/59 (1%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPA-RTNVDVLHYVRGGGRLNRP 60
           +WMAPE + D ++++QSDVW+FGVLLWEI SLG  PYP  + + +    ++ G R+  P
Sbjct: 240 KWMAPESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQIDEEFCRRLKEGTRMRAP 298

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. There are five VEGF ligands in mammals, which bind, in an overlapping pattern to the three VEGFRs, which can form homo or heterodimers. VEGFRs regulate the cardiovascular system. They are critical for vascular development during embryogenesis and blood vessel formation in adults. They induce cellular functions common to other growth factor receptors such as cell migration, survival, and proliferation. VEGFR1 binds VEGFA, VEGFB, and placenta growth factor (PLGF). It regulates monocyte and macrophage migration, vascular permeability, haematopoiesis, and the recruitment of haematopietic progenitor cells from the bone marrow. Length = 337

>gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase, Fer

 Score = 72.0 bits (176), Expect = 7e-17
 Identities = 30/61 (49%), Positives = 38/61 (62%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE L  G +SS+SDVW++G+LLWE  SLG  PYP  TN      V  G R++ P  
Sbjct: 159 KWTAPEALNYGRYSSESDVWSYGILLWETFSLGVCPYPGMTNQQAREQVEKGYRMSCPQK 218

Query: 63  C 63
           C
Sbjct: 219 C 219

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. Length = 250

>gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

 Score = 71.4 bits (175), Expect = 1e-16
 Identities = 29/61 (47%), Positives = 42/61 (68%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE +  G F+ +SDVW+FG+LL EI++ G+ PYP  TN +V+  +  G R+ RP N
Sbjct: 168 KWTAPEAINYGTFTIKSDVWSFGILLTEIVTYGRIPYPGMTNPEVIQNLERGYRMPRPDN 227

Query: 63  C 63
           C
Sbjct: 228 C 228

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lck is expressed in T-cells and natural killer (NK) cells. It plays a critical role in T-cell maturation, activation, and T-cell receptor (TCR) signaling. Lck phosphorylates ITAM (immunoreceptor tyr activation motif) sequences on several subunits of TCRs, leading to the activation of different second messenger cascades. Phosphorylated ITAMs serve as binding sites for other signaling factor such as Syk and ZAP-70, leading to their activation and propagation of downstream events. In addition, Lck regulates drug-induced apoptosis by interfering with the mitochondrial death pathway. The apototic role of Lck is independent of its primary function in T-cell signaling. Blk is expressed specifically in B-cells. It is involved in pre-BCR (B-cell receptor) signaling. Length = 260

>gnl|CDD|173639 cd05066, PTKc_EphR_A, Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

 Score = 71.5 bits (175), Expect = 1e-16
 Identities = 27/61 (44%), Positives = 41/61 (67%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RW APE +    F+S SDVW++G+++WE+MS G++PY   +N DV+  +  G RL  P +
Sbjct: 174 RWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWEMSNQDVIKAIEEGYRLPAPMD 233

Query: 63  C 63
           C
Sbjct: 234 C 234

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. EphARs and ephrin-A ligands are expressed in multiple areas of the developing brain, especially in the retina and tectum. They are part of a system controlling retinotectal mapping. Length = 267

>gnl|CDD|133186 cd05055, PTKc_PDGFR, Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

 Score = 71.4 bits (175), Expect = 2e-16
 Identities = 27/61 (44%), Positives = 41/61 (67%), Gaps = 3/61 (4%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHY--VRGGGRLNRP 60
           +WMAPE + + +++ +SDVW++G+LLWEI SLG  PYP    VD   Y  ++ G R+ +P
Sbjct: 208 KWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSNPYPGMP-VDSKFYKLIKEGYRMAQP 266

Query: 61  A 61
            
Sbjct: 267 E 267

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR subfamily receptors are important in the development of a variety of cells. PDGFRs are expressed in a many cells including fibroblasts, neurons, endometrial cells, mammary epithelial cells, and vascular smooth muscle cells. PDGFR signaling is critical in normal embryonic development, angiogenesis, and wound healing. PDGFRs transduce mitogenic signals for connective tissue cells and are important for cell shape and motility. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem cells, the interstitial cells of Cajal, and the pacemaker cells of the GI tract. CSF-1R signaling is critical in the regulation of macrophages and osteoclasts. Mammalian FLT3 plays an important role in the survival, proliferation, and differentiation of stem cells. Length = 302

>gnl|CDD|133221 cd05090, PTKc_Ror1, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

 Score = 71.2 bits (174), Expect = 2e-16
 Identities = 30/61 (49%), Positives = 39/61 (63%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RWM PE ++ G FSS SD+W+FGV+LWEI S G QPY   +N +V+  VR    L    +
Sbjct: 191 RWMPPEAIMYGKFSSDSDIWSFGVVLWEIFSFGLQPYYGFSNQEVIEMVRKRQLLPCSED 250

Query: 63  C 63
           C
Sbjct: 251 C 251

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. Avian Ror1 was found to be involved in late limb development. Studies in mice reveal that Ror1 is important in the regulation of neurite growth in central neurons, as well as in respiratory development. Loss of Ror1 also enhances the heart and skeletal abnormalities found in Ror2-deficient mice. Length = 283

>gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

 Score = 70.4 bits (172), Expect = 2e-16
 Identities = 27/65 (41%), Positives = 41/65 (63%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W +PE      +SS+SDVW+FGVL+WE+ S G+ PY  R+N +V+  +  G RL +P  
Sbjct: 166 KWSSPEVFSFSKYSSKSDVWSFGVLMWEVFSEGKTPYENRSNSEVVETINAGFRLYKPRL 225

Query: 63  CSHLI 67
            S  +
Sbjct: 226 ASQSV 230

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Itk contains the Tec homology (TH) domain containing one proline-rich region and a zinc-binding region. Tec kinases are expressed mainly by haematopoietic cells. Itk is expressed in T-cells and mast cells, and is important in their development and differentiation. Of the three Tec kinases expressed in T-cells, Itk plays the predominant role in T-cell receptor (TCR) signaling. It is activated by phosphorylation upon TCR crosslinking and is involved in the pathway resulting in phospholipase C-gamma1 activation and actin polymerization. It also plays a role in the downstream signaling of the T-cell costimulatory receptor CD28, the T-cell surface receptor CD2, and the chemokine receptor CXCR4. In addition, Itk is crucial for the development of T-helper(Th)2 effector responses. Length = 256

>gnl|CDD|133189 cd05058, PTKc_Met_Ron, Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

 Score = 70.2 bits (172), Expect = 3e-16
 Identities = 29/61 (47%), Positives = 40/61 (65%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMA E L    F+++SDVW+FGVLLWE+M+ G  PYP   + D+  Y+  G RL +P  
Sbjct: 167 KWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVDSFDITVYLLQGRRLLQPEY 226

Query: 63  C 63
           C
Sbjct: 227 C 227

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also called the HGF receptor. HGF/Met signaling plays a role in growth, transformation, cell motility, invasion, metastasis, angiogenesis, wound healing, and tissue regeneration. Aberrant expression of Met through mutations or gene amplification is associated with many human cancers including hereditary papillary renal and gastric carcinomas. The ligand for Ron is macrophage stimulating protein (MSP). Ron signaling is important in regulating cell motility, adhesion, proliferation, and apoptosis. Aberrant Ron expression is implicated in tumorigenesis and metastasis. Length = 262

>gnl|CDD|173653 cd05105, PTKc_PDGFR_alpha, Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

 Score = 70.1 bits (171), Expect = 9e-16
 Identities = 29/65 (44%), Positives = 43/65 (66%), Gaps = 3/65 (4%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHY--VRGGGRLNRP 60
           +WMAPE + D L+++ SDVW++G+LLWEI SLG  PYP    VD   Y  ++ G R+ +P
Sbjct: 304 KWMAPESIFDNLYTTLSDVWSYGILLWEIFSLGGTPYPGMI-VDSTFYNKIKSGYRMAKP 362

Query: 61  ANCSH 65
            + + 
Sbjct: 363 DHATQ 367

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-AB, and PDGF-CC induce PDGFR alpha homodimerization. PDGFR signaling plays many roles in normal embryonic development and adult physiology. PDGFR alpha signaling is important in the formation of lung alveoli, intestinal villi, mesenchymal dermis, and hair follicles, as well as in the development of oligodendrocytes, retinal astrocytes, neural crest cells, and testicular cells. Aberrant PDGFR alpha expression is associated with some human cancers. Mutations in PDGFR alpha have been found within a subset of gastrointestinal stromal tumors (GISTs). An active fusion protein FIP1L1-PDGFR alpha, derived from interstitial deletion, is associated with idiopathic hypereosinophilic syndrome (HES) and chronic eosinophilic leukemia (CEL). Length = 400

>gnl|CDD|133237 cd05106, PTKc_CSF-1R, Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

 Score = 69.5 bits (170), Expect = 1e-15
 Identities = 29/60 (48%), Positives = 43/60 (71%), Gaps = 3/60 (5%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHY--VRGGGRLNRP 60
           +WMAPE + D +++ QSDVW++G+LLWEI SLG+ PYP    V+   Y  V+ G +++RP
Sbjct: 279 KWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGKSPYPGIL-VNSKFYKMVKRGYQMSRP 337

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is critical in the regulation of macrophages and osteoclasts. It leads to increases in gene transcription and protein translation, and induces cytoskeletal remodeling. CSF-1R signaling leads to a variety of cellular responses including survival, proliferation, and differentiation of target cells. It plays an important role in innate immunity, tissue development and function, and the pathogenesis of some diseases including atherosclerosis and cancer. CSF-1R signaling is also implicated in mammary gland development during pregnancy and lactation. Aberrant CSF-1/CSF-1R expression correlates with tumor cell invasiveness, poor clinical prognosis, and bone metastasis in breast cancer. Although the structure of the human CSF-1R catalytic domain is known, it is excluded from this specific alignment model because it contains a deletion in its sequence. Length = 374

>gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

 Score = 68.5 bits (167), Expect = 1e-15
 Identities = 29/61 (47%), Positives = 40/61 (65%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE L +  FS++SDVW+FG+LLWEI S G+ PYP     DV+  V  G +++ P  
Sbjct: 164 KWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKMDAPDG 223

Query: 63  C 63
           C
Sbjct: 224 C 224

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Csk is expressed in a wide variety of tissues. As a negative regulator of Src, Csk plays a role in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, Csk also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. Length = 256

>gnl|CDD|173658 cd05114, PTKc_Tec_Rlk, Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

 Score = 68.3 bits (167), Expect = 1e-15
 Identities = 25/65 (38%), Positives = 40/65 (61%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W  PE      +SS+SDVW+FGVL+WE+ + G+ P+  ++N +V+  +  G RL RP  
Sbjct: 166 KWSPPEVFNFSKYSSKSDVWSFGVLMWEVFTEGKMPFEKKSNYEVVEMISRGFRLYRPKL 225

Query: 63  CSHLI 67
            S  +
Sbjct: 226 ASMTV 230

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. Instead of PH, Rlk contains an N-terminal cysteine-rich region. In addition to PH, Tec also contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Tec is more widely-expressed than other Tec subfamily kinases. It is found in endothelial cells, both B- and T-cells, and a variety of myeloid cells including mast cells, erythroid cells, platelets, macrophages and neutrophils. Rlk is expressed in T-cells and mast cell lines. Tec and Rlk are both key components of T-cell receptor (TCR) signaling. They are important in TCR-stimulated proliferation, IL-2 production and phopholipase C-gamma1 activation. Length = 256

>gnl|CDD|133234 cd05103, PTKc_VEGFR2, Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

 Score = 68.9 bits (168), Expect = 2e-15
 Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 1/59 (1%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPA-RTNVDVLHYVRGGGRLNRP 60
           +WMAPE + D +++ QSDVW+FGVLLWEI SLG  PYP  + + +    ++ G R+  P
Sbjct: 246 KWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAP 304

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosphorylation and activation. VEGFR2 binds the ligands VEGFA, VEGFC, VEGFD and VEGFE. VEGFR2 signaling is implicated in all aspects of normal and pathological vascular endothelial cell biology. It induces a variety of cellular effects including migration, survival, and proliferation. It is critical in regulating embryonic vascular development and angiogenesis. VEGFR2 is the major signal transducer in pathological angiogenesis including cancer and diabetic retinopathy, and is a target for inhibition in cancer therapy. Length = 343

>gnl|CDD|133194 cd05063, PTKc_EphR_A2, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

 Score = 67.7 bits (165), Expect = 3e-15
 Identities = 27/61 (44%), Positives = 41/61 (67%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RW APE +    F+S SDVW+FG+++WE+MS G++PY   +N +V+  +  G RL  P +
Sbjct: 175 RWTAPEAIAYRKFTSASDVWSFGIVMWEVMSFGERPYWDMSNHEVMKAINDGFRLPAPMD 234

Query: 63  C 63
           C
Sbjct: 235 C 235

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. The EphA2 receptor is overexpressed in tumor cells and tumor blood vessels in a variety of cancers including breast, prostate, lung, and colon. As a result, it is an attractive target for drug design since its inhibition could affect several aspects of tumor progression. Length = 268

>gnl|CDD|133220 cd05089, PTKc_Tie1, Catalytic domain of the Protein Tyrosine Kinase, Tie1

 Score = 67.7 bits (165), Expect = 4e-15
 Identities = 29/61 (47%), Positives = 41/61 (67%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RWMA E L   +++++SDVW+FGVLLWEI+SLG  PY   T  ++   +  G R+ +P N
Sbjct: 183 RWMAIESLNYSVYTTKSDVWSFGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYRMEKPRN 242

Query: 63  C 63
           C
Sbjct: 243 C 243

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations. In vivo studies of Tie1 show that it is critical in vascular development. Length = 297

>gnl|CDD|173647 cd05091, PTKc_Ror2, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

 Score = 67.4 bits (164), Expect = 5e-15
 Identities = 28/61 (45%), Positives = 40/61 (65%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RWM+PE ++ G FS  SD+W++GV+LWE+ S G QPY   +N DV+  +R    L  P +
Sbjct: 191 RWMSPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQDVIEMIRNRQVLPCPDD 250

Query: 63  C 63
           C
Sbjct: 251 C 251

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror2 plays important roles in skeletal and heart formation. Ror2-deficient mice show widespread bone abnormalities, ventricular defects in the heart, and respiratory dysfunction. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Ror2 is also implicated in neural development. Length = 283

>gnl|CDD|173638 cd05065, PTKc_EphR_B, Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

 Score = 66.4 bits (162), Expect = 8e-15
 Identities = 26/62 (41%), Positives = 41/62 (66%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RW APE +    F+S SDVW++G+++WE+MS G++PY   +N DV++ +    RL  P +
Sbjct: 176 RWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQDVINAIEQDYRLPPPMD 235

Query: 63  CS 64
           C 
Sbjct: 236 CP 237

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion. EphBRs play important roles in synapse formation and plasticity, spine morphogenesis, axon guidance, and angiogenesis. In the intestinal epithelium, EphBRs are Wnt signaling target genes that control cell compartmentalization. They function as suppressors of color cancer progression. Length = 269

>gnl|CDD|88330 cd05047, PTKc_Tie, Catalytic domain of Tie Protein Tyrosine Kinases

 Score = 65.9 bits (160), Expect = 1e-14
 Identities = 29/61 (47%), Positives = 40/61 (65%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RWMA E L   ++++ SDVW++GVLLWEI+SLG  PY   T  ++   +  G RL +P N
Sbjct: 176 RWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYRLEKPLN 235

Query: 63  C 63
           C
Sbjct: 236 C 236

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific ligand has been identified for Tie1. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. In vivo studies of Tie1 show that it is critical in vascular development. Length = 270

>gnl|CDD|173648 cd05092, PTKc_TrkA, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

 Score = 65.8 bits (160), Expect = 1e-14
 Identities = 25/61 (40%), Positives = 40/61 (65%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RWM PE ++   F+++SD+W+FGV+LWEI + G+QP+   +N + +  +  G  L RP  
Sbjct: 189 RWMPPESILYRKFTTESDIWSFGVVLWEIFTYGKQPWYQLSNTEAIECITQGRELERPRT 248

Query: 63  C 63
           C
Sbjct: 249 C 249

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory and sympathetic neurons of the peripheral nervous system, and in basal forebrain cholinergic neurons of the central nervous system. It is critical for neuronal growth, differentiation and survival. Alternative TrkA splicing has been implicated as a pivotal regulator of neuroblastoma (NB) behavior. Normal TrkA expression is associated with better NB prognosis, while the hypoxia-regulated TrkAIII splice variant promotes NB pathogenesis and progression. Aberrant TrkA expression has also been demonstrated in non-neural tumors including prostate, breast, lung, and pancreatic cancers. Length = 280

>gnl|CDD|133238 cd05107, PTKc_PDGFR_beta, Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

 Score = 66.6 bits (162), Expect = 2e-14
 Identities = 28/63 (44%), Positives = 43/63 (68%), Gaps = 1/63 (1%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPA-RTNVDVLHYVRGGGRLNRPA 61
           +WMAPE + + L+++ SDVW+FG+LLWEI +LG  PYP    N    + ++ G R+ +PA
Sbjct: 306 KWMAPESIFNNLYTTLSDVWSFGILLWEIFTLGGTPYPELPMNEQFYNAIKRGYRMAKPA 365

Query: 62  NCS 64
           + S
Sbjct: 366 HAS 368

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-DD induce PDGFR beta homodimerization. PDGFR signaling plays many roles in normal embryonic development and adult physiology. PDGFR beta signaling leads to a variety of cellular effects including the stimulation of cell growth and chemotaxis, as well as the inhibition of apoptosis and GAP junctional communication. It is critical in normal angiogenesis as it is involved in the recruitment of pericytes and smooth muscle cells essential for vessel stability. Aberrant PDGFR beta expression is associated with some human cancers. The continuously-active fusion proteins of PDGFR beta with COL1A1 and TEL are associated with dermatofibrosarcoma protuberans (DFSP) and a subset of chronic myelomonocytic leukemia (CMML), respectively. Length = 401

>gnl|CDD|133219 cd05088, PTKc_Tie2, Catalytic domain of the Protein Tyrosine Kinase, Tie2

 Score = 65.8 bits (160), Expect = 2e-14
 Identities = 29/61 (47%), Positives = 40/61 (65%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RWMA E L   ++++ SDVW++GVLLWEI+SLG  PY   T  ++   +  G RL +P N
Sbjct: 188 RWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYRLEKPLN 247

Query: 63  C 63
           C
Sbjct: 248 C 248

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. Tie2 signaling plays key regulatory roles in vascular integrity and quiescence, and in inflammation. Length = 303

>gnl|CDD|133227 cd05096, PTKc_DDR1, Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

 Score = 65.7 bits (160), Expect = 2e-14
 Identities = 33/69 (47%), Positives = 42/69 (60%), Gaps = 8/69 (11%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQ-QPYPARTNVDVL----HYVRGGGR- 56
           RWMA EC++ G F++ SDVWAFGV LWEI+ L + QPY   T+  V+     + R  GR 
Sbjct: 205 RWMAWECILMGKFTTASDVWAFGVTLWEILMLCKEQPYGELTDEQVIENAGEFFRDQGRQ 264

Query: 57  --LNRPANC 63
             L RP  C
Sbjct: 265 VYLFRPPPC 273

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in keratinocytes, colonic mucosa epithelium, lung epithelium, thyroid follicles, and the islets of Langerhans. During embryonic development, it is found in the developing neuroectoderm. DDR1 is a key regulator of cell morphogenesis, differentiation and proliferation. It is important in the development of the mammary gland, the vasculator and the kidney. DDR1 is also found in human leukocytes, where it facilitates cell adhesion, migration, maturation, and cytokine production. Length = 304

>gnl|CDD|133204 cd05073, PTKc_Hck, Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

 Score = 65.0 bits (158), Expect = 2e-14
 Identities = 28/61 (45%), Positives = 42/61 (68%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE +  G F+ +SDVW+FG+LL EI++ G+ PYP  +N +V+  +  G R+ RP N
Sbjct: 168 KWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVIRALERGYRMPRPEN 227

Query: 63  C 63
           C
Sbjct: 228 C 228

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Hck is present in myeloid and lymphoid cells that play a role in the development of cancer. It may be important in the oncogenic signaling of the protein Tel-Abl, which induces a chronic myelogenous leukemia (CML)-like disease. Hck also acts as a negative regulator of granulocyte colony-stimulating factor (G-CSF)-induced proliferation of granulocytic precursors, suggesting a possible role in the development of acute myeloid leukemia (AML). In addition, Hck is essential in regulating the degranulation of polymorphonuclear leukocytes (PMNs). Genetic polymorphisms affect the expression level of Hck, which affects PMN mediator release and influences the development of chronic obstructive pulmonary disease (COPD). Length = 260

>gnl|CDD|173650 cd05094, PTKc_TrkC, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

 Score = 65.4 bits (159), Expect = 3e-14
 Identities = 27/61 (44%), Positives = 41/61 (67%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RWM PE ++   F+++SDVW+FGV+LWEI + G+QP+   +N +V+  +  G  L RP  
Sbjct: 190 RWMPPESIMYRKFTTESDVWSFGVILWEIFTYGKQPWFQLSNTEVIECITQGRVLERPRV 249

Query: 63  C 63
           C
Sbjct: 250 C 250

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some non-neural tissues including the developing heart. NT3/TrkC signaling plays an important role in the innervation of the cardiac conducting system and the development of smooth muscle cells. Mice deficient with NT3 and TrkC have multiple heart defects. NT3/TrkC signaling is also critical for the development and maintenance of enteric neurons that are important for the control of gut peristalsis. Length = 291

>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 64.7 bits (158), Expect = 4e-14
 Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 14/75 (18%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPY-----------PARTNVDVLHYV 51
            W APECL    FSS SDVW+FGV L+E+ + G                A+  + V   +
Sbjct: 177 FWYAPECLRTSKFSSASDVWSFGVTLYELFTYGDPSQSPPAEFLRMIGIAQGQMIVTRLL 236

Query: 52  R---GGGRLNRPANC 63
                G RL RP +C
Sbjct: 237 ELLKEGERLPRPPSC 251

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284

>gnl|CDD|133200 cd05069, PTKc_Yes, Catalytic domain of the Protein Tyrosine Kinase, Yes

 Score = 63.9 bits (155), Expect = 6e-14
 Identities = 30/77 (38%), Positives = 44/77 (57%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE  + G F+ +SDVW+FG+LL E+++ G+ PYP   N +VL  V  G R+  P  
Sbjct: 168 KWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMVNREVLEQVERGYRMPCPQG 227

Query: 63  CSHLIRSRNRLTENKAP 79
           C   +    +L   K P
Sbjct: 228 CPESLHELMKLCWKKDP 244

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. c-Yes kinase is the cellular homolog of the oncogenic protein (v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma viruses. It displays functional overlap with other Src subfamily members, particularly Src. It also shows some unique functions such as binding to occludins, transmembrane proteins that regulate extracellular interactions in tight junctions. Yes also associates with a number of proteins in different cell types that Src does not interact with, like JAK2 and gp130 in pre-adipocytes, and Pyk2 in treated pulmonary vein endothelial cells. Although the biological function of Yes remains unclear, it appears to have a role in regulating cell-cell interactions and vesicle trafficking in polarized cells. Length = 260

>gnl|CDD|173649 cd05093, PTKc_TrkB, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

 Score = 63.9 bits (155), Expect = 9e-14
 Identities = 26/61 (42%), Positives = 40/61 (65%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RWM PE ++   F+++SDVW+ GV+LWEI + G+QP+   +N +V+  +  G  L RP  
Sbjct: 187 RWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNEVIECITQGRVLQRPRT 246

Query: 63  C 63
           C
Sbjct: 247 C 247

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly expressed in the nervous system and in some non-neural tissues. It plays important roles in cell proliferation, differentiation, and survival. BDNF/Trk signaling plays a key role in regulating activity-dependent synaptic plasticity. TrkB also contributes to protection against gp120-induced neuronal cell death. TrkB overexpression is associated with poor prognosis in neuroblastoma (NB) and other human cancers. It acts as a suppressor of anoikis (detachment-induced apoptosis) and contributes to tumor metastasis. Length = 288

>gnl|CDD|133201 cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

 Score = 62.7 bits (152), Expect = 2e-13
 Identities = 27/61 (44%), Positives = 40/61 (65%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE  + G F+ +SDVW+FG+LL E+++ G+ PYP   N +VL  V  G R+  P +
Sbjct: 168 KWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMNNREVLEQVERGYRMPCPQD 227

Query: 63  C 63
           C
Sbjct: 228 C 228

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Fyn, together with Lck, plays a critical role in T-cell signal transduction by phosphorylating ITAM (immunoreceptor tyr activation motif) sequences on T-cell receptors, ultimately leading to the proliferation and differentiation of T-cells. In addition, Fyn is involved in the myelination of neurons, and is implicated in Alzheimer's and Parkinson's diseases. Yrk has been detected only in chickens. It is primarily found in neuronal and epithelial cells and in macrophages. It may play a role in inflammation and in response to injury. Length = 260

>gnl|CDD|133235 cd05104, PTKc_Kit, Catalytic domain of the Protein Tyrosine Kinase, Kit

 Score = 63.4 bits (154), Expect = 2e-13
 Identities = 27/60 (45%), Positives = 40/60 (66%), Gaps = 3/60 (5%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHY--VRGGGRLNRP 60
           +WMAPE + + +++ +SDVW++G+LLWEI SLG  PYP    VD   Y  ++ G R+  P
Sbjct: 281 KWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSSPYP-GMPVDSKFYKMIKEGYRMLSP 339

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem cells, the interstitial cells of Cajal, and the pacemaker cells of the GI tract. Kit signaling is involved in major cellular functions including cell survival, proliferation, differentiation, adhesion, and chemotaxis. Mutations in Kit, which result in constitutive ligand-independent activation, are found in human cancers such as gastrointestinal stromal tumor (GIST) and testicular germ cell tumor (TGCT). The aberrant expression of Kit and/or SCF is associated with other tumor types such as systemic mastocytosis and cancers of the breast, neurons, lung, prostate, colon, and rectum. Although the structure of the human Kit catalytic domain is known, it is excluded from this specific alignment model because it contains a deletion in its sequence. Length = 375

>gnl|CDD|133202 cd05071, PTKc_Src, Catalytic domain of the Protein Tyrosine Kinase, Src

 Score = 61.6 bits (149), Expect = 6e-13
 Identities = 27/61 (44%), Positives = 38/61 (62%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE  + G F+ +SDVW+FG+LL E+ + G+ PYP   N +VL  V  G R+  P  
Sbjct: 168 KWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPE 227

Query: 63  C 63
           C
Sbjct: 228 C 228

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Src also play a role in regulating cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Elevated levels of Src kinase activity have been reported in a variety of human cancers. Several inhibitors of Src have been developed as anti-cancer drugs. Src is also implicated in acute inflammatory responses and osteoclast function. Length = 262

>gnl|CDD|133240 cd05109, PTKc_HER2, Catalytic domain of the Protein Tyrosine Kinase, HER2

 Score = 61.2 bits (148), Expect = 8e-13
 Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 6/65 (9%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPY---PARTNVDVLHYVRGGGRLNR 59
           +WMA E ++   F+ QSDVW++GV +WE+M+ G +PY   PAR   D+L     G RL +
Sbjct: 176 KWMALESILHRRFTHQSDVWSYGVTVWELMTFGAKPYDGIPAREIPDLL---EKGERLPQ 232

Query: 60  PANCS 64
           P  C+
Sbjct: 233 PPICT 237

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER2 does not bind to any known EGFR subfamily ligands, but contributes to the kinase activity of all possible heterodimers. It acts as the preferred partner with other ligand-bound EGFR proteins and functions as a signal amplifier, with the HER2-HER3 heterodimer being the most potent pair in mitogenic signaling. HER2 plays an important role in cell development, proliferation, survival and motility. Overexpression of HER2 results in its activation and downstream signaling, even in the absence of ligand. HER2 overexpression, mainly due to gene amplification, has been shown in a variety of human cancers. Its role in breast cancer is especially well-documented. HER2 is up-regulated in about 25% of breast tumors and is associated with increases in tumor aggressiveness, recurrence and mortality. HER2 is a target for monoclonal antibodies and small molecule inhibitors, which are being developed as treatments for cancer. The first humanized antibody approved for clinical use is Trastuzumab (Herceptin), which is being used in combination with other therapies to improve the survival rates of patients with HER2-overexpressing breast cancer. Length = 279

>gnl|CDD|173656 cd05111, PTK_HER3, Pseudokinase domain of the Protein Tyrosine Kinase, HER3

 Score = 60.7 bits (147), Expect = 1e-12
 Identities = 25/62 (40%), Positives = 39/62 (62%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMA E ++ G ++ QSDVW++GV +WE+MS G +PY      +V   +  G RL +P  
Sbjct: 176 KWMALESILFGRYTHQSDVWSYGVTVWEMMSYGAEPYAGMRPHEVPDLLEKGERLAQPQI 235

Query: 63  CS 64
           C+
Sbjct: 236 CT 237

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER3 binds the neuregulin ligands, NRG1 and NRG2. HER3 contains an impaired tyr kinase domain and relies on its heterodimerization partners for activity following ligand binding. The HER2-HER3 heterodimer constitutes a high affinity co-receptor capable of potent mitogenic signaling. HER3 participates in a signaling pathway involved in the proliferation, survival, adhesion, and motility of tumor cells. Length = 279

>gnl|CDD|173655 cd05110, PTKc_HER4, Catalytic domain of the Protein Tyrosine Kinase, HER4

 Score = 58.5 bits (141), Expect = 9e-12
 Identities = 24/62 (38%), Positives = 38/62 (61%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMA EC+    F+ QSDVW++GV +WE+M+ G +PY      ++   +  G RL +P  
Sbjct: 176 KWMALECIHYRKFTHQSDVWSYGVTIWELMTFGGKPYDGIPTREIPDLLEKGERLPQPPI 235

Query: 63  CS 64
           C+
Sbjct: 236 CT 237

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands that bind HER4 fall into two groups, the neuregulins (or heregulins) and some EGFR (HER1) ligands including betacellulin, HBEGF, and epiregulin. All four neuregulins (NRG1-4) interact with HER4. Upon ligand binding, HER4 forms homo- or heterodimers with other HER proteins. HER4 is essential in embryonic development. It is implicated in mammary gland, cardiac, and neural development. As a postsynaptic receptor of NRG1, HER4 plays an important role in synaptic plasticity and maturation. The impairment of NRG1/HER4 signaling may contribute to schizophrenia. Length = 303

>gnl|CDD|173651 cd05095, PTKc_DDR2, Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

 Score = 57.2 bits (138), Expect = 3e-11
 Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 8/69 (11%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQ-QPYPARTNVDVL----HYVRGGGR- 56
           RWM+ E ++ G F++ SDVWAFGV LWEI++L + QPY   ++  V+     + R  GR 
Sbjct: 197 RWMSWESILLGKFTTASDVWAFGVTLWEILTLCKEQPYSQLSDEQVIENTGEFFRDQGRQ 256

Query: 57  --LNRPANC 63
             L +PA C
Sbjct: 257 VYLPKPALC 265

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues with the highest levels found in skeletal muscle, skin, kidney and lung. It is important in cell proliferation and development. Mice, with a deletion of DDR2, suffer from dwarfism and delayed healing of epidermal wounds. DDR2 also contributes to collagen (type I) regulation by inhibiting fibrillogenesis and altering the morphology of collagen fibers. It is also expressed in immature dendritic cells (DCs), where it plays a role in DC activation and function. Length = 296

>gnl|CDD|173654 cd05108, PTKc_EGFR, Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

 Score = 56.5 bits (136), Expect = 4e-11
 Identities = 22/62 (35%), Positives = 39/62 (62%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMA E ++  +++ QSDVW++GV +WE+M+ G +PY      ++   +  G RL +P  
Sbjct: 176 KWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPI 235

Query: 63  CS 64
           C+
Sbjct: 236 CT 237

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands for EGFR include EGF, heparin binding EGF-like growth factor (HBEGF), epiregulin, amphiregulin, TGFalpha, and betacellulin. Upon ligand binding, EGFR can form homo- or heterodimers with other EGFR subfamily members. The EGFR signaling pathway is one of the most important pathways regulating cell proliferation, differentiation, survival, and growth. Overexpression and mutation in the kinase domain of EGFR have been implicated in the development and progression of a variety of cancers. A number of monoclonal antibodies and small molecule inhibitors have been developed that target EGFR, including the antibodies Cetuximab and Panitumumab, which are used in combination with other therapies for the treatment of colorectal cancer and non-small cell lung carcinoma (NSCLC). The small molecule inhibitors Gefitinib (Iressa) and Erlotinib (Tarceva), already used for NSCLC, are undergoing clinical trials for other types of cancer including gastrointestinal, breast, head and neck, and bladder. Length = 316

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score = 54.8 bits (133), Expect = 1e-10
 Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVL 48
           +MAPE L+   +    D+W+ GV+L+E+++ G+ P+P    +  L
Sbjct: 162 YMAPEVLLGKGYGKAVDIWSLGVILYELLT-GKPPFPGDDQLLEL 205

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|133228 cd05097, PTKc_DDR_like, Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

 Score = 54.6 bits (131), Expect = 2e-10
 Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 8/69 (11%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSL-GQQPYPARTNVDVL----HYVRGGGR- 56
           RWMA E ++ G F++ SDVWAFGV LWE+ +L  +QPY   ++  V+     + R  GR 
Sbjct: 196 RWMAWESILLGKFTTASDVWAFGVTLWEMFTLCKEQPYSLLSDEQVIENTGEFFRNQGRQ 255

Query: 57  --LNRPANC 63
             L++   C
Sbjct: 256 IYLSQTPLC 264

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 295

>gnl|CDD|133217 cd05086, PTKc_Aatyk2, Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

 Score = 52.6 bits (126), Expect = 1e-09
 Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 7/56 (12%)

Query: 3   RWMAPECLV---DGLFSSQ----SDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYV 51
           RW+APE +     GL +++    S+VWA GV LWE+     QPY   ++ +VL++V
Sbjct: 166 RWLAPELVGEFHGGLITAEQTKPSNVWALGVTLWELFENAAQPYSHLSDREVLNHV 221

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage spermatogenesis. Although it is classified as a tyr kinase based on sequence similarity and the phylogenetic tree, Aatyk2 has been characterized as a serine/threonine kinase. Length = 268

>gnl|CDD|133174 cd05042, PTKc_Aatyk, Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

 Score = 51.8 bits (124), Expect = 2e-09
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 9/57 (15%)

Query: 3   RWMAPECLVDGLFSS--------QSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYV 51
           RW+APE LV+             +S++W+ GV +WE+ +   QPYP  ++  VL  V
Sbjct: 167 RWLAPE-LVEIRGQDLLPKDQTKKSNIWSLGVTMWELFTAADQPYPDLSDEQVLKQV 222

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kinases based on overall sequence similarity and the phylogenetic tree. However, analysis of catalytic residues suggests that Aatyk proteins may be multispecific kinases, functioning also as serine/threonine kinases. They are involved in neural differentiation, nerve growth factor (NGF) signaling, apoptosis, and spermatogenesis. Length = 269

>gnl|CDD|173646 cd05087, PTKc_Aatyk1_Aatyk3, Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

 Score = 51.1 bits (122), Expect = 3e-09
 Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 9/57 (15%)

Query: 3   RWMAPECLVDGLFSS--------QSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYV 51
           RW+APE LVD +  +        +S+VW+ GV +WE+  LG QPY   ++  VL Y 
Sbjct: 167 RWIAPE-LVDEVHGNLLVVDQTKESNVWSLGVTIWELFELGSQPYRHLSDEQVLTYT 222

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells. Aatyk1 has been implicated in neural differentiation, and is a regulator of the Na-K-2Cl cotransporter, a membrane protein involved in cell proliferation and survival, epithelial transport, and blood pressure control. The function of Aatyk3 is still unknown. Length = 269

>gnl|CDD|173644 cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

 Score = 51.1 bits (122), Expect = 4e-09
 Identities = 27/75 (36%), Positives = 34/75 (45%), Gaps = 14/75 (18%)

Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPY-----------PARTNVDVLHYVR 52
           W APECL+   F   SDVW+FGV L+E+++                 P    + V   VR
Sbjct: 178 WYAPECLIQSKFYIASDVWSFGVTLYELLTYCDSESSPMTLFLKMIGPTHGQMTVTRLVR 237

Query: 53  ---GGGRLNRPANCS 64
               G RL RP NC 
Sbjct: 238 VLEEGKRLPRPPNCP 252

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak1 is widely expressed in many tissues. Many cytokines are dependent on Jak1 for signaling, including those that use the shared receptor subunits common gamma chain (IL-2, IL-4, IL-7, IL-9, IL-15, IL-21) and gp130 (IL-6, IL-11, oncostatin M, G-CSF, and IFNs, among others). The many varied interactions of Jak1 and its ubiquitous expression suggest many biological roles. Jak1 is important in neurological development, as well as in lymphoid development and function. It also plays a role in the pathophysiology of cardiac hypertrophy and heart failure. A mutation in the ATP-binding site of Jak1 was identified in a human uterine leiomyosarcoma cell line, resulting in defective cytokine induction and antigen presentation, thus allowing the tumor to evade the immune system. Length = 284

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 49.6 bits (119), Expect = 1e-08
 Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 2/48 (4%)

Query: 3   RWMAPECLVDGL-FSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLH 49
            +MAPE L+ G  +  + DVW+ GV+L+E+++ G+ P+     +D L 
Sbjct: 163 WYMAPEVLLGGNGYGPKVDVWSLGVILYELLT-GKPPFSGENILDQLQ 209

Length = 260

>gnl|CDD|133212 cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

 Score = 47.8 bits (114), Expect = 5e-08
 Identities = 16/30 (53%), Positives = 22/30 (73%)

Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMS 33
           W APE L +  FS  SDVW+FGV+L+E+ +
Sbjct: 177 WYAPESLTESKFSVASDVWSFGVVLYELFT 206

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak2 is widely expressed in many tissues while Jak3 is expressed only in hematopoietic cells. Jak2 is essential for the signaling of hormone-like cytokines such as growth hormone, erythropoietin, thrombopoietin, and prolactin, as well as some IFNs and cytokines that signal through the IL-3 and gp130 receptors. Jak3 binds the shared receptor subunit common gamma chain and thus, is essential in the signaling of cytokines that use it such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice results in an embryonic lethal phenotype with multiple defects including erythropoietic and cardiac abnormalities. It is the only Jak gene that results in a lethal phenotype when disrupted in mice. A mutation in the pseudokinase domain of Jak2, V617F, is present in many myeloproliferative diseases, including almost all patients with polycythemia vera, and 50% of patients with essential thrombocytosis and myelofibrosis. Jak3 is important in lymphoid development and myeloid cell differentiation. Inactivating mutations in Jak3 have been reported in humans with severe combined immunodeficiency (SCID). Length = 284

>gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

 Score = 47.6 bits (113), Expect = 6e-08
 Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 14/79 (17%)

Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSL--GQQPYPAR------------TNVDVLH 49
           W A ECL +  FS  SDVW+FGV L+E+++    +Q  P +            T V ++ 
Sbjct: 176 WYAVECLKENKFSYASDVWSFGVTLYELLTHCDSKQSPPKKFEEMIGPKQGQMTVVRLIE 235

Query: 50  YVRGGGRLNRPANCSHLIR 68
            +  G RL  P NC   + 
Sbjct: 236 LLERGMRLPCPKNCPQEVY 254

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Tyk2 is widely expressed in many tissues. It is involved in signaling via the cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell surface urokinase receptor (uPAR) signaling and plays a role in modulating vascular smooth muscle cell (VSMC) functional behavior in response to injury. Tyk2 is also important in dendritic cell function and T helper (Th)1 cell differentiation. A homozygous mutation of Tyk2 was found in a patient with hyper-IgE syndrome (HIES), a primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and elevated serum IgE. This suggests that Tyk2 may play important roles in multiple cytokine signaling involved in innate and adaptive immunity. Length = 283

>gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

 Score = 47.1 bits (112), Expect = 9e-08
 Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 5/82 (6%)

Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPANC 63
           WMAPE +    ++ ++D+W+ G L+ E+++ G+ P+P  T +  +  +        P+N 
Sbjct: 178 WMAPEVVKQTSYTRKADIWSLGCLVVEMLT-GKHPFPDCTQLQAIFKIGENASPEIPSNI 236

Query: 64  S----HLIRSRNRLTENKAPSA 81
           S      +     +  NK P+A
Sbjct: 237 SSEAIDFLEKTFEIDHNKRPTA 258

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Byr2 is regulated by Ras1. It responds to pheromone signaling and controls mating through the MAPK pathway. Budding yeast Ste11 functions in MAPK cascades that regulate mating, high osmolarity glycerol, and filamentous growth responses. Length = 267

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score = 45.7 bits (109), Expect = 3e-07
 Identities = 15/33 (45%), Positives = 24/33 (72%), Gaps = 1/33 (3%)

Query: 3   RWMAPECLVD-GLFSSQSDVWAFGVLLWEIMSL 34
            +MAPE L+  G +S +SD+W+ GV+L+E+  L
Sbjct: 158 AYMAPEVLLGKGYYSEKSDIWSLGVILYELPEL 190

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 45.6 bits (109), Expect = 3e-07
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 3/64 (4%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVD--VLHYVRGGGRLNRP 60
            WMAPE +    +   +D+W+ G  + E+ + G+ P+    N    +      G     P
Sbjct: 168 YWMAPEVIRGEEYGRAADIWSLGCTVIEMAT-GKPPWSELGNPMAALYKIGSSGEPPEIP 226

Query: 61  ANCS 64
            + S
Sbjct: 227 EHLS 230

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|173735 cd07831, STKc_MOK, Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

 Score = 44.2 bits (105), Expect = 9e-07
 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 5/51 (9%)

Query: 2   TRWM-APECLV-DGLFSSQSDVWAFGVLLWEIMSLGQQP-YPARTNVDVLH 49
           TRW  APECL+ DG +  + D+WA G + +EI+SL   P +P    +D + 
Sbjct: 161 TRWYRAPECLLTDGYYGPKMDIWAVGCVFFEILSL--FPLFPGTNELDQIA 209

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation. Length = 282

>gnl|CDD|173627 cd05037, PTK_Jak_rpt1, Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 43.6 bits (103), Expect = 2e-06
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 2/59 (3%)

Query: 4   WMAPECLVDGL--FSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRP 60
           W+APEC+ +G    +  +D W+FG  L EI S G++P    ++ +   + +   RL  P
Sbjct: 170 WIAPECIRNGQASLTIAADKWSFGTTLLEICSNGEEPLSTLSSSEKERFYQDQHRLPMP 228

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 259

>gnl|CDD|173744 cd07847, STKc_CDKL1_4, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

 Score = 42.7 bits (101), Expect = 3e-06
 Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 3/53 (5%)

Query: 2   TRWM-APECLV-DGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVR 52
           TRW  APE LV D  +    DVWA G +  E+++ GQ  +P +++VD L+ +R
Sbjct: 163 TRWYRAPELLVGDTQYGPPVDVWAIGCVFAELLT-GQPLWPGKSDVDQLYLIR 214

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The function of CDKL4 is unknown. Length = 286

>gnl|CDD|173680 cd05589, STKc_PKN, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

 Score = 42.4 bits (100), Expect = 4e-06
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 5   MAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYP 40
           +APE L +  ++   D W  GVL++E M +G+ P+P
Sbjct: 168 LAPEVLTETSYTRAVDWWGLGVLIYE-MLVGESPFP 202

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved in many biological processes including cytokeletal regulation, cell adhesion, vesicle transport, glucose transport, regulation of meiotic maturation and embryonic cell cycles, signaling to the nucleus, and tumorigenesis. Length = 324

>gnl|CDD|133209 cd05078, PTK_Jak2_Jak3_rpt1, Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

 Score = 42.1 bits (99), Expect = 6e-06
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 4   WMAPECLVDGL-FSSQSDVWAFGVLLWEIMSLGQQPYPA 41
           W+ PEC+ +    S  +D W+FG  LWEI S G +P  A
Sbjct: 170 WVPPECIENPQNLSLAADKWSFGTTLWEIFSGGDKPLSA 208

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak2 is widely expressed in many tissues while Jak3 is expressed only in hematopoietic cells. Jak2 is essential for the signaling of hormone-like cytokines such as growth hormone, erythropoietin, thrombopoietin, and prolactin, as well as some IFNs and cytokines that signal through the IL-3 and gp130 receptors. Jak3 binds the shared receptor subunit common gamma chain and thus, is essential in the signaling of cytokines that use it such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice results in an embryonic lethal phenotype with multiple defects including erythropoietic and cardiac abnormalities. It is the only Jak gene that results in a lethal phenotype when disrupted in mice. A mutation in the pseudokinase domain of Jak2, V617F, is present in many myeloproliferative diseases, including almost all patients with polycythemia vera, and 50% of patients with essential thrombocytosis and myelofibrosis. Jak3 is important in lymphoid development and myeloid cell differentiation. Inactivating mutations in Jak3 have been reported in humans with severe combined immunodeficiency (SCID). Length = 258

>gnl|CDD|173643 cd05077, PTK_Jak1_rpt1, Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

 Score = 41.9 bits (98), Expect = 6e-06
 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 2/64 (3%)

Query: 4   WMAPECLVDG-LFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           W+APEC+ D    S  +D W+FG  LWEI   G+ P   +T  +   +  G   L  P +
Sbjct: 174 WIAPECVEDSKNLSIAADKWSFGTTLWEICYNGEIPLKDKTLAEKERFYEGQCMLVTP-S 232

Query: 63  CSHL 66
           C  L
Sbjct: 233 CKEL 236

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak1 is widely expressed in many tissues. Many cytokines are dependent on Jak1 for signaling, including those that use the shared receptor subunits common gamma chain (IL-2, IL-4, IL-7, IL-9, IL-15, IL-21) and gp130 (IL-6, IL-11, oncostatin M, G-CSF, and IFNs, among others). The many varied interactions of Jak1 and its ubiquitous expression suggest many biological roles. Jak1 is important in neurological development, as well as in lymphoid development and function. It also plays a role in the pathophysiology of cardiac hypertrophy and heart failure. A mutation in the ATP-binding site of Jak1 was identified in a human uterine leiomyosarcoma cell line, resulting in defective cytokine induction and antigen presentation, thus allowing the tumor to evade the immune system. Length = 262

>gnl|CDD|173661 cd05570, STKc_PKC, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

 Score = 42.0 bits (99), Expect = 6e-06
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVR 52
           ++APE L    +    D WA GVLL+E+++ GQ P+      ++   + 
Sbjct: 162 YIAPEILSYQPYGPAVDWWALGVLLYEMLA-GQSPFEGDDEDELFQSIL 209

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only require PS. PKCs phosphorylate and modify the activities of a wide variety of cellular proteins including receptors, enzymes, cytoskeletal proteins, transcription factors, and other kinases. They play a central role in signal transduction pathways that regulate cell migration and polarity, proliferation, differentiation, and apoptosis. Also included in this subfamily are the PKC-like proteins, called PKNs. Length = 318

>gnl|CDD|133207 cd05076, PTK_Tyk2_rpt1, Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

 Score = 41.4 bits (97), Expect = 1e-05
 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 2/64 (3%)

Query: 4   WMAPECLVDGL-FSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           W+APEC+  G   S+ +D W+FG  L EI   G+ P   RT  +   +     RL  P+ 
Sbjct: 186 WIAPECVPGGNSLSTAADKWSFGTTLLEICFDGEVPLKERTPSEKERFYEKKHRLPEPS- 244

Query: 63  CSHL 66
           C  L
Sbjct: 245 CKEL 248

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Tyk2 is widely expressed in many tissues. It is involved in signaling via the cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell surface urokinase receptor (uPAR) signaling and plays a role in modulating vascular smooth muscle cell (VSMC) functional behavior in response to injury. Tyk2 is also important in dendritic cell function and T helper (Th)1 cell differentiation. A homozygous mutation of Tyk2 was found in a patient with hyper-IgE syndrome (HIES), a primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and elevated serum IgE. This suggests that Tyk2 may play important roles in multiple cytokine signaling involved in innate and adaptive immunity. Length = 274

>gnl|CDD|173709 cd05619, STKc_nPKC_theta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

 Score = 40.7 bits (95), Expect = 2e-05
 Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVR 52
           ++APE L+   +++  D W+FGVLL+E M +GQ P+      ++   +R
Sbjct: 162 YIAPEILLGQKYNTSVDWWSFGVLLYE-MLIGQSPFHGHDEEELFQSIR 209

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. Although T-cells also express other PKC isoforms, PKC-theta is unique in that upon antigen stimulation, it is translocated to the plasma membrane at the immunological synapse, where it mediates signals essential for T-cell activation. It is essential for TCR-induced proliferation, cytokine production, T-cell survival, and the differentiation and effector function of T-helper (Th) cells, particularly Th2 and Th17. PKC-theta is being developed as a therapeutic target for Th2-mediated allergic inflammation and Th17-mediated autoimmune diseases. Length = 316

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 40.3 bits (95), Expect = 2e-05
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPY 39
           WMAPE +    +  ++D+W+ G+   E ++ G+ PY
Sbjct: 163 WMAPEVINGKPYDYKADIWSLGITAIE-LAEGKPPY 197

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

 Score = 40.1 bits (94), Expect = 2e-05
 Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGG 54
           +MAPE      +S +SD+W+ G LL+E+ +    P+ AR+  D+ + V+ G
Sbjct: 167 YMAPEVWKGRPYSYKSDIWSLGCLLYEMATF-APPFEARSMQDLRYKVQRG 216

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, and it regulates cell size, through influencing the size threshold at which cells commit to mitosis. Length = 256

>gnl|CDD|173683 cd05592, STKc_nPKC_theta_delta, Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

 Score = 40.2 bits (94), Expect = 3e-05
 Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 1/36 (2%)

Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPY 39
           ++APE L    ++   D W+FGVLL+E M +GQ P+
Sbjct: 162 YIAPEILKGQKYNESVDWWSFGVLLYE-MLIGQSPF 196

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. Length = 316

>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

 Score = 39.6 bits (93), Expect = 4e-05
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 6/53 (11%)

Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYP-----ARTNVDVLHYV 51
           +MAPE +    +S +SD+W+ G+ L E ++ G+ PYP          ++L Y+
Sbjct: 165 YMAPERIQGNDYSVKSDIWSLGLSLIE-LATGRFPYPPENDPPDGIFELLQYI 216

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residues. There are three MAPK subfamilies: extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In mammalian cells, there are seven MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily can be activated by at least two cognate MAPKKs and by multiple MAPKKKs. Length = 265

>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

 Score = 39.5 bits (93), Expect = 4e-05
 Identities = 10/35 (28%), Positives = 23/35 (65%), Gaps = 1/35 (2%)

Query: 5   MAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPY 39
           ++PE L +      SD+WA G +++++++ G+ P+
Sbjct: 189 VSPELLNEKPAGKSSDLWALGCIIYQMLT-GKPPF 222

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280

>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

 Score = 38.8 bits (91), Expect = 7e-05
 Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGG 54
           +M+PE L    +  +SD+W+ G L++E+ +L   P+ AR  + +   ++ G
Sbjct: 176 YMSPEQLNHMSYDEKSDIWSLGCLIYELCAL-SPPFTARNQLQLASKIKEG 225

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exit. NIMA is involved in nuclear membrane fission. Vertebrate Nek2 is a cell cycle-regulated STK, localized in centrosomes and kinetochores, that regulates centrosome splitting at the G2/M phase. It also interacts with other mitotic kinases such as Polo-like kinase 1 and may play a role in spindle checkpoint. An increase in the expression of the human NEK2 gene is strongly associated with the progression of non-Hodgkin lymphoma. Length = 265

>gnl|CDD|173743 cd07846, STKc_CDKL2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

 Score = 38.9 bits (91), Expect = 7e-05
 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 3/52 (5%)

Query: 2   TRWM-APECLV-DGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYV 51
           TRW  APE LV D  +    D+WA G L+ E M  G+  +P  +++D L+++
Sbjct: 163 TRWYRAPELLVGDTKYGRAVDIWAVGCLVTE-MLTGEPLFPGDSDIDQLYHI 213

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKIAMRE (NKIATRE in rat), by translocation is associated with mild mental retardation. It has been reported that CDKL3 is lost in leukemic cells having a chromosome arm 5q deletion, and may contribute to the transformed phenotype. Length = 286

>gnl|CDD|132990 cd06659, STKc_PAK6, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

 Score = 38.9 bits (90), Expect = 8e-05
 Identities = 14/49 (28%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVR 52
           WMAPE +    + ++ D+W+ G+++ E++  G+ PY + + V  +  +R
Sbjct: 183 WMAPEVISRTPYGTEVDIWSLGIMVIEMVD-GEPPYFSDSPVQAMKRLR 230

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role in stress responses through its activation by the mitogen-activated protein kinase (MAPK) p38 and MAPK kinase 6 (MKK6) pathway. PAK6 is highly expressed in the brain. It is not required for viability, but together with PAK5, it is required for normal levels of locomotion and activity, and for learning and memory. Increased expression of PAK6 is found in primary and metastatic prostate cancer. PAK6 may play a role in the regulation of motility. Length = 297

>gnl|CDD|173681 cd05590, STKc_nPKC_eta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

 Score = 38.7 bits (90), Expect = 9e-05
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVL 48
           ++APE L + L+    D WA GVLL+E++  G  P+ A    D+ 
Sbjct: 162 YIAPEILQEMLYGPSVDWWAMGVLLYEMLC-GHAPFEAENEDDLF 205

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signaling of cell-type specific differentiation. It is also expressed in pro-B cells and early-stage thymocytes, and acts as a key regulator in early B-cell development. PKC-eta increases glioblastoma multiforme (GBM) proliferation and resistance to radiation, and is being developed as a therapeutic target for the management of GBM. Length = 320

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score = 38.3 bits (90), Expect = 1e-04
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 5/43 (11%)

Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPY----PAR 42
           WMAPE +    +  + D+W+ G++  E M+ G+ PY    P R
Sbjct: 182 WMAPEVIKRKDYGPKVDIWSLGIMCIE-MAEGEPPYLREPPLR 223

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|132946 cd06615, PKc_MEK, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

 Score = 38.2 bits (89), Expect = 1e-04
 Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 2/41 (4%)

Query: 2   TR-WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPA 41
           TR +M+PE L    ++ QSD+W+ G+ L E M++G+ P P 
Sbjct: 161 TRSYMSPERLQGTHYTVQSDIWSLGLSLVE-MAIGRYPIPP 200

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the downstream targets, ERK(extracellular signal-regulated kinase) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1/2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. This cascade has also been implicated in synaptic plasticity, migration, morphological determination, and stress response immunological reactions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1/2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 308

>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

 Score = 38.3 bits (89), Expect = 1e-04
 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 2/51 (3%)

Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVD-VLHYVRG 53
           +++PE   D  ++ +SDVWA GV+L+E    G+ P+ A      +L  +RG
Sbjct: 167 YLSPELCEDKPYNEKSDVWALGVVLYE-CCTGKHPFDANNQGALILKIIRG 216

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cycle progression. No cellular function has yet been ascribed to CNK4. Length = 256

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 37.9 bits (89), Expect = 2e-04
 Identities = 9/30 (30%), Positives = 21/30 (70%)

Query: 5   MAPECLVDGLFSSQSDVWAFGVLLWEIMSL 34
           ++PE   +  ++ +SD+W+ G +L+E+ +L
Sbjct: 170 LSPELCQNKPYNYKSDIWSLGCVLYELCTL 199

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|173668 cd05577, STKc_GRK, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

 Score = 37.9 bits (88), Expect = 2e-04
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPAR 42
           +MAPE L   ++    D +A G  L+E M  G+ P+  R
Sbjct: 160 YMAPEVLQGEVYDFSVDWFALGCTLYE-MIAGRSPFRQR 197

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of G protein signaling) homology (RH) domain and several motifs. The C-terminus diverges among different groups of GRKs. There are seven types of GRKs, named GRK1 to GRK7. They are subdivided into three main groups: visual (GRK1/7); beta-adrenergic receptor kinases (GRK2/3); and GRK4-like (GRK4/5/6). Expression of GRK2/3/5/6 is widespread while GRK1/4/7 show a limited tissue distribution. The substrate spectrum of the widely expressed GRKs partially overlaps. GRKs play important roles in the cardiovascular, immune, respiratory, skeletal, and nervous systems. Length = 277

>gnl|CDD|173682 cd05591, STKc_nPKC_epsilon, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

 Score = 37.5 bits (87), Expect = 2e-04
 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 5/50 (10%)

Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVD----VLH 49
           ++APE L +  +    D WA GVL++E+M+ GQ P+ A    D    +LH
Sbjct: 162 YIAPEILQELEYGPSVDWWALGVLMYEMMA-GQPPFEADNEDDLFESILH 210

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to neoplastic transformation depending on the cell type. It contributes to oncogenesis by inducing disordered cell growth and inhibiting cell death. It also plays a role in tumor invasion and metastasis. PKC-epsilon has also been found to confer cardioprotection against ischemia and reperfusion-mediated damage. Other cellular functions include the regulation of gene expression, cell adhesion, and cell motility. Length = 321

>gnl|CDD|132986 cd06655, STKc_PAK2, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

 Score = 37.8 bits (87), Expect = 2e-04
 Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 4/87 (4%)

Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG--RLNRPA 61
           WMAPE +    +  + D+W+ G++  E++  G+ PY     +  L+ +   G   L  P 
Sbjct: 181 WMAPEVVTRKAYGPKVDIWSLGIMAIEMVE-GEPPYLNENPLRALYLIATNGTPELQNPE 239

Query: 62  NCSHLIRS-RNRLTENKAPSAVSKKRI 87
             S + R   NR  E       S K +
Sbjct: 240 KLSPIFRDFLNRCLEMDVEKRGSAKEL 266

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK2 plays a role in pro-apoptotic signaling. It is cleaved and activated by caspases leading to morphological changes during apoptosis. PAK2 is also activated in response to a variety of stresses including DNA damage, hyperosmolarity, serum starvation, and contact inhibition, and may play a role in coordinating the stress response. PAK2 also contributes to cancer cell invasion through a mechanism distinct from that of PAK1. Length = 296

>gnl|CDD|173710 cd05620, STKc_nPKC_delta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

 Score = 37.6 bits (87), Expect = 2e-04
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 9/57 (15%)

Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPA--------RTNVDVLHYVR 52
           ++APE L    ++   D W+FGVLL+E M +GQ P+             VD  HY R
Sbjct: 162 YIAPEILQGLKYTFSVDWWSFGVLLYE-MLIGQSPFHGDDEDELFESIRVDTPHYPR 217

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. It slows down cell proliferation, inducing cell cycle arrest and enhancing cell differentiation. PKC-delta is also involved in the regulation of transcription as well as immune and inflammatory responses. It plays a central role in the genotoxic stress response that leads to DNA damaged-induced apoptosis. Length = 316

>gnl|CDD|132985 cd06654, STKc_PAK1, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

 Score = 37.4 bits (86), Expect = 2e-04
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 3/67 (4%)

Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG--RLNRPA 61
           WMAPE +    +  + D+W+ G++  E++  G+ PY     +  L+ +   G   L  P 
Sbjct: 182 WMAPEVVTRKAYGPKVDIWSLGIMAIEMIE-GEPPYLNENPLRALYLIATNGTPELQNPE 240

Query: 62  NCSHLIR 68
             S + R
Sbjct: 241 KLSAIFR 247

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK1 is important in the regulation of many cellular processes including cytoskeletal dynamics, cell motility, growth, and proliferation. Although PAK1 has been regarded mainly as a cytosolic protein, recent reports indicate that PAK1 also exists in significant amounts in the nucleus, where it is involved in transcription modulation and in cell cycle regulatory events. PAK1 is also involved in transformation and tumorigenesis. Its overexpression, hyperactivation and increased nuclear accumulation is correlated to breast cancer invasiveness and progression. Nuclear accumulation is also linked to tamoxifen resistance in breast cancer cells. Length = 296

>gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

 Score = 36.5 bits (85), Expect = 4e-04
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTN 44
           +MAPE L    +S   D W+ GV  +E +  G++PY   + 
Sbjct: 165 YMAPEVLCRQGYSVAVDWWSLGVTAYECL-RGKRPYRGHSR 204

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. Length = 258

>gnl|CDD|132987 cd06656, STKc_PAK3, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

 Score = 36.6 bits (84), Expect = 5e-04
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 4/75 (5%)

Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG--RLNRPA 61
           WMAPE +    +  + D+W+ G++  E++  G+ PY     +  L+ +   G   L  P 
Sbjct: 181 WMAPEVVTRKAYGPKVDIWSLGIMAIEMVE-GEPPYLNENPLRALYLIATNGTPELQNPE 239

Query: 62  NCSHLIRS-RNRLTE 75
             S + R   NR  E
Sbjct: 240 RLSAVFRDFLNRCLE 254

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK3 is highly expressed in the brain. It is implicated in neuronal plasticity, synapse formation, dendritic spine morphogenesis, cell cycle progression, neuronal migration, and apoptosis. Inactivating mutations in the PAK3 gene cause X-linked non-syndromic mental retardation, the severity of which depends on the site of the mutation. Length = 297

>gnl|CDD|132962 cd06631, STKc_YSK4, Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

 Score = 36.4 bits (84), Expect = 5e-04
 Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 2/53 (3%)

Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGR 56
           WMAPE + +  +  +SD+W+ G  ++E M+ G+ P  +   +  + Y+ G  R
Sbjct: 174 WMAPEVINESGYGRKSDIWSIGCTVFE-MATGKPPLASMDRLAAMFYI-GAHR 224

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Length = 265

>gnl|CDD|132972 cd06641, STKc_MST3, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

 Score = 36.2 bits (83), Expect = 6e-04
 Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 1/77 (1%)

Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPANC 63
           WMAPE +    + S++D+W+ G+   E ++ G+ P+     + VL  +          N 
Sbjct: 167 WMAPEVIKQSAYDSKADIWSLGITAIE-LAKGEPPHSELHPMKVLFLIPKNNPPTLEGNY 225

Query: 64  SHLIRSRNRLTENKAPS 80
           S  ++       NK PS
Sbjct: 226 SKPLKEFVEACLNKEPS 242

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and intrauterine growth retardation. Length = 277

>gnl|CDD|132991 cd06917, STKc_NAK1_like, Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

 Score = 36.3 bits (84), Expect = 6e-04
 Identities = 14/37 (37%), Positives = 26/37 (70%), Gaps = 2/37 (5%)

Query: 4   WMAPECLVDG-LFSSQSDVWAFGVLLWEIMSLGQQPY 39
           WMAPE + +G  + +++D+W+ G+ ++E M+ G  PY
Sbjct: 167 WMAPEVITEGKYYDTKADIWSLGITIYE-MATGNPPY 202

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of centrin, and phosphorylates substrates in a Cdc31p-dependent manner. Length = 277

>gnl|CDD|132971 cd06640, STKc_MST4, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

 Score = 36.2 bits (83), Expect = 7e-04
 Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 7/80 (8%)

Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPANC 63
           WMAPE +    + S++D+W+ G+   E ++ G+ P      + VL  +    + N P   
Sbjct: 167 WMAPEVIQQSAYDSKADIWSLGITAIE-LAKGEPPNSDMHPMRVLFLIP---KNNPPTLT 222

Query: 64  SHLIRSRNRLTE---NKAPS 80
               +      +   NK PS
Sbjct: 223 GEFSKPFKEFIDACLNKDPS 242

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by interacting with the Golgi matrix protein GM130 and may play a role in cell migration. Length = 277

>gnl|CDD|132953 cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

 Score = 36.0 bits (83), Expect = 8e-04
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 7/50 (14%)

Query: 4   WMAPECLVDG------LFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDV 47
           +MAPE +  G       ++ QSDVW+ G+ + E M+LG+ PYP  T  ++
Sbjct: 167 YMAPERIKSGGPNQNPTYTVQSDVWSLGLSILE-MALGRYPYPPETYANI 215

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Polymyxin B resistance protein 2 (PBS2) from Saccharomyces cerevisiae, Wis1 from Schizosaccharomyces pombe, and related proteins. PBS2 and Wis1 are components of stress-activated MAPK cascades in budding and fission yeast, respectively. PBS2 is the specific activator of the MAPK Hog1, which plays a central role in the response of budding yeast to stress including exposure to arsenite and hyperosmotic environments. Wis1 phosphorylates and activates the MAPK Sty1 (also called Spc1 or Phh1), which stimulates a transcriptional response to a wide range of cellular insults through the bZip transcription factors Atf1, Pcr1, and Pap1. Length = 286

>gnl|CDD|132950 cd06619, PKc_MKK5, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

 Score = 36.0 bits (83), Expect = 8e-04
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYP 40
           +MAPE +    +   SDVW+ G+   E ++LG+ PYP
Sbjct: 159 YMAPERISGEQYGIHSDVWSLGISFME-LALGRFPYP 194

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that phosphorylates its downstream target, extracellular signal-regulated kinase 5 (ERK5), on specific threonine and tyrosine residues. MKK5 is activated by MEKK2 and MEKK3 in response to mitogenic and stress stimuli. The ERK5 cascade promotes cell proliferation, differentiation, neuronal survival, and neuroprotection. This cascade plays an essential role in heart development. Mice deficient in either ERK5 or MKK5 die around embryonic day 10 due to cardiovascular defects including underdevelopment of the myocardium. In addition, MKK5 is associated with metastasis and unfavorable prognosis in prostate cancer. Length = 279

>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

 Score = 35.8 bits (83), Expect = 0.001
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 3/53 (5%)

Query: 2   TRWM-APECLV-DGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVR 52
           TRW  APE LV D  +    DVWA G ++ E +  G+  +P  +++D L+ ++
Sbjct: 164 TRWYRAPELLVGDTNYGKPVDVWAIGCIMAE-LLDGEPLFPGDSDIDQLYLIQ 215

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning and memory. Length = 288

>gnl|CDD|173678 cd05587, STKc_cPKC, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

 Score = 35.5 bits (82), Expect = 0.001
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPY 39
           ++APE +    +    D WAFGVLL+E M  GQ P+
Sbjct: 167 YIAPEIIAYQPYGKSVDWWAFGVLLYE-MLAGQPPF 201

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory domain. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. cPKCs are potent kinases for histones, myelin basic protein, and protamine. PKC-gamma is mainly expressed in neuronal tissues. It plays a role in protection from ischemia. Length = 324

>gnl|CDD|173707 cd05616, STKc_cPKC_beta, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

 Score = 35.4 bits (81), Expect = 0.001
 Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 1/36 (2%)

Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPY 39
           ++APE +    +    D WAFGVLL+E+++ GQ P+
Sbjct: 167 YIAPEIIAYQPYGKSVDWWAFGVLLYEMLA-GQAPF 201

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. The PKC beta isoforms (I and II), generated by alternative splicing of a single gene, are preferentially activated by hyperglycemia-induced DAG in retinal tissues. This is implicated in diabetic microangiopathy such as ischemia, neovascularization, and abnormal vasodilator function. PKC-beta also plays an important role in VEGF signaling. In addition, glucose regulates proliferation in retinal endothelial cells via PKC-betaI. PKC-beta is also being explored as a therapeutic target in cancer. It contributes to tumor formation and is involved in the tumor host mechanisms of inflammation and angiogenesis. Length = 323

>gnl|CDD|132979 cd06648, STKc_PAK_II, Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

 Score = 34.7 bits (80), Expect = 0.002
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPY 39
           WMAPE +    + ++ D+W+ G+++ E M  G+ PY
Sbjct: 181 WMAPEVISRLPYGTEVDIWSLGIMVIE-MVDGEPPY 215

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs found in group I PAKs, such as an AID (autoinhibitory domain) and SH3 binding sites. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. While group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX, no such binding has been demonstrated for group II PAKs. Some known substrates of group II PAKs are also substrates of group I PAKs such as Raf, BAD, LIMK and GEFH1. Unique group II substrates include MARK/Par-1 and PDZ-RhoGEF. Group II PAKs play important roles in filopodia formation, neuron extension, cytoskeletal organization, and cell survival. Length = 285

>gnl|CDD|173719 cd05630, STKc_GRK6, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

 Score = 35.0 bits (80), Expect = 0.002
 Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPAR 42
           +MAPE + +  ++   D WA G LL+E+++ GQ P+  R
Sbjct: 167 YMAPEVVKNERYTFSPDWWALGCLLYEMIA-GQSPFQQR 204

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK6 plays important roles in the regulation of dopamine, M3 muscarinic, opioid, and chemokine receptor signaling. It also plays maladaptive roles in addiction and Parkinson's disease. GRK6-deficient mice exhibit altered dopamine receptor regulation, decreased lymphocyte chemotaxis, and increased acute inflammation and neutrophil chemotaxis. Length = 285

>gnl|CDD|132981 cd06650, PKc_MEK1, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

 Score = 34.6 bits (79), Expect = 0.002
 Identities = 16/37 (43%), Positives = 25/37 (67%), Gaps = 1/37 (2%)

Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYP 40
           +M+PE L    +S QSD+W+ G+ L E M++G+ P P
Sbjct: 168 YMSPERLQGTHYSVQSDIWSMGLSLVE-MAIGRYPIP 203

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase (ERK) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. MEK1 also plays a role in cell cycle control. Length = 333

>gnl|CDD|132947 cd06616, PKc_MKK4, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

 Score = 34.6 bits (80), Expect = 0.003
 Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 6/46 (13%)

Query: 4   WMAPECL----VDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNV 45
           +MAPE +     DG +  +SDVW+ G+ L+E+ + G+ PYP   +V
Sbjct: 173 YMAPERIDPSARDG-YDVRSDVWSLGITLYEV-ATGKFPYPKWNSV 216

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates the downstream targets, c-Jun N-terminal kinase (JNK) and p38 MAPK, on specific threonine and tyrosine residues. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. Their activation is associated with the induction of cell death. Mice deficient in MKK4 die during embryogenesis and display anemia, severe liver hemorrhage, and abnormal hepatogenesis. MKK4 may also play roles in the immune system and in cardiac hypertrophy. It plays a major role in cancer as a tumor and metastasis suppressor. Under certain conditions, MKK4 is pro-oncogenic. Length = 288

>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases

 Score = 34.4 bits (80), Expect = 0.003
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 5   MAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTN 44
           +APE L+   +    D W+ GVLL+E+++ G+ P+ A   
Sbjct: 160 LAPEVLLGKGYGKAVDWWSLGVLLYEMLT-GKPPFYAEDR 198

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250

>gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

 Score = 34.3 bits (79), Expect = 0.003
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 6/53 (11%)

Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTN-----VDVLHYV 51
           +MAPE +    +S  SDVW+ G+ L E+ +  + P+P         +++L Y+
Sbjct: 169 YMAPERIQGKPYSITSDVWSLGLTLLEV-AQNRFPFPPEGEPPLGPIELLSYI 220

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Pek1/Skh1 from Schizosaccharomyces pombe and MKK2 from Saccharomyces cerevisiae, and related proteins. Both fission yeast Pek1 and baker's yeast MKK2 are components of the cell integrity MAPK pathway. In fission yeast, Pek1 phosphorylates and activates the MAPK Pmk1/Spm1 and is regulated by the MAPKKK Mkh1. In baker's yeast, the pathway involves the MAPK Slt2, the MAPKKs MKK1 and MKK2, and the MAPKKK Bck1. The cell integrity MAPK cascade is activated by multiple stress conditions, and is essential in cell wall construction, morphogenesis, cytokinesis, and ion homeostasis. Length = 287

>gnl|CDD|173714 cd05625, STKc_LATS1, Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

 Score = 34.6 bits (79), Expect = 0.003
 Identities = 16/43 (37%), Positives = 29/43 (67%), Gaps = 1/43 (2%)

Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVD 46
           ++APE L+   ++   D W+ GV+L+E M +GQ P+ A+T ++
Sbjct: 214 YIAPEVLLRTGYTQLCDWWSVGVILYE-MLVGQPPFLAQTPLE 255

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype and poor prognosis. LATS1 induces G2 arrest and promotes cytokinesis. It may be a component of the mitotic exit network in higher eukaryotes. Length = 382

>gnl|CDD|173677 cd05586, STKc_Sck1_like, Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

 Score = 34.5 bits (79), Expect = 0.003
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)

Query: 2   TRWMAPECLVDGL-FSSQSDVWAFGVLLWEIMSLGQQPYPA 41
           T ++APE L+D   ++   D W+ GVL++E M  G  P+ A
Sbjct: 160 TEYLAPEVLLDEKGYTKHVDFWSLGVLVFE-MCCGWSPFYA 199

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of yeast to environmental changes. Length = 330

>gnl|CDD|173721 cd05632, STKc_GRK5, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

 Score = 34.2 bits (78), Expect = 0.003
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPAR 42
           +MAPE L +  ++   D W  G L++E++  GQ P+  R
Sbjct: 167 YMAPEVLNNQRYTLSPDYWGLGCLIYEMIE-GQSPFRGR 204

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with the membrane though an N-terminal PIP2 binding domain and also binds phospholipids via its C-terminus. GRK5 deficiency is associated with early Alzheimer's disease in humans and mouse models. GRK5 also plays a crucial role in the pathogenesis of sporadic Parkinson's disease. It participates in the regulation and desensitization of PDGFRbeta, a receptor tyrosine kinase involved in a variety of downstream cellular effects including cell growth, chemotaxis, apoptosis, and angiogenesis. GRK5 also regulates Toll-like receptor 4, which is involved in innate and adaptive immunity. Length = 285

>gnl|CDD|173706 cd05615, STKc_cPKC_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

 Score = 34.2 bits (78), Expect = 0.003
 Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 1/36 (2%)

Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPY 39
           ++APE +    +    D WA+GVLL+E+++ GQ P+
Sbjct: 167 YIAPEIIAYQPYGKSVDWWAYGVLLYEMLA-GQPPF 201

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. PKC-alpha is expressed in many tissues and is associated with cell proliferation, apoptosis, and cell motility. It plays a role in the signaling of the growth factors PDGF, VEGF, EGF, and FGF. Abnormal levels of PKC-alpha have been detected in many transformed cell lines and several human tumors. In addition, PKC-alpha is required for HER2 dependent breast cancer invasion. Length = 323

>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

 Score = 34.0 bits (79), Expect = 0.004
 Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 5/51 (9%)

Query: 2   TRWM-APECLV-DGLFSSQSDVWAFGVLLWEIMSLGQQP-YPARTNVDVLH 49
           TRW  APE L+    +SS  D+WA G ++ E+ +L  +P +P  + +D L+
Sbjct: 161 TRWYRAPEILLRSTSYSSPVDIWALGCIMAELYTL--RPLFPGSSEIDQLY 209

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertility. It functions as a coactivator of the androgen receptor in prostate cells. MRK, also called Intestinal Cell Kinase (ICK), is expressed ubiquitously, with highest expression in the ovary and uterus. A missense mutation in MRK causes endocrine-cerebro-osteodysplasia (ECO), suggesting that this protein plays an important role in the development of many organs. MAK and MRK may be involved in regulating cell cycle and cell fate. Ime2p is a meiosis-specific kinase that is important during meiotic initiation and during the later stages of meiosis. Mde3 functions downstream of the transcription factor Mei-4 which is essential for meiotic prophase I. Length = 283

>gnl|CDD|132978 cd06647, STKc_PAK_I, Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

 Score = 34.1 bits (78), Expect = 0.004
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPY 39
           WMAPE +    +  + D+W+ G++  E M  G+ PY
Sbjct: 181 WMAPEVVTRKAYGPKVDIWSLGIMAIE-MVEGEPPY 215

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs, also called conventional PAKs, include PAK1, PAK2, and PAK3. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). They interact with the SH3 domain containing proteins Nck, Grb2 and PIX. Binding of group I PAKs to activated GTPases leads to conformational changes that destabilize the AID, allowing autophosphorylation and full activation of the kinase domain. Known group I PAK substrates include MLCK, Bad, Raf, MEK1, LIMK, Merlin, Vimentin, Myc, Stat5a, and Aurora A, among others. Length = 293

>gnl|CDD|132980 cd06649, PKc_MEK2, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

 Score = 33.9 bits (77), Expect = 0.004
 Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 1/37 (2%)

Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYP 40
           +M+PE L    +S QSD+W+ G+ L E +++G+ P P
Sbjct: 168 YMSPERLQGTHYSVQSDIWSMGLSLVE-LAIGRYPIP 203

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase (ERK) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 331

>gnl|CDD|140293 PTZ00267, PTZ00267, NIMA-related protein kinase; Provisional

 Score = 34.2 bits (78), Expect = 0.004
 Identities = 14/51 (27%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGG 54
           ++APE      +S ++D+W+ GV+L+E+++L  +P+   +  +++  V  G
Sbjct: 237 YLAPELWERKRYSKKADMWSLGVILYELLTL-HRPFKGPSQREIMQQVLYG 286

Length = 478

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	88
KOG0197|consensus	468		99.86
KOG1026|consensus	774		99.84
KOG0578|consensus	550		99.8
KOG0588|consensus	786		99.8
KOG0201|consensus	467		99.79
KOG1095|consensus	1025		99.79
KOG0575|consensus	592		99.79
KOG0581|consensus	364		99.78
KOG0591|consensus	375		99.78
KOG1024|consensus	563		99.75
KOG0196|consensus	996		99.75
KOG0200|consensus	609		99.73
KOG0033|consensus	355		99.71
KOG0694|consensus	694		99.71
KOG0582|consensus	516		99.71
PHA02988	283	hypothetical protein; Provisional	99.7
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	99.7
KOG4278|consensus	1157		99.7
KOG0610|consensus	459		99.69
KOG0598|consensus	357		99.68
KOG0199|consensus	1039		99.67
KOG0192|consensus	362		99.67
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	99.66
KOG0616|consensus	355		99.66
KOG4257|consensus	974		99.66
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	99.65
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	99.64
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	99.64
KOG0592|consensus	604		99.64
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	99.64
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	99.64
PTZ00284	467	protein kinase; Provisional	99.63
KOG0583|consensus	370		99.63
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	99.63
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	99.63
KOG0577|consensus	948		99.63
PTZ00283	496	serine/threonine protein kinase; Provisional	99.63
KOG0579|consensus	1187		99.62
KOG0597|consensus	808		99.62
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	99.62
KOG4721|consensus	904		99.62
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	99.62
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	99.62
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	99.62
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	99.62
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	99.61
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	99.61
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	99.61
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	99.61
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	99.61
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	99.61
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	99.6
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	99.6
KOG0603|consensus	612		99.6
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	99.6
PTZ00267	478	NIMA-related protein kinase; Provisional	99.6
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	99.59
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	99.59
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	99.59
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	99.59
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	99.59
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	99.59
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	99.59
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	99.59
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	99.59
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	99.59
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	99.59
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	99.58
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	99.58
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	99.58
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	99.58
KOG0589|consensus	426		99.58
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	99.58
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	99.58
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	99.58
KOG0611|consensus	668		99.58
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	99.58
KOG0605|consensus	550		99.58
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	99.58
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	99.58
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	99.58
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	99.58
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	99.58
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	99.58
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	99.57
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	99.57
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	99.57
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	99.57
PTZ00036	440	glycogen synthase kinase; Provisional	99.57
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	99.57
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	99.57
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	99.57
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	99.57
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	99.57
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	99.57
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	99.57
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	99.57
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	99.56
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	99.56
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	99.56
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	99.56
KOG4717|consensus	864		99.56
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	99.56
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	99.56
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	99.56
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	99.56
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	99.56
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	99.56
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	99.56
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	99.56
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	99.56
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	99.55
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	99.55
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	99.55
PTZ00263	329	protein kinase A catalytic subunit; Provisional	99.55
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	99.55
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	99.55
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	99.55
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	99.55
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	99.55
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	99.55
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	99.55
KOG0574|consensus	502		99.55
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	99.55
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	99.55
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	99.55
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	99.54
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	99.54
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	99.54
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	99.54
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	99.54
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	99.54
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	99.54
KOG0194|consensus	474		99.54
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	99.54
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	99.54
KOG0198|consensus	313		99.54
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	99.54
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	99.54
KOG0032|consensus	382		99.54
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	99.54
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	99.54
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	99.53
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	99.53
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	99.53
KOG1989|consensus	738		99.53
KOG0696|consensus	683		99.53
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	99.53
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	99.53
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	99.53
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	99.53
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	99.53
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	99.52
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	99.52
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	99.52
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	99.52
KOG0599|consensus	411		99.52
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	99.52
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	99.52
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	99.52
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	99.52
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	99.52
KOG1025|consensus	1177		99.52
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	99.51
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	99.51
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	99.51
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	99.51
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	99.51
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	99.51
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	99.51
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	99.51
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	99.51
KOG0615|consensus	475		99.51
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	99.5
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	99.5
PHA02882	294	putative serine/threonine kinase; Provisional	99.5
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	99.5
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	99.5
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	99.5
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	99.5
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	99.5
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	99.5
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	99.5
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	99.5
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	99.49
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	99.49
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	99.49
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	99.49
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	99.49
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	99.49
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	99.49
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	99.49
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	99.49
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	99.49
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	99.49
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	99.49
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	99.49
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	99.48
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	99.48
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	99.48
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	99.48
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	99.48
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	99.48
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	99.47
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	99.47
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	99.47
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	99.47
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	99.47
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	99.47
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	99.47
PTZ00266	1021	NIMA-related protein kinase; Provisional	99.47
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	99.47
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	99.47
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	99.47
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	99.47
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	99.47
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	99.47
KOG0580|consensus	281		99.47
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	99.47
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	99.46
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	99.46
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	99.46
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	99.46
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	99.46
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	99.46
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	99.46
KOG0595|consensus	429		99.46
KOG0690|consensus	516		99.46
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	99.45
KOG0983|consensus	391		99.45
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	99.45
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	99.45
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	99.45
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	99.45
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	99.45
KOG4279|consensus	1226		99.45
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	99.45
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	99.45
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	99.45
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	99.45
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	99.45
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	99.45
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	99.45
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	99.45
KOG0596|consensus	677		99.44
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	99.44
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	99.44
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	99.44
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	99.44
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	99.44
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	99.44
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	99.43
PHA03212	391	serine/threonine kinase US3; Provisional	99.43
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	99.43
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	99.43
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	99.43
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	99.43
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	99.42
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	99.42
KOG2345|consensus	302		99.42
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	99.42
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	99.42
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	99.42
PLN00034	353	mitogen-activated protein kinase kinase; Provision	99.42
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	99.42
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	99.42
PHA03207	392	serine/threonine kinase US3; Provisional	99.41
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	99.41
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	99.41
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	99.41
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	99.41
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	99.41
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	99.41
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	99.41
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	99.41
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	99.41
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	99.41
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	99.41
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	99.41
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	99.4
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	99.4
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	99.4
KOG0660|consensus	359		99.4
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	99.4
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	99.4
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	99.4
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	99.4
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	99.4
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	99.4
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	99.39
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	99.39
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	99.39
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	99.39
PHA03209	357	serine/threonine kinase US3; Provisional	99.39
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	99.39
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	99.39
KOG0661|consensus	538		99.39
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	99.39
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	99.39
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	99.38
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	99.38
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	99.38
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	99.38
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	99.38
PLN00181	793	protein SPA1-RELATED; Provisional	99.38
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	99.37
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	99.37
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	99.37
PHA03211	461	serine/threonine kinase US3; Provisional	99.36
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	99.36
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	99.36
KOG0193|consensus	678		99.36
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	99.36
KOG4645|consensus	1509		99.36
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	99.36
PTZ00024	335	cyclin-dependent protein kinase; Provisional	99.36
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	99.36
PLN00009	294	cyclin-dependent kinase A; Provisional	99.36
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	99.36
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	99.36
KOG0585|consensus	576		99.36
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	99.36
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	99.35
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	99.35
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	99.35
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	99.35
KOG0986|consensus	591		99.35
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	99.35
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	99.35
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	99.34
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	99.33
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	99.33
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	99.33
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	99.33
KOG0604|consensus	400		99.33
KOG0593|consensus	396		99.33
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	99.33
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	99.33
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	99.33
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	99.32
PHA03210	501	serine/threonine kinase US3; Provisional	99.32
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	99.32
KOG0614|consensus	732		99.31
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	99.31
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	99.3
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	99.3
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	99.3
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	99.29
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	99.29
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	99.29
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	99.29
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	99.29
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	99.28
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	99.28
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	99.27
KOG0659|consensus	318		99.27
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	99.25
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	99.25
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	99.24
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	99.23
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	99.23
KOG1035|consensus	1351		99.23
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.22
KOG0600|consensus	560		99.21
KOG0671|consensus	415		99.19
KOG0586|consensus	596		99.19
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	99.17
KOG1290|consensus	590		99.16
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	99.15
KOG0195|consensus	448		99.14
KOG0695|consensus	593		99.14
KOG0587|consensus	953		99.09
KOG1094|consensus	807		99.08
KOG0667|consensus	586		99.08
KOG0658|consensus	364		99.06
KOG0594|consensus	323		99.06
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	99.03
KOG0612|consensus	1317		99.02
KOG0663|consensus	419		99.02
KOG0584|consensus	632		99.01
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	98.99
KOG1006|consensus	361		98.99
KOG0607|consensus	463		98.97
KOG0606|consensus	1205		98.89
KOG0984|consensus	282		98.89
KOG1027|consensus	903		98.88
KOG0665|consensus	369		98.85
KOG0669|consensus	376		98.8
KOG0576|consensus	829		98.8
KOG0666|consensus	438		98.67
KOG0670|consensus	752		98.66
KOG0608|consensus	1034		98.63
KOG1240|consensus	1431		98.59
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	98.56
KOG4236|consensus	888		98.55
KOG1187|consensus	361		98.46
KOG0664|consensus	449		98.44
KOG1033|consensus	516		98.42
PLN03224	507	probable serine/threonine protein kinase; Provisio	98.4
KOG0603|consensus	612		98.38
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	98.38
KOG0662|consensus	292		98.35
KOG1151|consensus	775		98.32
KOG0668|consensus	338		98.31
KOG0590|consensus	601		98.29
KOG4250|consensus	732		98.24
KOG2052|consensus	513		98.23
KOG1023|consensus	484		98.23
KOG3653|consensus	534		98.02
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	97.93
KOG4158|consensus	598		97.82
KOG1152|consensus	772		97.67
KOG0606|consensus	1205		97.67
COG0515	384	SPS1 Serine/threonine protein kinase [General func	97.06
KOG1167|consensus	418		96.32
KOG1345|consensus	378		95.41
KOG2137|consensus	700		95.16
KOG1266|consensus	458		94.78
KOG1164|consensus	322		93.22
KOG0590|consensus	601		91.84
KOG1167|consensus	418		82.42

>KOG0197|consensus

Probab=99.86  E-value=1e-21  Score=108.93  Aligned_cols=84  Identities=40%  Similarity=0.798  Sum_probs=75.8

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCChHHHHHHHhhC----ccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPANCSHLIRSRNRLT----ENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~----~~~   77 (88)
                      ++|.|||.++..+|+.++|+||||+++++++++|+.||.+....+++..+.+|++.+.|..|++.+++++..|    |++
T Consensus       368 IkWtAPEa~~~~~FS~kSDVWSFGVlL~E~fT~G~~py~~msn~ev~~~le~GyRlp~P~~CP~~vY~lM~~CW~~~P~~  447 (468)
T KOG0197|consen  368 IKWTAPEALNYGKFSSKSDVWSFGVLLWELFTYGRVPYPGMSNEEVLELLERGYRLPRPEGCPDEVYELMKSCWHEDPED  447 (468)
T ss_pred             ceecCHHHHhhCCcccccceeehhhhHHHHhccCCCCCCCCCHHHHHHHHhccCcCCCCCCCCHHHHHHHHHHhhCCccc
Confidence            5899999999999999999999999999999999999999999999999999999999999999888766555    677


Q ss_pred             CCChhhhh
Q psy8478          78 APSAVSKK   85 (88)
Q Consensus        78 rp~~~~~~   85 (88)
                      |||.+.++
T Consensus       448 RPtF~~L~  455 (468)
T KOG0197|consen  448 RPTFETLR  455 (468)
T ss_pred             CCCHHHHH
Confidence            77776654

>KOG1026|consensus

Probab=99.84  E-value=6.2e-21  Score=110.45  Aligned_cols=84  Identities=40%  Similarity=0.775  Sum_probs=76.0

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCChHHHHHHHhhC----ccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPANCSHLIRSRNRLT----ENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~----~~~   77 (88)
                      ++||+||.+.+++|+..+|+|++|+++||++++|..|+.+....++++.|.++.-.+.|++|+..++.++..|    |.+
T Consensus       669 IRWMppEsIly~kFTteSDVWs~GVvLWEIFsyG~QPy~glSn~EVIe~i~~g~lL~~Pe~CP~~vY~LM~~CW~~~P~~  748 (774)
T KOG1026|consen  669 IRWMPPESILYGKFTTESDVWSFGVVLWEIFSYGKQPYYGLSNQEVIECIRAGQLLSCPENCPTEVYSLMLECWNENPKR  748 (774)
T ss_pred             eecCCHHHhhcCcccchhhhhhhhhhhhhhhccccCcccccchHHHHHHHHcCCcccCCCCCCHHHHHHHHHHhhcCccc
Confidence            6899999999999999999999999999999999999999999999999999988899999998888766655    577


Q ss_pred             CCChhhhh
Q psy8478          78 APSAVSKK   85 (88)
Q Consensus        78 rp~~~~~~   85 (88)
                      ||+..+|-
T Consensus       749 RPsF~eI~  756 (774)
T KOG1026|consen  749 RPSFKEIH  756 (774)
T ss_pred             CCCHHHHH
Confidence            88877763

>KOG0578|consensus

Probab=99.80  E-value=9.5e-20  Score=102.14  Aligned_cols=85  Identities=20%  Similarity=0.439  Sum_probs=73.9

Q ss_pred             CCcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCC--C----CCChHHHHHHHhhC
Q psy8478           1 MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNR--P----ANCSHLIRSRNRLT   74 (88)
Q Consensus         1 ~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~----~~~~~~~~~~l~~~   74 (88)
                      ++.|||||++....|+.++|||++|+..++++. |++||...++.+.+.+|..+..+..  +    ..+.+++..||+++
T Consensus       432 TPYWMAPEVvtrk~YG~KVDIWSLGIMaIEMve-GEPPYlnE~PlrAlyLIa~ng~P~lk~~~klS~~~kdFL~~cL~~d  510 (550)
T KOG0578|consen  432 TPYWMAPEVVTRKPYGPKVDIWSLGIMAIEMVE-GEPPYLNENPLRALYLIATNGTPKLKNPEKLSPELKDFLDRCLVVD  510 (550)
T ss_pred             CCCccchhhhhhcccCccccchhhhhHHHHHhc-CCCCccCCChHHHHHHHhhcCCCCcCCccccCHHHHHHHHHHhhcc
Confidence            478999999999999999999999999999999 9999999999999999976654432  2    34667888889999


Q ss_pred             cccCCChhhhhh
Q psy8478          75 ENKAPSAVSKKR   86 (88)
Q Consensus        75 ~~~rp~~~~~~~   86 (88)
                      +.+|++|.++++
T Consensus       511 v~~RasA~eLL~  522 (550)
T KOG0578|consen  511 VEQRASAKELLE  522 (550)
T ss_pred             hhcCCCHHHHhc
Confidence            999999999875

>KOG0588|consensus

Probab=99.80  E-value=2.9e-19  Score=102.29  Aligned_cols=85  Identities=21%  Similarity=0.403  Sum_probs=74.9

Q ss_pred             CCcccCcchhccCCCC-chhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC-CC--CCCCCChHHHHHHHhhCcc
Q psy8478           1 MTRWMAPECLVDGLFS-SQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG-RL--NRPANCSHLIRSRNRLTEN   76 (88)
Q Consensus         1 ~~~~~~pe~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~--~~~~~~~~~~~~~l~~~~~   76 (88)
                      ++.|.|||++.+.+|. .++|+|++|+++|.+++ |..||++.+...++.++..|. ..  ..+.+++++++.++.+||.
T Consensus       174 SPHYA~PEIV~G~pYdG~~sDVWSCGVILfALLt-G~LPFdDdNir~LLlKV~~G~f~MPs~Is~eaQdLLr~ml~VDp~  252 (786)
T KOG0588|consen  174 SPHYAAPEIVSGRPYDGRPSDVWSCGVILFALLT-GKLPFDDDNIRVLLLKVQRGVFEMPSNISSEAQDLLRRMLDVDPS  252 (786)
T ss_pred             CcccCCchhhcCCCCCCCccccchhHHHHHHHHh-CCCCCCCccHHHHHHHHHcCcccCCCcCCHHHHHHHHHHhccCcc
Confidence            4789999999999885 58999999999999999 999999989888899998773 22  3466788999999999999


Q ss_pred             cCCChhhhhh
Q psy8478          77 KAPSAVSKKR   86 (88)
Q Consensus        77 ~rp~~~~~~~   86 (88)
                      +|.|.++|++
T Consensus       253 ~RiT~~eI~k  262 (786)
T KOG0588|consen  253 TRITTEEILK  262 (786)
T ss_pred             ccccHHHHhh
Confidence            9999999976

>KOG0201|consensus

Probab=99.79  E-value=5e-20  Score=101.02  Aligned_cols=85  Identities=19%  Similarity=0.373  Sum_probs=71.7

Q ss_pred             CCcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCC----ChHHHHHHHhhCcc
Q psy8478           1 MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN----CSHLIRSRNRLTEN   76 (88)
Q Consensus         1 ~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~l~~~~~   76 (88)
                      ++.|||||+++...|+.++|+|++|++.+++.. |.+|+....+.+.+..|-...++.....    +.+++..||..+|+
T Consensus       174 TPfwMAPEVI~~~~Y~~KADIWSLGITaiEla~-GePP~s~~hPmrvlflIpk~~PP~L~~~~S~~~kEFV~~CL~k~P~  252 (467)
T KOG0201|consen  174 TPFWMAPEVIKQSGYDTKADIWSLGITAIELAK-GEPPHSKLHPMRVLFLIPKSAPPRLDGDFSPPFKEFVEACLDKNPE  252 (467)
T ss_pred             cccccchhhhccccccchhhhhhhhHHHHHHhc-CCCCCcccCcceEEEeccCCCCCccccccCHHHHHHHHHHhhcCcc
Confidence            478999999998899999999999999999999 9999998888877777766655544333    55677889999999


Q ss_pred             cCCChhhhhh
Q psy8478          77 KAPSAVSKKR   86 (88)
Q Consensus        77 ~rp~~~~~~~   86 (88)
                      .||+|.++++
T Consensus       253 ~RpsA~~LLK  262 (467)
T KOG0201|consen  253 FRPSAKELLK  262 (467)
T ss_pred             cCcCHHHHhh
Confidence            9999999865

>KOG1095|consensus

Probab=99.79  E-value=4.9e-19  Score=105.44  Aligned_cols=85  Identities=47%  Similarity=0.882  Sum_probs=73.9

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCChHHHHHHHhhC----ccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPANCSHLIRSRNRLT----ENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~----~~~   77 (88)
                      ++||+||.+....|+.+.|+|+||+++||+++.|..||.+.+..++...+.++.+.+.|..|++.+++++..|    |++
T Consensus       868 vkWm~PEsl~d~iFtskSDvWsFGVllWEifslG~~PY~~~~n~~v~~~~~~ggRL~~P~~CP~~ly~lM~~CW~~~pe~  947 (1025)
T KOG1095|consen  868 VKWMPPESLKDGIFTSKSDVWSFGVLLWEIFSLGATPYPSRSNFEVLLDVLEGGRLDPPSYCPEKLYQLMLQCWKHDPED  947 (1025)
T ss_pred             eecCCHHHHhhcccccccchhhhHHHHHHHHhCCCCCCCCcchHHHHHHHHhCCccCCCCCCChHHHHHHHHHccCChhh
Confidence            5899999999999999999999999999999999999999999999887777779999999998777766555    577


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||+...+.+
T Consensus       948 RP~F~~i~~  956 (1025)
T KOG1095|consen  948 RPSFRTIVE  956 (1025)
T ss_pred             CccHHHHHh
Confidence            787776653

>KOG0575|consensus

Probab=99.79  E-value=4.3e-19  Score=100.26  Aligned_cols=85  Identities=21%  Similarity=0.415  Sum_probs=73.3

Q ss_pred             CCcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC-CCC--CCCCChHHHHHHHhhCccc
Q psy8478           1 MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG-RLN--RPANCSHLIRSRNRLTENK   77 (88)
Q Consensus         1 ~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~--~~~~~~~~~~~~l~~~~~~   77 (88)
                      +|.|.|||++....++..+|+||+||++|.++. |.+||......+...+|..+. ..|  ....+.++|.++|..+|.+
T Consensus       181 TPNYIAPEVl~k~gHsfEvDiWSlGcvmYtLL~-G~PPFetk~vkety~~Ik~~~Y~~P~~ls~~A~dLI~~lL~~~P~~  259 (592)
T KOG0575|consen  181 TPNYIAPEVLNKSGHSFEVDIWSLGCVMYTLLV-GRPPFETKTVKETYNKIKLNEYSMPSHLSAEAKDLIRKLLRPNPSE  259 (592)
T ss_pred             CCcccChhHhccCCCCCchhhhhhhhHHHhhhh-CCCCcccchHHHHHHHHHhcCcccccccCHHHHHHHHHHhcCCccc
Confidence            578999999998899999999999999999999 999999998999999997553 222  2334668999999999999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||++++++.
T Consensus       260 Rpsl~~vL~  268 (592)
T KOG0575|consen  260 RPSLDEVLD  268 (592)
T ss_pred             CCCHHHHhc
Confidence            999999864

>KOG0581|consensus

Probab=99.78  E-value=6.5e-19  Score=94.89  Aligned_cols=84  Identities=24%  Similarity=0.434  Sum_probs=71.9

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCC-----CHHHHHHHHHcCCCCCCCCC-----ChHHHHHHH
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPAR-----TNVDVLHYVRGGGRLNRPAN-----CSHLIRSRN   71 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~l   71 (88)
                      -.||+||.+.+..|+.++|+||+|..++|+.. |..|+...     ...+++..|..+.++..|..     +..++..||
T Consensus       241 ~~YMsPERi~g~~Ys~~sDIWSLGLsllE~a~-GrfP~~~~~~~~~~~~~Ll~~Iv~~ppP~lP~~~fS~ef~~FV~~CL  319 (364)
T KOG0581|consen  241 SAYMSPERISGESYSVKSDIWSLGLSLLELAI-GRFPYPPPNPPYLDIFELLCAIVDEPPPRLPEGEFSPEFRSFVSCCL  319 (364)
T ss_pred             ccccChhhhcCCcCCcccceecccHHHHHHhh-CCCCCCCcCCCCCCHHHHHHHHhcCCCCCCCcccCCHHHHHHHHHHh
Confidence            46999999999999999999999999999999 99998763     66888899998888877876     455666788


Q ss_pred             hhCcccCCChhhhhh
Q psy8478          72 RLTENKAPSAVSKKR   86 (88)
Q Consensus        72 ~~~~~~rp~~~~~~~   86 (88)
                      +++|.+||+++|+.+
T Consensus       320 ~Kdp~~R~s~~qLl~  334 (364)
T KOG0581|consen  320 RKDPSERPSAKQLLQ  334 (364)
T ss_pred             cCCcccCCCHHHHhc
Confidence            888999999998754

>KOG0591|consensus

Probab=99.78  E-value=1.6e-18  Score=91.51  Aligned_cols=80  Identities=21%  Similarity=0.433  Sum_probs=70.5

Q ss_pred             CCcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCC-----CCChHHHHHHHhhCc
Q psy8478           1 MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRP-----ANCSHLIRSRNRLTE   75 (88)
Q Consensus         1 ~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~l~~~~   75 (88)
                      +|.||+||.+++.+|+.++|+|++||++++++. -.+||.+.+..++..+|.++.-++.|     ++...++..|+.+++
T Consensus       191 TPyYMSPE~i~~~~Y~~kSDiWslGCllyEMca-L~~PF~g~n~~~L~~KI~qgd~~~~p~~~YS~~l~~li~~ci~vd~  269 (375)
T KOG0591|consen  191 TPYYMSPERIHESGYNFKSDIWSLGCLLYEMCA-LQSPFYGDNLLSLCKKIEQGDYPPLPDEHYSTDLRELINMCIAVDP  269 (375)
T ss_pred             CCcccCHHHHhcCCCCcchhHHHHHHHHHHHHh-cCCCcccccHHHHHHHHHcCCCCCCcHHHhhhHHHHHHHHHccCCc
Confidence            578999999999999999999999999999999 89999999999999999998766666     345566778888999


Q ss_pred             ccCCCh
Q psy8478          76 NKAPSA   81 (88)
Q Consensus        76 ~~rp~~   81 (88)
                      ..||+.
T Consensus       270 ~~RP~t  275 (375)
T KOG0591|consen  270 EQRPDT  275 (375)
T ss_pred             ccCCCc
Confidence            999983

>KOG1024|consensus

Probab=99.75  E-value=7.5e-18  Score=92.45  Aligned_cols=84  Identities=39%  Similarity=0.744  Sum_probs=77.0

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCChHHHH----HHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPANCSHLIR----SRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~----~~l~~~~~~   77 (88)
                      ++||++|.+....|+..+|+|+||+++|++++.|+.|+...++.+....+..|++...|-+|++++.    .|+...|+.
T Consensus       462 vkWMslEal~n~~yssasDvWsfGVllWELmtlg~~PyaeIDPfEm~~ylkdGyRlaQP~NCPDeLf~vMacCWallpee  541 (563)
T KOG1024|consen  462 VKWMSLEALQNSHYSSASDVWSFGVLLWELMTLGKLPYAEIDPFEMEHYLKDGYRLAQPFNCPDELFTVMACCWALLPEE  541 (563)
T ss_pred             ccccCHHHHhhhhhcchhhhHHHHHHHHHHHhcCCCCccccCHHHHHHHHhccceecCCCCCcHHHHHHHHHHHhcCccc
Confidence            5799999999999999999999999999999999999999999999999999999999999998776    467788999


Q ss_pred             CCChhhhh
Q psy8478          78 APSAVSKK   85 (88)
Q Consensus        78 rp~~~~~~   85 (88)
                      ||+.+|+.
T Consensus       542 RPsf~Qlv  549 (563)
T KOG1024|consen  542 RPSFSQLV  549 (563)
T ss_pred             CCCHHHHH
Confidence            99999875

>KOG0196|consensus

Probab=99.75  E-value=3.5e-19  Score=103.56  Aligned_cols=85  Identities=34%  Similarity=0.657  Sum_probs=77.6

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCChHHHHHHHhhCc----cc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPANCSHLIRSRNRLTE----NK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~----~~   77 (88)
                      ++|.|||.+...+|...+|+||+|+++|+++++|..||......+.+..|.++++.+.|.+|+..+++++..||    +.
T Consensus       798 iRWTAPEAIa~RKFTsASDVWSyGIVmWEVmSyGERPYWdmSNQdVIkaIe~gyRLPpPmDCP~aL~qLMldCWqkdR~~  877 (996)
T KOG0196|consen  798 IRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQDVIKAIEQGYRLPPPMDCPAALYQLMLDCWQKDRNR  877 (996)
T ss_pred             eeecChhHhhhcccCchhhccccceEEEEecccCCCcccccchHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHhhc
Confidence            68999999999999999999999999999999999999999999999999999999999999998888766665    67


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||+..|+.-
T Consensus       878 RP~F~qiV~  886 (996)
T KOG0196|consen  878 RPKFAQIVS  886 (996)
T ss_pred             CCCHHHHHH
Confidence            888888753

>KOG0200|consensus

Probab=99.73  E-value=4e-17  Score=94.66  Aligned_cols=85  Identities=39%  Similarity=0.851  Sum_probs=72.5

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCC-HHHHHHHHHcCCCCCCCCCChHHHHHHHhh----Ccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPART-NVDVLHYVRGGGRLNRPANCSHLIRSRNRL----TEN   76 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~----~~~   76 (88)
                      ++|||||.+....|+.++|+||+|+++|++++.|..||.+.. ..++...+..|++...|..|++.++.++..    +|+
T Consensus       485 ~kWmApEsl~~~~ft~kSDVWSfGI~L~EifsLG~~PYp~~~~~~~l~~~l~~G~r~~~P~~c~~eiY~iM~~CW~~~p~  564 (609)
T KOG0200|consen  485 VKWMAPESLFDRVFTSKSDVWSFGILLWEIFTLGGTPYPGIPPTEELLEFLKEGNRMEQPEHCSDEIYDLMKSCWNADPE  564 (609)
T ss_pred             eeecCHHHhccCcccccchhhHHHHHHHHHhhCCCCCCCCCCcHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHhCCCcc
Confidence            479999999999999999999999999999999999998865 677778899999999999999988665555    567


Q ss_pred             cCCChhhhhh
Q psy8478          77 KAPSAVSKKR   86 (88)
Q Consensus        77 ~rp~~~~~~~   86 (88)
                      +||+..++.+
T Consensus       565 ~RP~F~~~~~  574 (609)
T KOG0200|consen  565 DRPTFSECVE  574 (609)
T ss_pred             cCCCHHHHHH
Confidence            7888776643

>KOG0033|consensus

Probab=99.71  E-value=5e-17  Score=84.83  Aligned_cols=85  Identities=21%  Similarity=0.416  Sum_probs=72.8

Q ss_pred             CCcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC-CCC------CCCCChHHHHHHHhh
Q psy8478           1 MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG-RLN------RPANCSHLIRSRNRL   73 (88)
Q Consensus         1 ~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~------~~~~~~~~~~~~l~~   73 (88)
                      +|+||+||+++...|+.++|+|+.|++++-++. |.+||.+.+..++.+.|..+. ..+      ..+.+.++++.+|..
T Consensus       175 tP~fmaPEvvrkdpy~kpvDiW~cGViLfiLL~-G~~PF~~~~~~rlye~I~~g~yd~~~~~w~~is~~Ak~LvrrML~~  253 (355)
T KOG0033|consen  175 TPGYLSPEVLKKDPYSKPVDIWACGVILYILLV-GYPPFWDEDQHRLYEQIKAGAYDYPSPEWDTVTPEAKSLIRRMLTV  253 (355)
T ss_pred             CCcccCHHHhhcCCCCCcchhhhhhHHHHHHHh-CCCCCCCccHHHHHHHHhccccCCCCcccCcCCHHHHHHHHHHhcc
Confidence            478999999999999999999999999999999 999999989999999987653 221      234567899999999


Q ss_pred             CcccCCChhhhhh
Q psy8478          74 TENKAPSAVSKKR   86 (88)
Q Consensus        74 ~~~~rp~~~~~~~   86 (88)
                      +|.+|.|+.+.++
T Consensus       254 dP~kRIta~EAL~  266 (355)
T KOG0033|consen  254 NPKKRITADEALK  266 (355)
T ss_pred             ChhhhccHHHHhC
Confidence            9999999988653

>KOG0694|consensus

Probab=99.71  E-value=4e-17  Score=93.60  Aligned_cols=80  Identities=24%  Similarity=0.505  Sum_probs=68.4

Q ss_pred             CCcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC-CC--CCCCCChHHHHHHHhhCccc
Q psy8478           1 MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG-RL--NRPANCSHLIRSRNRLTENK   77 (88)
Q Consensus         1 ~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~--~~~~~~~~~~~~~l~~~~~~   77 (88)
                      ++.|+|||++.+..|+..+|+|++|+++|+++. |+.||.+.+..++...|.... .+  -.+.+..+.++.++.++|++
T Consensus       531 Tpey~aPEil~e~~Yt~aVDWW~lGVLlyeML~-Gq~PF~gddEee~FdsI~~d~~~yP~~ls~ea~~il~~ll~k~p~k  609 (694)
T KOG0694|consen  531 TPEFLAPEVLTEQSYTRAVDWWGLGVLLYEMLV-GESPFPGDDEEEVFDSIVNDEVRYPRFLSKEAIAIMRRLLRKNPEK  609 (694)
T ss_pred             ChhhcChhhhccCcccchhhHHHHHHHHHHHHc-CCCCCCCCCHHHHHHHHhcCCCCCCCcccHHHHHHHHHHhccCccc
Confidence            478999999999999999999999999999999 999999999999999997553 11  23445567888899999999


Q ss_pred             CCCh
Q psy8478          78 APSA   81 (88)
Q Consensus        78 rp~~   81 (88)
                      |..+
T Consensus       610 RLG~  613 (694)
T KOG0694|consen  610 RLGS  613 (694)
T ss_pred             ccCC
Confidence            9876

>KOG0582|consensus

Probab=99.71  E-value=7.5e-17  Score=89.24  Aligned_cols=85  Identities=22%  Similarity=0.402  Sum_probs=68.8

Q ss_pred             CCcccCcchhcc--CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCC-------------CCCChH
Q psy8478           1 MTRWMAPECLVD--GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNR-------------PANCSH   65 (88)
Q Consensus         1 ~~~~~~pe~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------------~~~~~~   65 (88)
                      ++.||+||++..  ..|+.++|||++|+...++.+ |..||....+.+.+-.-.++.++..             ...+..
T Consensus       193 tp~wmAPEvl~q~~~GYdfKaDIwSfGITA~ELA~-G~aPf~k~pPmkvLl~tLqn~pp~~~t~~~~~d~~k~~~ksf~e  271 (516)
T KOG0582|consen  193 TPCWMAPEVLMQQLHGYDFKADIWSFGITACELAH-GHAPFSKYPPMKVLLLTLQNDPPTLLTSGLDKDEDKKFSKSFRE  271 (516)
T ss_pred             cccccChHHhhhcccCccchhhhhhhhHHHHHHhc-CCCCcccCChHHHHHHHhcCCCCCcccccCChHHhhhhcHHHHH
Confidence            478999999654  379999999999999999999 9999998888887776666654411             123556


Q ss_pred             HHHHHHhhCcccCCChhhhhh
Q psy8478          66 LIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        66 ~~~~~l~~~~~~rp~~~~~~~   86 (88)
                      ++..||..+|.+||||.++++
T Consensus       272 ~i~~CL~kDP~kRptAskLlk  292 (516)
T KOG0582|consen  272 MIALCLVKDPSKRPTASKLLK  292 (516)
T ss_pred             HHHHHhhcCcccCCCHHHHhc
Confidence            788899999999999998865

>PHA02988 hypothetical protein; Provisional

Probab=99.70  E-value=9.8e-17  Score=85.76  Aligned_cols=85  Identities=19%  Similarity=0.400  Sum_probs=67.1

Q ss_pred             CcccCcchhcc--CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHc-CCCCCCC----CCChHHHHHHHhhC
Q psy8478           2 TRWMAPECLVD--GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRG-GGRLNRP----ANCSHLIRSRNRLT   74 (88)
Q Consensus         2 ~~~~~pe~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~----~~~~~~~~~~l~~~   74 (88)
                      +.|++||.+.+  ..++.++|+||+|++++++++ |..||.+....+....+.. +.+++.+    ..+.+++.+|+..+
T Consensus       184 ~~y~aPE~~~~~~~~~~~k~Di~SlGvil~el~~-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~li~~cl~~d  262 (283)
T PHA02988        184 MVYFSYKMLNDIFSEYTIKDDIYSLGVVLWEIFT-GKIPFENLTTKEIYDLIINKNNSLKLPLDCPLEIKCIVEACTSHD  262 (283)
T ss_pred             ccccCHHHhhhccccccchhhhhHHHHHHHHHHH-CCCCCCCCCHHHHHHHHHhcCCCCCCCCcCcHHHHHHHHHHhcCC
Confidence            46899999875  578889999999999999999 9999988777777666643 3333333    34567777888889


Q ss_pred             cccCCChhhhhhc
Q psy8478          75 ENKAPSAVSKKRI   87 (88)
Q Consensus        75 ~~~rp~~~~~~~~   87 (88)
                      |++||++.++.+.
T Consensus       263 p~~Rps~~ell~~  275 (283)
T PHA02988        263 SIKRPNIKEILYN  275 (283)
T ss_pred             cccCcCHHHHHHH
Confidence            9999999998753

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=99.70  E-value=1.3e-16  Score=80.06  Aligned_cols=84  Identities=18%  Similarity=0.360  Sum_probs=61.7

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCH-HHHHHHHHcCCCCC------C----CC--CChHHHH
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTN-VDVLHYVRGGGRLN------R----PA--NCSHLIR   68 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~------~----~~--~~~~~~~   68 (88)
                      +.|++||.+.+..++.++|+|++|++++++++ |..||..... ......+.......      .    ..  .+.+++.
T Consensus        68 ~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  146 (176)
T smart00750       68 PYFMAPEVIQGQSYTEKADIYSLGITLYEALD-YELPYNEERELSAILEILLNGMPADDPRDRSNLESVSAARSFADFMR  146 (176)
T ss_pred             ccccChHHhcCCCCcchhhHHHHHHHHHHHHh-CCCCccccchhcHHHHHHHHHhccCCccccccHHHHHhhhhHHHHHH
Confidence            57999999988889999999999999999999 9889865432 22222222111111      0    11  4677888


Q ss_pred             HHHhhCcccCCChhhhhh
Q psy8478          69 SRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        69 ~~l~~~~~~rp~~~~~~~   86 (88)
                      .|+..+|.+||++.++.+
T Consensus       147 ~cl~~~p~~Rp~~~~ll~  164 (176)
T smart00750      147 VCASRLPQRREAANHYLA  164 (176)
T ss_pred             HHHhcccccccCHHHHHH
Confidence            999999999999999865

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>KOG4278|consensus

Probab=99.70  E-value=1.8e-16  Score=91.64  Aligned_cols=84  Identities=37%  Similarity=0.681  Sum_probs=74.4

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCChHHHHH----HHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPANCSHLIRS----RNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~----~l~~~~~~   77 (88)
                      ++|.+||.+.++.|+.+.|+|.||+++|++.++|-.||.+.+..++...+..+++...|++|+.-++.    |+...|..
T Consensus       430 IKWTAPEsLAyNtFSiKSDVWAFGVLLWEIATYGMsPYPGidlSqVY~LLEkgyRM~~PeGCPpkVYeLMraCW~WsPsD  509 (1157)
T KOG4278|consen  430 IKWTAPESLAYNTFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYGLLEKGYRMDGPEGCPPKVYELMRACWNWSPSD  509 (1157)
T ss_pred             ccccCcccccccccccchhhHHHHHHHHHHHhcCCCCCCCccHHHHHHHHhccccccCCCCCCHHHHHHHHHHhcCCccc
Confidence            68999999999999999999999999999999999999999999999999999999999999876555    55555688


Q ss_pred             CCChhhhh
Q psy8478          78 APSAVSKK   85 (88)
Q Consensus        78 rp~~~~~~   85 (88)
                      ||+..++-
T Consensus       510 RPsFaeiH  517 (1157)
T KOG4278|consen  510 RPSFAEIH  517 (1157)
T ss_pred             CccHHHHH
Confidence            88877763

>KOG0610|consensus

Probab=99.69  E-value=8.3e-17  Score=88.28  Aligned_cols=84  Identities=26%  Similarity=0.469  Sum_probs=69.9

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC-CCC----CCCCChHHHHHHHhhCcc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG-RLN----RPANCSHLIRSRNRLTEN   76 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~----~~~~~~~~~~~~l~~~~~   76 (88)
                      .-|+|||++.+..++..+|+|.+|+++||+++ |..||-+.+..+.+..|.... ..+    ....+.++|+.+|.++|+
T Consensus       299 hEYlAPEvI~G~GHgsAVDWWtfGIflYEmLy-G~TPFKG~~~~~Tl~NIv~~~l~Fp~~~~vs~~akDLIr~LLvKdP~  377 (459)
T KOG0610|consen  299 HEYLAPEVIRGEGHGSAVDWWTFGIFLYEMLY-GTTPFKGSNNKETLRNIVGQPLKFPEEPEVSSAAKDLIRKLLVKDPS  377 (459)
T ss_pred             cccccceeeecCCCCchhhHHHHHHHHHHHHh-CCCCcCCCCchhhHHHHhcCCCcCCCCCcchhHHHHHHHHHhccChh
Confidence            35899999999999999999999999999999 999999998888888876442 111    124578999999999999


Q ss_pred             cCCC----hhhhhh
Q psy8478          77 KAPS----AVSKKR   86 (88)
Q Consensus        77 ~rp~----~~~~~~   86 (88)
                      +|..    |.+|.+
T Consensus       378 kRlg~~rGA~eIK~  391 (459)
T KOG0610|consen  378 KRLGSKRGAAEIKR  391 (459)
T ss_pred             hhhccccchHHhhc
Confidence            9998    666643

>KOG0598|consensus

Probab=99.68  E-value=2.8e-16  Score=84.85  Aligned_cols=78  Identities=21%  Similarity=0.413  Sum_probs=67.7

Q ss_pred             CCcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCC----CCCChHHHHHHHhhCcc
Q psy8478           1 MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNR----PANCSHLIRSRNRLTEN   76 (88)
Q Consensus         1 ~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~l~~~~~   76 (88)
                      ++-|||||++....|+..+|+|++|+++|++++ |.+||.+.+..+....|..+.....    ...+.+++..+|.++|.
T Consensus       188 T~eYmAPEil~~~gy~~~vDWWsLGillYeML~-G~pPF~~~~~~~~~~~I~~~k~~~~p~~ls~~ardll~~LL~rdp~  266 (357)
T KOG0598|consen  188 TPEYMAPEILLGKGYDKAVDWWSLGILLYEMLT-GKPPFYAEDVKKMYDKILKGKLPLPPGYLSEEARDLLKKLLKRDPR  266 (357)
T ss_pred             CccccChHHHhcCCCCcccchHhHHHHHHHHhh-CCCCCcCccHHHHHHHHhcCcCCCCCccCCHHHHHHHHHHhccCHH
Confidence            467999999999999999999999999999999 9999999999999999987753332    34567788889999999


Q ss_pred             cCC
Q psy8478          77 KAP   79 (88)
Q Consensus        77 ~rp   79 (88)
                      +|.
T Consensus       267 ~RL  269 (357)
T KOG0598|consen  267 QRL  269 (357)
T ss_pred             Hhc
Confidence            996

>KOG0199|consensus

Probab=99.67  E-value=2.2e-16  Score=91.80  Aligned_cols=84  Identities=32%  Similarity=0.644  Sum_probs=76.8

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCChHHHHHHHhhCc----cc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPANCSHLIRSRNRLTE----NK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~----~~   77 (88)
                      ..|++||.++..+|+.++|+|.+|+.+||++++|+-|+.+....++++.|..+.+.+.|+.|++.|++++..||    ..
T Consensus       279 fAWCaPEsLrh~kFShaSDvWmyGVTiWEMFtyGEePW~G~~g~qIL~~iD~~erLpRPk~csedIY~imk~cWah~paD  358 (1039)
T KOG0199|consen  279 FAWCAPESLRHRKFSHASDVWMYGVTIWEMFTYGEEPWVGCRGIQILKNIDAGERLPRPKYCSEDIYQIMKNCWAHNPAD  358 (1039)
T ss_pred             ccccCHhHhccccccccchhhhhhhhHHhhhccCCCCCCCCCHHHHHHhccccccCCCCCCChHHHHHHHHHhccCCccc
Confidence            36999999999999999999999999999999999999999999999999988899999999999999888875    67


Q ss_pred             CCChhhhh
Q psy8478          78 APSAVSKK   85 (88)
Q Consensus        78 rp~~~~~~   85 (88)
                      ||+...+.
T Consensus       359 RptFsair  366 (1039)
T KOG0199|consen  359 RPTFSAIR  366 (1039)
T ss_pred             cccHHHHH
Confidence            88877764

>KOG0192|consensus

Probab=99.67  E-value=9.1e-16  Score=84.39  Aligned_cols=84  Identities=32%  Similarity=0.624  Sum_probs=66.1

Q ss_pred             CcccCcchhc--cCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHH-cCCCCCCCCCChHHHH----HHHhhC
Q psy8478           2 TRWMAPECLV--DGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVR-GGGRLNRPANCSHLIR----SRNRLT   74 (88)
Q Consensus         2 ~~~~~pe~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~----~~l~~~   74 (88)
                      ..|||||.+.  ...|+.++|+||||+++|++++ +..||......+....+. .+.++..|..++..+.    .|+..+
T Consensus       208 ~~wMAPEv~~~~~~~~~~K~DvySFgIvlWEl~t-~~~Pf~~~~~~~~~~~v~~~~~Rp~~p~~~~~~l~~l~~~CW~~d  286 (362)
T KOG0192|consen  208 YRWMAPEVLRGEKSPYTEKSDVYSFGIVLWELLT-GEIPFEDLAPVQVASAVVVGGLRPPIPKECPPHLSSLMERCWLVD  286 (362)
T ss_pred             ccccChhhhcCCCCcCCccchhhhHHHHHHHHHH-CCCCCCCCCHHHHHHHHHhcCCCCCCCccCCHHHHHHHHHhCCCC
Confidence            4699999999  5689999999999999999999 999999888777666664 5666666665655444    555666


Q ss_pred             cccCCChhhhhh
Q psy8478          75 ENKAPSAVSKKR   86 (88)
Q Consensus        75 ~~~rp~~~~~~~   86 (88)
                      |.+||+..++..
T Consensus       287 p~~RP~f~ei~~  298 (362)
T KOG0192|consen  287 PSRRPSFLEIVS  298 (362)
T ss_pred             CCcCCCHHHHHH
Confidence            788888877754

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=99.66  E-value=1e-15  Score=81.07  Aligned_cols=86  Identities=37%  Similarity=0.683  Sum_probs=68.6

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCC----hHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPANC----SHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~----~~~~~~~l~~~~~~   77 (88)
                      ..|++||.+....++.++|+|++|+++++++..|..||......+....+..+...+.+..+    .+++.+|+..+|.+
T Consensus       172 ~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~c~~~~p~~  251 (266)
T cd05064         172 VLWAAPEAIQYHHFSSASDVWSFGIVMWEVMSYGERPYWDMSGQDVIKAVEDGFRLPAPRNCPNLLHQLMLDCWQKERGE  251 (266)
T ss_pred             eeecCHHHHhhCCccchhHHHHHHHHHHHHhcCCCCCcCcCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHcCCCchh
Confidence            35899999888888899999999999999775589999888777777777666554445444    45666788888999


Q ss_pred             CCChhhhhhc
Q psy8478          78 APSAVSKKRI   87 (88)
Q Consensus        78 rp~~~~~~~~   87 (88)
                      ||+++++.++
T Consensus       252 RP~~~~i~~~  261 (266)
T cd05064         252 RPRFSQIHSI  261 (266)
T ss_pred             CCCHHHHHHH
Confidence            9999998764

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>KOG0616|consensus

Probab=99.66  E-value=3.8e-16  Score=82.94  Aligned_cols=77  Identities=19%  Similarity=0.436  Sum_probs=66.1

Q ss_pred             CCcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCC---CCCCCCChHHHHHHHhhCccc
Q psy8478           1 MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGR---LNRPANCSHLIRSRNRLTENK   77 (88)
Q Consensus         1 ~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~l~~~~~~   77 (88)
                      ++-|+|||++....|+..+|+|++|++.|+++. |.+||.+.++..+.++|.++.-   .-....+.+++.++|+++..+
T Consensus       204 TPeYLAPEii~sk~ynkavDWWalGVLIYEMla-G~pPF~~~~~~~iY~KI~~~~v~fP~~fs~~~kdLl~~LL~vD~t~  282 (355)
T KOG0616|consen  204 TPEYLAPEIIQSKGYNKAVDWWALGVLIYEMLA-GYPPFYDDNPIQIYEKILEGKVKFPSYFSSDAKDLLKKLLQVDLTK  282 (355)
T ss_pred             CccccChHHhhcCCCCcchhHHHHHHHHHHHHc-CCCCCcCCChHHHHHHHHhCcccCCcccCHHHHHHHHHHHhhhhHh
Confidence            467999999999999999999999999999999 9999999999999999987742   122345677888899999888


Q ss_pred             C
Q psy8478          78 A   78 (88)
Q Consensus        78 r   78 (88)
                      |
T Consensus       283 R  283 (355)
T KOG0616|consen  283 R  283 (355)
T ss_pred             h
Confidence            8

>KOG4257|consensus

Probab=99.66  E-value=9.1e-17  Score=92.48  Aligned_cols=85  Identities=39%  Similarity=0.702  Sum_probs=75.9

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCChHHHHHHHhhC----ccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPANCSHLIRSRNRLT----ENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~----~~~   77 (88)
                      ++||+||.++...|+..+|+|-||+.+|+++..|-.||.+....+.+..|.+|.+++.|+.|+..++.++.+|    |.+
T Consensus       556 IKWmaPESINfRrFTtASDVWMFgVCmWEIl~lGvkPfqgvkNsDVI~~iEnGeRlP~P~nCPp~LYslmskcWayeP~k  635 (974)
T KOG4257|consen  556 IKWMAPESINFRRFTTASDVWMFGVCMWEILSLGVKPFQGVKNSDVIGHIENGERLPCPPNCPPALYSLMSKCWAYEPSK  635 (974)
T ss_pred             eeecCccccchhcccchhhHHHHHHHHHHHHHhcCCccccccccceEEEecCCCCCCCCCCCChHHHHHHHHHhccCccc
Confidence            6899999999889999999999999999999989999999999999999999999999999999888776666    577


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||...++..
T Consensus       636 RPrftei~~  644 (974)
T KOG4257|consen  636 RPRFTEIKA  644 (974)
T ss_pred             CCcHHHHHH
Confidence            887777654

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=99.65  E-value=1.4e-15  Score=80.97  Aligned_cols=85  Identities=35%  Similarity=0.652  Sum_probs=68.9

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCC----CCCChHHHHHHHhhCcccC
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNR----PANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~l~~~~~~r   78 (88)
                      .|++||.+....++.++|+|++|++++++++.|..||.+....+....+..+.....    +..+.+++..|+..+|.+|
T Consensus       191 ~y~aPE~~~~~~~~~~sDv~slG~il~el~~~g~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~c~~~~p~~R  270 (283)
T cd05048         191 RWMPPEAILYGKFTTESDIWSFGVVLWEIFSYGLQPYYGFSNQEVIEMIRSRQLLPCPEDCPARVYALMIECWNEIPARR  270 (283)
T ss_pred             cccCHHHhccCcCchhhhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCcCCCcccCCHHHHHHHHHHccCChhhC
Confidence            589999988778888999999999999998668889988887777777766544433    3455677788888999999


Q ss_pred             CChhhhhhc
Q psy8478          79 PSAVSKKRI   87 (88)
Q Consensus        79 p~~~~~~~~   87 (88)
                      |++.++.+.
T Consensus       271 p~~~~i~~~  279 (283)
T cd05048         271 PRFKDIHTR  279 (283)
T ss_pred             cCHHHHHHH
Confidence            999998753

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=99.64  E-value=1.3e-15  Score=81.43  Aligned_cols=84  Identities=20%  Similarity=0.279  Sum_probs=64.5

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC------------------------
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRL------------------------   57 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------------------------   57 (88)
                      +.|++||.+....++.++|+|++|++++++++ |..||.+....+....+......                        
T Consensus       173 ~~y~aPE~~~~~~~~~~~DiwslG~il~el~~-g~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (290)
T cd07862         173 LWYRAPEVLLQSSYATPVDLWSVGCIFAEMFR-RKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQP  251 (290)
T ss_pred             ccccChHHHhCCCCCCccchHHHHHHHHHHHc-CCCCcCCCCHHHHHHHHHHHhCCCChhhchhhhcccchhccCCCCCC
Confidence            46899999987788889999999999999998 99999877766655554321100                        


Q ss_pred             ------CCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          58 ------NRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        58 ------~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                            ..+....+++..|++.+|++||++.++++
T Consensus       252 ~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~~~l~  286 (290)
T cd07862         252 IEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALS  286 (290)
T ss_pred             HHHHccCCCHHHHHHHHHHhccCchhcCCHHHHhc
Confidence                  11223357888999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=99.64  E-value=3.3e-15  Score=79.66  Aligned_cols=86  Identities=34%  Similarity=0.610  Sum_probs=68.8

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCC----CChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA----NCSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~l~~~~~~   77 (88)
                      +.|++||.+....++.++|+|++|++++++++.|..|+.+....+....+..+...+.+.    .+.+++.+|+..+|..
T Consensus       190 ~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~li~~cl~~~p~~  269 (283)
T cd05091         190 IRWMSPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQDVIEMIRNRQVLPCPDDCPAWVYTLMLECWNEFPSR  269 (283)
T ss_pred             ccccCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHhCCCccc
Confidence            469999998877788899999999999999876888888777777777776655443333    3456777889999999


Q ss_pred             CCChhhhhhc
Q psy8478          78 APSAVSKKRI   87 (88)
Q Consensus        78 rp~~~~~~~~   87 (88)
                      ||+++++.+.
T Consensus       270 RP~~~~i~~~  279 (283)
T cd05091         270 RPRFKDIHSR  279 (283)
T ss_pred             CCCHHHHHHH
Confidence            9999998653

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>KOG0592|consensus

Probab=99.64  E-value=9.5e-16  Score=86.52  Aligned_cols=84  Identities=21%  Similarity=0.388  Sum_probs=71.6

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcC---CCCCCCCCChHHHHHHHhhCcccC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGG---GRLNRPANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~~~~~~~~~~~~~~~l~~~~~~r   78 (88)
                      -.|++||.+.+...+..+|+|++||++|+++. |.+||.+.+.--+.++|..-   .+...|..+.+++.++|..+|.+|
T Consensus       251 AeYVSPElL~~~~~~~~sDiWAlGCilyQmla-G~PPFra~NeyliFqkI~~l~y~fp~~fp~~a~dLv~KLLv~dp~~R  329 (604)
T KOG0592|consen  251 AEYVSPELLNDSPAGPSSDLWALGCILYQMLA-GQPPFRAANEYLIFQKIQALDYEFPEGFPEDARDLIKKLLVRDPSDR  329 (604)
T ss_pred             ecccCHHHhcCCCCCcccchHHHHHHHHHHhc-CCCCCccccHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHccCcccc
Confidence            36899999998888889999999999999999 99999998887788887543   233456677889999999999999


Q ss_pred             CChhhhhh
Q psy8478          79 PSAVSKKR   86 (88)
Q Consensus        79 p~~~~~~~   86 (88)
                      +++.+|.+
T Consensus       330 lt~~qIk~  337 (604)
T KOG0592|consen  330 LTSQQIKA  337 (604)
T ss_pred             ccHHHHhh
Confidence            99988754

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=99.64  E-value=3.7e-15  Score=78.56  Aligned_cols=85  Identities=34%  Similarity=0.667  Sum_probs=67.9

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCC----CChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA----NCSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~l~~~~~~   77 (88)
                      +.|++||.+....++.++|+|++|++++++++.|..||.+....+....+..+..++.|.    .+.+++..|+..+|..
T Consensus       162 ~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~~~~~~p~~  241 (257)
T cd05116         162 VKWYAPECMNYYKFSSKSDVWSFGVLMWEAFSYGQKPYKGMKGNEVTQMIESGERMECPQRCPPEMYDLMKLCWTYGVDE  241 (257)
T ss_pred             ccccCHhHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHhccCchh
Confidence            468999988777788899999999999999865888998777777777777655444444    4556777888888999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||++.+|.+
T Consensus       242 Rp~~~~i~~  250 (257)
T cd05116         242 RPGFAVVEL  250 (257)
T ss_pred             CcCHHHHHH
Confidence            999999865

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=99.64  E-value=1.4e-15  Score=80.82  Aligned_cols=86  Identities=30%  Similarity=0.630  Sum_probs=68.8

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCC----CCCChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNR----PANCSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~l~~~~~~   77 (88)
                      +.|++||.+....++.++|+|++|++++++++.|..||......+....+..+.....    +..+.+++.+|+..+|.+
T Consensus       188 ~~y~aPE~~~~~~~~~~~Di~slG~il~e~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~  267 (280)
T cd05049         188 IRWMPPESIMYRKFTTESDVWSFGVVLWEIFTYGKQPWYGLSNEEVIECITQGRLLQRPRTCPSEVYDIMLGCWKRDPQQ  267 (280)
T ss_pred             ceecChhhhccCCcchhhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcCCCccc
Confidence            3589999998888888999999999999998668889887777777777765543333    334567778888899999


Q ss_pred             CCChhhhhhc
Q psy8478          78 APSAVSKKRI   87 (88)
Q Consensus        78 rp~~~~~~~~   87 (88)
                      ||++.++++.
T Consensus       268 Rp~~~eil~~  277 (280)
T cd05049         268 RINIKDIHER  277 (280)
T ss_pred             CCCHHHHHHH
Confidence            9999999764

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>PTZ00284 protein kinase; Provisional

Probab=99.63  E-value=1e-15  Score=86.62  Aligned_cols=84  Identities=21%  Similarity=0.372  Sum_probs=63.2

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC-CC-----------------------
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG-RL-----------------------   57 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~-----------------------   57 (88)
                      +.|++||.+.+..++.++|+|++|++++++++ |..||.+.+..+....+.... ..                       
T Consensus       309 ~~Y~APE~~~~~~~~~~~DiwSlGvil~ellt-G~~pf~~~~~~~~~~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~  387 (467)
T PTZ00284        309 RHYRSPEVVLGLGWMYSTDMWSMGCIIYELYT-GKLLYDTHDNLEHLHLMEKTLGRLPSEWAGRCGTEEARLLYNSAGQL  387 (467)
T ss_pred             ccccCcHHhhcCCCCcHHHHHHHHHHHHHHHh-CCCCCCCCChHHHHHHHHHHcCCCCHHHHhhccchhHHHHhhhcccc
Confidence            46999999988889999999999999999999 999998766555444332110 00                       


Q ss_pred             --C-------------------CCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          58 --N-------------------RPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        58 --~-------------------~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                        .                   ....+.+++..||..+|.+||+++++++
T Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dP~~R~ta~e~L~  437 (467)
T PTZ00284        388 RPCTDPKHLARIARARPVREVIRDDLLCDLIYGLLHYDRQKRLNARQMTT  437 (467)
T ss_pred             cccCCHHHHHhhhcccchhhhhchHHHHHHHHHhCCcChhhCCCHHHHhc
Confidence              0                   0011347889999999999999999864

>KOG0583|consensus

Probab=99.63  E-value=3.5e-15  Score=82.43  Aligned_cols=83  Identities=20%  Similarity=0.393  Sum_probs=69.5

Q ss_pred             CCcccCcchhccCC-CC-chhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCC-----CCCChHHHHHHHhh
Q psy8478           1 MTRWMAPECLVDGL-FS-SQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNR-----PANCSHLIRSRNRL   73 (88)
Q Consensus         1 ~~~~~~pe~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~l~~   73 (88)
                      ++.|+|||.+.+.. |. .++|+||+|+++|.++. |..||...+...+...|..+. ...     ...+..++..++..
T Consensus       184 sp~Y~aPEvl~~~~~Y~g~~aDvWS~GViLy~ml~-G~~PF~d~~~~~l~~ki~~~~-~~~p~~~~S~~~~~Li~~mL~~  261 (370)
T KOG0583|consen  184 SPAYAAPEVLSGKGTYSGKAADVWSLGVILYVLLC-GRLPFDDSNVPNLYRKIRKGE-FKIPSYLLSPEARSLIEKMLVP  261 (370)
T ss_pred             CcccCCHHHhCCCCCcCCchhhhhhhHHHHHHHHh-CCCCCCCccHHHHHHHHhcCC-ccCCCCcCCHHHHHHHHHHcCC
Confidence            47899999999876 85 58999999999999999 999999888877887876552 223     44557888999999


Q ss_pred             CcccCCChhhhh
Q psy8478          74 TENKAPSAVSKK   85 (88)
Q Consensus        74 ~~~~rp~~~~~~   85 (88)
                      +|.+|+++.++.
T Consensus       262 ~P~~R~t~~~i~  273 (370)
T KOG0583|consen  262 DPSTRITLLEIL  273 (370)
T ss_pred             CcccCCCHHHHh
Confidence            999999999986

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=99.63  E-value=5.7e-15  Score=78.08  Aligned_cols=85  Identities=39%  Similarity=0.704  Sum_probs=67.8

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCC----CChHHHHHHHhhCcccC
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA----NCSHLIRSRNRLTENKA   78 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~l~~~~~~r   78 (88)
                      .|++||.+.+..++.++|+|++|++++++++.|..|+.+....+....+..+.....+.    ...+++.+|+..+|.+|
T Consensus       170 ~y~aPE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~R  249 (263)
T cd05052         170 KWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKGYRMERPEGCPPKVYELMRACWQWNPSDR  249 (263)
T ss_pred             ccCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHccCCcccC
Confidence            58999998877888899999999999999876888988777777767776554444443    45567778888899999


Q ss_pred             CChhhhhhc
Q psy8478          79 PSAVSKKRI   87 (88)
Q Consensus        79 p~~~~~~~~   87 (88)
                      |++.++.+.
T Consensus       250 p~~~~l~~~  258 (263)
T cd05052         250 PSFAEIHQA  258 (263)
T ss_pred             CCHHHHHHH
Confidence            999998763

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=99.63  E-value=9.5e-16  Score=81.05  Aligned_cols=86  Identities=35%  Similarity=0.601  Sum_probs=66.5

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCC----ChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN----CSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~l~~~~~~   77 (88)
                      ..|++||.+....++.++|+|++|++++++++.+..|+......+....+.++.+...+..    +.+.+.+|+..+|.+
T Consensus       169 ~~~~aPE~~~~~~~~~ksDVysfG~~l~ei~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~C~~~~p~~  248 (259)
T PF07714_consen  169 LRYLAPEVLKDGEYTKKSDVYSFGMLLYEILTLGKFPFSDYDNEEIIEKLKQGQRLPIPDNCPKDIYSLIQQCWSHDPEK  248 (259)
T ss_dssp             GGGS-HHHHHHSEESHHHHHHHHHHHHHHHHTTSSGTTTTSCHHHHHHHHHTTEETTSBTTSBHHHHHHHHHHT-SSGGG
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccceeccchhHHHHHHHHHHcCCChhh
Confidence            3689999998888899999999999999999866789988888888888877665555444    455666788888999


Q ss_pred             CCChhhhhhc
Q psy8478          78 APSAVSKKRI   87 (88)
Q Consensus        78 rp~~~~~~~~   87 (88)
                      ||++.++.+.
T Consensus       249 RPs~~~i~~~  258 (259)
T PF07714_consen  249 RPSFQEILQE  258 (259)
T ss_dssp             S--HHHHHHH
T ss_pred             CcCHHHHHhc
Confidence            9999999764

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>KOG0577|consensus

Probab=99.63  E-value=9.6e-16  Score=88.04  Aligned_cols=85  Identities=18%  Similarity=0.370  Sum_probs=71.6

Q ss_pred             CCcccCcchhc---cCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCC-----CChHHHHHHHh
Q psy8478           1 MTRWMAPECLV---DGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA-----NCSHLIRSRNR   72 (88)
Q Consensus         1 ~~~~~~pe~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~~~~~~~~~l~   72 (88)
                      +|.|||||++.   .+.|..++|+||+|+.+.++.. .++|+...+....+..|.++..+..+.     .+.+++..||.
T Consensus       185 TPywMAPEVILAMDEGqYdgkvDvWSLGITCIELAE-RkPPlFnMNAMSALYHIAQNesPtLqs~eWS~~F~~Fvd~CLq  263 (948)
T KOG0577|consen  185 TPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAE-RKPPLFNMNAMSALYHIAQNESPTLQSNEWSDYFRNFVDSCLQ  263 (948)
T ss_pred             CccccchhHheeccccccCCccceeeccchhhhhhh-cCCCccCchHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHh
Confidence            57899999987   3579999999999999999988 889999999999999998887665443     35567778888


Q ss_pred             hCcccCCChhhhhh
Q psy8478          73 LTENKAPSAVSKKR   86 (88)
Q Consensus        73 ~~~~~rp~~~~~~~   86 (88)
                      .-|..|||.+.+++
T Consensus       264 KipqeRptse~ll~  277 (948)
T KOG0577|consen  264 KIPQERPTSEELLK  277 (948)
T ss_pred             hCcccCCcHHHHhh
Confidence            88999999988764

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=99.63  E-value=5.1e-15  Score=84.43  Aligned_cols=84  Identities=20%  Similarity=0.390  Sum_probs=68.7

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCC----CChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA----NCSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~l~~~~~~   77 (88)
                      +.|++||.+....++.++|+|++|++++++++ |..||.+....+....+..+...+.+.    .+.+++..|+..+|.+
T Consensus       209 ~~Y~aPE~~~~~~~s~k~DVwSlGvilyeLlt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~  287 (496)
T PTZ00283        209 PYYVAPEIWRRKPYSKKADMFSLGVLLYELLT-LKRPFDGENMEEVMHKTLAGRYDPLPPSISPEMQEIVTALLSSDPKR  287 (496)
T ss_pred             cceeCHHHhCCCCCCcHHHHHHHHHHHHHHHH-CCCCCCCCCHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcccChhh
Confidence            46999999988888999999999999999999 999998888777777776554433333    4566777888899999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||++.++++
T Consensus       288 RPs~~ell~  296 (496)
T PTZ00283        288 RPSSSKLLN  296 (496)
T ss_pred             CcCHHHHHh
Confidence            999998754

>KOG0579|consensus

Probab=99.62  E-value=1.6e-15  Score=87.95  Aligned_cols=85  Identities=20%  Similarity=0.364  Sum_probs=70.8

Q ss_pred             CCcccCcchhc-----cCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCC------CCCCChHHHHH
Q psy8478           1 MTRWMAPECLV-----DGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLN------RPANCSHLIRS   69 (88)
Q Consensus         1 ~~~~~~pe~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~   69 (88)
                      +++|||||++.     +..|.-++|+|++|+.+.++.- +.+|.+..++.+++-.|....++.      +..++.+++..
T Consensus       193 TPYWMAPEVvmCET~KD~PYDykaDiWSlGITLIEMAq-iEPPHhelnpMRVllKiaKSePPTLlqPS~Ws~~F~DfLk~  271 (1187)
T KOG0579|consen  193 TPYWMAPEVVMCETFKDQPYDYKADIWSLGITLIEMAQ-IEPPHHELNPMRVLLKIAKSEPPTLLQPSHWSRSFSDFLKR  271 (1187)
T ss_pred             CcccccchheeeccccCCCchhhhhHHhhhhHHHHHhc-cCCCccccchHHHHHHHhhcCCCcccCcchhhhHHHHHHHH
Confidence            47899999876     3568889999999999999998 999999899999998887665442      23356778888


Q ss_pred             HHhhCcccCCChhhhhh
Q psy8478          70 RNRLTENKAPSAVSKKR   86 (88)
Q Consensus        70 ~l~~~~~~rp~~~~~~~   86 (88)
                      ||..+|..||++.++++
T Consensus       272 cL~Knp~~Rp~aaqll~  288 (1187)
T KOG0579|consen  272 CLVKNPRNRPPAAQLLK  288 (1187)
T ss_pred             HHhcCCccCCCHHHHhh
Confidence            99999999999999875

>KOG0597|consensus

Probab=99.62  E-value=1.1e-15  Score=87.20  Aligned_cols=85  Identities=18%  Similarity=0.319  Sum_probs=70.0

Q ss_pred             CCcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCC---CCCChHHHHHHHhhCccc
Q psy8478           1 MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNR---PANCSHLIRSRNRLTENK   77 (88)
Q Consensus         1 ~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~l~~~~~~   77 (88)
                      ++.||+||.+.+..|+..+|.|++||++|++.. |++||.+....++...|......+.   ...+.+++..+|.++|.+
T Consensus       163 tPlYmAPElv~e~pyd~~sDlWslGcilYE~~~-G~PPF~a~si~~Lv~~I~~d~v~~p~~~S~~f~nfl~gLL~kdP~~  241 (808)
T KOG0597|consen  163 TPLYMAPELVEEQPYDHTSDLWSLGCILYELYV-GQPPFYARSITQLVKSILKDPVKPPSTASSSFVNFLQGLLIKDPAQ  241 (808)
T ss_pred             cccccCHHHHcCCCccchhhHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHhcCCCCCcccccHHHHHHHHHHhhcChhh
Confidence            478999999999999999999999999999999 9999998887777878865532221   234667888899999999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      |.++.++.+
T Consensus       242 RltW~~Ll~  250 (808)
T KOG0597|consen  242 RLTWTDLLG  250 (808)
T ss_pred             cccHHHHhc
Confidence            999887653

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=99.62  E-value=5.8e-15  Score=79.10  Aligned_cols=85  Identities=32%  Similarity=0.660  Sum_probs=67.8

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCC----CCCChHHHHHHHhhCcccC
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNR----PANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~l~~~~~~r   78 (88)
                      .|++||.+.+..++.++|+|++|++++++++.|..||......+....+..+.....    +..+.+++.+|+..+|++|
T Consensus       190 ~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R  269 (291)
T cd05094         190 RWMPPESIMYRKFTTESDVWSFGVILWEIFTYGKQPWFQLSNTEVIECITQGRVLERPRVCPKEVYDIMLGCWQREPQQR  269 (291)
T ss_pred             eecChHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhCCCCCCCCccCCHHHHHHHHHHcccChhhC
Confidence            589999988888888999999999999988768889877777667666665544333    3345667888999999999


Q ss_pred             CChhhhhhc
Q psy8478          79 PSAVSKKRI   87 (88)
Q Consensus        79 p~~~~~~~~   87 (88)
                      |++.++.+.
T Consensus       270 pt~~~v~~~  278 (291)
T cd05094         270 LNIKEIYKI  278 (291)
T ss_pred             cCHHHHHHH
Confidence            999998763

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>KOG4721|consensus

Probab=99.62  E-value=2.4e-16  Score=90.07  Aligned_cols=85  Identities=28%  Similarity=0.575  Sum_probs=63.7

Q ss_pred             CCcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHH-cCCCCCCCCCChH----HHHHHHhhCc
Q psy8478           1 MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVR-GGGRLNRPANCSH----LIRSRNRLTE   75 (88)
Q Consensus         1 ~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~----~~~~~l~~~~   75 (88)
                      ++.|||||+++....+.++|||+||+++|++++ +..||...+...++--+- .....+.|..|++    ++++|+...|
T Consensus       274 TVaWMAPEvIrnePcsEKVDIwSfGVVLWEmLT-~EiPYkdVdssAIIwGVGsNsL~LpvPstcP~GfklL~Kqcw~sKp  352 (904)
T KOG4721|consen  274 TVAWMAPEVIRNEPCSEKVDIWSFGVVLWEMLT-GEIPYKDVDSSAIIWGVGSNSLHLPVPSTCPDGFKLLLKQCWNSKP  352 (904)
T ss_pred             hHhhhCHHHhhcCCcccccceehhHHHHHHHHh-cCCCccccchheeEEeccCCcccccCcccCchHHHHHHHHHHhcCC
Confidence            357999999999999999999999999999999 999998766544433221 1123445555554    5666777778


Q ss_pred             ccCCChhhhhh
Q psy8478          76 NKAPSAVSKKR   86 (88)
Q Consensus        76 ~~rp~~~~~~~   86 (88)
                      ..||+..+++.
T Consensus       353 RNRPSFrqil~  363 (904)
T KOG4721|consen  353 RNRPSFRQILL  363 (904)
T ss_pred             CCCccHHHHHH
Confidence            89999998863

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=99.62  E-value=4.9e-15  Score=79.00  Aligned_cols=86  Identities=28%  Similarity=0.625  Sum_probs=67.6

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCC----CCCChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNR----PANCSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~l~~~~~~   77 (88)
                      +.|++||.+....++.++|+|++|++++++++.|..||......+....+..+.....    +....+++.+|+..+|++
T Consensus       188 ~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~P~~  267 (280)
T cd05092         188 IRWMPPESILYRKFTTESDIWSFGVVLWEIFTYGKQPWYQLSNTEAIECITQGRELERPRTCPPEVYAIMQGCWQREPQQ  267 (280)
T ss_pred             ccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHcCccCCCCCCCCHHHHHHHHHHccCChhh
Confidence            3589999988878888999999999999998768888877766666666655543332    344567788889999999


Q ss_pred             CCChhhhhhc
Q psy8478          78 APSAVSKKRI   87 (88)
Q Consensus        78 rp~~~~~~~~   87 (88)
                      ||++.++.+.
T Consensus       268 Rp~~~~l~~~  277 (280)
T cd05092         268 RMVIKDIHSR  277 (280)
T ss_pred             CCCHHHHHHH
Confidence            9999999764

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=99.62  E-value=4.5e-15  Score=78.16  Aligned_cols=85  Identities=32%  Similarity=0.627  Sum_probs=68.9

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCC----CChHHHHHHHhhCcccC
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA----NCSHLIRSRNRLTENKA   78 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~l~~~~~~r   78 (88)
                      .|++||.+....++.++|+|++|++++++++.|..||...+..+....+..+.+...+.    .+.+++..|+..+|.+|
T Consensus       166 ~y~aPE~~~~~~~~~~~Di~s~G~~l~el~~~g~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~li~~c~~~~p~~R  245 (256)
T cd05114         166 KWSPPEVFNFSKYSSKSDVWSFGVLMWEVFTEGKMPFEKKSNYEVVEMISRGFRLYRPKLASMTVYEVMYSCWHEKPEGR  245 (256)
T ss_pred             hhCChhhcccCccchhhhhHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHccCCcccC
Confidence            58999998877788899999999999998876788998877777777777665443333    35677888999999999


Q ss_pred             CChhhhhhc
Q psy8478          79 PSAVSKKRI   87 (88)
Q Consensus        79 p~~~~~~~~   87 (88)
                      |++.++.+.
T Consensus       246 ps~~~l~~~  254 (256)
T cd05114         246 PTFAELLRA  254 (256)
T ss_pred             cCHHHHHHh
Confidence            999999764

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=99.62  E-value=6.9e-15  Score=79.04  Aligned_cols=84  Identities=37%  Similarity=0.655  Sum_probs=67.3

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCC----CCChHHHHHHHhhCcccC
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRP----ANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~l~~~~~~r   78 (88)
                      .|++||......++.++|+|++|++++++++.|..||.+....+....+..+.....+    ..+.+++.+|+..+|.+|
T Consensus       183 ~y~aPE~~~~~~~~~~~DvwSlG~il~el~t~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  262 (297)
T cd05089         183 RWMAIESLNYSVYTTKSDVWSFGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYRMEKPRNCDDEVYELMRQCWRDRPYER  262 (297)
T ss_pred             cccCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcCCChhhC
Confidence            4899998877778889999999999999986588999887777777777655444333    345577888888999999


Q ss_pred             CChhhhhh
Q psy8478          79 PSAVSKKR   86 (88)
Q Consensus        79 p~~~~~~~   86 (88)
                      |+++++.+
T Consensus       263 p~~~~i~~  270 (297)
T cd05089         263 PPFAQISV  270 (297)
T ss_pred             cCHHHHHH
Confidence            99999864

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=99.62  E-value=8.3e-15  Score=77.20  Aligned_cols=85  Identities=35%  Similarity=0.716  Sum_probs=67.8

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCC----ChHHHHHHHhhCcccC
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN----CSHLIRSRNRLTENKA   78 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~l~~~~~~r   78 (88)
                      .|++||.+....++.++|+|++|++++++++.|..||...+..+....+........+..    ..+++.+|+..+|.+|
T Consensus       163 ~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~R  242 (257)
T cd05060         163 KWYAPECINYGKFSSKSDVWSYGVTLWEAFSYGAKPYGEMKGAEVIAMLESGERLPRPEECPQEIYSIMLSCWKYRPEDR  242 (257)
T ss_pred             cccCHHHhcCCCCCccchHHHHHHHHHHHHcCCCCCcccCCHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHhcCChhhC
Confidence            589999988778888999999999999998658889987777777777766554444433    4567778888999999


Q ss_pred             CChhhhhhc
Q psy8478          79 PSAVSKKRI   87 (88)
Q Consensus        79 p~~~~~~~~   87 (88)
                      |++.++.++
T Consensus       243 p~~~~l~~~  251 (257)
T cd05060         243 PTFSELEST  251 (257)
T ss_pred             cCHHHHHHH
Confidence            999998764

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=99.61  E-value=4.5e-15  Score=79.41  Aligned_cols=85  Identities=31%  Similarity=0.620  Sum_probs=67.6

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCC----CCCChHHHHHHHhhCcccC
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNR----PANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~l~~~~~~r   78 (88)
                      .|++||.+....++.++|+|++|++++++++.|..||......+....+..+.....    +..+.+++.+|+..+|.+|
T Consensus       187 ~y~aPE~~~~~~~~~~sDiwslG~il~~l~t~g~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~~l~~~p~~R  266 (288)
T cd05093         187 RWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNEVIECITQGRVLQRPRTCPKEVYDLMLGCWQREPHMR  266 (288)
T ss_pred             cccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHccCChhhC
Confidence            589999988778888999999999999998768888887777777777766543333    3345667778889999999


Q ss_pred             CChhhhhhc
Q psy8478          79 PSAVSKKRI   87 (88)
Q Consensus        79 p~~~~~~~~   87 (88)
                      |++.++.+.
T Consensus       267 pt~~~v~~~  275 (288)
T cd05093         267 LNIKEIHSL  275 (288)
T ss_pred             CCHHHHHHH
Confidence            999998653

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=99.61  E-value=2.8e-15  Score=79.09  Aligned_cols=85  Identities=33%  Similarity=0.690  Sum_probs=67.9

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCC----CCCChHHHHHHHhhCcccC
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNR----PANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~l~~~~~~r   78 (88)
                      .|++||.+....++.+.|+|++|++++++++.|..||......+....+..+.+.+.    +..+.+++.+|+..+|++|
T Consensus       169 ~y~aPE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  248 (261)
T cd05072         169 KWTAPEAINFGSFTIKSDVWSFGILLYEIVTYGKIPYPGMSNSDVMSALQRGYRMPRMENCPDELYDIMKTCWKEKAEER  248 (261)
T ss_pred             ecCCHHHhccCCCChhhhhhhhHHHHHHHHccCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHccCCcccC
Confidence            589999988777888999999999999998658889987777777777665544333    3455677888999999999


Q ss_pred             CChhhhhhc
Q psy8478          79 PSAVSKKRI   87 (88)
Q Consensus        79 p~~~~~~~~   87 (88)
                      |+++++.+.
T Consensus       249 p~~~~i~~~  257 (261)
T cd05072         249 PTFDYLQSV  257 (261)
T ss_pred             cCHHHHHHH
Confidence            999998764

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=99.61  E-value=2.9e-15  Score=81.21  Aligned_cols=83  Identities=22%  Similarity=0.378  Sum_probs=67.1

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC---CCCCCChHHHHHHHhhCcccC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRL---NRPANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~l~~~~~~r   78 (88)
                      +.|++||.+.+..++.++|+|++|++++++++ |..||.+....+....+......   ..+..+.+++.+|+..+|.+|
T Consensus       160 ~~y~aPE~~~~~~~~~~~DiwslGvil~~l~~-G~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~~l~~dP~~R  238 (318)
T cd05570         160 PDYIAPEILSYQPYGPAVDWWALGVLLYEMLA-GQSPFEGDDEDELFQSILEDEVRYPRWLSKEAKSILKSFLTKNPEKR  238 (318)
T ss_pred             ccccCHHHhcCCCCCcchhhhhHHHHHHHHhh-CCCCCCCCCHHHHHHHHHcCCCCCCCcCCHHHHHHHHHHccCCHHHc
Confidence            46899999988888899999999999999999 99999887777777666544221   234456688889999999999


Q ss_pred             CCh-----hhhh
Q psy8478          79 PSA-----VSKK   85 (88)
Q Consensus        79 p~~-----~~~~   85 (88)
                      |++     .++.
T Consensus       239 ~s~~~~~~~~ll  250 (318)
T cd05570         239 LGCLPTGEQDIK  250 (318)
T ss_pred             CCCCCCCHHHHh
Confidence            998     6664

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=99.61  E-value=4.3e-15  Score=79.35  Aligned_cols=84  Identities=19%  Similarity=0.326  Sum_probs=62.4

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC--------------------CC----
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG--------------------RL----   57 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--------------------~~----   57 (88)
                      ..|++||.+.+..++.++|+|++|++++++++ |..||.+....+....+....                    ..    
T Consensus       165 ~~y~aPE~~~~~~~~~~~DiwslGvil~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (287)
T cd07848         165 RWYRSPELLLGAPYGKAVDMWSVGCILGELSD-GQPLFPGESEIDQLFTIQKVLGPLPAEQMKLFYSNPRFHGLRFPAVN  243 (287)
T ss_pred             cccCCcHHHcCCCCCCchhHHhHHHHHHHHHh-CCCCCCCCCHHHHHHHHHHhhCCCCHHHHHhhhccchhcccccCccc
Confidence            46899999988788889999999999999999 999998765443332221100                    00    


Q ss_pred             -----------CCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          58 -----------NRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        58 -----------~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                                 ..+..+.+++.+||..+|.+||+++++++
T Consensus       244 ~~~~~~~~~~~~~s~~~~dll~~~L~~~P~~R~s~~~~l~  283 (287)
T cd07848         244 HPQSLERRYLGILSGVLLDLMKNLLKLNPTDRYLTEQCLN  283 (287)
T ss_pred             CcccHHHhhhcccCHHHHHHHHHHccCCcccCCCHHHHhc
Confidence                       01223567889999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=99.61  E-value=3.4e-15  Score=82.19  Aligned_cols=84  Identities=17%  Similarity=0.304  Sum_probs=63.7

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCC-----------------------
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLN-----------------------   58 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----------------------   58 (88)
                      ..|++||.+.+..++.++|+|++|++++++++ |..||.+.+..+....+......+                       
T Consensus       189 ~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (364)
T cd07875         189 RYYRAPEVILGMGYKENVDIWSVGCIMGEMIK-GGVLFPGTDHIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYA  267 (364)
T ss_pred             CCcCCHHHHhCCCCCchhhHHhHHHHHHHHHh-CCCCCCCCCHHHHHHHHHHhcCCCCHHHHHhhhHHHHHHHhhCCCcC
Confidence            46899999988888899999999999999999 999998776655444332210000                       


Q ss_pred             ----------------------CCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          59 ----------------------RPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        59 ----------------------~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                                            ....+.+++.+|+..+|.+|||++++++
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dP~~R~t~~e~L~  317 (364)
T cd07875         268 GYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQ  317 (364)
T ss_pred             CCChHhhCccccccccccccccccHHHHHHHHHhcCcCcccCCCHHHHhc
Confidence                                  0112457899999999999999999865

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=99.61  E-value=8.4e-15  Score=77.80  Aligned_cols=83  Identities=19%  Similarity=0.378  Sum_probs=66.1

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCC-----CCCCChHHHHHHHhhCccc
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLN-----RPANCSHLIRSRNRLTENK   77 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~~~~l~~~~~~   77 (88)
                      .|++||.+....++.++|+|++|++++++++ |..||...+.......+..+..+.     .+..+.+++.+|+..+|.+
T Consensus       163 ~y~~PE~~~~~~~~~~sDv~slG~il~~l~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~p~~  241 (274)
T cd06609         163 FWMAPEVIKQSGYDEKADIWSLGITAIELAK-GEPPLSDLHPMRVLFLIPKNNPPSLEGNKFSKPFKDFVSLCLNKDPKE  241 (274)
T ss_pred             cccChhhhccCCCCchhhHHHHHHHHHHHHh-CCCCcccCchHHHHHHhhhcCCCCCcccccCHHHHHHHHHHhhCChhh
Confidence            5899999887778889999999999999999 999998766666655555443332     2334667888899999999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||+++++.+
T Consensus       242 Rpt~~~il~  250 (274)
T cd06609         242 RPSAKELLK  250 (274)
T ss_pred             CcCHHHHhh
Confidence            999999864

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=99.60  E-value=8.6e-15  Score=79.85  Aligned_cols=86  Identities=36%  Similarity=0.726  Sum_probs=64.5

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCH-HHHHHHHHcCCCCCCCCC----ChHHHHHHHhhCcc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTN-VDVLHYVRGGGRLNRPAN----CSHLIRSRNRLTEN   76 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~----~~~~~~~~l~~~~~   76 (88)
                      +.|++||.+....++.++|+|++|++++++++.|..||.+... ......+..+.....+..    +.+++..|+..+|.
T Consensus       240 ~~y~aPE~~~~~~~~~~sDiwslG~il~el~~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~  319 (338)
T cd05102         240 LKWMAPESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQINEEFCQRLKDGTRMRAPENATPEIYRIMLACWQGDPK  319 (338)
T ss_pred             ccccCcHHhhcCCCCcccCHHHHHHHHHHHHhCCCCCCCCCCccHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHccCChh
Confidence            3699999998888889999999999999998658889876543 334444444443333333    45677788888999


Q ss_pred             cCCChhhhhhc
Q psy8478          77 KAPSAVSKKRI   87 (88)
Q Consensus        77 ~rp~~~~~~~~   87 (88)
                      +||++.++.+.
T Consensus       320 ~RPs~~el~~~  330 (338)
T cd05102         320 ERPTFSALVEI  330 (338)
T ss_pred             hCcCHHHHHHH
Confidence            99999998764

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=99.60  E-value=1.3e-14  Score=77.31  Aligned_cols=84  Identities=45%  Similarity=0.949  Sum_probs=66.5

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCC----CCChHHHHHHHhhCcccC
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRP----ANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~l~~~~~~r   78 (88)
                      .|++||.+....++.++|+|++|++++++++.|..||.+....+....+..+.....+    ....+++.+|+..+|.+|
T Consensus       186 ~y~aPE~~~~~~~~~~~DiwslG~il~el~~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~cl~~~p~~R  265 (277)
T cd05036         186 KWMPPEAFLDGIFTSKTDVWSFGVLLWEIFSLGYMPYPGRTNQEVMEFVTGGGRLDPPKGCPGPVYRIMTDCWQHTPEDR  265 (277)
T ss_pred             hhCCHHHHhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcCCCcccC
Confidence            5899999987788999999999999999886588899877777666666544333333    345567788888999999


Q ss_pred             CChhhhhh
Q psy8478          79 PSAVSKKR   86 (88)
Q Consensus        79 p~~~~~~~   86 (88)
                      |++.++.+
T Consensus       266 ps~~~vl~  273 (277)
T cd05036         266 PNFATILE  273 (277)
T ss_pred             cCHHHHHH
Confidence            99999865

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>KOG0603|consensus

Probab=99.60  E-value=2e-15  Score=86.17  Aligned_cols=84  Identities=18%  Similarity=0.336  Sum_probs=68.2

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCH-HHHHHHHHcCC-CCCCCCCChHHHHHHHhhCcccCC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTN-VDVLHYVRGGG-RLNRPANCSHLIRSRNRLTENKAP   79 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~-~~~~~~~~~~~~~~~l~~~~~~rp   79 (88)
                      ..|.|||++....|+..+|+|++|+++|++++ |..||..... .++..++..+. .......+.+++.++|+.+|.+|+
T Consensus       477 ~~y~APEvl~~~~yt~acD~WSLGvlLy~ML~-G~tp~~~~P~~~ei~~~i~~~~~s~~vS~~AKdLl~~LL~~dP~~Rl  555 (612)
T KOG0603|consen  477 LQYVAPEVLAIQEYTEACDWWSLGVLLYEMLT-GRTLFAAHPAGIEIHTRIQMPKFSECVSDEAKDLLQQLLQVDPALRL  555 (612)
T ss_pred             hcccChhhhccCCCCcchhhHHHHHHHHHHHh-CCCccccCCchHHHHHhhcCCccccccCHHHHHHHHHhccCChhhCc
Confidence            36899999998899999999999999999999 9999976544 36666664431 123455678899999999999999


Q ss_pred             Chhhhhh
Q psy8478          80 SAVSKKR   86 (88)
Q Consensus        80 ~~~~~~~   86 (88)
                      ++.++..
T Consensus       556 ~~~~i~~  562 (612)
T KOG0603|consen  556 GADEIGA  562 (612)
T ss_pred             Chhhhcc
Confidence            9998853

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=99.60  E-value=1.1e-14  Score=77.48  Aligned_cols=85  Identities=44%  Similarity=0.808  Sum_probs=66.7

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCC----ChHHHHHHHhhCcccC
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN----CSHLIRSRNRLTENKA   78 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~l~~~~~~r   78 (88)
                      .|++||.+....++.++|+|++|++++++++.+..||.+....+....+..+.....+..    +.+++.+|+..+|.+|
T Consensus       186 ~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  265 (277)
T cd05062         186 RWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGMSNEQVLRFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMR  265 (277)
T ss_pred             hhcChhHhhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcCCChhhC
Confidence            589999988777888999999999999998756788887777776666655543333443    4567888888999999


Q ss_pred             CChhhhhhc
Q psy8478          79 PSAVSKKRI   87 (88)
Q Consensus        79 p~~~~~~~~   87 (88)
                      |++.++.+.
T Consensus       266 ps~~e~l~~  274 (277)
T cd05062         266 PSFLEIISS  274 (277)
T ss_pred             cCHHHHHHH
Confidence            999998653

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=99.60  E-value=1.2e-14  Score=82.58  Aligned_cols=84  Identities=19%  Similarity=0.383  Sum_probs=68.3

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCC----CCChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRP----ANCSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~l~~~~~~   77 (88)
                      +.|++||.+....++.++|+|++|++++++++ |..||.+....+....+..+...+.+    ..+.+++..|+..+|.+
T Consensus       235 ~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~t-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~  313 (478)
T PTZ00267        235 PYYLAPELWERKRYSKKADMWSLGVILYELLT-LHRPFKGPSQREIMQQVLYGKYDPFPCPVSSGMKALLDPLLSKNPAL  313 (478)
T ss_pred             ccccCHhHhCCCCCCcHHhHHHHHHHHHHHHh-CCCCCCCCCHHHHHHHHHhCCCCCCCccCCHHHHHHHHHHhccChhh
Confidence            46999999988888999999999999999999 99999887777777777655433333    34567788899999999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||++.++..
T Consensus       314 Rps~~~~l~  322 (478)
T PTZ00267        314 RPTTQQLLH  322 (478)
T ss_pred             CcCHHHHHh
Confidence            999988753

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=99.59  E-value=3.9e-15  Score=80.83  Aligned_cols=79  Identities=22%  Similarity=0.445  Sum_probs=65.1

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC---CCCCCChHHHHHHHhhCcccC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRL---NRPANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~l~~~~~~r   78 (88)
                      +.|++||.+....++.++|+|++|++++++++ |..||.+.+..+....+..+...   ..+..+.+++.+|+..+|.+|
T Consensus       160 ~~y~aPE~~~~~~~~~~~DiwslG~il~el~~-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~~L~~dP~~R  238 (320)
T cd05590         160 PDYIAPEILQEMLYGPSVDWWAMGVLLYEMLC-GHAPFEAENEDDLFEAILNDEVVYPTWLSQDAVDILKAFMTKNPTMR  238 (320)
T ss_pred             ccccCHHHHcCCCCCCccchhhhHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHcccCHHHC
Confidence            56999999988888889999999999999999 99999888887777777654321   123456678889999999999


Q ss_pred             CCh
Q psy8478          79 PSA   81 (88)
Q Consensus        79 p~~   81 (88)
                      +++
T Consensus       239 ~~~  241 (320)
T cd05590         239 LGS  241 (320)
T ss_pred             CCC
Confidence            998

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=99.59  E-value=6.3e-15  Score=80.07  Aligned_cols=78  Identities=21%  Similarity=0.471  Sum_probs=63.1

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC---CCCCCChHHHHHHHhhCcccC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRL---NRPANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~l~~~~~~r   78 (88)
                      +.|++||.+.+..++.++|+|++|++++++++ |..||.+....+....+..+...   ..+..+.+++.+|+..+|.+|
T Consensus       165 ~~y~aPE~~~~~~~~~~~DiwslG~il~el~~-G~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~~~L~~dP~~R  243 (324)
T cd05589         165 PEFLAPEVLTETSYTRAVDWWGLGVLIYEMLV-GESPFPGDDEEEVFDSIVNDEVRYPRFLSREAISIMRRLLRRNPERR  243 (324)
T ss_pred             ccccCHhHhcCCCCCcccchhhHHHHHHHHHh-CCCCCCCCCHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhhcCHhHc
Confidence            46899999988888889999999999999999 99999888877777776554321   234445678889999999999


Q ss_pred             CC
Q psy8478          79 PS   80 (88)
Q Consensus        79 p~   80 (88)
                      |+
T Consensus       244 ~~  245 (324)
T cd05589         244 LG  245 (324)
T ss_pred             CC
Confidence            94

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=99.59  E-value=6.5e-15  Score=78.65  Aligned_cols=84  Identities=17%  Similarity=0.248  Sum_probs=62.8

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC--------------------------
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG--------------------------   55 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--------------------------   55 (88)
                      ..|++||.+.+..++.++|+|++|+++++++. |..+|.+.........+....                          
T Consensus       171 ~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~-g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (288)
T cd07863         171 LWYRAPEVLLQSTYATPVDMWSVGCIFAEMFR-RKPLFCGNSEADQLGKIFDLIGLPPEDDWPRDVTLPRGAFSPRGPRP  249 (288)
T ss_pred             ccccCchHhhCCCCCCcchhhhHHHHHHHHHh-CCcCcCCCCHHHHHHHHHHHhCCCChhhCcccccccccccCCCCCCc
Confidence            45899999988888899999999999999988 989887666554444332100                          


Q ss_pred             ----CCCCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          56 ----RLNRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        56 ----~~~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                          .+..+..+.+++.+|+..+|.+||++.+++.
T Consensus       250 ~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~~~l~  284 (288)
T cd07863         250 VQSVVPEIEESGAQLLLEMLTFNPHKRISAFRALQ  284 (288)
T ss_pred             hHHhCcCcCHHHHHHHHHHhccCcccCCCHHHHhc
Confidence                0011223457889999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=99.59  E-value=7.5e-15  Score=77.25  Aligned_cols=84  Identities=21%  Similarity=0.416  Sum_probs=67.5

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCC----CChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA----NCSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~l~~~~~~   77 (88)
                      ..|++||.+....++.++|+|++|++++++++ |..||...+.......+..+...+.+.    ...+++.+|+..+|.+
T Consensus       164 ~~~~aPE~~~~~~~~~~~Dv~slG~i~~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~  242 (255)
T cd08219         164 PYYVPPEIWENMPYNNKSDIWSLGCILYELCT-LKHPFQANSWKNLILKVCQGSYKPLPSHYSYELRSLIKQMFKRNPRS  242 (255)
T ss_pred             ccccCHHHHccCCcCchhhhhhhchhheehhh-ccCCCCCCCHHHHHHHHhcCCCCCCCcccCHHHHHHHHHHHhCCccc
Confidence            35899999887778889999999999999999 999998777766666666554433333    3556888899999999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||++.++..
T Consensus       243 Rp~~~~il~  251 (255)
T cd08219         243 RPSATTILS  251 (255)
T ss_pred             CCCHHHHhh
Confidence            999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=99.59  E-value=1.5e-14  Score=77.30  Aligned_cols=85  Identities=41%  Similarity=0.738  Sum_probs=67.6

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCC----CCCChHHHHHHHhhCcccC
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNR----PANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~l~~~~~~r   78 (88)
                      .|++||.+....++.++|+|++|++++++++.|..||.+....+....+..+...+.    +..+.+++..|+..+|.+|
T Consensus       197 ~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~R  276 (288)
T cd05050         197 RWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGMQPYYGMAHEEVIYYVRDGNVLSCPDNCPLELYNLMRLCWSKLPSDR  276 (288)
T ss_pred             hhcCHHHHhcCCCCchhHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcccCcccC
Confidence            489999888778888999999999999988657778877777777777765543333    3446678888899999999


Q ss_pred             CChhhhhhc
Q psy8478          79 PSAVSKKRI   87 (88)
Q Consensus        79 p~~~~~~~~   87 (88)
                      |++.++.++
T Consensus       277 pt~~el~~~  285 (288)
T cd05050         277 PSFASINRI  285 (288)
T ss_pred             CCHHHHHHH
Confidence            999999764

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=99.59  E-value=9.4e-15  Score=77.11  Aligned_cols=85  Identities=35%  Similarity=0.673  Sum_probs=67.6

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCC----CChHHHHHHHhhCcccC
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA----NCSHLIRSRNRLTENKA   78 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~l~~~~~~r   78 (88)
                      .|++||.+....++.+.|+|++|++++++++.|..||.+....+....+..+...+.+.    .+.+++.+|+..+|.+|
T Consensus       168 ~y~~pe~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  247 (260)
T cd05067         168 KWTAPEAINYGTFTIKSDVWSFGILLTEIVTYGRIPYPGMTNPEVIQNLERGYRMPRPDNCPEELYELMRLCWKEKPEER  247 (260)
T ss_pred             cccCHHHhccCCcCcccchHHHHHHHHHHHhCCCCCCCCCChHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHccCChhhC
Confidence            58999988777788899999999999999866888998777776766666554444333    46677778888899999


Q ss_pred             CChhhhhhc
Q psy8478          79 PSAVSKKRI   87 (88)
Q Consensus        79 p~~~~~~~~   87 (88)
                      |++++++.+
T Consensus       248 p~~~~l~~~  256 (260)
T cd05067         248 PTFEYLRSV  256 (260)
T ss_pred             CCHHHHHHH
Confidence            999998764

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=99.59  E-value=9e-15  Score=77.18  Aligned_cols=84  Identities=36%  Similarity=0.647  Sum_probs=65.1

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCC----CCChHHHHHHHhhCcccC
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRP----ANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~l~~~~~~r   78 (88)
                      .|++||......++.++|+|++|++++++++.|.+|+...+..+....+..+..+..+    ..+.+.+.+|+..+|++|
T Consensus       167 ~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~R  246 (262)
T cd05058         167 KWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVDSFDITVYLLQGRRLLQPEYCPDPLYEVMLSCWHPKPEMR  246 (262)
T ss_pred             cccChhHhccCccchHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHcCCChhhC
Confidence            5899998877788889999999999999988567777776666666666555444333    345567778888899999


Q ss_pred             CChhhhhh
Q psy8478          79 PSAVSKKR   86 (88)
Q Consensus        79 p~~~~~~~   86 (88)
                      |++.++.+
T Consensus       247 p~~~~il~  254 (262)
T cd05058         247 PTFSELVS  254 (262)
T ss_pred             CCHHHHHH
Confidence            99999865

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=99.59  E-value=1.9e-15  Score=82.07  Aligned_cols=84  Identities=18%  Similarity=0.352  Sum_probs=66.8

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCC---CCCCCCChHHHHHHHhhCcccC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGR---LNRPANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~l~~~~~~r   78 (88)
                      +.|++||.+.+..++.++|+|++|++++++++ |..||.+.+.......+..+..   ...+..+.+++..|+..+|.+|
T Consensus       159 ~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~li~~~L~~dP~~R  237 (323)
T cd05571         159 PEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMC-GRLPFYNQDHEKLFELILMEEIRFPRTLSPEAKSLLAGLLKKDPKQR  237 (323)
T ss_pred             ccccChhhhcCCCCCccccCcccchhhhhhhc-CCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHccCCHHHc
Confidence            57999999988888999999999999999999 9999988777766666654321   1234456778888999999999


Q ss_pred             C-----Chhhhhh
Q psy8478          79 P-----SAVSKKR   86 (88)
Q Consensus        79 p-----~~~~~~~   86 (88)
                      |     ++.++++
T Consensus       238 ~~~~~~~~~~ll~  250 (323)
T cd05571         238 LGGGPEDAKEIME  250 (323)
T ss_pred             CCCCCCCHHHHHc
Confidence            9     6777654

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=99.59  E-value=2.5e-14  Score=76.34  Aligned_cols=84  Identities=33%  Similarity=0.659  Sum_probs=65.9

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCC----hHHHHHHHhhCcccC
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPANC----SHLIRSRNRLTENKA   78 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~----~~~~~~~l~~~~~~r   78 (88)
                      .|++||.+....++.++|+|++|++++++++.|..|+.+.........+..+.....+..+    ...+..|+..+|++|
T Consensus       176 ~y~~pE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~c~~~~p~~R  255 (279)
T cd05111         176 KWMALESILFGRYTHQSDVWSYGVTVWEMMSYGAEPYAGMRPHEVPDLLEKGERLAQPQICTIDVYMVMVKCWMIDENVR  255 (279)
T ss_pred             cccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHCCCcCCCCCCCCHHHHHHHHHHcCCCcccC
Confidence            5899999887788899999999999999987688899877766666666555544444443    456667888899999


Q ss_pred             CChhhhhh
Q psy8478          79 PSAVSKKR   86 (88)
Q Consensus        79 p~~~~~~~   86 (88)
                      |++.++.+
T Consensus       256 ps~~el~~  263 (279)
T cd05111         256 PTFKELAN  263 (279)
T ss_pred             cCHHHHHH
Confidence            99999865

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=99.59  E-value=1.5e-14  Score=75.99  Aligned_cols=86  Identities=48%  Similarity=0.869  Sum_probs=69.3

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCC----CCChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRP----ANCSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~l~~~~~~   77 (88)
                      +.|++||.+....++.+.|+|++|++++++++.|..||......+....+..+.....+    ..+.+.+.+|+..+|.+
T Consensus       171 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~  250 (262)
T cd00192         171 IRWMAPESLKDGIFTSKSDVWSFGVLLWEIFTLGATPYPGLSNEEVLEYLRKGYRLPKPEYCPDELYELMLSCWQLDPED  250 (262)
T ss_pred             ccccCHHHhccCCcchhhccHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCccCChHHHHHHHHHccCCccc
Confidence            46899999887778889999999999999988568999888887788777765544434    34556777888889999


Q ss_pred             CCChhhhhhc
Q psy8478          78 APSAVSKKRI   87 (88)
Q Consensus        78 rp~~~~~~~~   87 (88)
                      ||++.++++.
T Consensus       251 Rps~~~l~~~  260 (262)
T cd00192         251 RPTFSELVER  260 (262)
T ss_pred             CcCHHHHHHh
Confidence            9999998764

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=99.59  E-value=2.2e-14  Score=75.74  Aligned_cols=85  Identities=34%  Similarity=0.602  Sum_probs=68.2

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCC----CCCChHHHHHHHhhCcccC
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNR----PANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~l~~~~~~r   78 (88)
                      .|++||.+....++.++|+|++|++++++++.|..||.+....+....+..+...+.    +..+.+++.+|+..+|.+|
T Consensus       169 ~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R  248 (261)
T cd05068         169 KWTAPEAALYNRFSIKSDVWSFGILLTEIVTYGRMPYPGMTNAEVLQQVDQGYRMPCPPGCPKELYDIMLDCWKEDPDDR  248 (261)
T ss_pred             eccCccccccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCcCCHHHHHHHHHHhhcCcccC
Confidence            589999888777888999999999999998768889987777777766655543332    3456677888999999999


Q ss_pred             CChhhhhhc
Q psy8478          79 PSAVSKKRI   87 (88)
Q Consensus        79 p~~~~~~~~   87 (88)
                      |++.++.+.
T Consensus       249 p~~~~l~~~  257 (261)
T cd05068         249 PTFETLQWK  257 (261)
T ss_pred             CCHHHHHHH
Confidence            999998764

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=99.58  E-value=8.3e-15  Score=79.46  Aligned_cols=82  Identities=20%  Similarity=0.402  Sum_probs=65.3

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC---CCCCCChHHHHHHHhhCcccC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRL---NRPANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~l~~~~~~r   78 (88)
                      +.|++||.+.+..++.++|+|++|++++++++ |..||.+.+..+....+......   ..+..+.+++.+|+..+|.+|
T Consensus       160 ~~y~aPE~~~~~~~~~~~DvwslG~il~el~~-G~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~~l~~~P~~R  238 (316)
T cd05619         160 PDYIAPEILLGQKYNTSVDWWSFGVLLYEMLI-GQSPFHGHDEEELFQSIRMDNPCYPRWLTREAKDILVKLFVREPERR  238 (316)
T ss_pred             ccccCHHHHcCCCCCchhhhhhHHHHHHHHHh-CCCCCCCCCHHHHHHHHHhCCCCCCccCCHHHHHHHHHHhccCHhhc
Confidence            46899999988888899999999999999999 99999888777777666543221   123345678889999999999


Q ss_pred             CChh-hh
Q psy8478          79 PSAV-SK   84 (88)
Q Consensus        79 p~~~-~~   84 (88)
                      +++. ++
T Consensus       239 ~~~~~~l  245 (316)
T cd05619         239 LGVKGDI  245 (316)
T ss_pred             CCChHHH
Confidence            9986 44

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=99.58  E-value=1.9e-14  Score=76.04  Aligned_cols=86  Identities=33%  Similarity=0.663  Sum_probs=67.4

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCC----ChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN----CSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~l~~~~~~   77 (88)
                      +.|++||.+....++.++|+|++|+++++++..|..||......+....+..+.+...+..    +.+.+.+|+..+++.
T Consensus       162 ~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~c~~~~~~~  241 (257)
T cd05115         162 LKWYAPECINFRKFSSRSDVWSYGITMWEAFSYGQKPYKKMKGPEVMSFIEQGKRLDCPAECPPEMYALMKDCWIYKWED  241 (257)
T ss_pred             cccCCHHHHccCCCCchhhHHHHHHHHHHHhcCCCCCcCcCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHcCCChhh
Confidence            3589999987777888999999999999988558899988777777777766655544444    445666777788899


Q ss_pred             CCChhhhhhc
Q psy8478          78 APSAVSKKRI   87 (88)
Q Consensus        78 rp~~~~~~~~   87 (88)
                      ||++.++.+.
T Consensus       242 Rp~~~~i~~~  251 (257)
T cd05115         242 RPNFAKVEER  251 (257)
T ss_pred             CcCHHHHHHH
Confidence            9999998653

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=99.58  E-value=1.6e-14  Score=76.25  Aligned_cols=85  Identities=33%  Similarity=0.608  Sum_probs=67.2

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCC----CChHHHHHHHhhCcccC
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA----NCSHLIRSRNRLTENKA   78 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~l~~~~~~r   78 (88)
                      .|++||......++.+.|+|++|++++++++.|..||.+....+....+..+...+.+.    .+.+++.+|+..+|.+|
T Consensus       168 ~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  247 (260)
T cd05070         168 KWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMNNREVLEQVERGYRMPCPQDCPISLHELMLQCWKKDPEER  247 (260)
T ss_pred             cccChHHHhcCCCcchhhhHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCcCCHHHHHHHHHHcccCcccC
Confidence            58999988777788899999999999999876788888777777777776554444443    45567778888899999


Q ss_pred             CChhhhhhc
Q psy8478          79 PSAVSKKRI   87 (88)
Q Consensus        79 p~~~~~~~~   87 (88)
                      |++.++.+.
T Consensus       248 pt~~~l~~~  256 (260)
T cd05070         248 PTFEYLQSF  256 (260)
T ss_pred             cCHHHHHHH
Confidence            999988653

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=99.58  E-value=1.9e-14  Score=76.17  Aligned_cols=86  Identities=49%  Similarity=0.907  Sum_probs=67.5

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCC----CCCChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNR----PANCSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~l~~~~~~   77 (88)
                      +.|++||.+....++.++|+|++|++++++++.|..||......+....+..+.....    +..+.+++.+|+..+|.+
T Consensus       177 ~~y~aPE~~~~~~~~~~~Dv~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~  256 (269)
T cd05044         177 VRWMAPESLLDGKFTTQSDVWSFGVLMWEILTLGQQPYPALNNQEVLQHVTAGGRLQKPENCPDKIYQLMTNCWAQDPSE  256 (269)
T ss_pred             ccccCHHHHccCCcccchhHHHHHHHHHHHHHcCCCCCcccCHHHHHHHHhcCCccCCcccchHHHHHHHHHHcCCCccc
Confidence            3588999988878888999999999999988668889877776666666654433332    344567788888899999


Q ss_pred             CCChhhhhhc
Q psy8478          78 APSAVSKKRI   87 (88)
Q Consensus        78 rp~~~~~~~~   87 (88)
                      ||++.++.+.
T Consensus       257 Rp~~~~i~~~  266 (269)
T cd05044         257 RPTFDRIQEI  266 (269)
T ss_pred             CCCHHHHHHH
Confidence            9999998764

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>KOG0589|consensus

Probab=99.58  E-value=9.3e-15  Score=81.25  Aligned_cols=85  Identities=25%  Similarity=0.416  Sum_probs=72.4

Q ss_pred             CCcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCC----hHHHHHHHhhCcc
Q psy8478           1 MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPANC----SHLIRSRNRLTEN   76 (88)
Q Consensus         1 ~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~----~~~~~~~l~~~~~   76 (88)
                      ++.|++||.+.+..|+.++|+|++||.+++++. -+.+|.+.+...+...|..+...+.|...    ..++.+++..+|.
T Consensus       169 Tp~YmcPEil~d~pYn~KSDiWsLGC~~yEm~~-lk~aF~a~~m~~Li~ki~~~~~~Plp~~ys~el~~lv~~~l~~~P~  247 (426)
T KOG0589|consen  169 TPYYMCPEILSDIPYNEKSDIWSLGCCLYEMCT-LKPAFKASNMSELILKINRGLYSPLPSMYSSELRSLVKSMLRKNPE  247 (426)
T ss_pred             CCcccCHHHhCCCCCCccCcchhhcchHHHHHh-cccccCccchHHHHHHHhhccCCCCCccccHHHHHHHHHHhhcCCc
Confidence            478999999999999999999999999999999 88899999988888888776655555544    4566788999999


Q ss_pred             cCCChhhhhh
Q psy8478          77 KAPSAVSKKR   86 (88)
Q Consensus        77 ~rp~~~~~~~   86 (88)
                      .||++.+++.
T Consensus       248 ~RPsa~~LL~  257 (426)
T KOG0589|consen  248 HRPSALELLR  257 (426)
T ss_pred             cCCCHHHHhh
Confidence            9999998864

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=99.58  E-value=2.9e-14  Score=75.59  Aligned_cols=84  Identities=38%  Similarity=0.763  Sum_probs=66.4

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCC----CCChHHHHHHHhhCcccC
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRP----ANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~l~~~~~~r   78 (88)
                      .|++||......++.+.|+|++|++++++++.|..||.+....+....+..+.....+    ..+.+.+..|+..+|.+|
T Consensus       179 ~~~~pe~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  258 (272)
T cd05075         179 KWIAIESLADRVYTTKSDVWSFGVTMWEIATRGQTPYPGVENSEIYDYLRQGNRLKQPPDCLDGLYSLMSSCWLLNPKDR  258 (272)
T ss_pred             ccCCHHHccCCCcChHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCCcccC
Confidence            5788998877778889999999999999987578888877777777777665443333    345567778888899999


Q ss_pred             CChhhhhh
Q psy8478          79 PSAVSKKR   86 (88)
Q Consensus        79 p~~~~~~~   86 (88)
                      |++.++.+
T Consensus       259 ps~~~l~~  266 (272)
T cd05075         259 PSFETLRC  266 (272)
T ss_pred             cCHHHHHH
Confidence            99999875

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=99.58  E-value=1.2e-14  Score=76.36  Aligned_cols=84  Identities=24%  Similarity=0.400  Sum_probs=67.5

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCC----CCCChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNR----PANCSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~l~~~~~~   77 (88)
                      +.|++||......++.++|+|++|++++++++ |..||......+....+..+.....    +..+.+.+.+|+..+|++
T Consensus       165 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~  243 (256)
T cd08529         165 PYYLSPELCEDKPYNEKSDVWALGVVLYECCT-GKHPFDANNQGALILKIIRGVFPPVSQMYSQQLAQLIDQCLTKDYRQ  243 (256)
T ss_pred             ccccCHHHhcCCCCCCccchHHHHHHHHHHHh-CCCCCCCCCHHHHHHHHHcCCCCCCccccCHHHHHHHHHHccCCccc
Confidence            35889999887778889999999999999999 9999987777666666665543333    334667888888899999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||++.++.+
T Consensus       244 Rp~~~~ll~  252 (256)
T cd08529         244 RPDTFQLLR  252 (256)
T ss_pred             CcCHHHHhh
Confidence            999999875

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=99.58  E-value=1.6e-14  Score=79.42  Aligned_cols=84  Identities=17%  Similarity=0.312  Sum_probs=62.0

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHc----------------------C-CCC-
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRG----------------------G-GRL-   57 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~----------------------~-~~~-   57 (88)
                      ..|++||.+.+..++.++|+|++|++++++++ |..||.+.+.......+..                      . ... 
T Consensus       186 ~~y~aPE~~~~~~~~~~~DiwSlG~il~el~t-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (359)
T cd07876         186 RYYRAPEVILGMGYKENVDIWSVGCIMGELVK-GSVIFQGTDHIDQWNKVIEQLGTPSAEFMNRLQPTVRNYVENRPQYP  264 (359)
T ss_pred             CCCCCchhccCCCCCcchhhHHHHHHHHHHHh-CCCCCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhCCCCC
Confidence            46899999988888899999999999999999 9999986654332221110                      0 000 


Q ss_pred             ---------------------CCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          58 ---------------------NRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        58 ---------------------~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                                           ..+..+.+++.+|+..+|.+|||+.++++
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~  314 (359)
T cd07876         265 GISFEELFPDWIFPSESERDKLKTSQARDLLSKMLVIDPDKRISVDEALR  314 (359)
T ss_pred             CcchhhhccccccccccccccccchhHHHHHHHHhccCcccCCCHHHHhc
Confidence                                 01234568899999999999999999864

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>KOG0611|consensus

Probab=99.58  E-value=1.4e-14  Score=80.44  Aligned_cols=84  Identities=20%  Similarity=0.432  Sum_probs=74.0

Q ss_pred             CCcccCcchhccCCCC-chhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC--CCCCCCCChHHHHHHHhhCccc
Q psy8478           1 MTRWMAPECLVDGLFS-SQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG--RLNRPANCSHLIRSRNRLTENK   77 (88)
Q Consensus         1 ~~~~~~pe~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~l~~~~~~   77 (88)
                      ++-|..||++++..|. +.+|.|++|+++|.+.+ |..||++.++..+...|..|.  .++.|..+.-+|+-+|.++|.+
T Consensus       215 SPLYASPEIvNG~PY~GPEVDsWsLGvLLYtLVy-GtMPFDG~Dhk~lvrQIs~GaYrEP~~PSdA~gLIRwmLmVNP~R  293 (668)
T KOG0611|consen  215 SPLYASPEIVNGTPYKGPEVDSWSLGVLLYTLVY-GTMPFDGRDHKRLVRQISRGAYREPETPSDASGLIRWMLMVNPER  293 (668)
T ss_pred             CcccCCccccCCCCCCCCccchhhHHHHHHHHhh-cccccCCchHHHHHHHhhcccccCCCCCchHHHHHHHHHhcCccc
Confidence            4678999999998885 57999999999999999 999999999999888887663  4566888999999999999999


Q ss_pred             CCChhhhh
Q psy8478          78 APSAVSKK   85 (88)
Q Consensus        78 rp~~~~~~   85 (88)
                      |.|+++|.
T Consensus       294 RATieDiA  301 (668)
T KOG0611|consen  294 RATIEDIA  301 (668)
T ss_pred             chhHHHHh
Confidence            99999874

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=99.58  E-value=1.5e-14  Score=76.57  Aligned_cols=86  Identities=36%  Similarity=0.656  Sum_probs=68.4

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCC----CCCChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNR----PANCSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~l~~~~~~   77 (88)
                      +.|++||.+....++.+.|+|++|++++++++.|..|+......+....+..+...+.    +..+.+++..|+..+|.+
T Consensus       172 ~~y~~Pe~~~~~~~~~~~Dv~slG~~l~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~  251 (266)
T cd05033         172 IRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSYGERPYWDMSNQDVIKAVEDGYRLPPPMDCPSALYQLMLDCWQKDRNE  251 (266)
T ss_pred             ccccChhhhccCCCccccchHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCCccc
Confidence            3589999988778888999999999999988658889877777777777766544433    345566777888899999


Q ss_pred             CCChhhhhhc
Q psy8478          78 APSAVSKKRI   87 (88)
Q Consensus        78 rp~~~~~~~~   87 (88)
                      ||+++++.+.
T Consensus       252 Rp~~~ei~~~  261 (266)
T cd05033         252 RPTFSQIVST  261 (266)
T ss_pred             CcCHHHHHHH
Confidence            9999998764

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>KOG0605|consensus

Probab=99.58  E-value=4.1e-15  Score=83.73  Aligned_cols=84  Identities=15%  Similarity=0.347  Sum_probs=66.3

Q ss_pred             CCcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcC---CCCCC----CCCChHHHHHHHhh
Q psy8478           1 MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGG---GRLNR----PANCSHLIRSRNRL   73 (88)
Q Consensus         1 ~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~~~~----~~~~~~~~~~~l~~   73 (88)
                      +|-|+|||++.+..|+..+|+||+||++|+++. |.+||.+..+.+....|..-   ...+.    ...+.++|..++. 
T Consensus       351 TPDYiAPEVll~kgY~~~cDwWSLG~ImyEmLv-GyPPF~s~tp~~T~rkI~nwr~~l~fP~~~~~s~eA~DLI~rll~-  428 (550)
T KOG0605|consen  351 TPDYIAPEVLLGKGYGKECDWWSLGCIMYEMLV-GYPPFCSETPQETYRKIVNWRETLKFPEEVDLSDEAKDLITRLLC-  428 (550)
T ss_pred             CccccchHHHhcCCCCccccHHHHHHHHHHHHh-CCCCCCCCCHHHHHHHHHHHhhhccCCCcCcccHHHHHHHHHHhc-
Confidence            467999999999999999999999999999999 99999999999999888532   22222    2345667777777 


Q ss_pred             CcccCCChhhhhh
Q psy8478          74 TENKAPSAVSKKR   86 (88)
Q Consensus        74 ~~~~rp~~~~~~~   86 (88)
                      ++++|....-+.+
T Consensus       429 d~~~RLG~~G~~E  441 (550)
T KOG0605|consen  429 DPENRLGSKGAEE  441 (550)
T ss_pred             CHHHhcCcccHHH
Confidence            7888887444433

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=99.58  E-value=9.3e-15  Score=78.41  Aligned_cols=84  Identities=19%  Similarity=0.348  Sum_probs=66.3

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC---CCCCCChHHHHHHHhhCcccC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRL---NRPANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~l~~~~~~r   78 (88)
                      +.|++||.+....++.++|+|++|++++++++ |..||.+....+....+..+...   ..+..+.+++.+|+..+|.+|
T Consensus       162 ~~y~aPE~~~~~~~~~~~DiwSlG~il~~l~~-g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~~l~~dp~~R  240 (291)
T cd05612         162 PEYLAPEVIQSKGHNKAVDWWALGILIYEMLV-GYPPFFDDNPFGIYEKILAGKLEFPRHLDLYAKDLIKKLLVVDRTRR  240 (291)
T ss_pred             hhhcCHHHHcCCCCCchhhHHHHHHHHHHHHh-CCCCCCCCCHHHHHHHHHhCCcCCCccCCHHHHHHHHHHcCCCHHHc
Confidence            46899999988788889999999999999999 99999888777777776554311   123346678889999999999


Q ss_pred             CC-----hhhhhh
Q psy8478          79 PS-----AVSKKR   86 (88)
Q Consensus        79 p~-----~~~~~~   86 (88)
                      ++     ++++.+
T Consensus       241 ~~~~~~~~~~~l~  253 (291)
T cd05612         241 LGNMKNGADDVKN  253 (291)
T ss_pred             cCCccCCHHHHhc
Confidence            95     776643

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=99.58  E-value=3.1e-15  Score=80.91  Aligned_cols=79  Identities=18%  Similarity=0.320  Sum_probs=63.3

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCC---CCCCCCChHHHHHHHhhCcccC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGR---LNRPANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~l~~~~~~r   78 (88)
                      +.|++||.+.+..++.++|+|++|++++++++ |..||.+....+....+..+..   ...+..+.+++.+|+..+|.+|
T Consensus       157 ~~y~aPE~~~~~~~~~~~DvwslGvil~el~t-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R  235 (312)
T cd05585         157 PEYLAPELLLGHGYTKAVDWWTLGVLLYEMLT-GLPPFYDENVNEMYRKILQEPLRFPDGFDRDAKDLLIGLLSRDPTRR  235 (312)
T ss_pred             cccCCHHHHcCCCCCCccceechhHHHHHHHh-CCCCcCCCCHHHHHHHHHcCCCCCCCcCCHHHHHHHHHHcCCCHHHc
Confidence            56899999988888899999999999999999 9999988777777666654421   1234456678888999999999


Q ss_pred             CCh
Q psy8478          79 PSA   81 (88)
Q Consensus        79 p~~   81 (88)
                      |+.
T Consensus       236 ~~~  238 (312)
T cd05585         236 LGY  238 (312)
T ss_pred             CCC
Confidence            864

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=99.58  E-value=2.1e-14  Score=75.59  Aligned_cols=85  Identities=33%  Similarity=0.623  Sum_probs=67.7

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCC----CCCChHHHHHHHhhCcccC
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNR----PANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~l~~~~~~r   78 (88)
                      .|++||.+....++.++|+|++|++++++++.|..||......+....+..+.....    +..+.+++..|+..+|.+|
T Consensus       166 ~~~aPe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~p~~R  245 (256)
T cd05112         166 KWSSPEVFSFSKYSSKSDVWSFGVLMWEVFSEGKTPYENRSNSEVVETINAGFRLYKPRLASQSVYELMQHCWKERPEDR  245 (256)
T ss_pred             hhcCHhHhccCCcChHHHHHHHHHHHHHHHcCCCCCCCcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHcccChhhC
Confidence            589999888777888999999999999988768889987777777777765543332    3345677888888999999


Q ss_pred             CChhhhhhc
Q psy8478          79 PSAVSKKRI   87 (88)
Q Consensus        79 p~~~~~~~~   87 (88)
                      |++.++.+.
T Consensus       246 p~~~~~l~~  254 (256)
T cd05112         246 PSFSLLLHQ  254 (256)
T ss_pred             CCHHHHHHh
Confidence            999999764

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=99.58  E-value=1.9e-14  Score=76.23  Aligned_cols=85  Identities=34%  Similarity=0.682  Sum_probs=66.7

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCC----CCChHHHHHHHhhCcccC
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRP----ANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~l~~~~~~r   78 (88)
                      .|++||.+....++.++|+|++|++++++++.|..||......+....+..+...+.+    ..+.+++.+|+..+|+.|
T Consensus       175 ~y~~PE~~~~~~~~~~~Dv~slG~il~ell~~g~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~li~~c~~~~p~~R  254 (268)
T cd05063         175 RWTAPEAIAYRKFTSASDVWSFGIVMWEVMSFGERPYWDMSNHEVMKAINDGFRLPAPMDCPSAVYQLMLQCWQQDRARR  254 (268)
T ss_pred             eecCHHHhhcCCcChHhHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcCCCcccC
Confidence            5899999887778889999999999999876588899877777777777655444333    344567777888889999


Q ss_pred             CChhhhhhc
Q psy8478          79 PSAVSKKRI   87 (88)
Q Consensus        79 p~~~~~~~~   87 (88)
                      |++.++.+.
T Consensus       255 p~~~~i~~~  263 (268)
T cd05063         255 PRFVDIVNL  263 (268)
T ss_pred             cCHHHHHHH
Confidence            999998754

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=99.58  E-value=1.6e-14  Score=76.25  Aligned_cols=85  Identities=39%  Similarity=0.647  Sum_probs=67.0

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCC----CChHHHHHHHhhCcccC
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA----NCSHLIRSRNRLTENKA   78 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~l~~~~~~r   78 (88)
                      .|++||......++.+.|+|++|++++++++.|..|+......+....+..+.+...+.    .+.+++.+|+..+|.+|
T Consensus       166 ~y~~pe~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~R  245 (256)
T cd05113         166 RWSPPEVLLYSKFSSKSDVWAFGVLMWEVYSLGKMPYERFNNSETVEKVSQGLRLYRPHLASEKVYAIMYSCWHEKAEER  245 (256)
T ss_pred             hhCCHHHHhcCcccchhHHHHHHHHHHHHhcCCCCCcCcCCHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcCCCcccC
Confidence            58899998877788899999999999998876888988777766666776654443333    45567778888899999


Q ss_pred             CChhhhhhc
Q psy8478          79 PSAVSKKRI   87 (88)
Q Consensus        79 p~~~~~~~~   87 (88)
                      |++.++.+.
T Consensus       246 p~~~~ll~~  254 (256)
T cd05113         246 PTFQQLLSS  254 (256)
T ss_pred             CCHHHHHHh
Confidence            999998764

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=99.58  E-value=3.7e-14  Score=74.80  Aligned_cols=85  Identities=36%  Similarity=0.622  Sum_probs=68.4

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCC----CCCChHHHHHHHhhCcccC
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNR----PANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~l~~~~~~r   78 (88)
                      .|++||.+.+..++.++|+|++|++++++++.|..||.+.........+..+...+.    +..+.+.+.+|+..+|.+|
T Consensus       169 ~y~~PE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R  248 (261)
T cd05034         169 KWTAPEAANYGRFTIKSDVWSFGILLTEIVTYGRVPYPGMTNREVLEQVERGYRMPRPPNCPEELYDLMLQCWDKDPEER  248 (261)
T ss_pred             cccCHHHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcccCcccC
Confidence            589999988777888999999999999998768899987777777777766544433    3455667778899999999


Q ss_pred             CChhhhhhc
Q psy8478          79 PSAVSKKRI   87 (88)
Q Consensus        79 p~~~~~~~~   87 (88)
                      |+++++.+.
T Consensus       249 p~~~~l~~~  257 (261)
T cd05034         249 PTFEYLQSF  257 (261)
T ss_pred             CCHHHHHHH
Confidence            999998764

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=99.57  E-value=2.4e-14  Score=76.10  Aligned_cols=85  Identities=41%  Similarity=0.809  Sum_probs=67.0

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCC----CChHHHHHHHhhCcccC
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA----NCSHLIRSRNRLTENKA   78 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~l~~~~~~r   78 (88)
                      .|++||.+....++.++|+|++|++++++++.|..||.+....+....+..+.....|.    .+.+++..|+..+|++|
T Consensus       186 ~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  265 (277)
T cd05032         186 RWMAPESLKDGVFTTKSDVWSFGVVLWEMATLAEQPYQGLSNEEVLKFVIDGGHLDLPENCPDKLLELMRMCWQYNPKMR  265 (277)
T ss_pred             cccCHHHHhcCCCCcccchHHHHHHHHHhhccCCCCCccCCHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcCCChhhC
Confidence            58999998877788899999999999999865888888777777777666554444443    44567778888889999


Q ss_pred             CChhhhhhc
Q psy8478          79 PSAVSKKRI   87 (88)
Q Consensus        79 p~~~~~~~~   87 (88)
                      |++.++.+.
T Consensus       266 pt~~~l~~~  274 (277)
T cd05032         266 PTFLEIVSS  274 (277)
T ss_pred             CCHHHHHHH
Confidence            999998754

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=99.57  E-value=2.9e-14  Score=75.17  Aligned_cols=85  Identities=35%  Similarity=0.616  Sum_probs=67.4

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCC----CCCChHHHHHHHhhCcccC
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNR----PANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~l~~~~~~r   78 (88)
                      .|++||.+....++.++|+|++|++++++++.|..||......+....+..+.+...    +..+.+++..|+..+|++|
T Consensus       166 ~y~~Pe~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~R  245 (256)
T cd05059         166 KWAPPEVFDYSRFSSKSDVWSFGVLMWEVFSEGKMPYERFSNSEVVESVSAGYRLYRPKLAPTEVYTIMYSCWHEKPEDR  245 (256)
T ss_pred             cccCHHHhccCCCCchhhHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHhcCChhhC
Confidence            589999988778888999999999999988757888887777777666665543333    3445667778888899999


Q ss_pred             CChhhhhhc
Q psy8478          79 PSAVSKKRI   87 (88)
Q Consensus        79 p~~~~~~~~   87 (88)
                      |++.++.+.
T Consensus       246 pt~~~~l~~  254 (256)
T cd05059         246 PAFKKLLSQ  254 (256)
T ss_pred             cCHHHHHHH
Confidence            999998764

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=99.57  E-value=2.3e-14  Score=75.39  Aligned_cols=84  Identities=23%  Similarity=0.351  Sum_probs=66.1

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCC----CCCChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNR----PANCSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~l~~~~~~   77 (88)
                      +.|++||......++.++|+|++|++++++++ |..||...+.......+..+..+..    +..+.+++.+|+..+|.+
T Consensus       166 ~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~  244 (257)
T cd08223         166 PYYMSPELFSNKPYNYKSDVWALGCCVYEMAT-LKHAFNAKDMNSLVYRIIEGKLPPMPKDYSPELGELIATMLSKRPEK  244 (257)
T ss_pred             cCccChhHhcCCCCCchhhhHHHHHHHHHHHc-CCCCCCCCCHHHHHHHHHhcCCCCCccccCHHHHHHHHHHhccCccc
Confidence            46899999887778889999999999999999 8889887766665555554433222    344667788899999999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||++.++.+
T Consensus       245 Rp~~~~~l~  253 (257)
T cd08223         245 RPSVKSILR  253 (257)
T ss_pred             CCCHHHHhc
Confidence            999999865

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=99.57  E-value=2.9e-14  Score=75.30  Aligned_cols=85  Identities=33%  Similarity=0.622  Sum_probs=67.0

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCC----CCCChHHHHHHHhhCcccC
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNR----PANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~l~~~~~~r   78 (88)
                      .|++||......++.+.|+|++|++++++++.|..||.+....+....+..+...+.    +..+.+++.+|+..+|.+|
T Consensus       168 ~y~~Pe~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  247 (260)
T cd05069         168 KWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMVNREVLEQVERGYRMPCPQGCPESLHELMKLCWKKDPDER  247 (260)
T ss_pred             hhCCHHHhccCCcChHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCcccCHHHHHHHHHHccCCcccC
Confidence            589999887777888999999999999998757888887777666666665544433    3345677778888899999


Q ss_pred             CChhhhhhc
Q psy8478          79 PSAVSKKRI   87 (88)
Q Consensus        79 p~~~~~~~~   87 (88)
                      |+++++.+.
T Consensus       248 p~~~~i~~~  256 (260)
T cd05069         248 PTFEYIQSF  256 (260)
T ss_pred             cCHHHHHHH
Confidence            999998764

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>PTZ00036 glycogen synthase kinase; Provisional

Probab=99.57  E-value=1.2e-14  Score=81.97  Aligned_cols=84  Identities=17%  Similarity=0.323  Sum_probs=62.6

Q ss_pred             CcccCcchhccC-CCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcC--CC----------------------
Q psy8478           2 TRWMAPECLVDG-LFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGG--GR----------------------   56 (88)
Q Consensus         2 ~~~~~pe~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~----------------------   56 (88)
                      +.|+|||.+.+. .++.++|+|++|++++++++ |..||.+....+....+...  .+                      
T Consensus       234 ~~y~aPE~~~~~~~~~~~~DiwSlGvil~ellt-G~~pf~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  312 (440)
T PTZ00036        234 RFYRAPELMLGATNYTTHIDLWSLGCIIAEMIL-GYPIFSGQSSVDQLVRIIQVLGTPTEDQLKEMNPNYADIKFPDVKP  312 (440)
T ss_pred             cCccCHHHhcCCCCCCcHHHHHHHHHHHHHHHh-CCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhchhhhcccCCccCc
Confidence            468999988754 68889999999999999999 99999877655444433210  00                      


Q ss_pred             --------CCCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          57 --------LNRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        57 --------~~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                              ...+..+.+++.+||..+|.+||++.++++
T Consensus       313 ~~l~~~~p~~~~~~~~~li~~~L~~dP~~R~ta~e~l~  350 (440)
T PTZ00036        313 KDLKKVFPKGTPDDAINFISQFLKYEPLKRLNPIEALA  350 (440)
T ss_pred             hhHHHHhccCCCHHHHHHHHHHCCCChhHCcCHHHHhC
Confidence                    012334567888999999999999998764

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=99.57  E-value=1.8e-14  Score=75.61  Aligned_cols=85  Identities=35%  Similarity=0.663  Sum_probs=67.5

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCC----CCCCChHHHHHHHhhCcccC
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLN----RPANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~l~~~~~~r   78 (88)
                      .|++||.+....++.+.|+|++|++++++++.|..||...........+..+.+..    .+..+.+++.+|+..+|++|
T Consensus       159 ~y~aPE~~~~~~~~~~~Di~slG~ll~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  238 (250)
T cd05085         159 KWTAPEALNYGRYSSESDVWSYGILLWETFSLGVCPYPGMTNQQAREQVEKGYRMSCPQKCPDDVYKVMQRCWDYKPENR  238 (250)
T ss_pred             cccCHHHhccCCCCchhHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcccCcccC
Confidence            48999998877788899999999999998876888998777666666665554332    34456778888999999999


Q ss_pred             CChhhhhhc
Q psy8478          79 PSAVSKKRI   87 (88)
Q Consensus        79 p~~~~~~~~   87 (88)
                      |++.++.+.
T Consensus       239 p~~~~l~~~  247 (250)
T cd05085         239 PKFSELQKE  247 (250)
T ss_pred             CCHHHHHHH
Confidence            999998764

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=99.57  E-value=3.1e-14  Score=74.81  Aligned_cols=85  Identities=36%  Similarity=0.643  Sum_probs=65.4

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCC----CCChHHHHHHHhhCcccC
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRP----ANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~l~~~~~~r   78 (88)
                      .|++||.+....++.++|+|++|++++++++.|..|+...........+..+.+...+    ..+.+++.+|+..+|++|
T Consensus       161 ~y~aPE~~~~~~~~~~~Dv~slG~il~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  240 (252)
T cd05084         161 KWTAPEALNYGRYSSESDVWSFGILLWEAFSLGAVPYANLSNQQTREAIEQGVRLPCPELCPDAVYRLMERCWEYDPGQR  240 (252)
T ss_pred             eecCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccCHHHHHHHHHcCCCCCCcccCCHHHHHHHHHHcCCChhhC
Confidence            4899999887778889999999999999887578888766665555555444333333    345667788888999999


Q ss_pred             CChhhhhhc
Q psy8478          79 PSAVSKKRI   87 (88)
Q Consensus        79 p~~~~~~~~   87 (88)
                      |++.++.+.
T Consensus       241 ps~~~~~~~  249 (252)
T cd05084         241 PSFSTVHQE  249 (252)
T ss_pred             cCHHHHHHH
Confidence            999999764

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=99.57  E-value=2.8e-14  Score=75.30  Aligned_cols=85  Identities=33%  Similarity=0.643  Sum_probs=67.1

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCC----CCChHHHHHHHhhCcccC
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRP----ANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~l~~~~~~r   78 (88)
                      .|++||.+....++.++|+|++|++++++++.|..||......+....+..+.+.+.+    ..+.+.+.+|+..+|.+|
T Consensus       169 ~~~~PE~~~~~~~~~~~DiwslG~~l~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R  248 (261)
T cd05148         169 KWTAPEAASHGTFSTKSDVWSFGILLYEMFTYGQVPYPGMNNHEVYDQITAGYRMPCPAKCPQEIYKIMLECWAAEPEDR  248 (261)
T ss_pred             EecCHHHHccCCCCchhhHHHHHHHHHHHHcCCCCCCCcCCHHHHHHHHHhCCcCCCCCCCCHHHHHHHHHHcCCCchhC
Confidence            4889998877778889999999999999987578899877777677666655444333    345567778888999999


Q ss_pred             CChhhhhhc
Q psy8478          79 PSAVSKKRI   87 (88)
Q Consensus        79 p~~~~~~~~   87 (88)
                      |++.++.+.
T Consensus       249 pt~~~l~~~  257 (261)
T cd05148         249 PSFKALREE  257 (261)
T ss_pred             cCHHHHHHH
Confidence            999998764

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=99.57  E-value=8.1e-15  Score=79.65  Aligned_cols=84  Identities=18%  Similarity=0.379  Sum_probs=66.3

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCC---CCCCCCChHHHHHHHhhCcccC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGR---LNRPANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~l~~~~~~r   78 (88)
                      +.|++||.+....++.++|+|++|++++++++ |..||...+.......+..+..   ...+..+.+++..|+..+|.+|
T Consensus       164 ~~y~aPE~~~~~~~~~~~DiwslG~il~ell~-G~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  242 (323)
T cd05584         164 IEYMAPEILMRSGHGKAVDWWSLGALMYDMLT-GAPPFTAENRKKTIDKILKGKLNLPPYLTPEARDLLKKLLKRNPSSR  242 (323)
T ss_pred             ccccChhhccCCCCCCcceecccHHHHHHHhc-CCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHcccCHhHc
Confidence            56999999988778889999999999999999 9999988877777777655431   1223445678888999999999


Q ss_pred             C-----Chhhhhh
Q psy8478          79 P-----SAVSKKR   86 (88)
Q Consensus        79 p-----~~~~~~~   86 (88)
                      |     +++++.+
T Consensus       243 ~~~~~~~~~~l~~  255 (323)
T cd05584         243 LGAGPGDAAEVQS  255 (323)
T ss_pred             CCCCCCCHHHHhc
Confidence            9     6776643

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=99.57  E-value=1.3e-14  Score=78.67  Aligned_cols=79  Identities=20%  Similarity=0.390  Sum_probs=63.7

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCC----CCCChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNR----PANCSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~l~~~~~~   77 (88)
                      +.|++||.+.+..++.++|+|++|++++++++ |..||.+.+..+....+.... +..    +..+.+++.+|+..+|.+
T Consensus       160 ~~y~aPE~~~~~~~~~~~DvwslG~il~ell~-G~~Pf~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~ll~~~l~~~P~~  237 (316)
T cd05592         160 PDYIAPEILKGQKYNESVDWWSFGVLLYEMLI-GQSPFHGEDEDELFDSILNDR-PHFPRWISKEAKDCLSKLFERDPTK  237 (316)
T ss_pred             ccccCHHHHcCCCCCCcccchhHHHHHHHHHh-CCCCCCCCCHHHHHHHHHcCC-CCCCCCCCHHHHHHHHHHccCCHHH
Confidence            56899999988888899999999999999999 999998888777777665432 222    334567888889999999


Q ss_pred             CCChh
Q psy8478          78 APSAV   82 (88)
Q Consensus        78 rp~~~   82 (88)
                      ||++.
T Consensus       238 R~~~~  242 (316)
T cd05592         238 RLGVD  242 (316)
T ss_pred             cCCCh
Confidence            99865

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=99.57  E-value=4.6e-14  Score=75.33  Aligned_cols=85  Identities=36%  Similarity=0.634  Sum_probs=66.9

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCC----CChHHHHHHHhhCcccC
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA----NCSHLIRSRNRLTENKA   78 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~l~~~~~~r   78 (88)
                      .|++||.+....++.++|+|++|++++++++.|..||.+....++...+......+.+.    .+.+++.+|+..+|.+|
T Consensus       191 ~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~R  270 (283)
T cd05090         191 RWMPPEAIMYGKFSSDSDIWSFGVVLWEIFSFGLQPYYGFSNQEVIEMVRKRQLLPCSEDCPPRMYSLMTECWQEGPSRR  270 (283)
T ss_pred             eecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcccCcccC
Confidence            48999998877788899999999999999876888888777666777666554444333    34566778888899999


Q ss_pred             CChhhhhhc
Q psy8478          79 PSAVSKKRI   87 (88)
Q Consensus        79 p~~~~~~~~   87 (88)
                      |++.++.+.
T Consensus       271 p~~~~i~~~  279 (283)
T cd05090         271 PRFKDIHTR  279 (283)
T ss_pred             cCHHHHHHH
Confidence            999998653

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=99.57  E-value=3.6e-14  Score=75.18  Aligned_cols=85  Identities=39%  Similarity=0.781  Sum_probs=67.5

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCC----CCChHHHHHHHhhCcccC
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRP----ANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~l~~~~~~r   78 (88)
                      .|++||.+....++.++|+|++|++++++++.|..||.+....+....+..+.....+    ..+.+.+.+|+..+|++|
T Consensus       180 ~~~~pe~~~~~~~~~~~Dv~SlG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  259 (273)
T cd05035         180 KWIAIESLADRVYTSKSDVWAFGVTMWEIATRGQTPYPGVENHEIYDYLRHGNRLKQPEDCLDELYDLMYSCWRADPKDR  259 (273)
T ss_pred             cccCHhhcccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCcCCCHHHHHHHHHHcCCChhhC
Confidence            5889998877778889999999999999987688888877777777777655444333    345677778888999999


Q ss_pred             CChhhhhhc
Q psy8478          79 PSAVSKKRI   87 (88)
Q Consensus        79 p~~~~~~~~   87 (88)
                      |++.++.+.
T Consensus       260 p~~~e~~~~  268 (273)
T cd05035         260 PTFTKLREV  268 (273)
T ss_pred             cCHHHHHHH
Confidence            999998753

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=99.57  E-value=5.6e-15  Score=80.87  Aligned_cols=84  Identities=24%  Similarity=0.396  Sum_probs=67.6

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCC---CCCCCCChHHHHHHHhhCcccC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGR---LNRPANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~l~~~~~~r   78 (88)
                      +.|+|||.+.+..++.++|+|++|++++++++ |..||.+.+.......+..+..   ...+..+.+++.+++..+|.+|
T Consensus       192 ~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~-G~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~~~l~~dp~~R  270 (340)
T PTZ00426        192 PEYIAPEILLNVGHGKAADWWTLGIFIYEILV-GCPPFYANEPLLIYQKILEGIIYFPKFLDNNCKHLMKKLLSHDLTKR  270 (340)
T ss_pred             hhhcCHHHHhCCCCCccccccchhhHHHHHhc-CCCCCCCCCHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHcccCHHHc
Confidence            46999999988788889999999999999999 9999988887777777765532   2234456788899999999999


Q ss_pred             C-----Chhhhhh
Q psy8478          79 P-----SAVSKKR   86 (88)
Q Consensus        79 p-----~~~~~~~   86 (88)
                      +     +++++.+
T Consensus       271 ~~~~~~~~~~~~~  283 (340)
T PTZ00426        271 YGNLKKGAQNVKE  283 (340)
T ss_pred             CCCCCCCHHHHHc
Confidence            5     7777654

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=99.56  E-value=4.8e-14  Score=74.60  Aligned_cols=84  Identities=21%  Similarity=0.543  Sum_probs=64.3

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCC----CCCChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNR----PANCSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~l~~~~~~   77 (88)
                      ..|++||.+....++.++|+|++|++++++++ |..||...........+.....+..    +..+.+++.+|+..+|.+
T Consensus       176 ~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~  254 (267)
T cd06628         176 VFWMAPEVVKQTSYTRKADIWSLGCLVVEMLT-GKHPFPDCTQLQAIFKIGENASPEIPSNISSEAIDFLEKTFEIDHNK  254 (267)
T ss_pred             cCccChhHhccCCCCchhhhHHHHHHHHHHhh-CCCCCCCccHHHHHHHHhccCCCcCCcccCHHHHHHHHHHccCCchh
Confidence            35889998887778888999999999999999 9999987665544444443333333    344567788888888999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||++.++.+
T Consensus       255 Rp~~~~il~  263 (267)
T cd06628         255 RPTAAELLK  263 (267)
T ss_pred             CcCHHHHhh
Confidence            999999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=99.56  E-value=7.5e-15  Score=79.71  Aligned_cols=83  Identities=25%  Similarity=0.425  Sum_probs=67.3

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC---CCCCCChHHHHHHHhhCcccC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRL---NRPANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~l~~~~~~r   78 (88)
                      +.|++||.+....++.++|+|++|++++++++ |..||.+.+..+....+..+...   ..+..+.+++.+|+..+|.+|
T Consensus       160 ~~y~aPE~~~~~~~~~~~DvwslG~il~el~t-g~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~ll~~~L~~dp~~R  238 (321)
T cd05591         160 PDYIAPEILQELEYGPSVDWWALGVLMYEMMA-GQPPFEADNEDDLFESILHDDVLYPVWLSKEAVSILKAFMTKNPNKR  238 (321)
T ss_pred             ccccCHHHHcCCCCCCccceechhHHHHHHhc-CCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHhccCHHHc
Confidence            46899999988888899999999999999999 99999988888777777654321   234556788889999999999


Q ss_pred             C-------Chhhhh
Q psy8478          79 P-------SAVSKK   85 (88)
Q Consensus        79 p-------~~~~~~   85 (88)
                      +       +++++.
T Consensus       239 ~~~~~~~~~~~~~~  252 (321)
T cd05591         239 LGCVASQGGEDAIK  252 (321)
T ss_pred             CCCCCCCCCHHHHh
Confidence            9       666654

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=99.56  E-value=4.6e-14  Score=76.39  Aligned_cols=84  Identities=36%  Similarity=0.786  Sum_probs=67.3

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCC----CChHHHHHHHhhCcccC
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA----NCSHLIRSRNRLTENKA   78 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~l~~~~~~r   78 (88)
                      .|++||.+....++.++|+|++|++++++++.|..||.+....+....+..+.....+.    ...+++.+|+..+|.+|
T Consensus       201 ~y~aPE~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~R  280 (314)
T cd05099         201 KWMAPEALFDRVYTHQSDVWSFGILMWEIFTLGGSPYPGIPVEELFKLLREGHRMDKPSNCTHELYMLMRECWHAVPTQR  280 (314)
T ss_pred             cccCHHHHccCCcCccchhhHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCCcccC
Confidence            58999998877788899999999999998876788888777777777776654443333    34567778888899999


Q ss_pred             CChhhhhh
Q psy8478          79 PSAVSKKR   86 (88)
Q Consensus        79 p~~~~~~~   86 (88)
                      |++.++.+
T Consensus       281 ps~~~ll~  288 (314)
T cd05099         281 PTFKQLVE  288 (314)
T ss_pred             cCHHHHHH
Confidence            99999865

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=99.56  E-value=2e-14  Score=78.37  Aligned_cols=84  Identities=18%  Similarity=0.264  Sum_probs=61.7

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHH------------------------------
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYV------------------------------   51 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i------------------------------   51 (88)
                      ..|++||.+.+..++.++|+|++|++++++++ |..||......+....+                              
T Consensus       166 ~~y~aPE~~~~~~~~~~~DiwslG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (331)
T cd06649         166 RSYMSPERLQGTHYSVQSDIWSMGLSLVELAI-GRYPIPPPDAKELEAIFGRPVVDGEEGEPHSISPRPRPPGRPVSGHG  244 (331)
T ss_pred             cCcCCHhHhcCCCCCchHhHHHHHHHHHHHHh-CCCCCCCCCHHHHHHHhcccccccccCCccccCcccccccccccccc
Confidence            46899999988888899999999999999999 99998755443332111                              


Q ss_pred             ----------------HcCCCCC-----CCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          52 ----------------RGGGRLN-----RPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        52 ----------------~~~~~~~-----~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                                      .....+.     .+..+.+++.+|+..+|++||+++++.+
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~~P~~Rpt~~ell~  300 (331)
T cd06649         245 MDSRPAMAIFELLDYIVNEPPPKLPNGVFTPDFQEFVNKCLIKNPAERADLKMLMN  300 (331)
T ss_pred             cccccchhHHHHHHHHHhCCCcCCCCccccHHHHHHHHHHccCCcccCCCHHHHhc
Confidence                            1111111     1234567888999999999999999864

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>KOG4717|consensus

Probab=99.56  E-value=5.9e-15  Score=83.90  Aligned_cols=83  Identities=23%  Similarity=0.454  Sum_probs=71.4

Q ss_pred             CcccCcchhccCCCC-chhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC-CC--CCCCCChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFS-SQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG-RL--NRPANCSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~--~~~~~~~~~~~~~l~~~~~~   77 (88)
                      ..|-|||++.+..|. +.+|+|++|+++|.+.. |+.||+..+..+.+.+|..+. ..  ....+|.++|..||.++|.+
T Consensus       182 LAYSAPEILLGDsYDAPAVDiWSLGVILyMLVC-Gq~PFqeANDSETLTmImDCKYtvPshvS~eCrdLI~sMLvRdPkk  260 (864)
T KOG4717|consen  182 LAYSAPEILLGDSYDAPAVDIWSLGVILYMLVC-GQPPFQEANDSETLTMIMDCKYTVPSHVSKECRDLIQSMLVRDPKK  260 (864)
T ss_pred             hhccCchhhhcCccCCcchhhhHHHHHHHHHHh-CCCccccccchhhhhhhhcccccCchhhhHHHHHHHHHHHhcCchh
Confidence            468899999998886 57999999999999888 999999999999999997763 22  23467899999999999999


Q ss_pred             CCChhhhh
Q psy8478          78 APSAVSKK   85 (88)
Q Consensus        78 rp~~~~~~   85 (88)
                      |.++++|.
T Consensus       261 RAslEeI~  268 (864)
T KOG4717|consen  261 RASLEEIV  268 (864)
T ss_pred             hccHHHHh
Confidence            99999874

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=99.56  E-value=1.9e-14  Score=78.99  Aligned_cols=84  Identities=18%  Similarity=0.288  Sum_probs=61.6

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC---------------------CC---
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG---------------------RL---   57 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---------------------~~---   57 (88)
                      ..|++||.+.+..++.++|+|++|++++++++ |..||.+.+..+....+....                     .+   
T Consensus       182 ~~y~aPE~~~~~~~~~~~DiwslG~il~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (355)
T cd07874         182 RYYRAPEVILGMGYKENVDIWSVGCIMGEMVR-HKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYA  260 (355)
T ss_pred             CCccCHHHHcCCCCCchhhHHHHHHHHHHHHh-CCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhcHHHHHHHhcCCccc
Confidence            46899999988888899999999999999999 999998766433322211000                     00   


Q ss_pred             ---------------------CCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          58 ---------------------NRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        58 ---------------------~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                                           ..+..+.+++.+|+..+|.+|||+.++++
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~Rps~~ell~  310 (355)
T cd07874         261 GLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDEALQ  310 (355)
T ss_pred             cccchhhccccccccccccccccchHHHHHHHHHhcCCchhcCCHHHHhc
Confidence                                 00122357889999999999999999875

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=99.56  E-value=3.4e-14  Score=74.85  Aligned_cols=84  Identities=24%  Similarity=0.479  Sum_probs=66.6

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCC----CCChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRP----ANCSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~l~~~~~~   77 (88)
                      ..|++||.+....++.+.|+|++|++++++++ |..|+......+....+..+.....+    ..+.+++..|+..+|.+
T Consensus       174 ~~~~~pE~~~~~~~~~~~Dv~slG~il~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~p~~  252 (265)
T cd08217         174 PYYMSPEQLNHMSYDEKSDIWSLGCLIYELCA-LSPPFTARNQLQLASKIKEGKFRRIPYRYSSELNEVIKSMLNVDPDK  252 (265)
T ss_pred             CCccChhhhcCCCCCchhHHHHHHHHHHHHHH-CCCcccCcCHHHHHHHHhcCCCCCCccccCHHHHHHHHHHccCCccc
Confidence            45889999887778889999999999999999 99999877766666666655433333    34566777888889999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||++.++.+
T Consensus       253 Rp~~~~il~  261 (265)
T cd08217         253 RPSTEELLQ  261 (265)
T ss_pred             CCCHHHHhh
Confidence            999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=99.56  E-value=2.4e-14  Score=76.68  Aligned_cols=85  Identities=38%  Similarity=0.779  Sum_probs=67.7

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCC----CChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA----NCSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~l~~~~~~   77 (88)
                      ..|++||.+....++.++|+|++|++++++++.|..|+.+....+....+..+.....+.    .+.+++..|+..+|++
T Consensus       198 ~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~  277 (293)
T cd05053         198 VKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPVEELFKLLKEGYRMEKPQNCTQELYHLMRDCWHEVPSQ  277 (293)
T ss_pred             ccccCHHHhccCCcCcccceeehhhHHHHHhcCCCCCCCCCCHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcccCccc
Confidence            358999988777788899999999999998866888998877777777776655444333    4456777888889999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||++.++.+
T Consensus       278 Rps~~eil~  286 (293)
T cd05053         278 RPTFKQLVE  286 (293)
T ss_pred             CcCHHHHHH
Confidence            999999865

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=99.56  E-value=4.8e-14  Score=74.20  Aligned_cols=84  Identities=18%  Similarity=0.345  Sum_probs=66.5

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCC----CChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA----NCSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~l~~~~~~   77 (88)
                      ..|++||...+...+.++|+|++|++++++++ |..|+......+....+..+..+..+.    .+.+++.+|++.+|.+
T Consensus       165 ~~~~~pe~~~~~~~~~~~Dv~slG~i~~~l~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~  243 (256)
T cd08218         165 PYYLSPEICENRPYNNKSDIWALGCVLYEMCT-LKHAFEAGNMKNLVLKIIRGSYPPVSSHYSYDLRNLVSQLFKRNPRD  243 (256)
T ss_pred             ccccCHHHhCCCCCCCccchhHHHHHHHHHHc-CCCCccCCCHHHHHHHHhcCCCCCCcccCCHHHHHHHHHHhhCChhh
Confidence            35889999877777788999999999999999 999998777766666665554443333    3557788888899999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||++.++.+
T Consensus       244 Rp~~~~vl~  252 (256)
T cd08218         244 RPSVNSILE  252 (256)
T ss_pred             CcCHHHHhh
Confidence            999999865

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=99.56  E-value=2.7e-14  Score=74.98  Aligned_cols=84  Identities=35%  Similarity=0.668  Sum_probs=66.1

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCC----CCCChHHHHHHHhhCcccC
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNR----PANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~l~~~~~~r   78 (88)
                      .|++||.+.+..++.++|+|++|++++++++.|..||...........+........    +..+.+++.+|+..+|.+|
T Consensus       160 ~y~~PE~~~~~~~~~~~Di~slG~i~~~l~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  239 (251)
T cd05041         160 KWTAPEALNYGRYTSESDVWSYGILLWETFSLGDTPYPGMSNQQTRERIESGYRMPAPQLCPEEIYRLMLQCWAYDPENR  239 (251)
T ss_pred             ccCChHhhccCCCCcchhHHHHHHHHHHHHhccCCCCccCCHHHHHHHHhcCCCCCCCccCCHHHHHHHHHHhccChhhC
Confidence            489999988777888999999999999999767888877776666666654433333    3456677888999999999


Q ss_pred             CChhhhhh
Q psy8478          79 PSAVSKKR   86 (88)
Q Consensus        79 p~~~~~~~   86 (88)
                      |++.++++
T Consensus       240 p~~~ell~  247 (251)
T cd05041         240 PSFSEIYN  247 (251)
T ss_pred             cCHHHHHH
Confidence            99999875

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=99.56  E-value=1.8e-14  Score=78.14  Aligned_cols=81  Identities=21%  Similarity=0.409  Sum_probs=64.9

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCC----CCCChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNR----PANCSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~l~~~~~~   77 (88)
                      +.|++||.+.+..++.++|+|++|++++++++ |..||.+....+....+.... +..    +..+.+++.+|+..+|.+
T Consensus       160 ~~y~aPE~~~~~~~~~~~DiwslGvil~el~~-g~~Pf~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~~l~~dP~~  237 (316)
T cd05620         160 PDYIAPEILQGLKYTFSVDWWSFGVLLYEMLI-GQSPFHGDDEDELFESIRVDT-PHYPRWITKESKDILEKLFERDPTR  237 (316)
T ss_pred             cCccCHHHHcCCCCCcccchhhhHHHHHHHHh-CCCCCCCCCHHHHHHHHHhCC-CCCCCCCCHHHHHHHHHHccCCHHH
Confidence            46899999988888899999999999999999 999998877777766665432 222    334567888999999999


Q ss_pred             CCChh-hh
Q psy8478          78 APSAV-SK   84 (88)
Q Consensus        78 rp~~~-~~   84 (88)
                      |+++. ++
T Consensus       238 R~~~~~~~  245 (316)
T cd05620         238 RLGVVGNI  245 (316)
T ss_pred             cCCChHHH
Confidence            99974 44

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=99.56  E-value=8.1e-15  Score=79.63  Aligned_cols=80  Identities=21%  Similarity=0.431  Sum_probs=65.9

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC---CCCCCCCChHHHHHHHhhCcccC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG---RLNRPANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~~~~~~~~~~l~~~~~~r   78 (88)
                      +.|++||.+....++.++|+|++|++++++++ |..||...+..+....+..+.   +...+..+.+++.+++..+|.+|
T Consensus       160 ~~y~aPE~~~~~~~~~~~DvwslG~il~ell~-g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  238 (323)
T cd05575         160 PEYLAPEVLRKQPYDRTVDWWCLGAVLYEMLY-GLPPFYSRDTAEMYDNILNKPLRLKPNISVSARHLLEGLLQKDRTKR  238 (323)
T ss_pred             hhhcChhhhcCCCCCccccccccchhhhhhhc-CCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHhhcCHHhC
Confidence            46899999988888889999999999999999 999998887777776665442   22345567789999999999999


Q ss_pred             CChh
Q psy8478          79 PSAV   82 (88)
Q Consensus        79 p~~~   82 (88)
                      |++.
T Consensus       239 ~~~~  242 (323)
T cd05575         239 LGAK  242 (323)
T ss_pred             CCCC
Confidence            9984

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=99.56  E-value=3.7e-14  Score=75.29  Aligned_cols=84  Identities=38%  Similarity=0.654  Sum_probs=66.0

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCC----CCChHHHHHHHhhCcccC
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRP----ANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~l~~~~~~r   78 (88)
                      .|++||.+....++.+.|+|++|++++++++.|..||.+....+....+..+.....+    ....+++.+|+..+|.+|
T Consensus       176 ~y~apE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  255 (270)
T cd05047         176 RWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYRLEKPLNCDDEVYDLMRQCWREKPYER  255 (270)
T ss_pred             ccCChHHHccCCCCchhhHHHHHHHHHHHHcCCCCCccccCHHHHHHHHhCCCCCCCCCcCCHHHHHHHHHHcccChhhC
Confidence            4899998877778889999999999999986588899877766666666555443333    345567788888899999


Q ss_pred             CChhhhhh
Q psy8478          79 PSAVSKKR   86 (88)
Q Consensus        79 p~~~~~~~   86 (88)
                      |++.++.+
T Consensus       256 ps~~~il~  263 (270)
T cd05047         256 PSFAQILV  263 (270)
T ss_pred             CCHHHHHH
Confidence            99999865

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=99.56  E-value=7e-14  Score=75.47  Aligned_cols=85  Identities=35%  Similarity=0.778  Sum_probs=66.2

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCC----CChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA----NCSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~l~~~~~~   77 (88)
                      +.|++||.+.+..++.++|+|++|++++++++.|..|+.+....+....+..+.....+.    .+.+++.+|+..+|..
T Consensus       206 ~~y~aPE~~~~~~~~~~~DvwslG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~  285 (307)
T cd05098         206 VKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQ  285 (307)
T ss_pred             cceeChHHhccCCCCcHHHHHHHHHHHHHHHcCCCCCCCcCCHHHHHHHHHcCCCCCCCCcCCHHHHHHHHHHcccChhh
Confidence            368999998877788899999999999999875778887777766666666554444443    3455677788888999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||++.++.+
T Consensus       286 Rps~~evl~  294 (307)
T cd05098         286 RPTFKQLVE  294 (307)
T ss_pred             CcCHHHHHH
Confidence            999999864

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=99.55  E-value=7.6e-14  Score=75.63  Aligned_cols=84  Identities=26%  Similarity=0.591  Sum_probs=65.6

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCC----ChHHHHHHHhhCcccC
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN----CSHLIRSRNRLTENKA   78 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~l~~~~~~r   78 (88)
                      .|++||.+....++.++|+|++|++++++++.|..|+.+....+....+..+...+.+..    +...+..|+..+|.+|
T Consensus       176 ~y~apE~~~~~~~~~~~Di~slGv~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~R  255 (316)
T cd05108         176 KWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPICTIDVYMIMVKCWMIDADSR  255 (316)
T ss_pred             eecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHccCChhhC
Confidence            589999998888889999999999999988668899987777666655555544444433    4456677888889999


Q ss_pred             CChhhhhh
Q psy8478          79 PSAVSKKR   86 (88)
Q Consensus        79 p~~~~~~~   86 (88)
                      |++.++.+
T Consensus       256 ps~~~l~~  263 (316)
T cd05108         256 PKFRELII  263 (316)
T ss_pred             cCHHHHHH
Confidence            99998864

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=99.55  E-value=4.6e-14  Score=75.60  Aligned_cols=84  Identities=37%  Similarity=0.772  Sum_probs=67.2

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCC----CChHHHHHHHhhCcccC
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA----NCSHLIRSRNRLTENKA   78 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~l~~~~~~r   78 (88)
                      .|++||.+....++.+.|+|++|++++++++.|..|+.+....+....+..+.....+.    .+.+++..|+..+|.+|
T Consensus       194 ~y~apE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~cl~~~P~~R  273 (290)
T cd05045         194 KWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIAPERLFNLLKTGYRMERPENCSEEMYNLMLTCWKQEPDKR  273 (290)
T ss_pred             cccCHHHHccCCcchHhHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHccCCcccC
Confidence            58899988777788899999999999999876888998877777777766554444333    45567778888999999


Q ss_pred             CChhhhhh
Q psy8478          79 PSAVSKKR   86 (88)
Q Consensus        79 p~~~~~~~   86 (88)
                      |++.++.+
T Consensus       274 p~~~~i~~  281 (290)
T cd05045         274 PTFADISK  281 (290)
T ss_pred             CCHHHHHH
Confidence            99999865

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=99.55  E-value=4e-14  Score=75.40  Aligned_cols=84  Identities=39%  Similarity=0.706  Sum_probs=66.5

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCC----CCChHHHHHHHhhCcccC
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRP----ANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~l~~~~~~r   78 (88)
                      .|++||.+....++.++|+|++|++++++++.|..||...+..+....+..+.....+    ..+.+.+..|+..+|+.|
T Consensus       184 ~y~apE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  263 (280)
T cd05043         184 KWMALESLVNKEYSSASDVWSFGVLLWELMTLGQTPYVEIDPFEMAAYLKDGYRLAQPINCPDELFAVMACCWALDPEER  263 (280)
T ss_pred             hccCHHHHhcCCCCchhhHHHhHHHHHHHhcCCCCCcCcCCHHHHHHHHHcCCCCCCCCcCCHHHHHHHHHHcCCChhhC
Confidence            5899999887778889999999999999987688899877777766666655444333    345567777888889999


Q ss_pred             CChhhhhh
Q psy8478          79 PSAVSKKR   86 (88)
Q Consensus        79 p~~~~~~~   86 (88)
                      |++.++.+
T Consensus       264 ps~~~~~~  271 (280)
T cd05043         264 PSFSQLVQ  271 (280)
T ss_pred             CCHHHHHH
Confidence            99999865

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=99.55  E-value=9.8e-15  Score=79.53  Aligned_cols=77  Identities=23%  Similarity=0.458  Sum_probs=63.3

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCC----CCChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRP----ANCSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~l~~~~~~   77 (88)
                      +.|++||.+.+..++.++|+|++|++++++++ |..||.+....+....+..+. ...|    ..+.+++.+||..+|.+
T Consensus       179 ~~y~aPE~~~~~~~~~~~DiwslG~il~ellt-g~~pf~~~~~~~~~~~i~~~~-~~~p~~~~~~~~~li~~~L~~dP~~  256 (329)
T PTZ00263        179 PEYLAPEVIQSKGHGKAVDWWTMGVLLYEFIA-GYPPFFDDTPFRIYEKILAGR-LKFPNWFDGRARDLVKGLLQTDHTK  256 (329)
T ss_pred             hhhcCHHHHcCCCCCCcceeechHHHHHHHHc-CCCCCCCCCHHHHHHHHhcCC-cCCCCCCCHHHHHHHHHHhhcCHHH
Confidence            46899999988888889999999999999999 999998877777777776553 2223    34567888999999999


Q ss_pred             CCC
Q psy8478          78 APS   80 (88)
Q Consensus        78 rp~   80 (88)
                      |++
T Consensus       257 R~~  259 (329)
T PTZ00263        257 RLG  259 (329)
T ss_pred             cCC
Confidence            987

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.55  E-value=4.1e-14  Score=74.67  Aligned_cols=83  Identities=20%  Similarity=0.426  Sum_probs=63.3

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHc-CCCCCCC----CCChHHHHHHHhhCccc
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRG-GGRLNRP----ANCSHLIRSRNRLTENK   77 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~----~~~~~~~~~~l~~~~~~   77 (88)
                      .|++||.+.+..++.+.|+|++|++++++++ |..||...........+.. ......+    ..+.+++.+|+..+|.+
T Consensus       172 ~y~aPE~~~~~~~~~~~Di~slG~il~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~  250 (263)
T cd06625         172 YWMSPEVISGEGYGRKADVWSVGCTVVEMLT-EKPPWAEFEAMAAIFKIATQPTNPQLPSHVSPDARNFLRRTFVENAKK  250 (263)
T ss_pred             cccCcceeccCCCCchhhhHHHHHHHHHHHh-CCCCccccchHHHHHHHhccCCCCCCCccCCHHHHHHHHHHhhcCccc
Confidence            5899999988778889999999999999999 9999876655444433332 2222233    34567888888889999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||++.++.+
T Consensus       251 Rpt~~~ll~  259 (263)
T cd06625         251 RPSAEELLR  259 (263)
T ss_pred             CCCHHHHhh
Confidence            999999875

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=99.55  E-value=6.8e-14  Score=73.56  Aligned_cols=84  Identities=21%  Similarity=0.334  Sum_probs=65.5

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCC----CCCChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNR----PANCSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~l~~~~~~   77 (88)
                      ..|++||.+....++.+.|+|++|++++++++ |..||...+.......+..+...+.    +..+.+++.+|+..+|.+
T Consensus       165 ~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~  243 (256)
T cd08220         165 PCYISPELCEGKPYNQKSDIWALGCVLYELAS-LKRAFEAANLPALVLKIMSGTFAPISDRYSPDLRQLILSMLNLDPSK  243 (256)
T ss_pred             CcccCchhccCCCCCcccchHHHHHHHHHHHh-CCCCcccCchHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHccCChhh
Confidence            36899999887777889999999999999999 8889887766655555544433332    344667888889999999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||+++++.+
T Consensus       244 Rpt~~~ll~  252 (256)
T cd08220         244 RPQLSQIMA  252 (256)
T ss_pred             CCCHHHHhh
Confidence            999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=99.55  E-value=4.6e-14  Score=74.77  Aligned_cols=84  Identities=17%  Similarity=0.329  Sum_probs=65.8

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCC-----CCCCChHHHHHHHhhCcc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLN-----RPANCSHLIRSRNRLTEN   76 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~~~~l~~~~~   76 (88)
                      ..|++||.+....++.++|+|++|++++++++ |..||...........+..+...+     .+..+.+++.+|+..+|.
T Consensus       177 ~~~~~Pe~~~~~~~~~~~Dv~slG~ll~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~  255 (269)
T cd08528         177 ILYSCPEIVKNEPYGEKADVWAFGCILYQMCT-LQPPFYSTNMLSLATKIVEAVYEPLPEGMYSEDVTDVITSCLTPDAE  255 (269)
T ss_pred             ccCcChhhhcCCCCchHHHHHHHHHHHHHHHh-CCCcccccCHHHHHHHHhhccCCcCCcccCCHHHHHHHHHHCCCCCc
Confidence            35889999987778889999999999999999 999998776665555554443222     233566788889999999


Q ss_pred             cCCChhhhhh
Q psy8478          77 KAPSAVSKKR   86 (88)
Q Consensus        77 ~rp~~~~~~~   86 (88)
                      +||++.++..
T Consensus       256 ~Rp~~~e~~~  265 (269)
T cd08528         256 ARPDIIQVSA  265 (269)
T ss_pred             cCCCHHHHHH
Confidence            9999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=99.55  E-value=1e-14  Score=79.42  Aligned_cols=84  Identities=23%  Similarity=0.386  Sum_probs=65.5

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCC---CCCCCCChHHHHHHHhhCcccC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGR---LNRPANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~l~~~~~~r   78 (88)
                      +.|++||.+....++.++|+|++|++++++++ |..||...+..+....+.....   ...+..+.+++.+|+..+|.+|
T Consensus       159 ~~y~aPE~~~~~~~~~~~DiwslGvil~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~li~~~L~~dP~~R  237 (328)
T cd05593         159 PEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMC-GRLPFYNQDHEKLFELILMEDIKFPRTLSADAKSLLSGLLIKDPNKR  237 (328)
T ss_pred             cCccChhhhcCCCCCccCCccccchHHHHHhh-CCCCCCCCCHHHHHHHhccCCccCCCCCCHHHHHHHHHHcCCCHHHc
Confidence            46899999988888899999999999999999 9999987777666666543321   1233456678888899999999


Q ss_pred             C-----Chhhhhh
Q psy8478          79 P-----SAVSKKR   86 (88)
Q Consensus        79 p-----~~~~~~~   86 (88)
                      +     ++.++.+
T Consensus       238 ~~~~~~~~~~il~  250 (328)
T cd05593         238 LGGGPDDAKEIMR  250 (328)
T ss_pred             CCCCCCCHHHHhc
Confidence            7     7777653

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=99.55  E-value=8.7e-14  Score=73.12  Aligned_cols=86  Identities=45%  Similarity=0.838  Sum_probs=68.2

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCC----CChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA----NCSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~l~~~~~~   77 (88)
                      ..|++||......++.+.|+|++|+++++++..|..|+...........+..+.....+.    .+.+.+.+|+..+|.+
T Consensus       168 ~~y~~Pe~~~~~~~~~~~Di~slG~i~~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~  247 (258)
T smart00219      168 IRWMAPESLKDGKFTSKSDVWSFGVLLWEIFTLGESPYPGMSNEEVLEYLKKGYRLPKPENCPPEIYKLMLQCWAEDPED  247 (258)
T ss_pred             ccccChHHhccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHCcCChhh
Confidence            468999988777788899999999999999876788888777777777776555443333    3456777888899999


Q ss_pred             CCChhhhhhc
Q psy8478          78 APSAVSKKRI   87 (88)
Q Consensus        78 rp~~~~~~~~   87 (88)
                      ||++.++++.
T Consensus       248 Rpt~~~ll~~  257 (258)
T smart00219      248 RPTFSELVEI  257 (258)
T ss_pred             CcCHHHHHhh
Confidence            9999999864

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=99.55  E-value=9.4e-14  Score=73.69  Aligned_cols=85  Identities=36%  Similarity=0.641  Sum_probs=66.6

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCC----CCCChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNR----PANCSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~l~~~~~~   77 (88)
                      ..|++||.+....++.++|+|++|++++++++.|..||......+....+..+.+.+.    +..+.+++.+|+..+|.+
T Consensus       172 ~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~  251 (270)
T cd05056         172 IKWMAPESINFRRFTSASDVWMFGVCMWEILMLGVKPFQGVKNNDVIGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSK  251 (270)
T ss_pred             ccccChhhhccCCCCchhhhHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcCCChhh
Confidence            3589999887777888999999999999988658899987777666666665544433    344566777888889999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||++.++.+
T Consensus       252 Rpt~~~~~~  260 (270)
T cd05056         252 RPRFTELKA  260 (270)
T ss_pred             CcCHHHHHH
Confidence            999998764

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=99.55  E-value=7.6e-14  Score=73.54  Aligned_cols=84  Identities=37%  Similarity=0.720  Sum_probs=66.4

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCC----CCChHHHHHHHhhCcccC
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRP----ANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~l~~~~~~r   78 (88)
                      .|++||.+....++.+.|+|++|++++++++.|..|+......+....+..+.....+    ....+++.+|+..+|.+|
T Consensus       164 ~y~aPE~~~~~~~~~~~Dv~slG~i~~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  243 (256)
T cd05082         164 KWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKMDAPDGCPPVVYDVMKQCWHLDAATR  243 (256)
T ss_pred             eecCHHHHccCCCCchhhhHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHhcCChhhC
Confidence            5899999887778889999999999999986588898877777777766655444333    345567778888899999


Q ss_pred             CChhhhhh
Q psy8478          79 PSAVSKKR   86 (88)
Q Consensus        79 p~~~~~~~   86 (88)
                      |++.++.+
T Consensus       244 pt~~~l~~  251 (256)
T cd05082         244 PSFLQLRE  251 (256)
T ss_pred             cCHHHHHH
Confidence            99999865

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>KOG0574|consensus

Probab=99.55  E-value=4.7e-16  Score=83.48  Aligned_cols=85  Identities=20%  Similarity=0.412  Sum_probs=69.3

Q ss_pred             CCcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCC--CCC----CChHHHHHHHhhC
Q psy8478           1 MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLN--RPA----NCSHLIRSRNRLT   74 (88)
Q Consensus         1 ~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~----~~~~~~~~~l~~~   74 (88)
                      ++.||+||++..-.|+..+|+|++|+...++.. |++||....+.+.+.+|-...++.  .|+    ++.+++++||...
T Consensus       192 TPFWMAPEVI~EIGY~~~ADIWSLGITaIEMAE-G~PPYsDIHPMRAIFMIPT~PPPTF~KPE~WS~~F~DFi~~CLiK~  270 (502)
T KOG0574|consen  192 TPFWMAPEVIEEIGYDTKADIWSLGITAIEMAE-GRPPYSDIHPMRAIFMIPTKPPPTFKKPEEWSSEFNDFIRSCLIKK  270 (502)
T ss_pred             CcccccHHHHHHhccchhhhHhhhcchhhhhhc-CCCCcccccccceeEeccCCCCCCCCChHhhhhHHHHHHHHHhcCC
Confidence            478999999998899999999999999999999 999999888888888886554432  233    4556777888888


Q ss_pred             cccCCChhhhhh
Q psy8478          75 ENKAPSAVSKKR   86 (88)
Q Consensus        75 ~~~rp~~~~~~~   86 (88)
                      |+.|-||.++.+
T Consensus       271 PE~R~TA~~L~~  282 (502)
T KOG0574|consen  271 PEERKTALRLCE  282 (502)
T ss_pred             HHHHHHHHHHhh
Confidence            888888877654

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=99.55  E-value=2.2e-14  Score=78.00  Aligned_cols=83  Identities=19%  Similarity=0.381  Sum_probs=64.1

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC-C--CCCCCCChHHHHHHHhhCcccC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG-R--LNRPANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~--~~~~~~~~~~~~~~l~~~~~~r   78 (88)
                      +.|++||.+....++.++|+|++|++++++++ |..||...+..+....+.... .  ...+..+.+++..|+..+|.+|
T Consensus       159 ~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~li~~~L~~dP~~R  237 (323)
T cd05595         159 PEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMC-GRLPFYNQDHERLFELILMEEIRFPRTLSPEAKSLLAGLLKKDPKQR  237 (323)
T ss_pred             cCcCCcccccCCCCCchhchhhhHHHHHHHHh-CCCCCCCCCHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHccCCHHHh
Confidence            57999999988888899999999999999999 999998777766666654332 1  1234455677888888899999


Q ss_pred             C-----Chhhhh
Q psy8478          79 P-----SAVSKK   85 (88)
Q Consensus        79 p-----~~~~~~   85 (88)
                      +     ++.++.
T Consensus       238 ~~~~~~~~~~~l  249 (323)
T cd05595         238 LGGGPSDAKEVM  249 (323)
T ss_pred             CCCCCCCHHHHH
Confidence            8     666654

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=99.55  E-value=7.8e-15  Score=79.76  Aligned_cols=81  Identities=21%  Similarity=0.427  Sum_probs=66.0

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC---CCCCCCCChHHHHHHHhhCcccC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG---RLNRPANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~~~~~~~~~~l~~~~~~r   78 (88)
                      +.|++||.+.+..++.++|+|++|++++++++ |..||.+.+..+....+....   ....+..+.+++.++++.+|.+|
T Consensus       160 ~~y~aPE~~~~~~~~~~~DiwslG~il~el~~-g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  238 (325)
T cd05602         160 PEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLY-GLPPFYSRNTAEMYDNILNKPLQLKPNITNSARHLLEGLLQKDRTKR  238 (325)
T ss_pred             ccccCHHHHcCCCCCCccccccccHHHHHHhc-CCCCCCCCCHHHHHHHHHhCCcCCCCCCCHHHHHHHHHHcccCHHHC
Confidence            57999999988888899999999999999999 999998887777766665432   22344566788899999999999


Q ss_pred             CChhh
Q psy8478          79 PSAVS   83 (88)
Q Consensus        79 p~~~~   83 (88)
                      +++.+
T Consensus       239 ~~~~~  243 (325)
T cd05602         239 LGAKD  243 (325)
T ss_pred             CCCCC
Confidence            99764

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=99.55  E-value=4e-14  Score=83.20  Aligned_cols=84  Identities=23%  Similarity=0.377  Sum_probs=67.2

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC-CC-C----CCCCChHHHHHHHhhCc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG-RL-N----RPANCSHLIRSRNRLTE   75 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~-~----~~~~~~~~~~~~l~~~~   75 (88)
                      +.|++||.+.+..++.++|+|++|++++++++ |..||.+....+....+.... .. .    .+..+.+++..|+..+|
T Consensus       544 ~~Y~APE~l~~~~~~~~~DiwSlG~il~Ellt-G~~pf~~~~~~~~~~~il~~~~~~p~~~~~~~~~~~~~l~~lL~~dP  622 (669)
T cd05610         544 PDYLAPELLLGKPHGPAVDWWALGVCLFEFLT-GIPPFNDETPQQVFQNILNRDIPWPEGEEKLSVNAQNAIEILLTMDP  622 (669)
T ss_pred             ccccCHHHcCCCCCCcHHHHHHHHHHHHHHHH-CCCCCCCCCHHHHHHHHHhcCCCCCcccccCCHHHHHHHHHHcccCh
Confidence            57999999988888999999999999999999 999998888777777765432 11 1    12234457788999999


Q ss_pred             ccCCChhhhhh
Q psy8478          76 NKAPSAVSKKR   86 (88)
Q Consensus        76 ~~rp~~~~~~~   86 (88)
                      .+||++.++.+
T Consensus       623 ~~R~ta~e~l~  633 (669)
T cd05610         623 TKRAGLKELKQ  633 (669)
T ss_pred             hHCcCHHHHHh
Confidence            99999999865

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=99.54  E-value=4.3e-14  Score=74.91  Aligned_cols=85  Identities=36%  Similarity=0.677  Sum_probs=67.8

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCC----CCCChHHHHHHHhhCcccC
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNR----PANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~l~~~~~~r   78 (88)
                      .|++||.+....++.+.|+|++|+++++++..|..||......+....+.++.+.+.    +..+.+++.+|+..+|.+|
T Consensus       174 ~y~~pe~~~~~~~~~~~Dv~slG~~l~ell~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  253 (267)
T cd05066         174 RWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWEMSNQDVIKAIEEGYRLPAPMDCPAALHQLMLDCWQKDRNER  253 (267)
T ss_pred             eecCHhHhccCccCchhhhHHHHHHHHHHhcCCCCCcccCCHHHHHHHHhCCCcCCCCCCCCHHHHHHHHHHcccCchhC
Confidence            588999988777888999999999999977558889987776667777766554433    3355678888999999999


Q ss_pred             CChhhhhhc
Q psy8478          79 PSAVSKKRI   87 (88)
Q Consensus        79 p~~~~~~~~   87 (88)
                      |++.++.+.
T Consensus       254 p~~~~i~~~  262 (267)
T cd05066         254 PKFEQIVSI  262 (267)
T ss_pred             CCHHHHHHH
Confidence            999998764

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=99.54  E-value=3.4e-14  Score=77.39  Aligned_cols=84  Identities=18%  Similarity=0.349  Sum_probs=60.2

Q ss_pred             CcccCcchhcc--CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHc--------------------------
Q psy8478           2 TRWMAPECLVD--GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRG--------------------------   53 (88)
Q Consensus         2 ~~~~~pe~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--------------------------   53 (88)
                      ..|++||.+..  ..++.++|+|++|++++++++ |..||.+.........+..                          
T Consensus       170 ~~y~aPE~~~~~~~~~~~~~DvwSlGvvl~el~t-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  248 (338)
T cd07859         170 RWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLT-GKPLFPGKNVVHQLDLITDLLGTPSPETISRVRNEKARRYLSSMR  248 (338)
T ss_pred             CCcCCHHHHhccccccCchhHHHHHHHHHHHHHc-CCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhhhhhHHHHHHhhc
Confidence            45899998865  467889999999999999999 9999976554332221110                          


Q ss_pred             -CCC-------CCCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          54 -GGR-------LNRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        54 -~~~-------~~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                       ...       +..+..+.+++.+|+..+|.+||+++++++
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~e~l~  289 (338)
T cd07859         249 KKQPVPFSQKFPNADPLALRLLERLLAFDPKDRPTAEEALA  289 (338)
T ss_pred             ccCCCchHHhcCCCChHHHHHHHHHcCcCcccCCCHHHHhc
Confidence             000       012334567889999999999999999864

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=99.54  E-value=5.7e-14  Score=75.59  Aligned_cols=84  Identities=21%  Similarity=0.464  Sum_probs=63.3

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCC--CCC----CCCChHHHHHHHhhCc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGR--LNR----PANCSHLIRSRNRLTE   75 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~----~~~~~~~~~~~l~~~~   75 (88)
                      ..|++||.+....++.++|+|++|++++++++ |..||......+....+.....  ...    +..+.+++.+|+..+|
T Consensus       179 ~~y~aPE~~~~~~~~~~~Dv~slGvil~~llt-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp  257 (296)
T cd06655         179 PYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVE-GEPPYLNENPLRALYLIATNGTPELQNPEKLSPIFRDFLNRCLEMDV  257 (296)
T ss_pred             ccccCcchhcCCCCCchhhHHHHHHHHHHHHh-CCCCCCCCCHHHHHHHHHhcCCcccCCcccCCHHHHHHHHHHhhcCh
Confidence            36899999887778889999999999999999 9999987765544444432221  112    2335567788999999


Q ss_pred             ccCCChhhhhh
Q psy8478          76 NKAPSAVSKKR   86 (88)
Q Consensus        76 ~~rp~~~~~~~   86 (88)
                      .+||++.++++
T Consensus       258 ~~Rpt~~~il~  268 (296)
T cd06655         258 EKRGSAKELLQ  268 (296)
T ss_pred             hhCCCHHHHhh
Confidence            99999999864

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.54  E-value=7.9e-14  Score=73.62  Aligned_cols=86  Identities=28%  Similarity=0.492  Sum_probs=61.3

Q ss_pred             CcccCcchhccC-CCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCC--CCCCChHHHHHHHhhCcccC
Q psy8478           2 TRWMAPECLVDG-LFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLN--RPANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         2 ~~~~~pe~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~l~~~~~~r   78 (88)
                      +.|++||.+... .++.++|+|++|+++++++..+..|+..................+  ....+.+++.+|++.+|.+|
T Consensus       168 ~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  247 (258)
T cd05078         168 IPWVPPECIENPQNLSLAADKWSFGTTLWEIFSGGDKPLSALDSQKKLQFYEDRHQLPAPKWTELANLINQCMDYEPDFR  247 (258)
T ss_pred             CCccCchhccCCCCCCchhhHHHHHHHHHHHHcCCCCChhhccHHHHHHHHHccccCCCCCcHHHHHHHHHHhccChhhC
Confidence            468999988764 467889999999999999993356766555444333322222222  12346678899999999999


Q ss_pred             CChhhhhhc
Q psy8478          79 PSAVSKKRI   87 (88)
Q Consensus        79 p~~~~~~~~   87 (88)
                      |+++++.+.
T Consensus       248 ps~~~il~~  256 (258)
T cd05078         248 PSFRAIIRD  256 (258)
T ss_pred             CCHHHHHHh
Confidence            999999764

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=99.54  E-value=6e-14  Score=74.23  Aligned_cols=85  Identities=19%  Similarity=0.334  Sum_probs=63.3

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCC--HHHHHHHHHcCCCCCCC-----CCChHHHHHHHhhC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPART--NVDVLHYVRGGGRLNRP-----ANCSHLIRSRNRLT   74 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~-----~~~~~~~~~~l~~~   74 (88)
                      +.|++||.+....++.+.|+|++|++++++++ |..|+....  ..+....+.....++.+     ..+.+++.+|+..+
T Consensus       170 ~~~~aPE~~~~~~~~~~~Di~slG~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~  248 (267)
T cd08228         170 PYYMSPERIHENGYNFKSDIWSLGCLLYEMAA-LQSPFYGDKMNLFSLCQKIEQCDYPPLPTEHYSEKLRELVSMCIYPD  248 (267)
T ss_pred             ccccChhhhccCCCCchhhHHHHHHHHHHHhc-CCCCCccccccHHHHHHHHhcCCCCCCChhhcCHHHHHHHHHHCCCC
Confidence            46899999887778889999999999999999 888875432  34455555443333222     33567778888889


Q ss_pred             cccCCChhhhhhc
Q psy8478          75 ENKAPSAVSKKRI   87 (88)
Q Consensus        75 ~~~rp~~~~~~~~   87 (88)
                      |.+||++.++.++
T Consensus       249 p~~Rp~~~~vl~~  261 (267)
T cd08228         249 PDQRPDIGYVHQI  261 (267)
T ss_pred             cccCcCHHHHHHH
Confidence            9999999999764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=99.54  E-value=9.1e-14  Score=74.43  Aligned_cols=85  Identities=42%  Similarity=0.852  Sum_probs=67.0

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCC----CCChHHHHHHHhhCcccC
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRP----ANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~l~~~~~~r   78 (88)
                      .|++||.+....++.++|+|++|++++++++.+..|+.+....+....+..+.....+    ..+.+++..|+..+|.+|
T Consensus       186 ~y~~pE~~~~~~~~~~~DvwslG~~l~el~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  265 (288)
T cd05061         186 RWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFVMDGGYLDQPDNCPERVTDLMRMCWQFNPKMR  265 (288)
T ss_pred             cccCHHHhccCCCChHhHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCChhHC
Confidence            4899999887778889999999999999987577888877777777666555433333    345678888899999999


Q ss_pred             CChhhhhhc
Q psy8478          79 PSAVSKKRI   87 (88)
Q Consensus        79 p~~~~~~~~   87 (88)
                      |++.++.+.
T Consensus       266 ps~~~ll~~  274 (288)
T cd05061         266 PTFLEIVNL  274 (288)
T ss_pred             cCHHHHHHH
Confidence            999998753

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=99.54  E-value=4e-14  Score=76.97  Aligned_cols=78  Identities=21%  Similarity=0.438  Sum_probs=63.4

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCC----CCCChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNR----PANCSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~l~~~~~~   77 (88)
                      +.|++||.+.+..++.++|+|++|++++++++ |..||.+....+....+.... ...    +..+.+++..|+..+|.+
T Consensus       165 ~~y~aPE~~~~~~~~~~~DiwslGvil~ellt-G~~pf~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~li~~~l~~~P~~  242 (324)
T cd05587         165 PDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLA-GQPPFDGEDEDELFQSIMEHN-VSYPKSLSKEAVSICKGLLTKHPAK  242 (324)
T ss_pred             ccccChhhhcCCCCCcccchhhhHHHHHHHHh-CCCCCCCCCHHHHHHHHHcCC-CCCCCCCCHHHHHHHHHHhhcCHHH
Confidence            46899999988888889999999999999999 999998888777777776542 222    334556888899999999


Q ss_pred             CCCh
Q psy8478          78 APSA   81 (88)
Q Consensus        78 rp~~   81 (88)
                      |++.
T Consensus       243 R~~~  246 (324)
T cd05587         243 RLGC  246 (324)
T ss_pred             cCCC
Confidence            9976

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>KOG0194|consensus

Probab=99.54  E-value=4.3e-15  Score=83.62  Aligned_cols=85  Identities=36%  Similarity=0.737  Sum_probs=72.4

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHH-HcCCCCCCCCCChHHHHH----HHhhCcc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYV-RGGGRLNRPANCSHLIRS----RNRLTEN   76 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~----~l~~~~~   76 (88)
                      ++|+|||.+....|+.+.|+|++|+++||+...|..||.+....++...| ..+++.+.|...+.++..    |...+++
T Consensus       326 irWLAPEtl~~~~~s~kTDV~sfGV~~~Eif~~g~~Py~g~~~~~v~~kI~~~~~r~~~~~~~p~~~~~~~~~c~~~~p~  405 (474)
T KOG0194|consen  326 IRWLAPETLNTGIFSFKTDVWSFGVLLWEIFENGAEPYPGMKNYEVKAKIVKNGYRMPIPSKTPKELAKVMKQCWKKDPE  405 (474)
T ss_pred             ceecChhhhccCccccccchhheeeeEEeeeccCCCCCCCCCHHHHHHHHHhcCccCCCCCCCHHHHHHHHHHhccCChh
Confidence            58999999999999999999999999999998788899999999999999 667777777777766554    5556678


Q ss_pred             cCCChhhhhh
Q psy8478          77 KAPSAVSKKR   86 (88)
Q Consensus        77 ~rp~~~~~~~   86 (88)
                      .||++.++.+
T Consensus       406 ~R~tm~~i~~  415 (474)
T KOG0194|consen  406 DRPTMSTIKK  415 (474)
T ss_pred             hccCHHHHHH
Confidence            8999988765

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=99.54  E-value=2.3e-14  Score=77.89  Aligned_cols=79  Identities=20%  Similarity=0.413  Sum_probs=63.7

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCC---CCCCCCChHHHHHHHhhCcccC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGR---LNRPANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~l~~~~~~r   78 (88)
                      +.|++||.+....++.++|+|++|++++++++ |..||.+....+....+.....   ...+..+.+++..|+..+|.+|
T Consensus       165 ~~y~aPE~~~~~~~~~~~DiwSlGvil~ellt-g~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~l~~~p~~R  243 (323)
T cd05616         165 PDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLA-GQAPFEGEDEDELFQSIMEHNVAYPKSMSKEAVAICKGLMTKHPGKR  243 (323)
T ss_pred             hhhcCHHHhcCCCCCCccchhchhHHHHHHHh-CCCCCCCCCHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHcccCHHhc
Confidence            46899999988888999999999999999999 9999998887777777754421   1223445677888899999999


Q ss_pred             CCh
Q psy8478          79 PSA   81 (88)
Q Consensus        79 p~~   81 (88)
                      ++.
T Consensus       244 ~~~  246 (323)
T cd05616         244 LGC  246 (323)
T ss_pred             CCC
Confidence            985

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=99.54  E-value=1.2e-13  Score=74.45  Aligned_cols=84  Identities=36%  Similarity=0.776  Sum_probs=66.8

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCC----CChHHHHHHHhhCcccC
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA----NCSHLIRSRNRLTENKA   78 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~l~~~~~~r   78 (88)
                      .|++||.+.+..++.++|+|++|++++++++.|..|+.+....+....+..+.+...+.    .+.+++..|+..+|.+|
T Consensus       204 ~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~R  283 (304)
T cd05101         204 KWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLLKEGHRMDKPANCTNELYMMMRDCWHAIPSHR  283 (304)
T ss_pred             eeeCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcccChhhC
Confidence            58999998877788899999999999999876778888777777777776655443333    34556777888889999


Q ss_pred             CChhhhhh
Q psy8478          79 PSAVSKKR   86 (88)
Q Consensus        79 p~~~~~~~   86 (88)
                      |++.++.+
T Consensus       284 ps~~e~l~  291 (304)
T cd05101         284 PTFKQLVE  291 (304)
T ss_pred             CCHHHHHH
Confidence            99999865

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>KOG0198|consensus

Probab=99.54  E-value=1.9e-15  Score=81.51  Aligned_cols=85  Identities=21%  Similarity=0.437  Sum_probs=61.7

Q ss_pred             CCcccCcchhccCC-CCchhhHHHHHHHHHHHHhcCCCCCCC-CCHHHHHHHHH-cCCCCCCCCC----ChHHHHHHHhh
Q psy8478           1 MTRWMAPECLVDGL-FSSQSDVWAFGVLLWEIMSLGQQPYPA-RTNVDVLHYVR-GGGRLNRPAN----CSHLIRSRNRL   73 (88)
Q Consensus         1 ~~~~~~pe~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~-~~~~~~~~~~----~~~~~~~~l~~   73 (88)
                      ++.||+||++.... ....+|+|++||++.++++ |..|+.. ....+....+. ++..+..|..    ..+++..|+..
T Consensus       184 tp~~maPEvi~~g~~~~~~sDiWSlGCtVvEM~T-g~~PW~~~~~~~~~~~~ig~~~~~P~ip~~ls~~a~~Fl~~C~~~  262 (313)
T KOG0198|consen  184 TPNYMAPEVIRNGEVARRESDIWSLGCTVVEMLT-GKPPWSEFFEEAEALLLIGREDSLPEIPDSLSDEAKDFLRKCFKR  262 (313)
T ss_pred             CccccCchhhcCCCcCCccchhhhcCCEEEeccC-CCCcchhhcchHHHHHHHhccCCCCCCCcccCHHHHHHHHHHhhc
Confidence            46799999998632 2348999999999999999 8999876 34444444443 3333445554    45677778888


Q ss_pred             CcccCCChhhhhh
Q psy8478          74 TENKAPSAVSKKR   86 (88)
Q Consensus        74 ~~~~rp~~~~~~~   86 (88)
                      +|++||||+++++
T Consensus       263 ~p~~Rpta~eLL~  275 (313)
T KOG0198|consen  263 DPEKRPTAEELLE  275 (313)
T ss_pred             CcccCcCHHHHhh
Confidence            8999999998864

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=99.54  E-value=1e-13  Score=73.87  Aligned_cols=85  Identities=27%  Similarity=0.581  Sum_probs=65.4

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCC----CChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA----NCSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~l~~~~~~   77 (88)
                      ..|++||......++.++|+|++|++++++++.|..|+...........+..+...+.+.    ...+.+.+|+..+|+.
T Consensus       175 ~~y~~PE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~  254 (279)
T cd05109         175 IKWMALESILHRRFTHQSDVWSYGVTVWELMTFGAKPYDGIPAREIPDLLEKGERLPQPPICTIDVYMIMVKCWMIDSEC  254 (279)
T ss_pred             hhhCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHCCCcCCCCccCCHHHHHHHHHHcCCChhh
Confidence            358999998877788899999999999998876888887766666666665554443333    3446777888899999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||++.++.+
T Consensus       255 Rp~~~~l~~  263 (279)
T cd05109         255 RPRFRELVD  263 (279)
T ss_pred             CcCHHHHHH
Confidence            999999864

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=99.54  E-value=1e-13  Score=73.39  Aligned_cols=84  Identities=35%  Similarity=0.607  Sum_probs=66.4

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCC----CCCCChHHHHHHHhhCcccC
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLN----RPANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~l~~~~~~r   78 (88)
                      .|++||......++.++|+|++|++++++++.|..||.+....+....+..+...+    .+..+.+++..|+..+|.+|
T Consensus       168 ~y~~PE~~~~~~~~~~~DvwslG~~l~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~R  247 (262)
T cd05071         168 KWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEER  247 (262)
T ss_pred             eecCHhHhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCChHHHHHHHhcCCCCCCccccCHHHHHHHHHHccCCcccC
Confidence            58999988777788899999999999999886778887776666666665544332    34456678888999999999


Q ss_pred             CChhhhhh
Q psy8478          79 PSAVSKKR   86 (88)
Q Consensus        79 p~~~~~~~   86 (88)
                      |++.++.+
T Consensus       248 p~~~~~~~  255 (262)
T cd05071         248 PTFEYLQA  255 (262)
T ss_pred             CCHHHHHH
Confidence            99998865

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>KOG0032|consensus

Probab=99.54  E-value=4.2e-14  Score=78.43  Aligned_cols=85  Identities=22%  Similarity=0.445  Sum_probs=71.6

Q ss_pred             CCcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCC-C------CCCCCChHHHHHHHhh
Q psy8478           1 MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGR-L------NRPANCSHLIRSRNRL   73 (88)
Q Consensus         1 ~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~------~~~~~~~~~~~~~l~~   73 (88)
                      ++.|+|||++....|+...|+|++|+++|.++. |.+||.+.........|..+.. .      .....+.++++.++..
T Consensus       201 tp~y~APEvl~~~~y~~~~DiWS~Gvi~yiLL~-G~~PF~~~~~~~~~~~i~~~~~~f~~~~w~~is~~akd~i~~ll~~  279 (382)
T KOG0032|consen  201 TPEYVAPEVLGGRPYGDEVDVWSIGVILYILLS-GVPPFWGETEFEIFLAILRGDFDFTSEPWDDISESAKDFIRKLLEF  279 (382)
T ss_pred             CccccCchhhcCCCCCcccchhHHHHHHHHHhh-CCCCCcCCChhHHHHHHHcCCCCCCCCCccccCHHHHHHHHHhccc
Confidence            467999999998899999999999999999988 9999998887777777766532 1      1234577899999999


Q ss_pred             CcccCCChhhhhh
Q psy8478          74 TENKAPSAVSKKR   86 (88)
Q Consensus        74 ~~~~rp~~~~~~~   86 (88)
                      ++.+|+++.++++
T Consensus       280 dp~~R~ta~~~L~  292 (382)
T KOG0032|consen  280 DPRKRLTAAQALQ  292 (382)
T ss_pred             CcccCCCHHHHhc
Confidence            9999999999875

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=99.54  E-value=4.6e-14  Score=75.61  Aligned_cols=84  Identities=21%  Similarity=0.322  Sum_probs=62.4

Q ss_pred             CcccCcchhcc-CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCC------------------------
Q psy8478           2 TRWMAPECLVD-GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGR------------------------   56 (88)
Q Consensus         2 ~~~~~pe~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------------------------   56 (88)
                      +.|++||.+.+ ..++.++|+|++|++++++++ |..||.+....+....+.....                        
T Consensus       167 ~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (288)
T cd07871         167 LWYRPPDVLLGSTEYSTPIDMWGVGCILYEMAT-GRPMFPGSTVKEELHLIFRLLGTPTEETWPGITSNEEFRSYLFPQY  245 (288)
T ss_pred             ccccChHHhcCCcccCcHHHHHHHHHHHHHHHh-CCCCCCCCCHHHHHHHHHHHhCCCChHHhhccccchhhhccccCcc
Confidence            46899998865 467889999999999999999 9999987665554443321100                        


Q ss_pred             ---------CCCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          57 ---------LNRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        57 ---------~~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                               ...+..+.+++.+||..+|.+|||++++++
T Consensus       246 ~~~~~~~~~~~~~~~~~dll~~mL~~dp~~R~t~~~~l~  284 (288)
T cd07871         246 RAQPLINHAPRLDTDGIDLLSSLLLYETKSRISAEAALR  284 (288)
T ss_pred             CCCchHHhCCCCCHHHHHHHHHhcCcCcccCCCHHHHhc
Confidence                     011233557889999999999999999864

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=99.54  E-value=1.2e-13  Score=74.45  Aligned_cols=85  Identities=28%  Similarity=0.600  Sum_probs=64.4

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCC----ChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN----CSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~l~~~~~~   77 (88)
                      ..|++||.+.+..++.++|+|++|++++++++.|..|+.+....+....+..+...+.+..    ...++..|+..+|++
T Consensus       175 ~~y~~PE~~~~~~~~~~~DiwslG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~c~~~~p~~  254 (303)
T cd05110         175 IKWMALECIHYRKFTHQSDVWSYGVTIWELMTFGGKPYDGIPTREIPDLLEKGERLPQPPICTIDVYMVMVKCWMIDADS  254 (303)
T ss_pred             cccCCHHHhccCCCChHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHcCCChhh
Confidence            3689999988778888999999999999988768888877666655555555544433333    445667788888999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||++.++.+
T Consensus       255 Rp~~~~l~~  263 (303)
T cd05110         255 RPKFKELAA  263 (303)
T ss_pred             CcCHHHHHH
Confidence            999999764

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=99.53  E-value=4.5e-14  Score=78.03  Aligned_cols=84  Identities=20%  Similarity=0.382  Sum_probs=62.0

Q ss_pred             CcccCcchhccC-CCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHc-----------------------C-CC
Q psy8478           2 TRWMAPECLVDG-LFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRG-----------------------G-GR   56 (88)
Q Consensus         2 ~~~~~pe~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-----------------------~-~~   56 (88)
                      ..|++||.+.+. .++.+.|+|++|++++++++ |..||.+.+..+....+..                       . ..
T Consensus       168 ~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~-g~~pf~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  246 (372)
T cd07853         168 QYYRAPEILMGSRHYTSAVDIWSVGCIFAELLG-RRILFQAQSPIQQLDLITDLLGTPSLEAMRSACEGARAHILRGPHK  246 (372)
T ss_pred             CCcCCHHHHcCCCCCCcHHHHHhHHHHHHHHHc-CCCCCCCCCHHHHHHHHHHHcCCCCHHHHHHhhHHHHHHHHhCCCC
Confidence            358999988764 46788999999999999999 9999987766554444321                       0 00


Q ss_pred             C-----------CCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          57 L-----------NRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        57 ~-----------~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                      +           ..+..+.+++.+|+..+|.+||++.++++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~  287 (372)
T cd07853         247 PPSLPVLYTLSSQATHEAVHLLCRMLVFDPDKRISAADALA  287 (372)
T ss_pred             CCchHHhcccCCCCCHHHHHHHHHhCCCChhhCcCHHHHhc
Confidence            0           11233457888999999999999998864

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=99.53  E-value=6.7e-14  Score=74.03  Aligned_cols=83  Identities=24%  Similarity=0.504  Sum_probs=62.3

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcC--CCCCCC----CCChHHHHHHHhhCcc
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGG--GRLNRP----ANCSHLIRSRNRLTEN   76 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~----~~~~~~~~~~l~~~~~   76 (88)
                      .|++||.+....++.++|+|++|++++++++ |..||...+.......+...  ..+..+    ..+.+++..|+..+|.
T Consensus       173 ~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~  251 (265)
T cd06631         173 YWMAPEVINESGYGRKSDIWSIGCTVFEMAT-GKPPLASMDRLAAMFYIGAHRGLMPRLPDSFSAAAIDFVTSCLTRDQH  251 (265)
T ss_pred             cccChhhhcCCCCcchhhHHHHHHHHHHHHh-CCCccccCChHHHHHHhhhccCCCCCCCCCCCHHHHHHHHHHhcCCcc
Confidence            5889999887778889999999999999999 99999766554433333222  122233    3455678888889999


Q ss_pred             cCCChhhhhh
Q psy8478          77 KAPSAVSKKR   86 (88)
Q Consensus        77 ~rp~~~~~~~   86 (88)
                      +||++.++++
T Consensus       252 ~Rp~~~~~l~  261 (265)
T cd06631         252 ERPSALQLLR  261 (265)
T ss_pred             cCCCHHHHhc
Confidence            9999999875

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=99.53  E-value=3.9e-14  Score=78.46  Aligned_cols=85  Identities=32%  Similarity=0.694  Sum_probs=64.6

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCH-HHHHHHHHcCCCCCC----CCCChHHHHHHHhhCccc
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTN-VDVLHYVRGGGRLNR----PANCSHLIRSRNRLTENK   77 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~----~~~~~~~~~~~l~~~~~~   77 (88)
                      .|++||.+....++.++|+|++|++++++++.|..||..... ......+..+.+...    +..+.+++..|+..+|++
T Consensus       281 ~y~aPE~~~~~~~~~~sDi~slG~~l~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~  360 (375)
T cd05104         281 KWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSSPYPGMPVDSKFYKMIKEGYRMLSPECAPSEMYDIMKSCWDADPLK  360 (375)
T ss_pred             ceeChhHhcCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCchHHHHHHHHhCccCCCCCCCCHHHHHHHHHHccCChhH
Confidence            599999998888889999999999999988767888875543 334444444433322    334667888899999999


Q ss_pred             CCChhhhhhc
Q psy8478          78 APSAVSKKRI   87 (88)
Q Consensus        78 rp~~~~~~~~   87 (88)
                      ||++.++.+.
T Consensus       361 RPs~~eil~~  370 (375)
T cd05104         361 RPTFKQIVQL  370 (375)
T ss_pred             CcCHHHHHHH
Confidence            9999998753

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>KOG1989|consensus

Probab=99.53  E-value=5.2e-15  Score=86.46  Aligned_cols=82  Identities=20%  Similarity=0.353  Sum_probs=63.3

Q ss_pred             CCcccCcchhc---cCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC----CCCCCChHHHHHHHhh
Q psy8478           1 MTRWMAPECLV---DGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRL----NRPANCSHLIRSRNRL   73 (88)
Q Consensus         1 ~~~~~~pe~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~l~~   73 (88)
                      ++.|.+||++.   +...+.++|||++||++|.+++ ...||.......+++.   .+..    .....+.++|+.||..
T Consensus       218 Tp~YRsPEMIDlysg~pI~eKsDIWALGclLYkLCy-~t~PFe~sg~laIlng---~Y~~P~~p~ys~~l~~LI~~mL~~  293 (738)
T KOG1989|consen  218 TPQYRSPEMIDLYSGLPIGEKSDIWALGCLLYKLCY-FTTPFEESGKLAILNG---NYSFPPFPNYSDRLKDLIRTMLQP  293 (738)
T ss_pred             CccccChHHHhhhcCCCCcchhHHHHHHHHHHHHHH-hCCCcCcCcceeEEec---cccCCCCccHHHHHHHHHHHHhcc
Confidence            46899999986   4567889999999999999998 8999986544333222   2222    2234678899999999


Q ss_pred             CcccCCChhhhhh
Q psy8478          74 TENKAPSAVSKKR   86 (88)
Q Consensus        74 ~~~~rp~~~~~~~   86 (88)
                      +|.+||++.|+.+
T Consensus       294 nP~~RPnI~Qv~~  306 (738)
T KOG1989|consen  294 NPDERPNIYQVLE  306 (738)
T ss_pred             CcccCCCHHHHHH
Confidence            9999999999864

>KOG0696|consensus

Probab=99.53  E-value=3.3e-14  Score=79.19  Aligned_cols=79  Identities=20%  Similarity=0.386  Sum_probs=66.0

Q ss_pred             CCcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcC---CCCCCCCCChHHHHHHHhhCccc
Q psy8478           1 MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGG---GRLNRPANCSHLIRSRNRLTENK   77 (88)
Q Consensus         1 ~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~~~~~~~~~~~~~~~l~~~~~~   77 (88)
                      ++-|+|||++.+..|+..+|+|++|+++++++. |++||.+.+..++.+.|.+-   ++.....++......+|...|.+
T Consensus       513 TPdYiAPEIi~YqPYgksvDWWa~GVLLyEmla-GQpPFdGeDE~elF~aI~ehnvsyPKslSkEAv~ickg~ltK~P~k  591 (683)
T KOG0696|consen  513 TPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLA-GQPPFDGEDEDELFQAIMEHNVSYPKSLSKEAVAICKGLLTKHPGK  591 (683)
T ss_pred             CCcccccceEEecccccchhHHHHHHHHHHHHc-CCCCCCCCCHHHHHHHHHHccCcCcccccHHHHHHHHHHhhcCCcc
Confidence            467999999999999999999999999999999 99999999999999988643   22233444556777889999999


Q ss_pred             CCC
Q psy8478          78 APS   80 (88)
Q Consensus        78 rp~   80 (88)
                      |..
T Consensus       592 RLG  594 (683)
T KOG0696|consen  592 RLG  594 (683)
T ss_pred             ccC
Confidence            875

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=99.53  E-value=3.4e-14  Score=78.66  Aligned_cols=85  Identities=34%  Similarity=0.747  Sum_probs=63.7

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHH-HHHHHHcCCCCCC----CCCChHHHHHHHhhCccc
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVD-VLHYVRGGGRLNR----PANCSHLIRSRNRLTENK   77 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~----~~~~~~~~~~~l~~~~~~   77 (88)
                      .|++||.+....++.++|+|++|++++++++.|..||....... ....+..+.....    +..+.+++..|+..+|.+
T Consensus       279 ~y~aPE~~~~~~~~~~~DvwSlGvil~ellt~G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~  358 (374)
T cd05106         279 KWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGKSPYPGILVNSKFYKMVKRGYQMSRPDFAPPEIYSIMKMCWNLEPTE  358 (374)
T ss_pred             ceeCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCccccccHHHHHHHHcccCccCCCCCCHHHHHHHHHHcCCChhh
Confidence            59999998877888999999999999999865888987654333 2333333333322    345667788889999999


Q ss_pred             CCChhhhhhc
Q psy8478          78 APSAVSKKRI   87 (88)
Q Consensus        78 rp~~~~~~~~   87 (88)
                      ||++.++.+.
T Consensus       359 RPs~~~l~~~  368 (374)
T cd05106         359 RPTFSQISQL  368 (374)
T ss_pred             CcCHHHHHHH
Confidence            9999998763

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=99.53  E-value=1.1e-13  Score=72.85  Aligned_cols=85  Identities=39%  Similarity=0.681  Sum_probs=66.5

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCC----CChHHHHHHHhhCcccC
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA----NCSHLIRSRNRLTENKA   78 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~l~~~~~~r   78 (88)
                      .|++||.+....++.+.|+|++|++++++++.|..||......+....+..+.+...+.    .+.+++..|+..+|..|
T Consensus       162 ~y~~pe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  241 (254)
T cd05083         162 KWTAPEALKHKKFSSKSDVWSYGVLLWEVFSYGRAPYPKMSLKEVKECVEKGYRMEPPEGCPADVYVLMTSCWETEPKKR  241 (254)
T ss_pred             eecCHHHhccCCcCchhhHHHHHHHHHHHHhCCCCCCccCCHHHHHHHHhCCCCCCCCCcCCHHHHHHHHHHcCCChhhC
Confidence            58899988777788899999999999998865888988777776666666554443333    34567778888889999


Q ss_pred             CChhhhhhc
Q psy8478          79 PSAVSKKRI   87 (88)
Q Consensus        79 p~~~~~~~~   87 (88)
                      |++.++.+.
T Consensus       242 p~~~~l~~~  250 (254)
T cd05083         242 PSFHKLREK  250 (254)
T ss_pred             cCHHHHHHH
Confidence            999998753

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=99.53  E-value=5.8e-14  Score=75.14  Aligned_cols=84  Identities=17%  Similarity=0.385  Sum_probs=65.7

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCC------CCCCChHHHHHHHhhCc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLN------RPANCSHLIRSRNRLTE   75 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~l~~~~   75 (88)
                      ..|++||......++.+.|+|++|++++++++ |..||...+..+....+.......      .+..+.+++.+|+..+|
T Consensus       179 ~~y~aPE~~~~~~~~~~~Dv~slGv~l~ell~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p  257 (285)
T cd06648         179 PYWMAPEVISRLPYGTEVDIWSLGIMVIEMVD-GEPPYFNEPPLQAMKRIRDNLPPKLKNLHKVSPRLRSFLDRMLVRDP  257 (285)
T ss_pred             ccccCHHHhcCCCCCCcccHHHHHHHHHHHHh-CCCCCcCCCHHHHHHHHHhcCCCCCcccccCCHHHHHHHHHHcccCh
Confidence            35899999877778889999999999999999 999988777666666665442221      23446678888898999


Q ss_pred             ccCCChhhhhh
Q psy8478          76 NKAPSAVSKKR   86 (88)
Q Consensus        76 ~~rp~~~~~~~   86 (88)
                      ++||++.++++
T Consensus       258 ~~Rpt~~~il~  268 (285)
T cd06648         258 AQRATAAELLN  268 (285)
T ss_pred             hhCcCHHHHcc
Confidence            99999999865

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=99.53  E-value=6.5e-14  Score=74.01  Aligned_cols=85  Identities=20%  Similarity=0.346  Sum_probs=63.4

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCC--HHHHHHHHHcCCCCCCCC-----CChHHHHHHHhhC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPART--NVDVLHYVRGGGRLNRPA-----NCSHLIRSRNRLT   74 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~-----~~~~~~~~~l~~~   74 (88)
                      +.|++||.+.+..++.+.|+|++|++++++++ |..|+....  ..+....+..+...+.+.     ...+.+.+|+..+
T Consensus       170 ~~y~apE~~~~~~~~~~~Di~slG~il~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~cl~~~  248 (267)
T cd08224         170 PYYMSPERIHENGYNFKSDIWSLGCLLYEMAA-LQSPFYGDKMNLYSLCKKIEKCDYPPLPADHYSEELRDLVSRCINPD  248 (267)
T ss_pred             ccccCHHHhccCCCCchhcHHHHHHHHHHHHH-CCCCcccCCccHHHHHhhhhcCCCCCCChhhcCHHHHHHHHHHcCCC
Confidence            35889999887788889999999999999999 888885432  334444444443333333     4566788888889


Q ss_pred             cccCCChhhhhhc
Q psy8478          75 ENKAPSAVSKKRI   87 (88)
Q Consensus        75 ~~~rp~~~~~~~~   87 (88)
                      |.+||++.++.+.
T Consensus       249 p~~Rp~~~~il~~  261 (267)
T cd08224         249 PEKRPDISYVLQV  261 (267)
T ss_pred             cccCCCHHHHHHH
Confidence            9999999998764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=99.53  E-value=5.5e-14  Score=74.26  Aligned_cols=85  Identities=32%  Similarity=0.639  Sum_probs=67.2

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCC----CCCChHHHHHHHhhCcccC
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNR----PANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~l~~~~~~r   78 (88)
                      .|++||.+....++.+.|+|++|++++++++.|..||.+....+....+.++...+.    +..+.+++.+|+..+|.+|
T Consensus       168 ~y~~PE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R  247 (260)
T cd05073         168 KWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVIRALERGYRMPRPENCPEELYNIMMRCWKNRPEER  247 (260)
T ss_pred             cccCHhHhccCCcCccccchHHHHHHHHHHhcCCCCCCCCCHHHHHHHHhCCCCCCCcccCCHHHHHHHHHHcccCcccC
Confidence            488999987777788899999999999998768889987777666666666544332    3446678888999999999


Q ss_pred             CChhhhhhc
Q psy8478          79 PSAVSKKRI   87 (88)
Q Consensus        79 p~~~~~~~~   87 (88)
                      |++.++.+.
T Consensus       248 p~~~~l~~~  256 (260)
T cd05073         248 PTFEYIQSV  256 (260)
T ss_pred             cCHHHHHHH
Confidence            999988653

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=99.52  E-value=7.9e-14  Score=73.31  Aligned_cols=84  Identities=18%  Similarity=0.413  Sum_probs=62.8

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC--C----CCCCChHHHHHHHhhCc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRL--N----RPANCSHLIRSRNRLTE   75 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~----~~~~~~~~~~~~l~~~~   75 (88)
                      ..|++||.+.+..++.++|+|++|++++++++ |..|+......+....+......  .    .+..+.+++..|+..+|
T Consensus       163 ~~y~~PE~~~~~~~~~~~Di~s~G~il~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P  241 (256)
T cd06612         163 PFWMAPEVIQEIGYNNKADIWSLGITAIEMAE-GKPPYSDIHPMRAIFMIPNKPPPTLSDPEKWSPEFNDFVKKCLVKDP  241 (256)
T ss_pred             ccccCHHHHhcCCCCchhhHHHHHHHHHHHHh-CCCCCCCcchhhhhhhhccCCCCCCCchhhcCHHHHHHHHHHHhcCh
Confidence            46899999887788889999999999999999 99998766554433333221111  1    12345678888999999


Q ss_pred             ccCCChhhhhh
Q psy8478          76 NKAPSAVSKKR   86 (88)
Q Consensus        76 ~~rp~~~~~~~   86 (88)
                      .+||++.++++
T Consensus       242 ~~Rps~~~il~  252 (256)
T cd06612         242 EERPSAIQLLQ  252 (256)
T ss_pred             hhCcCHHHHhc
Confidence            99999999875

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=99.52  E-value=4.5e-14  Score=75.31  Aligned_cols=84  Identities=20%  Similarity=0.347  Sum_probs=61.0

Q ss_pred             CcccCcchhc-----cCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCC-----CCCCChHHHHHHH
Q psy8478           2 TRWMAPECLV-----DGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLN-----RPANCSHLIRSRN   71 (88)
Q Consensus         2 ~~~~~pe~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~~~~l   71 (88)
                      ..|++||.+.     ...++.+.|+|++|++++++++ |..||...........+.......     .+..+.+++.+|+
T Consensus       185 ~~y~aPE~l~~~~~~~~~~~~~~DvwslG~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl  263 (282)
T cd06636         185 PYWMAPEVIACDENPDATYDYRSDIWSLGITAIEMAE-GAPPLCDMHPMRALFLIPRNPPPKLKSKKWSKKFIDFIEGCL  263 (282)
T ss_pred             ccccCHhhcCcccCcCcCCCcccchhHHHHHHHHHHh-CCCCccccCHHhhhhhHhhCCCCCCcccccCHHHHHHHHHHh
Confidence            3589999875     2356778999999999999999 988987655444333333222211     2345668888999


Q ss_pred             hhCcccCCChhhhhh
Q psy8478          72 RLTENKAPSAVSKKR   86 (88)
Q Consensus        72 ~~~~~~rp~~~~~~~   86 (88)
                      ..+|.+||++.++.+
T Consensus       264 ~~~p~~Rp~~~ell~  278 (282)
T cd06636         264 VKNYLSRPSTEQLLK  278 (282)
T ss_pred             CCChhhCcCHHHHhc
Confidence            999999999999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=99.52  E-value=3.4e-14  Score=76.03  Aligned_cols=84  Identities=21%  Similarity=0.401  Sum_probs=60.9

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHH----HHHHHHHcCC---CCCCCCCChHHHHHHHhhC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNV----DVLHYVRGGG---RLNRPANCSHLIRSRNRLT   74 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~---~~~~~~~~~~~~~~~l~~~   74 (88)
                      ..|++||.+....++.++|+|++|++++++++ |..||......    .....+....   ....+..+.+++++|+..+
T Consensus       165 ~~y~aPE~~~~~~~~~~~DvwslGvil~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~l~~~  243 (285)
T cd05631         165 VGYMAPEVINNEKYTFSPDWWGLGCLIYEMIQ-GQSPFRKRKERVKREEVDRRVKEDQEEYSEKFSEDAKSICRMLLTKN  243 (285)
T ss_pred             CCccCHhhhcCCCCCcccCchhHHHHHHHHHh-CCCCCCCCCcchhHHHHHHHhhcccccCCccCCHHHHHHHHHHhhcC
Confidence            46899999988888899999999999999999 99999765432    2222222211   1123445667888899999


Q ss_pred             cccCCC-----hhhhhh
Q psy8478          75 ENKAPS-----AVSKKR   86 (88)
Q Consensus        75 ~~~rp~-----~~~~~~   86 (88)
                      |.+||+     ++++.+
T Consensus       244 P~~R~~~~~~~~~~~~~  260 (285)
T cd05631         244 PKERLGCRGNGAAGVKQ  260 (285)
T ss_pred             HHHhcCCCCCCHHHHhc
Confidence            999997     566643

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=99.52  E-value=1.2e-13  Score=73.29  Aligned_cols=84  Identities=33%  Similarity=0.618  Sum_probs=66.2

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCC----CChHHHHHHHhhCcccC
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA----NCSHLIRSRNRLTENKA   78 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~l~~~~~~r   78 (88)
                      .|++||.+....++.++|+|++|+++++++..|..||......+....+......+.+.    .+.+.+.+|+..+|.+|
T Consensus       176 ~y~~PE~~~~~~~~~~~DvwslG~~l~e~l~~g~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  255 (269)
T cd05065         176 RWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQDVINAIEQDYRLPPPMDCPTALHQLMLDCWQKDRNAR  255 (269)
T ss_pred             eecCHhHhccCcccchhhhhhhHHHHHHHhcCCCCCCCCCCHHHHHHHHHcCCcCCCcccCCHHHHHHHHHHcCCChhhC
Confidence            58999998877888899999999999997755888998777777777776554444333    45567777888899999


Q ss_pred             CChhhhhh
Q psy8478          79 PSAVSKKR   86 (88)
Q Consensus        79 p~~~~~~~   86 (88)
                      |+++++.+
T Consensus       256 p~~~~i~~  263 (269)
T cd05065         256 PKFGQIVS  263 (269)
T ss_pred             cCHHHHHH
Confidence            99999865

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>KOG0599|consensus

Probab=99.52  E-value=5.1e-14  Score=74.84  Aligned_cols=85  Identities=24%  Similarity=0.429  Sum_probs=69.1

Q ss_pred             CCcccCcchhcc------CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC-CCCCC------CCChHHH
Q psy8478           1 MTRWMAPECLVD------GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG-RLNRP------ANCSHLI   67 (88)
Q Consensus         1 ~~~~~~pe~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~------~~~~~~~   67 (88)
                      ++.|+|||.++.      ..|+..+|.|++|++++.++. |.+||.+....-++..|.+|. ....|      ....+++
T Consensus       185 TPgYLAPEtikC~m~e~~pGYs~EVD~Wa~GVImyTLLa-GcpPFwHRkQmlMLR~ImeGkyqF~speWadis~~~KdLI  263 (411)
T KOG0599|consen  185 TPGYLAPETIKCSMYENHPGYSKEVDEWACGVIMYTLLA-GCPPFWHRKQMLMLRMIMEGKYQFRSPEWADISATVKDLI  263 (411)
T ss_pred             CCcccChhheeeecccCCCCccchhhHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHHhcccccCCcchhhccccHHHHH
Confidence            478999999873      358889999999999999999 999999888777788887663 33222      3456789


Q ss_pred             HHHHhhCcccCCChhhhhh
Q psy8478          68 RSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        68 ~~~l~~~~~~rp~~~~~~~   86 (88)
                      .++|+++|.+|.|+++.++
T Consensus       264 srlLqVdp~~Ritake~La  282 (411)
T KOG0599|consen  264 SRLLQVDPTKRITAKEALA  282 (411)
T ss_pred             HHHHeeCchhcccHHHHhc
Confidence            9999999999999998753

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=99.52  E-value=1.1e-13  Score=75.52  Aligned_cols=84  Identities=37%  Similarity=0.786  Sum_probs=66.9

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCC----CChHHHHHHHhhCcccC
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA----NCSHLIRSRNRLTENKA   78 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~l~~~~~~r   78 (88)
                      .|++||.+....++.++|+|++|++++++++.|..||.+....+....+..+.....+.    .+.+++.+|+..+|.+|
T Consensus       201 ~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~R  280 (334)
T cd05100         201 KWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPVEELFKLLKEGHRMDKPANCTHELYMIMRECWHAVPSQR  280 (334)
T ss_pred             eEcCHHHhccCCcCchhhhHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcccChhhC
Confidence            58999998887888899999999999998876788888877777777776554443333    34567778888889999


Q ss_pred             CChhhhhh
Q psy8478          79 PSAVSKKR   86 (88)
Q Consensus        79 p~~~~~~~   86 (88)
                      |++.++.+
T Consensus       281 ps~~ell~  288 (334)
T cd05100         281 PTFKQLVE  288 (334)
T ss_pred             cCHHHHHH
Confidence            99998864

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=99.52  E-value=7.2e-14  Score=75.08  Aligned_cols=84  Identities=17%  Similarity=0.371  Sum_probs=64.1

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCC------CCCCChHHHHHHHhhCc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLN------RPANCSHLIRSRNRLTE   75 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~l~~~~   75 (88)
                      ..|++||.+....++.+.|+|++|++++++++ |..||......+....+.......      .+..+.+++..++..+|
T Consensus       182 ~~y~aPE~~~~~~~~~~~Dv~slGvil~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P  260 (292)
T cd06658         182 PYWMAPEVISRLPYGTEVDIWSLGIMVIEMID-GEPPYFNEPPLQAMRRIRDNLPPRVKDSHKVSSVLRGFLDLMLVREP  260 (292)
T ss_pred             ccccCHHHHccCCCCchhhHHHHHHHHHHHHh-CCCCCCCCCHHHHHHHHHhcCCCccccccccCHHHHHHHHHHccCCh
Confidence            35899999887778889999999999999999 999998776665555554332221      12335567778888999


Q ss_pred             ccCCChhhhhh
Q psy8478          76 NKAPSAVSKKR   86 (88)
Q Consensus        76 ~~rp~~~~~~~   86 (88)
                      .+||+++++++
T Consensus       261 ~~Rpt~~~il~  271 (292)
T cd06658         261 SQRATAQELLQ  271 (292)
T ss_pred             hHCcCHHHHhh
Confidence            99999999875

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=99.52  E-value=5.9e-14  Score=74.75  Aligned_cols=83  Identities=20%  Similarity=0.394  Sum_probs=64.6

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCC----CCCChHHHHHHHhhCcccC
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNR----PANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~l~~~~~~r   78 (88)
                      .|++||.+....++.+.|+|++|++++++++ |..|+...........+..+..+..    +..+.+++..|+..+|.+|
T Consensus       166 ~y~apE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  244 (277)
T cd06640         166 FWMAPEVIQQSAYDSKADIWSLGITAIELAK-GEPPNSDMHPMRVLFLIPKNNPPTLTGEFSKPFKEFIDACLNKDPSFR  244 (277)
T ss_pred             cccCHhHhccCCCccHHHHHHHHHHHHHHHH-CCCCCCCcChHhHhhhhhcCCCCCCchhhhHHHHHHHHHHcccCcccC
Confidence            5789999877778889999999999999999 9999987666655555444433322    3345678888999999999


Q ss_pred             CChhhhhh
Q psy8478          79 PSAVSKKR   86 (88)
Q Consensus        79 p~~~~~~~   86 (88)
                      |++.++.+
T Consensus       245 p~~~~il~  252 (277)
T cd06640         245 PTAKELLK  252 (277)
T ss_pred             cCHHHHHh
Confidence            99999865

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=99.52  E-value=2.9e-13  Score=71.29  Aligned_cols=85  Identities=38%  Similarity=0.713  Sum_probs=66.8

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCC----CCCChHHHHHHHhhCcccC
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNR----PANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~l~~~~~~r   78 (88)
                      .|++||.+....++.+.|+|++|++++++++.|..||......+....+..+.....    +..+.+++..|+..+|.+|
T Consensus       164 ~~~ape~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  243 (256)
T cd05039         164 KWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPHVEKGYRMEAPEGCPPEVYKVMKDCWELDPAKR  243 (256)
T ss_pred             cccCchhhcCCcCCcHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHhcCCCCCCccCCCHHHHHHHHHHhccChhhC
Confidence            488999887777888999999999999988658889887777776666655543332    3456678888889999999


Q ss_pred             CChhhhhhc
Q psy8478          79 PSAVSKKRI   87 (88)
Q Consensus        79 p~~~~~~~~   87 (88)
                      |++.++.+.
T Consensus       244 p~~~~l~~~  252 (256)
T cd05039         244 PTFKQLREQ  252 (256)
T ss_pred             cCHHHHHHH
Confidence            999998753

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=99.52  E-value=1.2e-13  Score=74.36  Aligned_cols=84  Identities=18%  Similarity=0.413  Sum_probs=65.4

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC------CCCCCChHHHHHHHhhCc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRL------NRPANCSHLIRSRNRLTE   75 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------~~~~~~~~~~~~~l~~~~   75 (88)
                      ..|++||.+....++.+.|+|++|++++++++ |..||......+....+......      ..+..+.+++.+++..+|
T Consensus       181 ~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~P  259 (297)
T cd06659         181 PYWMAPEVISRTPYGTEVDIWSLGIMVIEMVD-GEPPYFSDSPVQAMKRLRDSPPPKLKNAHKISPVLRDFLERMLTREP  259 (297)
T ss_pred             ccccCHHHHccCCCCchhhHHHHHHHHHHHHh-CCCCCCCCCHHHHHHHHhccCCCCccccCCCCHHHHHHHHHHhcCCc
Confidence            35899999987778889999999999999999 99999877666655555432211      123345678889999999


Q ss_pred             ccCCChhhhhh
Q psy8478          76 NKAPSAVSKKR   86 (88)
Q Consensus        76 ~~rp~~~~~~~   86 (88)
                      .+||++.++.+
T Consensus       260 ~~Rps~~~ll~  270 (297)
T cd06659         260 QERATAQELLD  270 (297)
T ss_pred             ccCcCHHHHhh
Confidence            99999999875

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>KOG1025|consensus

Probab=99.52  E-value=3.9e-14  Score=83.82  Aligned_cols=84  Identities=29%  Similarity=0.563  Sum_probs=73.6

Q ss_pred             CCcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCChHHHHHHHhhCc----c
Q psy8478           1 MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPANCSHLIRSRNRLTE----N   76 (88)
Q Consensus         1 ~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~----~   76 (88)
                      ++.||+-|.++...|...+|+|++|+..|++++.|..|+.+....++...+..+.+.+.|..|+-.++..+..||    .
T Consensus       863 pikwmale~i~~~~~thqSDVWsfGVtiWElmTFGa~Py~gi~~~eI~dlle~geRLsqPpiCtiDVy~~mvkCwmid~~  942 (1177)
T KOG1025|consen  863 PIKWMALESIRIRKYTHQSDVWSFGVTIWELMTFGAKPYDGIPAEEIPDLLEKGERLSQPPICTIDVYMVMVKCWMIDAD  942 (1177)
T ss_pred             CcHHHHHHHhhccCCCchhhhhhhhhhHHHHHhcCCCccCCCCHHHhhHHHhccccCCCCCCccHHHHHHHHHHhccCcc
Confidence            478999999999999999999999999999999999999999999999999999999999999887777666665    5


Q ss_pred             cCCChhhh
Q psy8478          77 KAPSAVSK   84 (88)
Q Consensus        77 ~rp~~~~~   84 (88)
                      .||+++++
T Consensus       943 ~rp~fkel  950 (1177)
T KOG1025|consen  943 SRPTFKEL  950 (1177)
T ss_pred             cCccHHHH
Confidence            66666654

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=99.51  E-value=7.9e-14  Score=75.15  Aligned_cols=86  Identities=34%  Similarity=0.536  Sum_probs=62.5

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHh-cCCCCCCCCCHHHHHHHHHc----C-------CCCCCCCCChHHHHH
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMS-LGQQPYPARTNVDVLHYVRG----G-------GRLNRPANCSHLIRS   69 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~----~-------~~~~~~~~~~~~~~~   69 (88)
                      ..|++||.+....++.++|+|++|+++++++. .+..|+......+....+..    .       ..+..|..+.+++.+
T Consensus       204 ~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  283 (304)
T cd05096         204 IRWMAWECILMGKFTTASDVWAFGVTLWEILMLCKEQPYGELTDEQVIENAGEFFRDQGRQVYLFRPPPCPQGLYELMLQ  283 (304)
T ss_pred             ccccCHHHHhcCCCCchhhhHHHHHHHHHHHHccCCCCCCcCCHHHHHHHHHHHhhhccccccccCCCCCCHHHHHHHHH
Confidence            35899999887788899999999999999875 14567766555544433211    1       112334556788888


Q ss_pred             HHhhCcccCCChhhhhhc
Q psy8478          70 RNRLTENKAPSAVSKKRI   87 (88)
Q Consensus        70 ~l~~~~~~rp~~~~~~~~   87 (88)
                      |+..+|.+||+++++.++
T Consensus       284 cl~~~p~~RPs~~~i~~~  301 (304)
T cd05096         284 CWSRDCRERPSFSDIHAF  301 (304)
T ss_pred             HccCCchhCcCHHHHHHH
Confidence            999999999999998764

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=99.51  E-value=1.1e-14  Score=79.13  Aligned_cols=80  Identities=15%  Similarity=0.326  Sum_probs=65.0

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCC---CCCCCCChHHHHHHHhhCcccC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGR---LNRPANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~l~~~~~~r   78 (88)
                      +.|++||.+....++.++|+|++|++++++++ |..||...+..+....+.....   +..+..+.+++..++..++.+|
T Consensus       160 ~~y~aPE~~~~~~~~~~~DvwslG~il~el~~-G~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~p~~R  238 (325)
T cd05604         160 PEYLAPEVIRKQPYDNTVDWWCLGAVLYEMLY-GLPPFYCRDVAEMYDNILHKPLVLRPGASLTAWSILEELLEKDRQRR  238 (325)
T ss_pred             hhhCCHHHHcCCCCCCcCccccccceehhhhc-CCCCCCCCCHHHHHHHHHcCCccCCCCCCHHHHHHHHHHhccCHHhc
Confidence            46899999988888889999999999999999 9999988877777776654421   2233446678999999999999


Q ss_pred             CChh
Q psy8478          79 PSAV   82 (88)
Q Consensus        79 p~~~   82 (88)
                      |++.
T Consensus       239 ~~~~  242 (325)
T cd05604         239 LGAK  242 (325)
T ss_pred             CCCC
Confidence            9875

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.51  E-value=8.4e-14  Score=73.77  Aligned_cols=85  Identities=27%  Similarity=0.468  Sum_probs=61.4

Q ss_pred             CcccCcchhcc-CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCC--CCCCCCChHHHHHHHhhCcccC
Q psy8478           2 TRWMAPECLVD-GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGR--LNRPANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         2 ~~~~~pe~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~l~~~~~~r   78 (88)
                      +.|++||.+.. ..++.++|+|++|+++++++..|..|+......+..........  .+.+..+.+++.+|+..+|.+|
T Consensus       172 ~~y~aPE~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~R  251 (262)
T cd05077         172 IPWIAPECVEDSKNLSIAADKWSFGTTLWEICYNGEIPLKDKTLAEKERFYEGQCMLVTPSCKELADLMTHCMNYDPNQR  251 (262)
T ss_pred             ccccChhhhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCCcchhHHHHHHhcCccCCCCChHHHHHHHHHHcCCChhhC
Confidence            35899998864 46788999999999999987547788776554443332222211  1223456678899999999999


Q ss_pred             CChhhhhh
Q psy8478          79 PSAVSKKR   86 (88)
Q Consensus        79 p~~~~~~~   86 (88)
                      |++.++.+
T Consensus       252 p~~~~il~  259 (262)
T cd05077         252 PFFRAIMR  259 (262)
T ss_pred             cCHHHHHH
Confidence            99999875

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=99.51  E-value=1.4e-13  Score=72.45  Aligned_cols=84  Identities=17%  Similarity=0.360  Sum_probs=64.8

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCC----CCCCChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLN----RPANCSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~l~~~~~~   77 (88)
                      +.|++||......++.+.|+|++|++++++++ |..|+...+..+....+..+....    .+..+.+++.+|+..+|.+
T Consensus       166 ~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~  244 (257)
T cd08225         166 PYYLSPEICQNRPYNNKTDIWSLGCVLYELCT-LKHPFEGNNLHQLVLKICQGYFAPISPNFSRDLRSLISQLFKVSPRD  244 (257)
T ss_pred             ccccCHHHHcCCCCCchhhHHHHHHHHHHHHh-CCCCCCCccHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHhccChhh
Confidence            35889998877778889999999999999999 999987766555554444433222    2345677888888899999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||+++++.+
T Consensus       245 Rpt~~~ll~  253 (257)
T cd08225         245 RPSITSILK  253 (257)
T ss_pred             CcCHHHHhh
Confidence            999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=99.51  E-value=1.3e-13  Score=72.85  Aligned_cols=83  Identities=23%  Similarity=0.413  Sum_probs=62.7

Q ss_pred             cccCcchhccC-CCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCC---------CCCChHHHHHHHh
Q psy8478           3 RWMAPECLVDG-LFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNR---------PANCSHLIRSRNR   72 (88)
Q Consensus         3 ~~~~pe~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---------~~~~~~~~~~~l~   72 (88)
                      .|++||.+... .++.+.|+|++|++++++++ |..||......+....+........         +..+.+++..|+.
T Consensus       171 ~y~~Pe~~~~~~~~~~~~Dv~slG~i~~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~  249 (267)
T cd06610         171 CWMAPEVMEQVHGYDFKADIWSFGITAIELAT-GAAPYSKYPPMKVLMLTLQNDPPSLETGADYKKYSKSFRKMISLCLQ  249 (267)
T ss_pred             hhcChHHHccccCcCcccchHhHhHHHHHHHh-CCCCccccChhhhHHHHhcCCCCCcCCccccccccHHHHHHHHHHcC
Confidence            58899988766 67788999999999999999 9999987665555544443322211         2234577888888


Q ss_pred             hCcccCCChhhhhh
Q psy8478          73 LTENKAPSAVSKKR   86 (88)
Q Consensus        73 ~~~~~rp~~~~~~~   86 (88)
                      .+|.+||++.++.+
T Consensus       250 ~~p~~Rp~~~~ll~  263 (267)
T cd06610         250 KDPSKRPTAEELLK  263 (267)
T ss_pred             CChhhCcCHHHHhh
Confidence            99999999999875

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=99.51  E-value=1.7e-13  Score=72.45  Aligned_cols=84  Identities=24%  Similarity=0.449  Sum_probs=62.5

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCC-----CHHHHHHHHHcCCCCCCC-----CCChHHHHHHH
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPAR-----TNVDVLHYVRGGGRLNRP-----ANCSHLIRSRN   71 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~l   71 (88)
                      ..|++||.+.+..++.+.|+|++|++++++++ |..|+...     ...+....+.....+..+     ..+.+++.+|+
T Consensus       163 ~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l  241 (265)
T cd06605         163 SSYMAPERIQGNDYSVKSDIWSLGLSLIELAT-GRFPYPPENDPPDGIFELLQYIVNEPPPRLPSGKFSPDFQDFVNLCL  241 (265)
T ss_pred             hhccCHHHHcCCCCCchhhHHHHHHHHHHHHh-CCCCCCccccccccHHHHHHHHhcCCCCCCChhhcCHHHHHHHHHHc
Confidence            36899999888888889999999999999999 88888643     233344444444333333     33566778888


Q ss_pred             hhCcccCCChhhhhh
Q psy8478          72 RLTENKAPSAVSKKR   86 (88)
Q Consensus        72 ~~~~~~rp~~~~~~~   86 (88)
                      ..+|.+||++.++.+
T Consensus       242 ~~~p~~Rpt~~~ll~  256 (265)
T cd06605         242 IKDPRERPSYKELLE  256 (265)
T ss_pred             CCCchhCcCHHHHhh
Confidence            899999999998864

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=99.51  E-value=1.2e-13  Score=75.23  Aligned_cols=83  Identities=19%  Similarity=0.373  Sum_probs=58.2

Q ss_pred             cccCcchhcc--CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC-----------------------
Q psy8478           3 RWMAPECLVD--GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRL-----------------------   57 (88)
Q Consensus         3 ~~~~pe~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----------------------   57 (88)
                      .|++||.+..  ..++.++|+|++|++++++++ |..||..............+..+                       
T Consensus       173 ~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (327)
T cd08227         173 PWLSPEVLQQNLQGYDAKSDIYSVGITACELAN-GHVPFKDMPATQMLLEKLNGTVPCLLDTTTIPAEELTMKPSRSGAN  251 (327)
T ss_pred             cccChHHhhcccCCCCchhhHHHHHHHHHHHHH-CCCCCCCcchhHHHHHHhcCCccccccccchhhhhcccCCcccCCc
Confidence            4899999875  357889999999999999999 99999754433322211111000                       


Q ss_pred             --------------------------CCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          58 --------------------------NRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        58 --------------------------~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                                                ..+..+.+++.+|++.+|.+|||++++.+
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~ell~  306 (327)
T cd08227         252 SGLGESTTVSTPRPSNGESSSHPYNRTFSPHFHHFVEQCLQRNPDARPSASTLLN  306 (327)
T ss_pred             CCCCcccccCCcCccccCCcccccccccCHHHHHHHHHHHhhCchhcCCHHHHhc
Confidence                                      00112446889999999999999999864

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=99.51  E-value=7.2e-14  Score=74.40  Aligned_cols=84  Identities=18%  Similarity=0.364  Sum_probs=63.8

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCC----CCCChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNR----PANCSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~l~~~~~~   77 (88)
                      ..|++||.+....++.+.|+|++|++++++++ |..|+...........+..+.....    +..+.+++..|+..+|.+
T Consensus       165 ~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~  243 (277)
T cd06642         165 PFWMAPEVIKQSAYDFKADIWSLGITAIELAK-GEPPNSDLHPMRVLFLIPKNSPPTLEGQYSKPFKEFVEACLNKDPRF  243 (277)
T ss_pred             ccccCHHHhCcCCCchhhhHHHHHHHHHHHHh-CCCCCcccchhhHHhhhhcCCCCCCCcccCHHHHHHHHHHccCCccc
Confidence            35899999887778889999999999999999 9999876555554444443333322    234566788888899999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||++.++.+
T Consensus       244 Rp~~~~il~  252 (277)
T cd06642         244 RPTAKELLK  252 (277)
T ss_pred             CcCHHHHHH
Confidence            999999865

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=99.51  E-value=1.2e-13  Score=73.12  Aligned_cols=85  Identities=18%  Similarity=0.309  Sum_probs=61.7

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCH--HHHHHHHHcCCCCCC-----CCCChHHHHHHHhhC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTN--VDVLHYVRGGGRLNR-----PANCSHLIRSRNRLT   74 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~-----~~~~~~~~~~~l~~~   74 (88)
                      ..|++||......++.+.|+|++|++++++++ |..||.+...  .+....+.....++.     +..+.+++.+|+..+
T Consensus       170 ~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~  248 (267)
T cd08229         170 PYYMSPERIHENGYNFKSDIWSLGCLLYEMAA-LQSPFYGDKMNLYSLCKKIEQCDYPPLPSDHYSEELRQLVNMCINPD  248 (267)
T ss_pred             cCccCHHHhcCCCccchhhHHHHHHHHHHHHh-CCCCcccccchHHHHhhhhhcCCCCCCCcccccHHHHHHHHHhcCCC
Confidence            35889999887788889999999999999999 8888865432  333444443322222     234566777788889


Q ss_pred             cccCCChhhhhhc
Q psy8478          75 ENKAPSAVSKKRI   87 (88)
Q Consensus        75 ~~~rp~~~~~~~~   87 (88)
                      |.+|||+.++.+.
T Consensus       249 p~~Rpt~~~i~~~  261 (267)
T cd08229         249 PEKRPDITYVYDV  261 (267)
T ss_pred             cccCCCHHHHHHH
Confidence            9999999987653

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>KOG0615|consensus

Probab=99.51  E-value=1.7e-15  Score=83.35  Aligned_cols=85  Identities=21%  Similarity=0.346  Sum_probs=64.9

Q ss_pred             CCcccCcchhccCC---CCchhhHHHHHHHHHHHHhcCCCCCCCCCH-HHHHHHHHcCCCCC-------CCCCChHHHHH
Q psy8478           1 MTRWMAPECLVDGL---FSSQSDVWAFGVLLWEIMSLGQQPYPARTN-VDVLHYVRGGGRLN-------RPANCSHLIRS   69 (88)
Q Consensus         1 ~~~~~~pe~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~-------~~~~~~~~~~~   69 (88)
                      ++.|.|||++....   +..++|+||+||++|-+++ |.+||..... ..+...|..|....       ..+...+++..
T Consensus       341 TpsYvAPEVl~~kg~~~~~~kVDiWSlGcvLfvcLs-G~pPFS~~~~~~sl~eQI~~G~y~f~p~~w~~Iseea~dlI~~  419 (475)
T KOG0615|consen  341 TPSYVAPEVLASKGVEYYPSKVDIWSLGCVLFVCLS-GYPPFSEEYTDPSLKEQILKGRYAFGPLQWDRISEEALDLINW  419 (475)
T ss_pred             CccccChhheecCCeecccchheeeeccceEEEEec-cCCCcccccCCccHHHHHhcCcccccChhhhhhhHHHHHHHHH
Confidence            47899999998654   3447899999999999999 9999976543 33666676653221       22346678999


Q ss_pred             HHhhCcccCCChhhhhh
Q psy8478          70 RNRLTENKAPSAVSKKR   86 (88)
Q Consensus        70 ~l~~~~~~rp~~~~~~~   86 (88)
                      +|.++|++||++.+.++
T Consensus       420 mL~VdP~~R~s~~eaL~  436 (475)
T KOG0615|consen  420 MLVVDPENRPSADEALN  436 (475)
T ss_pred             hhEeCcccCcCHHHHhc
Confidence            99999999999998764

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=99.50  E-value=6.4e-14  Score=75.56  Aligned_cols=84  Identities=37%  Similarity=0.602  Sum_probs=65.4

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCC----CCCCChHHHHHHHhhCcccC
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLN----RPANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~l~~~~~~r   78 (88)
                      .|++||.+....++.++|+|++|++++++++.|..||.+....+....+..+....    .+..+.+++.+|+..+|.+|
T Consensus       188 ~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  267 (303)
T cd05088         188 RWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYRLEKPLNCDDEVYDLMRQCWREKPYER  267 (303)
T ss_pred             cccCHHHHhccCCcccccchhhhhHHHHHHhcCCCCcccCChHHHHHHHhcCCcCCCCCCCCHHHHHHHHHHcCCChhhC
Confidence            48999988777778899999999999999865888988777666666665543332    23445677888888999999


Q ss_pred             CChhhhhh
Q psy8478          79 PSAVSKKR   86 (88)
Q Consensus        79 p~~~~~~~   86 (88)
                      |++.++.+
T Consensus       268 p~~~~il~  275 (303)
T cd05088         268 PSFAQILV  275 (303)
T ss_pred             cCHHHHHH
Confidence            99998865

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=99.50  E-value=2.2e-13  Score=72.80  Aligned_cols=84  Identities=21%  Similarity=0.423  Sum_probs=64.0

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCC------CCCCChHHHHHHHhhCc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLN------RPANCSHLIRSRNRLTE   75 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~l~~~~   75 (88)
                      ..|++||.+....++.+.|+|++|++++++++ |..|+...+.......+.......      .+..+.+++..|+..+|
T Consensus       180 ~~y~~PE~~~~~~~~~~~Dv~slGvil~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p  258 (286)
T cd06614         180 PYWMAPEVIKRKDYGPKVDIWSLGIMCIEMAE-GEPPYLREPPLRALFLITTKGIPPLKNPEKWSPEFKDFLNKCLVKDP  258 (286)
T ss_pred             cccCCHhHhcCCCCCCccccHHHHHHHHHHHh-CCCCCCCCCHHHHHHHHHhcCCCCCcchhhCCHHHHHHHHHHhccCh
Confidence            35899998877778889999999999999999 999998766554444443322221      23446677888999999


Q ss_pred             ccCCChhhhhh
Q psy8478          76 NKAPSAVSKKR   86 (88)
Q Consensus        76 ~~rp~~~~~~~   86 (88)
                      .+||++.++++
T Consensus       259 ~~Rpt~~~il~  269 (286)
T cd06614         259 EKRPSAEELLQ  269 (286)
T ss_pred             hhCcCHHHHhh
Confidence            99999999864

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>PHA02882 putative serine/threonine kinase; Provisional

Probab=99.50  E-value=1.5e-13  Score=73.92  Aligned_cols=85  Identities=12%  Similarity=0.140  Sum_probs=63.6

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCC-HHH--------HHHHHHcCC--CCCCCCCChHHHHHH
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPART-NVD--------VLHYVRGGG--RLNRPANCSHLIRSR   70 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--------~~~~i~~~~--~~~~~~~~~~~~~~~   70 (88)
                      +.|++||...+..++.++|+||+|++++++++ |..||.+.. ...        ....+..+.  ....+..+.+.+..|
T Consensus       197 ~~y~ape~~~~~~~~~~~DiwSlG~~l~el~~-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (294)
T PHA02882        197 LYYAGLDAHNGACVTRRGDLESLGYCMLKWAG-IKLPWKGFGHNGNLIHAAKCDFIKRLHEGKIKIKNANKFIYDFIECV  275 (294)
T ss_pred             ccccCHHHhCCCCCCcHHHHHHHHHHHHHHHh-CCCCCCccccchHHHHHhHHHHHHHhhhhhhccCCCCHHHHHHHHHH
Confidence            56899998888888999999999999999999 999997652 221        122232221  123345566788889


Q ss_pred             HhhCcccCCChhhhhhc
Q psy8478          71 NRLTENKAPSAVSKKRI   87 (88)
Q Consensus        71 l~~~~~~rp~~~~~~~~   87 (88)
                      +..++.+||++.++.++
T Consensus       276 ~~~~~~~rp~~~~l~~~  292 (294)
T PHA02882        276 TKLSYEEKPDYDALIKI  292 (294)
T ss_pred             HhCCCCCCCCHHHHHHh
Confidence            99999999999999875

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=99.50  E-value=1.9e-13  Score=71.97  Aligned_cols=84  Identities=20%  Similarity=0.360  Sum_probs=65.9

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCC----CCCChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNR----PANCSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~l~~~~~~   77 (88)
                      +.|++||.+.+..++.++|+|++|++++++++ |..||......+....+..+...+.    +..+.+++.+|+..+|.+
T Consensus       165 ~~y~ape~~~~~~~~~~~Dv~slG~i~~~l~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~  243 (256)
T cd08221         165 PYYMSPELCQGVKYNFKSDIWALGCVLYELLT-LKRTFDATNPLNLVVKIVQGNYTPVVSVYSSELISLVHSLLQQDPEK  243 (256)
T ss_pred             ccccCHhhcCCCCCCCcchhHHHHHHHHHHHH-CCCCCCCCCHHHHHHHHHcCCCCCCccccCHHHHHHHHHHcccCccc
Confidence            46889998877677788999999999999999 9899987777776666655543333    334567778888888999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||++.++.+
T Consensus       244 R~s~~~ll~  252 (256)
T cd08221         244 RPTADEVLD  252 (256)
T ss_pred             CCCHHHHhh
Confidence            999999865

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=99.50  E-value=2.4e-13  Score=72.02  Aligned_cols=84  Identities=19%  Similarity=0.318  Sum_probs=61.5

Q ss_pred             CcccCcchhcc-----CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCC------CCCCChHHHHHH
Q psy8478           2 TRWMAPECLVD-----GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLN------RPANCSHLIRSR   70 (88)
Q Consensus         2 ~~~~~pe~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~   70 (88)
                      ..|++||.+..     ..++.++|+|++|++++++++ |..||...........+..+....      .+..+.+++..|
T Consensus       177 ~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~  255 (275)
T cd06608         177 PYWMAPEVIACDEQPDASYDARSDVWSLGITAIELAD-GKPPLCDMHPMRALFKIPRNPPPTLKSPENWSKKFNDFISEC  255 (275)
T ss_pred             ccccCHhHhcccccccCCccccccHHHhHHHHHHHHh-CCCCccccchHHHHHHhhccCCCCCCchhhcCHHHHHHHHHH
Confidence            35899998753     235668999999999999999 999997655544444444332221      123456788889


Q ss_pred             HhhCcccCCChhhhhh
Q psy8478          71 NRLTENKAPSAVSKKR   86 (88)
Q Consensus        71 l~~~~~~rp~~~~~~~   86 (88)
                      +..+|++||++.++.+
T Consensus       256 l~~dp~~Rpt~~~ll~  271 (275)
T cd06608         256 LIKNYEQRPFMEELLE  271 (275)
T ss_pred             hhcChhhCcCHHHHhc
Confidence            9999999999999875

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=99.50  E-value=2.1e-13  Score=74.50  Aligned_cols=84  Identities=19%  Similarity=0.269  Sum_probs=60.3

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHH-------------------------------
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHY-------------------------------   50 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------   50 (88)
                      ..|++||.+.+..++.++|+|++|++++++++ |..||......+....                               
T Consensus       166 ~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (333)
T cd06650         166 RSYMSPERLQGTHYSVQSDIWSMGLSLVEMAI-GRYPIPPPDAKELELMFGCPVEGDPAESETSPRPRPPGRPLSSYGPD  244 (333)
T ss_pred             ccccCHHHhcCCCCCcHHHHHHHHHHHHHHHH-CCCCCCCcchhHHHHHhcCcccCCccccccCcccCCccchhhhhccc
Confidence            46899999987788889999999999999999 9888875443322211                               


Q ss_pred             -------------HHcCCCCCC-----CCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          51 -------------VRGGGRLNR-----PANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        51 -------------i~~~~~~~~-----~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                                   +.....+..     +..+.+++.+||..+|.+||+++++.+
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~~P~~Rpt~~ell~  298 (333)
T cd06650         245 SRPPMAIFELLDYIVNEPPPKLPSGVFGAEFQDFVNKCLIKNPAERADLKQLMV  298 (333)
T ss_pred             ccccccHHHHHHHHhcCCCccCCCCCcCHHHHHHHHHhccCCcccCcCHHHHhh
Confidence                         111111111     123457888999999999999999864

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=99.50  E-value=2.5e-13  Score=72.62  Aligned_cols=84  Identities=19%  Similarity=0.389  Sum_probs=61.9

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCH-----------HHHHHHHHcCCCCC-----CCCCChH
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTN-----------VDVLHYVRGGGRLN-----RPANCSH   65 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~i~~~~~~~-----~~~~~~~   65 (88)
                      ..|++||.+....++.++|+|++|++++++++ |..||.....           .+....+.......     .+..+.+
T Consensus       166 ~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (284)
T cd06620         166 STYMSPERIQGGKYTVKSDVWSLGISIIELAL-GKFPFAFSNIDDDGQDDPMGILDLLQQIVQEPPPRLPSSDFPEDLRD  244 (284)
T ss_pred             cccCCHHHHccCCCCccchHHHHHHHHHHHHh-CCCCCcccchhhhhhhhhhHHHHHHHHHhhccCCCCCchhcCHHHHH
Confidence            46889999877778889999999999999999 9999875433           12223333222222     2334567


Q ss_pred             HHHHHHhhCcccCCChhhhhh
Q psy8478          66 LIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        66 ~~~~~l~~~~~~rp~~~~~~~   86 (88)
                      ++..|+..+|.+||++.++.+
T Consensus       245 li~~~l~~dp~~Rpt~~e~~~  265 (284)
T cd06620         245 FVDACLLKDPTERPTPQQLCA  265 (284)
T ss_pred             HHHHHhcCCcccCcCHHHHhc
Confidence            888999999999999999875

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=99.50  E-value=3.5e-13  Score=70.84  Aligned_cols=84  Identities=26%  Similarity=0.411  Sum_probs=67.0

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCC----CCCChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNR----PANCSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~l~~~~~~   77 (88)
                      ..|++||.+....++.++|+|++|+++++++. |..|+......+....+..+.....    +..+.+.+.+|+..+|.+
T Consensus       165 ~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~  243 (256)
T cd08530         165 PHYMAPEVWKGRPYSYKSDIWSLGCLLYEMAT-FAPPFEARSMQDLRYKVQRGKYPPIPPIYSQDLQNFIRSMLQVKPKL  243 (256)
T ss_pred             ccccCHHHHCCCCCCchhhHHHHHHHHHHHHh-CCCCCCCCCHHHHHHHHhcCCCCCCchhhCHHHHHHHHHHcCCCccc
Confidence            46889999887778889999999999999999 9999987777666666655443333    334667888888899999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||++.++++
T Consensus       244 Rp~~~~~l~  252 (256)
T cd08530         244 RPNCDKILA  252 (256)
T ss_pred             CCCHHHHhc
Confidence            999999875

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=99.50  E-value=1.2e-13  Score=74.25  Aligned_cols=84  Identities=21%  Similarity=0.448  Sum_probs=61.8

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC--CC----CCCChHHHHHHHhhCc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRL--NR----PANCSHLIRSRNRLTE   75 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~----~~~~~~~~~~~l~~~~   75 (88)
                      +.|++||.+....++.++|+|++|++++++++ |..||...........+.....+  ..    +..+.+++.+|+..+|
T Consensus       180 ~~y~aPE~~~~~~~~~~~Dv~s~Gvil~~l~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p  258 (296)
T cd06654         180 PYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIE-GEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLDMDV  258 (296)
T ss_pred             ccccCHHHHcCCCCCccchHHHHHHHHHHHHh-CCCCCCCCCHHHhHHHHhcCCCCCCCCccccCHHHHHHHHHHCcCCc
Confidence            46899999887777889999999999999999 99999766554433333222111  11    2335567788899999


Q ss_pred             ccCCChhhhhh
Q psy8478          76 NKAPSAVSKKR   86 (88)
Q Consensus        76 ~~rp~~~~~~~   86 (88)
                      ..||++.++.+
T Consensus       259 ~~Rpt~~eil~  269 (296)
T cd06654         259 EKRGSAKELLQ  269 (296)
T ss_pred             ccCcCHHHHhh
Confidence            99999998865

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=99.50  E-value=1.6e-13  Score=74.05  Aligned_cols=85  Identities=32%  Similarity=0.701  Sum_probs=63.1

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHH-HHHHHcCCCCCC----CCCChHHHHHHHhhCccc
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDV-LHYVRGGGRLNR----PANCSHLIRSRNRLTENK   77 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~----~~~~~~~~~~~l~~~~~~   77 (88)
                      .|++||.+....++.++|+|++|++++++++.|..||......+. ...+..+.....    +..+.+++..|+..+|++
T Consensus       208 ~y~aPE~~~~~~~~~~~DiwslGvil~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~  287 (302)
T cd05055         208 KWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSNPYPGMPVDSKFYKLIKEGYRMAQPEHAPAEIYDIMKTCWDADPLK  287 (302)
T ss_pred             ccCCHhhhccCCCCcHhHHHHHHHHHHHHHhCCCCCcCCCCchHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcCCCchh
Confidence            589999988778888999999999999988657888876554333 333333333322    344567888899999999


Q ss_pred             CCChhhhhhc
Q psy8478          78 APSAVSKKRI   87 (88)
Q Consensus        78 rp~~~~~~~~   87 (88)
                      ||++.++.+.
T Consensus       288 Rpt~~ell~~  297 (302)
T cd05055         288 RPTFKQIVQL  297 (302)
T ss_pred             CcCHHHHHHH
Confidence            9999998653

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=99.50  E-value=1.5e-13  Score=72.89  Aligned_cols=84  Identities=19%  Similarity=0.353  Sum_probs=61.2

Q ss_pred             CcccCcchhcc-----CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC-CC----CCCCCChHHHHHHH
Q psy8478           2 TRWMAPECLVD-----GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG-RL----NRPANCSHLIRSRN   71 (88)
Q Consensus         2 ~~~~~pe~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~----~~~~~~~~~~~~~l   71 (88)
                      ..|++||.+..     ..++.++|+|++|++++++++ |..|+...........+.... +.    ..+..+.+++.+|+
T Consensus       175 ~~y~aPE~~~~~~~~~~~~~~~~Dv~slGv~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l  253 (272)
T cd06637         175 PYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAE-GAPPLCDMHPMRALFLIPRNPAPRLKSKKWSKKFQSFIESCL  253 (272)
T ss_pred             ccccCHhHhccccCcCCCCCchhhHHHHHHHHHHHHh-CCCCccccCHHHHHHHHhcCCCCCCCCCCcCHHHHHHHHHHc
Confidence            35899998752     346778999999999999999 988887655544444333222 11    12345677888899


Q ss_pred             hhCcccCCChhhhhh
Q psy8478          72 RLTENKAPSAVSKKR   86 (88)
Q Consensus        72 ~~~~~~rp~~~~~~~   86 (88)
                      ..+|.+||++.++.+
T Consensus       254 ~~~p~~Rpt~~~il~  268 (272)
T cd06637         254 VKNHSQRPTTEQLMK  268 (272)
T ss_pred             CCChhhCCCHHHHhh
Confidence            999999999999875

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=99.49  E-value=2.4e-13  Score=72.91  Aligned_cols=84  Identities=20%  Similarity=0.388  Sum_probs=61.4

Q ss_pred             CcccCcchhc-----cCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC--CC----CCCChHHHHHH
Q psy8478           2 TRWMAPECLV-----DGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRL--NR----PANCSHLIRSR   70 (88)
Q Consensus         2 ~~~~~pe~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~----~~~~~~~~~~~   70 (88)
                      ..|++||.+.     ...++.++|+|++|++++++++ |..|+...+..+....+.....+  ..    +..+.+++.+|
T Consensus       174 ~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~  252 (292)
T cd06644         174 PYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQ-IEPPHHELNPMRVLLKIAKSEPPTLSQPSKWSMEFRDFLKTA  252 (292)
T ss_pred             ccccCceeeccccccCCCCCchhhhHhHHHHHHHHhc-CCCCCccccHHHHHHHHhcCCCccCCCCcccCHHHHHHHHHH
Confidence            4689999874     2345678999999999999999 98998766655544444433222  11    23456788899


Q ss_pred             HhhCcccCCChhhhhh
Q psy8478          71 NRLTENKAPSAVSKKR   86 (88)
Q Consensus        71 l~~~~~~rp~~~~~~~   86 (88)
                      +..+|.+||+++++++
T Consensus       253 l~~~p~~Rp~~~~il~  268 (292)
T cd06644         253 LDKHPETRPSAAQLLE  268 (292)
T ss_pred             hcCCcccCcCHHHHhc
Confidence            9999999999999865

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=99.49  E-value=1.3e-13  Score=74.36  Aligned_cols=82  Identities=22%  Similarity=0.381  Sum_probs=63.4

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC-CC-----CCCCCChHHHHHHHhhCcc
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG-RL-----NRPANCSHLIRSRNRLTEN   76 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~-----~~~~~~~~~~~~~l~~~~~   76 (88)
                      .|++||.+....++.++|+|++|++++++++ |..||.+....+....+..+. ..     ..+..+.+++.+|+..+|.
T Consensus       181 ~y~aPE~~~~~~~~~~~Di~slG~vl~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~  259 (305)
T cd05609         181 EYIAPEVILRQGYGKPVDWWAMGIILYEFLV-GCVPFFGDTPEELFGQVISDDIEWPEGDEALPADAQDLISRLLRQNPL  259 (305)
T ss_pred             cccCchhccCCCCCchhhHHHHHHHHHHHHh-CCCCCCCCCHHHHHHHHHhcccCCCCccccCCHHHHHHHHHHhccChh
Confidence            5889999877778889999999999999999 999998877777776665432 11     1234466788899999999


Q ss_pred             cCCChhhhh
Q psy8478          77 KAPSAVSKK   85 (88)
Q Consensus        77 ~rp~~~~~~   85 (88)
                      +||+..++.
T Consensus       260 ~R~~~~~~~  268 (305)
T cd05609         260 ERLGTGGAF  268 (305)
T ss_pred             hccCccCHH
Confidence            999854443

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=99.49  E-value=2.7e-13  Score=73.42  Aligned_cols=83  Identities=22%  Similarity=0.391  Sum_probs=64.7

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC-CCC----CCCCChHHHHHHHhhCccc
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG-RLN----RPANCSHLIRSRNRLTENK   77 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~----~~~~~~~~~~~~l~~~~~~   77 (88)
                      .|++||.+.+..++.++|+|++|++++++++ |..||.+.........+.... ..+    .+..+.+++.+|+..+|.+
T Consensus       197 ~y~aPE~~~~~~~~~~~Di~slG~ll~~l~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~  275 (316)
T cd05574         197 EYIAPEVISGDGHGSAVDWWTLGILLYEMLY-GTTPFKGSNRDETFSNILKKEVTFPGSPPVSSSARDLIRKLLVKDPSK  275 (316)
T ss_pred             CCcCHHHHcCCCCCchHHHHHHHHHHHHHhh-CCCCCCCCchHHHHHHHhcCCccCCCccccCHHHHHHHHHHccCCHhH
Confidence            5899999987778889999999999999999 999998776665555544322 111    2445678888999999999


Q ss_pred             CCC----hhhhhh
Q psy8478          78 APS----AVSKKR   86 (88)
Q Consensus        78 rp~----~~~~~~   86 (88)
                      ||+    ++++++
T Consensus       276 R~s~~~~~~~ll~  288 (316)
T cd05574         276 RLGSKRGAAEIKQ  288 (316)
T ss_pred             CCCchhhHHHHHc
Confidence            999    888765

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=99.49  E-value=1.4e-13  Score=72.60  Aligned_cols=85  Identities=21%  Similarity=0.287  Sum_probs=65.0

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCC---C----CCCCCChHHHHHHHhhC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGR---L----NRPANCSHLIRSRNRLT   74 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~----~~~~~~~~~~~~~l~~~   74 (88)
                      ..|++||.+.+..++.+.|+|++|++++++++ |..||......+....+..+..   .    ..+..+.+++.+|+..+
T Consensus       157 ~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~  235 (260)
T cd05611         157 PDYLAPETILGVGDDKMSDWWSLGCVIFEFLF-GYPPFHAETPDAVFDNILSRRINWPEEVKEFCSPEAVDLINRLLCMD  235 (260)
T ss_pred             cCccChhhhcCCCCcchhhhHHHHHHHHHHHH-CCCCCCCCCHHHHHHHHHhcccCCCCcccccCCHHHHHHHHHHccCC
Confidence            45889999877777889999999999999999 9999987777666655543321   1    13455677888999999


Q ss_pred             cccCCChhhhhhc
Q psy8478          75 ENKAPSAVSKKRI   87 (88)
Q Consensus        75 ~~~rp~~~~~~~~   87 (88)
                      |.+||++.++.++
T Consensus       236 p~~R~~~~~~~~~  248 (260)
T cd05611         236 PAKRLGANGYQEI  248 (260)
T ss_pred             HHHccCCCcHHHH
Confidence            9999988766554

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=99.49  E-value=2.9e-14  Score=78.03  Aligned_cols=83  Identities=20%  Similarity=0.319  Sum_probs=65.2

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHc--C-CCCC----CCCCChHHHHHHHhhC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRG--G-GRLN----RPANCSHLIRSRNRLT   74 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~-~~~~----~~~~~~~~~~~~l~~~   74 (88)
                      +.|++||.+....++.++|+|++|++++++++ |..||......+....+..  . ...+    .+..+.+++..|+. +
T Consensus       194 ~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~-g~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~~~~~~~li~~ll~-d  271 (350)
T cd05573         194 PDYIAPEVLRGTPYGLECDWWSLGVILYEMLY-GFPPFYSDTLQETYNKIINWKESLRFPPDPPVSPEAIDLICRLLC-D  271 (350)
T ss_pred             ccccCHHHHcCCCCCCceeeEecchhhhhhcc-CCCCCCCCCHHHHHHHHhccCCcccCCCCCCCCHHHHHHHHHHcc-C
Confidence            56899999988888899999999999999999 9999988776666666654  1 1111    24456678888886 8


Q ss_pred             cccCCC-hhhhhh
Q psy8478          75 ENKAPS-AVSKKR   86 (88)
Q Consensus        75 ~~~rp~-~~~~~~   86 (88)
                      |.+|++ ++++++
T Consensus       272 p~~R~~s~~~ll~  284 (350)
T cd05573         272 PEDRLGSFEEIKS  284 (350)
T ss_pred             hhhcCCCHHHHhc
Confidence            999999 988864

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=99.49  E-value=3.4e-13  Score=71.14  Aligned_cols=84  Identities=21%  Similarity=0.406  Sum_probs=64.2

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCC---CHHHHHHHHHcCCCCCCC-----CCChHHHHHHHhh
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPAR---TNVDVLHYVRGGGRLNRP-----ANCSHLIRSRNRL   73 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~l~~   73 (88)
                      ..|++||.+....++.+.|+|++|++++++++ |..|+...   ...+....+........+     ..+.+.+.+|+..
T Consensus       164 ~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~  242 (264)
T cd06623         164 VTYMSPERIQGESYSYAADIWSLGLTLLECAL-GKFPFLPPGQPSFFELMQAICDGPPPSLPAEEFSPEFRDFISACLQK  242 (264)
T ss_pred             ccccCHhhhCCCCCCchhhHHHHHHHHHHHHh-CCCCCccccccCHHHHHHHHhcCCCCCCCcccCCHHHHHHHHHHccC
Confidence            35789998877777889999999999999999 99998765   444555555544333333     3467778888888


Q ss_pred             CcccCCChhhhhh
Q psy8478          74 TENKAPSAVSKKR   86 (88)
Q Consensus        74 ~~~~rp~~~~~~~   86 (88)
                      ++.+||+++++.+
T Consensus       243 ~p~~R~~~~~ll~  255 (264)
T cd06623         243 DPKKRPSAAELLQ  255 (264)
T ss_pred             ChhhCCCHHHHHh
Confidence            9999999999865

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=99.49  E-value=1.1e-13  Score=73.84  Aligned_cols=84  Identities=18%  Similarity=0.317  Sum_probs=61.9

Q ss_pred             CcccCcchhc-----cCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC--C----CCCCChHHHHHH
Q psy8478           2 TRWMAPECLV-----DGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRL--N----RPANCSHLIRSR   70 (88)
Q Consensus         2 ~~~~~pe~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~----~~~~~~~~~~~~   70 (88)
                      ..|++||.+.     ...++.++|+|++|+++++++. |..||......+....+......  .    .+..+.+++.+|
T Consensus       167 ~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvil~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~  245 (282)
T cd06643         167 PYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAQ-IEPPHHELNPMRVLLKIAKSEPPTLAQPSRWSSEFKDFLKKC  245 (282)
T ss_pred             ccccCHhhccccCCCCCCCCccchhhhHHHHHHHHcc-CCCCccccCHHHHHHHHhhcCCCCCCCccccCHHHHHHHHHH
Confidence            4689999874     2345678999999999999998 88998876665555444333211  1    233567788889


Q ss_pred             HhhCcccCCChhhhhh
Q psy8478          71 NRLTENKAPSAVSKKR   86 (88)
Q Consensus        71 l~~~~~~rp~~~~~~~   86 (88)
                      +..+|.+||++.++.+
T Consensus       246 l~~~p~~Rp~~~~il~  261 (282)
T cd06643         246 LEKNVDARWTTTQLLQ  261 (282)
T ss_pred             ccCChhhCcCHHHHhc
Confidence            9999999999998864

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=99.49  E-value=1e-13  Score=73.07  Aligned_cols=83  Identities=20%  Similarity=0.298  Sum_probs=62.3

Q ss_pred             cccCcchhccC---CCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcC-CCC-------CCCCCChHHHHHHH
Q psy8478           3 RWMAPECLVDG---LFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGG-GRL-------NRPANCSHLIRSRN   71 (88)
Q Consensus         3 ~~~~pe~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~-------~~~~~~~~~~~~~l   71 (88)
                      .|++||.+...   .++.++|+|++|++++++++ |..|+......+....+... ...       ..+..+.+++..|+
T Consensus       166 ~y~~Pe~~~~~~~~~~~~~~Di~slG~~l~~~~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l  244 (262)
T cd06613         166 YWMAPEVAAVERKGGYDGKCDIWALGITAIELAE-LQPPMFDLHPMRALFLISKSNFPPPKLKDKEKWSPVFHDFIKKCL  244 (262)
T ss_pred             cccCchhhcccccCCcCchhhhHHHHHHHHHHHh-CCCCCCCCCHHHHHHHHHhccCCCccccchhhhhHHHHHHHHHHc
Confidence            58999988765   67788999999999999999 99998776655544444322 111       11234667888899


Q ss_pred             hhCcccCCChhhhhh
Q psy8478          72 RLTENKAPSAVSKKR   86 (88)
Q Consensus        72 ~~~~~~rp~~~~~~~   86 (88)
                      ..+|..||++.++++
T Consensus       245 ~~~p~~Rpt~~~il~  259 (262)
T cd06613         245 TKDPKKRPTATKLLQ  259 (262)
T ss_pred             CCChhhCCCHHHHhc
Confidence            999999999999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=99.49  E-value=3.1e-13  Score=71.64  Aligned_cols=83  Identities=20%  Similarity=0.403  Sum_probs=59.2

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHH-cCCCCCCCCCChHHHH---HHHhhCcccC
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVR-GGGRLNRPANCSHLIR---SRNRLTENKA   78 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~---~~l~~~~~~r   78 (88)
                      .|++||.+....++.+.|+|++|++++++++ |..||...........+. ....+..+....+.+.   +++..+|.+|
T Consensus       174 ~y~aPE~~~~~~~~~~~Dv~slG~i~~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~p~~R  252 (266)
T cd06651         174 YWMSPEVISGEGYGRKADVWSLGCTVVEMLT-EKPPWAEYEAMAAIFKIATQPTNPQLPSHISEHARDFLGCIFVEARHR  252 (266)
T ss_pred             cccCHHHhCCCCCCchhhhHHHHHHHHHHHH-CCCCccccchHHHHHHHhcCCCCCCCchhcCHHHHHHHHHhcCChhhC
Confidence            5899999887778889999999999999999 999997665444333332 2223333433333333   4566789999


Q ss_pred             CChhhhhh
Q psy8478          79 PSAVSKKR   86 (88)
Q Consensus        79 p~~~~~~~   86 (88)
                      |+++++++
T Consensus       253 p~~~eil~  260 (266)
T cd06651         253 PSAEELLR  260 (266)
T ss_pred             cCHHHHhc
Confidence            99999875

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=99.49  E-value=2e-13  Score=71.89  Aligned_cols=85  Identities=31%  Similarity=0.638  Sum_probs=65.0

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHc-CCCCCC----CCCChHHHHHHHhhCccc
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRG-GGRLNR----PANCSHLIRSRNRLTENK   77 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~----~~~~~~~~~~~l~~~~~~   77 (88)
                      .|++||.+....++.+.|+|++|++++++++.|..|+......+....+.. ......    |..+.+++..|+..+|.+
T Consensus       165 ~y~~pE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~  244 (257)
T cd05040         165 AWCAPESLRTRTFSHASDVWMFGVTLWEMFTYGEEPWAGLSGSQILKKIDKEGERLERPEACPQDIYNVMLQCWAHNPAD  244 (257)
T ss_pred             eecCHHHhcccCcCchhhhHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCcCCCCccCCHHHHHHHHHHCCCCccc
Confidence            589999988778888999999999999998668889877776666555542 222222    344556777888889999


Q ss_pred             CCChhhhhhc
Q psy8478          78 APSAVSKKRI   87 (88)
Q Consensus        78 rp~~~~~~~~   87 (88)
                      ||++.++.+.
T Consensus       245 Rps~~~~~~~  254 (257)
T cd05040         245 RPTFAALREF  254 (257)
T ss_pred             CCCHHHHHHH
Confidence            9999998753

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=99.49  E-value=1e-14  Score=79.29  Aligned_cols=84  Identities=18%  Similarity=0.364  Sum_probs=66.1

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC---CCCCCCCChHHHHHHHhhCcccC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG---RLNRPANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~~~~~~~~~~l~~~~~~r   78 (88)
                      +.|++||.+....++.++|+|++|++++++++ |..||.+....+....+....   +...+..+.+++..|+..+|.+|
T Consensus       160 ~~y~aPE~~~~~~~~~~~DiwslG~il~el~t-G~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~~~L~~dP~~R  238 (325)
T cd05594         160 PEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMC-GRLPFYNQDHEKLFELILMEEIRFPRTLSPEAKSLLSGLLKKDPKQR  238 (325)
T ss_pred             cccCCHHHHccCCCCCccccccccceeeeecc-CCCCCCCCCHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhhcCHHHh
Confidence            56999999988888899999999999999999 999998877776666664332   11234456778888999999999


Q ss_pred             C-----Chhhhhh
Q psy8478          79 P-----SAVSKKR   86 (88)
Q Consensus        79 p-----~~~~~~~   86 (88)
                      +     ++.++.+
T Consensus       239 ~~~~~~~~~~il~  251 (325)
T cd05594         239 LGGGPDDAKEIMQ  251 (325)
T ss_pred             CCCCCCCHHHHhc
Confidence            7     7777653

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=99.49  E-value=7.7e-14  Score=76.10  Aligned_cols=84  Identities=23%  Similarity=0.324  Sum_probs=65.5

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC----CC-------CCCCCChHHHHHH
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG----RL-------NRPANCSHLIRSR   70 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~----~~-------~~~~~~~~~~~~~   70 (88)
                      +.|++||.+....++.++|+|++|++++++++ |..||......+....+....    .+       ..+..+.+++.+|
T Consensus       162 ~~y~aPE~~~~~~~~~~~DvwslG~il~ell~-g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~s~~~~~li~~~  240 (333)
T cd05600         162 PDYMAPEVLRGKGYDFTVDYWSLGCMLYEFLC-GFPPFSGSTPNETWENLKYWKETLQRPVYDDPRFNLSDEAWDLITKL  240 (333)
T ss_pred             ccccChhHhcCCCCCCccceecchHHHhhhhh-CCCCCCCCCHHHHHHHHHhccccccCCCCCccccccCHHHHHHHHHH
Confidence            56899999988888899999999999999999 999998877766665554321    11       1133456678888


Q ss_pred             HhhCcccCCChhhhhh
Q psy8478          71 NRLTENKAPSAVSKKR   86 (88)
Q Consensus        71 l~~~~~~rp~~~~~~~   86 (88)
                      +...+.+||+++++.+
T Consensus       241 l~~~~~rr~s~~~ll~  256 (333)
T cd05600         241 INDPSRRFGSLEDIKN  256 (333)
T ss_pred             hhChhhhcCCHHHHHh
Confidence            8888999999998864

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=99.49  E-value=5.8e-13  Score=70.33  Aligned_cols=84  Identities=20%  Similarity=0.464  Sum_probs=61.3

Q ss_pred             CcccCcchhccCC---CCchhhHHHHHHHHHHHHhcCCCCCCCCC-HHHHHHHHHcCCCCCCCC------CChHHHHHHH
Q psy8478           2 TRWMAPECLVDGL---FSSQSDVWAFGVLLWEIMSLGQQPYPART-NVDVLHYVRGGGRLNRPA------NCSHLIRSRN   71 (88)
Q Consensus         2 ~~~~~pe~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~------~~~~~~~~~l   71 (88)
                      +.|++||.+....   +..+.|+|++|+++++++. |..||.... .......+..+..+..|.      ...+++..|+
T Consensus       167 ~~~~~PE~~~~~~~~~~~~~~Dv~s~G~il~~l~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l  245 (264)
T cd06626         167 PAYMAPEVITGGKGKGHGRAADIWSLGCVVLEMAT-GKRPWSELDNEFQIMFHVGAGHKPPIPDSLQLSPEGKDFLDRCL  245 (264)
T ss_pred             cCccChhhccCCCCCCCCcccchHHHHHHHHHHHh-CCCCccCCcchHHHHHHHhcCCCCCCCcccccCHHHHHHHHHHc
Confidence            4689999987655   6788999999999999999 999997553 333333333333333333      3457888888


Q ss_pred             hhCcccCCChhhhhh
Q psy8478          72 RLTENKAPSAVSKKR   86 (88)
Q Consensus        72 ~~~~~~rp~~~~~~~   86 (88)
                      ..+|.+||++.++.+
T Consensus       246 ~~~p~~R~~~~~i~~  260 (264)
T cd06626         246 ESDPKKRPTASELLQ  260 (264)
T ss_pred             cCCcccCCCHHHHhc
Confidence            899999999999864

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=99.48  E-value=2e-13  Score=72.58  Aligned_cols=85  Identities=32%  Similarity=0.655  Sum_probs=64.7

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC-CC----CCCCCChHHHHHHHhhCccc
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG-RL----NRPANCSHLIRSRNRLTENK   77 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~----~~~~~~~~~~~~~l~~~~~~   77 (88)
                      .|++||.+....++.+.|+|++|++++++++.|..||...........+..+. ..    ..+..+.+++.+|+..+|.+
T Consensus       183 ~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~p~~  262 (275)
T cd05046         183 RWLAPEAVQEDDFSTKSDVWSFGVLMWEVFTQGELPFYGLSDEEVLNRLQAGKLELPVPEGCPSRLYKLMTRCWAVNPKD  262 (275)
T ss_pred             eecChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCccccchHHHHHHHHcCCcCCCCCCCCCHHHHHHHHHHcCCCccc
Confidence            48999988777778889999999999998876777887666666666555332 11    23445667888888899999


Q ss_pred             CCChhhhhhc
Q psy8478          78 APSAVSKKRI   87 (88)
Q Consensus        78 rp~~~~~~~~   87 (88)
                      ||++.++.+.
T Consensus       263 Rp~~~~~l~~  272 (275)
T cd05046         263 RPSFSELVSA  272 (275)
T ss_pred             CCCHHHHHHH
Confidence            9999998754

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=99.48  E-value=3.1e-13  Score=73.17  Aligned_cols=39  Identities=23%  Similarity=0.578  Sum_probs=33.5

Q ss_pred             CcccCcchhccC-CCCchhhHHHHHHHHHHHHhcCCCCCCC
Q psy8478           2 TRWMAPECLVDG-LFSSQSDVWAFGVLLWEIMSLGQQPYPA   41 (88)
Q Consensus         2 ~~~~~pe~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~   41 (88)
                      +.|++||.+.+. .++.++|+|++|++++++++ |..||..
T Consensus       179 ~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~-g~~~f~~  218 (317)
T cd07868         179 FWYRAPELLLGARHYTKAIDIWAIGCIFAELLT-SEPIFHC  218 (317)
T ss_pred             ccccCCHHHcCCCCcCchhhHHHHHHHHHHHHh-CCCCccC
Confidence            458999998764 57889999999999999999 9888864

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=99.48  E-value=2.3e-13  Score=72.50  Aligned_cols=84  Identities=19%  Similarity=0.358  Sum_probs=63.5

Q ss_pred             CcccCcchhcc-----CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCC------CCCCChHHHHHH
Q psy8478           2 TRWMAPECLVD-----GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLN------RPANCSHLIRSR   70 (88)
Q Consensus         2 ~~~~~pe~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~   70 (88)
                      +.|++||.+..     ..++.++|+|++|++++++++ |..||......+....+..+..+.      .+..+.+++..|
T Consensus       167 ~~y~~PE~~~~~~~~~~~~~~~sDi~slG~il~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~  245 (280)
T cd06611         167 PYWMAPEVVACETFKDNPYDYKADIWSLGITLIELAQ-MEPPHHELNPMRVLLKILKSEPPTLDQPSKWSSSFNDFLKSC  245 (280)
T ss_pred             hhhcCHHHHhhcccCCCCCCccccHHHHHHHHHHHHh-CCCCcccCCHHHHHHHHhcCCCCCcCCcccCCHHHHHHHHHH
Confidence            45889998752     345668999999999999999 999998777666555555443221      234567788899


Q ss_pred             HhhCcccCCChhhhhh
Q psy8478          71 NRLTENKAPSAVSKKR   86 (88)
Q Consensus        71 l~~~~~~rp~~~~~~~   86 (88)
                      +..+|.+||+++++++
T Consensus       246 l~~~p~~Rps~~~il~  261 (280)
T cd06611         246 LVKDPDDRPTAAELLK  261 (280)
T ss_pred             hccChhhCcCHHHHhc
Confidence            9999999999999865

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=99.48  E-value=1.5e-13  Score=75.21  Aligned_cols=85  Identities=35%  Similarity=0.702  Sum_probs=62.0

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHH-HHHHHHcCCCCCCCCC----ChHHHHHHHhhCccc
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVD-VLHYVRGGGRLNRPAN----CSHLIRSRNRLTENK   77 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~----~~~~~~~~l~~~~~~   77 (88)
                      .|++||.+.+..++.++|+|++|++++++++.|..||.+....+ ....+..+.....+..    +.+++..|+..+|.+
T Consensus       240 ~y~aPE~~~~~~~~~~~Di~SlGv~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~  319 (337)
T cd05054         240 KWMAPESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQIDEEFCRRLKEGTRMRAPEYATPEIYSIMLDCWHNNPED  319 (337)
T ss_pred             cccCcHHhcCCCCCccccHHHHHHHHHHHHHcCCCCCCCCCccHHHHHHHhccCCCCCCccCCHHHHHHHHHHccCChhh
Confidence            58999999888888999999999999998865888887644322 3333333333333333    445666777788999


Q ss_pred             CCChhhhhhc
Q psy8478          78 APSAVSKKRI   87 (88)
Q Consensus        78 rp~~~~~~~~   87 (88)
                      ||++.++.+.
T Consensus       320 RPs~~ell~~  329 (337)
T cd05054         320 RPTFSELVEI  329 (337)
T ss_pred             CcCHHHHHHH
Confidence            9999998764

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=99.48  E-value=8.4e-15  Score=79.41  Aligned_cols=81  Identities=20%  Similarity=0.398  Sum_probs=64.5

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCC---CCCCCCChHHHHHHHhhCcccC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGR---LNRPANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~l~~~~~~r   78 (88)
                      +.|++||.+....++.++|+|++|++++++++ |..||......+....+.....   ...+..+.+++..|+..+|.+|
T Consensus       162 ~~y~aPE~~~~~~~~~~~DiwslG~il~el~t-g~~p~~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~~~l~~~P~~R  240 (318)
T cd05582         162 VEYMAPEVVNRRGHTQSADWWSFGVLMFEMLT-GSLPFQGKDRKETMTMILKAKLGMPQFLSPEAQSLLRALFKRNPANR  240 (318)
T ss_pred             hhhcCHHHHcCCCCCCccceeccceEeeeecc-CCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHhhcCHhHc
Confidence            46899999987778889999999999999999 9999988777777766654321   1234456778889999999999


Q ss_pred             CChhh
Q psy8478          79 PSAVS   83 (88)
Q Consensus        79 p~~~~   83 (88)
                      |++.+
T Consensus       241 ~~a~~  245 (318)
T cd05582         241 LGAGP  245 (318)
T ss_pred             CCCCC
Confidence            99544

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=99.48  E-value=2e-13  Score=72.87  Aligned_cols=82  Identities=18%  Similarity=0.278  Sum_probs=60.3

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCH----HHHHHHHHcCCCC----CCCCCChHHHHHHHhh
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTN----VDVLHYVRGGGRL----NRPANCSHLIRSRNRL   73 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~----~~~~~~~~~~~~~l~~   73 (88)
                      ..|++||.+....++.++|+|++|++++++++ |..||.....    .+....+......    ..+....+++..|+..
T Consensus       158 ~~y~aPE~~~~~~~~~~~DvwslGv~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~  236 (277)
T cd05607         158 NGYMAPEILKEEPYSYPVDWFAMGCSIYEMVA-GRTPFKDHKEKVAKEELKRRTLEDEVKFEHQNFTEESKDICRLFLAK  236 (277)
T ss_pred             CCccCHHHHccCCCCCchhHHHHHHHHHHHHh-CCCCCCCCcchhhHHHHHHHhhccccccccccCCHHHHHHHHHHhcc
Confidence            57899999988788899999999999999999 9999865322    2222333222111    2344567888899999


Q ss_pred             CcccCCChhhh
Q psy8478          74 TENKAPSAVSK   84 (88)
Q Consensus        74 ~~~~rp~~~~~   84 (88)
                      +|.+||++++.
T Consensus       237 ~P~~R~~~~~~  247 (277)
T cd05607         237 KPEDRLGSREK  247 (277)
T ss_pred             CHhhCCCCccc
Confidence            99999999653

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=99.47  E-value=6.8e-13  Score=70.76  Aligned_cols=84  Identities=26%  Similarity=0.616  Sum_probs=66.1

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCC----ChHHHHHHHhhCcccC
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN----CSHLIRSRNRLTENKA   78 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~l~~~~~~r   78 (88)
                      .|++||......++.+.|+|++|++++++++.|..|+.+....+....+..+...+.+..    +.+.+.+|+..+++.|
T Consensus       176 ~y~~PE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~R  255 (279)
T cd05057         176 KWMALESILHRIYTHKSDVWSYGVTVWELMTFGAKPYEGIPAVEIPDLLEKGERLPQPPICTIDVYMVLVKCWMIDAESR  255 (279)
T ss_pred             cccCHHHhhcCCcCchhhHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHcCCChhhC
Confidence            589999887777888999999999999988658889988777777777766554444443    3455667888889999


Q ss_pred             CChhhhhh
Q psy8478          79 PSAVSKKR   86 (88)
Q Consensus        79 p~~~~~~~   86 (88)
                      |++.++.+
T Consensus       256 p~~~~l~~  263 (279)
T cd05057         256 PTFKELIN  263 (279)
T ss_pred             CCHHHHHH
Confidence            99998764

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=99.47  E-value=1.9e-13  Score=74.78  Aligned_cols=84  Identities=19%  Similarity=0.324  Sum_probs=60.2

Q ss_pred             CcccCcchhcc-CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCC----------------------C-
Q psy8478           2 TRWMAPECLVD-GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGR----------------------L-   57 (88)
Q Consensus         2 ~~~~~pe~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~----------------------~-   57 (88)
                      ..|++||.+.. ..++.++|+|++|++++++++ |..||.+.+..+....+.....                      . 
T Consensus       179 ~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (343)
T cd07878         179 RWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLK-GKALFPGNDYIDQLKRIMEVVGTPSPEVLKKISSEHARKYIQSLPH  257 (343)
T ss_pred             ccccCchHhcCCccCCchhhhHhHHHHHHHHHH-CCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhcchhhHHHHhhcccc
Confidence            46899999876 467889999999999999999 9999976654443333211000                      0 


Q ss_pred             -----------CCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          58 -----------NRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        58 -----------~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                                 ..+..+.+++.+|+..+|.+||++.++++
T Consensus       258 ~~~~~~~~~~~~~~~~~~~li~~mL~~dp~~R~s~~ell~  297 (343)
T cd07878         258 MPQQDLKKIFRGANPLAIDLLEKMLVLDSDKRISASEALA  297 (343)
T ss_pred             ccchhHHHhccCCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence                       01112457888999999999999999864

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=99.47  E-value=6.6e-13  Score=71.13  Aligned_cols=84  Identities=21%  Similarity=0.421  Sum_probs=61.6

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCC-----CHHHHHHHHHcCCCCCC----------CCCChHH
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPAR-----TNVDVLHYVRGGGRLNR----------PANCSHL   66 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~~~~~~~----------~~~~~~~   66 (88)
                      ..|++||.+....++.+.|+|++|++++++++ |..|+...     ...+....+........          +..+.++
T Consensus       167 ~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  245 (287)
T cd06621         167 SFYMAPERIQGKPYSITSDVWSLGLTLLEVAQ-NRFPFPPEGEPPLGPIELLSYIVNMPNPELKDEPGNGIKWSEEFKDF  245 (287)
T ss_pred             ccccCHHHhcCCCCCchhhHHHHHHHHHHHHh-CCCCCCcccCCCCChHHHHHHHhcCCchhhccCCCCCCchHHHHHHH
Confidence            35889998887788889999999999999999 99888754     22333444333221111          1235678


Q ss_pred             HHHHHhhCcccCCChhhhhh
Q psy8478          67 IRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        67 ~~~~l~~~~~~rp~~~~~~~   86 (88)
                      +.+|+..+|.+||++.++.+
T Consensus       246 i~~~l~~~p~~Rpt~~eil~  265 (287)
T cd06621         246 IKQCLEKDPTRRPTPWDMLE  265 (287)
T ss_pred             HHHHcCCCcccCCCHHHHHh
Confidence            88899999999999999865

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=99.47  E-value=2.9e-13  Score=72.08  Aligned_cols=84  Identities=24%  Similarity=0.439  Sum_probs=60.6

Q ss_pred             CcccCcchhcc-CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC-----------------C-------
Q psy8478           2 TRWMAPECLVD-GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG-----------------R-------   56 (88)
Q Consensus         2 ~~~~~pe~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-----------------~-------   56 (88)
                      ..|++||.+.. ..++.++|+|++|++++++++ |..||.+.+..+....+....                 .       
T Consensus       162 ~~y~aPE~~~~~~~~~~~~Di~slGv~l~el~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (282)
T cd07831         162 RWYRAPECLLTDGYYGPKMDIWAVGCVFFEILS-LFPLFPGTNELDQIAKIHDVLGTPDAEVLKKFRKSRHMNYNFPSKK  240 (282)
T ss_pred             cccCChhHhhcCCCCCcchhHHHHHHHHHHHHc-CCcCCCCCCHHHHHHHHHHHcCCCCHHHHHhhcccccccccCcccc
Confidence            35889997654 346778999999999999999 999997766544333322100                 0       


Q ss_pred             --------CCCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          57 --------LNRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        57 --------~~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                              ...+..+.+++.+|+..+|.+||++.++.+
T Consensus       241 ~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~l~  278 (282)
T cd07831         241 GTGLRKLLPNASAEGLDLLKKLLAYDPDERITAKQALR  278 (282)
T ss_pred             cccHHHHcccccHHHHHHHHHHhccCcccccCHHHHhh
Confidence                    012345667888999999999999999875

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=99.47  E-value=1.9e-13  Score=74.37  Aligned_cols=79  Identities=19%  Similarity=0.406  Sum_probs=62.6

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCC---CCCCCCChHHHHHHHhhCcccC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGR---LNRPANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~l~~~~~~r   78 (88)
                      +.|++||.+....++.++|+|++|++++++++ |..||.+.........+.....   ...+..+.+++..++..+|.+|
T Consensus       165 ~~y~aPE~~~~~~~~~~~DiwslGvil~ellt-G~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~~~l~~~p~~R  243 (323)
T cd05615         165 PDYIAPEIIAYQPYGKSVDWWAYGVLLYEMLA-GQPPFDGEDEDELFQSIMEHNVSYPKSLSKEAVSICKGLMTKHPSKR  243 (323)
T ss_pred             ccccCHHHHcCCCCCCccchhhhHHHHHHHHh-CCCCCCCCCHHHHHHHHHhCCCCCCccCCHHHHHHHHHHcccCHhhC
Confidence            46899999988788889999999999999999 9999988877777776654321   1223345567888889999999


Q ss_pred             CCh
Q psy8478          79 PSA   81 (88)
Q Consensus        79 p~~   81 (88)
                      ++.
T Consensus       244 ~~~  246 (323)
T cd05615         244 LGC  246 (323)
T ss_pred             CCC
Confidence            975

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=99.47  E-value=4e-13  Score=71.87  Aligned_cols=84  Identities=27%  Similarity=0.419  Sum_probs=59.5

Q ss_pred             CcccCcchhccC---CCCchhhHHHHHHHHHHHHhcCCCCCCCCCH-HHHHHHHHcCCCCC--------CCCCChHHHHH
Q psy8478           2 TRWMAPECLVDG---LFSSQSDVWAFGVLLWEIMSLGQQPYPARTN-VDVLHYVRGGGRLN--------RPANCSHLIRS   69 (88)
Q Consensus         2 ~~~~~pe~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~--------~~~~~~~~~~~   69 (88)
                      +.|++||.+...   .++.++|+|++|++++++++ |..||..... .+....+..+..+.        .+..+.+++..
T Consensus       171 ~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~  249 (288)
T cd06616         171 RPYMAPERIDPSARDGYDVRSDVWSLGITLYEVAT-GKFPYPKWNSVFDQLTQVVKGDPPILSNSEEREFSPSFVNFINL  249 (288)
T ss_pred             cCccCHHHhccccccCCcchhhhhHHHHHHHHHHh-CCCCchhcchHHHHHhhhcCCCCCcCCCcCCCccCHHHHHHHHH
Confidence            458999988765   57789999999999999999 9999865431 22222222222211        12234678888


Q ss_pred             HHhhCcccCCChhhhhh
Q psy8478          70 RNRLTENKAPSAVSKKR   86 (88)
Q Consensus        70 ~l~~~~~~rp~~~~~~~   86 (88)
                      |+..+|.+||+++++.+
T Consensus       250 ~l~~~p~~Rpt~~~i~~  266 (288)
T cd06616         250 CLIKDESKRPKYKELLE  266 (288)
T ss_pred             HccCChhhCcCHHHHhc
Confidence            99999999999999865

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=99.47  E-value=8e-13  Score=69.78  Aligned_cols=84  Identities=23%  Similarity=0.408  Sum_probs=64.8

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCC----CCChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRP----ANCSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~l~~~~~~   77 (88)
                      +.|++||......++.+.|+|++|++++++++ +..|+...........+..+..+..+    ..+.+++..|+..+|.+
T Consensus       169 ~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~  247 (260)
T cd08222         169 PYYMSPEALKHQGYDSKSDIWSLGCILYEMCC-LAHAFEGQNFLSVVLRIVEGPTPSLPETYSRQLNSIMQSMLNKDPSL  247 (260)
T ss_pred             cCccCHHHHccCCCCchhhHHHHHHHHHHHHh-CCCCCCCccHHHHHHHHHcCCCCCCcchhcHHHHHHHHHHhcCChhh
Confidence            45889998876677788999999999999999 88888766666655555544433333    34556788888899999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||++.++.+
T Consensus       248 Rp~~~~il~  256 (260)
T cd08222         248 RPSAAEILR  256 (260)
T ss_pred             CcCHHHHhh
Confidence            999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=99.47  E-value=2e-13  Score=82.50  Aligned_cols=84  Identities=25%  Similarity=0.527  Sum_probs=63.4

Q ss_pred             CcccCcchhcc--CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCH-HHHHHHHHcCCCCC---CCCCChHHHHHHHhhCc
Q psy8478           2 TRWMAPECLVD--GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTN-VDVLHYVRGGGRLN---RPANCSHLIRSRNRLTE   75 (88)
Q Consensus         2 ~~~~~pe~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~---~~~~~~~~~~~~l~~~~   75 (88)
                      +.|++||.+..  ..++.++|+|++|++++++++ |..||..... ......+......+   .+..+.+++..||..+|
T Consensus       205 p~YmAPEvL~ge~~~~s~KSDVWSLG~ILYELLT-Gk~PF~~~~~~~qli~~lk~~p~lpi~~~S~eL~dLI~~~L~~dP  283 (1021)
T PTZ00266        205 PYYWSPELLLHETKSYDDKSDMWALGCIIYELCS-GKTPFHKANNFSQLISELKRGPDLPIKGKSKELNILIKNLLNLSA  283 (1021)
T ss_pred             ccccCHHHHhccCCCCCchhHHHHHHHHHHHHHH-CCCCCCcCCcHHHHHHHHhcCCCCCcCCCCHHHHHHHHHHhcCCh
Confidence            57999999864  347789999999999999999 9999975543 33344444333222   23457788999999999


Q ss_pred             ccCCChhhhhh
Q psy8478          76 NKAPSAVSKKR   86 (88)
Q Consensus        76 ~~rp~~~~~~~   86 (88)
                      .+||++.++++
T Consensus       284 eeRPSa~QlL~  294 (1021)
T PTZ00266        284 KERPSALQCLG  294 (1021)
T ss_pred             hHCcCHHHHhc
Confidence            99999999864

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=99.47  E-value=8.2e-14  Score=75.67  Aligned_cols=79  Identities=20%  Similarity=0.401  Sum_probs=63.4

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCC----CCChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRP----ANCSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~l~~~~~~   77 (88)
                      +.|++||.+....++.+.|+|++|++++++++ |..||...+..+....+.... ...+    ..+.+++.+++..++.+
T Consensus       160 ~~y~aPE~~~~~~~~~~~DiwslG~il~el~~-g~~pf~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~li~~~l~~~p~~  237 (321)
T cd05603         160 PEYLAPEVLRKEPYDRTVDWWCLGAVLYEMLY-GLPPFYSRDVSQMYDNILHKP-LQLPGGKTVAACDLLVGLLHKDQRR  237 (321)
T ss_pred             cccCCHHHhcCCCCCCcCcccccchhhhhhhc-CCCCCCCCCHHHHHHHHhcCC-CCCCCCCCHHHHHHHHHHccCCHhh
Confidence            46999999988888889999999999999999 999998877776666665442 2222    34567888999999999


Q ss_pred             CCChh
Q psy8478          78 APSAV   82 (88)
Q Consensus        78 rp~~~   82 (88)
                      |+++.
T Consensus       238 R~~~~  242 (321)
T cd05603         238 RLGAK  242 (321)
T ss_pred             cCCCC
Confidence            99864

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=99.47  E-value=3.4e-13  Score=72.88  Aligned_cols=84  Identities=23%  Similarity=0.342  Sum_probs=61.0

Q ss_pred             CcccCcchhcc-CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC----------------------C--
Q psy8478           2 TRWMAPECLVD-GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG----------------------R--   56 (88)
Q Consensus         2 ~~~~~pe~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~----------------------~--   56 (88)
                      +.|++||.+.+ ..++.++|+|++|++++++++ |..||.+....+....+....                      +  
T Consensus       168 ~~y~aPE~~~~~~~~~~~~DiwslG~il~el~t-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (309)
T cd07872         168 LWYRPPDVLLGSSEYSTQIDMWGVGCIFFEMAS-GRPLFPGSTVEDELHLIFRLLGTPTEETWPGISSNDEFKNYNFPKY  246 (309)
T ss_pred             ccccCCHHHhCCCCCCcHHHHHHHHHHHHHHHh-CCCCCCCCChHHHHHHHHHHhCCCCHHHHhhhcchhhhhhhhcCcc
Confidence            46899998865 357889999999999999999 999998766544333321100                      0  


Q ss_pred             ---------CCCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          57 ---------LNRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        57 ---------~~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                               ...+..+.+++.+|+..+|.+|||+.++.+
T Consensus       247 ~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~t~~e~l~  285 (309)
T cd07872         247 KPQPLINHAPRLDTEGIELLTKFLQYESKKRISAEEAMK  285 (309)
T ss_pred             CCCchhhhccCCCHHHHHHHHHhccCChhhCCCHHHHhc
Confidence                     012334567888999999999999999864

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=99.47  E-value=4.8e-13  Score=71.70  Aligned_cols=84  Identities=21%  Similarity=0.315  Sum_probs=61.9

Q ss_pred             CcccCcchhccC-----CCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCC------CCCCChHHHHHH
Q psy8478           2 TRWMAPECLVDG-----LFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLN------RPANCSHLIRSR   70 (88)
Q Consensus         2 ~~~~~pe~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~   70 (88)
                      ..|++||.+...     .++.++|+|++|++++++++ |..|+......+....+..+....      .+..+.+++.+|
T Consensus       192 ~~y~aPE~~~~~~~~~~~~~~~~Di~slGvi~~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~  270 (291)
T cd06639         192 PFWMAPEVIACEQQYDYSYDARCDVWSLGITAIELGD-GDPPLFDMHPVKTLFKIPRNPPPTLLHPEKWCRSFNHFISQC  270 (291)
T ss_pred             ccccChhhhcCCCCcccccCCccchHHHHHHHHHHhh-CCCCCCCCcHHHHHHHHhcCCCCCCCcccccCHHHHHHHHHH
Confidence            358899987543     25678999999999999999 999998766655554544332221      122356788899


Q ss_pred             HhhCcccCCChhhhhh
Q psy8478          71 NRLTENKAPSAVSKKR   86 (88)
Q Consensus        71 l~~~~~~rp~~~~~~~   86 (88)
                      +..+|++||++.++++
T Consensus       271 l~~~p~~Rps~~~il~  286 (291)
T cd06639         271 LIKDFEARPSVTHLLE  286 (291)
T ss_pred             hhcChhhCcCHHHHhc
Confidence            9999999999999865

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.47  E-value=6.6e-13  Score=70.80  Aligned_cols=86  Identities=28%  Similarity=0.424  Sum_probs=62.2

Q ss_pred             CcccCcchhcc-CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC--CCCCCChHHHHHHHhhCcccC
Q psy8478           2 TRWMAPECLVD-GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRL--NRPANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         2 ~~~~~pe~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~l~~~~~~r   78 (88)
                      +.|++||.+.. ..++.++|+|++|+++++++..|..|+......+....+......  +....+.+++.+|+..+|.+|
T Consensus       184 ~~~~aPe~~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~R  263 (274)
T cd05076         184 IPWIAPECVPGGNSLSTAADKWSFGTTLLEICFDGEVPLKERTPSEKERFYEKKHRLPEPSCKELATLISQCLTYEPTQR  263 (274)
T ss_pred             CcccCchhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCccccChHHHHHHHHhccCCCCCCChHHHHHHHHHcccChhhC
Confidence            45899998865 457889999999999999865488888766554443333322222  222346778889999999999


Q ss_pred             CChhhhhhc
Q psy8478          79 PSAVSKKRI   87 (88)
Q Consensus        79 p~~~~~~~~   87 (88)
                      |++.++++.
T Consensus       264 ps~~~il~~  272 (274)
T cd05076         264 PSFRTILRD  272 (274)
T ss_pred             cCHHHHHHh
Confidence            999999763

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=99.47  E-value=3.2e-13  Score=70.91  Aligned_cols=84  Identities=18%  Similarity=0.383  Sum_probs=66.2

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCC----CCChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRP----ANCSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~l~~~~~~   77 (88)
                      +.|++||......++.+.|+|++|+++++++. |..|+......+....+........+    ..+.+.+.+|+..+|.+
T Consensus       167 ~~y~~pe~~~~~~~~~~~Dv~slG~~~~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~  245 (258)
T cd08215         167 PYYLSPELCQNKPYNYKSDIWSLGCVLYELCT-LKHPFEGENLLELALKILKGQYPPIPSQYSSELRNLVSSLLQKDPEE  245 (258)
T ss_pred             ecccChhHhccCCCCccccHHHHHHHHHHHHc-CCCCCCCCcHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcCCChhh
Confidence            35889998877778889999999999999998 99999877777766666554433334    34556777888889999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||++.++++
T Consensus       246 Rp~~~~ll~  254 (258)
T cd08215         246 RPSIAQILQ  254 (258)
T ss_pred             CcCHHHHhc
Confidence            999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=99.47  E-value=4.8e-13  Score=71.95  Aligned_cols=84  Identities=17%  Similarity=0.386  Sum_probs=64.8

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC------CCCCCChHHHHHHHhhCc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRL------NRPANCSHLIRSRNRLTE   75 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------~~~~~~~~~~~~~l~~~~   75 (88)
                      ..|++||.+....++.+.|+|++|++++++++ |..||.+....+....+..+.+.      ..+..+.+++.+|+..+|
T Consensus       180 ~~y~~pE~~~~~~~~~~~Dv~slGvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~P  258 (292)
T cd06657         180 PYWMAPELISRLPYGPEVDIWSLGIMVIEMVD-GEPPYFNEPPLKAMKMIRDNLPPKLKNLHKVSPSLKGFLDRLLVRDP  258 (292)
T ss_pred             ccccCHHHhcCCCCCchhhHHHHHHHHHHHHh-CCCCCCCCCHHHHHHHHHhhCCcccCCcccCCHHHHHHHHHHHhCCc
Confidence            35899998877777889999999999999999 99999877666555555433221      123456677889999999


Q ss_pred             ccCCChhhhhh
Q psy8478          76 NKAPSAVSKKR   86 (88)
Q Consensus        76 ~~rp~~~~~~~   86 (88)
                      .+||++.++++
T Consensus       259 ~~R~~~~~ll~  269 (292)
T cd06657         259 AQRATAAELLK  269 (292)
T ss_pred             ccCcCHHHHhc
Confidence            99999998865

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>KOG0580|consensus

Probab=99.47  E-value=3.4e-13  Score=70.15  Aligned_cols=84  Identities=15%  Similarity=0.277  Sum_probs=71.8

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC---CCCCCCCChHHHHHHHhhCcccC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG---RLNRPANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~~~~~~~~~~l~~~~~~r   78 (88)
                      .-|.+||++.+..++..+|+|++|+++++++. |.+||.+....+....|....   +...+.++.++|..++..+|..|
T Consensus       186 ~dyl~pEmv~~~~hd~~Vd~w~lgvl~yeflv-g~ppFes~~~~etYkrI~k~~~~~p~~is~~a~dlI~~ll~~~p~~r  264 (281)
T KOG0580|consen  186 LDYLPPEMVEGRGHDKFVDLWSLGVLCYEFLV-GLPPFESQSHSETYKRIRKVDLKFPSTISGGAADLISRLLVKNPIER  264 (281)
T ss_pred             cccCCHhhcCCCCccchhhHHHHHHHHHHHHh-cCCchhhhhhHHHHHHHHHccccCCcccChhHHHHHHHHhccCcccc
Confidence            35789999999999999999999999999999 999999888888888886542   33456678889999999999999


Q ss_pred             CChhhhhh
Q psy8478          79 PSAVSKKR   86 (88)
Q Consensus        79 p~~~~~~~   86 (88)
                      ..+.++..
T Consensus       265 ~~l~~v~~  272 (281)
T KOG0580|consen  265 LALTEVMD  272 (281)
T ss_pred             ccHHHHhh
Confidence            99988753

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=99.47  E-value=8.4e-13  Score=69.03  Aligned_cols=84  Identities=20%  Similarity=0.449  Sum_probs=62.6

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCC------CCCChHHHHHHHhhCc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNR------PANCSHLIRSRNRLTE   75 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~l~~~~   75 (88)
                      ..|++||.+....++.+.|+|++|++++++++ |..|+......+.............      +..+.+++..|+..+|
T Consensus       161 ~~~~~PE~~~~~~~~~~~Dv~slG~il~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p  239 (253)
T cd05122         161 PYWMAPEVINGKPYDYKADIWSLGITAIELAE-GKPPYSELPPMKALFKIATNGPPGLRNPEKWSDEFKDFLKKCLQKNP  239 (253)
T ss_pred             CcccCHHHHcCCCCCccccHHHHHHHHHHHHh-CCCCCCCCchHHHHHHHHhcCCCCcCcccccCHHHHHHHHHHccCCh
Confidence            35889999877777788999999999999999 9999876654444444332222111      3345678888888999


Q ss_pred             ccCCChhhhhh
Q psy8478          76 NKAPSAVSKKR   86 (88)
Q Consensus        76 ~~rp~~~~~~~   86 (88)
                      .+||++.++.+
T Consensus       240 ~~R~t~~~~l~  250 (253)
T cd05122         240 EKRPTAEQLLK  250 (253)
T ss_pred             hhCCCHHHHhc
Confidence            99999999875

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=99.46  E-value=1.1e-13  Score=74.10  Aligned_cols=84  Identities=21%  Similarity=0.352  Sum_probs=60.5

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHH---HHHHHHHc----CCCCCCCCCChHHHHHHHhhC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNV---DVLHYVRG----GGRLNRPANCSHLIRSRNRLT   74 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~----~~~~~~~~~~~~~~~~~l~~~   74 (88)
                      ..|++||.+....++.+.|+|++|++++++++ |..||......   +....+..    ......+....+++.+|+..+
T Consensus       165 ~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~  243 (285)
T cd05630         165 VGYMAPEVVKNERYTFSPDWWALGCLLYEMIA-GQSPFQQRKKKIKREEVERLVKEVQEEYSEKFSPDARSLCKMLLCKD  243 (285)
T ss_pred             ccccChHHHcCCCCCCccccHHHHHHHHHHHh-CCCCCCCCCccchHHHHHhhhhhhhhhcCccCCHHHHHHHHHHhhcC
Confidence            46899999988888889999999999999999 99999754321   11222211    111223445677888999999


Q ss_pred             cccCCC-----hhhhhh
Q psy8478          75 ENKAPS-----AVSKKR   86 (88)
Q Consensus        75 ~~~rp~-----~~~~~~   86 (88)
                      |.+||+     ++++.+
T Consensus       244 p~~R~s~~~~~~~~~~~  260 (285)
T cd05630         244 PKERLGCQGGGAREVKE  260 (285)
T ss_pred             HHHccCCCCCchHHHHc
Confidence            999999     666653

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=99.46  E-value=3.5e-13  Score=74.08  Aligned_cols=84  Identities=17%  Similarity=0.315  Sum_probs=61.0

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC---------------------CC---
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG---------------------RL---   57 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---------------------~~---   57 (88)
                      ..|++||.+.+..++.++|+|++|++++++++ |..||...+.......+....                     ..   
T Consensus       181 ~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (353)
T cd07850         181 RYYRAPEVILGMGYKENVDIWSVGCIMGEMIR-GTVLFPGTDHIDQWNKIIEQLGTPSDEFMSRLQPTVRNYVENRPKYA  259 (353)
T ss_pred             ccccCHHHHhCCCCCCchhhHhHHHHHHHHHH-CCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHhhhhhhHHhhcCCCCC
Confidence            35899999988888899999999999999999 999987665433332221100                     00   


Q ss_pred             ----------------------CCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          58 ----------------------NRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        58 ----------------------~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                                            ..+..+.+++..|+..+|.+||++.++++
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~eiL~  310 (353)
T cd07850         260 GYSFEELFPDVLFPPDSESHNKLKASQARDLLSKMLVIDPEKRISVDDALQ  310 (353)
T ss_pred             CcchhhhCcccccCcccccccccchhHHHHHHHHHcCCChhhCcCHHHHhc
Confidence                                  01122457888999999999999999864

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=99.46  E-value=7.6e-13  Score=71.39  Aligned_cols=84  Identities=19%  Similarity=0.314  Sum_probs=59.2

Q ss_pred             CcccCcchhccC-CCCchhhHHHHHHHHHHHHhcCCCCCCCCCH-HHHHHHHHc--CCC---------------------
Q psy8478           2 TRWMAPECLVDG-LFSSQSDVWAFGVLLWEIMSLGQQPYPARTN-VDVLHYVRG--GGR---------------------   56 (88)
Q Consensus         2 ~~~~~pe~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~--~~~---------------------   56 (88)
                      ..|++||.+.+. .++.++|+|++|++++++++ |..||.+... .+.+..+..  +..                     
T Consensus       167 ~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (303)
T cd07869         167 LWYRPPDVLLGSTEYSTCLDMWGVGCIFVEMIQ-GVAAFPGMKDIQDQLERIFLVLGTPNEDTWPGVHSLPHFKPERFTL  245 (303)
T ss_pred             CCCCChHHHcCCCCCCcHHHHHHHHHHHHHHHh-CCCCCCCCccHHHHHHHHHHHhCCCChhhccchhhccccccccccc
Confidence            468999988654 57788999999999999999 9999976432 222222210  000                     


Q ss_pred             ------------CCCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          57 ------------LNRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        57 ------------~~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                                  ...+..+.+++..|+..+|.+|||++++++
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~dli~~mL~~dp~~R~s~~~~l~  287 (303)
T cd07869         246 YSPKNLRQAWNKLSYVNHAEDLASKLLQCFPKNRLSAQAALS  287 (303)
T ss_pred             cCCccHHHHhhccCCChHHHHHHHHHhccCchhccCHHHHhc
Confidence                        001123457889999999999999999864

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=99.46  E-value=1.7e-13  Score=73.38  Aligned_cols=84  Identities=19%  Similarity=0.315  Sum_probs=61.5

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHH----HHHHHcCC---CCCCCCCChHHHHHHHhhC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDV----LHYVRGGG---RLNRPANCSHLIRSRNRLT   74 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~---~~~~~~~~~~~~~~~l~~~   74 (88)
                      ..|++||.+....++.++|+|++|++++++++ |..||.+......    ...+....   ....+..+.+++..|+..+
T Consensus       165 ~~y~aPE~~~~~~~~~~~Diws~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~  243 (285)
T cd05605         165 VGYMAPEVVKNERYTFSPDWWGLGCLIYEMIE-GKSPFRQRKEKVKREEVERRVKEDQEEYSEKFSEAARSICRQLLTKD  243 (285)
T ss_pred             CCccCcHHhcCCCCCccccchhHHHHHHHHHH-CCCCCCCCchhhHHHHHHHHhhhcccccCcccCHHHHHHHHHHccCC
Confidence            46899999987788889999999999999999 9999986554322    22222221   1123445667888899999


Q ss_pred             cccCC-----Chhhhhh
Q psy8478          75 ENKAP-----SAVSKKR   86 (88)
Q Consensus        75 ~~~rp-----~~~~~~~   86 (88)
                      |.+||     +++++++
T Consensus       244 P~~R~~~~~~~~~~l~~  260 (285)
T cd05605         244 PGFRLGCRGEGAEEVKA  260 (285)
T ss_pred             HHHhcCCCCCCHHHHhc
Confidence            99999     7777754

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=99.46  E-value=3.3e-13  Score=72.39  Aligned_cols=85  Identities=38%  Similarity=0.606  Sum_probs=62.2

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhc-CCCCCCCCCHHHHHHHHHcC-----CC--C----CCCCCChHHHHHH
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSL-GQQPYPARTNVDVLHYVRGG-----GR--L----NRPANCSHLIRSR   70 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~-----~~--~----~~~~~~~~~~~~~   70 (88)
                      .|++||.+....++.++|+|++|++++++++. +..|+......+.+..+...     ..  .    ..+..+.+++.+|
T Consensus       197 ~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~c  276 (296)
T cd05051         197 RWMAWESVLLGKFTTKSDVWAFGVTLWEILTLCREQPYEHLTDQQVIENAGHFFRDDGRQIYLPRPPNCPKDIYELMLEC  276 (296)
T ss_pred             eecCHHHhhcCCCCccchhhhhHHHHHHHHhcCCCCCCCCcChHHHHHHHHhccccccccccCCCccCCCHHHHHHHHHH
Confidence            58999998877788899999999999998762 45677665555555544322     11  1    1234567788889


Q ss_pred             HhhCcccCCChhhhhhc
Q psy8478          71 NRLTENKAPSAVSKKRI   87 (88)
Q Consensus        71 l~~~~~~rp~~~~~~~~   87 (88)
                      +..+|.+||++.++.+.
T Consensus       277 l~~~p~~Rpt~~el~~~  293 (296)
T cd05051         277 WRRDEEDRPTFREIHLF  293 (296)
T ss_pred             hccChhcCCCHHHHHHH
Confidence            99999999999999764

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=99.46  E-value=5.9e-13  Score=71.91  Aligned_cols=84  Identities=19%  Similarity=0.380  Sum_probs=63.1

Q ss_pred             CcccCcchhc---cCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCC-----CCCCChHHHHHHHhh
Q psy8478           2 TRWMAPECLV---DGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLN-----RPANCSHLIRSRNRL   73 (88)
Q Consensus         2 ~~~~~pe~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~~~~l~~   73 (88)
                      ..|++||.+.   ...++.++|+|++|++++++++ |..|+...+.......+.....+.     .+..+.+++..|+..
T Consensus       175 ~~y~aPE~~~~~~~~~~~~~sDv~s~G~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~  253 (307)
T cd06607         175 PYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAE-RKPPLFNMNAMSALYHIAQNDSPTLSSNDWSDYFRNFVDSCLQK  253 (307)
T ss_pred             ccccCceeeeccCCCCCCcccchHHHHHHHHHHHc-CCCCCCCccHHHHHHHHhcCCCCCCCchhhCHHHHHHHHHHhcC
Confidence            3689999874   2456778999999999999999 999998777666555554332222     223456788889999


Q ss_pred             CcccCCChhhhhh
Q psy8478          74 TENKAPSAVSKKR   86 (88)
Q Consensus        74 ~~~~rp~~~~~~~   86 (88)
                      +|.+||++.++.+
T Consensus       254 ~p~~Rp~~~~il~  266 (307)
T cd06607         254 IPQDRPSSEELLK  266 (307)
T ss_pred             ChhhCcCHHHHhc
Confidence            9999999999864

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=99.46  E-value=6.8e-13  Score=70.44  Aligned_cols=85  Identities=34%  Similarity=0.657  Sum_probs=64.6

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCC----CCCChHHHHHHHhhCcccC
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNR----PANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~l~~~~~~r   78 (88)
                      .|++||......++.++|+|++|++++++++.|..|+.+....+....+..+.....    +..+.+++.+|+..+|..|
T Consensus       180 ~~~~pe~~~~~~~~~~sDi~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~p~~R  259 (273)
T cd05074         180 KWLALESLADNVYTTHSDVWAFGVTMWEIMTRGQTPYAGVENSEIYNYLIKGNRLKQPPDCLEDVYELMCQCWSPEPKCR  259 (273)
T ss_pred             hhcCHhHHhcCccchhhhhHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcCCChhhC
Confidence            577888887777788999999999999988767888877776666655554433322    3445667778888899999


Q ss_pred             CChhhhhhc
Q psy8478          79 PSAVSKKRI   87 (88)
Q Consensus        79 p~~~~~~~~   87 (88)
                      |++.++.+.
T Consensus       260 ps~~~~~~~  268 (273)
T cd05074         260 PSFQHLRDQ  268 (273)
T ss_pred             cCHHHHHHH
Confidence            999998753

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>KOG0595|consensus

Probab=99.46  E-value=5.1e-13  Score=73.55  Aligned_cols=81  Identities=25%  Similarity=0.538  Sum_probs=60.6

Q ss_pred             CCcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC-C-CCCC----ChHHHHHHHhhC
Q psy8478           1 MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRL-N-RPAN----CSHLIRSRNRLT   74 (88)
Q Consensus         1 ~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~-~~~~----~~~~~~~~l~~~   74 (88)
                      ++.|||||++....|..++|+|++|+++|+++. |..||......++...+..+... + .+..    +.+++..++..+
T Consensus       177 SplYMAPEV~~~~~YdAKADLWSiG~Ilyq~l~-g~~Pf~a~t~~eL~~~~~k~~~~~~~~~~~~s~~~~~Ll~~ll~~~  255 (429)
T KOG0595|consen  177 SPLYMAPEVIMSQQYDAKADLWSIGTILYQCLT-GKPPFDAETPKELLLYIKKGNEIVPVLPAELSNPLRELLISLLQRN  255 (429)
T ss_pred             CccccCHHHHHhccccchhhHHHHHHHHHHHHh-CCCCccccCHHHHHHHHhccccccCchhhhccCchhhhhhHHHhcC
Confidence            478999999999999999999999999999999 99999999999998888765422 1 2222    224445555555


Q ss_pred             cccCCChh
Q psy8478          75 ENKAPSAV   82 (88)
Q Consensus        75 ~~~rp~~~   82 (88)
                      +..|-+..
T Consensus       256 ~~~~~~~~  263 (429)
T KOG0595|consen  256 PKDRISFE  263 (429)
T ss_pred             ccccCchH
Confidence            55554433

>KOG0690|consensus

Probab=99.46  E-value=1.4e-13  Score=74.76  Aligned_cols=79  Identities=19%  Similarity=0.396  Sum_probs=63.8

Q ss_pred             CCcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC---CCCCCCCChHHHHHHHhhCccc
Q psy8478           1 MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG---RLNRPANCSHLIRSRNRLTENK   77 (88)
Q Consensus         1 ~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~~~~~~~~~~l~~~~~~   77 (88)
                      ++-|+|||++.+.-|+..+|+|++|+++|+++. |..||...++..+...|....   +......+..++..+|.++|.+
T Consensus       331 TPEYLAPEVleDnDYgraVDWWG~GVVMYEMmC-GRLPFyn~dh~kLFeLIl~ed~kFPr~ls~eAktLLsGLL~kdP~k  409 (516)
T KOG0690|consen  331 TPEYLAPEVLEDNDYGRAVDWWGVGVVMYEMMC-GRLPFYNKDHEKLFELILMEDLKFPRTLSPEAKTLLSGLLKKDPKK  409 (516)
T ss_pred             ChhhcCchhhccccccceeehhhhhHHHHHHHh-ccCcccccchhHHHHHHHhhhccCCccCCHHHHHHHHHHhhcChHh
Confidence            467999999999999999999999999999999 999999999888888875432   2223445566777788888888


Q ss_pred             CCC
Q psy8478          78 APS   80 (88)
Q Consensus        78 rp~   80 (88)
                      |..
T Consensus       410 RLG  412 (516)
T KOG0690|consen  410 RLG  412 (516)
T ss_pred             hcC
Confidence            864

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=99.45  E-value=5.1e-13  Score=72.24  Aligned_cols=84  Identities=18%  Similarity=0.355  Sum_probs=61.7

Q ss_pred             CcccCcchhcc---CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCC-----CCCCChHHHHHHHhh
Q psy8478           2 TRWMAPECLVD---GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLN-----RPANCSHLIRSRNRL   73 (88)
Q Consensus         2 ~~~~~pe~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~~~~l~~   73 (88)
                      ..|++||.+..   ..++.++|+|++|++++++++ |..|+......+....+..+..+.     .+..+.+++.+|+..
T Consensus       175 ~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~  253 (308)
T cd06634         175 PYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAE-RKPPLFNMNAMSALYHIAQNESPALQSGHWSEYFRNFVDSCLQK  253 (308)
T ss_pred             ccccCHHHHhhcccCCCCcccchHHHHHHHHHHHc-CCCCCccccHHHHHHHHhhcCCCCcCcccccHHHHHHHHHHhhC
Confidence            46899998742   346778999999999999999 988887665555444444333221     233456778889999


Q ss_pred             CcccCCChhhhhh
Q psy8478          74 TENKAPSAVSKKR   86 (88)
Q Consensus        74 ~~~~rp~~~~~~~   86 (88)
                      +|.+||++.++++
T Consensus       254 ~P~~Rp~~~~ll~  266 (308)
T cd06634         254 IPQDRPTSEVLLK  266 (308)
T ss_pred             CcccCCCHHHHhh
Confidence            9999999998865

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>KOG0983|consensus

Probab=99.45  E-value=4.9e-13  Score=71.14  Aligned_cols=84  Identities=25%  Similarity=0.406  Sum_probs=66.1

Q ss_pred             CcccCcchhcc---CCCCchhhHHHHHHHHHHHHhcCCCCCCCC-CHHHHHHHHHcCCCCCCCC------CChHHHHHHH
Q psy8478           2 TRWMAPECLVD---GLFSSQSDVWAFGVLLWEIMSLGQQPYPAR-TNVDVLHYVRGGGRLNRPA------NCSHLIRSRN   71 (88)
Q Consensus         2 ~~~~~pe~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~------~~~~~~~~~l   71 (88)
                      +.||+||.+-.   .+|...+|+||+|+.++++.+ |+.||.+. ...+.+..+.+..++..+.      .+.+++..||
T Consensus       255 ~~YMaPERidp~~~~kYDiRaDVWSlGITlveLaT-g~yPy~~c~tdFe~ltkvln~ePP~L~~~~gFSp~F~~fv~~CL  333 (391)
T KOG0983|consen  255 AAYMAPERIDPPDKPKYDIRADVWSLGITLVELAT-GQYPYKGCKTDFEVLTKVLNEEPPLLPGHMGFSPDFQSFVKDCL  333 (391)
T ss_pred             ccccCccccCCCCCCccchhhhhhhhccchhhhhc-ccCCCCCCCccHHHHHHHHhcCCCCCCcccCcCHHHHHHHHHHh
Confidence            46899998864   368889999999999999999 99999875 3567788887766554443      3456777888


Q ss_pred             hhCcccCCChhhhhh
Q psy8478          72 RLTENKAPSAVSKKR   86 (88)
Q Consensus        72 ~~~~~~rp~~~~~~~   86 (88)
                      .++..+||...++.+
T Consensus       334 ~kd~r~RP~Y~~Ll~  348 (391)
T KOG0983|consen  334 TKDHRKRPKYNKLLE  348 (391)
T ss_pred             hcCcccCcchHHHhc
Confidence            999999998877654

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=99.45  E-value=4.8e-13  Score=71.19  Aligned_cols=83  Identities=18%  Similarity=0.442  Sum_probs=61.3

Q ss_pred             cccCcchhccC-CCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCC-----CCCCChHHHHHHHhhCcc
Q psy8478           3 RWMAPECLVDG-LFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLN-----RPANCSHLIRSRNRLTEN   76 (88)
Q Consensus         3 ~~~~pe~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~~~~l~~~~~   76 (88)
                      .|++||.+... .++.+.|+|++|++++++++ |..||...........+.....+.     .+..+.+++..|+..+|.
T Consensus       166 ~y~aPE~~~~~~~~~~~~Dv~slG~~l~~ll~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~  244 (277)
T cd06917         166 YWMAPEVITEGKYYDTKADIWSLGITIYEMAT-GNPPYSDVDAFRAMMLIPKSKPPRLEDNGYSKLLREFVAACLDEEPK  244 (277)
T ss_pred             ceeCHHHhccCCccccchhHHHHHHHHHHHHh-CCCCCCCCChhhhhhccccCCCCCCCcccCCHHHHHHHHHHcCCCcc
Confidence            58899987653 46788999999999999999 999998766554443333222222     233466788889999999


Q ss_pred             cCCChhhhhh
Q psy8478          77 KAPSAVSKKR   86 (88)
Q Consensus        77 ~rp~~~~~~~   86 (88)
                      +||++.++.+
T Consensus       245 ~R~~~~~il~  254 (277)
T cd06917         245 ERLSAEELLK  254 (277)
T ss_pred             cCcCHHHHhh
Confidence            9999998864

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=99.45  E-value=3.5e-13  Score=75.35  Aligned_cols=86  Identities=35%  Similarity=0.733  Sum_probs=63.6

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCH-HHHHHHHHcCCCCCCCC----CChHHHHHHHhhCcc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTN-VDVLHYVRGGGRLNRPA----NCSHLIRSRNRLTEN   76 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~----~~~~~~~~~l~~~~~   76 (88)
                      +.|++||.+.+..++.++|+|++|++++++++.|..|+..... ......+..+.+...+.    .+.+++.+|+..+|+
T Consensus       303 ~~y~aPE~~~~~~~~~~~DiwSlGvil~ellt~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~  382 (400)
T cd05105         303 VKWMAPESIFDNLYTTLSDVWSYGILLWEIFSLGGTPYPGMIVDSTFYNKIKSGYRMAKPDHATQEVYDIMVKCWNSEPE  382 (400)
T ss_pred             cceEChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCcccchhHHHHHHHhcCCCCCCCccCCHHHHHHHHHHCccCHh
Confidence            3589999988778888999999999999988657788865433 33334445444443333    455677788889999


Q ss_pred             cCCChhhhhhc
Q psy8478          77 KAPSAVSKKRI   87 (88)
Q Consensus        77 ~rp~~~~~~~~   87 (88)
                      +||++.++.++
T Consensus       383 ~RPt~~~l~~~  393 (400)
T cd05105         383 KRPSFLHLSDI  393 (400)
T ss_pred             HCcCHHHHHHH
Confidence            99999988764

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=99.45  E-value=6e-13  Score=70.99  Aligned_cols=84  Identities=20%  Similarity=0.312  Sum_probs=60.0

Q ss_pred             CcccCcchhccC-CCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcC--------------------------
Q psy8478           2 TRWMAPECLVDG-LFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGG--------------------------   54 (88)
Q Consensus         2 ~~~~~pe~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--------------------------   54 (88)
                      ..|++||.+... .++.++|+|++|++++++++ |..||...........+...                          
T Consensus       163 ~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (283)
T cd07835         163 LWYRAPEILLGSRQYSTPVDIWSIGCIFAEMVN-RRPLFPGDSEIDQLFRIFRTLGTPDEDVWPGVTSLPDYKPTFPKWA  241 (283)
T ss_pred             cCCCCCceeecCcccCcHHHHHHHHHHHHHHHh-CCCCCCCCCHHHHHHHHHHHhCCCChHHhhhhhhchhhhhhccccc
Confidence            358999987654 46788999999999999999 99998765543322221110                          


Q ss_pred             ------CCCCCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          55 ------GRLNRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        55 ------~~~~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                            .....+..+.+++.+|+..+|.+||+++++.+
T Consensus       242 ~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~il~  279 (283)
T cd07835         242 RQDLSKVVPNLDEDGLDLLSKMLVYDPAKRISAKAALQ  279 (283)
T ss_pred             ccchhhhcCCCCHHHHHHHHHHhcCChhhCcCHHHHhc
Confidence                  00112334667889999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=99.45  E-value=8.1e-13  Score=70.51  Aligned_cols=84  Identities=19%  Similarity=0.248  Sum_probs=59.1

Q ss_pred             CcccCcchhccC-CCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC-------------------------
Q psy8478           2 TRWMAPECLVDG-LFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG-------------------------   55 (88)
Q Consensus         2 ~~~~~pe~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-------------------------   55 (88)
                      +.|++||.+... .++.+.|+|++|++++++++ |..||.+.........+....                         
T Consensus       165 ~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~t-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (285)
T cd07861         165 LWYRAPEVLLGSPRYSTPVDIWSIGTIFAEMAT-KKPLFHGDSEIDQLFRIFRILGTPTEDVWPGVTSLPDYKNTFPKWK  243 (285)
T ss_pred             ccccChHHhcCCCCcCcHHHHHHHHHHHHHHHH-CCCCCCCCCHHHHHHHHHHHhCCCChhhhhcchhhHHHHhhccccC
Confidence            468999987654 46788999999999999999 988987654332222111000                         


Q ss_pred             -------CCCCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          56 -------RLNRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        56 -------~~~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                             ....+..+.+++.+|+..+|.+||++.++.+
T Consensus       244 ~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~~ll~  281 (285)
T cd07861         244 KGSLRSAVKNLDEDGLDLLEKMLIYDPAKRISAKKALN  281 (285)
T ss_pred             cchhHHhcCCCCHHHHHHHHHHhcCChhhCCCHHHHhc
Confidence                   0112334457899999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=99.45  E-value=6.7e-13  Score=71.71  Aligned_cols=83  Identities=18%  Similarity=0.264  Sum_probs=62.0

Q ss_pred             cccCcchhcc-CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC------------------------
Q psy8478           3 RWMAPECLVD-GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRL------------------------   57 (88)
Q Consensus         3 ~~~~pe~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------------------------   57 (88)
                      .|++||.+.+ ..++.+.|+|++|++++++++ |..||.+.+..+....+.+....                        
T Consensus       173 ~y~aPE~~~~~~~~~~~~DvwslG~il~el~~-g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (309)
T cd07845         173 WYRAPELLLGCTTYTTAIDMWAVGCILAELLA-HKPLLPGKSEIEQLDLIIQLLGTPNESIWPGFSDLPLVGKFTLPKQP  251 (309)
T ss_pred             cccChhhhcCCCCcCchHHHHHHHHHHHHHHh-CCCCCCCCCHHHHHHHHHHhcCCCChhhchhhhcccccccccccCCC
Confidence            5899998865 357789999999999999999 99999877766655544321000                        


Q ss_pred             ---------CCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          58 ---------NRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        58 ---------~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                               ..+....+++.+|+..+|++||+++++++
T Consensus       252 ~~~~~~~~~~~~~~~~~li~~ml~~dp~~R~t~~~il~  289 (309)
T cd07845         252 YNNLKHKFPWLSEAGLRLLNFLLMYDPKKRATAEEALE  289 (309)
T ss_pred             CCchHHhccccCHHHHHHHHHHhcCChhhCcCHHHHhc
Confidence                     01223456888999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>KOG4279|consensus

Probab=99.45  E-value=2.2e-14  Score=84.05  Aligned_cols=85  Identities=22%  Similarity=0.347  Sum_probs=61.1

Q ss_pred             CCcccCcchhccC--CCCchhhHHHHHHHHHHHHhcCCCCCCCCC-HHHHHHHH-HcCCCCCCCCCCh----HHHHHHHh
Q psy8478           1 MTRWMAPECLVDG--LFSSQSDVWAFGVLLWEIMSLGQQPYPART-NVDVLHYV-RGGGRLNRPANCS----HLIRSRNR   72 (88)
Q Consensus         1 ~~~~~~pe~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i-~~~~~~~~~~~~~----~~~~~~l~   72 (88)
                      +.+|||||++-.+  .|+..+|+||+||...++.+ |++||.... +.....++ .-...++.|+.++    +++..|..
T Consensus       739 TLQYMAPEvIDqG~RGYG~aADIWS~GCT~vEMAT-GrPPF~ElgspqAAMFkVGmyKvHP~iPeelsaeak~FilrcFe  817 (1226)
T KOG4279|consen  739 TLQYMAPEVIDQGPRGYGKAADIWSFGCTMVEMAT-GRPPFVELGSPQAAMFKVGMYKVHPPIPEELSAEAKNFILRCFE  817 (1226)
T ss_pred             chhhhChHhhccCCcCCCchhhhhhccceeEeecc-CCCCeeecCChhHhhhhhcceecCCCCcHHHHHHHHHHHHHHcC
Confidence            3689999999754  68999999999999999999 999997432 22222222 1122456676654    55556666


Q ss_pred             hCcccCCChhhhhh
Q psy8478          73 LTENKAPSAVSKKR   86 (88)
Q Consensus        73 ~~~~~rp~~~~~~~   86 (88)
                      .++.+||+|.++++
T Consensus       818 pd~~~R~sA~~LL~  831 (1226)
T KOG4279|consen  818 PDPCDRPSAKDLLQ  831 (1226)
T ss_pred             CCcccCccHHHhcc
Confidence            77899999998764

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=99.45  E-value=1.1e-12  Score=71.18  Aligned_cols=84  Identities=18%  Similarity=0.374  Sum_probs=62.9

Q ss_pred             CcccCcchhc---cCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCC-----CCCCChHHHHHHHhh
Q psy8478           2 TRWMAPECLV---DGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLN-----RPANCSHLIRSRNRL   73 (88)
Q Consensus         2 ~~~~~pe~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~~~~l~~   73 (88)
                      ..|++||.+.   ...++.++|+|++|++++++++ |..||...........+..+....     .+..+.+++.+|+..
T Consensus       185 ~~y~aPE~~~~~~~~~~~~~~Dv~slGvil~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~  263 (317)
T cd06635         185 PYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAE-RKPPLFNMNAMSALYHIAQNESPTLQSNEWSDYFRNFVDSCLQK  263 (317)
T ss_pred             ccccChhhhhcCCCCCCCccccHHHHHHHHHHHHh-CCCCCCCccHHHHHHHHHhccCCCCCCccccHHHHHHHHHHccC
Confidence            3589999874   3456778999999999999999 999987766666666554433222     122356778889999


Q ss_pred             CcccCCChhhhhh
Q psy8478          74 TENKAPSAVSKKR   86 (88)
Q Consensus        74 ~~~~rp~~~~~~~   86 (88)
                      +|.+||++.++.+
T Consensus       264 ~p~~Rpt~~~il~  276 (317)
T cd06635         264 IPQDRPTSEELLK  276 (317)
T ss_pred             CcccCcCHHHHHh
Confidence            9999999999875

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=99.45  E-value=4.8e-13  Score=73.00  Aligned_cols=78  Identities=22%  Similarity=0.455  Sum_probs=56.9

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCC--------HHH-HHHHHHcCCCCCCC----CCChHHHH
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPART--------NVD-VLHYVRGGGRLNRP----ANCSHLIR   68 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~-~~~~i~~~~~~~~~----~~~~~~~~   68 (88)
                      ..|++||.+.+..++.++|+|++|++++++++ |..||....        ..+ ..+.+... ....|    ..+.+++.
T Consensus       160 ~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~li~  237 (329)
T cd05588         160 PNYIAPEILRGEDYGFSVDWWALGVLMFEMMA-GRSPFDIVGMSDNPDQNTEDYLFQVILEK-QIRIPRSLSVKASSVLK  237 (329)
T ss_pred             ccccCHHHHcCCCCCCccceechHHHHHHHHH-CCCCcccccccccccccchHHHHHHHHcC-CCCCCCCCCHHHHHHHH
Confidence            46899999988888889999999999999999 999985311        111 23333332 22233    34557888


Q ss_pred             HHHhhCcccCCCh
Q psy8478          69 SRNRLTENKAPSA   81 (88)
Q Consensus        69 ~~l~~~~~~rp~~   81 (88)
                      +|+..+|.+|+++
T Consensus       238 ~~L~~dP~~R~~~  250 (329)
T cd05588         238 GFLNKDPKERLGC  250 (329)
T ss_pred             HHhccCHHHcCCC
Confidence            9999999999984

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=99.45  E-value=3.8e-13  Score=72.30  Aligned_cols=85  Identities=35%  Similarity=0.582  Sum_probs=60.1

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHh-cCCCCCCCCCHHHHHHHHHc-----C--CCCC----CCCCChHHHHHH
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMS-LGQQPYPARTNVDVLHYVRG-----G--GRLN----RPANCSHLIRSR   70 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~-----~--~~~~----~~~~~~~~~~~~   70 (88)
                      .|++||......++.++|+|++|++++++++ .+..|+......+.......     .  ...+    .+..+.+++..|
T Consensus       197 ~~~~pe~~~~~~~~~~~DiwSlG~~l~el~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~c  276 (296)
T cd05095         197 RWMSWESILLGKFTTASDVWAFGVTLWEILTLCKEQPYSQLSDEQVIENTGEFFRDQGRQVYLPKPALCPDSLYKLMLSC  276 (296)
T ss_pred             ccCCHHHHhcCCccchhhhhHHHHHHHHHHHhCCCCCccccChHHHHHHHHHHHhhccccccCCCCCCCCHHHHHHHHHH
Confidence            5788998777778889999999999999886 25677765555444332211     1  1111    233455778888


Q ss_pred             HhhCcccCCChhhhhhc
Q psy8478          71 NRLTENKAPSAVSKKRI   87 (88)
Q Consensus        71 l~~~~~~rp~~~~~~~~   87 (88)
                      +..+|.+||++.++.++
T Consensus       277 l~~~p~~Rp~~~~i~~~  293 (296)
T cd05095         277 WRRNAKERPSFQEIHAT  293 (296)
T ss_pred             cCCCcccCCCHHHHHHH
Confidence            89999999999999764

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=99.45  E-value=5.8e-13  Score=70.98  Aligned_cols=84  Identities=19%  Similarity=0.384  Sum_probs=64.9

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCC----CCCChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNR----PANCSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~l~~~~~~   77 (88)
                      ..|++||.+....++.+.|+|++|++++++++ |..|+...........+..+.....    +..+.+++..|+..+|.+
T Consensus       165 ~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~  243 (277)
T cd06641         165 PFWMAPEVIKQSAYDSKADIWSLGITAIELAK-GEPPHSELHPMKVLFLIPKNNPPTLEGNYSKPLKEFVEACLNKEPSF  243 (277)
T ss_pred             ccccChhhhccCCCCchhhHHHHHHHHHHHHc-CCCCCCccchHHHHHHHhcCCCCCCCcccCHHHHHHHHHHccCChhh
Confidence            35789998877777888999999999999999 9999977666655555544433322    344667788888899999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||++.++++
T Consensus       244 Rp~~~~~l~  252 (277)
T cd06641         244 RPTAKELLK  252 (277)
T ss_pred             CcCHHHHHh
Confidence            999999875

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=99.45  E-value=6e-13  Score=72.92  Aligned_cols=83  Identities=11%  Similarity=0.251  Sum_probs=59.3

Q ss_pred             cccCcchhcc-CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC------------------------CC
Q psy8478           3 RWMAPECLVD-GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG------------------------RL   57 (88)
Q Consensus         3 ~~~~pe~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~------------------------~~   57 (88)
                      .|++||.+.. ..++.++|+|++|++++++++ |..||......+....+....                        ..
T Consensus       183 ~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (342)
T cd07854         183 WYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLT-GKPLFAGAHELEQMQLILESVPVVREEDRNELLNVIPSFVRNDGGEP  261 (342)
T ss_pred             cccCHHHHhCccccCchhhHHHHHHHHHHHHh-CCCCCCCCCHHHHHHHHHHhcCCCChHHhhhhhhhhhhhhhhccccc
Confidence            5889998764 456788999999999999999 999997665443333222110                        00


Q ss_pred             ---------CCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          58 ---------NRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        58 ---------~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                               ..+..+.+++.+|+..+|.+||++.++++
T Consensus       262 ~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~ell~  299 (342)
T cd07854         262 RRPLRDLLPGVNPEALDFLEQILTFNPMDRLTAEEALM  299 (342)
T ss_pred             CCCHHHHccCCCHHHHHHHHHHhCCCchhccCHHHHhC
Confidence                     11233456888999999999999999864

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=99.45  E-value=4.8e-13  Score=72.37  Aligned_cols=39  Identities=23%  Similarity=0.578  Sum_probs=33.3

Q ss_pred             CcccCcchhccC-CCCchhhHHHHHHHHHHHHhcCCCCCCC
Q psy8478           2 TRWMAPECLVDG-LFSSQSDVWAFGVLLWEIMSLGQQPYPA   41 (88)
Q Consensus         2 ~~~~~pe~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~   41 (88)
                      +.|++||.+.+. .++.++|+|++|++++++++ |..||..
T Consensus       179 ~~y~aPE~~~~~~~~~~~~DiwSlG~il~el~t-g~~~f~~  218 (317)
T cd07867         179 FWYRAPELLLGARHYTKAIDIWAIGCIFAELLT-SEPIFHC  218 (317)
T ss_pred             ccccCcHHhcCCCccCcHHHHHhHHHHHHHHHh-CCCCccc
Confidence            458999998764 57889999999999999999 9888864

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=99.45  E-value=1.1e-12  Score=70.11  Aligned_cols=83  Identities=20%  Similarity=0.409  Sum_probs=60.7

Q ss_pred             cccCcchhccC-CCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHc--------------------C-------
Q psy8478           3 RWMAPECLVDG-LFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRG--------------------G-------   54 (88)
Q Consensus         3 ~~~~pe~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--------------------~-------   54 (88)
                      .|++||.+... .++.+.|+|++|++++++++ |..|+.+....+....+..                    +       
T Consensus       166 ~~~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (288)
T cd07833         166 WYRAPELLVGDTNYGKPVDVWAIGCIMAELLD-GEPLFPGDSDIDQLYLIQKCLGPLPPSHQELFSSNPRFAGVAFPEPS  244 (288)
T ss_pred             CCcCCchhcCCCCcCchhhHHHHHHHHHHHHh-CCCCCCCCCHHHHHHHHHHHhCCCCHHHhhhcccCccccccccCCCC
Confidence            48999998877 77889999999999999999 9888876544333222111                    0       


Q ss_pred             --------CCCCCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          55 --------GRLNRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        55 --------~~~~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                              .+...+..+.+++.+|+..+|.+||+++++.+
T Consensus       245 ~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~  284 (288)
T cd07833         245 QPESLERRYPGKVSSPALDFLKACLRMDPKERLTCDELLQ  284 (288)
T ss_pred             CcHHHHHhcCCccchHHHHHHHHHhccCchhcccHHHHhc
Confidence                    00011445667889999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=99.45  E-value=1.5e-12  Score=71.89  Aligned_cols=83  Identities=23%  Similarity=0.381  Sum_probs=58.5

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC-CCCCC------CCChHHHHHHHhhC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG-RLNRP------ANCSHLIRSRNRLT   74 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~------~~~~~~~~~~l~~~   74 (88)
                      +.|++||.+.+..++.++|+|++|++++++++ |..||.+....+....+.... ....|      ..+.+++..++. +
T Consensus       200 ~~Y~aPE~~~~~~~~~~~DvwSlGvil~ell~-G~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~s~~~~~li~~l~~-~  277 (363)
T cd05628         200 PDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLI-GYPPFCSETPQETYKKVMNWKETLIFPPEVPISEKAKDLILRFCC-E  277 (363)
T ss_pred             ccccCHHHHcCCCCCCchhhhhhHHHHHHHHh-CCCCCCCCCHHHHHHHHHcCcCcccCCCcCCCCHHHHHHHHHHcC-C
Confidence            46899999988888999999999999999999 999998888777777765421 12122      223334444332 3


Q ss_pred             cc---cCCChhhhhh
Q psy8478          75 EN---KAPSAVSKKR   86 (88)
Q Consensus        75 ~~---~rp~~~~~~~   86 (88)
                      +.   .||+++++.+
T Consensus       278 ~~~r~~r~~~~ei~~  292 (363)
T cd05628         278 WEHRIGAPGVEEIKT  292 (363)
T ss_pred             hhhcCCCCCHHHHhC
Confidence            33   4578888754

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>KOG0596|consensus

Probab=99.44  E-value=2.2e-13  Score=77.63  Aligned_cols=85  Identities=22%  Similarity=0.381  Sum_probs=59.6

Q ss_pred             CCcccCcchhccCC-----------CCchhhHHHHHHHHHHHHhcCCCCCCCCCH-HHHHHHHHcCC---C-CCC--CCC
Q psy8478           1 MTRWMAPECLVDGL-----------FSSQSDVWAFGVLLWEIMSLGQQPYPARTN-VDVLHYVRGGG---R-LNR--PAN   62 (88)
Q Consensus         1 ~~~~~~pe~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~---~-~~~--~~~   62 (88)
                      ++.||+||.+....           .+.++|+|++||++|++++ |.+||..... ..-+..|....   . +..  +..
T Consensus       524 T~NYMsPEAl~~~~s~~~~~~~k~Ki~r~SDvWSLGCILYqMvY-gktPf~~~~n~~aKl~aI~~P~~~Iefp~~~~~~~  602 (677)
T KOG0596|consen  524 TVNYMSPEALTDMSSSRENGKSKIKISRKSDVWSLGCILYQMVY-GKTPFGQIINQIAKLHAITDPNHEIEFPDIPENDE  602 (677)
T ss_pred             cccccCHHHHhhccccccCCCcceeecCccchhhhhhHHHHHHh-cCCchHHHHHHHHHHHhhcCCCccccccCCCCchH
Confidence            46799999886322           4578999999999999999 9999975432 11122232211   1 111  223


Q ss_pred             ChHHHHHHHhhCcccCCChhhhhh
Q psy8478          63 CSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        63 ~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                      +.+.++.||.++|.+||+..++++
T Consensus       603 li~~mK~CL~rdPkkR~si~eLLq  626 (677)
T KOG0596|consen  603 LIDVMKCCLARDPKKRWSIPELLQ  626 (677)
T ss_pred             HHHHHHHHHhcCcccCCCcHHHhc
Confidence            678889999999999999998865

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=99.44  E-value=1.2e-12  Score=70.59  Aligned_cols=84  Identities=20%  Similarity=0.372  Sum_probs=60.6

Q ss_pred             CcccCcchhccC-CCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC--------------------C----
Q psy8478           2 TRWMAPECLVDG-LFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG--------------------R----   56 (88)
Q Consensus         2 ~~~~~pe~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--------------------~----   56 (88)
                      +.|++||.+... .++.++|+|++|++++++++ |..||...+..+....+....                    .    
T Consensus       168 ~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~t-g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (301)
T cd07873         168 LWYRPPDILLGSTDYSTQIDMWGVGCIFYEMST-GRPLFPGSTVEEQLHFIFRILGTPTEETWPGILSNEEFKSYNYPKY  246 (301)
T ss_pred             ecccCcHHHhCCCCCccHHHHHHHHHHHHHHHh-CCCCCCCCCHHHHHHHHHHHcCCCChhhchhhhccccccccccCcc
Confidence            458899987653 46778999999999999999 999998766544433221100                    0    


Q ss_pred             ---------CCCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          57 ---------LNRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        57 ---------~~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                               ...+..+.+++.+|+..+|.+|||+.++.+
T Consensus       247 ~~~~~~~~~~~~~~~~~~li~~ml~~dp~~R~t~~eil~  285 (301)
T cd07873         247 RADCLHNHAPRLDSDGAELLSKLLQFEGRKRISAEEAMK  285 (301)
T ss_pred             ccccHHhhcCCCCHHHHHHHHHHhcCCcccCcCHHHHhc
Confidence                     011223457899999999999999999865

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=99.44  E-value=9.3e-13  Score=70.29  Aligned_cols=84  Identities=18%  Similarity=0.237  Sum_probs=57.4

Q ss_pred             CcccCcchhccC-CCCchhhHHHHHHHHHHHHhcCCCCC-CCCCHHHHHHHHHcCC------------------------
Q psy8478           2 TRWMAPECLVDG-LFSSQSDVWAFGVLLWEIMSLGQQPY-PARTNVDVLHYVRGGG------------------------   55 (88)
Q Consensus         2 ~~~~~pe~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~------------------------   55 (88)
                      ..|++||.+.+. .++.+.|+|++|++++++++ |..|+ .+.+..+....+....                        
T Consensus       163 ~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (284)
T cd07839         163 LWYRPPDVLFGAKLYSTSIDMWSAGCIFAELAN-AGRPLFPGNDVDDQLKRIFRLLGTPTEESWPGVSKLPDYKPYPMYP  241 (284)
T ss_pred             cCCcChHHHhCCcccCcHHHHHHHHHHHHHHHh-cCCCCcCCCCHHHHHHHHHHHhCCCChHHhHHhhhcccccccCCCC
Confidence            458999988664 46788999999999999999 66554 4444333332221100                        


Q ss_pred             --------CCCCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          56 --------RLNRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        56 --------~~~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                              ....+..+.+++.+|+..+|.+|||++++.+
T Consensus       242 ~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~~il~  280 (284)
T cd07839         242 ATTSLVNVVPKLNSTGRDLLQNLLVCNPVQRISAEEALQ  280 (284)
T ss_pred             CcchhhhhcccCCHHHHHHHHHHhcCChhhcCCHHHHhc
Confidence                    0011234457899999999999999999865

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=99.44  E-value=6.2e-13  Score=70.97  Aligned_cols=84  Identities=21%  Similarity=0.361  Sum_probs=58.7

Q ss_pred             CcccCcchhccCC-CCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcC-CC-----------------------
Q psy8478           2 TRWMAPECLVDGL-FSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGG-GR-----------------------   56 (88)
Q Consensus         2 ~~~~~pe~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~-----------------------   56 (88)
                      ..|++||.+.+.. ++.+.|+|++|++++++++ |..||...........+... ..                       
T Consensus       164 ~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (284)
T cd07860         164 LWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVT-RRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSLPDYKPSFPKWA  242 (284)
T ss_pred             ccccCCeEEecCCCCCcHHHHHHHHHHHHHHHH-CCCCCCCCCHHHHHHHHHHHhCCCChhhhhhhhHHHHHHhhccccc
Confidence            3589999876543 5778999999999999999 98888765543332222110 00                       


Q ss_pred             --------CCCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          57 --------LNRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        57 --------~~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                              +..+..+.+++.+|+..+|.+||+++++.+
T Consensus       243 ~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~l~  280 (284)
T cd07860         243 RQDFSKVVPPLDEDGRDLLSQMLHYDPNKRISAKAALA  280 (284)
T ss_pred             ccCHHHHcccCCHHHHHHHHHhcCCCcccCCCHHHHhc
Confidence                    011233446888999999999999999865

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=99.44  E-value=5.2e-13  Score=70.71  Aligned_cols=84  Identities=21%  Similarity=0.345  Sum_probs=59.0

Q ss_pred             CcccCcchhc---cCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcC-CCC-------CCCCCChHHHHHH
Q psy8478           2 TRWMAPECLV---DGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGG-GRL-------NRPANCSHLIRSR   70 (88)
Q Consensus         2 ~~~~~pe~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~-------~~~~~~~~~~~~~   70 (88)
                      ..|++||.+.   ...++.++|+|++|++++++++ +..|+............... ...       ..+..+.+++.+|
T Consensus       170 ~~y~aPE~~~~~~~~~~~~~~DvwSlG~il~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~  248 (267)
T cd06645         170 PYWMAPEVAAVERKGGYNQLCDIWAVGITAIELAE-LQPPMFDLHPMRALFLMTKSNFQPPKLKDKMKWSNSFHHFVKMA  248 (267)
T ss_pred             ccccChhhhccccCCCCCchhhhHHHHHHHHHHhc-CCCCcccccchhhHHhhhccCCCCCcccccCCCCHHHHHHHHHH
Confidence            4689999874   3346778999999999999999 88888654433332222211 111       1223456788899


Q ss_pred             HhhCcccCCChhhhhh
Q psy8478          71 NRLTENKAPSAVSKKR   86 (88)
Q Consensus        71 l~~~~~~rp~~~~~~~   86 (88)
                      +..+|++||++.++++
T Consensus       249 l~~~P~~R~~~~~ll~  264 (267)
T cd06645         249 LTKNPKKRPTAEKLLQ  264 (267)
T ss_pred             ccCCchhCcCHHHHhc
Confidence            9999999999999865

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=99.44  E-value=2.2e-13  Score=75.39  Aligned_cols=84  Identities=21%  Similarity=0.364  Sum_probs=62.9

Q ss_pred             CcccCcchhccC----CCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC-CCCC------CCCChHHHHHH
Q psy8478           2 TRWMAPECLVDG----LFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG-RLNR------PANCSHLIRSR   70 (88)
Q Consensus         2 ~~~~~pe~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~------~~~~~~~~~~~   70 (88)
                      +.|++||.+...    .++.++|+|++|++++++++ |..||.+.........+.... ....      +..+.+++.++
T Consensus       207 ~~y~aPE~~~~~~~~~~~~~~~DiwSlGvilyellt-G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~  285 (370)
T cd05596         207 PDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLV-GDTPFYADSLVGTYSKIMDHKNSLTFPDDIEISKQAKDLICAF  285 (370)
T ss_pred             cCeECHHHhccCCCCCCCCCceeeeehhHHHHHHHh-CCCCcCCCCHHHHHHHHHcCCCcCCCCCcCCCCHHHHHHHHHH
Confidence            569999988643    36778999999999999999 999998887776766665432 2222      33455677788


Q ss_pred             HhhCccc--CCChhhhhh
Q psy8478          71 NRLTENK--APSAVSKKR   86 (88)
Q Consensus        71 l~~~~~~--rp~~~~~~~   86 (88)
                      |..++.+  |++++++.+
T Consensus       286 L~~~p~r~~R~s~~ell~  303 (370)
T cd05596         286 LTDREVRLGRNGVDEIKS  303 (370)
T ss_pred             ccChhhccCCCCHHHHhc
Confidence            8777776  899998854

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=99.44  E-value=7.3e-13  Score=70.94  Aligned_cols=78  Identities=19%  Similarity=0.349  Sum_probs=57.2

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHH----HcCC---CCCCCCCChHHHHHHHhhC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYV----RGGG---RLNRPANCSHLIRSRNRLT   74 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i----~~~~---~~~~~~~~~~~~~~~l~~~   74 (88)
                      ..|++||.+.+..++.+.|+|++|++++++++ |..||.+.........+    ....   ....+....+++..|+..+
T Consensus       165 ~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~~-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~  243 (285)
T cd05632         165 VGYMAPEVLNNQRYTLSPDYWGLGCLIYEMIE-GQSPFRGRKEKVKREEVDRRVLETEEVYSAKFSEEAKSICKMLLTKD  243 (285)
T ss_pred             cCccChHHhcCCCCCcccchHHHHHHHHHHHh-CCCCCCCCCHHHHHHHHHHhhhccccccCccCCHHHHHHHHHHccCC
Confidence            46899999987788889999999999999999 99999866544332222    2111   1123344566778888889


Q ss_pred             cccCCC
Q psy8478          75 ENKAPS   80 (88)
Q Consensus        75 ~~~rp~   80 (88)
                      |.+||+
T Consensus       244 P~~R~~  249 (285)
T cd05632         244 PKQRLG  249 (285)
T ss_pred             HhHcCC
Confidence            999999

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=99.43  E-value=9e-13  Score=71.83  Aligned_cols=83  Identities=22%  Similarity=0.349  Sum_probs=58.5

Q ss_pred             cccCcchhccC--CCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCC------------------------
Q psy8478           3 RWMAPECLVDG--LFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGR------------------------   56 (88)
Q Consensus         3 ~~~~pe~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------------------------   56 (88)
                      .|++||.+...  .++.++|+|++|++++++++ |..||......+..........                        
T Consensus       173 ~y~aPE~~~~~~~~~~~~~DiwslG~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (328)
T cd08226         173 PWLSPELLRQDLYGYNVKSDIYSVGITACELAT-GRVPFQDMLRTQMLLQKLKGPPYSPLDITTFPCEESRMKNSQSGVD  251 (328)
T ss_pred             CccChhhhcCCCCCCCchhhHHHHHHHHHHHHh-CCCCCCCcChHHHHHHHhcCCCCCCccccccchhhhhhccchhhhh
Confidence            48999998753  46788999999999999999 9999976554333222211100                        


Q ss_pred             ----------------------CC----CCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          57 ----------------------LN----RPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        57 ----------------------~~----~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                                            .+    .+..+.+++..|+..+|.+|||+.++++
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpta~e~l~  307 (328)
T cd08226         252 SGIGESVVAAGMTQTMTSERLRTPSSKTFSPAFQNLVELCLQQDPEKRPSASSLLS  307 (328)
T ss_pred             cccccchhccccccccccccccchhhhhhhHHHHHHHHHHccCCcccCCCHHHHhh
Confidence                                  00    1122456888899999999999999864

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>PHA03212 serine/threonine kinase US3; Provisional

Probab=99.43  E-value=8.3e-13  Score=73.66  Aligned_cols=84  Identities=19%  Similarity=0.300  Sum_probs=58.0

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCC-------HHHHHHHH-----------------------
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPART-------NVDVLHYV-----------------------   51 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~i-----------------------   51 (88)
                      +.|++||.+....++.++|+|++|++++++++ |..|+....       ....+..+                       
T Consensus       247 ~~y~aPE~~~~~~~~~~~DiwSlGvil~ellt-g~~p~~~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  325 (391)
T PHA03212        247 IATNAPELLARDPYGPAVDIWSAGIVLFEMAT-CHDSLFEKDGLDGDCDSDRQIKLIIRRSGTHPNEFPIDAQANLDEIY  325 (391)
T ss_pred             cCCCChhhhcCCCCCcHHHHHHHHHHHHHHHH-CCCCcCCcccccccCchhHHHHHHHHHhcCChhhcCcchhHHHHHHH
Confidence            56889999988888999999999999999999 776653221       01111111                       


Q ss_pred             ---HcC-C-----CC------CCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          52 ---RGG-G-----RL------NRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        52 ---~~~-~-----~~------~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                         ... .     ++      ..+..+.+++.+||..+|.+|||++++++
T Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Li~~mL~~dP~~Rpta~elL~  375 (391)
T PHA03212        326 IGLAKKSSRKPGSRPLWTNLYELPIDLEYLICKMLAFDAHHRPSAEALLD  375 (391)
T ss_pred             HHHHhccCCCCCCCCCHHHHhhhhhhHHHHHHHHhcCChhhCCCHHHHhc
Confidence               000 0     00      11335667889999999999999999875

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=99.43  E-value=1.9e-12  Score=72.50  Aligned_cols=86  Identities=31%  Similarity=0.677  Sum_probs=63.0

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHH-HHHHHcCCCCCCCCC----ChHHHHHHHhhCcc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDV-LHYVRGGGRLNRPAN----CSHLIRSRNRLTEN   76 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~----~~~~~~~~l~~~~~   76 (88)
                      ..|++||.+....++.++|+|++|++++++++.|..||......+. ...+..+.++..|..    +.+++.+|+..+|.
T Consensus       305 ~~y~aPE~~~~~~~~~~~DvwslGvil~e~l~~g~~P~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~li~~cl~~~P~  384 (401)
T cd05107         305 LKWMAPESIFNNLYTTLSDVWSFGILLWEIFTLGGTPYPELPMNEQFYNAIKRGYRMAKPAHASDEIYEIMQKCWEEKFE  384 (401)
T ss_pred             CceeChHHhcCCCCCcHhHHHHHHHHHHHHHHcCCCCCCCCCchHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCChh
Confidence            3589999988777888999999999999988757788876544443 333444444444444    44667777778889


Q ss_pred             cCCChhhhhhc
Q psy8478          77 KAPSAVSKKRI   87 (88)
Q Consensus        77 ~rp~~~~~~~~   87 (88)
                      +||++.++.+.
T Consensus       385 ~RPs~~ell~~  395 (401)
T cd05107         385 IRPDFSQLVHL  395 (401)
T ss_pred             HCcCHHHHHHH
Confidence            99999998753

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.43  E-value=2.3e-13  Score=74.96  Aligned_cols=83  Identities=17%  Similarity=0.374  Sum_probs=61.5

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC-CCCC------CCCChHHHHHHHhhC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG-RLNR------PANCSHLIRSRNRLT   74 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~------~~~~~~~~~~~l~~~   74 (88)
                      +.|++||.+....++.++|+|++|++++++++ |..||.+....+....+.... ....      +..+.+++..++. +
T Consensus       203 ~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~ll~-~  280 (364)
T cd05599         203 PDYIAPEVFLQTGYNKECDWWSLGVIMYEMLV-GYPPFCSDNPQETYRKIINWKETLQFPDEVPLSPEAKDLIKRLCC-E  280 (364)
T ss_pred             ccccCHHHHcCCCCCCeeeeecchhHHHHhhc-CCCCCCCCCHHHHHHHHHcCCCccCCCCCCCCCHHHHHHHHHHcc-C
Confidence            46899999988888999999999999999999 999998877776666664322 1122      2234456666664 7


Q ss_pred             cccCCC---hhhhhh
Q psy8478          75 ENKAPS---AVSKKR   86 (88)
Q Consensus        75 ~~~rp~---~~~~~~   86 (88)
                      +.+|++   ++++++
T Consensus       281 p~~R~~~~~~~~ll~  295 (364)
T cd05599         281 AERRLGNNGVNEIKS  295 (364)
T ss_pred             HhhcCCCCCHHHHhc
Confidence            888997   777654

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=99.43  E-value=4.2e-13  Score=71.70  Aligned_cols=83  Identities=18%  Similarity=0.273  Sum_probs=59.8

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCH----HHHHHHHHcCC---CCCCCCCChHHHHHHHhhC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTN----VDVLHYVRGGG---RLNRPANCSHLIRSRNRLT   74 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~---~~~~~~~~~~~~~~~l~~~   74 (88)
                      +.|++||.+.+..++.++|+|++|++++++++ |..||.....    ......+....   ....+..+.+++.+|+..+
T Consensus       161 ~~y~aPE~~~~~~~~~~~DvwslG~il~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~  239 (280)
T cd05608         161 PGFMAPELLQGEEYDFSVDYFALGVTLYEMIA-ARGPFRARGEKVENKELKQRILNDSVTYPDKFSPASKSFCEALLAKD  239 (280)
T ss_pred             cCccCHHHhcCCCCCccccHHHHHHHHHHHHh-CCCCCCCCCcchhHHHHHHhhcccCCCCcccCCHHHHHHHHHHhcCC
Confidence            46899999988888889999999999999999 9999875432    22222222221   1123445677888999999


Q ss_pred             cccCC-----Chhhhh
Q psy8478          75 ENKAP-----SAVSKK   85 (88)
Q Consensus        75 ~~~rp-----~~~~~~   85 (88)
                      |.+||     +++++.
T Consensus       240 P~~R~~~~~~~~~~~l  255 (280)
T cd05608         240 PEKRLGFRDGNCDGLR  255 (280)
T ss_pred             HHHhcCCCCCCHHHHh
Confidence            99999     555554

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=99.43  E-value=1.1e-12  Score=69.05  Aligned_cols=84  Identities=19%  Similarity=0.384  Sum_probs=61.9

Q ss_pred             CcccCcchhccCC-CCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHc-CCCCCCC----CCChHHHHHHHhhCc
Q psy8478           2 TRWMAPECLVDGL-FSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRG-GGRLNRP----ANCSHLIRSRNRLTE   75 (88)
Q Consensus         2 ~~~~~pe~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~----~~~~~~~~~~l~~~~   75 (88)
                      ..|++||.+.... ++.+.|+|++|++++++++ |..||......+....+.. ......+    ..+.+++.+|+..+|
T Consensus       165 ~~y~~pe~~~~~~~~~~~~D~~slG~~l~~l~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p  243 (258)
T cd06632         165 PYWMAPEVIAQQGGYGLAADIWSLGCTVLEMAT-GKPPWSQLEGVAAVFKIGRSKELPPIPDHLSDEAKDFILKCLQRDP  243 (258)
T ss_pred             cceeCHHHhcCCCCCCchhhhHHHHHHHHHHHh-CCCCcccCcHHHHHHHHHhcccCCCcCCCcCHHHHHHHHHHhhcCc
Confidence            3588999887655 7888999999999999999 9999876655444444433 2222223    345567888888999


Q ss_pred             ccCCChhhhhh
Q psy8478          76 NKAPSAVSKKR   86 (88)
Q Consensus        76 ~~rp~~~~~~~   86 (88)
                      .+||++.++++
T Consensus       244 ~~Rp~~~~~l~  254 (258)
T cd06632         244 SLRPTAAELLE  254 (258)
T ss_pred             ccCcCHHHHhc
Confidence            99999999875

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=99.42  E-value=1.3e-12  Score=71.09  Aligned_cols=83  Identities=18%  Similarity=0.325  Sum_probs=62.2

Q ss_pred             cccCcchhccC-CCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCC-------------------------
Q psy8478           3 RWMAPECLVDG-LFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGR-------------------------   56 (88)
Q Consensus         3 ~~~~pe~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-------------------------   56 (88)
                      .|++||.+... .++.++|+|++|++++++++ |..||.+....+....+.....                         
T Consensus       171 ~y~aPE~~~~~~~~~~~sDi~slG~il~~l~~-g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (330)
T cd07834         171 WYRAPELLLSSSRYTKAIDIWSVGCIFAELLT-RKPLFPGRDYIDQLNLIVEVLGTPSEEDLKFITSEKARNYLKSLPKK  249 (330)
T ss_pred             CcCCceeeecccCCCcchhHHHHHHHHHHHHc-CCCCcCCCCHHHHHHHHHHhcCCCChhHhhhccccchhhHHhhcccC
Confidence            47899998876 67889999999999999999 9999987665554444322110                         


Q ss_pred             ---------CCCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          57 ---------LNRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        57 ---------~~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                               ...+..+.+++..|+..+|.+||+++++.+
T Consensus       250 ~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~  288 (330)
T cd07834         250 PKKPLSKLFPGASPEAIDLLEKMLVFDPKKRITADEALA  288 (330)
T ss_pred             CcchhHHhcccCCHHHHHHHHHHccCChhhCCCHHHHHh
Confidence                     012334457888999999999999999864

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=99.42  E-value=7.9e-13  Score=71.52  Aligned_cols=84  Identities=17%  Similarity=0.305  Sum_probs=59.5

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHH-----------------------------
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVR-----------------------------   52 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-----------------------------   52 (88)
                      ..|++||.+.+..++.++|+|++|++++++++ |..||...........+.                             
T Consensus       162 ~~~~aPE~~~~~~~~~~~DiwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (308)
T cd06615         162 RSYMSPERLQGTHYTVQSDIWSLGLSLVEMAI-GRYPIPPPDAKELEAMFGRPVSEGEAKESHRPVSGHPPDSPRPMAIF  240 (308)
T ss_pred             cCccChhHhcCCCCCccchHHHHHHHHHHHHh-CCCCCCCcchhhHHHhhcCccccccccCCcccccCCCCCccchhhHH
Confidence            46899998877778889999999999999999 988886544332222111                             


Q ss_pred             -------cCCCCC-----CCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          53 -------GGGRLN-----RPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        53 -------~~~~~~-----~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                             ....+.     .+..+.+++..|+..+|.+||+++++.+
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~  286 (308)
T cd06615         241 ELLDYIVNEPPPKLPSGAFSDEFQDFVDKCLKKNPKERADLKELTK  286 (308)
T ss_pred             HHHHHHhcCCCccCcCcccCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence                   010111     1223557788899999999999999865

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>KOG2345|consensus

Probab=99.42  E-value=1e-13  Score=72.45  Aligned_cols=84  Identities=19%  Similarity=0.334  Sum_probs=57.6

Q ss_pred             CcccCcchhccC---CCCchhhHHHHHHHHHHHHhcCCCCCCCCCH--HHHHHHHHc-----CCCCCCCCCChHHHHHHH
Q psy8478           2 TRWMAPECLVDG---LFSSQSDVWAFGVLLWEIMSLGQQPYPARTN--VDVLHYVRG-----GGRLNRPANCSHLIRSRN   71 (88)
Q Consensus         2 ~~~~~pe~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~-----~~~~~~~~~~~~~~~~~l   71 (88)
                      +-|.|||-+...   ..+.+.|+||+||++|+++. |..||...-.  ..+--.+..     ....+.++....++..|+
T Consensus       202 ~pyRAPELf~vk~~~ti~ertDIWSLGCtLYa~mf-~~sPfe~~~~~GgSlaLAv~n~q~s~P~~~~yse~l~~lik~ml  280 (302)
T KOG2345|consen  202 IPYRAPELFNVKSHCTITERTDIWSLGCTLYAMMF-GESPFERIYQQGGSLALAVQNAQISIPNSSRYSEALHQLIKSML  280 (302)
T ss_pred             CcccCchheecccCcccccccchhhhhHHHHHHHH-cCCcchHHhhcCCeEEEeeeccccccCCCCCccHHHHHHHHHHh
Confidence            458899988743   35678999999999999999 9999952110  000000111     111234556678889999


Q ss_pred             hhCcccCCChhhhhh
Q psy8478          72 RLTENKAPSAVSKKR   86 (88)
Q Consensus        72 ~~~~~~rp~~~~~~~   86 (88)
                      +++|++||++.+++.
T Consensus       281 qvdP~qRP~i~~ll~  295 (302)
T KOG2345|consen  281 QVDPNQRPTIPELLS  295 (302)
T ss_pred             cCCcccCCCHHHHHH
Confidence            999999999988753

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=99.42  E-value=2.4e-13  Score=73.16  Aligned_cols=84  Identities=21%  Similarity=0.481  Sum_probs=61.0

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC--CCC----CCChHHHHHHHhhCc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRL--NRP----ANCSHLIRSRNRLTE   75 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~----~~~~~~~~~~l~~~~   75 (88)
                      +.|++||.+....++.+.|+|++|++++++++ |..||...........+.....+  ..+    ....+++.+|+..+|
T Consensus       179 ~~y~aPE~~~~~~~~~~~Di~slGvil~~l~t-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p  257 (297)
T cd06656         179 PYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVE-GEPPYLNENPLRALYLIATNGTPELQNPERLSAVFRDFLNRCLEMDV  257 (297)
T ss_pred             ccccCHHHHcCCCCCcHHHHHHHHHHHHHHHh-CCCCCCCCCcchheeeeccCCCCCCCCccccCHHHHHHHHHHccCCh
Confidence            46889999887778889999999999999999 99999765543332222222111  122    234567788888899


Q ss_pred             ccCCChhhhhh
Q psy8478          76 NKAPSAVSKKR   86 (88)
Q Consensus        76 ~~rp~~~~~~~   86 (88)
                      .+||++.++.+
T Consensus       258 ~~Rps~~~il~  268 (297)
T cd06656         258 DRRGSAKELLQ  268 (297)
T ss_pred             hhCcCHHHHhc
Confidence            99999999865

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=99.42  E-value=4.5e-13  Score=70.97  Aligned_cols=85  Identities=20%  Similarity=0.310  Sum_probs=58.6

Q ss_pred             CcccCcchhc---cCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcC-CCCC-------CCCCChHHHHHH
Q psy8478           2 TRWMAPECLV---DGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGG-GRLN-------RPANCSHLIRSR   70 (88)
Q Consensus         2 ~~~~~pe~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~-------~~~~~~~~~~~~   70 (88)
                      ..|++||.+.   ...++.++|+|++|++++++++ |..|+......+....+... ...+       .+..+.+++..|
T Consensus       170 ~~y~~PE~~~~~~~~~~~~~~Dvws~G~il~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~  248 (267)
T cd06646         170 PYWMAPEVAAVEKNGGYNQLCDIWAVGITAIELAE-LQPPMFDLHPMRALFLMSKSNFQPPKLKDKTKWSSTFHNFVKIS  248 (267)
T ss_pred             ccccCHhHcccccCCCCcchhhHHHHHHHHHHHHh-CCCCccccchhhhheeeecCCCCCCCCccccccCHHHHHHHHHH
Confidence            4689999874   2346678999999999999999 88888654433322222111 1111       123456788888


Q ss_pred             HhhCcccCCChhhhhhc
Q psy8478          71 NRLTENKAPSAVSKKRI   87 (88)
Q Consensus        71 l~~~~~~rp~~~~~~~~   87 (88)
                      +..+|++||+++++++.
T Consensus       249 l~~~P~~Rp~~~~il~~  265 (267)
T cd06646         249 LTKNPKKRPTAERLLTH  265 (267)
T ss_pred             hhCChhhCcCHHHHhcC
Confidence            99999999999998763

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=99.42  E-value=8.9e-13  Score=70.38  Aligned_cols=84  Identities=23%  Similarity=0.423  Sum_probs=60.8

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCH-------HHHHHHHHcCCCCC-----CCCCChHHHHH
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTN-------VDVLHYVRGGGRLN-----RPANCSHLIRS   69 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~i~~~~~~~-----~~~~~~~~~~~   69 (88)
                      ..|++||.+....++.++|+|++|++++++++ |..||.....       .+....+.......     .+..+.+++.+
T Consensus       157 ~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  235 (279)
T cd06619         157 NAYMAPERISGEQYGIHSDVWSLGISFMELAL-GRFPYPQIQKNQGSLMPLQLLQCIVDEDPPVLPVGQFSEKFVHFITQ  235 (279)
T ss_pred             hhhcCceeecCCCCCCcchHHHHHHHHHHHHh-CCCCchhhcccccccchHHHHHHHhccCCCCCCCCcCCHHHHHHHHH
Confidence            46899999887788889999999999999999 9988854221       12222322222111     22346678889


Q ss_pred             HHhhCcccCCChhhhhh
Q psy8478          70 RNRLTENKAPSAVSKKR   86 (88)
Q Consensus        70 ~l~~~~~~rp~~~~~~~   86 (88)
                      |+..+|.+||+++++.+
T Consensus       236 ~l~~~P~~Rp~~~eil~  252 (279)
T cd06619         236 CMRKQPKERPAPENLMD  252 (279)
T ss_pred             HhhCChhhCCCHHHHhc
Confidence            99999999999999864

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=99.42  E-value=5.3e-13  Score=73.38  Aligned_cols=84  Identities=18%  Similarity=0.269  Sum_probs=57.9

Q ss_pred             CcccCcchhccC-----CCCchhhHHHHHHHHHHHHhcCCCCCCCCCH---HHHHHHHHcCCCCC----CCCCChHHHHH
Q psy8478           2 TRWMAPECLVDG-----LFSSQSDVWAFGVLLWEIMSLGQQPYPARTN---VDVLHYVRGGGRLN----RPANCSHLIRS   69 (88)
Q Consensus         2 ~~~~~pe~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~----~~~~~~~~~~~   69 (88)
                      ..|++||.+...     ..+.++|+|++|++++++++ |..||.....   ......+.......    .+..+.+++..
T Consensus       232 ~~y~aPE~~~~~~~~~~~~~~~~DvwslGvil~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~  310 (353)
T PLN00034        232 IAYMSPERINTDLNHGAYDGYAGDIWSLGVSILEFYL-GRFPFGVGRQGDWASLMCAICMSQPPEAPATASREFRHFISC  310 (353)
T ss_pred             ccccCccccccccccCcCCCcchhHHHHHHHHHHHHh-CCCCCCCCCCccHHHHHHHHhccCCCCCCCccCHHHHHHHHH
Confidence            468999987531     23457999999999999999 9999864332   22222232222222    23345678888


Q ss_pred             HHhhCcccCCChhhhhh
Q psy8478          70 RNRLTENKAPSAVSKKR   86 (88)
Q Consensus        70 ~l~~~~~~rp~~~~~~~   86 (88)
                      |+..++.+||++.++++
T Consensus       311 ~l~~~P~~Rpt~~ell~  327 (353)
T PLN00034        311 CLQREPAKRWSAMQLLQ  327 (353)
T ss_pred             HccCChhhCcCHHHHhc
Confidence            89999999999999875

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=99.42  E-value=1.3e-12  Score=71.57  Aligned_cols=83  Identities=17%  Similarity=0.345  Sum_probs=60.2

Q ss_pred             cccCcchhcc-CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCC-------------------------
Q psy8478           3 RWMAPECLVD-GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGR-------------------------   56 (88)
Q Consensus         3 ~~~~pe~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-------------------------   56 (88)
                      .|++||.+.. ..++.++|+|++|++++++++ |..||.+.+.......+.....                         
T Consensus       179 ~y~aPE~~~~~~~~~~~~Dv~slGvil~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (342)
T cd07879         179 WYRAPEVILNWMHYNQTVDIWSVGCIMAEMLT-GKTLFKGKDYLDQLTQILKVTGVPGPEFVQKLEDKAAKSYIKSLPKY  257 (342)
T ss_pred             cccChhhhcCccccCchHHHHHHHHHHHHHHh-CCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHhcccchHHHHhhcCCc
Confidence            5889998865 357789999999999999999 9999987654433332211000                         


Q ss_pred             ---------CCCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          57 ---------LNRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        57 ---------~~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                               +..+..+.+++.+|+..+|.+||++.++++
T Consensus       258 ~~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~~~~e~l~  296 (342)
T cd07879         258 PRKDFSTLFPKASPQAVDLLEKMLELDVDKRLTATEALE  296 (342)
T ss_pred             ccchHHHHhcCCCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence                     011233567888999999999999999864

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=99.42  E-value=7.7e-13  Score=70.68  Aligned_cols=84  Identities=20%  Similarity=0.383  Sum_probs=60.5

Q ss_pred             CcccCcchhcc-----CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC--CC----CCCChHHHHHH
Q psy8478           2 TRWMAPECLVD-----GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRL--NR----PANCSHLIRSR   70 (88)
Q Consensus         2 ~~~~~pe~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~----~~~~~~~~~~~   70 (88)
                      ..|++||.+..     ..++.++|+|++|++++++++ |..|+......+....+......  ..    +..+.+++.+|
T Consensus       188 ~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvi~~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~  266 (286)
T cd06638         188 PFWMAPEVIACEQQLDSTYDARCDVWSLGITAIELGD-GDPPLADLHPMRALFKIPRNPPPTLHQPELWSNEFNDFIRKC  266 (286)
T ss_pred             CcccChhhhchhhhccccccchhhhhhHHHHHHHHhc-CCCCCCCCchhHHHhhccccCCCcccCCCCcCHHHHHHHHHH
Confidence            45899998753     346778999999999999999 98888766554443333222211  11    23466778889


Q ss_pred             HhhCcccCCChhhhhh
Q psy8478          71 NRLTENKAPSAVSKKR   86 (88)
Q Consensus        71 l~~~~~~rp~~~~~~~   86 (88)
                      +..+|.+||++.++++
T Consensus       267 l~~~p~~Rps~~ell~  282 (286)
T cd06638         267 LTKDYEKRPTVSDLLQ  282 (286)
T ss_pred             ccCCcccCCCHHHHhh
Confidence            9999999999999875

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>PHA03207 serine/threonine kinase US3; Provisional

Probab=99.41  E-value=7.4e-13  Score=73.79  Aligned_cols=84  Identities=18%  Similarity=0.206  Sum_probs=58.7

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCH---HHHHHHHHc-------------------------
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTN---VDVLHYVRG-------------------------   53 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~-------------------------   53 (88)
                      +.|++||.+....++.++|+|++|++++++++ |..||.+...   ...+..+..                         
T Consensus       251 ~~y~aPE~~~~~~~~~~~DvwslGvil~el~~-g~~pf~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (392)
T PHA03207        251 LETNSPELLALDPYCAKTDIWSAGLVLFEMSV-KNVTLFGKQVKSSSSQLRSIIRCMQVHPLEFPQNGSTNLCKHFKQYA  329 (392)
T ss_pred             cCccCHhHhcCCCCCchhhHHHHHHHHHHHHH-CCCCCCCCCCCCcHHHHHHHHHHhccCccccCCccchhHHHHHHhhc
Confidence            46899999988888899999999999999999 8888865431   111111100                         


Q ss_pred             -CCCC--C---------CCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          54 -GGRL--N---------RPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        54 -~~~~--~---------~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                       ..+.  .         .+..+.+++.+|+..+|.+||++.+++.
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~Rpsa~e~l~  374 (392)
T PHA03207        330 IVLRPPYTIPPVIRKYGMHMDVEYLIAKMLTFDQEFRPSAQDILS  374 (392)
T ss_pred             ccccCCccccchhhccCcchhHHHHHHHHhccChhhCCCHHHHhh
Confidence             0000  0         1223445788999999999999999864

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=99.41  E-value=1.2e-12  Score=71.71  Aligned_cols=83  Identities=18%  Similarity=0.342  Sum_probs=60.8

Q ss_pred             cccCcchhccC-CCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCC-------------------------
Q psy8478           3 RWMAPECLVDG-LFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGR-------------------------   56 (88)
Q Consensus         3 ~~~~pe~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-------------------------   56 (88)
                      .|++||.+... .++.++|+|++|++++++++ |..||.+....+....+.+...                         
T Consensus       180 ~y~aPE~~~~~~~~~~~~DvwslGv~l~ellt-g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (343)
T cd07851         180 WYRAPEIMLNWMHYNQTVDIWSVGCIMAELLT-GKTLFPGSDHIDQLKRIMNLVGTPDEELLQKISSESARNYIQSLPQM  258 (343)
T ss_pred             cccCHHHHhCCCCCCchHhHHHHHHHHHHHHh-CCCCCCCCChHHHHHHHHHhcCCCCHHHHhhccchhHHHHHHhcccc
Confidence            57899987653 56788999999999999999 9999976665544443322110                         


Q ss_pred             ---------CCCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          57 ---------LNRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        57 ---------~~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                               ...+..+.+++.+|+..+|.+|||+.++++
T Consensus       259 ~~~~~~~~~~~~s~~l~dli~~~l~~~P~~Rpt~~ell~  297 (343)
T cd07851         259 PKKDFKEVFSGANPLAIDLLEKMLVLDPDKRITAAEALA  297 (343)
T ss_pred             CCCCHHHHhccCCHHHHHHHHHhCCCChhhCCCHHHHhc
Confidence                     012344667888999999999999999864

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=99.41  E-value=5e-13  Score=71.87  Aligned_cols=83  Identities=22%  Similarity=0.453  Sum_probs=60.9

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCC--C----CCCChHHHHHHHhhCcc
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLN--R----PANCSHLIRSRNRLTEN   76 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~----~~~~~~~~~~~l~~~~~   76 (88)
                      .|++||.+....++.+.|+|++|++++++++ |..||...+..+....+.....+.  .    +..+.+++.+|+..+|.
T Consensus       180 ~y~~PE~~~~~~~~~~~Dv~slG~ll~~ll~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~  258 (293)
T cd06647         180 YWMAPEVVTRKAYGPKVDIWSLGIMAIEMVE-GEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLEMDVE  258 (293)
T ss_pred             hhcCchhhccCCCCchhhHHHHHHHHHHHHh-CCCCCCCCChhhheeehhcCCCCCCCCccccCHHHHHHHHHHccCChh
Confidence            4899999877778889999999999999999 999997665543333222222111  1    22355778888889999


Q ss_pred             cCCChhhhhh
Q psy8478          77 KAPSAVSKKR   86 (88)
Q Consensus        77 ~rp~~~~~~~   86 (88)
                      +||++.++.+
T Consensus       259 ~Rp~~~~il~  268 (293)
T cd06647         259 KRGSAKELLQ  268 (293)
T ss_pred             hCcCHHHHhc
Confidence            9999998864

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=99.41  E-value=1.3e-12  Score=70.11  Aligned_cols=84  Identities=20%  Similarity=0.274  Sum_probs=60.2

Q ss_pred             CcccCcchhccC-CCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC-------------------------
Q psy8478           2 TRWMAPECLVDG-LFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG-------------------------   55 (88)
Q Consensus         2 ~~~~~pe~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-------------------------   55 (88)
                      +.|++||.+.+. .++.+.|+|++|++++++++ |..||.+....+....+....                         
T Consensus       175 ~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (295)
T cd07837         175 LWYRAPEVLLGSTHYSTPVDIWSVGCIFAEMSR-KQPLFPGDSELQQLLHIFKLLGTPTEQVWPGVSKLRDWHEFPQWKP  253 (295)
T ss_pred             cCCCChHHhhCCCCCCchHHHHHHHHHHHHHHc-CCCCCCCCCHHHHHHHHHHHhCCCChhhCcchhhccchhhcCcccc
Confidence            358999988653 56789999999999999999 988887665444333221100                         


Q ss_pred             ------CCCCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          56 ------RLNRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        56 ------~~~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                            .+..+..+.+++..|+..+|.+||++.++.+
T Consensus       254 ~~~~~~~~~~~~~~~~~i~~~l~~~P~~R~~~~eil~  290 (295)
T cd07837         254 QDLSRAVPDLSPEGLDLLQKMLRYDPAKRISAKAALT  290 (295)
T ss_pred             hhHHHhccccCHHHHHHHHHHccCChhhcCCHHHHhc
Confidence                  0123344667888999999999999998864

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=99.41  E-value=1.3e-12  Score=69.68  Aligned_cols=84  Identities=21%  Similarity=0.356  Sum_probs=59.9

Q ss_pred             CcccCcchhccC-CCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCC------------------------
Q psy8478           2 TRWMAPECLVDG-LFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGR------------------------   56 (88)
Q Consensus         2 ~~~~~pe~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------------------------   56 (88)
                      ..|++||.+... .++.+.|+|++|++++++++ |.++|.+.........+.....                        
T Consensus       164 ~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~t-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (286)
T cd07832         164 RWYRAPELLYGARKYDPGVDLWAVGCIFAELLN-GSPLFPGENDIEQLAIVFRTLGTPNEETWPGLTSLPDYNKITFPES  242 (286)
T ss_pred             ccccCceeeeccccCCchhHHHHHHHHHHHHHc-CCcCcCCCCHHHHHHHHHHHcCCCChHHHhhccCcchhhcccCCCC
Confidence            358899987654 45789999999999999999 8877776655444433321100                        


Q ss_pred             ---------CCCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          57 ---------LNRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        57 ---------~~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                               ...+..+.+++.+|+..+|++||+++++++
T Consensus       243 ~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~l~  281 (286)
T cd07832         243 KPIPLEEIFPDASPEALDLLKGLLVYDPSKRLSAAEALR  281 (286)
T ss_pred             CcchHHHhCCCccHHHHHHHHHHhccChhhCCCHHHHhh
Confidence                     011234456888999999999999999875

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=99.41  E-value=3.4e-12  Score=67.63  Aligned_cols=82  Identities=18%  Similarity=0.438  Sum_probs=59.6

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC-CCCCCC----CChHHHHHHHhhCccc
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG-RLNRPA----NCSHLIRSRNRLTENK   77 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~----~~~~~~~~~l~~~~~~   77 (88)
                      .|++||.+....++.++|+|++|++++++++ |..||...........+.... .+..|.    .+.+++.+++ .++++
T Consensus       174 ~y~aPE~~~~~~~~~~~Dv~slG~il~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l-~~p~~  251 (265)
T cd06652         174 YWMSPEVISGEGYGRKADIWSVGCTVVEMLT-EKPPWAEFEAMAAIFKIATQPTNPVLPPHVSDHCRDFLKRIF-VEAKL  251 (265)
T ss_pred             cccChhhhcCCCCCcchhHHHHHHHHHHHhh-CCCCCCccchHHHHHHHhcCCCCCCCchhhCHHHHHHHHHHh-cChhh
Confidence            5899999877778889999999999999999 999987655444444433222 222333    3456666766 47999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||+++++++
T Consensus       252 Rp~~~~il~  260 (265)
T cd06652         252 RPSADELLR  260 (265)
T ss_pred             CCCHHHHhc
Confidence            999999875

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=99.41  E-value=2.1e-12  Score=70.05  Aligned_cols=84  Identities=18%  Similarity=0.375  Sum_probs=61.7

Q ss_pred             CcccCcchhc---cCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCC-----CCCCChHHHHHHHhh
Q psy8478           2 TRWMAPECLV---DGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLN-----RPANCSHLIRSRNRL   73 (88)
Q Consensus         2 ~~~~~pe~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~~~~l~~   73 (88)
                      ..|++||.+.   ...++.++|+|++|++++++++ |..|+...+.......+.....+.     .+....+++..|+..
T Consensus       181 ~~y~aPE~~~~~~~~~~~~~sDv~slGvil~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~  259 (313)
T cd06633         181 PYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAE-RKPPLFNMNAMSALYHIAQNDSPTLQSNEWTDSFRGFVDYCLQK  259 (313)
T ss_pred             ccccChhhccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCCCCChHHHHHHHHhcCCCCCCccccCHHHHHHHHHHccC
Confidence            3589999874   3456778999999999999999 999987766555555543332221     122356678889999


Q ss_pred             CcccCCChhhhhh
Q psy8478          74 TENKAPSAVSKKR   86 (88)
Q Consensus        74 ~~~~rp~~~~~~~   86 (88)
                      +|.+||++.++.+
T Consensus       260 ~P~~Rp~~~~~l~  272 (313)
T cd06633         260 IPQERPASAELLR  272 (313)
T ss_pred             ChhhCcCHHHHhc
Confidence            9999999998864

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=99.41  E-value=1.3e-12  Score=69.73  Aligned_cols=84  Identities=17%  Similarity=0.262  Sum_probs=62.0

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCC----------------------C--
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGR----------------------L--   57 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~----------------------~--   57 (88)
                      ..|++||.+....++.+.|+|++|++++++++ |..+|......+....+.+...                      .  
T Consensus       170 ~~~~~PE~~~~~~~~~~~Di~s~G~~l~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (287)
T cd07838         170 LWYRAPEVLLQSSYATPVDMWSVGCIFAELFR-RRPLFRGTSEADQLDKIFDVIGLPSEEEWPRNVSLPRSSFPSYTPRS  248 (287)
T ss_pred             ccccChHHhccCCCCCcchhhhHHHHHHHHHh-CCCcccCCChHHHHHHHHHHcCCCChHhcCCCcccchhhcccccccc
Confidence            35889999887778889999999999999999 8888877665555444422100                      0  


Q ss_pred             ------CCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          58 ------NRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        58 ------~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                            ..+..+.+++..|+..+|.+||+++++.+
T Consensus       249 ~~~~~~~~~~~~~~li~~~l~~dp~~Rp~~~~il~  283 (287)
T cd07838         249 FKSFVPEICEEGLDLLKKMLTFNPHKRISAFEALQ  283 (287)
T ss_pred             hhhhhhhhhHHHHHHHHHHhccCCccCCCHHHHhc
Confidence                  01123446788999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=99.41  E-value=3.3e-12  Score=67.52  Aligned_cols=84  Identities=20%  Similarity=0.475  Sum_probs=63.5

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCC--HHHHHHHHHc-CCCCCC----CCCChHHHHHHHhhC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPART--NVDVLHYVRG-GGRLNR----PANCSHLIRSRNRLT   74 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~-~~~~~~----~~~~~~~~~~~l~~~   74 (88)
                      ..|++||.+....++.+.|+|++|++++++++ |..||....  ..+....+.. ......    +..+.+++.+|+..+
T Consensus       156 ~~~~~PE~~~~~~~~~~~Di~slG~il~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~  234 (262)
T cd05572         156 PEYVAPEIILNKGYDFSVDYWSLGILLYELLT-GRPPFGEDDEDPMEIYNDILKGNGKLEFPNYIDKAAKDLIKQLLRRN  234 (262)
T ss_pred             cCccChhHhcCCCCCChhhhhhhHHHHHHHHh-CCCCcCCCCCCHHHHHHHHhccCCCCCCCcccCHHHHHHHHHHccCC
Confidence            35899999877778889999999999999999 999997665  5555555542 222222    345677888899999


Q ss_pred             cccCCC-----hhhhhh
Q psy8478          75 ENKAPS-----AVSKKR   86 (88)
Q Consensus        75 ~~~rp~-----~~~~~~   86 (88)
                      |.+||+     ++++++
T Consensus       235 p~~R~~~~~~~~~~l~~  251 (262)
T cd05572         235 PEERLGNLKGGIKDIKK  251 (262)
T ss_pred             hhhCcCCcccCHHHHhc
Confidence            999999     777754

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=99.41  E-value=1.8e-12  Score=68.89  Aligned_cols=84  Identities=19%  Similarity=0.362  Sum_probs=64.6

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC---CCCCCCCChHHHHHHHhhCcccC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG---RLNRPANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~~~~~~~~~~l~~~~~~r   78 (88)
                      ..|++||.......+.+.|+|++|++++++++ |..|+...........+....   ....+..+.+++..|+..+|.+|
T Consensus       186 ~~~~~Pe~~~~~~~~~~~Di~slG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  264 (280)
T cd05581         186 AEYVSPELLNEKPAGKSSDLWALGCIIYQMLT-GKPPFRGSNEYLTFQKILKLEYSFPPNFPPDAKDLIEKLLVLDPQDR  264 (280)
T ss_pred             ccccCHHHhCCCCCChhhhHHHHHHHHHHHHh-CCCCCCCccHHHHHHHHHhcCCCCCCccCHHHHHHHHHHhcCCHhhC
Confidence            35789998877777889999999999999999 999998766555555544321   12234567788889999999999


Q ss_pred             CCh----hhhhh
Q psy8478          79 PSA----VSKKR   86 (88)
Q Consensus        79 p~~----~~~~~   86 (88)
                      |++    +++.+
T Consensus       265 ~~~~~~~~~ll~  276 (280)
T cd05581         265 LGVNEGYDELKA  276 (280)
T ss_pred             CCcccCHHHHhc
Confidence            999    77764

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=99.41  E-value=1.6e-12  Score=69.42  Aligned_cols=83  Identities=24%  Similarity=0.406  Sum_probs=59.7

Q ss_pred             cccCcchhcc-CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcC--------------------CC-----
Q psy8478           3 RWMAPECLVD-GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGG--------------------GR-----   56 (88)
Q Consensus         3 ~~~~pe~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--------------------~~-----   56 (88)
                      .|++||.+.+ ..++.++|+|++|++++++++ |..||.+....+....+...                    ..     
T Consensus       165 ~~~aPE~~~~~~~~~~~~Di~slG~i~~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (286)
T cd07847         165 WYRAPELLVGDTQYGPPVDVWAIGCVFAELLT-GQPLWPGKSDVDQLYLIRKTLGDLIPRHQQIFSTNQFFKGLSIPEPE  243 (286)
T ss_pred             ccCCHHHHhCCCCcCchhhhHHHHHHHHHHHh-CCCCCCCCChHHHHHHHHHHhCCCChHHhhhcccccccccccCCCcc
Confidence            5789998765 356788999999999999999 99999776654433332110                    00     


Q ss_pred             ---------CCCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          57 ---------LNRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        57 ---------~~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                               ...+..+.+++.+|+..+|.+||++.++.+
T Consensus       244 ~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~eil~  282 (286)
T cd07847         244 TREPLESKFPNISSPALSFLKGCLQMDPTERLSCEELLE  282 (286)
T ss_pred             cccCHHHHhccCCHHHHHHHHHHhcCCccccCCHHHHhc
Confidence                     011233457888899999999999999865

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=99.41  E-value=1.9e-12  Score=70.78  Aligned_cols=84  Identities=18%  Similarity=0.368  Sum_probs=59.0

Q ss_pred             CcccCcchhcc-CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHc---------------------------
Q psy8478           2 TRWMAPECLVD-GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRG---------------------------   53 (88)
Q Consensus         2 ~~~~~pe~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---------------------------   53 (88)
                      ..|++||.+.. ..++.++|+|++|++++++++ |..||.+.+.......+..                           
T Consensus       173 ~~y~aPE~~~~~~~~~~~~DvwslGvil~el~~-G~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (336)
T cd07849         173 RWYRAPEIMLNSKGYTKAIDIWSVGCILAEMLS-NRPLFPGKDYLHQLNLILGVLGTPSQEDLNCIISLRARNYIKSLPF  251 (336)
T ss_pred             CCccChHHhhCCCCCCcHHHHHHHHHHHHHHHh-CCCCCCCCCHHHHHHHHHHHcCCCCHHHHHHhhchhhhhHHhhcCc
Confidence            35899998654 457889999999999999999 9999876544332221110                           


Q ss_pred             CCC-------CCCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          54 GGR-------LNRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        54 ~~~-------~~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                      ...       +..+..+.+++.+|+..+|.+||++.++++
T Consensus       252 ~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~e~l~  291 (336)
T cd07849         252 KPKVPWNKLFPNADPKALDLLDKMLTFNPHKRITVEEALA  291 (336)
T ss_pred             CCcccHHHHhcccCcHHHHHHHHHcCCChhhCcCHHHHhc
Confidence            000       011334567888999999999999999865

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=99.41  E-value=9.7e-13  Score=71.84  Aligned_cols=78  Identities=21%  Similarity=0.428  Sum_probs=56.6

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCC--------C-HHHHHHHHHcCCCCCCCC----CChHHHH
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPAR--------T-NVDVLHYVRGGGRLNRPA----NCSHLIR   68 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~-~~~~~~~i~~~~~~~~~~----~~~~~~~   68 (88)
                      +.|++||.+.+..++.++|+|++|++++++++ |..||...        . .......+... ....|.    .+.+++.
T Consensus       160 ~~y~aPE~~~~~~~~~~~DiwslG~il~el~~-g~~Pf~~~~~~~~~~~~~~~~~~~~i~~~-~~~~p~~~~~~~~~ll~  237 (329)
T cd05618         160 PNYIAPEILRGEDYGFSVDWWALGVLMFEMMA-GRSPFDIVGSSDNPDQNTEDYLFQVILEK-QIRIPRSLSVKAASVLK  237 (329)
T ss_pred             ccccCHHHHcCCCCCCccceecccHHHHHHhh-CCCCCccCCCcCCcccccHHHHHHHHhcC-CCCCCCCCCHHHHHHHH
Confidence            46899999988888889999999999999999 99998421        1 11223333332 223333    3457888


Q ss_pred             HHHhhCcccCCCh
Q psy8478          69 SRNRLTENKAPSA   81 (88)
Q Consensus        69 ~~l~~~~~~rp~~   81 (88)
                      +|+..+|.+|+++
T Consensus       238 ~~L~~dP~~R~~~  250 (329)
T cd05618         238 SFLNKDPKERLGC  250 (329)
T ss_pred             HHhcCCHHHcCCC
Confidence            8999999999985

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=99.40  E-value=2.6e-12  Score=69.25  Aligned_cols=83  Identities=17%  Similarity=0.275  Sum_probs=59.5

Q ss_pred             cccCcchhccC-CCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC-C------------------------
Q psy8478           3 RWMAPECLVDG-LFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG-R------------------------   56 (88)
Q Consensus         3 ~~~~pe~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~------------------------   56 (88)
                      .|++||.+.+. .++.+.|+|++|++++++++ |..||.+.........+.... .                        
T Consensus       191 ~y~aPE~~~~~~~~~~~~Dv~slG~il~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (311)
T cd07866         191 WYRPPELLLGERRYTTAVDIWGIGCVFAEMFT-RRPILQGKSDIDQLHLIFKLCGTPTEETWPGWRSLPGCEGVHSFTNY  269 (311)
T ss_pred             CcCChHHhhCCCccCchhHhHHHHHHHHHHHh-CCCCCCCCCHHHHHHHHHHHhCCCChhhchhhhhcccccccccCCCC
Confidence            48999987654 46788999999999999999 999987666544333322100 0                        


Q ss_pred             --------CCCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          57 --------LNRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        57 --------~~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                              ......+.+++..|+..+|.+||++.+++.
T Consensus       270 ~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~t~~ell~  307 (311)
T cd07866         270 PRTLEERFGKLGPEGLDLLSKLLSLDPYKRLTASDALE  307 (311)
T ss_pred             CccHHHHcccCChhHHHHHHHHcccCcccCcCHHHHhc
Confidence                    001123457888999999999999998864

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=99.40  E-value=6.8e-14  Score=76.22  Aligned_cols=78  Identities=21%  Similarity=0.425  Sum_probs=61.4

Q ss_pred             CcccCcchhccC-CCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCC-CC---CCCCChHHHHHHHhhCcc
Q psy8478           2 TRWMAPECLVDG-LFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGR-LN---RPANCSHLIRSRNRLTEN   76 (88)
Q Consensus         2 ~~~~~pe~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~---~~~~~~~~~~~~l~~~~~   76 (88)
                      +.|++||.+... .++.++|+|++|++++++++ |..||.+....+....+..+.. .+   .+..+.+++..|+..+|.
T Consensus       160 ~~y~aPE~~~~~~~~~~~~DvwslGvil~ellt-G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~li~~~L~~~P~  238 (330)
T cd05586         160 TEYLAPEVLLDEKGYTKHVDFWSLGVLVFEMCC-GWSPFYAEDTQQMYRNIAFGKVRFPKNVLSDEGRQFVKGLLNRNPQ  238 (330)
T ss_pred             ccccCHHHHcCCCCCCCccceeccccEEEEecc-CCCCCCCCCHHHHHHHHHcCCCCCCCccCCHHHHHHHHHHcCCCHH
Confidence            469999998754 47888999999999999999 9999988877777777654422 11   234566788899999999


Q ss_pred             cCCC
Q psy8478          77 KAPS   80 (88)
Q Consensus        77 ~rp~   80 (88)
                      +||+
T Consensus       239 ~R~~  242 (330)
T cd05586         239 HRLG  242 (330)
T ss_pred             HCCC
Confidence            9984

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=99.40  E-value=4.1e-12  Score=68.34  Aligned_cols=83  Identities=22%  Similarity=0.334  Sum_probs=60.1

Q ss_pred             cccCcchhccCC----CCchhhHHHHHHHHHHHHhcCCCCCCCCC-HHHHHHHHHcCCCCC------CCCCChHHHHHHH
Q psy8478           3 RWMAPECLVDGL----FSSQSDVWAFGVLLWEIMSLGQQPYPART-NVDVLHYVRGGGRLN------RPANCSHLIRSRN   71 (88)
Q Consensus         3 ~~~~pe~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~------~~~~~~~~~~~~l   71 (88)
                      .|++||.+....    ++.++|+|++|++++++++ |..||.... ..+....+.......      .+..+.+++..|+
T Consensus       179 ~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l  257 (296)
T cd06618         179 AYMAPERIDPPDPNPKYDIRADVWSLGISLVELAT-GQFPYKNCKTEFEVLTKILQEEPPSLPPNEGFSPDFCSFVDLCL  257 (296)
T ss_pred             cccCHhhcCCCCCccccccchhHHHHHHHHHHHHh-CCCCCCcchhHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHc
Confidence            588999886443    6678999999999999999 999986533 233444443332221      2334567888899


Q ss_pred             hhCcccCCChhhhhh
Q psy8478          72 RLTENKAPSAVSKKR   86 (88)
Q Consensus        72 ~~~~~~rp~~~~~~~   86 (88)
                      ..+|.+||+++++++
T Consensus       258 ~~~p~~Rp~~~~il~  272 (296)
T cd06618         258 TKDHRKRPKYRELLQ  272 (296)
T ss_pred             cCChhhCCCHHHHhc
Confidence            999999999999865

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>KOG0660|consensus

Probab=99.40  E-value=9.1e-13  Score=71.51  Aligned_cols=82  Identities=20%  Similarity=0.333  Sum_probs=62.3

Q ss_pred             ccCcchhcc-CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCC-------------------------C
Q psy8478           4 WMAPECLVD-GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGR-------------------------L   57 (88)
Q Consensus         4 ~~~pe~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-------------------------~   57 (88)
                      |.|||.+.. ..|+...|+||.||++.++++ |++.|.+.+....++.|.+-..                         +
T Consensus       193 YRAPElll~~~~Yt~aiDiWSvGCI~AEmL~-gkplFpG~d~v~Ql~lI~~~lGtP~~e~l~~i~s~~ar~yi~slp~~p  271 (359)
T KOG0660|consen  193 YRAPELLLNSSEYTKAIDIWSVGCILAEMLT-GKPLFPGKDYVHQLQLILELLGTPSEEDLQKIRSEKARPYIKSLPQIP  271 (359)
T ss_pred             ecCHHHHhccccccchhhhhhhhHHHHHHHc-CCCCCCCCchHHHHHHHHHhcCCCCHHHHHHhccHHHHHHHHhCCCCC
Confidence            468998765 478999999999999999999 9999998887766665533110                         0


Q ss_pred             C---------CCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          58 N---------RPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        58 ~---------~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                      +         ....+-+++.++|.-+|.+|+|+++.++
T Consensus       272 ~~~f~~~fp~a~p~AidLlekmL~fdP~kRita~eAL~  309 (359)
T KOG0660|consen  272 KQPFSSIFPNANPLAIDLLEKMLVFDPKKRITAEEALA  309 (359)
T ss_pred             CCCHHHHcCCCCHHHHHHHHHHhccCccccCCHHHHhc
Confidence            0         1112456888999999999999998764

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.40  E-value=2.3e-12  Score=67.91  Aligned_cols=86  Identities=29%  Similarity=0.487  Sum_probs=61.4

Q ss_pred             CcccCcchhccC--CCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCC--CCCChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDG--LFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNR--PANCSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~l~~~~~~   77 (88)
                      ..|++||.+...  .++.+.|+|++|++++++++.+..|+......+...........+.  ...+.+++.+|+..+|.+
T Consensus       168 ~~y~aPE~~~~~~~~~~~~~Di~slG~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~  247 (259)
T cd05037         168 IPWIAPECIRNGQASLTIAADKWSFGTTLLEICSNGEEPLSTLSSSEKERFYQDQHRLPMPDCAELANLINQCWTYDPTK  247 (259)
T ss_pred             CCccChhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCCCcccCCchhHHHHHhcCCCCCCCCchHHHHHHHHHhccChhh
Confidence            358899998765  6778999999999999988845677765543333322222222222  245678889999999999


Q ss_pred             CCChhhhhhc
Q psy8478          78 APSAVSKKRI   87 (88)
Q Consensus        78 rp~~~~~~~~   87 (88)
                      ||++.++.+.
T Consensus       248 Rpt~~~il~~  257 (259)
T cd05037         248 RPSFRAILRD  257 (259)
T ss_pred             CCCHHHHHHh
Confidence            9999998763

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=99.40  E-value=2.7e-12  Score=66.71  Aligned_cols=84  Identities=24%  Similarity=0.454  Sum_probs=63.9

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCC-CCHHHHHHHHHcCCCCC------CCCCChHHHHHHHhhC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPA-RTNVDVLHYVRGGGRLN------RPANCSHLIRSRNRLT   74 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~l~~~   74 (88)
                      ..|++||......++.+.|+|++|++++++++ +..|+.. .........+.......      .+..+.+.+.+|+..+
T Consensus       150 ~~~~~pE~~~~~~~~~~~Di~slG~~l~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~  228 (244)
T smart00220      150 PEYMAPEVLLGKGYGKAVDVWSLGVILYELLT-GKPPFPGDDQLLELFKKIGKPKPPFPPPEWKISPEAKDLIRKLLVKD  228 (244)
T ss_pred             cCCCCHHHHccCCCCchhhHHHHHHHHHHHHh-CCCCCCCCCcHHHHHHHHhccCCCCccccccCCHHHHHHHHHHccCC
Confidence            35789998877777889999999999999999 8889876 45555555544333221      3445667888899999


Q ss_pred             cccCCChhhhhh
Q psy8478          75 ENKAPSAVSKKR   86 (88)
Q Consensus        75 ~~~rp~~~~~~~   86 (88)
                      |+.||++.++.+
T Consensus       229 p~~Rp~~~~~~~  240 (244)
T smart00220      229 PEKRLTAEEALQ  240 (244)
T ss_pred             chhccCHHHHhh
Confidence            999999999875

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=99.40  E-value=5.5e-12  Score=66.96  Aligned_cols=84  Identities=26%  Similarity=0.522  Sum_probs=56.0

Q ss_pred             cccCcchhcc-------CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC-----CCCCCChH----H
Q psy8478           3 RWMAPECLVD-------GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRL-----NRPANCSH----L   66 (88)
Q Consensus         3 ~~~~pe~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~~~~----~   66 (88)
                      .|++||....       ..++.++|+|++|++++++++.|..||......+....+......     ..+..++.    .
T Consensus       167 ~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (269)
T cd05042         167 RWLAPELVEIRGQDLLPKDQTKKSNIWSLGVTMWELFTAADQPYPDLSDEQVLKQVVREQDIKLPKPQLDLKYSDRWYEV  246 (269)
T ss_pred             cccCHHHHhhccccccccccchhhHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHhhccCccCCCCcccccCCHHHHHH
Confidence            5899998642       245678999999999999988567788766655555444322211     11223333    3


Q ss_pred             HHHHHhhCcccCCChhhhhhc
Q psy8478          67 IRSRNRLTENKAPSAVSKKRI   87 (88)
Q Consensus        67 ~~~~l~~~~~~rp~~~~~~~~   87 (88)
                      +..|+ .+|.+||+++++.++
T Consensus       247 ~~~~~-~dp~~Rpt~~~v~~~  266 (269)
T cd05042         247 MQFCW-LDPETRPTAEEVHEL  266 (269)
T ss_pred             HHHHh-cCcccccCHHHHHHH
Confidence            33333 589999999999875

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=99.40  E-value=6.5e-13  Score=73.73  Aligned_cols=84  Identities=25%  Similarity=0.355  Sum_probs=58.0

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcC-CCCCC------CCCChHHHHHHHhhC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGG-GRLNR------PANCSHLIRSRNRLT   74 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~------~~~~~~~~~~~l~~~   74 (88)
                      +.|++||.+....++.++|+|++|++++++++ |..||......+....+... .....      +..+.+++.+++...
T Consensus       212 ~~Y~aPE~~~~~~~~~~~DiwSlG~il~ellt-G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~dli~~ll~~~  290 (381)
T cd05626         212 PNYIAPEVLLRKGYTQLCDWWSVGVILFEMLV-GQPPFLAPTPTETQLKVINWENTLHIPPQVKLSPEAVDLITKLCCSA  290 (381)
T ss_pred             ccccCHHHHcCCCCCCccceeehhhHHHHHHh-CCCCCcCCCHHHHHHHHHccccccCCCCCCCCCHHHHHHHHHHccCc
Confidence            46999999988888899999999999999999 99999877665555444321 11112      223444555544333


Q ss_pred             --cccCCChhhhhh
Q psy8478          75 --ENKAPSAVSKKR   86 (88)
Q Consensus        75 --~~~rp~~~~~~~   86 (88)
                        +..|+++.++.+
T Consensus       291 ~~~~~R~~~~~~l~  304 (381)
T cd05626         291 EERLGRNGADDIKA  304 (381)
T ss_pred             ccccCCCCHHHHhc
Confidence              334899988864

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=99.40  E-value=2.5e-12  Score=67.83  Aligned_cols=81  Identities=22%  Similarity=0.383  Sum_probs=63.0

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCC-C-CC---CCCChHHHHHHHhhCccc
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGR-L-NR---PANCSHLIRSRNRLTENK   77 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~-~~---~~~~~~~~~~~l~~~~~~   77 (88)
                      .|++||.......+.+.|+|++|++++++++ |..||......+....+..+.. . ..   +..+.+++.+|+..+|.+
T Consensus       166 ~~~~Pe~~~~~~~~~~~Dv~slG~~~~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~  244 (265)
T cd05579         166 DYIAPEVILGQGHSKTVDWWSLGCILYEFLV-GIPPFHGETPEEIFQNILNGKIEWPEDVEVSDEAIDLISKLLVPDPEK  244 (265)
T ss_pred             cccCHHHhcCCCCCcchhhHHHHHHHHHHHh-CCCCCCCCCHHHHHHHHhcCCcCCCccccCCHHHHHHHHHHhcCCHhh
Confidence            5789998877777788999999999999999 9999987777776666654321 1 11   345677888899999999


Q ss_pred             CCChhhh
Q psy8478          78 APSAVSK   84 (88)
Q Consensus        78 rp~~~~~   84 (88)
                      ||++..+
T Consensus       245 Rpt~~~~  251 (265)
T cd05579         245 RLGAKSI  251 (265)
T ss_pred             cCCCccH
Confidence            9999444

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=99.40  E-value=1.7e-12  Score=69.74  Aligned_cols=85  Identities=31%  Similarity=0.519  Sum_probs=61.5

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHh-cCCCCCCCCCHHHHHHHHHc-----CC------CCCCCCCChHHHHHH
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMS-LGQQPYPARTNVDVLHYVRG-----GG------RLNRPANCSHLIRSR   70 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~-----~~------~~~~~~~~~~~~~~~   70 (88)
                      .|++||.+....++.++|+|++|++++++++ .+..||......+....+..     +.      ....|..+.+++..|
T Consensus       196 ~y~aPE~~~~~~~~~~~DvwSlG~~l~el~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~  275 (295)
T cd05097         196 RWMAWESILLGKFTTASDVWAFGVTLWEMFTLCKEQPYSLLSDEQVIENTGEFFRNQGRQIYLSQTPLCPSPVFKLMMRC  275 (295)
T ss_pred             eecChhhhccCCcCchhhHHHHHHHHHHHHHcCCCCCCcccChHHHHHHHHHhhhhccccccCCCCCCCCHHHHHHHHHH
Confidence            5899998887788899999999999999876 24567765555444433311     11      112234566788899


Q ss_pred             HhhCcccCCChhhhhhc
Q psy8478          71 NRLTENKAPSAVSKKRI   87 (88)
Q Consensus        71 l~~~~~~rp~~~~~~~~   87 (88)
                      +..+|.+||++.++.+.
T Consensus       276 l~~~p~~RPs~~~i~~~  292 (295)
T cd05097         276 WSRDIKDRPTFNKIHHF  292 (295)
T ss_pred             cCCCchhCcCHHHHHHH
Confidence            99999999999999764

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=99.39  E-value=1.5e-12  Score=69.53  Aligned_cols=83  Identities=23%  Similarity=0.381  Sum_probs=58.9

Q ss_pred             cccCcchhccC-CCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcC--------------------C------
Q psy8478           3 RWMAPECLVDG-LFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGG--------------------G------   55 (88)
Q Consensus         3 ~~~~pe~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--------------------~------   55 (88)
                      .|++||.+.+. .++.++|+|++|++++++++ |.++|......+....+...                    .      
T Consensus       165 ~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (286)
T cd07846         165 WYRAPELLVGDTKYGRAVDIWAVGCLVTEMLT-GEPLFPGDSDIDQLYHIIKCLGNLIPRHQEIFQKNPLFAGMRLPEVK  243 (286)
T ss_pred             eccCcHHhccccccCchHhHHHHHHHHHHHHc-CCCCCCCCchHHHHHHHHHHhCCCchhhHHHhccchHhhcccccccc
Confidence            57899988653 46778999999999999999 88888765543332222110                    0      


Q ss_pred             --------CCCCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          56 --------RLNRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        56 --------~~~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                              ....+..+.+++..|+..+|.+||++.++.+
T Consensus       244 ~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~  282 (286)
T cd07846         244 EIEPLEKRFPKLSGLVLDLAKQCLRIDPDDRPSSSQLLH  282 (286)
T ss_pred             CcchHHHhCCCcCHHHHHHHHHHhcCCcccchhHHHHhc
Confidence                    0122344667888999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=99.39  E-value=2.1e-12  Score=68.76  Aligned_cols=83  Identities=20%  Similarity=0.342  Sum_probs=60.3

Q ss_pred             cccCcchhccC-CCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCC-------------------------
Q psy8478           3 RWMAPECLVDG-LFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGR-------------------------   56 (88)
Q Consensus         3 ~~~~pe~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-------------------------   56 (88)
                      .|++||.+... .++.+.|+|++|++++++++ |..+|.+.+..+....+.....                         
T Consensus       163 ~~~~PE~~~~~~~~~~~~Di~slG~~l~~l~t-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (283)
T cd05118         163 WYRAPELLLGDKGYSTPVDIWSVGCIFAELLS-RRPLFPGKSEIDQLFKIFRTLGTPDPEVWPKFTSLARNYKFSFPKKA  241 (283)
T ss_pred             cccCcHHHhcCCCCCchhHHHHHHHHHHHHHh-CCCCCCCCCHHHHHHHHHHHcCCCchHhcccchhhhhhhhhhhcccc
Confidence            47899988765 67789999999999999999 9889877665444333321100                         


Q ss_pred             --------CCCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          57 --------LNRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        57 --------~~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                              ...+..+.+++.+|+..+|.+||++.++..
T Consensus       242 ~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~ll~  279 (283)
T cd05118         242 GMPLPKLFPNASPQALDLLSQMLHYDPHKRITAEQALA  279 (283)
T ss_pred             ccCHHHhhhhhCHHHHHHHHHHhccCcccCcCHHHHhh
Confidence                    011234557888899999999999999864

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=99.39  E-value=1e-13  Score=75.50  Aligned_cols=83  Identities=22%  Similarity=0.397  Sum_probs=62.2

Q ss_pred             CcccCcchhc------cCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCC-C------CCCCCChHHHH
Q psy8478           2 TRWMAPECLV------DGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGR-L------NRPANCSHLIR   68 (88)
Q Consensus         2 ~~~~~pe~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~------~~~~~~~~~~~   68 (88)
                      +.|++||.+.      ...++.++|+|++|++++++++ |..||......+....+..... .      ..+..+.+++.
T Consensus       167 ~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~  245 (330)
T cd05601         167 PDYIAPEVLTTMNGDGKGTYGVECDWWSLGVIAYEMIY-GRSPFHEGTSAKTYNNIMNFQRFLKFPEDPKVSSDFLDLIQ  245 (330)
T ss_pred             ccccCHHHhccccccccCCCCCcceeecccceeeeecc-CCCCCCCCCHHHHHHHHHcCCCccCCCCCCCCCHHHHHHHH
Confidence            4689999886      3356778999999999999999 9999987776666666543321 1      12334567778


Q ss_pred             HHHhhCcccCCChhhhhh
Q psy8478          69 SRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        69 ~~l~~~~~~rp~~~~~~~   86 (88)
                      .++. ++.+||+++++.+
T Consensus       246 ~ll~-~p~~R~t~~~l~~  262 (330)
T cd05601         246 SLLC-GQKERLGYEGLCC  262 (330)
T ss_pred             HHcc-ChhhCCCHHHHhC
Confidence            8886 8999999998764

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.39  E-value=3.4e-12  Score=68.22  Aligned_cols=84  Identities=30%  Similarity=0.483  Sum_probs=58.2

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCH---------------HHHHHHHHcCCCCC----CCCCC
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTN---------------VDVLHYVRGGGRLN----RPANC   63 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~i~~~~~~~----~~~~~   63 (88)
                      .|++||......++.++|+|++|++++++++ |..|+.....               ......+..+...+    .+..+
T Consensus       175 ~~~~PE~~~~~~~~~~~Di~slG~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (283)
T cd05080         175 FWYAVECLKENKFSYASDVWSFGVTLYELLT-HCDSKQSPPKKFEEMIGPKQGQMTVVRLIELLERGMRLPCPKNCPQEV  253 (283)
T ss_pred             eeeCHhHhcccCCCcccccHHHHHHHHHHHh-CCCCCCCCcchhhhhhcccccccchhhhhhhhhcCCCCCCCCCCCHHH
Confidence            4789998877778889999999999999999 8877753221               01111111122222    23445


Q ss_pred             hHHHHHHHhhCcccCCChhhhhhc
Q psy8478          64 SHLIRSRNRLTENKAPSAVSKKRI   87 (88)
Q Consensus        64 ~~~~~~~l~~~~~~rp~~~~~~~~   87 (88)
                      .+++.+|+..+|++||++.++.+.
T Consensus       254 ~~li~~cl~~~p~~Rps~~~i~~~  277 (283)
T cd05080         254 YILMKNCWETEAKFRPTFRSLIPI  277 (283)
T ss_pred             HHHHHHHhccChhhCCCHHHHHHH
Confidence            667788888899999999998754

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>PHA03209 serine/threonine kinase US3; Provisional

Probab=99.39  E-value=2.6e-12  Score=70.85  Aligned_cols=39  Identities=26%  Similarity=0.611  Sum_probs=32.9

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYP   40 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   40 (88)
                      +.|++||.+....++.++|+|++|+++++++.++..+|.
T Consensus       220 ~~y~aPE~~~~~~~~~~~DiwSlGvvl~ell~~~~~~f~  258 (357)
T PHA03209        220 VETNAPEVLARDKYNSKADIWSAGIVLFEMLAYPSTIFE  258 (357)
T ss_pred             ccccCCeecCCCCCCchhhHHHHHHHHHHHHHcCCcccc
Confidence            468999999888889999999999999999884555544

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=99.39  E-value=7.1e-12  Score=65.78  Aligned_cols=84  Identities=23%  Similarity=0.392  Sum_probs=62.7

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCC----CCChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRP----ANCSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~l~~~~~~   77 (88)
                      ..|++||.......+.+.|+|++|+++++++. |..|+...........+........+    ..+.+++.+|+..+|++
T Consensus       163 ~~y~~pe~~~~~~~~~~~Dv~~lG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~  241 (254)
T cd06627         163 PYWMAPEVIEMSGASTASDIWSLGCTVIELLT-GNPPYYDLNPMAALFRIVQDDHPPLPEGISPELKDFLMQCFQKDPNL  241 (254)
T ss_pred             hhhcCHhhhcCCCCCcchhHHHHHHHHHHHHh-CCCCCCCccHHHHHHHHhccCCCCCCCCCCHHHHHHHHHHHhCChhh
Confidence            35889998876667788999999999999999 98998766654444444333333333    34556777888899999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||++.++..
T Consensus       242 R~~~~~~l~  250 (254)
T cd06627         242 RPTAKQLLK  250 (254)
T ss_pred             CcCHHHHhc
Confidence            999999864

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=99.39  E-value=3.9e-12  Score=68.55  Aligned_cols=84  Identities=18%  Similarity=0.230  Sum_probs=58.9

Q ss_pred             CcccCcchhccC-CCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHc--C-CCC---------------C----
Q psy8478           2 TRWMAPECLVDG-LFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRG--G-GRL---------------N----   58 (88)
Q Consensus         2 ~~~~~pe~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~-~~~---------------~----   58 (88)
                      ..|++||.+... .++.++|+|++|++++++++ |..++.+.........+..  + .+.               .    
T Consensus       187 ~~y~aPE~~~~~~~~~~~~Di~slG~~l~el~t-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (310)
T cd07865         187 LWYRPPELLLGERDYGPPIDMWGAGCIMAEMWT-RSPIMQGNTEQHQLTLISQLCGSITPEVWPGVDKLELFKKMELPQG  265 (310)
T ss_pred             ccccCcHHhcCCcccCchhhhHHHHHHHHHHHh-CCCCCCCCCHHHHHHHHHHHhCCCChhhcccccchhhhhhccCCCc
Confidence            358999987654 36778999999999999999 8888876654433322211  0 000               0    


Q ss_pred             -------------CCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          59 -------------RPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        59 -------------~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                                   ....+.+++.+|+..+|.+||+++++++
T Consensus       266 ~~~~~~~~l~~~~~~~~~~dli~~~l~~~P~~R~t~~e~l~  306 (310)
T cd07865         266 QKRKVKERLKPYVKDPHALDLIDKLLVLDPAKRIDADTALN  306 (310)
T ss_pred             cchhhHHhcccccCCHHHHHHHHHHhcCChhhccCHHHHhc
Confidence                         0112346899999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>KOG0661|consensus

Probab=99.39  E-value=3.1e-12  Score=71.90  Aligned_cols=82  Identities=26%  Similarity=0.436  Sum_probs=63.4

Q ss_pred             ccCcchhcc-CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC--C------------------C-----
Q psy8478           4 WMAPECLVD-GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG--R------------------L-----   57 (88)
Q Consensus         4 ~~~pe~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~------------------~-----   57 (88)
                      |.|||++.. ..|+.+.|+|++||+++|+.. -++.|.+.+..+.+.+|.+..  +                  .     
T Consensus       175 YRAPEvLLrs~~Ys~pvD~wA~GcI~aEl~s-LrPLFPG~sE~Dqi~KIc~VLGtP~~~~~~eg~~La~~mnf~~P~~~~  253 (538)
T KOG0661|consen  175 YRAPEVLLRSGYYSSPVDMWAVGCIMAELYS-LRPLFPGASEIDQIYKICEVLGTPDKDSWPEGYNLASAMNFRFPQVKP  253 (538)
T ss_pred             ccchHHhhhccccCCchHHHHHHHHHHHHHH-hcccCCCCcHHHHHHHHHHHhCCCccccchhHHHHHHHhccCCCcCCC
Confidence            479999875 478899999999999999988 788888888877777764311  0                  0     


Q ss_pred             --------CCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          58 --------NRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        58 --------~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                              ....++.+++..|+..||.+||||++..+
T Consensus       254 ~~l~~L~p~~s~~~~~li~~ll~WDP~kRpTA~~al~  290 (538)
T KOG0661|consen  254 SPLKDLLPNASSEAASLIERLLAWDPDKRPTASQALQ  290 (538)
T ss_pred             CChHHhCcccCHHHHHHHHHHhcCCCccCccHHHHhc
Confidence                    11223556888899999999999999865

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=99.39  E-value=3.9e-12  Score=67.60  Aligned_cols=85  Identities=28%  Similarity=0.488  Sum_probs=56.7

Q ss_pred             CcccCcchhcc-------CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCC-----CCCC----CCChH
Q psy8478           2 TRWMAPECLVD-------GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGR-----LNRP----ANCSH   65 (88)
Q Consensus         2 ~~~~~pe~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----~~~~----~~~~~   65 (88)
                      ..|++||.+..       ..++.++|+|++|++++++++.+..||......+....+..+..     +..+    ..+.+
T Consensus       165 ~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (268)
T cd05086         165 LRWLAPELVGEFHGGLITAEQTKPSNVWALGVTLWELFENAAQPYSHLSDREVLNHVIKDQQVKLFKPQLELPYSERWYE  244 (268)
T ss_pred             ccccCchhcccccCccccCCCCCcchhHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHhhcccccCCCccCCCCcHHHHH
Confidence            46899998642       23456899999999999998756778876666655554432211     1112    22334


Q ss_pred             HHHHHHhhCcccCCChhhhhhc
Q psy8478          66 LIRSRNRLTENKAPSAVSKKRI   87 (88)
Q Consensus        66 ~~~~~l~~~~~~rp~~~~~~~~   87 (88)
                      .+..|+ .+|.+||+++++.+.
T Consensus       245 l~~~c~-~~P~~Rp~~~~i~~~  265 (268)
T cd05086         245 VLQFCW-LSPEKRATAEEVHRL  265 (268)
T ss_pred             HHHHHh-hCcccCCCHHHHHHH
Confidence            555565 569999999999764

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=99.39  E-value=2.7e-12  Score=68.66  Aligned_cols=84  Identities=25%  Similarity=0.503  Sum_probs=59.9

Q ss_pred             CcccCcchhccCC------CCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHH---HHcCCCCCCC----CCChHHHH
Q psy8478           2 TRWMAPECLVDGL------FSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHY---VRGGGRLNRP----ANCSHLIR   68 (88)
Q Consensus         2 ~~~~~pe~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---i~~~~~~~~~----~~~~~~~~   68 (88)
                      ..|++||.+....      ++.++|+|++|++++++++ |..||...........   +..+.....+    ..+.+++.
T Consensus       165 ~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~  243 (286)
T cd06622         165 QSYMAPERIKSGGPNQNPTYTVQSDVWSLGLSILEMAL-GRYPYPPETYANIFAQLSAIVDGDPPTLPSGYSDDAQDFVA  243 (286)
T ss_pred             cCccCcchhcCCCCCccCCCCcccchHhHHHHHHHHHh-CCCCCCCcchhhHHHHHHHHhhcCCCCCCcccCHHHHHHHH
Confidence            3588999875432      4678999999999999999 9999976544333332   3333333333    34566778


Q ss_pred             HHHhhCcccCCChhhhhh
Q psy8478          69 SRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        69 ~~l~~~~~~rp~~~~~~~   86 (88)
                      +|+..+|.+||++.++..
T Consensus       244 ~~l~~~p~~Rp~~~~l~~  261 (286)
T cd06622         244 KCLNKIPNRRPTYAQLLE  261 (286)
T ss_pred             HHcccCcccCCCHHHHhc
Confidence            888899999999998864

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=99.38  E-value=3.9e-12  Score=68.29  Aligned_cols=84  Identities=20%  Similarity=0.296  Sum_probs=60.3

Q ss_pred             CcccCcchhccC-CCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC-------------------------
Q psy8478           2 TRWMAPECLVDG-LFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG-------------------------   55 (88)
Q Consensus         2 ~~~~~pe~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-------------------------   55 (88)
                      ..|++||.+.+. .++.++|+|++|++++++++ |..||...........+....                         
T Consensus       170 ~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~-g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (293)
T cd07843         170 LWYRAPELLLGAKEYSTAIDMWSVGCIFAELLT-KKPLFPGKSEIDQLNKIFKLLGTPTEKIWPGFSELPGAKKKTFTKY  248 (293)
T ss_pred             ccccCchhhcCCccccchhhHHHHHHHHHHHHh-CCCCCCCCChHHHHHHHHHHhCCCchHHHHHhhccchhcccccccc
Confidence            358999988654 35778999999999999999 999987665544433321100                         


Q ss_pred             ---------CCC-CCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          56 ---------RLN-RPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        56 ---------~~~-~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                               +.. .+....+++.+|+..+|.+||++.++.+
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~t~~ell~  289 (293)
T cd07843         249 PYNQLRKKFPALSLSDNGFDLLNRLLTYDPAKRISAEDALK  289 (293)
T ss_pred             cchhhhccccccCCChHHHHHHHHHhccCccccCCHHHHhc
Confidence                     000 1333557889999999999999999865

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=99.38  E-value=2.9e-12  Score=68.76  Aligned_cols=83  Identities=20%  Similarity=0.449  Sum_probs=62.4

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCC----CCCChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNR----PANCSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~l~~~~~~   77 (88)
                      +.|++||.+.....+.+.|+|++|++++++++ |..||......+....+..+. ...    +..+.+++.+|+..+|.+
T Consensus       162 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~-g~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~li~~~l~~~p~~  239 (290)
T cd05580         162 PEYLAPEIILSKGYGKAVDWWALGILIYEMLA-GYPPFFDDNPIQIYEKILEGK-VRFPSFFSPDAKDLIRNLLQVDLTK  239 (290)
T ss_pred             ccccChhhhcCCCCCccccHHHHHHHHHHHHh-CCCCCCCCCHHHHHHHHhcCC-ccCCccCCHHHHHHHHHHccCCHHH
Confidence            46899999877777788999999999999999 999998777666666655432 223    334556777888888999


Q ss_pred             CC-----Chhhhhh
Q psy8478          78 AP-----SAVSKKR   86 (88)
Q Consensus        78 rp-----~~~~~~~   86 (88)
                      |+     +++++.+
T Consensus       240 R~~~~~~~~~~l~~  253 (290)
T cd05580         240 RLGNLKNGVNDIKN  253 (290)
T ss_pred             ccCcccCCHHHHHc
Confidence            98     6666543

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=99.38  E-value=3.8e-12  Score=67.58  Aligned_cols=84  Identities=30%  Similarity=0.573  Sum_probs=56.1

Q ss_pred             cccCcchhccC-------CCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC--CCCC-------CCCChHH
Q psy8478           3 RWMAPECLVDG-------LFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG--RLNR-------PANCSHL   66 (88)
Q Consensus         3 ~~~~pe~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~-------~~~~~~~   66 (88)
                      .|++||.+...       .++.++|+|++|++++++++.|..||......+.........  ..+.       +..+.+.
T Consensus       167 ~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  246 (269)
T cd05087         167 RWIAPELVDEVHGNLLVVDQTKESNVWSLGVTIWELFELGSQPYRHLSDEQVLTYTVREQQLKLPKPRLKLPLSDRWYEV  246 (269)
T ss_pred             cccCHhHhccccccccccCCCccchhHHHHHHHHHHHhCCCCCCCCCChHHHHHHHhhcccCCCCCCccCCCCChHHHHH
Confidence            58999987532       246789999999999998854888987666555444332221  1111       1223345


Q ss_pred             HHHHHhhCcccCCChhhhhhc
Q psy8478          67 IRSRNRLTENKAPSAVSKKRI   87 (88)
Q Consensus        67 ~~~~l~~~~~~rp~~~~~~~~   87 (88)
                      +..|+ .+|.+||++.++.+.
T Consensus       247 ~~~c~-~~P~~Rpt~~~l~~~  266 (269)
T cd05087         247 MQFCW-LQPEQRPSAEEVHLL  266 (269)
T ss_pred             HHHHh-cCcccCCCHHHHHHH
Confidence            66665 579999999998764

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=99.38  E-value=4.1e-12  Score=66.64  Aligned_cols=82  Identities=23%  Similarity=0.435  Sum_probs=63.8

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCC----CCCChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNR----PANCSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~l~~~~~~   77 (88)
                      ..|++||.......+.+.|+|++|++++++++ |..||......+....+... ....    +..+.+++.+|+..+|..
T Consensus       157 ~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~-g~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~i~~~l~~~p~~  234 (250)
T cd05123         157 PEYLAPEVLLGKGYGKAVDWWSLGVLLYEMLT-GKPPFYAEDRKEIYEKILKD-PLRFPEFLSPEARDLISGLLQKDPTK  234 (250)
T ss_pred             ccccChHHhCCCCCCchhhHHHHHHHHHHHHH-CCCCCCCCCHHHHHHHHhcC-CCCCCCCCCHHHHHHHHHHhcCCHhh
Confidence            35889998877677788999999999999999 99999877766666665543 2222    345677888999999999


Q ss_pred             CCCh---hhhh
Q psy8478          78 APSA---VSKK   85 (88)
Q Consensus        78 rp~~---~~~~   85 (88)
                      ||++   +++.
T Consensus       235 R~~~~~~~~l~  245 (250)
T cd05123         235 RLGSGGAEEIK  245 (250)
T ss_pred             CCCcccHHHHH
Confidence            9999   5554

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=99.38  E-value=3e-12  Score=68.17  Aligned_cols=83  Identities=20%  Similarity=0.333  Sum_probs=60.6

Q ss_pred             cccCcchhccC-CCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC--------------------------
Q psy8478           3 RWMAPECLVDG-LFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG--------------------------   55 (88)
Q Consensus         3 ~~~~pe~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--------------------------   55 (88)
                      .|++||.+... .++.+.|+|++|++++++++ |..||.+.........+.+..                          
T Consensus       163 ~~~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (282)
T cd07829         163 WYRAPEILLGSKHYSTAVDIWSVGCIFAEMIT-GKPLFPGDSEIDQLFKIFQILGTPTEESWPGVTKLPDYKPTFPKFPP  241 (282)
T ss_pred             CcCChHHhcCCcCCCccccHHHHHHHHHHHHh-CCCCCCCccHHHHHHHHHHHhCCCcHHHHHhhcccccccccccccCc
Confidence            48899988765 67788999999999999999 888887665444333221100                          


Q ss_pred             ------CCCCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          56 ------RLNRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        56 ------~~~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                            .+..+..+.+++.+|+..+|.+||+++++..
T Consensus       242 ~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~~l~  278 (282)
T cd07829         242 KDLEKVLPRLDPEGIDLLSKMLQYNPAKRISAKEALK  278 (282)
T ss_pred             cchHHhcccccHHHHHHHHHhhccCcccCCCHHHHhh
Confidence                  0011334667899999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.38  E-value=4.8e-13  Score=79.92  Aligned_cols=82  Identities=16%  Similarity=0.109  Sum_probs=56.5

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCC-C---CCCChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLN-R---PANCSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~---~~~~~~~~~~~l~~~~~~   77 (88)
                      +.|++||.+.+..++.++|+|++|++++++++ +..++....  .....+.....++ .   ......++..||..+|.+
T Consensus       179 ~~Y~APE~~~~~~~~~~sDVwSlGviL~ELl~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~P~~  255 (793)
T PLN00181        179 SWYTSPEEDNGSSSNCASDVYRLGVLLFELFC-PVSSREEKS--RTMSSLRHRVLPPQILLNWPKEASFCLWLLHPEPSC  255 (793)
T ss_pred             cceEChhhhccCCCCchhhhhhHHHHHHHHhh-CCCchhhHH--HHHHHHHHhhcChhhhhcCHHHHHHHHHhCCCChhh
Confidence            34999999988889999999999999999998 777654221  1222222111111 1   112345566788999999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||++.++++
T Consensus       256 Rps~~eil~  264 (793)
T PLN00181        256 RPSMSELLQ  264 (793)
T ss_pred             CcChHHHhh
Confidence            999999864

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=99.37  E-value=1.1e-12  Score=71.60  Aligned_cols=83  Identities=22%  Similarity=0.354  Sum_probs=58.2

Q ss_pred             CcccCcchhccC-CCCchhhHHHHHHHHHHHHhcCCCCCCCC----CHHHHHHHHHcCCC---CCCCCCChHHHHHHHhh
Q psy8478           2 TRWMAPECLVDG-LFSSQSDVWAFGVLLWEIMSLGQQPYPAR----TNVDVLHYVRGGGR---LNRPANCSHLIRSRNRL   73 (88)
Q Consensus         2 ~~~~~pe~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~---~~~~~~~~~~~~~~l~~   73 (88)
                      +.|++||.+.+. .++.++|+|++|++++++++ |..||...    ........+.....   ...+..+.+++..|+..
T Consensus       170 ~~y~aPE~~~~~~~~~~~~DiwslG~il~ellt-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~  248 (332)
T cd05614         170 IEYMAPEIIRGKGGHGKAVDWWSLGILIFELLT-GASPFTLEGERNTQSEVSRRILKCDPPFPSFIGPEAQDLLHKLLRK  248 (332)
T ss_pred             ccccCHHHhcCCCCCCCccccccchhhhhhhhc-CCCCCCCCCCCCCHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHcCC
Confidence            468999998764 46778999999999999999 99998632    22233333333211   12234467788889999


Q ss_pred             CcccCC-----Chhhhh
Q psy8478          74 TENKAP-----SAVSKK   85 (88)
Q Consensus        74 ~~~~rp-----~~~~~~   85 (88)
                      +|.+||     +++++.
T Consensus       249 dp~~R~~~~~~~~~~~l  265 (332)
T cd05614         249 DPKKRLGAGPQGASEIK  265 (332)
T ss_pred             CHHHcCCCCCCCHHHHH
Confidence            999999     555654

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=99.37  E-value=2.9e-12  Score=69.95  Aligned_cols=79  Identities=22%  Similarity=0.438  Sum_probs=57.7

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCC------CHH-HHHHHHHcCCCCCCC----CCChHHHHHH
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPAR------TNV-DVLHYVRGGGRLNRP----ANCSHLIRSR   70 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~-~~~~~i~~~~~~~~~----~~~~~~~~~~   70 (88)
                      +.|++||.+.+..++.++|+|++|++++++++ |..||...      ... .....+... ....|    ..+.+++.++
T Consensus       160 ~~y~aPE~~~~~~~~~~~DiwslGvil~ell~-g~~pf~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~li~~~  237 (327)
T cd05617         160 PNYIAPEILRGEEYGFSVDWWALGVLMFEMMA-GRSPFDIITDNPDMNTEDYLFQVILEK-PIRIPRFLSVKASHVLKGF  237 (327)
T ss_pred             cccCCHHHHCCCCCCchheeehhHHHHHHHHh-CCCCCCccCCCcccccHHHHHHHHHhC-CCCCCCCCCHHHHHHHHHH
Confidence            46899999988888889999999999999999 99999532      112 223333322 22233    3466788889


Q ss_pred             HhhCcccCCChh
Q psy8478          71 NRLTENKAPSAV   82 (88)
Q Consensus        71 l~~~~~~rp~~~   82 (88)
                      +..+|.+|+++.
T Consensus       238 L~~dP~~R~~~~  249 (327)
T cd05617         238 LNKDPKERLGCQ  249 (327)
T ss_pred             hccCHHHcCCCC
Confidence            999999999863

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=99.37  E-value=1e-12  Score=72.92  Aligned_cols=82  Identities=27%  Similarity=0.400  Sum_probs=59.2

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcC-CCCC------CCCCChHHHHHHHhhC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGG-GRLN------RPANCSHLIRSRNRLT   74 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~------~~~~~~~~~~~~l~~~   74 (88)
                      +.|+|||.+....++.++|+|++|++++++++ |..||.+.+..+....+... ....      .+..+.+++.+++ .+
T Consensus       212 ~~Y~aPE~~~~~~~~~~~DiwSlGvil~ellt-G~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~s~~~~~li~~l~-~~  289 (382)
T cd05625         212 PNYIAPEVLLRTGYTQLCDWWSVGVILYEMLV-GQPPFLAQTPLETQMKVINWQTSLHIPPQAKLSPEASDLIIKLC-RG  289 (382)
T ss_pred             cccCCHHHhcCCCCCCeeeEEechHHHHHHHh-CCCCCCCCCHHHHHHHHHccCCCcCCCCcccCCHHHHHHHHHHc-cC
Confidence            45999999988888999999999999999999 99999887766655555432 1111      1233455566654 57


Q ss_pred             cccCCC---hhhhh
Q psy8478          75 ENKAPS---AVSKK   85 (88)
Q Consensus        75 ~~~rp~---~~~~~   85 (88)
                      |.+|++   +.++.
T Consensus       290 p~~R~~~~~~~ei~  303 (382)
T cd05625         290 PEDRLGKNGADEIK  303 (382)
T ss_pred             HhHcCCCCCHHHHh
Confidence            888987   66553

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>PHA03211 serine/threonine kinase US3; Provisional

Probab=99.36  E-value=5.4e-12  Score=71.74  Aligned_cols=84  Identities=19%  Similarity=0.338  Sum_probs=56.9

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCC-CCCC-------CHHHHHHHHHcCCC-----------------
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQP-YPAR-------TNVDVLHYVRGGGR-----------------   56 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~~i~~~~~-----------------   56 (88)
                      +.|++||.+.+..++.++|+|++|+++++++. +..+ |...       ...++...+.....                 
T Consensus       326 ~~Y~APE~~~~~~~~~~sDvwSlGviL~El~~-g~~~lf~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~  404 (461)
T PHA03211        326 VDTNAPEVLAGDPYTPSVDIWSAGLVIFEAAV-HTASLFSASRGDERRPYDAQILRIIRQAQVHVDEFPQHAGSRLVSQY  404 (461)
T ss_pred             cCCcCHHHHcCCCCCchHHHHHHHHHHHHHHH-cCCCcccCCcccccCCcHHHHHHHHHhhccccccCCCCcchHHHHHH
Confidence            46899999988888899999999999999987 5433 3211       11222222221100                 


Q ss_pred             ---------C-----------CCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          57 ---------L-----------NRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        57 ---------~-----------~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                               .           .....+.+++..||..++.+||++.++++
T Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~DP~~RPsa~elL~  454 (461)
T PHA03211        405 RHRAARNRRPAYTRPAWTRYYKLDLDVEYLVCRALTFDGARRPSAAELLR  454 (461)
T ss_pred             HhhhhcccCCccCCcchhhhccccchHHHHHHHHcccChhhCcCHHHHhh
Confidence                     0           01124556888999999999999999875

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=99.36  E-value=5.3e-12  Score=67.08  Aligned_cols=83  Identities=18%  Similarity=0.446  Sum_probs=59.7

Q ss_pred             cccCcchhccCC--CCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcC-CCC--------CCCCCChHHHHHHH
Q psy8478           3 RWMAPECLVDGL--FSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGG-GRL--------NRPANCSHLIRSRN   71 (88)
Q Consensus         3 ~~~~pe~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~--------~~~~~~~~~~~~~l   71 (88)
                      .|++||......  ++.+.|+|++|++++++++ |..|+......+....+... ...        ..+..+.+++.+|+
T Consensus       175 ~y~~PE~~~~~~~~~~~~~Dv~slG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l  253 (272)
T cd06629         175 FWMAPEVIHSYSQGYSAKVDIWSLGCVVLEMFA-GRRPWSDEEAIAAMFKLGNKRSAPPIPPDVSMNLSPVALDFLNACF  253 (272)
T ss_pred             cccCHHHhccccCCCCccchhHHHHHHHHHHHh-CCCCCcCcchHHHHHHhhccccCCcCCccccccCCHHHHHHHHHHh
Confidence            588999876543  6778999999999999999 99998655544333332211 111        12334667788899


Q ss_pred             hhCcccCCChhhhhh
Q psy8478          72 RLTENKAPSAVSKKR   86 (88)
Q Consensus        72 ~~~~~~rp~~~~~~~   86 (88)
                      ..+|.+||+++++.+
T Consensus       254 ~~~p~~Rps~~~il~  268 (272)
T cd06629         254 TINPDNRPTARELLQ  268 (272)
T ss_pred             cCChhhCCCHHHHhh
Confidence            999999999999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=99.36  E-value=2.3e-12  Score=68.00  Aligned_cols=83  Identities=20%  Similarity=0.310  Sum_probs=62.2

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCC---HHHHHHHHHcCC---CCCCCCCChHHHHHHHhhCcc
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPART---NVDVLHYVRGGG---RLNRPANCSHLIRSRNRLTEN   76 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~---~~~~~~~~~~~~~~~l~~~~~   76 (88)
                      .|++||.+....++.++|+|++|++++++++ |..|+....   ............   +...+..+.+++.+|+..+|.
T Consensus       164 ~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~  242 (258)
T cd05578         164 GYMAPEVLCRQGYSVAVDWWSLGVTAYECLR-GKRPYRGHSRTIRDQIRAKQETADVLYPATWSTEAIDAINKLLERDPQ  242 (258)
T ss_pred             hhcCHHHHcccCCCCcccchhhHHHHHHHHh-CCCCCCCCCccHHHHHHHHhccccccCcccCcHHHHHHHHHHccCChh
Confidence            5789999887778889999999999999999 999987665   333333333211   122345677888889999999


Q ss_pred             cCCCh--hhhhh
Q psy8478          77 KAPSA--VSKKR   86 (88)
Q Consensus        77 ~rp~~--~~~~~   86 (88)
                      +||++  .++.+
T Consensus       243 ~R~~~~~~~l~~  254 (258)
T cd05578         243 KRLGDNLKDLKN  254 (258)
T ss_pred             HcCCccHHHHhc
Confidence            99999  77764

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>KOG0193|consensus

Probab=99.36  E-value=3.3e-13  Score=77.39  Aligned_cols=84  Identities=27%  Similarity=0.492  Sum_probs=64.3

Q ss_pred             CcccCcchhcc---CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCC--------CCCCChHHHHHH
Q psy8478           2 TRWMAPECLVD---GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLN--------RPANCSHLIRSR   70 (88)
Q Consensus         2 ~~~~~pe~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--------~~~~~~~~~~~~   70 (88)
                      +.|||||++..   ..|+..+|+|+||++.||+++ |..||......+++.++-.|+-.+        .|..+.+++..|
T Consensus       554 ilwmAPEvIRmqd~nPfS~qSDVYaFGiV~YELlt-g~lPysi~~~dqIifmVGrG~l~pd~s~~~s~~pk~mk~Ll~~C  632 (678)
T KOG0193|consen  554 LLWMAPEVIRMQDDNPFSFQSDVYAFGIVWYELLT-GELPYSIQNRDQIIFMVGRGYLMPDLSKIRSNCPKAMKRLLSDC  632 (678)
T ss_pred             hhhhcHHHHhhcccCCCCcccchhhhhHHHHHHHh-CcCCcCCCChhheEEEecccccCccchhhhccCHHHHHHHHHHH
Confidence            57999999873   579999999999999999999 999999777777777776664221        122344566667


Q ss_pred             HhhCcccCCChhhhhh
Q psy8478          71 NRLTENKAPSAVSKKR   86 (88)
Q Consensus        71 l~~~~~~rp~~~~~~~   86 (88)
                      +..+++.||...++..
T Consensus       633 ~~~~~~eRP~F~~il~  648 (678)
T KOG0193|consen  633 WKFDREERPLFPQLLS  648 (678)
T ss_pred             HhcCcccCccHHHHHH
Confidence            7777889999887753

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.36  E-value=8.3e-13  Score=73.18  Aligned_cols=83  Identities=19%  Similarity=0.380  Sum_probs=60.1

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcC-CCCCCC------CCChHHHHHHHhhC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGG-GRLNRP------ANCSHLIRSRNRLT   74 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~------~~~~~~~~~~l~~~   74 (88)
                      +.|++||.+....++.++|+|++|++++++++ |..||.+....+....+... .....|      ..+.+++.+++. +
T Consensus       212 ~~y~aPE~~~~~~~~~~~DiwSlGvil~ellt-G~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~s~~~~dli~~lL~-~  289 (377)
T cd05629         212 PDYIAPEIFLQQGYGQECDWWSLGAIMFECLI-GWPPFCSENSHETYRKIINWRETLYFPDDIHLSVEAEDLIRRLIT-N  289 (377)
T ss_pred             ccccCHHHHccCCCCCceeeEecchhhhhhhc-CCCCCCCCCHHHHHHHHHccCCccCCCCCCCCCHHHHHHHHHHhc-C
Confidence            45999999988888999999999999999999 99999877766666555432 122222      234567777776 5


Q ss_pred             cccC---CChhhhhh
Q psy8478          75 ENKA---PSAVSKKR   86 (88)
Q Consensus        75 ~~~r---p~~~~~~~   86 (88)
                      +.+|   +++.++.+
T Consensus       290 ~~~r~~r~~~~~~l~  304 (377)
T cd05629         290 AENRLGRGGAHEIKS  304 (377)
T ss_pred             HhhcCCCCCHHHHhc
Confidence            6554   58877653

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>KOG4645|consensus

Probab=99.36  E-value=2.2e-13  Score=83.35  Aligned_cols=86  Identities=17%  Similarity=0.326  Sum_probs=65.7

Q ss_pred             CCcccCcchhccC---CCCchhhHHHHHHHHHHHHhcCCCCCCCCC-HHHHHHHHHcCCCCCCCCCChH----HHHHHHh
Q psy8478           1 MTRWMAPECLVDG---LFSSQSDVWAFGVLLWEIMSLGQQPYPART-NVDVLHYVRGGGRLNRPANCSH----LIRSRNR   72 (88)
Q Consensus         1 ~~~~~~pe~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~----~~~~~l~   72 (88)
                      ++-|||||++.+.   +....+|+|++||+..++++ |+.|+...+ .-.+-.++..|-.++.|..++.    ++..|++
T Consensus      1401 T~~YMAPEvit~t~~kG~~~A~DiWslGCVVlEM~t-GkrPW~~~dne~aIMy~V~~gh~Pq~P~~ls~~g~dFle~Cl~ 1479 (1509)
T KOG4645|consen 1401 TPMYMAPEVITGTKGKGHGGAADIWSLGCVVLEMAT-GKRPWAELDNEWAIMYHVAAGHKPQIPERLSSEGRDFLEHCLE 1479 (1509)
T ss_pred             CchhcCchhhcccccCCCCcchhhhcccceEEEeec-CCCchhhccchhHHHhHHhccCCCCCchhhhHhHHHHHHHHHh
Confidence            4679999999864   45678999999999999999 999987544 4556667777777788877654    5666677


Q ss_pred             hCcccCCChhhhhhc
Q psy8478          73 LTENKAPSAVSKKRI   87 (88)
Q Consensus        73 ~~~~~rp~~~~~~~~   87 (88)
                      .+|.+|.++.|++++
T Consensus      1480 ~dP~~Rw~~~qlle~ 1494 (1509)
T KOG4645|consen 1480 QDPKMRWTASQLLEH 1494 (1509)
T ss_pred             cCchhhhHHHHHHHh
Confidence            777777777777654

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=99.36  E-value=6.7e-12  Score=66.98  Aligned_cols=83  Identities=20%  Similarity=0.308  Sum_probs=60.1

Q ss_pred             cccCcchhccC-CCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC--------------------------
Q psy8478           3 RWMAPECLVDG-LFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG--------------------------   55 (88)
Q Consensus         3 ~~~~pe~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--------------------------   55 (88)
                      .|++||.+... .++.+.|+|++|++++++++ |..||.+....+....+....                          
T Consensus       165 ~y~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (284)
T cd07836         165 WYRAPDVLLGSRTYSTSIDIWSVGCIMAEMIT-GRPLFPGTNNEDQLLKIFRIMGTPTESTWPGISQLPEYKPTFPRYPP  243 (284)
T ss_pred             cccChHHhcCCCCCCcHHHHHHHHHHHHHHHh-CCCCCCCCCcHHHHHHHHHHhCCCChhhHHHHhcCchhcccccCCCh
Confidence            58899987654 46788999999999999999 999987665544333321110                          


Q ss_pred             ------CCCCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          56 ------RLNRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        56 ------~~~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                            .+..+..+.+++..|+..+|.+||++.++.+
T Consensus       244 ~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~l~  280 (284)
T cd07836         244 QDLQQLFPHADPLGIDLLHRLLQLNPELRISAHDALQ  280 (284)
T ss_pred             HHHHHHhhhcCcHHHHHHHHHhcCCcccCCCHHHHhc
Confidence                  0012334557888999999999999999875

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=99.36  E-value=8.7e-12  Score=68.13  Aligned_cols=83  Identities=22%  Similarity=0.359  Sum_probs=60.9

Q ss_pred             cccCcchhccC-CCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC---C----------------------
Q psy8478           3 RWMAPECLVDG-LFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG---R----------------------   56 (88)
Q Consensus         3 ~~~~pe~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~----------------------   56 (88)
                      .|++||.+.+. .++.+.|+|++|++++++++ |..||.+....+....+....   .                      
T Consensus       198 ~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~t-g~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (335)
T PTZ00024        198 WYRAPELLMGAEKYHFAVDMWSVGCIFAELLT-GKPLFPGENEIDQLGRIFELLGTPNEDNWPQAKKLPLYTEFTPRKPK  276 (335)
T ss_pred             CCCCChhcccCCCCCcHHHHHHHHHHHHHHHh-CCCCCCCCCHHHHHHHHHHHhCCCchhhCcchhhcccccccCcCCcc
Confidence            58999988654 46788999999999999999 999998776655444332100   0                      


Q ss_pred             ------CCCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          57 ------LNRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        57 ------~~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                            ...+..+.+++..|+..+|.+||++++++.
T Consensus       277 ~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~~~l~  312 (335)
T PTZ00024        277 DLKTIFPNASDDAIDLLQSLLKLNPLERISAKEALK  312 (335)
T ss_pred             cHHHhCcCCChHHHHHHHHHcCCCchhccCHHHHhc
Confidence                  011233557888999999999999999865

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=99.36  E-value=1.1e-11  Score=68.04  Aligned_cols=84  Identities=35%  Similarity=0.669  Sum_probs=61.2

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCH-HHHHHHHHcCCCCCCCCC----ChHHHHHHHhhCccc
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTN-VDVLHYVRGGGRLNRPAN----CSHLIRSRNRLTENK   77 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~----~~~~~~~~l~~~~~~   77 (88)
                      .|++||.+....++.++|+|++|++++++++.|..|+..... ......+..+.....+..    ..+.+..|+..+|.+
T Consensus       246 ~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cl~~~p~~  325 (343)
T cd05103         246 KWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQ  325 (343)
T ss_pred             ceECcHHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCccccHHHHHHHhccCCCCCCCCCCHHHHHHHHHHccCChhh
Confidence            589999988778888999999999999988658888865433 233344444444333333    345666777788999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||++.++.+
T Consensus       326 Rps~~eil~  334 (343)
T cd05103         326 RPTFSELVE  334 (343)
T ss_pred             CcCHHHHHH
Confidence            999999865

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=99.36  E-value=5.6e-12  Score=67.71  Aligned_cols=84  Identities=20%  Similarity=0.322  Sum_probs=60.2

Q ss_pred             CcccCcchhccC-CCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcC--C-----------------------
Q psy8478           2 TRWMAPECLVDG-LFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGG--G-----------------------   55 (88)
Q Consensus         2 ~~~~~pe~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~-----------------------   55 (88)
                      +.|++||.+.+. .++.++|+|++|++++++++ |..||......+....+...  .                       
T Consensus       167 ~~y~~PE~~~~~~~~~~~~Dv~slG~i~~~l~t-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (294)
T PLN00009        167 LWYRAPEILLGSRHYSTPVDIWSVGCIFAEMVN-QKPLFPGDSEIDELFKIFRILGTPNEETWPGVTSLPDYKSAFPKWP  245 (294)
T ss_pred             ecccCHHHHhCCCCCCcHHHHHHHHHHHHHHHh-CCCCCCCCCHHHHHHHHHHHhCCCChhhccccccchhhhhhcccCC
Confidence            358899987654 46788999999999999999 99999766544443332110  0                       


Q ss_pred             -------CCCCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          56 -------RLNRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        56 -------~~~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                             .+..+..+.+++..|+..+|.+||++.++++
T Consensus       246 ~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~~~l~  283 (294)
T PLN00009        246 PKDLATVVPTLEPAGVDLLSKMLRLDPSKRITARAALE  283 (294)
T ss_pred             CCCHHHhCcCCChHHHHHHHHHccCChhhCcCHHHHhc
Confidence                   0112334557888999999999999999865

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=99.36  E-value=8.2e-12  Score=67.59  Aligned_cols=83  Identities=20%  Similarity=0.389  Sum_probs=57.2

Q ss_pred             cccCcchhccC--CCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHH-HHHHHcCCCC----------------------
Q psy8478           3 RWMAPECLVDG--LFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDV-LHYVRGGGRL----------------------   57 (88)
Q Consensus         3 ~~~~pe~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~----------------------   57 (88)
                      .|++||.+...  .++.++|+|++|++++++++ |..||........ ...+......                      
T Consensus       173 ~y~aPE~~~~~~~~~~~~~Diws~G~il~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (314)
T cd08216         173 PWLSPEVLQQNLQGYNEKSDIYSVGITACELAN-GHVPFKDMPATQMLLEKVRGTVPCLLDKSTYPLYEDSMSQSRSSNE  251 (314)
T ss_pred             cccCHHHhcCCCCCCCcchhHHHHHHHHHHHHh-CCCCCCCCCHHHHHHHHHhccCccccccCchhhhcCCcCccccccc
Confidence            58899988653  47788999999999999999 9999976543322 2222111000                      


Q ss_pred             ----------CC----CCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          58 ----------NR----PANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        58 ----------~~----~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                                ..    ...+.+++..|+..+|.+||+++++++
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~  294 (314)
T cd08216         252 HPNNRDSVDHPYTRTFSEHFHQFVELCLQRDPESRPSASQLLN  294 (314)
T ss_pred             ccchhhhhhcchhhHHHHHHHHHHHHHhhcCCCcCcCHHHHhc
Confidence                      00    012335788899999999999999875

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=99.36  E-value=3.8e-12  Score=67.72  Aligned_cols=82  Identities=20%  Similarity=0.376  Sum_probs=59.9

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHH-----HHHHHHcCCCCC----CCCCChHHHHHHHh
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVD-----VLHYVRGGGRLN----RPANCSHLIRSRNR   72 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~----~~~~~~~~~~~~l~   72 (88)
                      +.|++||.+....++.++|+|++|++++++++ |..||.......     .....  .....    .+..+.+++.+++.
T Consensus       170 ~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~-g~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~li~~~l~  246 (267)
T PHA03390        170 LDYFSPEKIKGHNYDVSFDWWAVGVLTYELLT-GKHPFKEDEDEELDLESLLKRQ--QKKLPFIKNVSKNANDFVQSMLK  246 (267)
T ss_pred             CcccChhhhcCCCCCchhhHHHHHHHHHHHHH-CCCCCCCCCcchhhHHHHHHhh--cccCCcccccCHHHHHHHHHHhc
Confidence            46899999987788889999999999999999 999987443221     11111  11111    34456778899999


Q ss_pred             hCcccCCC-hhhhhh
Q psy8478          73 LTENKAPS-AVSKKR   86 (88)
Q Consensus        73 ~~~~~rp~-~~~~~~   86 (88)
                      .+|.+|++ .+++++
T Consensus       247 ~~p~~R~~~~~~~l~  261 (267)
T PHA03390        247 YNINYRLTNYNEIIK  261 (267)
T ss_pred             cChhhCCchHHHHhc
Confidence            99999996 588764

>KOG0585|consensus

Probab=99.36  E-value=2.2e-12  Score=72.64  Aligned_cols=83  Identities=20%  Similarity=0.352  Sum_probs=67.6

Q ss_pred             CCcccCcchhccC---CC-CchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCC------CCCChHHHHHH
Q psy8478           1 MTRWMAPECLVDG---LF-SSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNR------PANCSHLIRSR   70 (88)
Q Consensus         1 ~~~~~~pe~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~   70 (88)
                      ++.|+|||.+...   .+ +.+.|+|++|+.+|.++. |..||.+....++..+|.... ...      .+...++|..+
T Consensus       278 TPAF~APE~c~~~~~~~~~g~a~DiWalGVTLYCllf-G~~PF~~~~~~~l~~KIvn~p-L~fP~~pe~~e~~kDli~~l  355 (576)
T KOG0585|consen  278 TPAFFAPELCSGGNSFSYSGFALDIWALGVTLYCLLF-GQLPFFDDFELELFDKIVNDP-LEFPENPEINEDLKDLIKRL  355 (576)
T ss_pred             CccccchHhhcCCCCccccchhhhhhhhhhhHHHhhh-ccCCcccchHHHHHHHHhcCc-ccCCCcccccHHHHHHHHHH
Confidence            4789999999862   23 458999999999999999 999999888888888987552 222      34567889999


Q ss_pred             HhhCcccCCChhhhh
Q psy8478          71 NRLTENKAPSAVSKK   85 (88)
Q Consensus        71 l~~~~~~rp~~~~~~   85 (88)
                      |.++|++|.++.++.
T Consensus       356 L~KdP~~Ri~l~~ik  370 (576)
T KOG0585|consen  356 LEKDPEQRITLPDIK  370 (576)
T ss_pred             hhcChhheeehhhhe
Confidence            999999999988874

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=99.36  E-value=2e-12  Score=68.50  Aligned_cols=83  Identities=18%  Similarity=0.368  Sum_probs=59.4

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHH---HHHHHHH-cCCCCCCC----CCChHHHHHHHhhC
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNV---DVLHYVR-GGGRLNRP----ANCSHLIRSRNRLT   74 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~-~~~~~~~~----~~~~~~~~~~l~~~   74 (88)
                      .|++||......++.+.|+|++|++++++++ |..||......   .....+. .......+    ..+.+++.+++..+
T Consensus       173 ~~~~PE~~~~~~~~~~~Dv~slG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~  251 (268)
T cd06630         173 AFMAPEVLRGEQYGRSCDVWSVGCVIIEMAT-AKPPWNAEKHSNHLALIFKIASATTAPSIPEHLSPGLRDVTLRCLELQ  251 (268)
T ss_pred             ceeCHhHhccCCCCcccchHHHHHHHHHHHh-CCCCCCCCCCcchHHHHHHHhccCCCCCCchhhCHHHHHHHHHHcCCC
Confidence            5889999877778889999999999999999 99888644322   2222221 12222223    34556777888899


Q ss_pred             cccCCChhhhhh
Q psy8478          75 ENKAPSAVSKKR   86 (88)
Q Consensus        75 ~~~rp~~~~~~~   86 (88)
                      |.+||++.++++
T Consensus       252 p~~R~~~~~ll~  263 (268)
T cd06630         252 PEDRPPSRELLK  263 (268)
T ss_pred             cccCcCHHHHhc
Confidence            999999999864

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=99.35  E-value=4.2e-12  Score=67.74  Aligned_cols=84  Identities=19%  Similarity=0.283  Sum_probs=59.7

Q ss_pred             CcccCcchhccC-CCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC-----------------------
Q psy8478           2 TRWMAPECLVDG-LFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRL-----------------------   57 (88)
Q Consensus         2 ~~~~~pe~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----------------------   57 (88)
                      ..|++||.+.+. .++.+.|+|++|++++++++ |..||...........+......                       
T Consensus       165 ~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~t-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (287)
T cd07840         165 LWYRPPELLLGATRYGPEVDMWSVGCILAELFL-GKPIFQGSTELEQLEKIFELCGSPTDENWPGVSKLPWFENLKPKKP  243 (287)
T ss_pred             cccCCceeeEccccCChHHHHHHHHHHHHHHHh-CCCCCCCCChHHHHHHHHHHhCCCchhhccccccchhhhhcccccc
Confidence            358999977643 56789999999999999999 99998766654443333211000                       


Q ss_pred             ----------C-CCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          58 ----------N-RPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        58 ----------~-~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                                . .+..+.+++.+|+..+|.+||+++++.+
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~~l~  283 (287)
T cd07840         244 YKRRLREFFKHLIDPSALDLLDKLLTLDPKKRISADQALQ  283 (287)
T ss_pred             chhHHHHHhcccCCHHHHHHHHHHcCCChhhCcCHHHHhh
Confidence                      0 0233456788899999999999999865

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=99.35  E-value=5.1e-13  Score=73.97  Aligned_cols=83  Identities=25%  Similarity=0.368  Sum_probs=60.6

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC---CCC----CCCCChHHHHHHHhhC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG---RLN----RPANCSHLIRSRNRLT   74 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~----~~~~~~~~~~~~l~~~   74 (88)
                      +.|++||.+....++.++|+|++|++++++++ |..||.+....+....+....   ..+    .+..+.+++..++ .+
T Consensus       208 ~~y~aPE~~~~~~~~~~~DiwSlGvilyell~-G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~l~-~~  285 (376)
T cd05598         208 PNYIAPEVLLRTGYTQLCDWWSVGVILYEMLV-GQPPFLADTPAETQLKVINWETTLHIPSQAKLSREASDLILRLC-CG  285 (376)
T ss_pred             ccccCHHHHcCCCCCcceeeeeccceeeehhh-CCCCCCCCCHHHHHHHHhccCccccCCCCCCCCHHHHHHHHHHh-cC
Confidence            46999999988888899999999999999999 999998877666555543221   111    1223455666654 58


Q ss_pred             cccCC---Chhhhhh
Q psy8478          75 ENKAP---SAVSKKR   86 (88)
Q Consensus        75 ~~~rp---~~~~~~~   86 (88)
                      |.+|+   ++.++.+
T Consensus       286 p~~R~~~~t~~ell~  300 (376)
T cd05598         286 AEDRLGKNGADEIKA  300 (376)
T ss_pred             HhhcCCCCCHHHHhC
Confidence            99999   7777653

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=99.35  E-value=1.9e-12  Score=71.81  Aligned_cols=84  Identities=24%  Similarity=0.426  Sum_probs=57.0

Q ss_pred             CcccCcchhccC----CCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC-CCCCC--CC----ChHHHHHH
Q psy8478           2 TRWMAPECLVDG----LFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG-RLNRP--AN----CSHLIRSR   70 (88)
Q Consensus         2 ~~~~~pe~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~--~~----~~~~~~~~   70 (88)
                      +.|++||.+...    .++.++|+|++|++++++++ |..||.+.+.......+.... ....|  ..    +.+++..+
T Consensus       207 ~~y~aPE~l~~~~~~~~~~~~~DiwSlGvilyell~-G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~  285 (371)
T cd05622         207 PDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLV-GDTPFYADSLVGTYSKIMNHKNSLTFPDDNDISKEAKNLICAF  285 (371)
T ss_pred             ccccCHHHHhccCCCccCCCccceeehhHHHHHHHh-CCCCCCCCCHHHHHHHHHcCCCcccCCCcCCCCHHHHHHHHHH
Confidence            569999998753    26789999999999999999 999999888777777765432 12222  23    34455555


Q ss_pred             HhhCccc--CCChhhhhh
Q psy8478          71 NRLTENK--APSAVSKKR   86 (88)
Q Consensus        71 l~~~~~~--rp~~~~~~~   86 (88)
                      +...+.+  |++++++.+
T Consensus       286 L~~~~~r~~r~~~~ei~~  303 (371)
T cd05622         286 LTDREVRLGRNGVEEIKR  303 (371)
T ss_pred             cCChhhhcCCCCHHHHhc
Confidence            5522222  667777654

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=99.35  E-value=4e-12  Score=69.58  Aligned_cols=84  Identities=18%  Similarity=0.328  Sum_probs=58.6

Q ss_pred             CcccCcchhcc-CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHc--C------------------------
Q psy8478           2 TRWMAPECLVD-GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRG--G------------------------   54 (88)
Q Consensus         2 ~~~~~pe~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~------------------------   54 (88)
                      ..|++||.+.. ..++.++|+|++|+++++++. |..||.+.+.......+..  +                        
T Consensus       172 ~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (337)
T cd07858         172 RWYRAPELLLNCSEYTTAIDVWSVGCIFAELLG-RKPLFPGKDYVHQLKLITELLGSPSEEDLGFIRNEKARRYIRSLPY  250 (337)
T ss_pred             cCccChHHHhcCCCCCCcccHHHHHHHHHHHHc-CCCCCCCCChHHHHHHHHHHhCCCChHHhhhcCchhhhHHHHhcCc
Confidence            35899998764 457789999999999999998 9999876543322221110  0                        


Q ss_pred             -C-------CCCCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          55 -G-------RLNRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        55 -~-------~~~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                       .       ....+..+.+++..|+..+|.+||+++++.+
T Consensus       251 ~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rps~~ell~  290 (337)
T cd07858         251 TPRQSFARLFPHANPLAIDLLEKMLVFDPSKRITVEEALA  290 (337)
T ss_pred             ccccCHHHHcccCCHHHHHHHHHHhcCChhhccCHHHHHc
Confidence             0       0112334557888999999999999999864

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>KOG0986|consensus

Probab=99.35  E-value=1.3e-12  Score=73.26  Aligned_cols=81  Identities=20%  Similarity=0.318  Sum_probs=60.8

Q ss_pred             CCcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCC----CHHHHHHHHHcCC---CCCCCCCChHHHHHHHhh
Q psy8478           1 MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPAR----TNVDVLHYVRGGG---RLNRPANCSHLIRSRNRL   73 (88)
Q Consensus         1 ~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~---~~~~~~~~~~~~~~~l~~   73 (88)
                      ++.|||||++....|+..+|+|++||++|+++. |..||...    ..+++-.++.+..   .....+.+.++.+.+|.+
T Consensus       349 T~GYMAPEvl~ne~Y~~s~Dwf~lGCllYemi~-G~sPFr~~KeKvk~eEvdrr~~~~~~ey~~kFS~eakslc~~LL~K  427 (591)
T KOG0986|consen  349 TVGYMAPEVLQNEVYDFSPDWFSLGCLLYEMIA-GHSPFRQRKEKVKREEVDRRTLEDPEEYSDKFSEEAKSLCEGLLTK  427 (591)
T ss_pred             cccccCHHHHcCCcccCCccHHHHHhHHHHHHc-ccCchhhhhhhhhHHHHHHHHhcchhhcccccCHHHHHHHHHHHcc
Confidence            467999999999899999999999999999999 99999643    2345555555432   222344556677788888


Q ss_pred             CcccCCChh
Q psy8478          74 TENKAPSAV   82 (88)
Q Consensus        74 ~~~~rp~~~   82 (88)
                      ++.+|...+
T Consensus       428 dp~~RLGcr  436 (591)
T KOG0986|consen  428 DPEKRLGCR  436 (591)
T ss_pred             CHHHhccCC
Confidence            888887543

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=99.35  E-value=6.5e-12  Score=68.60  Aligned_cols=84  Identities=19%  Similarity=0.293  Sum_probs=59.1

Q ss_pred             CcccCcchhcc-CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcC--------------------------
Q psy8478           2 TRWMAPECLVD-GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGG--------------------------   54 (88)
Q Consensus         2 ~~~~~pe~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--------------------------   54 (88)
                      ..|++||.+.. ..++.++|+|++|+++++++. |..||...+.......+...                          
T Consensus       173 ~~y~aPE~~~~~~~~~~~~Di~slGv~l~~l~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (332)
T cd07857         173 RWYRAPEIMLSFQSYTKAIDVWSVGCILAELLG-RKPVFKGKDYVDQLNQILQVLGTPDEETLSRIGSPKAQNYIRSLPN  251 (332)
T ss_pred             ccccCcHHHhCCCCCCcHHHHHHHHHHHHHHHh-CCcCCCCCCHHHHHHHHHHHhCCCCHHHHHhhhhhhHHHHHHhccc
Confidence            35899998765 357889999999999999998 98888765543333221110                          


Q ss_pred             -CC-------CCCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          55 -GR-------LNRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        55 -~~-------~~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                       ..       ...+..+.+++.+|+..+|.+||++.++++
T Consensus       252 ~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~~ll~  291 (332)
T cd07857         252 IPKKPFESIFPNANPLALDLLEKLLAFDPTKRISVEEALE  291 (332)
T ss_pred             cCCcchHhhCCCCCHHHHHHHHHHccCCcccCCCHHHHhc
Confidence             00       011234567888899999999999998864

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=99.35  E-value=3.4e-12  Score=69.72  Aligned_cols=83  Identities=17%  Similarity=0.362  Sum_probs=59.5

Q ss_pred             cccCcchhcc-CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHc--C---------------------C--C
Q psy8478           3 RWMAPECLVD-GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRG--G---------------------G--R   56 (88)
Q Consensus         3 ~~~~pe~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~---------------------~--~   56 (88)
                      .|++||.+.. ..++.++|+|++|+++++++. |..||.+.........+..  +                     .  .
T Consensus       176 ~y~~PE~~~~~~~~~~~~Di~slG~~l~el~~-g~~pf~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  254 (334)
T cd07855         176 WYRAPELLLSLPEYTTAIDMWSVGCIFAEMLG-RRQLFPGKNYVHQLKLILSVLGSPSEEVLNRIGSDRVRKYIQNLPRK  254 (334)
T ss_pred             cccChHHhcCCcccccccchHHHHHHHHHHHc-CCCccCCCChHHHHHHHHHHhCCChhHhhhhhchhhHHHHHhhcccC
Confidence            5789998765 357788999999999999998 9999976654333222111  0                     0  0


Q ss_pred             ---------CCCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          57 ---------LNRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        57 ---------~~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                               ...+..+.+++.+|++.+|.+||++.++++
T Consensus       255 ~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~l~  293 (334)
T cd07855         255 QPVPWSKIFPKASPEALDLLSQMLQFDPEERITVEQALQ  293 (334)
T ss_pred             CCCCHHHHcccCCHHHHHHHHHHccCChhhCcCHHHHHh
Confidence                     112345667888999999999999998764

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=99.34  E-value=4.6e-13  Score=73.78  Aligned_cols=78  Identities=19%  Similarity=0.360  Sum_probs=57.5

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC-CCCC------CCCChHHHHHHHhhC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG-RLNR------PANCSHLIRSRNRLT   74 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~------~~~~~~~~~~~l~~~   74 (88)
                      +.|+|||.+.+..++.++|+|++|++++++++ |..||.+.........+.... ....      ...+.+++.+++ .+
T Consensus       200 ~~Y~APE~~~~~~~~~~~DiwSlGvilyel~t-G~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~s~~~~~li~~l~-~~  277 (360)
T cd05627         200 PDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLI-GYPPFCSETPQETYRKVMNWKETLVFPPEVPISEKAKDLILRFC-TD  277 (360)
T ss_pred             ccccCHHHHcCCCCCCcceeccccceeeeccc-CCCCCCCCCHHHHHHHHHcCCCceecCCCCCCCHHHHHHHHHhc-cC
Confidence            46999999988888999999999999999999 999998887777766665421 1111      223445555544 47


Q ss_pred             cccCCCh
Q psy8478          75 ENKAPSA   81 (88)
Q Consensus        75 ~~~rp~~   81 (88)
                      +.+|+++
T Consensus       278 p~~R~~~  284 (360)
T cd05627         278 SENRIGS  284 (360)
T ss_pred             hhhcCCC
Confidence            8888864

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=99.33  E-value=6.9e-12  Score=68.59  Aligned_cols=83  Identities=20%  Similarity=0.356  Sum_probs=58.5

Q ss_pred             cccCcchhcc-CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC--------------------------
Q psy8478           3 RWMAPECLVD-GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG--------------------------   55 (88)
Q Consensus         3 ~~~~pe~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--------------------------   55 (88)
                      .|++||.+.. ..++.++|+|++|++++++++ |..||.+....+....+....                          
T Consensus       177 ~y~aPE~~~~~~~~~~~sDi~slG~~l~el~t-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (337)
T cd07852         177 WYRAPEILLGSTRYTKGVDMWSVGCILGEMLL-GKPLFPGTSTLNQLEKIIEVIGPPSAEDIESIKSPFAATMLDSLPSR  255 (337)
T ss_pred             cccCceeeeccccccccchHHHHHHHHHHHHh-CCCCCCCCChHHHHHHHHHHhCCCCHHHHHHHHhhhHHHhhhhcccc
Confidence            5889998754 356778999999999999999 999987655443322221110                          


Q ss_pred             -C-------CCCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          56 -R-------LNRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        56 -~-------~~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                       .       ...+..+.+++..|+..+|.+||++.++.+
T Consensus       256 ~~~~~~~~~~~~~~~l~~li~~~l~~~P~~Rps~~~il~  294 (337)
T cd07852         256 PRKPLDELLPKASDDALDLLKKLLVFNPNKRLTAEEALE  294 (337)
T ss_pred             cccchhhhccCCCHHHHHHHHHhccCCcccccCHHHHhh
Confidence             0       012334567888899999999999999865

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.33  E-value=2.7e-11  Score=64.24  Aligned_cols=83  Identities=17%  Similarity=0.382  Sum_probs=58.9

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHH-cCCCCCCCCCC----hHHHHHHHhhCcc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVR-GGGRLNRPANC----SHLIRSRNRLTEN   76 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~----~~~~~~~l~~~~~   76 (88)
                      ..|++||.+....++.++|+|++|++++++++ |..||...........+. ....+..|...    .+++.+++. .+.
T Consensus       173 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~l~-~~~  250 (264)
T cd06653         173 PYWMSPEVISGEGYGRKADVWSVACTVVEMLT-EKPPWAEYEAMAAIFKIATQPTKPMLPDGVSDACRDFLKQIFV-EEK  250 (264)
T ss_pred             ccccCHhhhcCCCCCccccHHHHHHHHHHHHh-CCCCCCccCHHHHHHHHHcCCCCCCCCcccCHHHHHHHHHHhc-Ccc
Confidence            35889999887777888999999999999999 999997665544444433 23333345444    445555555 369


Q ss_pred             cCCChhhhhh
Q psy8478          77 KAPSAVSKKR   86 (88)
Q Consensus        77 ~rp~~~~~~~   86 (88)
                      +||++.+++.
T Consensus       251 ~r~~~~~~~~  260 (264)
T cd06653         251 RRPTAEFLLR  260 (264)
T ss_pred             cCccHHHHhc
Confidence            9999988764

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=99.33  E-value=1e-11  Score=66.34  Aligned_cols=83  Identities=19%  Similarity=0.364  Sum_probs=60.2

Q ss_pred             CcccCcchhccC-CCCchhhHHHHHHHHHHHHhcCCCCCCCC---CHHHHHHHHHcCCCCC----CCCCChHHHHHHHhh
Q psy8478           2 TRWMAPECLVDG-LFSSQSDVWAFGVLLWEIMSLGQQPYPAR---TNVDVLHYVRGGGRLN----RPANCSHLIRSRNRL   73 (88)
Q Consensus         2 ~~~~~pe~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~----~~~~~~~~~~~~l~~   73 (88)
                      ..|++||.+... .++.++|+|++|++++++++ |..||...   ........+. .....    .+..+.+++.+++..
T Consensus       159 ~~y~aPE~~~~~~~~~~~~Di~s~G~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~li~~~l~~  236 (278)
T cd05606         159 HGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLR-GHSPFRQHKTKDKHEIDRMTL-TMAVELPDSFSPELRSLLEGLLQR  236 (278)
T ss_pred             cCCcCcHHhcCCCCCCcccchHhHHHHHHHHHh-CCCCCCCCCccchHHHHHHhh-ccCCCCCCcCCHHHHHHHHHHhhc
Confidence            468999998744 57888999999999999999 99998755   2222222222 21222    234567889999999


Q ss_pred             CcccCC-----Chhhhhh
Q psy8478          74 TENKAP-----SAVSKKR   86 (88)
Q Consensus        74 ~~~~rp-----~~~~~~~   86 (88)
                      ++.+||     ++.++.+
T Consensus       237 ~p~~R~~~~~~~~~~ll~  254 (278)
T cd05606         237 DVNRRLGCLGRGAQEVKE  254 (278)
T ss_pred             CHHhccCCCCCCHHHHHh
Confidence            999999     8877764

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=99.33  E-value=9.5e-12  Score=66.96  Aligned_cols=83  Identities=19%  Similarity=0.290  Sum_probs=59.5

Q ss_pred             cccCcchhccC-CCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHc---CCC----------------------
Q psy8478           3 RWMAPECLVDG-LFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRG---GGR----------------------   56 (88)
Q Consensus         3 ~~~~pe~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~----------------------   56 (88)
                      .|++||.+... .++.+.|+|++|++++++++ |..||......+....+..   ...                      
T Consensus       182 ~y~~PE~~~~~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (302)
T cd07864         182 WYRPPELLLGEERYGPAIDVWSCGCILGELFT-KKPIFQANQELAQLELISRLCGSPCPAVWPDVIKLPYFNTMKPKKQY  260 (302)
T ss_pred             CccChHHhcCCCCCCchhHHHHHHHHHHHHHh-CCCCCCCCChHHHHHHHHHHhCCCChhhccccccccccccccccccc
Confidence            48899987643 46778999999999999999 9999876554433332211   100                      


Q ss_pred             --------CCCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          57 --------LNRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        57 --------~~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                              ...+..+.+++..|+..+|.+||++.++.+
T Consensus       261 ~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~  298 (302)
T cd07864         261 RRRLREEFSFIPTPALDLLDHMLTLDPSKRCTAEEALN  298 (302)
T ss_pred             ccchhhhcCCCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence                    012344567888999999999999999865

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>KOG0604|consensus

Probab=99.33  E-value=2.6e-12  Score=69.04  Aligned_cols=84  Identities=19%  Similarity=0.430  Sum_probs=64.9

Q ss_pred             CCcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHH----HHHHHHHcCC-CCCCC------CCChHHHHH
Q psy8478           1 MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNV----DVLHYVRGGG-RLNRP------ANCSHLIRS   69 (88)
Q Consensus         1 ~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~-~~~~~------~~~~~~~~~   69 (88)
                      ++.|.+||++-..+|....|+|++|+++|-++. |.+||++....    ..-.+|..+. ..+-|      +...+.++.
T Consensus       226 TPyYvaPevlg~eKydkscdmwSlgVimYIlLC-GyPPFYS~hg~aispgMk~rI~~gqy~FP~pEWs~VSe~aKdlIR~  304 (400)
T KOG0604|consen  226 TPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLC-GYPPFYSNHGLAISPGMKRRIRTGQYEFPEPEWSCVSEAAKDLIRK  304 (400)
T ss_pred             cccccCHHHhCchhcCCCCCccchhHHHHHhhc-CCCcccccCCccCChhHHhHhhccCccCCChhHhHHHHHHHHHHHH
Confidence            478999999988899999999999999999888 99999865432    2344566553 22222      235578999


Q ss_pred             HHhhCcccCCChhhhh
Q psy8478          70 RNRLTENKAPSAVSKK   85 (88)
Q Consensus        70 ~l~~~~~~rp~~~~~~   85 (88)
                      +|..+|.+|.|++++.
T Consensus       305 LLkt~PteRlTI~~~m  320 (400)
T KOG0604|consen  305 LLKTEPTERLTIEEVM  320 (400)
T ss_pred             HhcCCchhheeHHHhh
Confidence            9999999999999874

>KOG0593|consensus

Probab=99.33  E-value=8.9e-12  Score=67.13  Aligned_cols=81  Identities=26%  Similarity=0.503  Sum_probs=62.7

Q ss_pred             ccCcchhcc-CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC--------------------CCCCCCC
Q psy8478           4 WMAPECLVD-GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG--------------------RLNRPAN   62 (88)
Q Consensus         4 ~~~pe~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--------------------~~~~~~~   62 (88)
                      |.+||-+.+ ..|+.++|+|++||++.++++ |.+.|.+....+.+..|....                    +.|.|..
T Consensus       167 YRaPELLvGDtqYG~pVDiWAiGCv~aEl~~-G~pL~PG~SDiDQLy~I~ktLG~L~prhq~iF~~N~~F~Gv~lP~~~~  245 (396)
T KOG0593|consen  167 YRAPELLVGDTQYGKPVDIWAIGCVFAELLT-GEPLWPGRSDIDQLYLIRKTLGNLIPRHQSIFSSNPFFHGVRLPEPEH  245 (396)
T ss_pred             ccChhhhcccCcCCCcccchhhhHHHHHHhc-CCcCCCCcchHHHHHHHHHHHcccCHHHHHHhccCCceeeeecCCCCC
Confidence            579998887 589999999999999999999 999999988887777664311                    1111111


Q ss_pred             --------------ChHHHHHHHhhCcccCCChhhhh
Q psy8478          63 --------------CSHLIRSRNRLTENKAPSAVSKK   85 (88)
Q Consensus        63 --------------~~~~~~~~l~~~~~~rp~~~~~~   85 (88)
                                    .-+++.+|+..+|.+|++.+++.
T Consensus       246 ~epLe~k~p~~s~~~ld~~k~cL~~dP~~R~sc~qll  282 (396)
T KOG0593|consen  246 PEPLERKYPKISNVLLDLLKKCLKMDPDDRLSCEQLL  282 (396)
T ss_pred             ccchhhhcccchHHHHHHHHHHhcCCccccccHHHHh
Confidence                          23577889999999999988864

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=99.33  E-value=4.7e-12  Score=66.69  Aligned_cols=84  Identities=23%  Similarity=0.519  Sum_probs=61.9

Q ss_pred             CcccCcchhc-cCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHH---HHHHHHcC-----CC--CCCCCCChHHHHHH
Q psy8478           2 TRWMAPECLV-DGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVD---VLHYVRGG-----GR--LNRPANCSHLIRSR   70 (88)
Q Consensus         2 ~~~~~pe~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~-----~~--~~~~~~~~~~~~~~   70 (88)
                      ..|++||.+. ...+..+.|+|++|++++++++ |..|+......+   ........     ..  ...+..+.+++..+
T Consensus       162 ~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~  240 (260)
T PF00069_consen  162 PEYMAPEVLQQGKKYTRKSDIWSLGIILYELLT-GKLPFEESNSDDQLEIIEKILKRPLPSSSQQSREKSEELRDLIKKM  240 (260)
T ss_dssp             GGGSCHHHHTTTSSBSTHHHHHHHHHHHHHHHH-SSSSSTTSSHHHHHHHHHHHHHTHHHHHTTSHTTSHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccc-cccccccccchhhhhhhhhcccccccccccccchhHHHHHHHHHHH
Confidence            4689999987 6678889999999999999999 989988663222   22222111     00  11125678899999


Q ss_pred             HhhCcccCCChhhhhh
Q psy8478          71 NRLTENKAPSAVSKKR   86 (88)
Q Consensus        71 l~~~~~~rp~~~~~~~   86 (88)
                      +..+|++||++.++.+
T Consensus       241 l~~~p~~R~~~~~l~~  256 (260)
T PF00069_consen  241 LSKDPEQRPSAEELLK  256 (260)
T ss_dssp             SSSSGGGSTTHHHHHT
T ss_pred             ccCChhHCcCHHHHhc
Confidence            9999999999999875

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=99.33  E-value=1.1e-11  Score=66.70  Aligned_cols=84  Identities=19%  Similarity=0.270  Sum_probs=58.7

Q ss_pred             CcccCcchhcc-CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCC------------------------
Q psy8478           2 TRWMAPECLVD-GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGR------------------------   56 (88)
Q Consensus         2 ~~~~~pe~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------------------------   56 (88)
                      +.|++||.+.. ..++.+.|+|++|++++++++ |.++|.+....+....+.....                        
T Consensus       166 ~~y~aPE~~~~~~~~~~~~Dv~slG~il~e~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (298)
T cd07841         166 RWYRAPELLFGARHYGVGVDMWSVGCIFAELLL-RVPFLPGDSDIDQLGKIFEALGTPTEENWPGVTSLPDYVEFKPFPP  244 (298)
T ss_pred             eeeeCHHHHhCCCCCCcHHHHHHHHHHHHHHHc-CCccccCCccHHHHHHHHHHcCCCchhhhhhcccccccccccccCC
Confidence            35889998754 356788999999999999999 8777766555443333321100                        


Q ss_pred             -------CCCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          57 -------LNRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        57 -------~~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                             ...+..+.+++..|+..+|.+||++.++.+
T Consensus       245 ~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~e~l~  281 (298)
T cd07841         245 TPLKQIFPAASDDALDLLQRLLTLNPNKRITARQALE  281 (298)
T ss_pred             cchhhhcccccHHHHHHHHHHhcCCcccCcCHHHHhh
Confidence                   001223446788999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=99.33  E-value=1.6e-11  Score=65.16  Aligned_cols=84  Identities=20%  Similarity=0.332  Sum_probs=57.3

Q ss_pred             CcccCcchhccC--CCCchhhHHHHHHHHHHHHhcCCCCCCCCCHH-HHHHHH-HcCCCCCCCC----CChHHHHHHHhh
Q psy8478           2 TRWMAPECLVDG--LFSSQSDVWAFGVLLWEIMSLGQQPYPARTNV-DVLHYV-RGGGRLNRPA----NCSHLIRSRNRL   73 (88)
Q Consensus         2 ~~~~~pe~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i-~~~~~~~~~~----~~~~~~~~~l~~   73 (88)
                      ..|++||.+...  .++.++|+|++|++++++++ |..|+...... ...... .....+..+.    .+.+++.+|+..
T Consensus       173 ~~~~aPE~~~~~~~~~~~~~Dv~slGvvl~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~  251 (268)
T cd06624         173 LQYMAPEVIDKGPRGYGAPADIWSLGCTIVEMAT-GKPPFIELGEPQAAMFKVGMFKIHPEIPESLSAEAKNFILRCFEP  251 (268)
T ss_pred             ccccChhhhccccccCCchhhhHHHHHHHHHHHh-CCCCCccccChhhhHhhhhhhccCCCCCcccCHHHHHHHHHHcCC
Confidence            468899987653  36788999999999999999 98888643322 111111 1111222333    345677888888


Q ss_pred             CcccCCChhhhhh
Q psy8478          74 TENKAPSAVSKKR   86 (88)
Q Consensus        74 ~~~~rp~~~~~~~   86 (88)
                      +|.+||++.++.+
T Consensus       252 ~p~~Rpt~~~ll~  264 (268)
T cd06624         252 DPDKRASAHDLLQ  264 (268)
T ss_pred             CchhCCCHHHHHh
Confidence            9999999999864

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=99.32  E-value=6.2e-12  Score=67.10  Aligned_cols=84  Identities=20%  Similarity=0.335  Sum_probs=59.1

Q ss_pred             CcccCcchhcc----CCCCchhhHHHHHHHHHHHHhcCCCCCCCC-CHHHHHHHHHcCCCCC-----CCCCChHHHHHHH
Q psy8478           2 TRWMAPECLVD----GLFSSQSDVWAFGVLLWEIMSLGQQPYPAR-TNVDVLHYVRGGGRLN-----RPANCSHLIRSRN   71 (88)
Q Consensus         2 ~~~~~pe~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~-----~~~~~~~~~~~~l   71 (88)
                      ..|++||.+.+    ..++.++|+|++|++++++++ |..|+... ...+....+..+....     .+..+.+++.+|+
T Consensus       167 ~~y~aPE~~~~~~~~~~~~~~~Di~slG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l  245 (283)
T cd06617         167 KPYMAPERINPELNQKGYDVKSDVWSLGITMIELAT-GRFPYDSWKTPFQQLKQVVEEPSPQLPAEKFSPEFQDFVNKCL  245 (283)
T ss_pred             ccccChhhcCCcccccccCccccchhhHHHHHHHHh-CCCCCCccccCHHHHHHHHhcCCCCCCccccCHHHHHHHHHHc
Confidence            35889998754    345678999999999999999 99888642 2223333333332222     2334567788899


Q ss_pred             hhCcccCCChhhhhh
Q psy8478          72 RLTENKAPSAVSKKR   86 (88)
Q Consensus        72 ~~~~~~rp~~~~~~~   86 (88)
                      ..+|.+||++.++.+
T Consensus       246 ~~~p~~Rp~~~~il~  260 (283)
T cd06617         246 KKNYKERPNYPELLQ  260 (283)
T ss_pred             cCChhhCcCHHHHhc
Confidence            999999999999875

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>PHA03210 serine/threonine kinase US3; Provisional

Probab=99.32  E-value=7.7e-12  Score=71.75  Aligned_cols=85  Identities=18%  Similarity=0.211  Sum_probs=56.3

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCC--CHHHHHHHHHcCC------------------------
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPAR--TNVDVLHYVRGGG------------------------   55 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~------------------------   55 (88)
                      ..|++||.+.+..++.+.|+|++|++++++++.+..|+...  .....+..+....                        
T Consensus       332 ~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~  411 (501)
T PHA03210        332 VATNSPEILAGDGYCEITDIWSCGLILLDMLSHDFCPIGDGGGKPGKQLLKIIDSLSVCDEEFPDPPCKLFDYIDSAEID  411 (501)
T ss_pred             cCCCCchhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCccCCCCCHHHHHHHHHHhcccChhhcCCcHHHHHHHhhhhhcc
Confidence            56899999988889999999999999999998343454322  1111111111000                        


Q ss_pred             -----------CCCCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          56 -----------RLNRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        56 -----------~~~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                                 ....+..+.+++.+||..+|++||++.++++
T Consensus       412 ~~~~~~~~~~~~~~~~~~~~~li~kmL~~DP~~Rpsa~elL~  453 (501)
T PHA03210        412 HAGHSVPPLIRNLGLPADFEYPLVKMLTFDWHLRPGAAELLA  453 (501)
T ss_pred             cCccchhhHHHhcCCChHHHHHHHHHhccCcccCcCHHHHhh
Confidence                       0011223344577899999999999999864

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.32  E-value=1.4e-11  Score=65.98  Aligned_cols=83  Identities=30%  Similarity=0.540  Sum_probs=56.1

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCC---------------CHHHHHHHHHcCCCCCCC----CCC
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPAR---------------TNVDVLHYVRGGGRLNRP----ANC   63 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~i~~~~~~~~~----~~~   63 (88)
                      .|++||.+....++.+.|+|++|++++++++ +..+....               ........+..+...+.+    ..+
T Consensus       177 ~y~apE~~~~~~~~~~~Di~slG~il~ellt-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (284)
T cd05079         177 FWYAPECLIQSKFYIASDVWSFGVTLYELLT-YCDSESSPMTLFLKMIGPTHGQMTVTRLVRVLEEGKRLPRPPNCPEEV  255 (284)
T ss_pred             cccCHHHhccCCCCccccchhhhhhhhhhhc-CCCCCccccchhhhhcccccccccHHHHHHHHHcCccCCCCCCCCHHH
Confidence            4889998877778889999999999999987 54432110               111122223333333323    345


Q ss_pred             hHHHHHHHhhCcccCCChhhhhh
Q psy8478          64 SHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        64 ~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                      .+++.+|+..+|.+||++.++.+
T Consensus       256 ~~li~~~l~~~p~~Rpt~~~il~  278 (284)
T cd05079         256 YQLMRKCWEFQPSKRTTFQNLIE  278 (284)
T ss_pred             HHHHHHHccCCcccCcCHHHHHH
Confidence            57888899999999999999865

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>KOG0614|consensus

Probab=99.31  E-value=1e-11  Score=70.84  Aligned_cols=79  Identities=19%  Similarity=0.452  Sum_probs=64.4

Q ss_pred             CCcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC-CCCC----CCCChHHHHHHHhhCc
Q psy8478           1 MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG-RLNR----PANCSHLIRSRNRLTE   75 (88)
Q Consensus         1 ~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~----~~~~~~~~~~~l~~~~   75 (88)
                      ++-|+|||++....+...+|.|++|++.++++. |.+||.+.++....+.|..|- ....    +..+.++++.+-..+|
T Consensus       582 TpEYVAPEIILnKGHD~avDyWaLGIli~ELL~-G~pPFs~~dpmktYn~ILkGid~i~~Pr~I~k~a~~Lik~LCr~~P  660 (732)
T KOG0614|consen  582 TPEYVAPEIILNKGHDRAVDYWALGILIYELLT-GSPPFSGVDPMKTYNLILKGIDKIEFPRRITKTATDLIKKLCRDNP  660 (732)
T ss_pred             CcccccchhhhccCcchhhHHHHHHHHHHHHHc-CCCCCCCCchHHHHHHHHhhhhhhhcccccchhHHHHHHHHHhcCc
Confidence            467999999999999999999999999999999 999999999999999987764 2233    4455566676666667


Q ss_pred             ccCCC
Q psy8478          76 NKAPS   80 (88)
Q Consensus        76 ~~rp~   80 (88)
                      ..|..
T Consensus       661 ~ERLG  665 (732)
T KOG0614|consen  661 TERLG  665 (732)
T ss_pred             Hhhhc
Confidence            77764

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=99.31  E-value=2.5e-11  Score=65.11  Aligned_cols=84  Identities=20%  Similarity=0.314  Sum_probs=58.1

Q ss_pred             CcccCcchhcc-CCCCchhhHHHHHHHHHHHHhcCCCCCCCCC-HHHHHHHHHcCC------------------------
Q psy8478           2 TRWMAPECLVD-GLFSSQSDVWAFGVLLWEIMSLGQQPYPART-NVDVLHYVRGGG------------------------   55 (88)
Q Consensus         2 ~~~~~pe~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~------------------------   55 (88)
                      ..|++||.+.+ ..++.+.|+|++|++++++++ |..||.... ..+....+....                        
T Consensus       167 ~~~~aPE~~~~~~~~~~~~Dv~slG~il~~l~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (291)
T cd07844         167 LWYRPPDVLLGSTEYSTSLDMWGVGCIFYEMAT-GRPLFPGSTDVEDQLHKIFRVLGTPTEETWPGVSSNPEFKPYSFPF  245 (291)
T ss_pred             cccCCcHHhhcCcccCcHHHHHHHHHHHHHHHh-CCCCCCCCccHHHHHHHHHHhcCCCChhhhhhhhhccccccccccc
Confidence            35889998765 357788999999999999999 998886554 222222111000                        


Q ss_pred             ---------CCCCC--CCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          56 ---------RLNRP--ANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        56 ---------~~~~~--~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                               .....  ..+.+++.+|+..+|.+||++.++++
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~li~~~L~~~p~~Rps~~e~l~  287 (291)
T cd07844         246 YPPRPLINHAPRLDRIPHGEELALKFLQYEPKKRISAAEAMK  287 (291)
T ss_pred             cCChhHHHhCcCCCCchhHHHHHHHHhccCcccccCHHHHhc
Confidence                     00011  33457888999999999999999875

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=99.30  E-value=1.5e-11  Score=67.57  Aligned_cols=84  Identities=18%  Similarity=0.353  Sum_probs=59.0

Q ss_pred             CcccCcchhcc-CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC------------------------C
Q psy8478           2 TRWMAPECLVD-GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG------------------------R   56 (88)
Q Consensus         2 ~~~~~pe~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~------------------------~   56 (88)
                      ..|++||.+.. ..++.+.|+|++|++++++++ |..||.+.........+....                        .
T Consensus       181 ~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (345)
T cd07877         181 RWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLT-GRTLFPGTDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQ  259 (345)
T ss_pred             CCccCHHHHhCccCCCchhhHHHHHHHHHHHHh-CCCCCCCCCHHHHHHHHHHHhCCCCHHHHhhcccHhHHHHHHHhcc
Confidence            35889998765 357788999999999999999 999987655433322221100                        0


Q ss_pred             -C---------CCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          57 -L---------NRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        57 -~---------~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                       +         ..+..+.+++..|+..+|.+||++.++++
T Consensus       260 ~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~t~~e~l~  299 (345)
T cd07877         260 MPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALA  299 (345)
T ss_pred             cCCcchhhhcCCCCHHHHHHHHHHcCCChhhcCCHHHHhc
Confidence             0         11233557888899999999999998764

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=99.30  E-value=1.4e-11  Score=65.72  Aligned_cols=83  Identities=25%  Similarity=0.397  Sum_probs=57.7

Q ss_pred             cccCcchhcc-CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC--------------------------
Q psy8478           3 RWMAPECLVD-GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG--------------------------   55 (88)
Q Consensus         3 ~~~~pe~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--------------------------   55 (88)
                      .|++||.+.. ..++.+.|+|++|++++++++ |..+|......+....+....                          
T Consensus       163 ~~~aPE~~~~~~~~~~~~Di~s~G~~l~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (283)
T cd07830         163 WYRAPEILLRSTSYSSPVDIWALGCIMAELYT-LRPLFPGSSEIDQLYKICSVLGTPTKQDWPEGYKLASKLGFRFPQFA  241 (283)
T ss_pred             cccCceeeecCcCcCCccchhhHHHHHHHHHh-CCCccCCCChHHHHHHHHHhcCCCChhhhhhHhhhhccccccccccc
Confidence            4789998754 356788999999999999999 888886654433322221100                          


Q ss_pred             -------CCCCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          56 -------RLNRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        56 -------~~~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                             ....+..+.+++..|+..+|.+||+++++.+
T Consensus       242 ~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~  279 (283)
T cd07830         242 PTSLHQLIPNASPEAIDLIKDMLRWDPKKRPTASQALQ  279 (283)
T ss_pred             cccHHHHcccCCHHHHHHHHHhcccCcccCCCHHHHhh
Confidence                   0011234567888899999999999999864

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=99.30  E-value=1.8e-11  Score=64.24  Aligned_cols=84  Identities=21%  Similarity=0.437  Sum_probs=60.9

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCC-HHHHHHHHHc-CCCCCC----CCCChHHHHHHHhhCc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPART-NVDVLHYVRG-GGRLNR----PANCSHLIRSRNRLTE   75 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~-~~~~~~----~~~~~~~~~~~l~~~~   75 (88)
                      ..|++||.......+.+.|+|++|+++++++. |..|+.... .......+.. ......    +....+++..|+..+|
T Consensus       167 ~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~p  245 (260)
T cd06606         167 PYWMAPEVIRGEEYGRAADIWSLGCTVIEMAT-GKPPWSELGNPMAALYKIGSSGEPPEIPEHLSEEAKDFLRKCLRRDP  245 (260)
T ss_pred             ccccCHhhhcCCCCCchhhHHHHHHHHHHHHh-CCCCCCCCCchHHHHHhccccCCCcCCCcccCHHHHHHHHHhCcCCh
Confidence            35789998877778889999999999999999 999987654 3333333332 122222    3445667778888889


Q ss_pred             ccCCChhhhhh
Q psy8478          76 NKAPSAVSKKR   86 (88)
Q Consensus        76 ~~rp~~~~~~~   86 (88)
                      .+||++.++.+
T Consensus       246 ~~Rp~~~~ll~  256 (260)
T cd06606         246 KKRPTADELLQ  256 (260)
T ss_pred             hhCCCHHHHhh
Confidence            99999999865

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=99.29  E-value=2.5e-11  Score=66.69  Aligned_cols=84  Identities=15%  Similarity=0.303  Sum_probs=59.1

Q ss_pred             CcccCcchhcc-CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC-C-----------------------
Q psy8478           2 TRWMAPECLVD-GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG-R-----------------------   56 (88)
Q Consensus         2 ~~~~~pe~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~-----------------------   56 (88)
                      ..|++||.+.. ..++.+.|+|++|+++++++. |..||...+.......+.... .                       
T Consensus       179 ~~y~aPE~~~~~~~~~~~~Di~slG~ll~~l~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (343)
T cd07880         179 RWYRAPEVILNWMHYTQTVDIWSVGCIMAEMLT-GKPLFKGHDHLDQLMEIMKVTGTPSKEFVQKLQSEDAKNYVKKLPR  257 (343)
T ss_pred             CcccCHHHHhCCCCCCcHHHHHHHHHHHHHHHh-CCCCCCCCCHHHHHHHHHHhcCCCCHHHHHhhcchhHHHHHHhccc
Confidence            35789998875 357788999999999999999 999997665433322221100 0                       


Q ss_pred             ----------CCCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          57 ----------LNRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        57 ----------~~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                                ...+..+.+++..|+..+|.+||++.++.+
T Consensus       258 ~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~t~~~~l~  297 (343)
T cd07880         258 FRKKDFRSLLPNANPLAVNVLEKMLVLDAESRITAAEALA  297 (343)
T ss_pred             cCcchHHHhccCCChHHHHHHHHHcCCChhhCCCHHHHhc
Confidence                      011223557888899999999999998864

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=99.29  E-value=5.2e-12  Score=70.06  Aligned_cols=84  Identities=24%  Similarity=0.421  Sum_probs=58.2

Q ss_pred             CcccCcchhccC----CCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC-CCCCCC------CChHHHHHH
Q psy8478           2 TRWMAPECLVDG----LFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG-RLNRPA------NCSHLIRSR   70 (88)
Q Consensus         2 ~~~~~pe~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~------~~~~~~~~~   70 (88)
                      +.|++||.+...    .++.++|+|++|++++++++ |..||.+.........+.... ....|.      .+.+++..+
T Consensus       207 ~~Y~aPE~~~~~~~~~~~~~~~DiwSlG~ilyell~-G~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~s~~~~~li~~~  285 (370)
T cd05621         207 PDYISPEVLKSQGGDGYYGRECDWWSVGVFLFEMLV-GDTPFYADSLVGTYSKIMDHKNSLNFPEDVEISKHAKNLICAF  285 (370)
T ss_pred             cccCCHHHHhccCCCCCCCcccCEEeehHHHHHHHh-CCCCCCCCCHHHHHHHHHhCCcccCCCCcccCCHHHHHHHHHH
Confidence            569999998753    26788999999999999999 999998877766666665432 222222      234555556


Q ss_pred             HhhCccc--CCChhhhhh
Q psy8478          71 NRLTENK--APSAVSKKR   86 (88)
Q Consensus        71 l~~~~~~--rp~~~~~~~   86 (88)
                      +...+.+  |+++.++.+
T Consensus       286 L~~~~~r~~R~~~~e~l~  303 (370)
T cd05621         286 LTDREVRLGRNGVEEIKQ  303 (370)
T ss_pred             ccCchhccCCCCHHHHhc
Confidence            5533332  778888754

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=99.29  E-value=1.2e-11  Score=65.91  Aligned_cols=83  Identities=20%  Similarity=0.308  Sum_probs=58.6

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCH----HHHHHHHHcCC---CCCCCCCChHHHHHHHhhC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTN----VDVLHYVRGGG---RLNRPANCSHLIRSRNRLT   74 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~---~~~~~~~~~~~~~~~l~~~   74 (88)
                      ..|++||...+..++.+.|+|++|++++++++ |..||.....    ..+...+....   ....+..+.+++.+|+..+
T Consensus       158 ~~y~~PE~~~~~~~~~~~Di~slG~il~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~  236 (277)
T cd05577         158 PGYMAPEVLQGEVYDFSVDWFALGCTLYEMIA-GRSPFRQRKEKVEKEELKRRTLEMAVEYPDKFSPEAKDLCEALLQKD  236 (277)
T ss_pred             CCcCCHHHhcCCCCCchhhhHHHHHHHHHHhh-CCCCCCCCcccccHHHHHhccccccccCCccCCHHHHHHHHHHccCC
Confidence            35889999877778889999999999999999 9999875433    22222221111   1123445677888999999


Q ss_pred             cccCC-----Chhhhh
Q psy8478          75 ENKAP-----SAVSKK   85 (88)
Q Consensus        75 ~~~rp-----~~~~~~   85 (88)
                      |.+||     ++.++.
T Consensus       237 p~~R~~~~~~~~~~ll  252 (277)
T cd05577         237 PEKRLGCRGGSADEVR  252 (277)
T ss_pred             hhHccCCCcccHHHHH
Confidence            99999     555554

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=99.29  E-value=2.3e-11  Score=66.51  Aligned_cols=84  Identities=18%  Similarity=0.362  Sum_probs=58.9

Q ss_pred             CcccCcchhcc-CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHc---------------------------
Q psy8478           2 TRWMAPECLVD-GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRG---------------------------   53 (88)
Q Consensus         2 ~~~~~pe~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---------------------------   53 (88)
                      ..|++||.+.. ..++.++|+|++|++++++++ |..||...........+.+                           
T Consensus       169 ~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~t-g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (328)
T cd07856         169 RYYRAPEIMLTWQKYDVEVDIWSAGCIFAEMLE-GKPLFPGKDHVNQFSIITDLLGTPPDDVINTICSENTLRFVQSLPK  247 (328)
T ss_pred             ccccCceeeeccCCcCcHHHHHHHHHHHHHHHh-CCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhccchhhHHHHhhccc
Confidence            35889998765 457889999999999999999 9988876554222111100                           


Q ss_pred             CCC-------CCCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          54 GGR-------LNRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        54 ~~~-------~~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                      ...       ...+..+.+++.+|+..+|.+||++.+++.
T Consensus       248 ~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~ell~  287 (328)
T cd07856         248 REPVPFSEKFKNADPSAIDLLEKMLVFDPQKRISAAEALA  287 (328)
T ss_pred             cCCCcHHHHcCCCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence            000       012345667888899999999999998864

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.29  E-value=7.7e-12  Score=66.84  Aligned_cols=84  Identities=27%  Similarity=0.487  Sum_probs=56.6

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCH----------------HHHHHHHHcCCCCCC----CCC
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTN----------------VDVLHYVRGGGRLNR----PAN   62 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~i~~~~~~~~----~~~   62 (88)
                      .|++||.+.+..++.+.|+|++|++++++++ +..+......                ......+..+...+.    +..
T Consensus       176 ~y~aPE~~~~~~~~~~~Di~slG~~l~el~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (284)
T cd05081         176 FWYAPESLTESKFSVASDVWSFGVVLYELFT-YSDKSCSPPAEFMRMMGNDKQGQMIVYHLIELLKNNGRLPAPPGCPAE  254 (284)
T ss_pred             EeeCHHHhccCCcChHHHHHHHHHHHHHHhh-cCCcCCCcchhhhhhcccccccccchHHHHHHHhcCCcCCCCCCCCHH
Confidence            4889999887788889999999999999988 5444321111                011122222323222    334


Q ss_pred             ChHHHHHHHhhCcccCCChhhhhhc
Q psy8478          63 CSHLIRSRNRLTENKAPSAVSKKRI   87 (88)
Q Consensus        63 ~~~~~~~~l~~~~~~rp~~~~~~~~   87 (88)
                      +.+++.+|+..+|++|||+.++.+.
T Consensus       255 ~~~li~~cl~~~p~~Rpt~~ei~~~  279 (284)
T cd05081         255 IYAIMKECWNNDPSQRPSFSELALQ  279 (284)
T ss_pred             HHHHHHHHccCChhhCCCHHHHHHH
Confidence            5667778888899999999998753

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=99.28  E-value=1.1e-11  Score=66.26  Aligned_cols=84  Identities=18%  Similarity=0.314  Sum_probs=58.2

Q ss_pred             CcccCcchhcc-CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCH--HHHHHHHHcCCCC----CCCCCChHHHHHHHhhC
Q psy8478           2 TRWMAPECLVD-GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTN--VDVLHYVRGGGRL----NRPANCSHLIRSRNRLT   74 (88)
Q Consensus         2 ~~~~~pe~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~----~~~~~~~~~~~~~l~~~   74 (88)
                      +.|++||.... ..++.++|+|++|++++++++ |..||.....  .............    ..+..+.+++.+|+..+
T Consensus       159 ~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~  237 (279)
T cd05633         159 HGYMAPEVLQKGTAYDSSADWFSLGCMLFKLLR-GHSPFRQHKTKDKHEIDRMTLTVNVELPDSFSPELKSLLEGLLQRD  237 (279)
T ss_pred             cCccCHHHhcCCCCCCchhhhHHHHHHHHHHHh-CCCCcCCCCCcCHHHHHHHhhcCCcCCccccCHHHHHHHHHHhcCC
Confidence            46899998763 457888999999999999999 9999864321  1222222211122    23445667888999999


Q ss_pred             cccCC-----Chhhhhh
Q psy8478          75 ENKAP-----SAVSKKR   86 (88)
Q Consensus        75 ~~~rp-----~~~~~~~   86 (88)
                      |.+|+     ++.++.+
T Consensus       238 p~~R~~~~~~~~~~~~~  254 (279)
T cd05633         238 VSKRLGCLGRGAQEVKE  254 (279)
T ss_pred             HHHhcCCCCCCHHHHHh
Confidence            99999     5777654

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=99.28  E-value=1.3e-11  Score=67.48  Aligned_cols=84  Identities=21%  Similarity=0.402  Sum_probs=55.7

Q ss_pred             CcccCcchhcc-----CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC-CCC-------CCCCChHHHH
Q psy8478           2 TRWMAPECLVD-----GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG-RLN-------RPANCSHLIR   68 (88)
Q Consensus         2 ~~~~~pe~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~-------~~~~~~~~~~   68 (88)
                      +.|++||.+..     ..++.++|+|++|++++++++ |..||.+....+....+.... ...       .+..+.+++.
T Consensus       167 ~~y~aPE~~~~~~~~~~~~~~~~DiwslG~~l~el~~-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~li~  245 (331)
T cd05597         167 PDYISPEILQAMEDGKGRYGPECDWWSLGVCMYEMLY-GETPFYAESLVETYGKIMNHKEHFQFPPDVTDVSEEAKDLIR  245 (331)
T ss_pred             ccccCHHHHhhccccccCCCCcceeehhhhHHHHHhh-CCCCCCCCCHHHHHHHHHcCCCcccCCCccCCCCHHHHHHHH
Confidence            56999999863     346778999999999999999 999998877766666664321 111       1223445555


Q ss_pred             HHHhhCcc--cCCChhhhhh
Q psy8478          69 SRNRLTEN--KAPSAVSKKR   86 (88)
Q Consensus        69 ~~l~~~~~--~rp~~~~~~~   86 (88)
                      +++....+  .|++++++.+
T Consensus       246 ~ll~~~~~r~~r~~~~~~l~  265 (331)
T cd05597         246 RLICSPETRLGRNGLQDFKD  265 (331)
T ss_pred             HHccCcccccCCCCHHHHhc
Confidence            55543222  2567776653

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=99.27  E-value=7.8e-12  Score=68.35  Aligned_cols=84  Identities=25%  Similarity=0.466  Sum_probs=56.0

Q ss_pred             CcccCcchhcc-----CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC-CCCCC---CCChH----HHH
Q psy8478           2 TRWMAPECLVD-----GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG-RLNRP---ANCSH----LIR   68 (88)
Q Consensus         2 ~~~~~pe~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~---~~~~~----~~~   68 (88)
                      +.|++||.+..     ..++.++|+|++|++++++++ |..||......+....+.... +...|   ..++.    ++.
T Consensus       167 ~~y~aPE~~~~~~~~~~~~~~~~DvwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~~s~~~~~li~  245 (332)
T cd05623         167 PDYISPEILQAMEDGKGKYGPECDWWSLGVCMYEMLY-GETPFYAESLVETYGKIMNHKERFQFPAQVTDVSEDAKDLIR  245 (332)
T ss_pred             ccccCHHHHhccccCCCCCCCcCCEEeeHHHHHHHhc-CCCCCCCCCHHHHHHHHhCCCccccCCCccccCCHHHHHHHH
Confidence            57999998862     356788999999999999999 999998888777777775432 12222   23344    444


Q ss_pred             HHHhhCcc--cCCChhhhhh
Q psy8478          69 SRNRLTEN--KAPSAVSKKR   86 (88)
Q Consensus        69 ~~l~~~~~--~rp~~~~~~~   86 (88)
                      .++...+.  .|++++++.+
T Consensus       246 ~ll~~~~~r~~r~~~~~~~~  265 (332)
T cd05623         246 RLICSREHRLGQNGIEDFKQ  265 (332)
T ss_pred             HHccChhhhcCCCCHHHHhC
Confidence            44433222  2466776643

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>KOG0659|consensus

Probab=99.27  E-value=3.2e-11  Score=63.84  Aligned_cols=82  Identities=18%  Similarity=0.321  Sum_probs=62.3

Q ss_pred             ccCcchhccC-CCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCC-----------------------
Q psy8478           4 WMAPECLVDG-LFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNR-----------------------   59 (88)
Q Consensus         4 ~~~pe~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----------------------   59 (88)
                      |.|||.+.+. .|+..+|+|+.||++.|++. +.+.|.+.+..+++..|-.....+.                       
T Consensus       167 YRAPELLfGsr~Yg~~VDmWavGCI~AELll-r~P~fpG~sDidQL~~If~~LGTP~~~~WP~~~~lpdY~~~~~~P~~~  245 (318)
T KOG0659|consen  167 YRAPELLFGSRQYGTGVDMWAVGCIFAELLL-RVPFFPGDSDIDQLSKIFRALGTPTPDQWPEMTSLPDYVKIQQFPKPP  245 (318)
T ss_pred             ccChHHhccchhcCCcchhhhHHHHHHHHHc-cCCCCCCCchHHHHHHHHHHcCCCCcccCccccccccHHHHhcCCCCc
Confidence            5799998875 78999999999999999998 8888888888777776632111000                       


Q ss_pred             --------CCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          60 --------PANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        60 --------~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                              ..+..+++.+++.-+|.+|.++.|..+
T Consensus       246 ~~~lf~aas~d~ldLl~~m~~ynP~~Rita~qaL~  280 (318)
T KOG0659|consen  246 LNNLFPAASSDALDLLSKMLTYNPKKRITASQALK  280 (318)
T ss_pred             cccccccccHHHHHHHHhhhccCchhcccHHHHhc
Confidence                    112345777889999999999998865

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.25  E-value=3.6e-11  Score=64.14  Aligned_cols=84  Identities=35%  Similarity=0.590  Sum_probs=58.5

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCH---------------HHHHHHHHcCCCCCCC----CCC
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTN---------------VDVLHYVRGGGRLNRP----ANC   63 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~i~~~~~~~~~----~~~   63 (88)
                      .|++||......++.+.|+|++|++++++++ |..|+.....               ......+..+...+.+    ..+
T Consensus       177 ~~~~Pe~~~~~~~~~~~Di~slG~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (284)
T cd05038         177 FWYAPECLRTSKFSSASDVWSFGVTLYELFT-YGDPSQSPPAEFLRMIGIAQGQMIVTRLLELLKEGERLPRPPSCPDEV  255 (284)
T ss_pred             cccCcHHHccCCCCcccchHHHhhhhheeec-cCCCcccccchhccccccccccccHHHHHHHHHcCCcCCCCccCCHHH
Confidence            4788998877777888999999999999999 8777653221               1122223333333222    345


Q ss_pred             hHHHHHHHhhCcccCCChhhhhhc
Q psy8478          64 SHLIRSRNRLTENKAPSAVSKKRI   87 (88)
Q Consensus        64 ~~~~~~~l~~~~~~rp~~~~~~~~   87 (88)
                      .+++..|+..+|..||++.++.+.
T Consensus       256 ~~li~~cl~~~p~~Rpt~~ei~~~  279 (284)
T cd05038         256 YDLMKLCWEAEPQDRPSFADLILI  279 (284)
T ss_pred             HHHHHHHhccChhhCCCHHHHHHH
Confidence            567778888899999999998753

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=99.25  E-value=3.5e-11  Score=64.47  Aligned_cols=85  Identities=21%  Similarity=0.391  Sum_probs=57.8

Q ss_pred             CcccCcchhccCC--CCchhhHHHHHHHHHHHHhcCCCCCCCCC----HHHHHHHHHcCCC---CCCCCCChHHHHHHHh
Q psy8478           2 TRWMAPECLVDGL--FSSQSDVWAFGVLLWEIMSLGQQPYPART----NVDVLHYVRGGGR---LNRPANCSHLIRSRNR   72 (88)
Q Consensus         2 ~~~~~pe~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~---~~~~~~~~~~~~~~l~   72 (88)
                      ..|++||.+....  .+.+.|+|++|++++++++ |..|+....    ..+....+.....   ...+..+.+++.+|+.
T Consensus       170 ~~y~aPE~~~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~  248 (288)
T cd05583         170 IEYMAPEVIRGGSGGHDKAVDWWSLGVLTFELLT-GASPFTVDGEQNSQSEISRRILKSKPPFPKTMSAEARDFIQKLLE  248 (288)
T ss_pred             ccccCHHHhcCCCCCCcchhhhHHHHHHHHHHHh-CCCCcccCcccchHHHHHHHHHccCCCCCcccCHHHHHHHHHHhc
Confidence            3588999876543  5678999999999999999 998885322    2222233322211   1123455677888999


Q ss_pred             hCcccCCChhhhhhc
Q psy8478          73 LTENKAPSAVSKKRI   87 (88)
Q Consensus        73 ~~~~~rp~~~~~~~~   87 (88)
                      .+|.+|||+.++.++
T Consensus       249 ~~p~~R~t~~~~~~~  263 (288)
T cd05583         249 KDPKKRLGANGADEI  263 (288)
T ss_pred             CCHhhccCcchHHHH
Confidence            999999997766543

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=99.24  E-value=8.9e-11  Score=63.03  Aligned_cols=84  Identities=24%  Similarity=0.428  Sum_probs=58.0

Q ss_pred             CcccCcchhccC-CCCchhhHHHHHHHHHHHHhcCCCCCCCCCH-HHHHHHHHc--C---------------C-------
Q psy8478           2 TRWMAPECLVDG-LFSSQSDVWAFGVLLWEIMSLGQQPYPARTN-VDVLHYVRG--G---------------G-------   55 (88)
Q Consensus         2 ~~~~~pe~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~--~---------------~-------   55 (88)
                      ..|++||.+.+. .++.+.|+|++|++++++++ |..||.+... .+.+..+..  +               +       
T Consensus       167 ~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~-g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (291)
T cd07870         167 LWYRPPDVLLGATDYSSALDIWGAGCIFIEMLQ-GQPAFPGVSDVFEQLEKIWTVLGVPTEDTWPGVSKLPNYKPEWFLP  245 (291)
T ss_pred             ccccCCceeecCCCCCcHHHHHHHHHHHHHHHh-CCCCCCCchhHHHHHHHHHHHcCCCChhhhhhhhhcccccchhccc
Confidence            358899987653 46778999999999999999 9999875432 222221110  0               0       


Q ss_pred             -----------CCCCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          56 -----------RLNRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        56 -----------~~~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                                 ....+....+++.+|+..+|.+|||+.++..
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~ll~~~l~~dp~~R~t~~~~l~  287 (291)
T cd07870         246 CKPQQLRVVWKRLSRPPKAEDLASQMLMMFPKDRISAQDALL  287 (291)
T ss_pred             cCCcchhhhccccCCChHHHHHHHHHhCcCcccCcCHHHHhc
Confidence                       0011234557889999999999999999864

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=99.23  E-value=2.8e-11  Score=65.47  Aligned_cols=40  Identities=25%  Similarity=0.581  Sum_probs=33.1

Q ss_pred             CcccCcchhccC-CCCchhhHHHHHHHHHHHHhcCCCCCCCC
Q psy8478           2 TRWMAPECLVDG-LFSSQSDVWAFGVLLWEIMSLGQQPYPAR   42 (88)
Q Consensus         2 ~~~~~pe~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   42 (88)
                      ..|++||.+.+. .++.++|+|++|++++++++ |..||.+.
T Consensus       179 ~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~-~~~~~~~~  219 (316)
T cd07842         179 IWYRAPELLLGARHYTKAIDIWAIGCIFAELLT-LEPIFKGR  219 (316)
T ss_pred             ccccCHHHHhCCCCCCcHHHHHHHHHHHHHHHh-cCCCCcCC
Confidence            358999987654 57788999999999999999 88888644

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=99.23  E-value=3.2e-11  Score=72.91  Aligned_cols=80  Identities=21%  Similarity=0.265  Sum_probs=57.7

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCC------CCCCCCChHHHHHHHhhCc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGR------LNRPANCSHLIRSRNRLTE   75 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------~~~~~~~~~~~~~~l~~~~   75 (88)
                      +.|++||.+.+..++.++|+|++|++++++++ |..||................+      ...|..+.+.+.+|+..+|
T Consensus       195 ~~YmAPE~l~g~~~S~kSDIWSLGVILyELLT-G~~PF~~~~~~ki~~~~~i~~P~~~~p~~~iP~~L~~LI~rcL~~DP  273 (932)
T PRK13184        195 PDYMAPERLLGVPASESTDIYALGVILYQMLT-LSFPYRRKKGRKISYRDVILSPIEVAPYREIPPFLSQIAMKALAVDP  273 (932)
T ss_pred             CCCCCHHHhcCCCCCcHhHHHHHHHHHHHHHH-CCCCCCCcchhhhhhhhhccChhhccccccCCHHHHHHHHHHccCCh
Confidence            56999999988888899999999999999999 9999976544333222111111      1234456677888999999


Q ss_pred             ccCCChh
Q psy8478          76 NKAPSAV   82 (88)
Q Consensus        76 ~~rp~~~   82 (88)
                      .+|++..
T Consensus       274 ~kR~ss~  280 (932)
T PRK13184        274 AERYSSV  280 (932)
T ss_pred             hhCcCHH
Confidence            9997643

>KOG1035|consensus

Probab=99.23  E-value=3.7e-11  Score=73.61  Aligned_cols=80  Identities=25%  Similarity=0.436  Sum_probs=59.9

Q ss_pred             cccCcchhccC---CCCchhhHHHHHHHHHHHHhcCCCCCC-CCCHHHHHHHHHcCCCCCCC----C---CChHHHHHHH
Q psy8478           3 RWMAPECLVDG---LFSSQSDVWAFGVLLWEIMSLGQQPYP-ARTNVDVLHYVRGGGRLNRP----A---NCSHLIRSRN   71 (88)
Q Consensus         3 ~~~~pe~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~----~---~~~~~~~~~l   71 (88)
                      -|+|||.+.+.   .|+.+.|+|++|+++++++.    ||. ++....++..++.+.-+..+    .   .-...|+.++
T Consensus       780 lYvAPEll~~~~~~~Yn~KiDmYSLGIVlFEM~y----PF~TsMERa~iL~~LR~g~iP~~~~f~~~~~~~e~slI~~Ll  855 (1351)
T KOG1035|consen  780 LYVAPELLSDTSSNKYNSKIDMYSLGIVLFEMLY----PFGTSMERASILTNLRKGSIPEPADFFDPEHPEEASLIRWLL  855 (1351)
T ss_pred             eeecHHHhcccccccccchhhhHHHHHHHHHHhc----cCCchHHHHHHHHhcccCCCCCCcccccccchHHHHHHHHHh
Confidence            48999988754   48999999999999999987    343 45566777777755322221    1   1245788899


Q ss_pred             hhCcccCCChhhhhh
Q psy8478          72 RLTENKAPSAVSKKR   86 (88)
Q Consensus        72 ~~~~~~rp~~~~~~~   86 (88)
                      ..+|++||||.++++
T Consensus       856 ~hdP~kRPtA~eLL~  870 (1351)
T KOG1035|consen  856 SHDPSKRPTATELLN  870 (1351)
T ss_pred             cCCCccCCCHHHHhh
Confidence            999999999999864

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.22  E-value=2.7e-11  Score=73.74  Aligned_cols=85  Identities=20%  Similarity=0.305  Sum_probs=56.7

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCC-----HHHHHHHHHcCC------CCC------CCC---
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPART-----NVDVLHYVRGGG------RLN------RPA---   61 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~------~~~------~~~---   61 (88)
                      ..|+|||.+....++.++|+|++|++++++++ |..|+....     ..+.........      .+.      .+.   
T Consensus       842 ~~y~aPE~~~~~~~~~~sDv~S~Gvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  920 (968)
T PLN00113        842 SAYVAPETRETKDITEKSDIYGFGLILIELLT-GKSPADAEFGVHGSIVEWARYCYSDCHLDMWIDPSIRGDVSVNQNEI  920 (968)
T ss_pred             ccccCcccccCCCCCcccchhhHHHHHHHHHh-CCCCCCcccCCCCcHHHHHHHhcCccchhheeCccccCCCCccHHHH
Confidence            57999999988888999999999999999999 988874321     111111000000      000      000   


Q ss_pred             -CChHHHHHHHhhCcccCCChhhhhhc
Q psy8478          62 -NCSHLIRSRNRLTENKAPSAVSKKRI   87 (88)
Q Consensus        62 -~~~~~~~~~l~~~~~~rp~~~~~~~~   87 (88)
                       .+.+.+.+|+..+|.+||+++++.+.
T Consensus       921 ~~~~~l~~~Cl~~~P~~RPt~~evl~~  947 (968)
T PLN00113        921 VEVMNLALHCTATDPTARPCANDVLKT  947 (968)
T ss_pred             HHHHHHHHhhCcCCchhCcCHHHHHHH
Confidence             12345667899999999999998753

>KOG0600|consensus

Probab=99.21  E-value=4.7e-11  Score=67.67  Aligned_cols=82  Identities=27%  Similarity=0.449  Sum_probs=64.5

Q ss_pred             ccCcchhccC-CCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHc--CCC-----C------------------
Q psy8478           4 WMAPECLVDG-LFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRG--GGR-----L------------------   57 (88)
Q Consensus         4 ~~~pe~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~-----~------------------   57 (88)
                      |.+||.+.+. .|+..+|+|+.||++.+++. |++.+.+....+++..|..  |.+     .                  
T Consensus       285 YRpPELLLG~t~Yg~aVDlWS~GCIl~El~~-gkPI~~G~tEveQl~kIfklcGSP~e~~W~~~kLP~~~~~kp~~~y~r  363 (560)
T KOG0600|consen  285 YRPPELLLGATSYGTAVDLWSVGCILAELFL-GKPILQGRTEVEQLHKIFKLCGSPTEDYWPVSKLPHATIFKPQQPYKR  363 (560)
T ss_pred             ccChHHhcCCcccccceeehhhhHHHHHHHc-CCCCcCCccHHHHHHHHHHHhCCCChhccccccCCcccccCCCCcccc
Confidence            6799999975 79999999999999999999 9999999988888777632  111     0                  


Q ss_pred             -------CCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          58 -------NRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        58 -------~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                             ..+..+.+++..+|..+|.+|.||.+.++
T Consensus       364 ~l~E~~~~~~~~~l~Ll~~lL~ldP~kR~tA~~aL~  399 (560)
T KOG0600|consen  364 RLRETFKDFPASALDLLEKLLSLDPDKRGTASSALQ  399 (560)
T ss_pred             hHHHHhccCCHHHHHHHHHHhccCccccccHHHHhc
Confidence                   01112446788899999999999998764

>KOG0671|consensus

Probab=99.19  E-value=2.6e-12  Score=70.47  Aligned_cols=83  Identities=22%  Similarity=0.382  Sum_probs=61.5

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHH---HHcCCC-----------------C-----
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHY---VRGGGR-----------------L-----   57 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---i~~~~~-----------------~-----   57 (88)
                      .|.|||++.+.+++.++|+||+||+++|+.+ |...|+.....+.+.+   |.+..+                 .     
T Consensus       274 HYRAPEViLgLGwS~pCDvWSiGCIL~Elyt-G~~LFqtHen~EHLaMMerIlGp~P~~mi~r~~~~Kyf~~~rldw~e~  352 (415)
T KOG0671|consen  274 HYRAPEVILGLGWSQPCDVWSIGCILVELYT-GETLFQTHENLEHLAMMERILGPIPSRMIKKTRKEKYFRRGRLDWPEV  352 (415)
T ss_pred             ccCCchheeccCcCCccCceeeeeEEEEeec-cceecccCCcHHHHHHHHHhhCCCcHHHhhhhhhHhhhhcccccCccc
Confidence            5899999999999999999999999999988 9998987665554433   222100                 0     


Q ss_pred             ------------CCCC------------CChHHHHHHHhhCcccCCChhhhhh
Q psy8478          58 ------------NRPA------------NCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        58 ------------~~~~------------~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                                  +.|.            .+-++++.+|.-+|.+|+|+.+++.
T Consensus       353 ~~~~~~k~v~~~ckpl~~~~~~~d~e~~~LfDLl~~mL~fDP~~RiTl~EAL~  405 (415)
T KOG0671|consen  353 SSKGKSKYVFEPCKPLKKYMLQDDLEHVQLFDLLRRMLEFDPARRITLREALS  405 (415)
T ss_pred             cccccchhhhcCCccHHHHhccCcHHHhHHHHHHHHHHccCccccccHHHHhc
Confidence                        0000            1235788899999999999998753

>KOG0586|consensus

Probab=99.19  E-value=7e-12  Score=71.88  Aligned_cols=85  Identities=21%  Similarity=0.434  Sum_probs=69.6

Q ss_pred             CCcccCcchhccCCCC-chhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcC-CCCC--CCCCChHHHHHHHhhCcc
Q psy8478           1 MTRWMAPECLVDGLFS-SQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGG-GRLN--RPANCSHLIRSRNRLTEN   76 (88)
Q Consensus         1 ~~~~~~pe~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~--~~~~~~~~~~~~l~~~~~   76 (88)
                      ++.|.+||...+..|. ..+|+|++|+++|.++. |..||++....++...+..+ ++.+  ...+|.++|+++|..+|.
T Consensus       217 sppyAaPEl~~g~~y~gpe~D~Wslgvvly~LV~-GsLPFDG~~lk~Lr~rvl~gk~rIp~~ms~dce~lLrk~lvl~Ps  295 (596)
T KOG0586|consen  217 SPPYAAPELFNGKKYDGPEVDIWSLGVVLYALVE-GSLPFDGQNLKELRPRVLRGKYRIPFYMSCDCEDLLRKFLVLNPS  295 (596)
T ss_pred             CCCccChHhhcCcccCCcceehhhhhhhheeeee-cccccCCcccccccchheeeeecccceeechhHHHHHHhhccCcc
Confidence            4678999999887775 58999999999999999 99999988877776665443 3433  346789999999999999


Q ss_pred             cCCChhhhhh
Q psy8478          77 KAPSAVSKKR   86 (88)
Q Consensus        77 ~rp~~~~~~~   86 (88)
                      +|++++++-+
T Consensus       296 kr~~~dqim~  305 (596)
T KOG0586|consen  296 KRGPCDQIMK  305 (596)
T ss_pred             ccCCHHHhhh
Confidence            9999998743

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=99.17  E-value=2.8e-11  Score=63.40  Aligned_cols=73  Identities=18%  Similarity=0.293  Sum_probs=51.5

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCC----CCCChHHHHHHHhhCcccC
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNR----PANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~l~~~~~~r   78 (88)
                      .|++||......++.+.|+|++|++++++++ |..++......     +........    +..+.+++.+|+..+|.+|
T Consensus       147 ~y~aPE~~~~~~~~~~~DvwslG~il~el~~-g~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~R  220 (237)
T cd05576         147 MYCAPEVGGISEETEACDWWSLGAILFELLT-GKTLVECHPSG-----INTHTTLNIPEWVSEEARSLLQQLLQFNPTER  220 (237)
T ss_pred             cccCCcccCCCCCCchhhHHHHHHHHHHHHH-CcchhhcCchh-----cccccccCCcccCCHHHHHHHHHHccCCHHHh
Confidence            4899998877777889999999999999999 87766432211     111111122    3345568888999999999


Q ss_pred             CCh
Q psy8478          79 PSA   81 (88)
Q Consensus        79 p~~   81 (88)
                      +++
T Consensus       221 ~~~  223 (237)
T cd05576         221 LGA  223 (237)
T ss_pred             cCC
Confidence            986

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>KOG1290|consensus

Probab=99.16  E-value=4.2e-11  Score=67.82  Aligned_cols=37  Identities=24%  Similarity=0.644  Sum_probs=33.8

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCC
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYP   40 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   40 (88)
                      +|.+||++.+..|+..+|+||++|+.|++.+ |...|.
T Consensus       416 QYRapEVllGsgY~~~ADiWS~AC~~FELaT-GDyLFe  452 (590)
T KOG1290|consen  416 QYRAPEVLLGSGYSTSADIWSTACMAFELAT-GDYLFE  452 (590)
T ss_pred             hccCcceeecCCCCCchhHHHHHHHHHHhhc-Cceeec
Confidence            6899999999999999999999999999999 866663

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=99.15  E-value=3.8e-11  Score=65.68  Aligned_cols=51  Identities=25%  Similarity=0.637  Sum_probs=41.8

Q ss_pred             CcccCcchhcc-----CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHc
Q psy8478           2 TRWMAPECLVD-----GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRG   53 (88)
Q Consensus         2 ~~~~~pe~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   53 (88)
                      +.|++||.+..     ..++.++|+|++|++++++++ |..||...+..+....+..
T Consensus       167 ~~y~aPE~~~~~~~~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~  222 (331)
T cd05624         167 PDYISPEILQAMEDGMGKYGPECDWWSLGVCMYEMLY-GETPFYAESLVETYGKIMN  222 (331)
T ss_pred             cccCCHHHHhccccCCCCCCCcccEEeeehhhhhhhh-CCCCccCCCHHHHHHHHHc
Confidence            46899998864     356778999999999999999 9999988777776666643

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>KOG0195|consensus

Probab=99.14  E-value=1.8e-10  Score=61.80  Aligned_cols=85  Identities=24%  Similarity=0.412  Sum_probs=65.0

Q ss_pred             CCcccCcchhccCCC---CchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHH-HcCCCCCCCCCChH----HHHHHHh
Q psy8478           1 MTRWMAPECLVDGLF---SSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYV-RGGGRLNRPANCSH----LIRSRNR   72 (88)
Q Consensus         1 ~~~~~~pe~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~----~~~~~l~   72 (88)
                      ++.|++||.+....-   -..+|.|||.+++|++.+ ...||....+.++--+| .+|.++..|.+.+.    ++.-|+.
T Consensus       349 ~pawmspealqrkped~n~raadmwsfaillwel~t-revpfadlspmecgmkialeglrv~ippgis~hm~klm~icmn  427 (448)
T KOG0195|consen  349 SPAWMSPEALQRKPEDLNIRAADMWSFAILLWELNT-REVPFADLSPMECGMKIALEGLRVHIPPGISRHMNKLMNICMN  427 (448)
T ss_pred             CcccCCHHHHhcCchhcchhhhhHHHHHHHHHHhhc-cccccccCCchhhhhhhhhccccccCCCCccHHHHHHHHHHhc
Confidence            478999999875432   247999999999999988 89999888887776666 57777777776654    4555667


Q ss_pred             hCcccCCChhhhhh
Q psy8478          73 LTENKAPSAVSKKR   86 (88)
Q Consensus        73 ~~~~~rp~~~~~~~   86 (88)
                      .+|.+||....+.-
T Consensus       428 edpgkrpkfdmivp  441 (448)
T KOG0195|consen  428 EDPGKRPKFDMIVP  441 (448)
T ss_pred             CCCCcCCCcceehh
Confidence            77888888776643

>KOG0695|consensus

Probab=99.14  E-value=2.3e-10  Score=62.92  Aligned_cols=78  Identities=26%  Similarity=0.480  Sum_probs=58.4

Q ss_pred             CCcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCC-------CCHHHHHHHH-HcCCCCCCC----CCChHHHH
Q psy8478           1 MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPA-------RTNVDVLHYV-RGGGRLNRP----ANCSHLIR   68 (88)
Q Consensus         1 ~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~i-~~~~~~~~~----~~~~~~~~   68 (88)
                      ++.|.|||++.+..|+..+|+|.+|+++++++. |..||.-       .+.++.+..+ .+. ....|    ..++..++
T Consensus       414 tpnyiapeilrgeeygfsvdwwalgvlmfemma-grspfdivgm~n~d~ntedylfqvilek-qiriprslsvkas~vlk  491 (593)
T KOG0695|consen  414 TPNYIAPEILRGEEYGFSVDWWALGVLMFEMMA-GRSPFDIVGMDNPDMNTEDYLFQVILEK-QIRIPRSLSVKASHVLK  491 (593)
T ss_pred             CCcccchhhhcccccCceehHHHHHHHHHHHHc-CCCCcceecCCCcccchhHHHHHHHhhh-cccccceeehhhHHHHH
Confidence            478999999999999999999999999999999 9999952       2234444333 322 22233    34667888


Q ss_pred             HHHhhCcccCCC
Q psy8478          69 SRNRLTENKAPS   80 (88)
Q Consensus        69 ~~l~~~~~~rp~   80 (88)
                      .+|.++|..|..
T Consensus       492 gflnkdp~erlg  503 (593)
T KOG0695|consen  492 GFLNKDPKERLG  503 (593)
T ss_pred             HhhcCCcHHhcC
Confidence            899999888865

>KOG0587|consensus

Probab=99.09  E-value=2.4e-11  Score=72.32  Aligned_cols=85  Identities=22%  Similarity=0.393  Sum_probs=66.5

Q ss_pred             CCcccCcchhcc-----CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCC--CCCCCh----HHHHH
Q psy8478           1 MTRWMAPECLVD-----GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLN--RPANCS----HLIRS   69 (88)
Q Consensus         1 ~~~~~~pe~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~----~~~~~   69 (88)
                      ++.|||||++..     ..|...+|+|++|+...++.. |.+|+....+...+..|-.+.++.  .|+.++    ++|..
T Consensus       186 tP~WMAPEViac~e~~d~tyd~R~D~WsLGITaIElad-G~PPl~DmHPmraLF~IpRNPPPkLkrp~kWs~~FndFIs~  264 (953)
T KOG0587|consen  186 TPYWMAPEVIACDESPDATYDYRSDLWSLGITAIEMAE-GAPPLCDMHPMRALFLIPRNPPPKLKRPKKWSKKFNDFIST  264 (953)
T ss_pred             CcccccceeeecccCCCCCcccccchhhccceeehhcC-CCCCccCcchhhhhccCCCCCCccccchhhHHHHHHHHHHH
Confidence            478999999874     246778999999999999999 999999999988888876654432  244444    46667


Q ss_pred             HHhhCcccCCChhhhhh
Q psy8478          70 RNRLTENKAPSAVSKKR   86 (88)
Q Consensus        70 ~l~~~~~~rp~~~~~~~   86 (88)
                      +|..+..+||+..+..+
T Consensus       265 cL~Kd~e~RP~~~~ll~  281 (953)
T KOG0587|consen  265 CLVKDYEQRPSTEELLK  281 (953)
T ss_pred             HHhhccccCcchhhhcc
Confidence            78888899999888765

>KOG1094|consensus

Probab=99.08  E-value=3.9e-10  Score=65.46  Aligned_cols=84  Identities=35%  Similarity=0.573  Sum_probs=61.9

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHh-cCCCCCCCCCHHHHHHHHH---cCC----CCCCCCCChHHHHHHHhh
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMS-LGQQPYPARTNVDVLHYVR---GGG----RLNRPANCSHLIRSRNRL   73 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~---~~~----~~~~~~~~~~~~~~~l~~   73 (88)
                      ++||++|.+.-++|+.++|+|.+|+.+|+++. +...||......+......   ...    -+..|..|+..+++++..
T Consensus       703 iRwmawEsillgkFttaSDvWafgvTlwE~~~~C~e~Py~~lt~e~vven~~~~~~~~~~~~~l~~P~~cp~~lyelml~  782 (807)
T KOG1094|consen  703 IRWMAWESILLGKFTTASDVWAFGVTLWEVFMLCREQPYSQLTDEQVVENAGEFFRDQGRQVVLSRPPACPQGLYELMLR  782 (807)
T ss_pred             eeehhHHHHHhccccchhhhhhhHHHHHHHHHHHhhCchhhhhHHHHHHhhhhhcCCCCcceeccCCCcCcHHHHHHHHH
Confidence            68999999999999999999999999999775 3567887666665554432   111    134577787777776665


Q ss_pred             Cc----ccCCChhhhh
Q psy8478          74 TE----NKAPSAVSKK   85 (88)
Q Consensus        74 ~~----~~rp~~~~~~   85 (88)
                      ||    ..||+.+++-
T Consensus       783 Cw~~es~~RPsFe~lh  798 (807)
T KOG1094|consen  783 CWRRESEQRPSFEQLH  798 (807)
T ss_pred             HhchhhhcCCCHHHHH
Confidence            54    7899988873

>KOG0667|consensus

Probab=99.08  E-value=1.2e-10  Score=67.19  Aligned_cols=50  Identities=24%  Similarity=0.549  Sum_probs=45.6

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHc
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRG   53 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   53 (88)
                      .|.|||++.+..|+.+.|+||+||++.|+.+ |.+.|.+.+..+++.+|.+
T Consensus       353 fYRAPEVILGlpY~~~IDmWSLGCIlAEL~t-G~PLfpG~ne~DQl~~I~e  402 (586)
T KOG0667|consen  353 FYRAPEVILGLPYDTAIDMWSLGCILAELFT-GEPLFPGDNEYDQLARIIE  402 (586)
T ss_pred             ccccchhhccCCCCCccceeehhhhHHhHhc-CccccCCCCHHHHHHHHHH
Confidence            5899999999999999999999999999999 9999999998888877754

>KOG0658|consensus

Probab=99.06  E-value=5e-10  Score=61.26  Aligned_cols=82  Identities=23%  Similarity=0.424  Sum_probs=62.0

Q ss_pred             cccCcchhccC-CCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHc--CCC-----------------------
Q psy8478           3 RWMAPECLVDG-LFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRG--GGR-----------------------   56 (88)
Q Consensus         3 ~~~~pe~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~-----------------------   56 (88)
                      .|.|||-+.+. .|+.+.|+||.||++.|++. |.+.|.+.+..+++..|..  |.+                       
T Consensus       190 yYRaPELifga~~Yt~~IDiWSaGCV~aELl~-g~plFpG~s~~dQL~eIik~lG~Pt~e~I~~mn~~y~~~~~p~ik~~  268 (364)
T KOG0658|consen  190 YYRAPELIFGATEYTTSIDIWSAGCVMAELLK-GQPLFPGDSSVDQLVEIIKVLGTPTREDIKSMNPNYTEFKFPQIKAH  268 (364)
T ss_pred             cccCHHHHcCccccCceeEEhhhhHHHHHHhc-CCcccCCCCHHHHHHHHHHHhCCCCHHHHhhcCcccccccCcccccc
Confidence            57899999875 78999999999999999999 9999988877666554432  110                       


Q ss_pred             -------CCCCCCChHHHHHHHhhCcccCCChhhhh
Q psy8478          57 -------LNRPANCSHLIRSRNRLTENKAPSAVSKK   85 (88)
Q Consensus        57 -------~~~~~~~~~~~~~~l~~~~~~rp~~~~~~   85 (88)
                             ...+.+.-+++.+++.-.|.+|.++.++.
T Consensus       269 ~~~~~~~~~~~~d~~dll~~~L~Y~P~~R~~~~~~l  304 (364)
T KOG0658|consen  269 PWHKVFFKRLPPDALDLLSKLLQYSPSKRLSALEAL  304 (364)
T ss_pred             cceeecccCCCHHHHHHHHHHhccChhhcCCHHHHh
Confidence                   01123345678889999999999988764

>KOG0594|consensus

Probab=99.06  E-value=1.8e-09  Score=58.70  Aligned_cols=82  Identities=22%  Similarity=0.402  Sum_probs=62.3

Q ss_pred             ccCcchhccC-CCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHc--CCC-----C----------CC------
Q psy8478           4 WMAPECLVDG-LFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRG--GGR-----L----------NR------   59 (88)
Q Consensus         4 ~~~pe~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~-----~----------~~------   59 (88)
                      |.+||.+.+. .|+...|+|++||++.+++. +...|.+....+.+..|-+  +.+     +          ..      
T Consensus       186 YRaPEvLlGs~~Ys~~vDiWs~GcIfaEm~~-~~~LFpG~se~~ql~~If~~lGtP~e~~Wp~v~~~~~~k~~f~~~~~~  264 (323)
T KOG0594|consen  186 YRAPEVLLGSTSYSTSVDIWSLGCIFAEMFT-RRPLFPGDSEIDQLFRIFRLLGTPNEKDWPGVSSLPDYKAPFPKWPGP  264 (323)
T ss_pred             ccCHHHhcCCCcCCCCcchHhHHHHHHHHHh-CCCCCCCCcHHHHHHHHHHHcCCCCccCCCCccccccccccCcCCCCc
Confidence            6899999876 78999999999999999999 9999988887777766622  110     0          00      


Q ss_pred             -------C---CCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          60 -------P---ANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        60 -------~---~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                             +   .+..+.+.++|+.++.+|.+++...+
T Consensus       265 ~~l~~~~~~~~~~~~dll~~~L~y~p~~R~Sa~~al~  301 (323)
T KOG0594|consen  265 KDLSSILPKLDPDGIELLSKLLQYDPAKRISAKGALT  301 (323)
T ss_pred             cchHHhccccCccHHHHHHHHhccCcccCcCHHHHhc
Confidence                   0   13446788899999999999987653

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=99.03  E-value=1.3e-09  Score=63.68  Aligned_cols=68  Identities=10%  Similarity=0.131  Sum_probs=41.1

Q ss_pred             chhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC----------CCCCCC--------------CChHHHHHHHh
Q psy8478          17 SQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG----------RLNRPA--------------NCSHLIRSRNR   72 (88)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~----------~~~~~~--------------~~~~~~~~~l~   72 (88)
                      .+.|+|++|+++++++. +..+... ........+....          ......              ...+++..||.
T Consensus       358 ~k~DVwSlGviL~el~~-~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~dLi~~mL~  435 (566)
T PLN03225        358 DRFDIYSAGLIFLQMAF-PNLRSDS-NLIQFNRQLKRNDYDLVAWRKLVEPRASPDLRRGFEVLDLDGGAGWELLKSMMR  435 (566)
T ss_pred             CCcccHHHHHHHHHHHh-CcCCCch-HHHHHHHHHHhcCCcHHHHHHhhccccchhhhhhhhhccccchHHHHHHHHHcc
Confidence            35699999999999987 5544321 1111111111100          000000              11268999999


Q ss_pred             hCcccCCChhhhhh
Q psy8478          73 LTENKAPSAVSKKR   86 (88)
Q Consensus        73 ~~~~~rp~~~~~~~   86 (88)
                      .+|.+|||+.++++
T Consensus       436 ~dP~kR~ta~e~L~  449 (566)
T PLN03225        436 FKGRQRISAKAALA  449 (566)
T ss_pred             CCcccCCCHHHHhC
Confidence            99999999999865

>KOG0612|consensus

Probab=99.02  E-value=6.3e-10  Score=68.21  Aligned_cols=78  Identities=22%  Similarity=0.445  Sum_probs=57.5

Q ss_pred             CCcccCcchhc----c-CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcC-CCCCCC------CCChHHHH
Q psy8478           1 MTRWMAPECLV----D-GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGG-GRLNRP------ANCSHLIR   68 (88)
Q Consensus         1 ~~~~~~pe~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~------~~~~~~~~   68 (88)
                      +|-|.+||++.    + +.|+..+|+|++|+.+|+++. |..||++....+...+|..- ....+|      ..+.++|.
T Consensus       239 TPDYISPEvLqs~~~~~g~yG~ecDwWSlGV~~YEMly-G~TPFYadslveTY~KIm~hk~~l~FP~~~~VSeeakdLI~  317 (1317)
T KOG0612|consen  239 TPDYISPEVLQSQGDGKGEYGRECDWWSLGVFMYEMLY-GETPFYADSLVETYGKIMNHKESLSFPDETDVSEEAKDLIE  317 (1317)
T ss_pred             CCCccCHHHHHhhcCCccccCCccchhhhHHHHHHHHc-CCCcchHHHHHHHHHHHhchhhhcCCCcccccCHHHHHHHH
Confidence            46799999987    2 468899999999999999999 99999999999888888432 222333      34455555


Q ss_pred             HHHhhCcccCCC
Q psy8478          69 SRNRLTENKAPS   80 (88)
Q Consensus        69 ~~l~~~~~~rp~   80 (88)
                      .++.. +..|..
T Consensus       318 ~ll~~-~e~RLg  328 (1317)
T KOG0612|consen  318 ALLCD-REVRLG  328 (1317)
T ss_pred             HHhcC-hhhhcc
Confidence            55443 666666

>KOG0663|consensus

Probab=99.02  E-value=2.3e-09  Score=58.75  Aligned_cols=82  Identities=21%  Similarity=0.419  Sum_probs=61.8

Q ss_pred             ccCcchhccC-CCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHc--CCCC-------------------CCC-
Q psy8478           4 WMAPECLVDG-LFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRG--GGRL-------------------NRP-   60 (88)
Q Consensus         4 ~~~pe~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~-------------------~~~-   60 (88)
                      |.+||.+.+. .|+...|+||+||++.+++. +.+.|.+....+.+++|-.  |.+.                   ..| 
T Consensus       243 YRaPELLLG~~tyst~iDMWSvGCI~aE~l~-~kPlf~G~sE~dQl~~If~llGtPte~iwpg~~~lp~~k~~~f~~~py  321 (419)
T KOG0663|consen  243 YRAPELLLGAKTYSTAVDMWSVGCIFAELLT-QKPLFPGKSEIDQLDKIFKLLGTPSEAIWPGYSELPAVKKMTFSEHPY  321 (419)
T ss_pred             ecCHHHhcCCcccCcchhhhhHHHHHHHHHh-cCCCCCCCchHHHHHHHHHHhCCCccccCCCccccchhhccccCCCCc
Confidence            6899999876 68999999999999999999 9998988877777666522  1110                   000 


Q ss_pred             -------------CCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          61 -------------ANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        61 -------------~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                                   ..--+++..++..+|.+|.||++.++
T Consensus       322 n~lr~kF~~~~lse~g~~Lln~llt~dP~kR~tA~~~L~  360 (419)
T KOG0663|consen  322 NNLRKKFGALSLSEQGFDLLNKLLTYDPGKRITAEDGLK  360 (419)
T ss_pred             hhhhhhccccccchhHHHHHHHHhccCccccccHHHhhc
Confidence                         11225778899999999999998764

>KOG0584|consensus

Probab=99.01  E-value=1.1e-09  Score=63.44  Aligned_cols=83  Identities=20%  Similarity=0.330  Sum_probs=65.9

Q ss_pred             CCcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCC-CCHHHHHHHHHcCCCCC-C----CCCChHHHHHHHhhC
Q psy8478           1 MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPA-RTNVDVLHYVRGGGRLN-R----PANCSHLIRSRNRLT   74 (88)
Q Consensus         1 ~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~-~----~~~~~~~~~~~l~~~   74 (88)
                      +|.|||||+.- ..|+..+|+|+||..+.++.+ +.-||.- .++.++..++..|..+. +    .....++|.+||.. 
T Consensus       207 TPEFMAPEmYE-E~YnE~VDVYaFGMCmLEMvT-~eYPYsEC~n~AQIYKKV~SGiKP~sl~kV~dPevr~fIekCl~~-  283 (632)
T KOG0584|consen  207 TPEFMAPEMYE-ENYNELVDVYAFGMCMLEMVT-SEYPYSECTNPAQIYKKVTSGIKPAALSKVKDPEVREFIEKCLAT-  283 (632)
T ss_pred             CccccChHHHh-hhcchhhhhhhhhHHHHHHHh-ccCChhhhCCHHHHHHHHHcCCCHHHhhccCCHHHHHHHHHHhcC-
Confidence            47899999864 679999999999999999999 9889864 46778888888776442 1    23456677777777 


Q ss_pred             cccCCChhhhhh
Q psy8478          75 ENKAPSAVSKKR   86 (88)
Q Consensus        75 ~~~rp~~~~~~~   86 (88)
                      ...|+++.++++
T Consensus       284 ~~~R~sa~eLL~  295 (632)
T KOG0584|consen  284 KSERLSAKELLK  295 (632)
T ss_pred             chhccCHHHHhh
Confidence            899999998864

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=98.99  E-value=1.3e-09  Score=58.56  Aligned_cols=82  Identities=21%  Similarity=0.404  Sum_probs=53.8

Q ss_pred             CcccCcchhccC--CCCchhhHHHHHHHHHHHHhcCCCCCCCCC----HHHHHHHHHcCCCCCCCCC----ChHHHHHHH
Q psy8478           2 TRWMAPECLVDG--LFSSQSDVWAFGVLLWEIMSLGQQPYPART----NVDVLHYVRGGGRLNRPAN----CSHLIRSRN   71 (88)
Q Consensus         2 ~~~~~pe~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~----~~~~~~~~l   71 (88)
                      ..|++||.+...  .++.+.|+|++|++++++++ |..|+....    ..+....+... ..+.+..    +.+++.+|+
T Consensus       170 ~~y~aPE~~~~~~~~~~~~~Dv~slG~~l~~ll~-g~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ll~~~l  247 (290)
T cd05613         170 IEYMAPDIVRGGDGGHDKAVDWWSMGVLMYELLT-GASPFTVDGEKNSQAEISRRILKS-EPPYPQEMSALAKDIIQRLL  247 (290)
T ss_pred             cccCChhhccCCCCCCCccccHHHHHHHHHHHhc-CCCCCCcCCccccHHHHHHHhhcc-CCCCCccCCHHHHHHHHHHh
Confidence            358899987643  45678999999999999999 998885322    22233333222 2233333    456777888


Q ss_pred             hhCcccCC-----Chhhhh
Q psy8478          72 RLTENKAP-----SAVSKK   85 (88)
Q Consensus        72 ~~~~~~rp-----~~~~~~   85 (88)
                      ..+|.+|+     +++++.
T Consensus       248 ~~~p~~R~~~~~~~~~~l~  266 (290)
T cd05613         248 MKDPKKRLGCGPSDADEIK  266 (290)
T ss_pred             cCCHHHhcCCCCCCHHHHH
Confidence            88888897     455543

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>KOG1006|consensus

Probab=98.99  E-value=1.8e-10  Score=61.35  Aligned_cols=83  Identities=24%  Similarity=0.352  Sum_probs=59.1

Q ss_pred             cccCcchhccC--CCCchhhHHHHHHHHHHHHhcCCCCCCCCC-HHHHHHHHHcCCCCC--CCC-------CChHHHHHH
Q psy8478           3 RWMAPECLVDG--LFSSQSDVWAFGVLLWEIMSLGQQPYPART-NVDVLHYVRGGGRLN--RPA-------NCSHLIRSR   70 (88)
Q Consensus         3 ~~~~pe~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~--~~~-------~~~~~~~~~   70 (88)
                      -|||||.+...  .|...+|+||+|+.++++.+ |..||...+ ..+.+..+..+.++-  .+.       .+..++.-|
T Consensus       232 pYmAPERi~p~~~gyDiRSDvWSLGITL~EvAt-G~fPyr~w~svfeql~~Vv~gdpp~l~~~~~~~~~s~~~~~fintC  310 (361)
T KOG1006|consen  232 PYMAPERIDPSDKGYDIRSDVWSLGITLYEVAT-GNFPYRKWDSVFEQLCQVVIGDPPILLFDKECVHYSFSMVRFINTC  310 (361)
T ss_pred             cccChhccCCccCCcchhhhhhhhcceEeeeec-CCCCcchHHHHHHHHHHHHcCCCCeecCcccccccCHHHHHHHHHH
Confidence            48999998743  58889999999999999999 999997654 345555555554332  122       234556667


Q ss_pred             HhhCcccCCChhhhhh
Q psy8478          71 NRLTENKAPSAVSKKR   86 (88)
Q Consensus        71 l~~~~~~rp~~~~~~~   86 (88)
                      +.++-+.||+..++.+
T Consensus       311 l~Kd~~~Rpky~~Lk~  326 (361)
T KOG1006|consen  311 LIKDRSDRPKYDDLKK  326 (361)
T ss_pred             hhcccccCcchhhhhc
Confidence            7777888998777654

>KOG0607|consensus

Probab=98.97  E-value=2.2e-09  Score=58.72  Aligned_cols=82  Identities=22%  Similarity=0.455  Sum_probs=59.7

Q ss_pred             cccCcchhc-----cCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCH---------------HHHHHHHHcCCCCCCCC-
Q psy8478           3 RWMAPECLV-----DGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTN---------------VDVLHYVRGGGRLNRPA-   61 (88)
Q Consensus         3 ~~~~pe~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~i~~~~~~~~~~-   61 (88)
                      -|||||++-     ...|....|.||+|+++|-+++ |.+||.+.-.               ..+...|.+|. ..+|+ 
T Consensus       251 EfMAPEVVd~fv~qA~~YDKrCDlwSLGvIlYImLs-GYpPFvG~Cg~dCGWdrGe~Cr~CQ~~LFesIQEGk-YeFPdk  328 (463)
T KOG0607|consen  251 EFMAPEVVDVFVDQATFYDKRCDLWSLGVILYIMLS-GYPPFVGHCGADCGWDRGEVCRVCQNKLFESIQEGK-YEFPDK  328 (463)
T ss_pred             hhcchhHHhhhccccccccccccHHHHHHHHHHHHh-CCCCccCccCCcCCccCCCccHHHHHHHHHHHhccC-CcCChh
Confidence            589999875     2368889999999999999999 9999975321               22344566553 33332 


Q ss_pred             -------CChHHHHHHHhhCcccCCChhhhhh
Q psy8478          62 -------NCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        62 -------~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                             ...+++..++.+++..|.++.++..
T Consensus       329 dWahIS~eakdlisnLlvrda~~rlsa~~vln  360 (463)
T KOG0607|consen  329 DWAHISSEAKDLISNLLVRDAKQRLSAAQVLN  360 (463)
T ss_pred             hhHHhhHHHHHHHHHHHhccHHhhhhhhhccC
Confidence                   3556778888899999998887753

>KOG0606|consensus

Probab=98.89  E-value=3.6e-09  Score=64.75  Aligned_cols=78  Identities=22%  Similarity=0.383  Sum_probs=64.9

Q ss_pred             CCcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC------CCCCCCCChHHHHHHHhhC
Q psy8478           1 MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG------RLNRPANCSHLIRSRNRLT   74 (88)
Q Consensus         1 ~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~------~~~~~~~~~~~~~~~l~~~   74 (88)
                      ++.|.+||++.-..|+..+|+|++|+++++.+- |+-||.+..+++++..+....      ....+.+..+.+.++|+.+
T Consensus       221 TPeyiaPeVilrqgygkpvdwwamGiIlyeFLV-gcvpffGdtpeelfg~visd~i~wpE~dea~p~Ea~dli~~LL~qn  299 (1205)
T KOG0606|consen  221 TPEYIAPEVILRQGYGKPVDWWAMGIILYEFLV-GCVPFFGDTPEELFGQVISDDIEWPEEDEALPPEAQDLIEQLLRQN  299 (1205)
T ss_pred             CccccChhhhhhhccCCCccHHHHHHHHHHHhe-eeeeccCCCHHHHHhhhhhhhccccccCcCCCHHHHHHHHHHHHhC
Confidence            467999999998899999999999999999988 999999999998887764322      2345667888999999988


Q ss_pred             cccCC
Q psy8478          75 ENKAP   79 (88)
Q Consensus        75 ~~~rp   79 (88)
                      +..|.
T Consensus       300 p~~Rl  304 (1205)
T KOG0606|consen  300 PLCRL  304 (1205)
T ss_pred             hHhhc
Confidence            87665

>KOG0984|consensus

Probab=98.89  E-value=4.7e-09  Score=54.39  Aligned_cols=57  Identities=30%  Similarity=0.451  Sum_probs=45.0

Q ss_pred             cccCcchhcc----CCCCchhhHHHHHHHHHHHHhcCCCCCCC-CCHHHHHHHHHcCCCCCCC
Q psy8478           3 RWMAPECLVD----GLFSSQSDVWAFGVLLWEIMSLGQQPYPA-RTNVDVLHYVRGGGRLNRP   60 (88)
Q Consensus         3 ~~~~pe~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~   60 (88)
                      .|||||.+..    ..|+.++|+||+|+..+++.. +..||.. ..+.+++..+.+...+..|
T Consensus       213 pYmaPEri~~e~n~~gY~vksDvWSLGItmiElA~-lr~PY~~w~tpF~qLkqvVeep~P~Lp  274 (282)
T KOG0984|consen  213 PYMAPERINPELNQKGYSVKSDVWSLGITMIEMAI-LRFPYESWGTPFQQLKQVVEEPSPQLP  274 (282)
T ss_pred             ccCChhhcCcccCcccceeehhhhhhhhhhhhhhh-ccccccccCCHHHHHHHHhcCCCCCCc
Confidence            4899998863    368899999999999999999 8889874 4677777777766555444

>KOG1027|consensus

Probab=98.88  E-value=2.9e-10  Score=67.68  Aligned_cols=83  Identities=19%  Similarity=0.333  Sum_probs=60.6

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCC---CCCCC--CChHHHHHHHhhCcc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGR---LNRPA--NCSHLIRSRNRLTEN   76 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~--~~~~~~~~~l~~~~~   76 (88)
                      -.|.|||.+....-...+|++++||+++.+++.|.-||.. ...+..+-+...+.   ...-.  .+.++|.+|+..+|.
T Consensus       678 ~GW~APE~L~~~~~~~avDiFslGCvfyYvltgG~HpFGd-~~~R~~NIl~~~~~L~~L~~~~d~eA~dLI~~ml~~dP~  756 (903)
T KOG1027|consen  678 SGWQAPEQLREDRKTQAVDIFSLGCVFYYVLTGGSHPFGD-SLERQANILTGNYTLVHLEPLPDCEAKDLISRMLNPDPQ  756 (903)
T ss_pred             ccccCHHHHhccccCcccchhhcCceEEEEecCCccCCCc-hHHhhhhhhcCccceeeeccCchHHHHHHHHHhcCCCcc
Confidence            4699999999877677999999999999999966778753 32222222222221   11122  578899999999999


Q ss_pred             cCCChhhhh
Q psy8478          77 KAPSAVSKK   85 (88)
Q Consensus        77 ~rp~~~~~~   85 (88)
                      .||+|.++.
T Consensus       757 ~RPsa~~VL  765 (903)
T KOG1027|consen  757 LRPSATDVL  765 (903)
T ss_pred             cCCCHHHHh
Confidence            999999985

>KOG0665|consensus

Probab=98.85  E-value=4.1e-09  Score=57.31  Aligned_cols=83  Identities=17%  Similarity=0.266  Sum_probs=61.9

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC-------------------------
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRL-------------------------   57 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-------------------------   57 (88)
                      .|.|||.+.+..|...+|+|+.||.+.+++. |...|.+.+..+.+.++.+....                         
T Consensus       182 yyrapevil~~~~ke~vdiwSvGci~gEli~-~~Vlf~g~d~idQ~~ki~~~lgtpd~~F~~qL~~~~r~yv~~~~~y~~  260 (369)
T KOG0665|consen  182 YYRAPEVILGMGYKENVDIWSVGCIMGELIL-GTVLFPGKDHIDQWNKIIEQLGTPDPSFMKQLQPTVRNYVENRPQYQA  260 (369)
T ss_pred             eccCchheeccCCcccchhhhhhhHHHHHhh-ceEEecCchHHHHHHHHHHHhcCCCHHHHHHhhHHHHHHhhcChHhhc
Confidence            4689999988889999999999999999999 88888887776555544321100                         


Q ss_pred             -----CC---------------CCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          58 -----NR---------------PANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        58 -----~~---------------~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                           ..               ...+.+++.++|..+|++|-+++++++
T Consensus       261 ~~f~~~fpD~~f~~~~e~~~~~~~~ardll~~MLvi~pe~Risv~daL~  309 (369)
T KOG0665|consen  261 ISFSELFPDSLFPVVLEGSKLDCSLARDLLSKMLVIDPEKRISVDDALR  309 (369)
T ss_pred             cchhhhCCcccccccccCCccchHHHHHHHHHhhccChhhcccHHHHhc
Confidence                 00               012456888899999999999988764

>KOG0669|consensus

Probab=98.80  E-value=4.7e-08  Score=52.24  Aligned_cols=81  Identities=20%  Similarity=0.322  Sum_probs=59.1

Q ss_pred             ccCcchhccC-CCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHc--CC-----C--------------CCCC-
Q psy8478           4 WMAPECLVDG-LFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRG--GG-----R--------------LNRP-   60 (88)
Q Consensus         4 ~~~pe~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~-----~--------------~~~~-   60 (88)
                      |.+||-+.+. .|+.+.|+|+.||++.++++ +.+-+++....+.+..|..  |.     .              .+.+ 
T Consensus       194 YrppEllLG~r~yg~~iDiWgAgCimaeMwt-rspimqgnteqqql~~Is~LcGs~tkevWP~~d~lpL~~sie~ePl~~  272 (376)
T KOG0669|consen  194 YRPPELLLGDREYGPPIDIWGAGCIMAEMWT-RSPIMQGNTEQQQLHLISQLCGSITKEVWPNVDNLPLYQSIELEPLPK  272 (376)
T ss_pred             cCCHHHhhcccccCCcchhHhHHHHHHHHHc-cCccccCChHHHHHHHHHHHhccCCcccCCCcccchHHHhccCCCCCc
Confidence            6788888764 78899999999999999999 8777777666655555532  10     0              0111 


Q ss_pred             ----------------CCChHHHHHHHhhCcccCCChhhhh
Q psy8478          61 ----------------ANCSHLIRSRNRLTENKAPSAVSKK   85 (88)
Q Consensus        61 ----------------~~~~~~~~~~l~~~~~~rp~~~~~~   85 (88)
                                      ....+++.+++..+|.+|+++.+++
T Consensus       273 ~~~rkv~n~~kp~~kd~~a~dLle~ll~~DP~kR~~ad~al  313 (376)
T KOG0669|consen  273 GQKRKVKNRLKPYVKDDEALDLLEKLLKLDPTKRIDADQAL  313 (376)
T ss_pred             chhhhhhhhcccccCChhHHHHHHHHhccCcccCcchHhhh
Confidence                            1245688899999999999998864

>KOG0576|consensus

Probab=98.80  E-value=7.8e-09  Score=60.90  Aligned_cols=85  Identities=21%  Similarity=0.351  Sum_probs=61.8

Q ss_pred             CCcccCcchhc---cCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHH-cCCCCCC---CCCC----hHHHHH
Q psy8478           1 MTRWMAPECLV---DGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVR-GGGRLNR---PANC----SHLIRS   69 (88)
Q Consensus         1 ~~~~~~pe~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~---~~~~----~~~~~~   69 (88)
                      +++||+||+..   ...|+..+|+|+.|+...++.. -++|.....+.+.+.... .++.++.   +..+    -++++.
T Consensus       175 tpywmapEvaaverkggynqlcdiwa~gitAiel~e-Lqpplfdlhpmr~l~LmTkS~~qpp~lkDk~kws~~fh~fvK~  253 (829)
T KOG0576|consen  175 TPYWMAPEVAAVERKGGYNQLCDIWALGITAIELGE-LQPPLFDLHPMRALFLMTKSGFQPPTLKDKTKWSEFFHNFVKG  253 (829)
T ss_pred             CccccchhHHHHHhcccccccccccccccchhhhhh-cCCcccccchHHHHHHhhccCCCCCcccCCccchHHHHHHHHH
Confidence            47899999865   3568899999999999999877 677777777777777764 3443322   2334    455666


Q ss_pred             HHhhCcccCCChhhhhh
Q psy8478          70 RNRLTENKAPSAVSKKR   86 (88)
Q Consensus        70 ~l~~~~~~rp~~~~~~~   86 (88)
                      .+-.+|.+||+++..++
T Consensus       254 altknpKkRptaeklL~  270 (829)
T KOG0576|consen  254 ALTKNPKKRPTAEKLLQ  270 (829)
T ss_pred             HhcCCCccCCChhhhee
Confidence            67788999999987765

>KOG0666|consensus

Probab=98.67  E-value=1.8e-07  Score=51.33  Aligned_cols=38  Identities=26%  Similarity=0.571  Sum_probs=31.2

Q ss_pred             CcccCcchhccC-CCCchhhHHHHHHHHHHHHhcCCCCCC
Q psy8478           2 TRWMAPECLVDG-LFSSQSDVWAFGVLLWEIMSLGQQPYP   40 (88)
Q Consensus         2 ~~~~~pe~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   40 (88)
                      +-|.|||.+.+. -|....|+|++||++.++++ ..+.|.
T Consensus       203 iWYRAPELLLGa~hYT~AiDvWAiGCIfaElLt-l~PlF~  241 (438)
T KOG0666|consen  203 IWYRAPELLLGARHYTKAIDVWAIGCIFAELLT-LEPLFK  241 (438)
T ss_pred             EEecChHHhcccccccchhhhHHHHHHHHHHHc-cCcccc
Confidence            347899999986 57889999999999999987 655554

>KOG0670|consensus

Probab=98.66  E-value=4.9e-09  Score=60.50  Aligned_cols=46  Identities=30%  Similarity=0.621  Sum_probs=40.5

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHH
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLH   49 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   49 (88)
                      .|.+||++.+..|....|+||+||.+|++.+ |+..|.+....+++.
T Consensus       600 FYRaPEIiLG~~yd~~iD~WSvgctLYElYt-GkIlFpG~TNN~MLr  645 (752)
T KOG0670|consen  600 FYRAPEIILGLPYDYPIDTWSVGCTLYELYT-GKILFPGRTNNQMLR  645 (752)
T ss_pred             hccCcceeecCcccCCccceeeceeeEEeec-cceecCCCCcHHHHH
Confidence            5789999999999999999999999999888 999998877665544

>KOG0608|consensus

Probab=98.63  E-value=4.7e-08  Score=57.96  Aligned_cols=50  Identities=32%  Similarity=0.600  Sum_probs=42.6

Q ss_pred             CCcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHH
Q psy8478           1 MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYV   51 (88)
Q Consensus         1 ~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   51 (88)
                      ++.|++||++....|...+|+|+.|+++++++. |..||.+..+.+.-.++
T Consensus       834 t~nyiapevl~r~g~~q~cdwws~gvil~em~~-g~~pf~~~tp~~tq~kv  883 (1034)
T KOG0608|consen  834 TPNYIAPEVLARTGYTQLCDWWSVGVILYEMLV-GQPPFLADTPGETQYKV  883 (1034)
T ss_pred             CCcccChHHhcccCccccchhhHhhHHHHHHhh-CCCCccCCCCCcceeee
Confidence            367999999998899999999999999999999 99999877665544443

>KOG1240|consensus

Probab=98.59  E-value=3.7e-07  Score=56.93  Aligned_cols=81  Identities=22%  Similarity=0.250  Sum_probs=57.1

Q ss_pred             CcccCcchhccC----------C-CCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC--------CCCCC
Q psy8478           2 TRWMAPECLVDG----------L-FSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRL--------NRPAN   62 (88)
Q Consensus         2 ~~~~~pe~~~~~----------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------~~~~~   62 (88)
                      ++|.|||.+...          . ..++.|++++||+..|++.-|.++|..   . .+...+.+...        -....
T Consensus       191 tCYiAPERFv~~~~~~~~~q~~~~L~paMDIFS~GCViaELf~Eg~PlF~L---S-QL~aYr~~~~~~~e~~Le~Ied~~  266 (1431)
T KOG1240|consen  191 TCYIAPERFVSALGKTSVGQDAPLLTPAMDIFSAGCVIAELFLEGRPLFTL---S-QLLAYRSGNADDPEQLLEKIEDVS  266 (1431)
T ss_pred             eeecChHhhhccccccccCCcccccChhhhhhhhhHHHHHHHhcCCCcccH---H-HHHhHhccCccCHHHHHHhCcCcc
Confidence            578999987642          1 456789999999999999867888752   1 11111222110        01337


Q ss_pred             ChHHHHHHHhhCcccCCChhhhhh
Q psy8478          63 CSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        63 ~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                      ..+++..|++++|.+|.+|++.++
T Consensus       267 ~Rnlil~Mi~rdPs~RlSAedyL~  290 (1431)
T KOG1240|consen  267 LRNLILSMIQRDPSKRLSAEDYLQ  290 (1431)
T ss_pred             HHHHHHHHHccCchhccCHHHHHH
Confidence            889999999999999999999865

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=98.56  E-value=3.8e-07  Score=47.11  Aligned_cols=57  Identities=25%  Similarity=0.441  Sum_probs=43.7

Q ss_pred             cccCcchh-ccCCCCchhhHHHHHHHHHHHHhcCCCCCCC-C-CHHHHHHHHHcCCCCCCC
Q psy8478           3 RWMAPECL-VDGLFSSQSDVWAFGVLLWEIMSLGQQPYPA-R-TNVDVLHYVRGGGRLNRP   60 (88)
Q Consensus         3 ~~~~pe~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~i~~~~~~~~~   60 (88)
                      .|++||.. ....++.+.|+|++|++++++++ |..||.. . ....+.+.+..+.+...|
T Consensus       164 ~~~~pe~~~~~~~~~~~~Dv~~lG~~~~~l~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~  223 (225)
T smart00221      164 FYLAPEVLLGGKGYGEAVDIWSLGVILYELLW-GPEPFSGEGEFTSLLSDVWSFGVPLLWE  223 (225)
T ss_pred             CcCCHhHhcCCCCCCchhhHHHHHHHHHHHHH-CCCCccccchhHHHHHHHHhcCCccccc
Confidence            47889987 44566678999999999999999 9999977 3 445677777776544443

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>KOG4236|consensus

Probab=98.55  E-value=3.1e-09  Score=61.58  Aligned_cols=81  Identities=20%  Similarity=0.347  Sum_probs=60.1

Q ss_pred             CCcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcC---CCC----CCCCCChHHHHHHHhh
Q psy8478           1 MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGG---GRL----NRPANCSHLIRSRNRL   73 (88)
Q Consensus         1 ~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~~----~~~~~~~~~~~~~l~~   73 (88)
                      ++.|++||++....|+...|.|+.|++.|-.++ |..||...  +++...|...   +++    .....+-++|.++|++
T Consensus       729 TPAYLaPEVLrnkGyNrSLDMWSVGVIiYVsLS-GTFPFNEd--EdIndQIQNAaFMyPp~PW~eis~~AidlIn~LLqV  805 (888)
T KOG4236|consen  729 TPAYLAPEVLRNKGYNRSLDMWSVGVIIYVSLS-GTFPFNED--EDINDQIQNAAFMYPPNPWSEISPEAIDLINNLLQV  805 (888)
T ss_pred             CccccCHHHHhhccccccccceeeeEEEEEEec-ccccCCCc--cchhHHhhccccccCCCchhhcCHHHHHHHHHHHHH
Confidence            478999999999999999999999999998888 99998532  2333444322   111    1123456788899999


Q ss_pred             CcccCCChhhh
Q psy8478          74 TENKAPSAVSK   84 (88)
Q Consensus        74 ~~~~rp~~~~~   84 (88)
                      ...+|.+.+..
T Consensus       806 km~kRysvdk~  816 (888)
T KOG4236|consen  806 KMRKRYSVDKS  816 (888)
T ss_pred             HHHHhcchHhh
Confidence            99999887654

>KOG1187|consensus

Probab=98.46  E-value=1e-07  Score=53.26  Aligned_cols=84  Identities=21%  Similarity=0.358  Sum_probs=54.2

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCC---H---HHH-HHHHHcCC-----CCCCC-CC------
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPART---N---VDV-LHYVRGGG-----RLNRP-AN------   62 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~-~~~i~~~~-----~~~~~-~~------   62 (88)
                      ..|++||.......+.+.|+|+||+++.++++ |+.+.....   .   .+- ...+..+.     .+... ..      
T Consensus       242 ~gY~~PEy~~~g~lt~KsDVySFGVvllElit-gr~~~d~~~~~~~~~l~~w~~~~~~~~~~~eiiD~~l~~~~~~~~~~  320 (361)
T KOG1187|consen  242 FGYLAPEYASTGKLTEKSDVYSFGVVLLELIT-GRKAVDQSRPRGELSLVEWAKPLLEEGKLREIVDPRLKEGEYPDEKE  320 (361)
T ss_pred             CccCChhhhccCCcCcccccccchHHHHHHHh-CCcccCCCCCcccccHHHHHHHHHHCcchhheeCCCccCCCCChHHH
Confidence            46899999988788899999999999999999 887665322   1   111 11222211     01111 11      


Q ss_pred             ---ChHHHHHHHhhCcccCCChhhhhh
Q psy8478          63 ---CSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        63 ---~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                         +......|++.++..||++.++.+
T Consensus       321 ~~~~~~~a~~C~~~~~~~RP~m~~Vv~  347 (361)
T KOG1187|consen  321 VKKLAELALRCLRPDPKERPTMSQVVK  347 (361)
T ss_pred             HHHHHHHHHHHcCcCCCcCcCHHHHHH
Confidence               112333588888999999999754

>KOG0664|consensus

Probab=98.44  E-value=1.5e-07  Score=50.99  Aligned_cols=49  Identities=20%  Similarity=0.504  Sum_probs=42.0

Q ss_pred             cccCcchhccC-CCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHH
Q psy8478           3 RWMAPECLVDG-LFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVR   52 (88)
Q Consensus         3 ~~~~pe~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   52 (88)
                      .|.+||.+.+. .|+...|+||.||++.+++- .+..|+...+.+.++.|.
T Consensus       222 YYRAPEiLMGaRhYs~AvDiWSVGCIFaELLg-RrILFQAq~PiqQL~lIt  271 (449)
T KOG0664|consen  222 YYRAPELLMGARRYTGAVDIWSVGCIFAELLQ-RKILFQAAGPIEQLQMII  271 (449)
T ss_pred             HhccHHHhhcchhhcCccceehhhHHHHHHHh-hhhhhhccChHHHHHHHH
Confidence            47899999986 68899999999999999888 778888888887777764

>KOG1033|consensus

Probab=98.42  E-value=6.1e-07  Score=51.67  Aligned_cols=80  Identities=20%  Similarity=0.291  Sum_probs=54.0

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCC-C---CCCChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLN-R---PANCSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~---~~~~~~~~~~~l~~~~~~   77 (88)
                      ..||+||.+++..|+.++|+|++|+++++++..-...+.   ......-+..+..++ .   .+.-..++.++++..|.+
T Consensus       426 ~~YmsPEQi~g~~y~~kvdIyaLGlil~EL~~~f~T~~e---r~~t~~d~r~g~ip~~~~~d~p~e~~ll~~lls~~p~~  502 (516)
T KOG1033|consen  426 LLYMSPEQIRGQQYSEKVDIYALGLILAELLIQFSTQFE---RIATLTDIRDGIIPPEFLQDYPEEYTLLQQLLSPSPEE  502 (516)
T ss_pred             cccCCHHHHhhhhhhhhcchhhHHHHHHHHHHHhccHHH---HHHhhhhhhcCCCChHHhhcCcHHHHHHHHhcCCCccc
Confidence            468999999999999999999999999998872222221   222233344443221 1   122336788999999999


Q ss_pred             CCChhhh
Q psy8478          78 APSAVSK   84 (88)
Q Consensus        78 rp~~~~~   84 (88)
                      ||++..+
T Consensus       503 RP~~~~~  509 (516)
T KOG1033|consen  503 RPSAIEV  509 (516)
T ss_pred             CchHHHH
Confidence            9965543

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=98.40  E-value=1.2e-06  Score=51.02  Aligned_cols=69  Identities=13%  Similarity=0.039  Sum_probs=40.9

Q ss_pred             hhhHHHHHHHHHHHHhcCCCCCCCCCHHH-----------HHHHHHcC-CCC----CCCCCChHHHHHHHhhCc---ccC
Q psy8478          18 QSDVWAFGVLLWEIMSLGQQPYPARTNVD-----------VLHYVRGG-GRL----NRPANCSHLIRSRNRLTE---NKA   78 (88)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~i~~~-~~~----~~~~~~~~~~~~~l~~~~---~~r   78 (88)
                      ..|+|++|+++++++.+...|+.......           ....+... ...    .......+++.++|..++   .+|
T Consensus       412 ~~DvwSlGvil~em~~~~l~p~~~~~~f~~~~~~~~~~~~~~r~~~~~~~~~~~~d~~s~~~~dLi~~LL~~~~~~~~~R  491 (507)
T PLN03224        412 LFDSYTAGVLLMQMCVPELRPVANIRLFNTELRQYDNDLNRWRMYKGQKYDFSLLDRNKEAGWDLACKLITKRDQANRGR  491 (507)
T ss_pred             ccchhhHHHHHHHHHhCCCCCccchhhhhhHHhhccchHHHHHhhcccCCCcccccccChHHHHHHHHHhccCCCCcccC
Confidence            36999999999999983334664322111           01111111 111    122345678888998765   689


Q ss_pred             CChhhhhh
Q psy8478          79 PSAVSKKR   86 (88)
Q Consensus        79 p~~~~~~~   86 (88)
                      +|++++++
T Consensus       492 lSa~eaL~  499 (507)
T PLN03224        492 LSVGQALS  499 (507)
T ss_pred             CCHHHHhC
Confidence            99998864

>KOG0603|consensus

Probab=98.38  E-value=3.3e-07  Score=53.66  Aligned_cols=73  Identities=25%  Similarity=0.398  Sum_probs=54.1

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcC-C--CCCCCCCChHHHHHHHhhCcccC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGG-G--RLNRPANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~--~~~~~~~~~~~~~~~l~~~~~~r   78 (88)
                      .-||+||+++  .+...+|+|++|++.+++++ |..||..    +....|... .  +......++..+.++..+++..|
T Consensus       157 ~eymApEI~~--gh~~a~D~ws~gvl~fellt-g~~pf~~----~~~~~Il~~~~~~p~~l~~~a~~~~~~l~~r~p~nr  229 (612)
T KOG0603|consen  157 YEYRAPEIIN--GHLSAADWWSFGVLAFELLT-GTLPFGG----DTMKRILKAELEMPRELSAEARSLFRQLFKRNPENR  229 (612)
T ss_pred             hhhhhhHhhh--ccCCcccchhhhhhHHHHhh-CCCCCch----HHHHHHhhhccCCchhhhHHHHHHHHHHHhhCHHHH
Confidence            4589999987  56678999999999999999 9999986    444445432 1  12233456778888888888888


Q ss_pred             CCh
Q psy8478          79 PSA   81 (88)
Q Consensus        79 p~~   81 (88)
                      ..+
T Consensus       230 Lg~  232 (612)
T KOG0603|consen  230 LGA  232 (612)
T ss_pred             hcc
Confidence            765

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=98.38  E-value=7.8e-07  Score=45.20  Aligned_cols=55  Identities=36%  Similarity=0.651  Sum_probs=45.9

Q ss_pred             cccCcchhccC-CCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCChHHHHHHHhhCcccCCCh
Q psy8478           3 RWMAPECLVDG-LFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPANCSHLIRSRNRLTENKAPSA   81 (88)
Q Consensus         3 ~~~~pe~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~rp~~   81 (88)
                      .|++||..... ..+...|+|++|++++++                             ....+.+..++..++.+||++
T Consensus       158 ~~~~pe~~~~~~~~~~~~D~~~lg~~~~~l-----------------------------~~~~~~l~~~l~~~p~~R~~~  208 (215)
T cd00180         158 AYMAPEVLLGKGYYSEKSDIWSLGVILYEL-----------------------------PELKDLIRKMLQKDPEKRPSA  208 (215)
T ss_pred             CccChhHhcccCCCCchhhhHHHHHHHHHH-----------------------------HHHHHHHHHHhhCCcccCcCH
Confidence            57788887765 667789999999999886                             456678888999999999999


Q ss_pred             hhhhh
Q psy8478          82 VSKKR   86 (88)
Q Consensus        82 ~~~~~   86 (88)
                      .++.+
T Consensus       209 ~~l~~  213 (215)
T cd00180         209 KEILE  213 (215)
T ss_pred             HHHhh
Confidence            99875

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>KOG0662|consensus

Probab=98.35  E-value=3.7e-06  Score=43.22  Aligned_cols=83  Identities=20%  Similarity=0.370  Sum_probs=57.0

Q ss_pred             ccCcchhccC-CCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHc--CC-----CC---------CCC-----C
Q psy8478           4 WMAPECLVDG-LFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRG--GG-----RL---------NRP-----A   61 (88)
Q Consensus         4 ~~~pe~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~-----~~---------~~~-----~   61 (88)
                      |.+|.++.+. -|+...|.|+.||++.++...|.+.|.+.+-.+.+.+|-.  |.     .+         +.|     .
T Consensus       167 yrppdvlfgakly~tsidmwsagcifaelanagrplfpg~dvddqlkrif~~lg~p~ed~wps~t~lpdyk~yp~ypatt  246 (292)
T KOG0662|consen  167 YRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEDQWPSMTKLPDYKPYPIYPATT  246 (292)
T ss_pred             ccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCcHHHHHHHHHHHhCCCccccCCccccCCCCcccCCccccc
Confidence            5677777765 4788999999999999999878888888776666655521  10     00         000     0


Q ss_pred             C-----------ChHHHHHHHhhCcccCCChhhhhh
Q psy8478          62 N-----------CSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        62 ~-----------~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                      .           -.+++.+++.-+|..|.+|+...+
T Consensus       247 swsqivp~lns~grdllqkll~cnp~qrisaeaalq  282 (292)
T KOG0662|consen  247 SWSQIVPKLNSTGRDLLQKLLKCNPAQRISAEAALQ  282 (292)
T ss_pred             hHHHHhhhhcchhHHHHHHHhccCcccccCHHHHhc
Confidence            1           124667777778999999887654

>KOG1151|consensus

Probab=98.32  E-value=3.4e-07  Score=52.57  Aligned_cols=80  Identities=21%  Similarity=0.489  Sum_probs=48.8

Q ss_pred             ccCcchhcc----CCCCchhhHHHHHHHHHHHHhcCCCCCCCCC-HHHHHH--HHHcCCCCCCC------CCChHHHHHH
Q psy8478           4 WMAPECLVD----GLFSSQSDVWAFGVLLWEIMSLGQQPYPART-NVDVLH--YVRGGGRLNRP------ANCSHLIRSR   70 (88)
Q Consensus         4 ~~~pe~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~i~~~~~~~~~------~~~~~~~~~~   70 (88)
                      |++||++.-    .+.+.++|+|++|+++|.+++ |..||.... ...+++  .|.......+|      ..+..+|+.|
T Consensus       646 YLPPEcFvVgkePPKIsnKVDVWSvGVIFyQClY-GrKPFGhnqsQQdILqeNTIlkAtEVqFP~KPvVsseAkaFIRRC  724 (775)
T KOG1151|consen  646 YLPPECFVVGKEPPKISNKVDVWSVGVIFYQCLY-GRKPFGHNQSQQDILQENTILKATEVQFPPKPVVSSEAKAFIRRC  724 (775)
T ss_pred             ecCcceeecCCCCCccccceeeEeeehhhhhhhc-cCCCCCCchhHHHHHhhhchhcceeccCCCCCccCHHHHHHHHHH
Confidence            578888763    357789999999999999998 999996543 333333  23322222222      2345566666


Q ss_pred             HhhCcccCCChhhh
Q psy8478          71 NRLTENKAPSAVSK   84 (88)
Q Consensus        71 l~~~~~~rp~~~~~   84 (88)
                      |.-.-+.|.+..++
T Consensus       725 LaYRKeDR~DV~qL  738 (775)
T KOG1151|consen  725 LAYRKEDRIDVQQL  738 (775)
T ss_pred             HHhhhhhhhhHHHH
Confidence            55544555544443

>KOG0668|consensus

Probab=98.31  E-value=7.4e-06  Score=43.63  Aligned_cols=80  Identities=20%  Similarity=0.284  Sum_probs=51.9

Q ss_pred             cCcchhcc-CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHc------------CC----------------
Q psy8478           5 MAPECLVD-GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRG------------GG----------------   55 (88)
Q Consensus         5 ~~pe~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~------------~~----------------   55 (88)
                      -.||.+-. ..|.-+.|+||+||.+..++....+.|++.+..+.+-+|..            .+                
T Consensus       199 KGPELLVdy~~YDYSLD~WS~GcmlA~miFrkepFFhG~dN~DQLVkIakVLGt~el~~Yl~KY~i~Ldp~~~~i~~~~~  278 (338)
T KOG0668|consen  199 KGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVKIAKVLGTDELYAYLNKYQIDLDPQFEDILGRHS  278 (338)
T ss_pred             CCchheeechhccccHHHHHHHHHHHHHHhccCcccCCCCCHHHHHHHHHHhChHHHHHHHHHHccCCChhHhhHhhccc
Confidence            45665554 35666799999999999998845555566555443332211            00                


Q ss_pred             CC------------CCCCCChHHHHHHHhhCcccCCChhhh
Q psy8478          56 RL------------NRPANCSHLIRSRNRLTENKAPSAVSK   84 (88)
Q Consensus        56 ~~------------~~~~~~~~~~~~~l~~~~~~rp~~~~~   84 (88)
                      +.            -..+++-+++.++|.-+.+.|+||.+.
T Consensus       279 rk~w~~Fi~~~n~hl~~peaiDlldklLrYDHqeRlTakEa  319 (338)
T KOG0668|consen  279 RKPWSRFINSENQHLVSPEAIDLLDKLLRYDHQERLTAKEA  319 (338)
T ss_pred             cccHHHhCCccccccCChHHHHHHHHHHhhccccccchHHH
Confidence            00            012345578889999999999999875

>KOG0590|consensus

Probab=98.29  E-value=8.8e-08  Score=56.55  Aligned_cols=83  Identities=19%  Similarity=0.304  Sum_probs=59.8

Q ss_pred             cccCcchhccCCCCc-hhhHHHHHHHHHHHHhcCCCCCCCCCHHHHH--HH-------HHcCCC---CCCCCCChHHHHH
Q psy8478           3 RWMAPECLVDGLFSS-QSDVWAFGVLLWEIMSLGQQPYPARTNVDVL--HY-------VRGGGR---LNRPANCSHLIRS   69 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-------i~~~~~---~~~~~~~~~~~~~   69 (88)
                      -|+|||.+....|.+ ..|+|+.|++...+.. ++.|+......+..  +.       +..++.   ...|......++.
T Consensus       489 pY~apE~~~~~~ydpr~vDiwS~~ii~~~m~~-~~~~Wk~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~  567 (601)
T KOG0590|consen  489 PYLAPEVLTGKEYDPRAVDVWSCGIIYICMIL-GRFPWKVAKKSDNSFKTNNYSDQRNIFEGPNRLLSLLPRETRIIIYR  567 (601)
T ss_pred             cCcCcccccccccCcchhhhhhccceEEEEec-CCCccccccccccchhhhccccccccccChHHHHHhchhhHHHHHHH
Confidence            378999998888865 7999999999998888 77777533222111  11       111110   1356778899999


Q ss_pred             HHhhCcccCCChhhhhh
Q psy8478          70 RNRLTENKAPSAVSKKR   86 (88)
Q Consensus        70 ~l~~~~~~rp~~~~~~~   86 (88)
                      +|+.+|.+|.+++++++
T Consensus       568 ~l~~~P~~R~ti~~i~~  584 (601)
T KOG0590|consen  568 MLQLDPTKRITIEQILN  584 (601)
T ss_pred             HccCChhheecHHHHhh
Confidence            99999999999999875

>KOG4250|consensus

Probab=98.24  E-value=6.6e-07  Score=53.19  Aligned_cols=38  Identities=29%  Similarity=0.740  Sum_probs=33.9

Q ss_pred             CcccCcchhc-cCCCCchhhHHHHHHHHHHHHhcCCCCCC
Q psy8478           2 TRWMAPECLV-DGLFSSQSDVWAFGVLLWEIMSLGQQPYP   40 (88)
Q Consensus         2 ~~~~~pe~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   40 (88)
                      ..|++|+... ...|+..+|.||+|+++|++.+ |..||-
T Consensus       187 ~~YLhPel~E~q~~y~~tVDLWS~GvtlY~caT-G~lPF~  225 (732)
T KOG4250|consen  187 EEYLHPELYERQKKYTATVDLWSFGVTLYECAT-GELPFI  225 (732)
T ss_pred             hhhcChHHHhhccCcCceeehhhhhhHHHHHhc-cCCCCC
Confidence            4689999888 4788999999999999999999 999885

>KOG2052|consensus

Probab=98.23  E-value=2.7e-06  Score=48.60  Aligned_cols=80  Identities=30%  Similarity=0.429  Sum_probs=45.5

Q ss_pred             CcccCcchhccC----CCC--chhhHHHHHHHHHHHHhc---------CCCCCCCCC-----HHHHHHHH-HcCCCCCCC
Q psy8478           2 TRWMAPECLVDG----LFS--SQSDVWAFGVLLWEIMSL---------GQQPYPART-----NVDVLHYV-RGGGRLNRP   60 (88)
Q Consensus         2 ~~~~~pe~~~~~----~~~--~~~~~~~~~~~~~~~~~~---------~~~~~~~~~-----~~~~~~~i-~~~~~~~~~   60 (88)
                      -+|||||++...    .|.  ..+|+|++|.++||+..+         ...||....     .+++..-+ .+..++..|
T Consensus       384 KRYMAPEvLdetin~~~Fesyk~ADIYafgLVlWEiarRc~~ggi~eey~~Pyyd~Vp~DPs~eeMrkVVCv~~~RP~ip  463 (513)
T KOG2052|consen  384 KRYMAPEVLDETINMKHFESYKRADIYAFGLVLWEIARRCESGGIVEEYQLPYYDVVPSDPSFEEMRKVVCVQKLRPNIP  463 (513)
T ss_pred             eeccChHHhhhhcChhhhhhhhHHHHHHHHHHHHHHHHHhhcCCEehhhcCCcccCCCCCCCHHHHhcceeecccCCCCC
Confidence            379999998643    122  369999999999998731         256775432     23333322 223344444


Q ss_pred             CCC-----hHHHHHHHhhCcccCCCh
Q psy8478          61 ANC-----SHLIRSRNRLTENKAPSA   81 (88)
Q Consensus        61 ~~~-----~~~~~~~l~~~~~~rp~~   81 (88)
                      ..+     -..+.+++..||..+|++
T Consensus       464 nrW~s~~~l~~m~klMkeCW~~Np~a  489 (513)
T KOG2052|consen  464 NRWKSDPALRVMAKLMKECWYANPAA  489 (513)
T ss_pred             cccccCHHHHHHHHHHHHhhcCCchh
Confidence            332     223445566666666654

>KOG1023|consensus

Probab=98.23  E-value=6.4e-06  Score=47.72  Aligned_cols=84  Identities=25%  Similarity=0.471  Sum_probs=57.4

Q ss_pred             cccCcchhccCC-------CCchhhHHHHHHHHHHHHhcCCCCCCCC----CHHHHHHHHHc-CCCCCCC---------C
Q psy8478           3 RWMAPECLVDGL-------FSSQSDVWAFGVLLWEIMSLGQQPYPAR----TNVDVLHYVRG-GGRLNRP---------A   61 (88)
Q Consensus         3 ~~~~pe~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~-~~~~~~~---------~   61 (88)
                      -|.+||.+....       .+.+.|+|++|+.+++++. ...||...    .+.++...+.. +..+..|         .
T Consensus       116 lw~aPellr~~~~~~~~~~~~~~gdiYs~~ii~~ei~~-r~~~~~~~~~~~~~~eii~~~~~~~~~~~rP~i~~~~e~~~  194 (484)
T KOG1023|consen  116 LWTAPELLRGALSQSLESALTQKGDIYSFGIIMYEILF-RSGPFDLRNLVEDPDEIILRVKKGGSNPFRPSIELLNELPP  194 (484)
T ss_pred             hccCHHHhcccccccccccccccCCeehHHHHHHHHHh-ccCccccccccCChHHHHHHHHhcCCCCcCcchhhhhhcch
Confidence            478999887531       3456999999999999998 77777642    23456666655 3322222         2


Q ss_pred             CChHHHHHHHhhCcccCCChhhhhhc
Q psy8478          62 NCSHLIRSRNRLTENKAPSAVSKKRI   87 (88)
Q Consensus        62 ~~~~~~~~~l~~~~~~rp~~~~~~~~   87 (88)
                      .....+.+|+...|.+||+++++...
T Consensus       195 ~l~~l~~~cw~e~P~~rPs~~~i~~~  220 (484)
T KOG1023|consen  195 ELLLLVARCWEEIPEKRPSIEQIRSK  220 (484)
T ss_pred             HHHHHHHHhcccChhhCccHHHHHhh
Confidence            34456677888888999999988653

>KOG3653|consensus

Probab=98.02  E-value=2.7e-05  Score=45.01  Aligned_cols=32  Identities=47%  Similarity=0.853  Sum_probs=26.0

Q ss_pred             CcccCcchhccC-CCC-----chhhHHHHHHHHHHHHh
Q psy8478           2 TRWMAPECLVDG-LFS-----SQSDVWAFGVLLWEIMS   33 (88)
Q Consensus         2 ~~~~~pe~~~~~-~~~-----~~~~~~~~~~~~~~~~~   33 (88)
                      .+|||||++-+. .+.     ...|+|++|.++|++.+
T Consensus       382 ~RYMAPEvLEgainl~d~~Afkr~DvYamgLVLWEi~S  419 (534)
T KOG3653|consen  382 RRYMAPEVLEGAINLQDRDAFKRIDVYAMGLVLWEIAS  419 (534)
T ss_pred             hhhcCHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHh
Confidence            579999998764 222     36899999999999987

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=97.93  E-value=1.1e-06  Score=47.81  Aligned_cols=62  Identities=16%  Similarity=0.326  Sum_probs=37.7

Q ss_pred             CCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHH-HHHcCCCCCCCCCChHHHHHHHhhCcccC
Q psy8478          14 LFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLH-YVRGGGRLNRPANCSHLIRSRNRLTENKA   78 (88)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~l~~~~~~r   78 (88)
                      .++.+.|.|.+|+++|.++. +..||.......... ....+.  ..|+....+|+++|..++.+|
T Consensus       226 ~~t~~~DaW~LG~~ly~lWC-~~lPf~~~~~~~~~~~~f~~C~--~~Pe~v~~LI~~lL~~~~~~R  288 (288)
T PF14531_consen  226 PYTFATDAWQLGITLYSLWC-GRLPFGLSSPEADPEWDFSRCR--DMPEPVQFLIRGLLQRNPEDR  288 (288)
T ss_dssp             EE-HHHHHHHHHHHHHHHHH-SS-STCCCGGGSTSGGGGTTSS-----HHHHHHHHHHT-SSGGGS
T ss_pred             eeeeccCHHHHHHHHHHHHH-ccCCCCCCCccccccccchhcC--CcCHHHHHHHHHHccCCcccC
Confidence            46678899999999999999 999997543321111 111221  445666677778888877765

>KOG4158|consensus

Probab=97.82  E-value=5.4e-05  Score=43.42  Aligned_cols=78  Identities=22%  Similarity=0.257  Sum_probs=49.6

Q ss_pred             ccCcchhccC--C----CCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHH-HHcCCCCCCCCCCh----HHHHHHHh
Q psy8478           4 WMAPECLVDG--L----FSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHY-VRGGGRLNRPANCS----HLIRSRNR   72 (88)
Q Consensus         4 ~~~pe~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~----~~~~~~l~   72 (88)
                      .|+||+...-  +    --.++|.|..|.+.|+++. ...||++.....+... ..+..-+..|+.++    .+++.+|.
T Consensus       417 lmAPEi~ta~PGp~avvny~kAD~WA~GalaYEIfg-~~NPFY~rGem~L~~r~Yqe~qLPalp~~vpp~~rqlV~~lL~  495 (598)
T KOG4158|consen  417 LMAPEIATAVPGPNAVVNYEKADTWAAGALAYEIFG-RSNPFYKRGEMLLDTRTYQESQLPALPSRVPPVARQLVFDLLK  495 (598)
T ss_pred             ecchhhhhcCCCCceeeccchhhhhhhhhhHHHHhc-cCCcccccchheechhhhhhhhCCCCcccCChHHHHHHHHHhc
Confidence            4788876521  1    1248999999999999888 7778876332211111 22233344455554    56667888


Q ss_pred             hCcccCCChh
Q psy8478          73 LTENKAPSAV   82 (88)
Q Consensus        73 ~~~~~rp~~~   82 (88)
                      .+++||++..
T Consensus       496 r~pskRvsp~  505 (598)
T KOG4158|consen  496 RDPSKRVSPN  505 (598)
T ss_pred             CCccccCCcc
Confidence            9999999854

>KOG1152|consensus

Probab=97.67  E-value=7.8e-06  Score=48.39  Aligned_cols=39  Identities=33%  Similarity=0.708  Sum_probs=33.4

Q ss_pred             CcccCcchhccCCCC-chhhHHHHHHHHHHHHhcCCCCCCC
Q psy8478           2 TRWMAPECLVDGLFS-SQSDVWAFGVLLWEIMSLGQQPYPA   41 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~   41 (88)
                      +.|.|||.+.+.+|. ..+|+|++|+++|.+.. ...||+.
T Consensus       732 v~~aapevl~g~~y~gk~qdiwalgillytivy-kenpyyn  771 (772)
T KOG1152|consen  732 VDYAAPEVLGGEKYLGKPQDIWALGILLYTIVY-KENPYYN  771 (772)
T ss_pred             ccccchhhhCCCccCCCcchhhhhhheeeEEEe-ccCCCcC
Confidence            568999999988884 57999999999999888 8888763

>KOG0606|consensus

Probab=97.67  E-value=0.00011  Score=46.38  Aligned_cols=80  Identities=23%  Similarity=0.362  Sum_probs=60.0

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC--C----CCCCChHHHHHHHhhCc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRL--N----RPANCSHLIRSRNRLTE   75 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~----~~~~~~~~~~~~l~~~~   75 (88)
                      +.|.+||...+......+|+|+.|+.+++.+. |.+||....+.+....|.....+  .    ......+.+..++...+
T Consensus       999 ~~~laPe~~lg~~hgs~ad~~~~g~~l~e~l~-g~pp~na~tpq~~f~ni~~~~~~~p~g~~~~s~~aq~~~~~ll~~~~ 1077 (1205)
T KOG0606|consen  999 PDYLAPEILLGRRHGSAADWWSSGVCLFEVLT-GIPPFNAETPQQIFENILNRDIPWPEGPEEGSYEAQDLINRLLTEEP 1077 (1205)
T ss_pred             CcccCCcccccccCCCcchhhhhhhhhhhhhc-CCCCCCCcchhhhhhccccCCCCCCCCccccChhhhhhhhhhhccCc
Confidence            56889999998888889999999999999999 99999988888888777544211  1    12234455555666667


Q ss_pred             ccCCChh
Q psy8478          76 NKAPSAV   82 (88)
Q Consensus        76 ~~rp~~~   82 (88)
                      .+|..+.
T Consensus      1078 ~qr~~a~ 1084 (1205)
T KOG0606|consen 1078 TQRLGAK 1084 (1205)
T ss_pred             hhccCcc
Confidence            7776654

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=97.06  E-value=0.015  Score=31.42  Aligned_cols=82  Identities=24%  Similarity=0.422  Sum_probs=55.2

Q ss_pred             CcccCcchhcc---CCCCchhhHHHHHHHHHHHHhcCCCCCCCCC----HHHHHHHHHcCCCC----CCCC--------C
Q psy8478           2 TRWMAPECLVD---GLFSSQSDVWAFGVLLWEIMSLGQQPYPART----NVDVLHYVRGGGRL----NRPA--------N   62 (88)
Q Consensus         2 ~~~~~pe~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~----~~~~--------~   62 (88)
                      ..|++||.+..   ..+....|+|++|+..+..+. +..|+....    .......+......    ....        .
T Consensus       172 ~~~~~pe~~~~~~~~~~~~~~D~~s~g~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (384)
T COG0515         172 PGYMAPEVLLGLSLAYASSSSDIWSLGITLYELLT-GLPPFEGEKNSSATSQTLKIILELPTPSLASPLSPSNPELISKA  250 (384)
T ss_pred             cccCCHHHhcCCCCCCCCchHhHHHHHHHHHHHHh-CCCCCCCCCccccHHHHHHHHHhcCCcccccccCccccchhhHH
Confidence            46889998876   467778999999999999888 888876554    24445544433211    1122        3


Q ss_pred             ChHHHHHHHhhCcccCCChhhh
Q psy8478          63 CSHLIRSRNRLTENKAPSAVSK   84 (88)
Q Consensus        63 ~~~~~~~~l~~~~~~rp~~~~~   84 (88)
                      ..+.+..++..++..|.+....
T Consensus       251 ~~~~~~~~~~~~~~~r~~~~~~  272 (384)
T COG0515         251 ASDLLKKLLAKDPKNRLSSSSD  272 (384)
T ss_pred             HHHHHHHHHhcCchhcCCHHHH
Confidence            4566777777778888776554

>KOG1167|consensus

Probab=96.32  E-value=0.00079  Score=38.51  Aligned_cols=39  Identities=28%  Similarity=0.553  Sum_probs=31.0

Q ss_pred             CCcccCcchhccC-CCCchhhHHHHHHHHHHHHhcCCCCCC
Q psy8478           1 MTRWMAPECLVDG-LFSSQSDVWAFGVLLWEIMSLGQQPYP   40 (88)
Q Consensus         1 ~~~~~~pe~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   40 (88)
                      ++.|.+||++... ..+.+.|+|+.|+++..+++ +..||.
T Consensus       240 T~GfRaPEvL~k~~~QttaiDiws~GVI~Lslls-~~~PFf  279 (418)
T KOG1167|consen  240 TPGFRAPEVLFRCPRQTTAIDIWSAGVILLSLLS-RRYPFF  279 (418)
T ss_pred             CCCCCchHHHhhccCcCCccceeeccceeehhhc-cccccc
Confidence            3568899988753 45678999999999999888 777774

>KOG1345|consensus

Probab=95.41  E-value=0.0011  Score=36.58  Aligned_cols=26  Identities=23%  Similarity=0.860  Sum_probs=22.7

Q ss_pred             CCchhhHHHHHHHHHHHHhcCCCCCCC
Q psy8478          15 FSSQSDVWAFGVLLWEIMSLGQQPYPA   41 (88)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~   41 (88)
                      ..+..|+|.+|++++.+++ |.+|++.
T Consensus       202 ~~ps~D~WqfGIi~f~clt-G~~PWQk  227 (378)
T KOG1345|consen  202 VNPSTDIWQFGIIFFYCLT-GKFPWQK  227 (378)
T ss_pred             ecccccchheeeeeeeeec-CCCcchh
Confidence            3567899999999999999 9999973

>KOG2137|consensus

Probab=95.16  E-value=0.0012  Score=40.10  Aligned_cols=84  Identities=20%  Similarity=0.202  Sum_probs=54.4

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHH-HHH------HHcCCCCCCCCCChHHHHHHHhhCc
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDV-LHY------VRGGGRLNRPANCSHLIRSRNRLTE   75 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------i~~~~~~~~~~~~~~~~~~~l~~~~   75 (88)
                      -|.+||.+.........|++++|++.+.+...|+.-+.+...... ...      -..++....|.+..+.+.+++..+.
T Consensus       174 ~f~apE~~~~~~~~~~sd~fSlG~li~~i~~~gk~i~~a~~~~~~~~~~~~~~~~~~~~~s~~~p~el~~~l~k~l~~~~  253 (700)
T KOG2137|consen  174 NFLAPEYLLGTTNTPASDVFSLGVLIYTIYNGGKSIIAANGGLLSYSFSRNLLNAGAFGYSNNLPSELRESLKKLLNGDS  253 (700)
T ss_pred             ccccchhhccccccccccceeeeeEEEEEecCCcchhhccCCcchhhhhhcccccccccccccCcHHHHHHHHHHhcCCc
Confidence            478899988766667899999999988766535544433221111 000      0112233456777777888899999


Q ss_pred             ccCCChhhhhh
Q psy8478          76 NKAPSAVSKKR   86 (88)
Q Consensus        76 ~~rp~~~~~~~   86 (88)
                      ..||++..+..
T Consensus       254 ~~rp~~~~l~~  264 (700)
T KOG2137|consen  254 AVRPTLDLLLS  264 (700)
T ss_pred             ccCcchhhhhc
Confidence            99997776654

>KOG1266|consensus

Probab=94.78  E-value=0.035  Score=31.81  Aligned_cols=79  Identities=18%  Similarity=0.073  Sum_probs=42.8

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCC-CCCCCC---HHHHHHHHHcCCCCCCCCCChHHHHHHHhhCcccC
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQ-PYPART---NVDVLHYVRGGGRLNRPANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~r   78 (88)
                      .|.+|+.-.-.......|++++|.-..++.. +.. +-.+..   ..+.......+......   ...+.+|++..|+.|
T Consensus       247 g~~a~~sg~~tn~~~a~dIy~fgmcAlemai-lEiq~tnseS~~~~ee~ia~~i~~len~lq---r~~i~kcl~~eP~~r  322 (458)
T KOG1266|consen  247 GFSAPESGTTTNTTGASDIYKFGMCALEMAI-LEIQSTNSESKVEVEENIANVIIGLENGLQ---RGSITKCLEGEPNGR  322 (458)
T ss_pred             ccccCCcCcccccccchhhhhhhHHHHHHHH-heeccCCCcceeehhhhhhhheeeccCccc---cCcCcccccCCCCCC
Confidence            3445554433345567899999977777665 432 222221   12222222222111111   234567889999999


Q ss_pred             CChhhhh
Q psy8478          79 PSAVSKK   85 (88)
Q Consensus        79 p~~~~~~   85 (88)
                      |+|+...
T Consensus       323 p~ar~ll  329 (458)
T KOG1266|consen  323 PDARLLL  329 (458)
T ss_pred             cchhhhh
Confidence            9998753

>KOG1164|consensus

Probab=93.22  E-value=0.68  Score=26.08  Aligned_cols=41  Identities=17%  Similarity=0.241  Sum_probs=30.3

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPART   43 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   43 (88)
                      .+|+++....+...+...|+|++.-.+.++.. |..|+.+..
T Consensus       201 ~ry~S~~~H~~~e~~r~DDles~~Y~l~el~~-g~LPW~~~~  241 (322)
T KOG1164|consen  201 LRYASINVHLGIEQGRRDDLESLFYMLLELLK-GSLPWEALE  241 (322)
T ss_pred             cccccHHHhCCCccCCchhhhhHHHHHHHHhc-CCCCCcccc
Confidence            34555555555567788999999999999888 878886544

>KOG0590|consensus

Probab=91.84  E-value=0.021  Score=34.80  Aligned_cols=84  Identities=21%  Similarity=0.332  Sum_probs=50.8

Q ss_pred             CcccCcchhccC-CCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHH--HHHHcCCC---CC---CCCCChHHHHHHHh
Q psy8478           2 TRWMAPECLVDG-LFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVL--HYVRGGGR---LN---RPANCSHLIRSRNR   72 (88)
Q Consensus         2 ~~~~~pe~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~---~~---~~~~~~~~~~~~l~   72 (88)
                      +-|++||...+. ......|+|+.|+++..+.. |..|..........  ..+.....   .+   ........+.+++.
T Consensus       193 ~~y~a~E~~~~~~~~~~~~d~~S~g~~l~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~k~l~  271 (601)
T KOG0590|consen  193 PPYGAPEHLSGKAYRGPSVDVWSLGIVLSAMLT-GELPWDFPSRKDGRYSSWKSNKGRFTQLPWNSISDQAHDLLHKILK  271 (601)
T ss_pred             CCCCCcccccchhhcCCCccccccccccccccc-CCCCccccccccccceeecccccccccCccccCChhhhhccccccc
Confidence            458889988764 34568999999999999888 88777543322111  11111111   11   12233445566666


Q ss_pred             hCcccCCChhhhhh
Q psy8478          73 LTENKAPSAVSKKR   86 (88)
Q Consensus        73 ~~~~~rp~~~~~~~   86 (88)
                      .++..|.+.+++..
T Consensus       272 ~~~~~r~s~~~~~~  285 (601)
T KOG0590|consen  272 ENPSNRLSIEELKL  285 (601)
T ss_pred             CCchhccccccccc
Confidence            77888888877653

>KOG1167|consensus

Probab=82.42  E-value=0.62  Score=27.44  Aligned_cols=25  Identities=16%  Similarity=0.042  Sum_probs=21.3

Q ss_pred             CChHHHHHHHhhCcccCCChhhhhh
Q psy8478          62 NCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        62 ~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                      .+-+++.++++.+|.+|.+|++.++
T Consensus       356 ~~~dlLdk~le~np~kRitAEeALk  380 (418)
T KOG1167|consen  356 LLLDLLDKCLELNPQKRITAEDALK  380 (418)
T ss_pred             HHHHHHHHHccCChhhcccHHHHhc
Confidence            4557888999999999999998765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	88
4fob_A	353	Crystal Structure Of Human Anaplastic Lymphoma Kina		9e-19
3aox_A	344	X-Ray Crystal Structure Of Human Anaplastic Lymphom		1e-18
4dce_A	333	Crystal Structure Of Human Anaplastic Lymphoma Kina		1e-18
3l9p_A	367	Crystal Structure Of The Anaplastic Lymphoma Kinase		1e-18
4fnw_A	327	Crystal Structure Of The Apo F1174l Anaplastic Lymp		1e-18
4fnz_A	327	Crystal Structure Of Human Anaplastic Lymphoma Kina		1e-18
4fnx_A	327	Crystal Structure Of The Apo R1275q Anaplastic Lymp		1e-18
3lct_A	344	Crystal Structure Of The Anaplastic Lymphoma Kinase		1e-18
2yjs_A	342	Structure Of C1156y Mutant Anaplastic Lymphoma Kina		1e-18
2yhv_A	342	Structure Of L1196m Mutant Anaplastic Lymphoma Kina		1e-18
2yjr_A	342	Structure Of F1174l Mutant Anaplastic Lymphoma Kina		1e-18
2yfx_A	327	Structure Of L1196m Mutant Anaplastic Lymphoma Kina		1e-18
2xp2_A	327	Structure Of The Human Anaplastic Lymphoma Kinase I		1e-18
2xb7_A	315	Structure Of Human Anaplastic Lymphoma Kinase In Co		2e-18
2z8c_A	303	Phosphorylated Insulin Receptor Tyrosine Kinase In		6e-18
1i44_A	306	Crystallographic Studies Of An Activation Loop Muta		6e-18
3eta_A	317	Kinase Domain Of Insulin Receptor Complexed With A		6e-18
1ir3_A	306	Phosphorylated Insulin Receptor Tyrosine Kinase In		6e-18
1irk_A	306	Crystal Structure Of The Tyrosine Kinase Domain Of		6e-18
1rqq_A	306	Crystal Structure Of The Insulin Receptor Kinase In		6e-18
1p14_A	306	Crystal Structure Of A Catalytic-Loop Mutant Of The		6e-18
3ekk_A	307	Insulin Receptor Kinase Complexed With An Inhibitor		7e-18
1m7n_A	322	Crystal Structure Of Unactivated Apo Insulin-Like G		7e-18
1jqh_A	308	Igf-1 Receptor Kinase Domain Length = 308		7e-18
3o23_A	305	Human Unphosphorylated Igf1-R Kinase Domain In Comp		7e-18
2oj9_A	307	Structure Of Igf-1r Kinase Domain Complexed With A		7e-18
1p4o_A	322	Structure Of Apo Unactivated Igf-1r Kinase Domain A		7e-18
3d94_A	301	Crystal Structure Of The Insulin-Like Growth Factor		7e-18
3i81_A	315	Crystal Structure Of Insulin-Like Growth Factor 1 R		8e-18
3lw0_A	304	Igf-1rk In Complex With Ligand Msc1609119a-1 Length		8e-18
2zm3_A	308	Complex Structure Of Insulin-Like Growth Factor Rec		8e-18
1k3a_A	299	Structure Of The Insulin-Like Growth Factor 1 Recep		8e-18
3qqu_A	301	Cocrystal Structure Of Unphosphorylated Igf With Py		9e-18
3lvp_A	336	Crystal Structure Of Bisphosphorylated Igf1-R Kinas		9e-18
1gjo_A	316	The Fgfr2 Tyrosine Kinase Domain Length = 316		3e-16
2pz5_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		3e-16
2pwl_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		3e-16
2pzp_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		3e-16
3cly_A	334	Crystal Structure Of Fgf Receptor 2 (Fgfr2) Kinase		3e-16
2q0b_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		3e-16
2py3_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		3e-16
2pvy_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		3e-16
3ri1_A	313	Crystal Structure Of The Catalytic Domain Of Fgfr2		3e-16
3b2t_A	311	Structure Of Phosphotransferase Length = 311		3e-16
2pzr_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		3e-16
2pvf_A	334	Crystal Structure Of Tyrosine Phosphorylated Activa		3e-16
2psq_A	370	Crystal Structure Of Unphosphorylated Unactivated W		5e-16
3kxx_A	317	Structure Of The Mutant Fibroblast Growth Factor Re		9e-16
3js2_A	317	Crystal Structure Of Minimal Kinase Domain Of Fibro		9e-16
1fgk_A	310	Crystal Structure Of The Tyrosine Kinase Domain Of		9e-16
3rhx_B	306	Crystal Structure Of The Catalytic Domain Of Fgfr1		9e-16
3gqi_A	326	Crystal Structure Of Activated Receptor Tyrosine Ki		9e-16
3tt0_A	382	Co-Structure Of Fibroblast Growth Factor Receptor 1		1e-15
4f63_A	309	Crystal Structure Of Human Fibroblast Growth Factor		1e-15
3gql_A	326	Crystal Structure Of Activated Receptor Tyrosine Ki		1e-15
3c4f_A	302	Fgfr Tyrosine Kinase Domain In Complex With 3-(3- M		1e-15
2ivt_A	314	Crystal Structure Of Phosphorylated Ret Tyrosine Ki		9e-15
2ivv_A	314	Crystal Structure Of Phosphorylated Ret Tyrosine Ki		9e-15
2ivs_A	314	Crystal Structure Of Non-Phosphorylated Ret Tyrosin		9e-15
3qup_A	323	Inhibitor Bound Structure Of The Kinase Domain Of T		1e-14
3a4o_X	286	Lyn Kinase Domain Length = 286		3e-14
1luf_A	343	Crystal Structure Of The Musk Tyrosine Kinase: Insi		3e-14
2zv7_A	279	Lyn Tyrosine Kinase Domain, Apo Form Length = 279		7e-14
3cd3_A	377	Crystal Structure Of Phosphorylated Human Feline Sa		1e-13
3bkb_A	377	Crystal Structure Of Human Feline Sarcoma Viral Onc		1e-13
3pix_A	274	Crystal Structure Of Btk Kinase Domain Complexed Wi		1e-13
3ocs_A	271	Crystal Structure Of Bruton's Tyrosine Kinase In Co		1e-13
3p08_A	267	Crystal Structure Of The Human Btk Kinase Domain Le		1e-13
3gen_A	283	The 1.6 A Crystal Structure Of Human Bruton's Tyros		2e-13
3k54_A	283	Structures Of Human Bruton's Tyrosine Kinase In Act		2e-13
3oct_A	265	Crystal Structure Of Bruton's Tyrosine Kinase Mutan		2e-13
2og8_A	265	Crystal Structure Of Aminoquinazoline 36 Bound To L		2e-13
3mpm_A	267	Lck Complexed With A Pyrazolopyrimidine Length = 26		3e-13
3kul_B	325	Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep		3e-13
3kul_A	325	Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep		3e-13
2of2_A	271	Crystal Structure Of Furanopyrimidine 8 Bound To Lc		4e-13
2ofv_A	277	Crystal Structure Of Aminoquinazoline 1 Bound To Lc		4e-13
3lck_A	271	The Kinase Domain Of Human Lymphocyte Kinase (Lck),		4e-13
3bym_A	272	X-Ray Co-Crystal Structure Aminobenzimidazole Triaz		4e-13
3bys_A	277	Co-Crystal Structure Of Lck And Aminopyrimidine Ami		4e-13
1qpe_A	279	Structural Analysis Of The Lymphocyte-Specific Kina		4e-13
2ofu_A	273	X-Ray Crystal Structure Of 2-Aminopyrimidine Carbam		4e-13
3kmm_A	288	Structure Of Human Lck Kinase With A Small Molecule		4e-13
2pl0_A	289	Lck Bound To Imatinib Length = 289		5e-13
2zm1_A	285	Crystal Structure Of Imidazo Pyrazin 1 Bound To The		5e-13
3hng_A	360	Crystal Structure Of Vegfr1 In Complex With N-(4-ch		5e-13
3kxz_A	287	The Complex Crystal Structure Of Lck With A Probe M		5e-13
1qpd_A	279	Structural Analysis Of The Lymphocyte-specific Kina		5e-13
1k2p_A	263	Crystal Structure Of Bruton's Tyrosine Kinase Domai		5e-13
2rei_A	318	Kinase Domain Of Human Ephrin Type-a Receptor 7 (ep		1e-12
2p0c_A	313	Catalytic Domain Of The Proto-Oncogene Tyrosine-Pro		1e-12
1qcf_A	454	Crystal Structure Of Hck In Complex With A Src Fami		1e-12
3sxr_A	268	Crystal Structure Of Bmx Non-Receptor Tyrosine Kina		1e-12
2hk5_A	270	Hck Kinase In Complex With Lck Targetted Inhibitor		1e-12
1ad5_A	438	Src Family Kinase Hck-Amp-Pnp Complex Length = 438		1e-12
4gt4_A	308	Structure Of Unliganded, Inactive Ror2 Kinase Domai		1e-12
3vhk_A	368	Crystal Structure Of The Vegfr2 Kinase Domain In Co		2e-12
1y6a_A	366	Crystal Structure Of Vegfr2 In Complex With A 2-Ani		2e-12
3vid_A	356	Crystal Structure Of Human Vegfr2 Kinase Domain Wit		2e-12
3zzw_A	289	Crystal Structure Of The Kinase Domain Of Ror2 Leng		2e-12
3vhe_A	359	Crystal Structure Of Human Vegfr2 Kinase Domain Wit		2e-12
3tub_A	293	Crystal Structure Of Syk Kinase Domain With 1-(5-(6		2e-12
3vf8_A	299	Crystal Structure Of Spleen Tyrosine Kinase Syk Cat		2e-12
3vnt_A	318	Crystal Structure Of The Kinase Domain Of Human Veg		2e-12
1xba_A	291	Crystal Structure Of Apo Syk Tyrosine Kinase Domain		2e-12
4dfl_A	274	Crystal Structure Of Spleen Tyrosine Kinase Complex		2e-12
2xir_A	316	Crystal Structure Of The Vegfr2 Kinase Domain In Co		2e-12
4f4p_A	273	Syk In Complex With Ligand Lasw836 Length = 273		2e-12
3srv_B	277	Crystal Structure Of Spleen Tyrosine Kinase (Syk) I		2e-12
3d7t_A	269	Structural Basis For The Recognition Of C-Src By It		2e-12
3srv_A	277	Crystal Structure Of Spleen Tyrosine Kinase (Syk) I		2e-12
3emg_A	291	Discovery And Sar Of Novel 4-Thiazolyl-2- Phenylami		2e-12
3cjf_A	309	Crystal Structure Of Vegfr2 In Complex With A 3,4,5		2e-12
1rjb_A	344	Crystal Structure Of Flt3 Length = 344		2e-12
2r2p_A	295	Kinase Domain Of Human Ephrin Type-A Receptor 5 (Ep		2e-12
4fl3_A	635	Structural And Biophysical Characterization Of The		3e-12
4fl2_A	636	Structural And Biophysical Characterization Of The		3e-12
1k9a_A	450	Crystal Structure Analysis Of Full-Length Carboxyl-		3e-12
3d7u_A	263	Structural Basis For The Recognition Of C-Src By It		4e-12
1byg_A	278	Kinase Domain Of Human C-Terminal Src Kinase (Csk)		4e-12
1u59_A	287	Crystal Structure Of The Zap-70 Kinase Domain In Co		4e-12
2qob_A	344	Human Epha3 Kinase Domain, Base Structure Length =		4e-12
3fxx_A	371	Human Epha3 Kinase And Juxtamembrane Region Bound T		4e-12
2qoc_A	344	Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp		4e-12
2qo7_A	373	Human Epha3 Kinase And Juxtamembrane Region, Dephos		4e-12
2gsf_A	373	The Human Epha3 Receptor Tyrosine Kinase And Juxtam		4e-12
2qof_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f		5e-12
2qod_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y602f		5e-12
2y6m_A	291	Crystal Structure Of Epha4 Kinase Domain Length = 2		5e-12
2qoi_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		5e-12
3dzq_A	361	Human Epha3 Kinase Domain In Complex With Inhibitor		5e-12
2qoo_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		5e-12
2qon_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		5e-12
2qok_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		5e-12
2i1m_A	333	Cfms Tyrosine Kinase (Tie2 Kid) In Complex With An		5e-12
2xyu_A	285	Crystal Structure Of Epha4 Kinase Domain In Complex		5e-12
2hel_A	306	Crystal Structure Of A Mutant Epha4 Kinase Domain (		5e-12
2qol_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596:y		5e-12
3bea_A	333	Cfms Tyrosine Kinase (Tie2 Kid) In Complex With A P		5e-12
3gvu_A	292	The Crystal Structure Of Human Abl2 In Complex With		5e-12
2ogv_A	317	Crystal Structure Of The Autoinhibited Human C-Fms		6e-12
3lcd_A	329	Inhibitor Bound To A Dfg-In Structure Of The Kinase		6e-12
2i0v_A	335	C-Fms Tyrosine Kinase In Complex With A Quinolone I		6e-12
3ewh_A	314	Crystal Structure Of The Vegfr2 Kinase Domain In Co		6e-12
2p2h_A	314	Crystal Structure Of The Vegfr2 Kinase Domain In Co		6e-12
2p2i_A	314	Crystal Structure Of The Vegfr2 Kinase Domain In Co		6e-12
1r0p_A	312	Crystal Structure Of The Tyrosine Kinase Domain Of		6e-12
3u6j_A	314	Crystal Structure Of The Vegfr2 Kinase Domain In Co		6e-12
3q6w_A	307	Structure Of Dually-phosphorylated Met Receptor Kin		6e-12
3f66_A	298	Human C-Met Kinase In Complex With Quinoxaline Inhi		6e-12
4gg5_A	319	Crystal Structure Of Cmet In Complex With Novel Inh		6e-12
3q6u_A	308	Structure Of The Apo Met Receptor Kinase In The Dua		6e-12
2wgj_A	306	X-Ray Structure Of Pf-02341066 Bound To The Kinase		6e-12
3dkg_A	317	Sgx Clone 5698a109kfg1h1 Length = 317		6e-12
2wd1_A	292	Human C-Met Kinase In Complex With Azaindole Inhibi		6e-12
2rfn_A	310	X-ray Structure Of C-met With Inhibitor. Length = 3		6e-12
3cth_A	314	Crystal Structure Of The Tyrosine Kinase Domain Of		6e-12
2ozo_A	613	Autoinhibited Intact Human Zap-70 Length = 613		6e-12
3dkc_A	317	Sgx Clone 5698a65kfg1h1 Length = 317		6e-12
3lq8_A	302	Structure Of The Kinase Domain Of C-Met Bound To Xl		7e-12
3a4p_A	319	Human C-Met Kinase Domain Complexed With 6-Benzylox		7e-12
3i5n_A	309	Crystal Structure Of C-Met With Triazolopyridazine		7e-12
3lco_A	324	Inhibitor Bound To A Dfg-Out Structure Of The Kinas		7e-12
3qti_A	314	C-Met Kinase In Complex With Nvp-Bvu972 Length = 31		7e-12
1ywn_A	316	Vegfr2 In Complex With A Novel 4-amino-furo[2,3-d]p		7e-12
3c7q_A	316	Structure Of Vegfr2 Kinase Domain In Complex With B		7e-12
4agc_A	353	Crystal Structure Of Vegfr2 (Juxtamembrane And Kina		7e-12
1vr2_A	316	Human Vascular Endothelial Growth Factor Receptor 2		7e-12
3c1x_A	373	Crystal Structure Of The Tyrosine Kinase Domain Of		7e-12
2g15_A	318	Structural Characterization Of Autoinhibited C-Met		7e-12
3cjg_A	309	Crystal Structure Of Vegfr2 In Complex With A 3,4,5		7e-12
2oh4_A	316	Crystal Structure Of Vegfr2 With A Benzimidazole-Ur		7e-12
3dk3_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		8e-12
1mqb_A	333	Crystal Structure Of Ephrin A2 (Epha2) Receptor Pro		8e-12
3dk6_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		8e-12
3dk7_A	277	Crystal Structure Of Mutant Abl Kinase Domain In Co		9e-12
1fvr_A	327	Tie2 Kinase Domain Length = 327		9e-12
2wqb_A	324	Structure Of The Tie2 Kinase Domain In Complex With		9e-12
2oo8_X	317	Synthesis, Structural Analysis, And Sar Studies Of		9e-12
3pyy_A	298	Discovery And Characterization Of A Cell-Permeable,		1e-11
2hiw_A	287	Crystal Structure Of Inactive Conformation Abl Kina		1e-11
3oy3_A	284	Crystal Structure Of Abl T315i Mutant Kinase Domain		1e-11
3oxz_A	284	Crystal Structure Of Abl Kinase Domain Bound With A		1e-11
2f4j_A	287	Structure Of The Kinase Domain Of An Imatinib-Resis		1e-11
3v5q_A	297	Discovery Of A Selective Trk Inhibitor With Efficac		1e-11
2z60_A	288	Crystal Structure Of The T315i Mutant Of Abl Kinase		1e-11
2e2b_A	293	Crystal Structure Of The C-Abl Kinase Domain In Com		1e-11
2g1t_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		1e-11
2v7a_A	286	Crystal Structure Of The T315i Abl Mutant In Comple		1e-11
2qoh_A	288	Crystal Structure Of Abl Kinase Bound With Ppy-a Le		1e-11
2g2f_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		1e-11
2hyy_A	273	Human Abl Kinase Domain In Complex With Imatinib (S		1e-11
2hz0_A	270	Abl Kinase Domain In Complex With Nvp-Aeg082 Length		1e-11
1fpu_A	293	Crystal Structure Of Abl Kinase Domain In Complex W		1e-11
3qrj_A	277	The Crystal Structure Of Human Abl1 Kinase Domain T		1e-11
2hzi_A	277	Abl Kinase Domain In Complex With Pd180970 Length =		1e-11
2hen_A	286	Crystal Structure Of The Ephb2 Receptor Kinase Doma		1e-11
3qri_A	277	The Crystal Structure Of Human Abl1 Kinase Domain I		1e-11
2gqg_A	278	X-Ray Crystal Structure Of Dasatinib (Bms-354825) B		1e-11
1jpa_A	312	Crystal Structure Of Unphosphorylated Ephb2 Recepto		1e-11
1opk_A	495	Structural Basis For The Auto-Inhibition Of C-Abl T		1e-11
2fo0_A	495	Organization Of The Sh3-Sh2 Unit In Active And Inac		2e-11
1opl_A	537	Structural Basis For The Auto-Inhibition Of C-Abl T		2e-11
4gt5_A	306	Crystal Structure Of The Inactive Trka Kinase Domai		3e-11
4f0i_A	300	Crystal Structure Of Apo Trka Length = 300		3e-11
4aoj_A	329	Human Trka In Complex With The Inhibitor Az-23 Leng		3e-11
2dq7_X	283	Crystal Structure Of Fyn Kinase Domain Complexed Wi		4e-11
4ebw_A	304	Structure Of Focal Adhesion Kinase Catalytic Domain		4e-11
2jkk_A	276	Focal Adhesion Kinase Catalytic Domain In Complex W		4e-11
2j0k_A	656	Crystal Structure Of A Fragment Of Focal Adhesion K		4e-11
2vwu_A	302	Ephb4 Kinase Domain Inhibitor Complex Length = 302		4e-11
4aw5_A	291	Complex Of The Ephb4 Kinase Domain With An Oxindole		4e-11
2jkm_A	276	Focal Adhesion Kinase Catalytic Domain In Complex W		4e-11
2j0l_A	276	Crystal Structure Of A The Active Conformation Of T		4e-11
2j0j_A	656	Crystal Structure Of A Fragment Of Focal Adhesion K		4e-11
2etm_A	281	Crystal Structure Of Focal Adhesion Kinase Domain C		4e-11
3pxk_A	282	Focal Adhesion Kinase Catalytic Domain In Complex W		4e-11
3bz3_A	276	Crystal Structure Analysis Of Focal Adhesion Kinase		4e-11
2j0m_B	276	Crystal Structure A Two-Chain Complex Between The F		5e-11
1mp8_A	281	Crystal Structure Of Focal Adhesion Kinase (Fak) Le		5e-11
3miy_A	266	X-Ray Crystal Structure Of Itk Complexed With Sunit		5e-11
1sm2_A	264	Crystal Structure Of The Phosphorylated Interleukin		5e-11
3v5j_A	266	Crystal Structure Of Interleukin-2 Inducible T-Cell		5e-11
3t9t_A	267	Crystal Structure Of Btk Mutant (F435t,K596r) Compl		6e-11
4hct_A	269	Crystal Structure Of Itk In Complex With Compound 5		6e-11
3qgw_A	286	Crystal Structure Of Itk Kinase Bound To An Inhibit		6e-11
4asz_A	299	Crystal Structure Of Apo Trkb Kinase Domain Length		8e-11
3fzo_A	277	Crystal Structure Of Pyk2-Apo, Proline-Rich Tyrosin		8e-11
3cc6_A	281	Crystal Structure Of Kinase Domain Of Protein Tyros		8e-11
4h1j_A	293	Crystal Structure Of Pyk2 With The Pyrazole 13a Len		1e-10
3geq_A	286	Structural Basis For The Chemical Rescue Of Src Kin		1e-10
2hwo_A	286	Crystal Structure Of Src Kinase Domain In Complex W		1e-10
3oez_A	286	Crystal Structure Of The L317i Mutant Of The Chicke		1e-10
3g6h_A	286	Src Thr338ile Inhibited In The Dfg-Asp-Out Conforma		1e-10
2qq7_A	286	Crystal Structure Of Drug Resistant Src Kinase Doma		1e-10
1yol_A	283	Crystal Structure Of Src Kinase Domain In Complex W		1e-10
3svv_A	286	Crystal Structure Of T338c C-Src Covalently Bound T		1e-10
3d7u_B	277	Structural Basis For The Recognition Of C-Src By It		1e-10
2oiq_A	286	Crystal Structure Of Chicken C-Src Kinase Domain In		1e-10
2bdf_A	279	Src Kinase In Complex With Inhibitor Ap23451 Length		1e-10
3dqw_A	286	C-Src Kinase Domain Thr338ile Mutant In Complex Wit		1e-10
1yi6_A	276	C-Term Tail Segment Of Human Tyrosine Kinase (258-5		1e-10
3u4w_A	275	Src In Complex With Dna-Templated Macrocyclic Inhib		1e-10
2h8h_A	535	Src Kinase In Complex With A Quinazoline Inhibitor		2e-10
1yoj_A	283	Crystal Structure Of Src Kinase Domain Length = 283		2e-10
1fmk_A	452	Crystal Structure Of Human Tyrosine-Protein Kinase		2e-10
1y57_A	452	Structure Of Unphosphorylated C-Src In Complex With		2e-10
1ksw_A	452	Structure Of Human C-Src Tyrosine Kinase (Thr338gly		2e-10
2ptk_A	453	Chicken Src Tyrosine Kinase Length = 453		2e-10
3bbt_B	328	Crystal Structure Of The Erbb4 Kinase In Complex Wi		7e-10
3g0e_A	336	Kit Kinase Domain In Complex With Sunitinib Length		8e-10
3pls_A	298	Ron In Complex With Ligand Amp-Pnp Length = 298		8e-10
4hzs_A	341	Crystal Structure Of Ack1 Kinase Domain With C-term		9e-10
1u46_A	291	Crystal Structure Of The Unphosphorylated Kinase Do		9e-10
4hzr_A	277	Crystal Structure Of Ack1 Kinase Domain Length = 27		9e-10
1u54_A	291	Crystal Structures Of The Phosphorylated And Unphos		9e-10
3eqp_B	276	Crystal Structure Of Ack1 With Compound T95 Length		9e-10
4id7_A	273	Ack1 Kinase In Complex With The Inhibitor Cis-3-[8-		9e-10
1t45_A	331	Structural Basis For The Autoinhibition And Sti-571		9e-10
4ewh_B	275	Co-Crystal Structure Of Ack1 With Inhibitor Length		9e-10
3g0f_A	336	Kit Kinase Domain Mutant D816h In Complex With Suni		9e-10
1t46_A	313	Structural Basis For The Autoinhibition And Sti-571		1e-09
2r4b_A	321	Erbb4 Kinase Domain Complexed With A Thienopyrimidi		1e-09
1pkg_A	329	Structure Of A C-kit Kinase Product Complex Length		1e-09
1xkk_A	352	Egfr Kinase Domain Complexed With A Quinazoline Inh		1e-09
2rfd_A	324	Crystal Structure Of The Complex Between The Egfr K		1e-09
3bel_A	315	X-Ray Structure Of Egfr In Complex With Oxime Inhib		1e-09
2gs2_A	330	Crystal Structure Of The Active Egfr Kinase Domain		1e-09
4i23_A	329	Crystal Structure Of The Wild-type Egfr Kinase Doma		1e-09
4g5j_A	330	Crystal Structure Of Egfr Kinase In Complex With Bi		1e-09
2jit_A	327	Crystal Structure Of Egfr Kinase Domain T790m Mutat		1e-09
2j5e_A	327	Crystal Structure Of Egfr Kinase Domain In Complex		1e-09
2j5f_A	327	Crystal Structure Of Egfr Kinase Domain In Complex		1e-09
4i24_A	329	Structure Of T790m Egfr Kinase Domain Co-crystalliz		1e-09
4g5p_A	330	Crystal Structure Of Egfr Kinase T790m In Complex W		1e-09
2jiu_A	328	Crystal Structure Of Egfr Kinase Domain T790m Mutat		1e-09
2itn_A	327	Crystal Structure Of Egfr Kinase Domain G719s Mutat		1e-09
3vjo_A	334	Crystal Structure Of The Wild-Type Egfr Kinase Doma		1e-09
3lzb_A	327	Egfr Kinase Domain Complexed With An Imidazo[2,1-B]		1e-09
2jiv_A	328	Crystal Structure Of Egfr Kinase Domain T790m Mutat		1e-09
4hjo_A	337	Crystal Structure Of The Inactive Egfr Tyrosine Kin		1e-09
2itt_A	327	Crystal Structure Of Egfr Kinase Domain L858r Mutat		1e-09
2gs7_A	330	Crystal Structure Of The Inactive Egfr Kinase Domai		1e-09
4i21_A	329	Crystal Structure Of L858r + T790m Egfr Kinase Doma		1e-09
3ika_A	331	Crystal Structure Of Egfr 696-1022 T790m Mutant Cov		1e-09
3w2o_A	331	Egfr Kinase Domain T790m/l858r Mutant With Tak-285		1e-09
3gop_A	361	Crystal Structure Of The Egf Receptor Juxtamembrane		2e-09
3kex_A	325	Crystal Structure Of The Catalytically Inactive Kin		2e-09
4i20_A	329	Crystal Structure Of Monomeric (v948r) Primary Onco		2e-09
3lmg_A	344	Crystal Structure Of The Erbb3 Kinase Domain In Com		2e-09
1m14_A	333	Tyrosine Kinase Domain From Epidermal Growth Factor		2e-09
4i1z_A	329	Crystal Structure Of The Monomeric (v948r) Form Of		2e-09
2eb3_A	334	Crystal Structure Of Mutated Egfr Kinase Domain (L8		2e-09
2eb2_A	334	Crystal Structure Of Mutated Egfr Kinase Domain (G7		2e-09
3ug1_A	334	Crystal Structure Of The Mutated Egfr Kinase Domain		2e-09
3pp0_A	338	Crystal Structure Of The Kinase Domain Of Human Her		4e-09
3dtc_A	271	Crystal Structure Of Mixed-Lineage Kinase Mlk1 Comp		2e-06
3ii5_A	306	The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimi		3e-06
3idp_A	300	B-Raf V600e Kinase Domain In Complex With An Aminoi		3e-06
3q96_A	282	B-Raf Kinase Domain In Complex With A Tetrahydronap		3e-06
4g9r_A	307	B-Raf V600e Kinase Domain Bound To A Type Ii Dihydr		3e-06
2fb8_A	281	Structure Of The B-Raf Kinase Domain Bound To Sb-59		3e-06
3d4q_A	307	Pyrazole-Based Inhibitors Of B-Raf Kinase Length =		3e-06
4dbn_A	284	Crystal Structure Of The Kinase Domain Of Human B-R		3e-06
1uwj_A	276	The Complex Of Mutant V599e B-raf And Bay439006 Len		3e-06
4h58_A	275	Braf In Complex With Compound 3 Length = 275		3e-06
1uwh_A	276	The Complex Of Wild Type B-Raf And Bay439006 Length		4e-06
4hvd_A	314	Jak3 Kinase Domain In Complex With 2-cyclopropyl-5h		4e-06
3lxk_A	327	Structural And Thermodynamic Characterization Of Th		4e-06
3pjc_A	315	Crystal Structure Of Jak3 Complexed With A Potent A		4e-06
1yvj_A	290	Crystal Structure Of The Jak3 Kinase Domain In Comp		5e-06
4fk3_A	292	B-Raf Kinase V600e Oncogenic Mutant In Complex With		1e-05
3ugc_A	295	Structural Basis Of Jak2 Inhibition By The Type Ii		1e-05
2w1i_A	326	Structure Determination Of Aurora Kinase In Complex		1e-05
3og7_A	289	B-Raf Kinase V600e Oncogenic Mutant In Complex With		1e-05
3c4c_A	280	B-Raf Kinase In Complex With Plx4720 Length = 280		1e-05
4aqc_A	301	Triazolopyridine-Based Inhibitor Of Janus Kinase 2		1e-05
2xa4_A	298	Inhibitors Of Jak2 Kinase Domain Length = 298		1e-05
2b7a_A	293	The Structural Basis Of Janus Kinase 2 Inhibition B		1e-05
4e4m_A	302	Jak2 Kinase (Jh1 Domain) In Complex With Compound 3		1e-05
4hge_A	300	Jak2 Kinase (Jh1 Domain) In Complex With Compound 8		1e-05
4bbe_A	298	Aminoalkylpyrimidine Inhibitor Complexes With Jak2		1e-05
4e6d_A	298	Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex W		1e-05
3tjc_A	298	Co-Crystal Structure Of Jak2 With Thienopyridine 8		1e-05
3lpb_A	295	Crystal Structure Of Jak2 Complexed With A Potent 2		1e-05
3rvg_A	303	Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido		1e-05
3q32_A	301	Structure Of Janus Kinase 2 With A Pyrrolotriazine		1e-05
3e62_A	293	Fragment Based Discovery Of Jak-2 Inhibitors Length		1e-05
3p86_A	309	Crystal Structure Of Ctr1 Kinase Domain Mutant D676		1e-05
3io7_A	313	2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Sel		1e-05
3jy9_A	311	Janus Kinase 2 Inhibitors Length = 311		1e-05
3ppz_A	309	Crystal Structure Of Ctr1 Kinase Domain In Complex		1e-05
4e20_A	290	Structure Of Mouse Tyk-2 Complexed To A 3-Aminoinda		2e-05
4e1z_A	291	Structure Of Mouse Tyk-2 Complexed To A 3-Aminoinda		2e-05
3omv_A	307	Crystal Structure Of C-Raf (Raf-1) Length = 307		2e-05
3lxn_A	318	Structural And Thermodynamic Characterization Of Th		4e-05
3nz0_A	302	Non-Phosphorylated Tyk2 Kinase With Cmp6 Length = 3		5e-05
3nyx_A	302	Non-Phosphorylated Tyk2 Jh1 Domain With Quinoline-T		5e-05
1xjd_A	345	Crystal Structure Of Pkc-Theta Complexed With Staur		7e-05
2jed_A	352	The Crystal Structure Of The Kinase Domain Of The P		7e-05
4e4l_A	302	Jak1 Kinase (Jh1 Domain) In Complex With Compound 3		1e-04
3eyg_A	290	Crystal Structures Of Jak1 And Jak2 Inhibitor Compl		1e-04
2c30_A	321	Crystal Structure Of The Human P21-Activated Kinase		4e-04

>pdb|4FOB|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In Complex With Acyliminobenzimidazole Inhibitor 1 Length = 353

Iteration: 1
 Score = 88.6 bits (218), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 33/62 (53%), Positives = 48/62 (77%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            +WM PE  ++G+F+S++D W+FGVLLWEI SLG  PYP+++N +VL +V  GGR++ P 
Sbjct: 236 VKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMDPPK 295
Query: 62  NC 63
           NC
Sbjct: 296 NC 297

>pdb|3AOX|A Chain A, X-Ray Crystal Structure Of Human Anaplastic Lymphoma Kinase In Complex With Ch5424802 Length = 344

Iteration: 1
 Score = 88.2 bits (217), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 33/62 (53%), Positives = 48/62 (77%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            +WM PE  ++G+F+S++D W+FGVLLWEI SLG  PYP+++N +VL +V  GGR++ P 
Sbjct: 226 VKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMDPPK 285
Query: 62  NC 63
           NC
Sbjct: 286 NC 287

>pdb|4DCE|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In Complex With A Piperidine-Carboxamide Inhibitor Length = 333

Iteration: 1
 Score = 88.2 bits (217), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 33/62 (53%), Positives = 48/62 (77%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            +WM PE  ++G+F+S++D W+FGVLLWEI SLG  PYP+++N +VL +V  GGR++ P 
Sbjct: 216 VKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMDPPK 275
Query: 62  NC 63
           NC
Sbjct: 276 NC 277

>pdb|3L9P|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase Catalytic Domain Length = 367

Iteration: 1
 Score = 88.2 bits (217), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 33/62 (53%), Positives = 48/62 (77%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            +WM PE  ++G+F+S++D W+FGVLLWEI SLG  PYP+++N +VL +V  GGR++ P 
Sbjct: 250 VKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMDPPK 309
Query: 62  NC 63
           NC
Sbjct: 310 NC 311

>pdb|4FNW|A Chain A, Crystal Structure Of The Apo F1174l Anaplastic Lymphoma Kinase Catalytic Domain Length = 327

Iteration: 1
 Score = 88.2 bits (217), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 33/62 (53%), Positives = 48/62 (77%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            +WM PE  ++G+F+S++D W+FGVLLWEI SLG  PYP+++N +VL +V  GGR++ P 
Sbjct: 210 VKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMDPPK 269
Query: 62  NC 63
           NC
Sbjct: 270 NC 271

>pdb|4FNZ|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In Complex With Piperidine-Carboxamide Inhibitor 2 Length = 327

Iteration: 1
 Score = 88.2 bits (217), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 33/62 (53%), Positives = 48/62 (77%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            +WM PE  ++G+F+S++D W+FGVLLWEI SLG  PYP+++N +VL +V  GGR++ P 
Sbjct: 210 VKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMDPPK 269
Query: 62  NC 63
           NC
Sbjct: 270 NC 271

>pdb|4FNX|A Chain A, Crystal Structure Of The Apo R1275q Anaplastic Lymphoma Kinase Catalytic Domain Length = 327

Iteration: 1
 Score = 88.2 bits (217), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 33/62 (53%), Positives = 48/62 (77%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            +WM PE  ++G+F+S++D W+FGVLLWEI SLG  PYP+++N +VL +V  GGR++ P 
Sbjct: 210 VKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMDPPK 269
Query: 62  NC 63
           NC
Sbjct: 270 NC 271

>pdb|3LCT|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase Catalytic Domain Length = 344

Iteration: 1
 Score = 88.2 bits (217), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 33/62 (53%), Positives = 48/62 (77%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            +WM PE  ++G+F+S++D W+FGVLLWEI SLG  PYP+++N +VL +V  GGR++ P 
Sbjct: 227 VKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMDPPK 286
Query: 62  NC 63
           NC
Sbjct: 287 NC 288

>pdb|2YJS|A Chain A, Structure Of C1156y Mutant Anaplastic Lymphoma Kinase Length = 342

Iteration: 1
 Score = 88.2 bits (217), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 33/62 (53%), Positives = 48/62 (77%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            +WM PE  ++G+F+S++D W+FGVLLWEI SLG  PYP+++N +VL +V  GGR++ P 
Sbjct: 224 VKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMDPPK 283
Query: 62  NC 63
           NC
Sbjct: 284 NC 285

>pdb|2YHV|A Chain A, Structure Of L1196m Mutant Anaplastic Lymphoma Kinase Length = 342

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 33/62 (53%), Positives = 48/62 (77%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            +WM PE  ++G+F+S++D W+FGVLLWEI SLG  PYP+++N +VL +V  GGR++ P 
Sbjct: 224 VKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMDPPK 283
Query: 62  NC 63
           NC
Sbjct: 284 NC 285

>pdb|2YJR|A Chain A, Structure Of F1174l Mutant Anaplastic Lymphoma Kinase Length = 342

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 33/62 (53%), Positives = 48/62 (77%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            +WM PE  ++G+F+S++D W+FGVLLWEI SLG  PYP+++N +VL +V  GGR++ P 
Sbjct: 224 VKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMDPPK 283
Query: 62  NC 63
           NC
Sbjct: 284 NC 285

>pdb|2YFX|A Chain A, Structure Of L1196m Mutant Anaplastic Lymphoma Kinase In Complex With Crizotinib Length = 327

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 33/62 (53%), Positives = 48/62 (77%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            +WM PE  ++G+F+S++D W+FGVLLWEI SLG  PYP+++N +VL +V  GGR++ P 
Sbjct: 209 VKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMDPPK 268
Query: 62  NC 63
           NC
Sbjct: 269 NC 270

>pdb|2XP2|A Chain A, Structure Of The Human Anaplastic Lymphoma Kinase In Complex With Crizotinib (Pf-02341066) Length = 327

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 33/62 (53%), Positives = 48/62 (77%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            +WM PE  ++G+F+S++D W+FGVLLWEI SLG  PYP+++N +VL +V  GGR++ P 
Sbjct: 209 VKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMDPPK 268
Query: 62  NC 63
           NC
Sbjct: 269 NC 270

>pdb|2XB7|A Chain A, Structure Of Human Anaplastic Lymphoma Kinase In Complex With Nvp- Tae684 Length = 315

Iteration: 1
 Score = 87.8 bits (216), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 33/62 (53%), Positives = 48/62 (77%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            +WM PE  ++G+F+S++D W+FGVLLWEI SLG  PYP+++N +VL +V  GGR++ P 
Sbjct: 201 VKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMDPPK 260
Query: 62  NC 63
           NC
Sbjct: 261 NC 262

>pdb|2Z8C|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex With (4-{[5-Carbamoyl-4-(3-Methylanilino)pyrimidin-2- Yl]amino}phenyl)acetic Acid Length = 303

Iteration: 1
 Score = 85.9 bits (211), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 36/72 (50%), Positives = 49/72 (68%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            RWMAPE L DG+F++ SD+W+FGV+LWEI SL +QPY   +N  VL +V  GG L++P 
Sbjct: 193 VRWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFVMDGGYLDQPD 252
Query: 62  NCSHLIRSRNRL 73
           NC   +    R+
Sbjct: 253 NCPERVTDLMRM 264

>pdb|1I44|A Chain A, Crystallographic Studies Of An Activation Loop Mutant Of The Insulin Receptor Tyrosine Kinase Length = 306

Iteration: 1
 Score = 85.9 bits (211), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 36/72 (50%), Positives = 49/72 (68%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            RWMAPE L DG+F++ SD+W+FGV+LWEI SL +QPY   +N  VL +V  GG L++P 
Sbjct: 196 VRWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFVMDGGYLDQPD 255
Query: 62  NCSHLIRSRNRL 73
           NC   +    R+
Sbjct: 256 NCPERVTDLMRM 267

>pdb|3ETA|A Chain A, Kinase Domain Of Insulin Receptor Complexed With A Pyrrolo Pyridine Inhibitor Length = 317

Iteration: 1
 Score = 85.9 bits (211), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 36/72 (50%), Positives = 49/72 (68%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            RWMAPE L DG+F++ SD+W+FGV+LWEI SL +QPY   +N  VL +V  GG L++P 
Sbjct: 195 VRWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFVMDGGYLDQPD 254
Query: 62  NCSHLIRSRNRL 73
           NC   +    R+
Sbjct: 255 NCPERVTDLMRM 266

>pdb|1IR3|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex With Peptide Substrate And Atp Analog Length = 306

Iteration: 1
 Score = 85.9 bits (211), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 36/72 (50%), Positives = 49/72 (68%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            RWMAPE L DG+F++ SD+W+FGV+LWEI SL +QPY   +N  VL +V  GG L++P 
Sbjct: 196 VRWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFVMDGGYLDQPD 255
Query: 62  NCSHLIRSRNRL 73
           NC   +    R+
Sbjct: 256 NCPERVTDLMRM 267

>pdb|1IRK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Human Insulin Receptor Length = 306

Iteration: 1
 Score = 85.5 bits (210), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 36/72 (50%), Positives = 49/72 (68%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            RWMAPE L DG+F++ SD+W+FGV+LWEI SL +QPY   +N  VL +V  GG L++P 
Sbjct: 196 VRWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFVMDGGYLDQPD 255
Query: 62  NCSHLIRSRNRL 73
           NC   +    R+
Sbjct: 256 NCPERVTDLMRM 267

>pdb|1RQQ|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In Complex With The Sh2 Domain Of Aps Length = 306

Iteration: 1
 Score = 85.5 bits (210), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 36/72 (50%), Positives = 49/72 (68%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            RWMAPE L DG+F++ SD+W+FGV+LWEI SL +QPY   +N  VL +V  GG L++P 
Sbjct: 196 VRWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFVMDGGYLDQPD 255
Query: 62  NCSHLIRSRNRL 73
           NC   +    R+
Sbjct: 256 NCPERVTDLMRM 267

>pdb|1P14|A Chain A, Crystal Structure Of A Catalytic-Loop Mutant Of The Insulin Receptor Tyrosine Kinase Length = 306

Iteration: 1
 Score = 85.5 bits (210), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 36/72 (50%), Positives = 49/72 (68%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            RWMAPE L DG+F++ SD+W+FGV+LWEI SL +QPY   +N  VL +V  GG L++P 
Sbjct: 196 VRWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFVMDGGYLDQPD 255
Query: 62  NCSHLIRSRNRL 73
           NC   +    R+
Sbjct: 256 NCPERVTDLMRM 267

>pdb|3EKK|A Chain A, Insulin Receptor Kinase Complexed With An Inhibitor Length = 307

Iteration: 1
 Score = 85.5 bits (210), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 36/72 (50%), Positives = 49/72 (68%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            RWMAPE L DG+F++ SD+W+FGV+LWEI SL +QPY   +N  VL +V  GG L++P 
Sbjct: 197 VRWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFVMDGGYLDQPD 256
Query: 62  NCSHLIRSRNRL 73
           NC   +    R+
Sbjct: 257 NCPERVTDLMRM 268

>pdb|1M7N|A Chain A, Crystal Structure Of Unactivated Apo Insulin-Like Growth Factor-1 Receptor Kinase Domain Length = 322

Iteration: 1
 Score = 85.5 bits (210), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 36/77 (46%), Positives = 51/77 (66%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RWM+PE L DG+F++ SDVW+FGV+LWEI +L +QPY   +N  VL +V  GG L++P N
Sbjct: 205 RWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDKPDN 264
Query: 63  CSHLIRSRNRLTENKAP 79
           C  ++    R+     P
Sbjct: 265 CPDMLFELMRMCWQYNP 281

>pdb|1JQH|A Chain A, Igf-1 Receptor Kinase Domain Length = 308

Iteration: 1
 Score = 85.5 bits (210), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 36/77 (46%), Positives = 51/77 (66%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RWM+PE L DG+F++ SDVW+FGV+LWEI +L +QPY   +N  VL +V  GG L++P N
Sbjct: 199 RWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDKPDN 258
Query: 63  CSHLIRSRNRLTENKAP 79
           C  ++    R+     P
Sbjct: 259 CPDMLFELMRMCWQYNP 275

>pdb|3O23|A Chain A, Human Unphosphorylated Igf1-R Kinase Domain In Complex With An Hydantoin Inhibitor Length = 305

Iteration: 1
 Score = 85.5 bits (210), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 36/77 (46%), Positives = 51/77 (66%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RWM+PE L DG+F++ SDVW+FGV+LWEI +L +QPY   +N  VL +V  GG L++P N
Sbjct: 196 RWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDKPDN 255
Query: 63  CSHLIRSRNRLTENKAP 79
           C  ++    R+     P
Sbjct: 256 CPDMLFELMRMCWQYNP 272

>pdb|2OJ9|A Chain A, Structure Of Igf-1r Kinase Domain Complexed With A Benzimidazole Inhibitor Length = 307

Iteration: 1
 Score = 85.5 bits (210), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 36/77 (46%), Positives = 51/77 (66%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RWM+PE L DG+F++ SDVW+FGV+LWEI +L +QPY   +N  VL +V  GG L++P N
Sbjct: 198 RWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDKPDN 257
Query: 63  CSHLIRSRNRLTENKAP 79
           C  ++    R+     P
Sbjct: 258 CPDMLFELMRMCWQYNP 274

>pdb|1P4O|A Chain A, Structure Of Apo Unactivated Igf-1r Kinase Domain At 1.5a Resolution. Length = 322

Iteration: 1
 Score = 85.5 bits (210), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 36/77 (46%), Positives = 51/77 (66%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RWM+PE L DG+F++ SDVW+FGV+LWEI +L +QPY   +N  VL +V  GG L++P N
Sbjct: 205 RWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDKPDN 264
Query: 63  CSHLIRSRNRLTENKAP 79
           C  ++    R+     P
Sbjct: 265 CPDMLFELMRMCWQYNP 281

>pdb|3D94|A Chain A, Crystal Structure Of The Insulin-Like Growth Factor-1 Receptor Kinase In Complex With Pqip Length = 301

Iteration: 1
 Score = 85.5 bits (210), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 36/77 (46%), Positives = 51/77 (66%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RWM+PE L DG+F++ SDVW+FGV+LWEI +L +QPY   +N  VL +V  GG L++P N
Sbjct: 192 RWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDKPDN 251
Query: 63  CSHLIRSRNRLTENKAP 79
           C  ++    R+     P
Sbjct: 252 CPDMLLELMRMCWQYNP 268

>pdb|3I81|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor (Igf-1r-Wt) Complex With Bms-754807 [1-(4-((5-Cyclopropyl- 1h-Pyrazol-3-Yl)amino)pyrrolo[2,1-F][1,2, 4]triazin-2-Yl)-N- (6-Fluoro-3-Pyridinyl)-2-Methyl-L-Prolinamide] Length = 315

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 36/77 (46%), Positives = 51/77 (66%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RWM+PE L DG+F++ SDVW+FGV+LWEI +L +QPY   +N  VL +V  GG L++P N
Sbjct: 198 RWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDKPDN 257
Query: 63  CSHLIRSRNRLTENKAP 79
           C  ++    R+     P
Sbjct: 258 CPDMLFELMRMCWQYNP 274

>pdb|3LW0|A Chain A, Igf-1rk In Complex With Ligand Msc1609119a-1 Length = 304

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 36/77 (46%), Positives = 51/77 (66%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RWM+PE L DG+F++ SDVW+FGV+LWEI +L +QPY   +N  VL +V  GG L++P N
Sbjct: 195 RWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDKPDN 254
Query: 63  CSHLIRSRNRLTENKAP 79
           C  ++    R+     P
Sbjct: 255 CPDMLFELMRMCWQYNP 271

>pdb|2ZM3|A Chain A, Complex Structure Of Insulin-Like Growth Factor Receptor And Isoquinolinedione Inhibitor Length = 308

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 36/77 (46%), Positives = 51/77 (66%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RWM+PE L DG+F++ SDVW+FGV+LWEI +L +QPY   +N  VL +V  GG L++P N
Sbjct: 199 RWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDKPDN 258
Query: 63  CSHLIRSRNRLTENKAP 79
           C  ++    R+     P
Sbjct: 259 CPDMLFELMRMCWQYNP 275

>pdb|1K3A|A Chain A, Structure Of The Insulin-Like Growth Factor 1 Receptor Kinase Length = 299

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 36/77 (46%), Positives = 51/77 (66%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RWM+PE L DG+F++ SDVW+FGV+LWEI +L +QPY   +N  VL +V  GG L++P N
Sbjct: 190 RWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDKPDN 249
Query: 63  CSHLIRSRNRLTENKAP 79
           C  ++    R+     P
Sbjct: 250 CPDMLLELMRMCWQYNP 266

>pdb|3QQU|A Chain A, Cocrystal Structure Of Unphosphorylated Igf With Pyrimidine 8 Length = 301

Iteration: 1
 Score = 85.1 bits (209), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 36/77 (46%), Positives = 51/77 (66%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RWM+PE L DG+F++ SDVW+FGV+LWEI +L +QPY   +N  VL +V  GG L++P N
Sbjct: 192 RWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDKPDN 251
Query: 63  CSHLIRSRNRLTENKAP 79
           C  ++    R+     P
Sbjct: 252 CPDMLFELMRMCWQYNP 268

>pdb|3LVP|A Chain A, Crystal Structure Of Bisphosphorylated Igf1-R Kinase Domain (2p) In Complex With A Bis-Azaindole Inhibitor Length = 336

Iteration: 1
 Score = 85.1 bits (209), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 35/72 (48%), Positives = 50/72 (69%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            RWM+PE L DG+F++ SDVW+FGV+LWEI +L +QPY   +N  VL +V  GG L++P 
Sbjct: 226 VRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDKPD 285
Query: 62  NCSHLIRSRNRL 73
           NC  ++    R+
Sbjct: 286 NCPDMLFELMRM 297

>pdb|1GJO|A Chain A, The Fgfr2 Tyrosine Kinase Domain Length = 316

Iteration: 1
 Score = 80.1 bits (196), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/78 (42%), Positives = 51/78 (65%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMAPE L D +++ QSDVW+FGVL+WEI +LG  PYP     ++   ++ G R+++PAN
Sbjct: 216 KWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLLKEGHRMDKPAN 275
Query: 63  CSHLIRSRNRLTENKAPS 80
           C++ +    R   +  PS
Sbjct: 276 CTNELYMMMRDCWHAVPS 293

>pdb|2PZ5|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic N549t Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 80.1 bits (196), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/78 (42%), Positives = 51/78 (65%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMAPE L D +++ QSDVW+FGVL+WEI +LG  PYP     ++   ++ G R+++PAN
Sbjct: 224 KWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLLKEGHRMDKPAN 283
Query: 63  CSHLIRSRNRLTENKAPS 80
           C++ +    R   +  PS
Sbjct: 284 CTNELYMMMRDCWHAVPS 301

>pdb|2PWL|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic N549h Mutation Responsible For Crouzon Syndrome. Length = 324

Iteration: 1
 Score = 80.1 bits (196), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/78 (42%), Positives = 51/78 (65%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMAPE L D +++ QSDVW+FGVL+WEI +LG  PYP     ++   ++ G R+++PAN
Sbjct: 224 KWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLLKEGHRMDKPAN 283
Query: 63  CSHLIRSRNRLTENKAPS 80
           C++ +    R   +  PS
Sbjct: 284 CTNELYMMMRDCWHAVPS 301

>pdb|2PZP|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic K526e Mutation Responsible For Crouzon Syndrome Length = 324

Iteration: 1
 Score = 80.1 bits (196), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/78 (42%), Positives = 51/78 (65%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMAPE L D +++ QSDVW+FGVL+WEI +LG  PYP     ++   ++ G R+++PAN
Sbjct: 224 KWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLLKEGHRMDKPAN 283
Query: 63  CSHLIRSRNRLTENKAPS 80
           C++ +    R   +  PS
Sbjct: 284 CTNELYMMMRDCWHAVPS 301

>pdb|3CLY|A Chain A, Crystal Structure Of Fgf Receptor 2 (Fgfr2) Kinase Domains Trapped In Trans-Phosphorylation Reaction Length = 334

Iteration: 1
 Score = 80.1 bits (196), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/78 (42%), Positives = 51/78 (65%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMAPE L D +++ QSDVW+FGVL+WEI +LG  PYP     ++   ++ G R+++PAN
Sbjct: 224 KWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLLKEGHRMDKPAN 283
Query: 63  CSHLIRSRNRLTENKAPS 80
           C++ +    R   +  PS
Sbjct: 284 CTNELYMMMRDCWHAVPS 301

>pdb|2Q0B|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic E565a Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 80.1 bits (196), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/78 (42%), Positives = 51/78 (65%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMAPE L D +++ QSDVW+FGVL+WEI +LG  PYP     ++   ++ G R+++PAN
Sbjct: 224 KWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLLKEGHRMDKPAN 283
Query: 63  CSHLIRSRNRLTENKAPS 80
           C++ +    R   +  PS
Sbjct: 284 CTNELYMMMRDCWHAVPS 301

>pdb|2PY3|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic E565g Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 80.1 bits (196), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/78 (42%), Positives = 51/78 (65%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMAPE L D +++ QSDVW+FGVL+WEI +LG  PYP     ++   ++ G R+++PAN
Sbjct: 224 KWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLLKEGHRMDKPAN 283
Query: 63  CSHLIRSRNRLTENKAPS 80
           C++ +    R   +  PS
Sbjct: 284 CTNELYMMMRDCWHAVPS 301

>pdb|2PVY|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic K659n Mutation Responsible For An Unclassified Craniosynostosis Syndrome. Length = 324

Iteration: 1
 Score = 80.1 bits (196), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/78 (42%), Positives = 51/78 (65%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMAPE L D +++ QSDVW+FGVL+WEI +LG  PYP     ++   ++ G R+++PAN
Sbjct: 224 KWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLLKEGHRMDKPAN 283
Query: 63  CSHLIRSRNRLTENKAPS 80
           C++ +    R   +  PS
Sbjct: 284 CTNELYMMMRDCWHAVPS 301

>pdb|3RI1|A Chain A, Crystal Structure Of The Catalytic Domain Of Fgfr2 Kinase In Complex With Arq 069 Length = 313

Iteration: 1
 Score = 80.1 bits (196), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/78 (42%), Positives = 51/78 (65%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMAPE L D +++ QSDVW+FGVL+WEI +LG  PYP     ++   ++ G R+++PAN
Sbjct: 213 KWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLLKEGHRMDKPAN 272
Query: 63  CSHLIRSRNRLTENKAPS 80
           C++ +    R   +  PS
Sbjct: 273 CTNELYMMMRDCWHAVPS 290

>pdb|3B2T|A Chain A, Structure Of Phosphotransferase Length = 311

Iteration: 1
 Score = 80.1 bits (196), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/78 (42%), Positives = 51/78 (65%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMAPE L D +++ QSDVW+FGVL+WEI +LG  PYP     ++   ++ G R+++PAN
Sbjct: 211 KWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLLKEGHRMDKPAN 270
Query: 63  CSHLIRSRNRLTENKAPS 80
           C++ +    R   +  PS
Sbjct: 271 CTNELYMMMRDCWHAVPS 288

>pdb|2PZR|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic K641r Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 79.7 bits (195), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/78 (42%), Positives = 51/78 (65%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMAPE L D +++ QSDVW+FGVL+WEI +LG  PYP     ++   ++ G R+++PAN
Sbjct: 224 KWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLLKEGHRMDKPAN 283
Query: 63  CSHLIRSRNRLTENKAPS 80
           C++ +    R   +  PS
Sbjct: 284 CTNELYMMMRDCWHAVPS 301

>pdb|2PVF|A Chain A, Crystal Structure Of Tyrosine Phosphorylated Activated Fgf Receptor 2 (Fgfr2) Kinase Domain In Complex With Atp Analog And Substrate Peptide Length = 334

Iteration: 1
 Score = 79.7 bits (195), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/78 (42%), Positives = 51/78 (65%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMAPE L D +++ QSDVW+FGVL+WEI +LG  PYP     ++   ++ G R+++PAN
Sbjct: 224 KWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLLKEGHRMDKPAN 283
Query: 63  CSHLIRSRNRLTENKAPS 80
           C++ +    R   +  PS
Sbjct: 284 CTNELYMMMRDCWHAVPS 301

>pdb|2PSQ|A Chain A, Crystal Structure Of Unphosphorylated Unactivated Wild Type Fgf Receptor 2 (Fgfr2) Kinase Domain Length = 370

Iteration: 1
 Score = 79.3 bits (194), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 33/78 (42%), Positives = 51/78 (65%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMAPE L D +++ QSDVW+FGVL+WEI +LG  PYP     ++   ++ G R+++PAN
Sbjct: 270 KWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLLKEGHRMDKPAN 329
Query: 63  CSHLIRSRNRLTENKAPS 80
           C++ +    R   +  PS
Sbjct: 330 CTNELYMMMRDCWHAVPS 347

>pdb|3KXX|A Chain A, Structure Of The Mutant Fibroblast Growth Factor Receptor 1 Length = 317

Iteration: 1
 Score = 78.6 bits (192), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 46/64 (71%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            +WMAPE L D +++ QSDVW+FGVLLWEI +LG  PYP     ++   ++ G R+++P+
Sbjct: 216 VKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPS 275
Query: 62  NCSH 65
           NC++
Sbjct: 276 NCTN 279

>pdb|3JS2|A Chain A, Crystal Structure Of Minimal Kinase Domain Of Fibroblast Growth Factor Receptor 1 In Complex With 5-(2-Thienyl) Nicotinic Acid Length = 317

Iteration: 1
 Score = 78.6 bits (192), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 46/64 (71%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            +WMAPE L D +++ QSDVW+FGVLLWEI +LG  PYP     ++   ++ G R+++P+
Sbjct: 216 VKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPS 275
Query: 62  NCSH 65
           NC++
Sbjct: 276 NCTN 279

>pdb|1FGK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of Fibroblast Growth Factor Receptor 1 Length = 310

Iteration: 1
 Score = 78.6 bits (192), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 46/64 (71%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            +WMAPE L D +++ QSDVW+FGVLLWEI +LG  PYP     ++   ++ G R+++P+
Sbjct: 209 VKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPS 268
Query: 62  NCSH 65
           NC++
Sbjct: 269 NCTN 272

>pdb|3RHX|B Chain B, Crystal Structure Of The Catalytic Domain Of Fgfr1 Kinase In Complex With Arq 069 Length = 306

Iteration: 1
 Score = 78.6 bits (192), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 46/64 (71%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            +WMAPE L D +++ QSDVW+FGVLLWEI +LG  PYP     ++   ++ G R+++P+
Sbjct: 205 VKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPS 264
Query: 62  NCSH 65
           NC++
Sbjct: 265 NCTN 268

>pdb|3GQI|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In Complex With Substrates Length = 326

Iteration: 1
 Score = 78.6 bits (192), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 46/64 (71%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            +WMAPE L D +++ QSDVW+FGVLLWEI +LG  PYP     ++   ++ G R+++P+
Sbjct: 216 VKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPS 275
Query: 62  NCSH 65
           NC++
Sbjct: 276 NCTN 279

>pdb|3TT0|A Chain A, Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase Domain With 3-(2,6-Dichloro-3, 5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Piperazin-1- Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398) Length = 382

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 46/64 (71%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            +WMAPE L D +++ QSDVW+FGVLLWEI +LG  PYP     ++   ++ G R+++P+
Sbjct: 257 VKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPS 316
Query: 62  NCSH 65
           NC++
Sbjct: 317 NCTN 320

>pdb|4F63|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor Receptor 1 Kinase Domain In Complex With Compound 1 Length = 309

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 46/64 (71%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            +WMAPE L D +++ QSDVW+FGVLLWEI +LG  PYP     ++   ++ G R+++P+
Sbjct: 208 VKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPS 267
Query: 62  NCSH 65
           NC++
Sbjct: 268 NCTN 271

>pdb|3GQL|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In Complex With Substrates Length = 326

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 46/64 (71%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            +WMAPE L D +++ QSDVW+FGVLLWEI +LG  PYP     ++   ++ G R+++P+
Sbjct: 216 VKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPS 275
Query: 62  NCSH 65
           NC++
Sbjct: 276 NCTN 279

>pdb|3C4F|A Chain A, Fgfr Tyrosine Kinase Domain In Complex With 3-(3- Methoxybenzyl)-7-Azaindole Length = 302

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 46/64 (71%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            +WMAPE L D +++ QSDVW+FGVLLWEI +LG  PYP     ++   ++ G R+++P+
Sbjct: 201 VKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPS 260
Query: 62  NCSH 65
           NC++
Sbjct: 261 NCTN 264

>pdb|2IVT|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase Domain Length = 314

Iteration: 1
 Score = 75.1 bits (183), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 44/64 (68%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            +WMA E L D ++++QSDVW+FGVLLWEI++LG  PYP      + + ++ G R+ RP 
Sbjct: 216 VKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIPPERLFNLLKTGHRMERPD 275
Query: 62  NCSH 65
           NCS 
Sbjct: 276 NCSE 279

>pdb|2IVV|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase Domain Complexed With The Inhibitor Pp1 Length = 314

Iteration: 1
 Score = 75.1 bits (183), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 44/64 (68%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            +WMA E L D ++++QSDVW+FGVLLWEI++LG  PYP      + + ++ G R+ RP 
Sbjct: 216 VKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIPPERLFNLLKTGHRMERPD 275
Query: 62  NCSH 65
           NCS 
Sbjct: 276 NCSE 279

>pdb|2IVS|A Chain A, Crystal Structure Of Non-Phosphorylated Ret Tyrosine Kinase Domain Length = 314

Iteration: 1
 Score = 75.1 bits (183), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 44/64 (68%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            +WMA E L D ++++QSDVW+FGVLLWEI++LG  PYP      + + ++ G R+ RP 
Sbjct: 216 VKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIPPERLFNLLKTGHRMERPD 275
Query: 62  NCSH 65
           NCS 
Sbjct: 276 NCSE 279

>pdb|3QUP|A Chain A, Inhibitor Bound Structure Of The Kinase Domain Of The Murine Receptor Tyrosine Kinase Tyro3 (Sky) Length = 323

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 30/62 (48%), Positives = 41/62 (66%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            +W+A E L D L++  SDVWAFGV +WEIM+ GQ PY    N ++ +Y+ GG RL +P 
Sbjct: 203 VKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIENAEIYNYLIGGNRLKQPP 262
Query: 62  NC 63
            C
Sbjct: 263 EC 264

>pdb|3A4O|X Chain X, Lyn Kinase Domain Length = 286

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/61 (49%), Positives = 43/61 (70%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE +  G F+ +SDVW+FG+LL+EI++ G+ PYP RTN DV+  +  G R+ R  N
Sbjct: 176 KWTAPEAINFGCFTIKSDVWSFGILLYEIVTYGKIPYPGRTNADVMTALSQGYRMPRVEN 235
Query: 63  C 63
           C
Sbjct: 236 C 236

>pdb|1LUF|A Chain A, Crystal Structure Of The Musk Tyrosine Kinase: Insights Into Receptor Autoregulation Length = 343

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 34/78 (43%), Positives = 49/78 (62%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RWM PE +    ++++SDVWA+GV+LWEI S G QPY    + +V++YVR G  L  P N
Sbjct: 241 RWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMAHEEVIYYVRDGNILACPEN 300
Query: 63  CSHLIRSRNRLTENKAPS 80
           C   + +  RL  +K P+
Sbjct: 301 CPLELYNLMRLCWSKLPA 318

>pdb|2ZV7|A Chain A, Lyn Tyrosine Kinase Domain, Apo Form Length = 279

Iteration: 1
 Score = 72.0 bits (175), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 29/61 (47%), Positives = 43/61 (70%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE +  G F+ +S+VW+FG+LL+EI++ G+ PYP RTN DV+  +  G R+ R  N
Sbjct: 175 KWTAPEAINFGCFTIKSNVWSFGILLYEIVTYGKIPYPGRTNADVMSALSQGYRMPRMEN 234
Query: 63  C 63
           C
Sbjct: 235 C 235

>pdb|3CD3|A Chain A, Crystal Structure Of Phosphorylated Human Feline Sarcoma Viral Oncogene Homologue (V-Fes) In Complex With Staurosporine And A Consensus Peptide Length = 377

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 32/62 (51%), Positives = 39/62 (62%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            +W APE L  G +SS+SDVW+FG+LLWE  SLG  PYP  +N     +V  GGRL  P 
Sbjct: 279 VKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLSNQQTREFVEKGGRLPCPE 338
Query: 62  NC 63
            C
Sbjct: 339 LC 340

>pdb|3BKB|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene Homologue (V- Fes) Length = 377

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 32/62 (51%), Positives = 39/62 (62%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            +W APE L  G +SS+SDVW+FG+LLWE  SLG  PYP  +N     +V  GGRL  P 
Sbjct: 279 VKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLSNQQTREFVEKGGRLPCPE 338
Query: 62  NC 63
            C
Sbjct: 339 LC 340

>pdb|3PIX|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With 2-Isopropyl-7- (4-Methyl-Piperazin-1-Yl)-4-(5-Methyl-2h-Pyrazol-3- Ylamino)-2h- Phthalazin-1-One Length = 274

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 39/58 (67%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRP 60
           RW  PE L+   FSS+SD+WAFGVL+WEI SLG+ PY   TN +   ++  G RL RP
Sbjct: 177 RWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRLYRP 234

>pdb|3OCS|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase In Complex With Inhibitor Cgi1746 Length = 271

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 39/58 (67%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRP 60
           RW  PE L+   FSS+SD+WAFGVL+WEI SLG+ PY   TN +   ++  G RL RP
Sbjct: 171 RWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRLYRP 228

>pdb|3P08|A Chain A, Crystal Structure Of The Human Btk Kinase Domain Length = 267

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 39/58 (67%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRP 60
           RW  PE L+   FSS+SD+WAFGVL+WEI SLG+ PY   TN +   ++  G RL RP
Sbjct: 170 RWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRLYRP 227

>pdb|3GEN|A Chain A, The 1.6 A Crystal Structure Of Human Bruton's Tyrosine Kinase Bound To A Pyrrolopyrimidine-Containing Compound Length = 283

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 39/58 (67%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRP 60
           RW  PE L+   FSS+SD+WAFGVL+WEI SLG+ PY   TN +   ++  G RL RP
Sbjct: 186 RWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRLYRP 243

>pdb|3K54|A Chain A, Structures Of Human Bruton's Tyrosine Kinase In Active And Inactive Conformations Suggests A Mechanism Of Activation For Tec Family Kinases Length = 283

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 39/58 (67%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRP 60
           RW  PE L+   FSS+SD+WAFGVL+WEI SLG+ PY   TN +   ++  G RL RP
Sbjct: 186 RWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRLYRP 243

>pdb|3OCT|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Mutant V555r In Complex With Dasatinib Length = 265

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 39/58 (67%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRP 60
           RW  PE L+   FSS+SD+WAFGVL+WEI SLG+ PY   TN +   ++  G RL RP
Sbjct: 171 RWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRLYRP 228

>pdb|2OG8|A Chain A, Crystal Structure Of Aminoquinazoline 36 Bound To Lck Length = 265

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/77 (41%), Positives = 47/77 (61%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE +  G F+ +SDVW+FG+LL EI++ G+ PYP  TN +V+  +  G R+ RP N
Sbjct: 170 KWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDN 229
Query: 63  CSHLIRSRNRLTENKAP 79
           C   +    RL   + P
Sbjct: 230 CPEELYQLMRLCWKERP 246

>pdb|3MPM|A Chain A, Lck Complexed With A Pyrazolopyrimidine Length = 267

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/77 (41%), Positives = 47/77 (61%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE +  G F+ +SDVW+FG+LL EI++ G+ PYP  TN +V+  +  G R+ RP N
Sbjct: 171 KWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDN 230
Query: 63  CSHLIRSRNRLTENKAP 79
           C   +    RL   + P
Sbjct: 231 CPEELYQLMRLCWKERP 247

>pdb|3KUL|B Chain B, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 42/65 (64%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RW APE +    FSS SDVW+FGV++WE+++ G++PY   TN DV+  V  G RL  P  
Sbjct: 219 RWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNMTNRDVISSVEEGYRLPAPMG 278
Query: 63  CSHLI 67
           C H +
Sbjct: 279 CPHAL 283

>pdb|3KUL|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 42/65 (64%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RW APE +    FSS SDVW+FGV++WE+++ G++PY   TN DV+  V  G RL  P  
Sbjct: 219 RWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNMTNRDVISSVEEGYRLPAPMG 278
Query: 63  CSHLI 67
           C H +
Sbjct: 279 CPHAL 283

>pdb|2OF2|A Chain A, Crystal Structure Of Furanopyrimidine 8 Bound To Lck Length = 271

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/77 (41%), Positives = 47/77 (61%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE +  G F+ +SDVW+FG+LL EI++ G+ PYP  TN +V+  +  G R+ RP N
Sbjct: 175 KWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDN 234
Query: 63  CSHLIRSRNRLTENKAP 79
           C   +    RL   + P
Sbjct: 235 CPEELYQLMRLCWKERP 251

>pdb|2OFV|A Chain A, Crystal Structure Of Aminoquinazoline 1 Bound To Lck Length = 277

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/77 (41%), Positives = 47/77 (61%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE +  G F+ +SDVW+FG+LL EI++ G+ PYP  TN +V+  +  G R+ RP N
Sbjct: 180 KWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDN 239
Query: 63  CSHLIRSRNRLTENKAP 79
           C   +    RL   + P
Sbjct: 240 CPEELYQLMRLCWKERP 256

>pdb|3LCK|A Chain A, The Kinase Domain Of Human Lymphocyte Kinase (Lck), Activated Form (Auto-Phosphorylated On Tyr394) Length = 271

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/77 (41%), Positives = 47/77 (61%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE +  G F+ +SDVW+FG+LL EI++ G+ PYP  TN +V+  +  G R+ RP N
Sbjct: 175 KWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDN 234
Query: 63  CSHLIRSRNRLTENKAP 79
           C   +    RL   + P
Sbjct: 235 CPEELYQLMRLCWKERP 251

>pdb|3BYM|A Chain A, X-Ray Co-Crystal Structure Aminobenzimidazole Triazine 1 Bound To Lck Length = 272

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/77 (41%), Positives = 47/77 (61%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE +  G F+ +SDVW+FG+LL EI++ G+ PYP  TN +V+  +  G R+ RP N
Sbjct: 176 KWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDN 235
Query: 63  CSHLIRSRNRLTENKAP 79
           C   +    RL   + P
Sbjct: 236 CPEELYQLMRLCWKERP 252

>pdb|3BYS|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b Length = 277

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/77 (41%), Positives = 47/77 (61%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE +  G F+ +SDVW+FG+LL EI++ G+ PYP  TN +V+  +  G R+ RP N
Sbjct: 181 KWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDN 240
Query: 63  CSHLIRSRNRLTENKAP 79
           C   +    RL   + P
Sbjct: 241 CPEELYQLMRLCWKERP 257

>pdb|1QPE|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck In Complex With Non-Selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/77 (41%), Positives = 47/77 (61%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE +  G F+ +SDVW+FG+LL EI++ G+ PYP  TN +V+  +  G R+ RP N
Sbjct: 175 KWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDN 234
Query: 63  CSHLIRSRNRLTENKAP 79
           C   +    RL   + P
Sbjct: 235 CPEELYQLMRLCWKERP 251

>pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43 Bound To Lck Length = 273

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/77 (41%), Positives = 47/77 (61%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE +  G F+ +SDVW+FG+LL EI++ G+ PYP  TN +V+  +  G R+ RP N
Sbjct: 177 KWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDN 236
Query: 63  CSHLIRSRNRLTENKAP 79
           C   +    RL   + P
Sbjct: 237 CPEELYQLMRLCWKERP 253

>pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule Inhibitor Length = 288

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/77 (41%), Positives = 47/77 (61%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE +  G F+ +SDVW+FG+LL EI++ G+ PYP  TN +V+  +  G R+ RP N
Sbjct: 184 KWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDN 243
Query: 63  CSHLIRSRNRLTENKAP 79
           C   +    RL   + P
Sbjct: 244 CPEELYQLMRLCWKERP 260

>pdb|2PL0|A Chain A, Lck Bound To Imatinib Length = 289

Iteration: 1
 Score = 69.3 bits (168), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 32/77 (41%), Positives = 47/77 (61%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE +  G F+ +SDVW+FG+LL EI++ G+ PYP  TN +V+  +  G R+ RP N
Sbjct: 185 KWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDN 244
Query: 63  CSHLIRSRNRLTENKAP 79
           C   +    RL   + P
Sbjct: 245 CPEELYQLMRLCWKERP 261

>pdb|2ZM1|A Chain A, Crystal Structure Of Imidazo Pyrazin 1 Bound To The Kinase Domain Of Human Lck, (Auto-Phosphorylated On Tyr394) Length = 285

Iteration: 1
 Score = 69.3 bits (168), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 32/77 (41%), Positives = 47/77 (61%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE +  G F+ +SDVW+FG+LL EI++ G+ PYP  TN +V+  +  G R+ RP N
Sbjct: 181 KWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDN 240
Query: 63  CSHLIRSRNRLTENKAP 79
           C   +    RL   + P
Sbjct: 241 CPEELYQLMRLCWKERP 257

>pdb|3HNG|A Chain A, Crystal Structure Of Vegfr1 In Complex With N-(4-chlorophenyl)-2- ((pyridin-4-ylmethyl)amino)benzamide Length = 360

Iteration: 1
 Score = 69.3 bits (168), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 41/59 (69%), Gaps = 1/59 (1%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPA-RTNVDVLHYVRGGGRLNRP 60
           +WMAPE + D ++S++SDVW++GVLLWEI SLG  PYP  + + D    +R G R+  P
Sbjct: 266 KWMAPESIFDKIYSTKSDVWSYGVLLWEIFSLGGSPYPGVQMDEDFCSRLREGMRMRAP 324

>pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule W259 Length = 287

Iteration: 1
 Score = 69.3 bits (168), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 32/77 (41%), Positives = 47/77 (61%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE +  G F+ +SDVW+FG+LL EI++ G+ PYP  TN +V+  +  G R+ RP N
Sbjct: 183 KWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDN 242
Query: 63  CSHLIRSRNRLTENKAP 79
           C   +    RL   + P
Sbjct: 243 CPEELYQLMRLCWKERP 259

>pdb|1QPD|A Chain A, Structural Analysis Of The Lymphocyte-specific Kinase Lck In Complex With Non-selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 69.3 bits (168), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 32/77 (41%), Positives = 47/77 (61%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE +  G F+ +SDVW+FG+LL EI++ G+ PYP  TN +V+  +  G R+ RP N
Sbjct: 175 KWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDN 234
Query: 63  CSHLIRSRNRLTENKAP 79
           C   +    RL   + P
Sbjct: 235 CPEELYQLMRLCWKERP 251

>pdb|1K2P|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Domain Length = 263

Iteration: 1
 Score = 69.3 bits (168), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 31/59 (52%), Positives = 39/59 (66%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRP 60
            RW  PE L+   FSS+SD+WAFGVL+WEI SLG+ PY   TN +   ++  G RL RP
Sbjct: 165 VRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRLYRP 223

>pdb|2REI|A Chain A, Kinase Domain Of Human Ephrin Type-a Receptor 7 (epha7) Length = 318

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 41/61 (67%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RW APE +    F+S SDVW++G+++WE+MS G++PY   +N DV+  +  G RL  P +
Sbjct: 213 RWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQDVIKAIEEGYRLPAPMD 272
Query: 63  C 63
           C
Sbjct: 273 C 273

>pdb|2P0C|A Chain A, Catalytic Domain Of The Proto-Oncogene Tyrosine-Protein Kina Length = 313

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 41/62 (66%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            +W+A E L D +++S+SDVWAFGV +WEI + G  PYP   N ++  Y+  G RL +P 
Sbjct: 213 VKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQNHEMYDYLLHGHRLKQPE 272
Query: 62  NC 63
           +C
Sbjct: 273 DC 274

>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family- Selective Tyrosine Kinase Inhibitor Length = 454

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/61 (45%), Positives = 42/61 (68%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE +  G F+ +SDVW+FG+LL EI++ G+ PYP  +N +V+  +  G R+ RP N
Sbjct: 350 KWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVIRALERGYRMPRPEN 409
Query: 63  C 63
           C
Sbjct: 410 C 410

>pdb|3SXR|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase Complex With Dasatinib Length = 268

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/65 (49%), Positives = 41/65 (63%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE      +SS+SDVWAFG+L+WE+ SLG+ PY   TN +V+  V  G RL RP  
Sbjct: 170 KWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTNSEVVLKVSQGHRLYRPHL 229
Query: 63  CSHLI 67
            S  I
Sbjct: 230 ASDTI 234

>pdb|2HK5|A Chain A, Hck Kinase In Complex With Lck Targetted Inhibitor Pg- 1009247 Length = 270

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/61 (45%), Positives = 42/61 (68%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE +  G F+ +SDVW+FG+LL EI++ G+ PYP  +N +V+  +  G R+ RP N
Sbjct: 177 KWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVIRALERGYRMPRPEN 236
Query: 63  C 63
           C
Sbjct: 237 C 237

>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex Length = 438

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/61 (45%), Positives = 42/61 (68%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE +  G F+ +SDVW+FG+LL EI++ G+ PYP  +N +V+  +  G R+ RP N
Sbjct: 334 KWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVIRALERGYRMPRPEN 393
Query: 63  C 63
           C
Sbjct: 394 C 394

>pdb|4GT4|A Chain A, Structure Of Unliganded, Inactive Ror2 Kinase Domain Length = 308

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 40/61 (65%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RWMAPE ++ G FS  SD+W++GV+LWE+ S G QPY   +N DV+  +R    L  P +
Sbjct: 212 RWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQDVVEMIRNRQVLPCPDD 271
Query: 63  C 63
           C
Sbjct: 272 C 272

>pdb|3VHK|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Back Pocket Binder Length = 368

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPA-RTNVDVLHYVRGGGRLNRP 60
           +WMAPE + D +++ QSDVW+FGVLLWEI SLG  PYP  + + +    ++ G R+  P
Sbjct: 267 KWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAP 325

>pdb|1Y6A|A Chain A, Crystal Structure Of Vegfr2 In Complex With A 2-Anilino-5-Aryl-Oxazole Inhibitor Length = 366

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPA-RTNVDVLHYVRGGGRLNRP 60
           +WMAPE + D +++ QSDVW+FGVLLWEI SLG  PYP  + + +    ++ G R+  P
Sbjct: 265 KWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAP 323

>pdb|3VID|A Chain A, Crystal Structure Of Human Vegfr2 Kinase Domain With Compound A Length = 356

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPA-RTNVDVLHYVRGGGRLNRP 60
           +WMAPE + D +++ QSDVW+FGVLLWEI SLG  PYP  + + +    ++ G R+  P
Sbjct: 258 KWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAP 316

>pdb|3ZZW|A Chain A, Crystal Structure Of The Kinase Domain Of Ror2 Length = 289

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 40/61 (65%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RWMAPE ++ G FS  SD+W++GV+LWE+ S G QPY   +N DV+  +R    L  P +
Sbjct: 195 RWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQDVVEMIRNRQVLPCPDD 254
Query: 63  C 63
           C
Sbjct: 255 C 255

>pdb|3VHE|A Chain A, Crystal Structure Of Human Vegfr2 Kinase Domain With A Novel Pyrrolopyrimidine Inhibitor Length = 359

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPA-RTNVDVLHYVRGGGRLNRP 60
           +WMAPE + D +++ QSDVW+FGVLLWEI SLG  PYP  + + +    ++ G R+  P
Sbjct: 260 KWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAP 318

>pdb|3TUB|A Chain A, Crystal Structure Of Syk Kinase Domain With 1-(5-(6,7- Dimethoxyquinolin-4-Yloxy)pyridin-2-Yl)-3-((1r,2s)-2- Phenylcyclopropyl)urea Length = 293

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/61 (47%), Positives = 38/61 (62%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APEC+    FSS+SDVW+FGVL+WE  S GQ+PY      +V   +  G R+  PA 
Sbjct: 195 KWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMGCPAG 254
Query: 63  C 63
           C
Sbjct: 255 C 255

>pdb|3VF8|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Syk Catalytic Domain With Pyrazolylbenzimidazole Inhibitor 416 Length = 299

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/61 (47%), Positives = 38/61 (62%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APEC+    FSS+SDVW+FGVL+WE  S GQ+PY      +V   +  G R+  PA 
Sbjct: 195 KWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMGCPAG 254
Query: 63  C 63
           C
Sbjct: 255 C 255

>pdb|3VNT|A Chain A, Crystal Structure Of The Kinase Domain Of Human Vegfr2 With A [1, 3]thiazolo[5,4-B]pyridine Derivative Length = 318

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPA-RTNVDVLHYVRGGGRLNRP 60
           +WMAPE + D +++ QSDVW+FGVLLWEI SLG  PYP  + + +    ++ G R+  P
Sbjct: 217 KWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAP 275

>pdb|1XBA|A Chain A, Crystal Structure Of Apo Syk Tyrosine Kinase Domain Length = 291

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/61 (47%), Positives = 38/61 (62%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APEC+    FSS+SDVW+FGVL+WE  S GQ+PY      +V   +  G R+  PA 
Sbjct: 185 KWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMGCPAG 244
Query: 63  C 63
           C
Sbjct: 245 C 245

>pdb|4DFL|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Complexed With A Sulfonamidopyrazine Piperidine Inhibitor Length = 274

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/61 (47%), Positives = 38/61 (62%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APEC+    FSS+SDVW+FGVL+WE  S GQ+PY      +V   +  G R+  PA 
Sbjct: 175 KWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMGCPAG 234
Query: 63  C 63
           C
Sbjct: 235 C 235

>pdb|2XIR|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With Pf-00337210 (N,2-Dimethyl-6-(7-(2-Morpholinoethoxy) Quinolin-4-Yloxy)benzofuran-3-Carboxamide) Length = 316

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPA-RTNVDVLHYVRGGGRLNRP 60
           +WMAPE + D +++ QSDVW+FGVLLWEI SLG  PYP  + + +    ++ G R+  P
Sbjct: 215 KWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAP 273

>pdb|4F4P|A Chain A, Syk In Complex With Ligand Lasw836 Length = 273

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/61 (47%), Positives = 38/61 (62%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APEC+    FSS+SDVW+FGVL+WE  S GQ+PY      +V   +  G R+  PA 
Sbjct: 173 KWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMGCPAG 232
Query: 63  C 63
           C
Sbjct: 233 C 233

>pdb|3SRV|B Chain B, Crystal Structure Of Spleen Tyrosine Kinase (Syk) In Complex With A Diaminopyrimidine Carboxamide Inhibitor Length = 277

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/61 (47%), Positives = 38/61 (62%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APEC+    FSS+SDVW+FGVL+WE  S GQ+PY      +V   +  G R+  PA 
Sbjct: 179 KWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMGCPAG 238
Query: 63  C 63
           C
Sbjct: 239 C 239

>pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 269

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 40/62 (64%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            +W APE L +  FS++SDVW+FG+LLWEI S G+ PYP     DV+  V  G +++ P 
Sbjct: 169 VKWTAPEALREAAFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKMDAPD 228
Query: 62  NC 63
            C
Sbjct: 229 GC 230

>pdb|3SRV|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase (Syk) In Complex With A Diaminopyrimidine Carboxamide Inhibitor Length = 277

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/61 (47%), Positives = 38/61 (62%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APEC+    FSS+SDVW+FGVL+WE  S GQ+PY      +V   +  G R+  PA 
Sbjct: 179 KWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMGCPAG 238
Query: 63  C 63
           C
Sbjct: 239 C 239

>pdb|3EMG|A Chain A, Discovery And Sar Of Novel 4-Thiazolyl-2- Phenylaminopyrimidines As Potent Inhibitors Of Spleen Tyrosine Kinase (Syk) Length = 291

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/61 (47%), Positives = 38/61 (62%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APEC+    FSS+SDVW+FGVL+WE  S GQ+PY      +V   +  G R+  PA 
Sbjct: 193 KWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMGCPAG 252
Query: 63  C 63
           C
Sbjct: 253 C 253

>pdb|3CJF|A Chain A, Crystal Structure Of Vegfr2 In Complex With A 3,4,5-Trimethoxy Aniline Containing Pyrimidine Length = 309

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPA-RTNVDVLHYVRGGGRLNRP 60
           +WMAPE + D +++ QSDVW+FGVLLWEI SLG  PYP  + + +    ++ G R+  P
Sbjct: 211 KWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFXRRLKEGTRMRAP 269

>pdb|1RJB|A Chain A, Crystal Structure Of Flt3 Length = 344

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 43/60 (71%), Gaps = 3/60 (5%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHY--VRGGGRLNRP 60
           +WMAPE L +G+++ +SDVW++G+LLWEI SLG  PYP    VD   Y  ++ G ++++P
Sbjct: 239 KWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPG-IPVDANFYKLIQNGFKMDQP 297

>pdb|2R2P|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 5 (Epha5) Length = 295

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 41/61 (67%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RW APE +    F+S SDVW++G+++WE++S G++PY   TN DV+  V  G RL  P +
Sbjct: 192 RWTAPEAIAFRKFTSASDVWSYGIVMWEVVSYGERPYWEMTNQDVIKAVEEGYRLPSPMD 251
Query: 63  C 63
           C
Sbjct: 252 C 252

>pdb|4FL3|A Chain A, Structural And Biophysical Characterization Of The Syk Activation Switch Length = 635

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 38/62 (61%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            +W APEC+    FSS+SDVW+FGVL+WE  S GQ+PY      +V   +  G R+  PA
Sbjct: 536 VKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMGCPA 595
Query: 62  NC 63
            C
Sbjct: 596 GC 597

>pdb|4FL2|A Chain A, Structural And Biophysical Characterization Of The Syk Activation Switch Length = 636

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 38/62 (61%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            +W APEC+    FSS+SDVW+FGVL+WE  S GQ+PY      +V   +  G R+  PA
Sbjct: 537 VKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMGCPA 596
Query: 62  NC 63
            C
Sbjct: 597 GC 598

>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length Carboxyl-Terminal Src Kinase At 2.5 A Resolution Length = 450

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 40/62 (64%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            +W APE L +  FS++SDVW+FG+LLWEI S G+ PYP     DV+  V  G +++ P 
Sbjct: 350 VKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKMDAPD 409
Query: 62  NC 63
            C
Sbjct: 410 GC 411

>pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 263

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 40/62 (64%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            +W APE L +  FS++SDVW+FG+LLWEI S G+ PYP     DV+  V  G +++ P 
Sbjct: 163 VKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKMDAPD 222
Query: 62  NC 63
            C
Sbjct: 223 GC 224

>pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In Complex With Inhibitor Staurosporine Length = 278

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 40/62 (64%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            +W APE L +  FS++SDVW+FG+LLWEI S G+ PYP     DV+  V  G +++ P 
Sbjct: 178 VKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKMDAPD 237
Query: 62  NC 63
            C
Sbjct: 238 GC 239

>pdb|1U59|A Chain A, Crystal Structure Of The Zap-70 Kinase Domain In Complex With Staurosporine Length = 287

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 26/61 (42%), Positives = 39/61 (63%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APEC+    FSS+SDVW++GV +WE +S GQ+PY      +V+ ++  G R+  P  
Sbjct: 178 KWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQGKRMECPPE 237
Query: 63  C 63
           C
Sbjct: 238 C 238

>pdb|2QOB|A Chain A, Human Epha3 Kinase Domain, Base Structure Length = 344

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 41/61 (67%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RW +PE +    F+S SDVW++G++LWE+MS G++PY   +N DV+  V  G RL  P +
Sbjct: 186 RWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSNQDVIKAVDEGYRLPPPMD 245
Query: 63  C 63
           C
Sbjct: 246 C 246

>pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To Substrate Kqwdnye[ptyr]iw Length = 371

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 41/61 (67%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RW +PE +    F+S SDVW++G++LWE+MS G++PY   +N DV+  V  G RL  P +
Sbjct: 213 RWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSNQDVIKAVDEGYRLPPPMD 272
Query: 63  C 63
           C
Sbjct: 273 C 273

>pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound Structure Length = 344

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 41/61 (67%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RW +PE +    F+S SDVW++G++LWE+MS G++PY   +N DV+  V  G RL  P +
Sbjct: 186 RWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSNQDVIKAVDEGYRLPPPMD 245
Query: 63  C 63
           C
Sbjct: 246 C 246

>pdb|2QO7|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Dephosphorylated, Amp-Pnp Bound Length = 373

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 41/61 (67%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RW +PE +    F+S SDVW++G++LWE+MS G++PY   +N DV+  V  G RL  P +
Sbjct: 215 RWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSNQDVIKAVDEGYRLPPPMD 274
Query: 63  C 63
           C
Sbjct: 275 C 275

>pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 373

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 41/61 (67%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RW +PE +    F+S SDVW++G++LWE+MS G++PY   +N DV+  V  G RL  P +
Sbjct: 215 RWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSNQDVIKAVDEGYRLPPPMD 274
Query: 63  C 63
           C
Sbjct: 275 C 275

>pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant Length = 373

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 41/61 (67%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RW +PE +    F+S SDVW++G++LWE+MS G++PY   +N DV+  V  G RL  P +
Sbjct: 215 RWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSNQDVIKAVDEGYRLPPPMD 274
Query: 63  C 63
           C
Sbjct: 275 C 275

>pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant Length = 373

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 41/61 (67%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RW +PE +    F+S SDVW++G++LWE+MS G++PY   +N DV+  V  G RL  P +
Sbjct: 215 RWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSNQDVIKAVDEGYRLPPPMD 274
Query: 63  C 63
           C
Sbjct: 275 C 275

>pdb|2Y6M|A Chain A, Crystal Structure Of Epha4 Kinase Domain Length = 291

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 41/61 (67%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RW APE +    F+S SDVW++G+++WE+MS G++PY   +N DV+  +  G RL  P +
Sbjct: 184 RWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQDVIKAIEEGYRLPPPMD 243
Query: 63  C 63
           C
Sbjct: 244 C 244

>pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f Double Mutant Length = 373

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 41/61 (67%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RW +PE +    F+S SDVW++G++LWE+MS G++PY   +N DV+  V  G RL  P +
Sbjct: 215 RWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSNQDVIKAVDEGYRLPPPMD 274
Query: 63  C 63
           C
Sbjct: 275 C 275

>pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor Awl-Ii- 38.3 Length = 361

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 41/61 (67%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RW +PE +    F+S SDVW++G++LWE+MS G++PY   +N DV+  V  G RL  P +
Sbjct: 203 RWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSNQDVIKAVDEGYRLPPPMD 262
Query: 63  C 63
           C
Sbjct: 263 C 263

>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742f Triple Mutant Length = 373

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 41/61 (67%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RW +PE +    F+S SDVW++G++LWE+MS G++PY   +N DV+  V  G RL  P +
Sbjct: 215 RWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSNQDVIKAVDEGYRLPPPMD 274
Query: 63  C 63
           C
Sbjct: 275 C 275

>pdb|2QON|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742a Triple Mutant Length = 373

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 41/61 (67%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RW +PE +    F+S SDVW++G++LWE+MS G++PY   +N DV+  V  G RL  P +
Sbjct: 215 RWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSNQDVIKAVDEGYRLPPPMD 274
Query: 63  C 63
           C
Sbjct: 275 C 275

>pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:s768a Triple Mutant Length = 373

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 41/61 (67%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RW +PE +    F+S SDVW++G++LWE+MS G++PY   +N DV+  V  G RL  P +
Sbjct: 215 RWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSNQDVIKAVDEGYRLPPPMD 274
Query: 63  C 63
           C
Sbjct: 275 C 275

>pdb|2I1M|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With An Arylamide Inhibitor Length = 333

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPA-RTNVDVLHYVRGGGRLNRP 60
            +WMAPE + D +++ QSDVW++G+LLWEI SLG  PYP    N      V+ G ++ +P
Sbjct: 230 VKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILVNSKFYKLVKDGYQMAQP 289
Query: 61  A 61
           A
Sbjct: 290 A 290

>pdb|2XYU|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With Vuf 12058 Length = 285

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 41/61 (67%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RW APE +    F+S SDVW++G+++WE+MS G++PY   +N DV+  +  G RL  P +
Sbjct: 178 RWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQDVIKAIEEGYRLPPPMD 237
Query: 63  C 63
           C
Sbjct: 238 C 238

>pdb|2HEL|A Chain A, Crystal Structure Of A Mutant Epha4 Kinase Domain (Y742a) Length = 306

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 41/61 (67%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RW APE +    F+S SDVW++G+++WE+MS G++PY   +N DV+  +  G RL  P +
Sbjct: 199 RWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQDVIKAIEEGYRLPPPMD 258
Query: 63  C 63
           C
Sbjct: 259 C 259

>pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596:y602:s768g Triple Mutant Length = 373

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 41/61 (67%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RW +PE +    F+S SDVW++G++LWE+MS G++PY   +N DV+  V  G RL  P +
Sbjct: 215 RWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSNQDVIKAVDEGYRLPPPMD 274
Query: 63  C 63
           C
Sbjct: 275 C 275

>pdb|3BEA|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With A Pyrimidinopyridone Inhibitor Length = 333

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPA-RTNVDVLHYVRGGGRLNRP 60
            +WMAPE + D +++ QSDVW++G+LLWEI SLG  PYP    N      V+ G ++ +P
Sbjct: 230 VKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILVNSKFYKLVKDGYQMAQP 289
Query: 61  A 61
           A
Sbjct: 290 A 290

>pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With Gleevec Length = 292

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 29/61 (47%), Positives = 35/61 (57%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE L    FS +SDVWAFGVLLWEI + G  PYP      V   +  G R+ +P  
Sbjct: 196 KWTAPESLAYNTFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYDLLEKGYRMEQPEG 255
Query: 63  C 63
           C
Sbjct: 256 C 256

>pdb|2OGV|A Chain A, Crystal Structure Of The Autoinhibited Human C-Fms Kinase Domain Length = 317

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPA-RTNVDVLHYVRGGGRLNRP 60
            +WMAPE + D +++ QSDVW++G+LLWEI SLG  PYP    N      V+ G ++ +P
Sbjct: 218 VKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILVNSKFYKLVKDGYQMAQP 277
Query: 61  A 61
           A
Sbjct: 278 A 278

>pdb|3LCD|A Chain A, Inhibitor Bound To A Dfg-In Structure Of The Kinase Domain Of Csf-1r Length = 329

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPA-RTNVDVLHYVRGGGRLNRP 60
            +WMAPE + D +++ QSDVW++G+LLWEI SLG  PYP    N      V+ G ++ +P
Sbjct: 226 VKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILVNSKFYKLVKDGYQMAQP 285
Query: 61  A 61
           A
Sbjct: 286 A 286

>pdb|2I0V|A Chain A, C-Fms Tyrosine Kinase In Complex With A Quinolone Inhibitor Length = 335

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPA-RTNVDVLHYVRGGGRLNRP 60
            +WMAPE + D +++ QSDVW++G+LLWEI SLG  PYP    N      V+ G ++ +P
Sbjct: 232 VKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILVNSKFYKLVKDGYQMAQP 291
Query: 61  A 61
           A
Sbjct: 292 A 292

>pdb|3EWH|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Pyridyl-Pyrimidine Benzimidazole Inhibitor Length = 314

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPA-RTNVDVLHYVRGGGRLNRP 60
           +WMAPE + D +++ QSDVW+FGVLLWEI SLG  PYP  + + +    ++ G R+  P
Sbjct: 206 KWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAP 264

>pdb|2P2H|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Pyridinyl-Triazine Inhibitor Length = 314

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPA-RTNVDVLHYVRGGGRLNRP 60
           +WMAPE + D +++ QSDVW+FGVLLWEI SLG  PYP  + + +    ++ G R+  P
Sbjct: 206 KWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAP 264

>pdb|2P2I|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Nicotinamide Inhibitor Length = 314

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPA-RTNVDVLHYVRGGGRLNRP 60
           +WMAPE + D +++ QSDVW+FGVLLWEI SLG  PYP  + + +    ++ G R+  P
Sbjct: 206 KWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAP 264

>pdb|1R0P|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With The Microbial Alkaloid K-252a Length = 312

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 39/62 (62%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            +WMA E L    F+++SDVW+FGVLLWE+M+ G  PYP     D+  Y+  G RL +P 
Sbjct: 199 VKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPE 258
Query: 62  NC 63
            C
Sbjct: 259 YC 260

>pdb|3U6J|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Pyrazolone Inhibitor Length = 314

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPA-RTNVDVLHYVRGGGRLNRP 60
           +WMAPE + D +++ QSDVW+FGVLLWEI SLG  PYP  + + +    ++ G R+  P
Sbjct: 206 KWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAP 264

>pdb|3Q6W|A Chain A, Structure Of Dually-phosphorylated Met Receptor Kinase In Complex With An Mk-2461 Analog With Specificity For The Activated Receptor Length = 307

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 39/62 (62%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            +WMA E L    F+++SDVW+FGVLLWE+M+ G  PYP     D+  Y+  G RL +P 
Sbjct: 200 VKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPE 259
Query: 62  NC 63
            C
Sbjct: 260 YC 261

>pdb|3F66|A Chain A, Human C-Met Kinase In Complex With Quinoxaline Inhibitor Length = 298

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 39/62 (62%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            +WMA E L    F+++SDVW+FGVLLWE+M+ G  PYP     D+  Y+  G RL +P 
Sbjct: 196 VKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPE 255
Query: 62  NC 63
            C
Sbjct: 256 YC 257

>pdb|4GG5|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor Length = 319

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 39/62 (62%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            +WMA E L    F+++SDVW+FGVLLWE+M+ G  PYP     D+  Y+  G RL +P 
Sbjct: 220 VKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPE 279
Query: 62  NC 63
            C
Sbjct: 280 YC 281

>pdb|3Q6U|A Chain A, Structure Of The Apo Met Receptor Kinase In The Dually-Phosphorylated, Activated State Length = 308

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 39/62 (62%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            +WMA E L    F+++SDVW+FGVLLWE+M+ G  PYP     D+  Y+  G RL +P 
Sbjct: 201 VKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPE 260
Query: 62  NC 63
            C
Sbjct: 261 YC 262

>pdb|2WGJ|A Chain A, X-Ray Structure Of Pf-02341066 Bound To The Kinase Domain Of C-Met Length = 306

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 39/62 (62%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            +WMA E L    F+++SDVW+FGVLLWE+M+ G  PYP     D+  Y+  G RL +P 
Sbjct: 198 VKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPE 257
Query: 62  NC 63
            C
Sbjct: 258 YC 259

>pdb|3DKG|A Chain A, Sgx Clone 5698a109kfg1h1 Length = 317

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 39/62 (62%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            +WMA E L    F+++SDVW+FGVLLWE+M+ G  PYP     D+  Y+  G RL +P 
Sbjct: 202 VKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPE 261
Query: 62  NC 63
            C
Sbjct: 262 YC 263

>pdb|2WD1|A Chain A, Human C-Met Kinase In Complex With Azaindole Inhibitor Length = 292

Iteration: 1
 Score = 65.5 bits (158), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 39/62 (62%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            +WMA E L    F+++SDVW+FGVLLWE+M+ G  PYP     D+  Y+  G RL +P 
Sbjct: 193 VKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPE 252
Query: 62  NC 63
            C
Sbjct: 253 YC 254

>pdb|2RFN|A Chain A, X-ray Structure Of C-met With Inhibitor. Length = 310

Iteration: 1
 Score = 65.5 bits (158), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 39/62 (62%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            +WMA E L    F+++SDVW+FGVLLWE+M+ G  PYP     D+  Y+  G RL +P 
Sbjct: 201 VKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPE 260
Query: 62  NC 63
            C
Sbjct: 261 YC 262

>pdb|3CTH|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With A Aminopyridine Based Inhibitor Length = 314

Iteration: 1
 Score = 65.5 bits (158), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 39/62 (62%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            +WMA E L    F+++SDVW+FGVLLWE+M+ G  PYP     D+  Y+  G RL +P 
Sbjct: 201 VKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPE 260
Query: 62  NC 63
            C
Sbjct: 261 YC 262

>pdb|2OZO|A Chain A, Autoinhibited Intact Human Zap-70 Length = 613

Iteration: 1
 Score = 65.5 bits (158), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 39/61 (63%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APEC+    FSS+SDVW++GV +WE +S GQ+PY      +V+ ++  G R+  P  
Sbjct: 504 KWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQGKRMECPPE 563
Query: 63  C 63
           C
Sbjct: 564 C 564

>pdb|3DKC|A Chain A, Sgx Clone 5698a65kfg1h1 Length = 317

Iteration: 1
 Score = 65.5 bits (158), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 39/62 (62%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            +WMA E L    F+++SDVW+FGVLLWE+M+ G  PYP     D+  Y+  G RL +P 
Sbjct: 202 VKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPE 261
Query: 62  NC 63
            C
Sbjct: 262 YC 263

>pdb|3LQ8|A Chain A, Structure Of The Kinase Domain Of C-Met Bound To Xl880 (Gsk1 Length = 302

Iteration: 1
 Score = 65.5 bits (158), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 39/62 (62%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            +WMA E L    F+++SDVW+FGVLLWE+M+ G  PYP     D+  Y+  G RL +P 
Sbjct: 199 VKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPE 258
Query: 62  NC 63
            C
Sbjct: 259 YC 260

>pdb|3A4P|A Chain A, Human C-Met Kinase Domain Complexed With 6-Benzyloxyquinoline Inhibitor Length = 319

Iteration: 1
 Score = 65.5 bits (158), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 39/62 (62%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            +WMA E L    F+++SDVW+FGVLLWE+M+ G  PYP     D+  Y+  G RL +P 
Sbjct: 206 VKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPE 265
Query: 62  NC 63
            C
Sbjct: 266 YC 267

>pdb|3I5N|A Chain A, Crystal Structure Of C-Met With Triazolopyridazine Inhibitor 13 Length = 309

Iteration: 1
 Score = 65.5 bits (158), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 39/62 (62%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            +WMA E L    F+++SDVW+FGVLLWE+M+ G  PYP     D+  Y+  G RL +P 
Sbjct: 200 VKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPE 259
Query: 62  NC 63
            C
Sbjct: 260 YC 261

>pdb|3LCO|A Chain A, Inhibitor Bound To A Dfg-Out Structure Of The Kinase Domain Of Csf-1r Length = 324

Iteration: 1
 Score = 65.5 bits (158), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPA-RTNVDVLHYVRGGGRLNRP 60
            +WMAPE + D +++ QSDVW++G+LLWEI SLG  PYP    N      V+ G ++ +P
Sbjct: 224 VKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILVNSKFYKLVKDGYQMAQP 283
Query: 61  A 61
           A
Sbjct: 284 A 284

>pdb|3QTI|A Chain A, C-Met Kinase In Complex With Nvp-Bvu972 Length = 314

Iteration: 1
 Score = 65.5 bits (158), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 39/62 (62%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            +WMA E L    F+++SDVW+FGVLLWE+M+ G  PYP     D+  Y+  G RL +P 
Sbjct: 201 VKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPE 260
Query: 62  NC 63
            C
Sbjct: 261 YC 262

>pdb|1YWN|A Chain A, Vegfr2 In Complex With A Novel 4-amino-furo[2,3-d]pyrimidine Length = 316

Iteration: 1
 Score = 65.5 bits (158), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPA-RTNVDVLHYVRGGGRLNRP 60
           +WMAPE + D +++ QSDVW+FGVLLWEI SLG  PYP  + + +    ++ G R+  P
Sbjct: 215 KWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAP 273

>pdb|3C7Q|A Chain A, Structure Of Vegfr2 Kinase Domain In Complex With Bibf1120 Length = 316

Iteration: 1
 Score = 65.5 bits (158), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPA-RTNVDVLHYVRGGGRLNRP 60
           +WMAPE + D +++ QSDVW+FGVLLWEI SLG  PYP  + + +    ++ G R+  P
Sbjct: 215 KWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAP 273

>pdb|4AGC|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase Domains) In Complex With Axitinib (Ag-013736) (N-Methyl-2-( 3-((E)-2-Pyridin-2-Yl-Vinyl)-1h-Indazol-6-Ylsulfanyl)- Benzamide) Length = 353

Iteration: 1
 Score = 65.5 bits (158), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPA-RTNVDVLHYVRGGGRLNRP 60
           +WMAPE + D +++ QSDVW+FGVLLWEI SLG  PYP  + + +    ++ G R+  P
Sbjct: 252 KWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAP 310

>pdb|1VR2|A Chain A, Human Vascular Endothelial Growth Factor Receptor 2 (Kdr) Kinase Domain Length = 316

Iteration: 1
 Score = 65.5 bits (158), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPA-RTNVDVLHYVRGGGRLNRP 60
           +WMAPE + D +++ QSDVW+FGVLLWEI SLG  PYP  + + +    ++ G R+  P
Sbjct: 215 KWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAP 273

>pdb|3C1X|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With A Pyrrolotriazine Based Inhibitor Length = 373

Iteration: 1
 Score = 65.5 bits (158), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 39/62 (62%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            +WMA E L    F+++SDVW+FGVLLWE+M+ G  PYP     D+  Y+  G RL +P 
Sbjct: 260 VKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPE 319
Query: 62  NC 63
            C
Sbjct: 320 YC 321

>pdb|2G15|A Chain A, Structural Characterization Of Autoinhibited C-Met Kinase Length = 318

Iteration: 1
 Score = 65.5 bits (158), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 39/62 (62%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            +WMA E L    F+++SDVW+FGVLLWE+M+ G  PYP     D+  Y+  G RL +P 
Sbjct: 219 VKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPE 278
Query: 62  NC 63
            C
Sbjct: 279 YC 280

>pdb|3CJG|A Chain A, Crystal Structure Of Vegfr2 In Complex With A 3,4,5-Trimethoxy Aniline Containing Pyrimidine Length = 309

Iteration: 1
 Score = 65.5 bits (158), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPA-RTNVDVLHYVRGGGRLNRP 60
           +WMAPE + D +++ QSDVW+FGVLLWEI SLG  PYP  + + +    ++ G R+  P
Sbjct: 211 KWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAP 269

>pdb|2OH4|A Chain A, Crystal Structure Of Vegfr2 With A Benzimidazole-Urea Inhibitor Length = 316

Iteration: 1
 Score = 65.5 bits (158), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPA-RTNVDVLHYVRGGGRLNRP 60
           +WMAPE + D +++ QSDVW+FGVLLWEI SLG  PYP  + + +    ++ G R+  P
Sbjct: 215 KWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAP 273

>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 65.5 bits (158), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 32/78 (41%), Positives = 38/78 (48%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE L    FS +SDVWAFGVLLWEI + G  PYP      V   +    R+ RP  
Sbjct: 175 KWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDPSQVYELLEKDYRMERPEG 234
Query: 63  CSHLIRSRNRLTENKAPS 80
           C   +    R      PS
Sbjct: 235 CPEKVYELMRACWQWNPS 252

>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein Kinase Length = 333

Iteration: 1
 Score = 65.5 bits (158), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 42/65 (64%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RW APE +    F+S SDVW+FG+++WE+M+ G++PY   +N +V+  +  G RL  P +
Sbjct: 215 RWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNHEVMKAINDGFRLPTPMD 274
Query: 63  CSHLI 67
           C   I
Sbjct: 275 CPSAI 279

>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 65.5 bits (158), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 32/78 (41%), Positives = 38/78 (48%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE L    FS +SDVWAFGVLLWEI + G  PYP      V   +    R+ RP  
Sbjct: 175 KWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDPSQVYELLEKDYRMERPEG 234
Query: 63  CSHLIRSRNRLTENKAPS 80
           C   +    R      PS
Sbjct: 235 CPEKVYELMRACWQWNPS 252

>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 277

Iteration: 1
 Score = 65.1 bits (157), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 32/78 (41%), Positives = 38/78 (48%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE L    FS +SDVWAFGVLLWEI + G  PYP      V   +    R+ RP  
Sbjct: 175 KWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDPSQVYELLEKDYRMERPEG 234
Query: 63  CSHLIRSRNRLTENKAPS 80
           C   +    R      PS
Sbjct: 235 CPEKVYELMRACWQWNPS 252

>pdb|1FVR|A Chain A, Tie2 Kinase Domain Length = 327

Iteration: 1
 Score = 65.1 bits (157), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 40/63 (63%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            RWMA E L   ++++ SDVW++GVLLWEI+SLG  PY   T  ++   +  G RL +P 
Sbjct: 205 VRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYRLEKPL 264
Query: 62  NCS 64
           NC 
Sbjct: 265 NCD 267

>pdb|2WQB|A Chain A, Structure Of The Tie2 Kinase Domain In Complex With A Thiazolopyrimidine Inhibitor Length = 324

Iteration: 1
 Score = 65.1 bits (157), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 40/63 (63%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            RWMA E L   ++++ SDVW++GVLLWEI+SLG  PY   T  ++   +  G RL +P 
Sbjct: 202 VRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYRLEKPL 261
Query: 62  NCS 64
           NC 
Sbjct: 262 NCD 264

>pdb|2OO8|X Chain X, Synthesis, Structural Analysis, And Sar Studies Of Triazine Derivatives As Potent, Selective Tie-2 Inhibitors Length = 317

Iteration: 1
 Score = 65.1 bits (157), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 40/63 (63%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            RWMA E L   ++++ SDVW++GVLLWEI+SLG  PY   T  ++   +  G RL +P 
Sbjct: 195 VRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYRLEKPL 254
Query: 62  NCS 64
           NC 
Sbjct: 255 NCD 257

>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable, Small-Molecule C- Abl Kinase Activator That Binds To The Myristoyl Binding Site Length = 298

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/78 (41%), Positives = 38/78 (48%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE L    FS +SDVWAFGVLLWEI + G  PYP      V   +    R+ RP  
Sbjct: 190 KWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPEG 249
Query: 63  CSHLIRSRNRLTENKAPS 80
           C   +    R      PS
Sbjct: 250 CPEKVYELMRACWQWNPS 267

>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase Catalytic Domain Complexed With Type Ii Inhibitor Length = 287

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/78 (41%), Positives = 38/78 (48%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE L    FS +SDVWAFGVLLWEI + G  PYP      V   +    R+ RP  
Sbjct: 179 KWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPEG 238
Query: 63  CSHLIRSRNRLTENKAPS 80
           C   +    R      PS
Sbjct: 239 CPEKVYELMRACWQWNPS 256

>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound With A Dfg- Out Inhibitor Ap24589 Length = 284

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/78 (41%), Positives = 38/78 (48%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE L    FS +SDVWAFGVLLWEI + G  PYP      V   +    R+ RP  
Sbjct: 177 KWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPEG 236
Query: 63  CSHLIRSRNRLTENKAPS 80
           C   +    R      PS
Sbjct: 237 CPEKVYELMRACWQWNPS 254

>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A Dfg-Out Inhibitor Ap24534 Length = 284

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/78 (41%), Positives = 38/78 (48%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE L    FS +SDVWAFGVLLWEI + G  PYP      V   +    R+ RP  
Sbjct: 177 KWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPEG 236
Query: 63  CSHLIRSRNRLTENKAPS 80
           C   +    R      PS
Sbjct: 237 CPEKVYELMRACWQWNPS 254

>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant Abl Mutant In Complex With The Aurora Kinase Inhibitor Vx-680 Length = 287

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/78 (41%), Positives = 38/78 (48%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE L    FS +SDVWAFGVLLWEI + G  PYP      V   +    R+ RP  
Sbjct: 178 KWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPEG 237
Query: 63  CSHLIRSRNRLTENKAPS 80
           C   +    R      PS
Sbjct: 238 CPEKVYELMRACWQWNPS 255

>pdb|3V5Q|A Chain A, Discovery Of A Selective Trk Inhibitor With Efficacy In Rodent Cancer Tumor Models Length = 297

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 41/61 (67%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RWM PE ++   F+++SDVW+FGV+LWEI + G+QP+   +N +V+  +  G  L RP  
Sbjct: 200 RWMPPESIMYRKFTTESDVWSFGVILWEIFTYGKQPWFQLSNTEVIECITQGRVLERPRV 259
Query: 63  C 63
           C
Sbjct: 260 C 260

>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound With Ppy-A Length = 288

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/78 (41%), Positives = 38/78 (48%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE L    FS +SDVWAFGVLLWEI + G  PYP      V   +    R+ RP  
Sbjct: 177 KWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPEG 236
Query: 63  CSHLIRSRNRLTENKAPS 80
           C   +    R      PS
Sbjct: 237 CPEKVYELMRACWQWNPS 254

>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex With Inno-406 Length = 293

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/78 (41%), Positives = 38/78 (48%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE L    FS +SDVWAFGVLLWEI + G  PYP      V   +    R+ RP  
Sbjct: 182 KWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPEG 241
Query: 63  CSHLIRSRNRLTENKAPS 80
           C   +    R      PS
Sbjct: 242 CPEKVYELMRACWQWNPS 259

>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/78 (41%), Positives = 38/78 (48%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE L    FS +SDVWAFGVLLWEI + G  PYP      V   +    R+ RP  
Sbjct: 179 KWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPEG 238
Query: 63  CSHLIRSRNRLTENKAPS 80
           C   +    R      PS
Sbjct: 239 CPEKVYELMRACWQWNPS 256

>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With The Inhibitor Pha-739358 Length = 286

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/78 (41%), Positives = 38/78 (48%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE L    FS +SDVWAFGVLLWEI + G  PYP      V   +    R+ RP  
Sbjct: 178 KWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPEG 237
Query: 63  CSHLIRSRNRLTENKAPS 80
           C   +    R      PS
Sbjct: 238 CPEKVYELMRACWQWNPS 255

>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a Length = 288

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/78 (41%), Positives = 38/78 (48%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE L    FS +SDVWAFGVLLWEI + G  PYP      V   +    R+ RP  
Sbjct: 177 KWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPEG 236
Query: 63  CSHLIRSRNRLTENKAPS 80
           C   +    R      PS
Sbjct: 237 CPEKVYELMRACWQWNPS 254

>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/78 (41%), Positives = 38/78 (48%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE L    FS +SDVWAFGVLLWEI + G  PYP      V   +    R+ RP  
Sbjct: 179 KWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPEG 238
Query: 63  CSHLIRSRNRLTENKAPS 80
           C   +    R      PS
Sbjct: 239 CPEKVYELMRACWQWNPS 256

>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571, Glivec) Length = 273

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/78 (41%), Positives = 38/78 (48%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE L    FS +SDVWAFGVLLWEI + G  PYP      V   +    R+ RP  
Sbjct: 177 KWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPEG 236
Query: 63  CSHLIRSRNRLTENKAPS 80
           C   +    R      PS
Sbjct: 237 CPEKVYELMRACWQWNPS 254

>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082 Length = 270

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/78 (41%), Positives = 38/78 (48%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE L    FS +SDVWAFGVLLWEI + G  PYP      V   +    R+ RP  
Sbjct: 177 KWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPEG 236
Query: 63  CSHLIRSRNRLTENKAPS 80
           C   +    R      PS
Sbjct: 237 CPEKVYELMRACWQWNPS 254

>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A Small Molecule Inhibitor Length = 293

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/78 (41%), Positives = 38/78 (48%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE L    FS +SDVWAFGVLLWEI + G  PYP      V   +    R+ RP  
Sbjct: 182 KWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPEG 241
Query: 63  CSHLIRSRNRLTENKAPS 80
           C   +    R      PS
Sbjct: 242 CPEKVYELMRACWQWNPS 259

>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i Mutant In Complex With Dcc-2036 Length = 277

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/78 (41%), Positives = 38/78 (48%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE L    FS +SDVWAFGVLLWEI + G  PYP      V   +    R+ RP  
Sbjct: 182 KWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPEG 241
Query: 63  CSHLIRSRNRLTENKAPS 80
           C   +    R      PS
Sbjct: 242 CPEKVYELMRACWQWNPS 259

>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970 Length = 277

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/78 (41%), Positives = 38/78 (48%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE L    FS +SDVWAFGVLLWEI + G  PYP      V   +    R+ RP  
Sbjct: 181 KWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPEG 240
Query: 63  CSHLIRSRNRLTENKAPS 80
           C   +    R      PS
Sbjct: 241 CPEKVYELMRACWQWNPS 258

>pdb|2HEN|A Chain A, Crystal Structure Of The Ephb2 Receptor Kinase Domain In Complex With Adp Length = 286

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 41/61 (67%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RW APE +    F+S SDVW++G+++WE+MS G++PY   TN DV++ +    RL  P +
Sbjct: 179 RWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYWDMTNQDVINAIEQDYRLPPPMD 238
Query: 63  C 63
           C
Sbjct: 239 C 239

>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In Complex With Dcc- 2036 Length = 277

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/78 (41%), Positives = 38/78 (48%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE L    FS +SDVWAFGVLLWEI + G  PYP      V   +    R+ RP  
Sbjct: 182 KWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPEG 241
Query: 63  CSHLIRSRNRLTENKAPS 80
           C   +    R      PS
Sbjct: 242 CPEKVYELMRACWQWNPS 259

>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To Activated Abl Kinase Domain Length = 278

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/78 (41%), Positives = 38/78 (48%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE L    FS +SDVWAFGVLLWEI + G  PYP      V   +    R+ RP  
Sbjct: 182 KWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPEG 241
Query: 63  CSHLIRSRNRLTENKAPS 80
           C   +    R      PS
Sbjct: 242 CPEKVYELMRACWQWNPS 259

>pdb|1JPA|A Chain A, Crystal Structure Of Unphosphorylated Ephb2 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 312

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 41/61 (67%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RW APE +    F+S SDVW++G+++WE+MS G++PY   TN DV++ +    RL  P +
Sbjct: 205 RWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYWDMTNQDVINAIEQDYRLPPPMD 264
Query: 63  C 63
           C
Sbjct: 265 C 265

>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 495

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 34/61 (55%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE L    FS +SDVWAFGVLLWEI + G  PYP      V   +    R+ RP  
Sbjct: 384 KWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPEG 443
Query: 63  C 63
           C
Sbjct: 444 C 444

>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 537

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 34/61 (55%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE L    FS +SDVWAFGVLLWEI + G  PYP      V   +    R+ RP  
Sbjct: 423 KWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPEG 482
Query: 63  C 63
           C
Sbjct: 483 C 483

>pdb|4GT5|A Chain A, Crystal Structure Of The Inactive Trka Kinase Domain Length = 306

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 40/61 (65%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RWM PE ++   F+++SDVW+FGV+LWEI + G+QP+   +N + +  +  G  L RP  
Sbjct: 202 RWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTEAIDCITQGRELERPRA 261
Query: 63  C 63
           C
Sbjct: 262 C 262

>pdb|4F0I|A Chain A, Crystal Structure Of Apo Trka Length = 300

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 40/61 (65%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RWM PE ++   F+++SDVW+FGV+LWEI + G+QP+   +N + +  +  G  L RP  
Sbjct: 196 RWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTEAIDCITQGRELERPRA 255
Query: 63  C 63
           C
Sbjct: 256 C 256

>pdb|4AOJ|A Chain A, Human Trka In Complex With The Inhibitor Az-23 Length = 329

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 40/61 (65%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RWM PE ++   F+++SDVW+FGV+LWEI + G+QP+   +N + +  +  G  L RP  
Sbjct: 225 RWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTEAIDCITQGRELERPRA 284
Query: 63  C 63
           C
Sbjct: 285 C 285

>pdb|2DQ7|X Chain X, Crystal Structure Of Fyn Kinase Domain Complexed With Staurosporine Length = 283

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 40/61 (65%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE  + G F+ +SDVW+FG+LL E+++ G+ PYP   N +VL  V  G R+  P +
Sbjct: 171 KWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMNNREVLEQVERGYRMPCPQD 230
Query: 63  C 63
           C
Sbjct: 231 C 231

>pdb|4EBW|A Chain A, Structure Of Focal Adhesion Kinase Catalytic Domain In Complex With Novel Allosteric Inhibitor Length = 304

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 45/88 (51%), Gaps = 12/88 (13%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMAPE +    F+S SDVW FGV +WEI+  G +P+    N DV+  +  G RL  P N
Sbjct: 205 KWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLPMPPN 264
Query: 63  CSHLIRS------------RNRLTENKA 78
           C   + S            R R TE KA
Sbjct: 265 CPPTLYSLMTKCWAYDPSRRPRFTELKA 292

>pdb|2JKK|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With Bis- Anilino Pyrimidine Inhibitor Length = 276

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 45/88 (51%), Gaps = 12/88 (13%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMAPE +    F+S SDVW FGV +WEI+  G +P+    N DV+  +  G RL  P N
Sbjct: 177 KWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLPMPPN 236
Query: 63  CSHLIRS------------RNRLTENKA 78
           C   + S            R R TE KA
Sbjct: 237 CPPTLYSLMTKCWAYDPSRRPRFTELKA 264

>pdb|2J0K|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase Containing The Ferm And Kinase Domains. Length = 656

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 45/88 (51%), Gaps = 12/88 (13%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMAPE +    F+S SDVW FGV +WEI+  G +P+    N DV+  +  G RL  P N
Sbjct: 557 KWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLPMPPN 616
Query: 63  CSHLIRS------------RNRLTENKA 78
           C   + S            R R TE KA
Sbjct: 617 CPPTLYSLMTKCWAYDPSRRPRFTELKA 644

>pdb|2VWU|A Chain A, Ephb4 Kinase Domain Inhibitor Complex Length = 302

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 40/61 (65%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RW APE +    F+S SD W++G+++WE+MS G++PY   +N DV++ +    RL  P +
Sbjct: 188 RWTAPEAIAFRKFTSASDAWSYGIVMWEVMSFGERPYWDMSNQDVINAIEQDYRLPPPPD 247
Query: 63  C 63
           C
Sbjct: 248 C 248

>pdb|4AW5|A Chain A, Complex Of The Ephb4 Kinase Domain With An Oxindole Inhibitor Length = 291

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 40/61 (65%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RW APE +    F+S SD W++G+++WE+MS G++PY   +N DV++ +    RL  P +
Sbjct: 186 RWTAPEAIAFRKFTSASDAWSYGIVMWEVMSFGERPYWDMSNQDVINAIEQDYRLPPPPD 245
Query: 63  C 63
           C
Sbjct: 246 C 246

>pdb|2JKM|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With Bis- Anilino Pyrimidine Inhibitor Length = 276

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 45/88 (51%), Gaps = 12/88 (13%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMAPE +    F+S SDVW FGV +WEI+  G +P+    N DV+  +  G RL  P N
Sbjct: 177 KWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLPMPPN 236
Query: 63  CSHLIRS------------RNRLTENKA 78
           C   + S            R R TE KA
Sbjct: 237 CPPTLYSLMTKCWAYDPSRRPRFTELKA 264

>pdb|2J0L|A Chain A, Crystal Structure Of A The Active Conformation Of The Kinase Domain Of Focal Adhesion Kinase With A Phosphorylated Activation Loop Length = 276

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 45/88 (51%), Gaps = 12/88 (13%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMAPE +    F+S SDVW FGV +WEI+  G +P+    N DV+  +  G RL  P N
Sbjct: 177 KWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLPMPPN 236
Query: 63  CSHLIRS------------RNRLTENKA 78
           C   + S            R R TE KA
Sbjct: 237 CPPTLYSLMTKCWAYDPSRRPRFTELKA 264

>pdb|2J0J|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase Containing The Ferm And Kinase Domains Length = 656

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 45/88 (51%), Gaps = 12/88 (13%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMAPE +    F+S SDVW FGV +WEI+  G +P+    N DV+  +  G RL  P N
Sbjct: 557 KWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLPMPPN 616
Query: 63  CSHLIRS------------RNRLTENKA 78
           C   + S            R R TE KA
Sbjct: 617 CPPTLYSLMTKCWAYDPSRRPRFTELKA 644

>pdb|2ETM|A Chain A, Crystal Structure Of Focal Adhesion Kinase Domain Complexed With 7h-Pyrrolo [2,3-D] Pyrimidine Derivative Length = 281

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 45/88 (51%), Gaps = 12/88 (13%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMAPE +    F+S SDVW FGV +WEI+  G +P+    N DV+  +  G RL  P N
Sbjct: 179 KWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLPMPPN 238
Query: 63  CSHLIRS------------RNRLTENKA 78
           C   + S            R R TE KA
Sbjct: 239 CPPTLYSLMTKCWAYDPSRRPRFTELKA 266

>pdb|3PXK|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With Pyrrolo[2,3- D]thiazole Length = 282

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 45/88 (51%), Gaps = 12/88 (13%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMAPE +    F+S SDVW FGV +WEI+  G +P+    N DV+  +  G RL  P N
Sbjct: 180 KWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLPMPPN 239
Query: 63  CSHLIRS------------RNRLTENKA 78
           C   + S            R R TE KA
Sbjct: 240 CPPTLYSLMTKCWAYDPSRRPRFTELKA 267

>pdb|3BZ3|A Chain A, Crystal Structure Analysis Of Focal Adhesion Kinase With A Methanesulfonamide Diaminopyrimidine Inhibitor Length = 276

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 45/88 (51%), Gaps = 12/88 (13%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMAPE +    F+S SDVW FGV +WEI+  G +P+    N DV+  +  G RL  P N
Sbjct: 174 KWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLPMPPN 233
Query: 63  CSHLIRS------------RNRLTENKA 78
           C   + S            R R TE KA
Sbjct: 234 CPPTLYSLMTKCWAYDPSRRPRFTELKA 261

>pdb|2J0M|B Chain B, Crystal Structure A Two-Chain Complex Between The Ferm And Kinase Domains Of Focal Adhesion Kinase. Length = 276

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 45/88 (51%), Gaps = 12/88 (13%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMAPE +    F+S SDVW FGV +WEI+  G +P+    N DV+  +  G RL  P N
Sbjct: 177 KWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLPMPPN 236
Query: 63  CSHLIRS------------RNRLTENKA 78
           C   + S            R R TE KA
Sbjct: 237 CPPTLYSLMTKCWAYDPSRRPRFTELKA 264

>pdb|1MP8|A Chain A, Crystal Structure Of Focal Adhesion Kinase (Fak) Length = 281

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 45/88 (51%), Gaps = 12/88 (13%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMAPE +    F+S SDVW FGV +WEI+  G +P+    N DV+  +  G RL  P N
Sbjct: 182 KWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLPMPPN 241
Query: 63  CSHLIRS------------RNRLTENKA 78
           C   + S            R R TE KA
Sbjct: 242 CPPTLYSLMTKCWAYDPSRRPRFTELKA 269

>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib Length = 266

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 39/59 (66%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRP 60
            +W +PE      +SS+SDVW+FGVL+WE+ S G+ PY  R+N +V+  +  G RL +P
Sbjct: 168 VKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGFRLYKP 226

>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2 Tyrosine Kinase Catalytic Domain Length = 264

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 39/59 (66%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRP 60
            +W +PE      +SS+SDVW+FGVL+WE+ S G+ PY  R+N +V+  +  G RL +P
Sbjct: 166 VKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGFRLYKP 224

>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase Itk Catalytic Domain With Thienopyrazolylindole Inhibitor 090 Length = 266

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 39/59 (66%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRP 60
            +W +PE      +SS+SDVW+FGVL+WE+ S G+ PY  R+N +V+  +  G RL +P
Sbjct: 168 VKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGFRLYKP 226

>pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed With Imidazo[1,5-A]quinoxaline Length = 267

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 39/59 (66%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRP 60
            +W +PE      +SS+SDVW+FGVL+WE+ S G+ PY  R+N +V+  +  G RL +P
Sbjct: 169 VKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGFRLYKP 227

>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52 Length = 269

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 39/59 (66%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRP 60
            +W +PE      +SS+SDVW+FGVL+WE+ S G+ PY  R+N +V+  +  G RL +P
Sbjct: 171 VKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGFRLYKP 229

>pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor Length = 286

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 39/59 (66%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRP 60
            +W +PE      +SS+SDVW+FGVL+WE+ S G+ PY  R+N +V+  +  G RL +P
Sbjct: 188 VKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGFRLYKP 246

>pdb|4ASZ|A Chain A, Crystal Structure Of Apo Trkb Kinase Domain Length = 299

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 40/61 (65%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RWM PE ++   F+++SDVW+ GV+LWEI + G+QP+   +N +V+  +  G  L RP  
Sbjct: 195 RWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNEVIECITQGRVLQRPRT 254
Query: 63  C 63
           C
Sbjct: 255 C 255

>pdb|3FZO|A Chain A, Crystal Structure Of Pyk2-Apo, Proline-Rich Tyrosine Kinase Length = 277

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 26/61 (42%), Positives = 38/61 (62%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WM+PE +    F++ SDVW F V +WEI+S G+QP+    N DV+  +  G RL +P  
Sbjct: 175 KWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLENKDVIGVLEKGDRLPKPDL 234
Query: 63  C 63
           C
Sbjct: 235 C 235

>pdb|3CC6|A Chain A, Crystal Structure Of Kinase Domain Of Protein Tyrosine Kinase 2 Beta (ptk2b) Length = 281

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 26/61 (42%), Positives = 38/61 (62%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WM+PE +    F++ SDVW F V +WEI+S G+QP+    N DV+  +  G RL +P  
Sbjct: 179 KWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLENKDVIGVLEKGDRLPKPDL 238
Query: 63  C 63
           C
Sbjct: 239 C 239

>pdb|4H1J|A Chain A, Crystal Structure Of Pyk2 With The Pyrazole 13a Length = 293

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/61 (42%), Positives = 38/61 (62%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WM+PE +    F++ SDVW F V +WEI+S G+QP+    N DV+  +  G RL +P  
Sbjct: 191 KWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLENKDVIGVLEKGDRLPKPDL 250
Query: 63  C 63
           C
Sbjct: 251 C 251

>pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase Activity Length = 286

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 38/61 (62%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE  + G F+ +SDVW+FG+LL E+ + G+ PYP   N +VL  V  G R+  P  
Sbjct: 180 KWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPE 239
Query: 63  C 63
           C
Sbjct: 240 C 240

>pdb|2HWO|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Covalent Inhibitor Length = 286

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 38/61 (62%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE  + G F+ +SDVW+FG+LL E+ + G+ PYP   N +VL  V  G R+  P  
Sbjct: 180 KWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPE 239
Query: 63  C 63
           C
Sbjct: 240 C 240

>pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src Tyrosine Kinase Domain Complexed With Imatinib Length = 286

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 38/61 (62%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE  + G F+ +SDVW+FG+LL E+ + G+ PYP   N +VL  V  G R+  P  
Sbjct: 180 KWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPE 239
Query: 63  C 63
           C
Sbjct: 240 C 240

>pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation Length = 286

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 38/61 (62%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE  + G F+ +SDVW+FG+LL E+ + G+ PYP   N +VL  V  G R+  P  
Sbjct: 180 KWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPE 239
Query: 63  C 63
           C
Sbjct: 240 C 240

>pdb|2QQ7|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain With Irreversible Inhibitor Length = 286

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 38/61 (62%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE  + G F+ +SDVW+FG+LL E+ + G+ PYP   N +VL  V  G R+  P  
Sbjct: 180 KWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPE 239
Query: 63  C 63
           C
Sbjct: 240 C 240

>pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Cgp77675 Length = 283

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 38/61 (62%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE  + G F+ +SDVW+FG+LL E+ + G+ PYP   N +VL  V  G R+  P  
Sbjct: 177 KWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPE 236
Query: 63  C 63
           C
Sbjct: 237 C 237

>pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To Vinylsulfonamide- Pyrazolopyrimidine 9 Length = 286

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 38/61 (62%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE  + G F+ +SDVW+FG+LL E+ + G+ PYP   N +VL  V  G R+  P  
Sbjct: 180 KWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPE 239
Query: 63  C 63
           C
Sbjct: 240 C 240

>pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 277

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 38/61 (62%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE  + G F+ +SDVW+FG+LL E+ + G+ PYP   N +VL  V  G R+  P  
Sbjct: 171 KWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPE 230
Query: 63  C 63
           C
Sbjct: 231 C 231

>pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In Complex With The Cancer Drug Imatinib. Length = 286

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 38/61 (62%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE  + G F+ +SDVW+FG+LL E+ + G+ PYP   N +VL  V  G R+  P  
Sbjct: 180 KWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPE 239
Query: 63  C 63
           C
Sbjct: 240 C 240

>pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451 Length = 279

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 38/61 (62%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE  + G F+ +SDVW+FG+LL E+ + G+ PYP   N +VL  V  G R+  P  
Sbjct: 173 KWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPE 232
Query: 63  C 63
           C
Sbjct: 233 C 233

>pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs Length = 286

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 38/61 (62%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE  + G F+ +SDVW+FG+LL E+ + G+ PYP   N +VL  V  G R+  P  
Sbjct: 180 KWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPE 239
Query: 63  C 63
           C
Sbjct: 240 C 240

>pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533) Length = 276

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 38/61 (62%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE  + G F+ +SDVW+FG+LL E+ + G+ PYP   N +VL  V  G R+  P  
Sbjct: 170 KWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPE 229
Query: 63  C 63
           C
Sbjct: 230 C 230

>pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor Mc4b Length = 275

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 38/61 (62%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE  + G F+ +SDVW+FG+LL E+ + G+ PYP   N +VL  V  G R+  P  
Sbjct: 169 KWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPE 228
Query: 63  C 63
           C
Sbjct: 229 C 229

>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor Length = 535

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 38/61 (62%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE  + G F+ +SDVW+FG+LL E+ + G+ PYP   N +VL  V  G R+  P  
Sbjct: 429 KWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPE 488
Query: 63  C 63
           C
Sbjct: 489 C 489

>pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain Length = 283

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 38/61 (62%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE  + G F+ +SDVW+FG+LL E+ + G+ PYP   N +VL  V  G R+  P  
Sbjct: 177 KWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPE 236
Query: 63  C 63
           C
Sbjct: 237 C 237

>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src Length = 452

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 38/61 (62%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE  + G F+ +SDVW+FG+LL E+ + G+ PYP   N +VL  V  G R+  P  
Sbjct: 346 KWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPE 405
Query: 63  C 63
           C
Sbjct: 406 C 406

>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An Inhibitor Length = 452

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 38/61 (62%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE  + G F+ +SDVW+FG+LL E+ + G+ PYP   N +VL  V  G R+  P  
Sbjct: 346 KWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPE 405
Query: 63  C 63
           C
Sbjct: 406 C 406

>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly Mutant) In Complex With N6-Benzyl Adp Length = 452

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 38/61 (62%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE  + G F+ +SDVW+FG+LL E+ + G+ PYP   N +VL  V  G R+  P  
Sbjct: 346 KWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPE 405
Query: 63  C 63
           C
Sbjct: 406 C 406

>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase Length = 453

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 38/61 (62%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE  + G F+ +SDVW+FG+LL E+ + G+ PYP   N +VL  V  G R+  P  
Sbjct: 347 KWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPE 406
Query: 63  C 63
           C
Sbjct: 407 C 407

>pdb|3BBT|B Chain B, Crystal Structure Of The Erbb4 Kinase In Complex With Lapatinib Length = 328

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 38/62 (61%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMA EC+    F+ QSDVW++GV +WE+M+ G +PY      ++   +  G RL +P  
Sbjct: 184 KWMALECIHYRKFTHQSDVWSYGVTIWELMTFGGKPYDGIPTREIPDLLEKGERLPQPPI 243
Query: 63  CS 64
           C+
Sbjct: 244 CT 245

>pdb|3G0E|A Chain A, Kit Kinase Domain In Complex With Sunitinib Length = 336

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 25/60 (41%), Positives = 39/60 (65%), Gaps = 3/60 (5%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHY--VRGGGRLNRP 60
           +WMAPE + + +++ +SDVW++G+ LWE+ SLG  PYP    VD   Y  ++ G R+  P
Sbjct: 235 KWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMP-VDSKFYKMIKEGFRMLSP 293

>pdb|3PLS|A Chain A, Ron In Complex With Ligand Amp-Pnp Length = 298

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 38/62 (61%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            +W A E L    F+++SDVW+FGVLLWE+++ G  PY      D+ H++  G RL +P 
Sbjct: 192 VKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHIDPFDLTHFLAQGRRLPQPE 251
Query: 62  NC 63
            C
Sbjct: 252 YC 253

>pdb|4HZS|A Chain A, Crystal Structure Of Ack1 Kinase Domain With C-terminal Sh3 Domain Length = 341

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYV-RGGGRLNRPAN 62
           W APE L    FS  SD W FGV LWE+ + GQ+P+       +LH + + G RL RP +
Sbjct: 184 WCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDKEGERLPRPED 243
Query: 63  CSHLI 67
           C   I
Sbjct: 244 CPQDI 248

>pdb|1U46|A Chain A, Crystal Structure Of The Unphosphorylated Kinase Domain Of The Tyrosine Kinase Ack1 Length = 291

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYV-RGGGRLNRPAN 62
           W APE L    FS  SD W FGV LWE+ + GQ+P+       +LH + + G RL RP +
Sbjct: 190 WCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDKEGERLPRPED 249
Query: 63  CSHLI 67
           C   I
Sbjct: 250 CPQDI 254

>pdb|4HZR|A Chain A, Crystal Structure Of Ack1 Kinase Domain Length = 277

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYV-RGGGRLNRPAN 62
           W APE L    FS  SD W FGV LWE+ + GQ+P+       +LH + + G RL RP +
Sbjct: 184 WCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDKEGERLPRPED 243
Query: 63  CSHLI 67
           C   I
Sbjct: 244 CPQDI 248

>pdb|1U54|A Chain A, Crystal Structures Of The Phosphorylated And Unphosphorylated Kinase Domains Of The Cdc42-Associated Tyrosine Kinase Ack1 Bound To Amp-Pcp Length = 291

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYV-RGGGRLNRPAN 62
           W APE L    FS  SD W FGV LWE+ + GQ+P+       +LH + + G RL RP +
Sbjct: 190 WCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDKEGERLPRPED 249
Query: 63  CSHLI 67
           C   I
Sbjct: 250 CPQDI 254

>pdb|3EQP|B Chain B, Crystal Structure Of Ack1 With Compound T95 Length = 276

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYV-RGGGRLNRPAN 62
           W APE L    FS  SD W FGV LWE+ + GQ+P+       +LH + + G RL RP +
Sbjct: 180 WCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDKEGERLPRPED 239
Query: 63  CSHLI 67
           C   I
Sbjct: 240 CPQDI 244

>pdb|4ID7|A Chain A, Ack1 Kinase In Complex With The Inhibitor Cis-3-[8-amino-1-(4- Phenoxyphenyl)imidazo[1,5-a]pyrazin-3-yl]cyclobutanol Length = 273

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYV-RGGGRLNRPAN 62
           W APE L    FS  SD W FGV LWE+ + GQ+P+       +LH + + G RL RP +
Sbjct: 180 WCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDKEGERLPRPED 239
Query: 63  CSHLI 67
           C   I
Sbjct: 240 CPQDI 244

>pdb|1T45|A Chain A, Structural Basis For The Autoinhibition And Sti-571 Inhibition Of C- Kit Tyrosine Kinase Length = 331

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHY--VRGGGRLNR 59
            +WMAPE + + +++ +SDVW++G+ LWE+ SLG  PYP    VD   Y  ++ G R+  
Sbjct: 229 VKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMP-VDSKFYKMIKEGFRMLS 287
Query: 60  P 60
           P
Sbjct: 288 P 288

>pdb|4EWH|B Chain B, Co-Crystal Structure Of Ack1 With Inhibitor Length = 275

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYV-RGGGRLNRPAN 62
           W APE L    FS  SD W FGV LWE+ + GQ+P+       +LH + + G RL RP +
Sbjct: 180 WCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDKEGERLPRPED 239
Query: 63  CSHLI 67
           C   I
Sbjct: 240 CPQDI 244

>pdb|3G0F|A Chain A, Kit Kinase Domain Mutant D816h In Complex With Sunitinib Length = 336

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHY--VRGGGRLNR 59
            +WMAPE + + +++ +SDVW++G+ LWE+ SLG  PYP    VD   Y  ++ G R+  
Sbjct: 234 VKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMP-VDSKFYKMIKEGFRMLS 292
Query: 60  P 60
           P
Sbjct: 293 P 293

>pdb|1T46|A Chain A, Structural Basis For The Autoinhibition And Sti-571 Inhibition Of C-kit Tyrosine Kinase Length = 313

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHY--VRGGGRLNR 59
            +WMAPE + + +++ +SDVW++G+ LWE+ SLG  PYP    VD   Y  ++ G R+  
Sbjct: 211 VKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMP-VDSKFYKMIKEGFRMLS 269
Query: 60  P 60
           P
Sbjct: 270 P 270

>pdb|2R4B|A Chain A, Erbb4 Kinase Domain Complexed With A Thienopyrimidine Inhibitor Length = 321

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 38/62 (61%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMA EC+    F+ QSDVW++GV +WE+M+ G +PY      ++   +  G RL +P  
Sbjct: 207 KWMALECIHYRKFTHQSDVWSYGVTIWELMTFGGKPYDGIPTREIPDLLEKGERLPQPPI 266
Query: 63  CS 64
           C+
Sbjct: 267 CT 268

>pdb|1PKG|A Chain A, Structure Of A C-kit Kinase Product Complex Length = 329

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHY--VRGGGRLNR 59
            +WMAPE + + +++ +SDVW++G+ LWE+ SLG  PYP    VD   Y  ++ G R+  
Sbjct: 227 VKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMP-VDSKFYKMIKEGFRMLS 285
Query: 60  P 60
           P
Sbjct: 286 P 286

>pdb|1XKK|A Chain A, Egfr Kinase Domain Complexed With A Quinazoline Inhibitor- Gw572016 Length = 352

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 39/62 (62%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMA E ++  +++ QSDVW++GV +WE+M+ G +PY      ++   +  G RL +P  
Sbjct: 209 KWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPI 268
Query: 63  CS 64
           C+
Sbjct: 269 CT 270

>pdb|2RFD|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase Domain And A Mig6 Peptide Length = 324

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 39/62 (62%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMA E ++  +++ QSDVW++GV +WE+M+ G +PY      ++   +  G RL +P  
Sbjct: 181 KWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPI 240
Query: 63  CS 64
           C+
Sbjct: 241 CT 242

>pdb|3BEL|A Chain A, X-Ray Structure Of Egfr In Complex With Oxime Inhibitor Length = 315

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 39/62 (62%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMA E ++  +++ QSDVW++GV +WE+M+ G +PY      ++   +  G RL +P  
Sbjct: 178 KWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPI 237
Query: 63  CS 64
           C+
Sbjct: 238 CT 239

>pdb|2GS2|A Chain A, Crystal Structure Of The Active Egfr Kinase Domain Length = 330

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 39/62 (62%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMA E ++  +++ QSDVW++GV +WE+M+ G +PY      ++   +  G RL +P  
Sbjct: 187 KWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPI 246
Query: 63  CS 64
           C+
Sbjct: 247 CT 248

>pdb|4I23|A Chain A, Crystal Structure Of The Wild-type Egfr Kinase Domain In Complex With Dacomitinib (soaked) Length = 329

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 39/62 (62%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMA E ++  +++ QSDVW++GV +WE+M+ G +PY      ++   +  G RL +P  
Sbjct: 186 KWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPI 245
Query: 63  CS 64
           C+
Sbjct: 246 CT 247

>pdb|4G5J|A Chain A, Crystal Structure Of Egfr Kinase In Complex With Bibw2992 Length = 330

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 39/62 (62%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMA E ++  +++ QSDVW++GV +WE+M+ G +PY      ++   +  G RL +P  
Sbjct: 187 KWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPI 246
Query: 63  CS 64
           C+
Sbjct: 247 CT 248

>pdb|2JIT|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation Length = 327

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 39/62 (62%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMA E ++  +++ QSDVW++GV +WE+M+ G +PY      ++   +  G RL +P  
Sbjct: 184 KWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPI 243
Query: 63  CS 64
           C+
Sbjct: 244 CT 245

>pdb|2J5E|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An Irreversible Inhibitor 13-Jab Length = 327

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 39/62 (62%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMA E ++  +++ QSDVW++GV +WE+M+ G +PY      ++   +  G RL +P  
Sbjct: 184 KWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPI 243
Query: 63  CS 64
           C+
Sbjct: 244 CT 245

>pdb|2J5F|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An Irreversible Inhibitor 34-Jab Length = 327

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 39/62 (62%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMA E ++  +++ QSDVW++GV +WE+M+ G +PY      ++   +  G RL +P  
Sbjct: 184 KWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPI 243
Query: 63  CS 64
           C+
Sbjct: 244 CT 245

>pdb|4I24|A Chain A, Structure Of T790m Egfr Kinase Domain Co-crystallized With Dacomitinib Length = 329

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 39/62 (62%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMA E ++  +++ QSDVW++GV +WE+M+ G +PY      ++   +  G RL +P  
Sbjct: 186 KWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPI 245
Query: 63  CS 64
           C+
Sbjct: 246 CT 247

>pdb|4G5P|A Chain A, Crystal Structure Of Egfr Kinase T790m In Complex With Bibw2992 Length = 330

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 39/62 (62%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMA E ++  +++ QSDVW++GV +WE+M+ G +PY      ++   +  G RL +P  
Sbjct: 187 KWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPI 246
Query: 63  CS 64
           C+
Sbjct: 247 CT 248

>pdb|2JIU|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In Complex With Aee788 Length = 328

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 39/62 (62%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMA E ++  +++ QSDVW++GV +WE+M+ G +PY      ++   +  G RL +P  
Sbjct: 185 KWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPI 244
Query: 63  CS 64
           C+
Sbjct: 245 CT 246

>pdb|2ITN|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In Complex With Amp-Pnp Length = 327

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 39/62 (62%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMA E ++  +++ QSDVW++GV +WE+M+ G +PY      ++   +  G RL +P  
Sbjct: 184 KWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPI 243
Query: 63  CS 64
           C+
Sbjct: 244 CT 245

>pdb|3VJO|A Chain A, Crystal Structure Of The Wild-Type Egfr Kinase Domain In Complex With Amppnp Length = 334

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 39/62 (62%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMA E ++  +++ QSDVW++GV +WE+M+ G +PY      ++   +  G RL +P  
Sbjct: 191 KWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPI 250
Query: 63  CS 64
           C+
Sbjct: 251 CT 252

>pdb|3LZB|A Chain A, Egfr Kinase Domain Complexed With An Imidazo[2,1-B]thiazole Inhibitor Length = 327

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 39/62 (62%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMA E ++  +++ QSDVW++GV +WE+M+ G +PY      ++   +  G RL +P  
Sbjct: 184 KWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPI 243
Query: 63  CS 64
           C+
Sbjct: 244 CT 245

>pdb|2JIV|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In Compex With Hki-272 Length = 328

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 39/62 (62%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMA E ++  +++ QSDVW++GV +WE+M+ G +PY      ++   +  G RL +P  
Sbjct: 185 KWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPI 244
Query: 63  CS 64
           C+
Sbjct: 245 CT 246

>pdb|4HJO|A Chain A, Crystal Structure Of The Inactive Egfr Tyrosine Kinase Domain With Erlotinib Length = 337

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 39/62 (62%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMA E ++  +++ QSDVW++GV +WE+M+ G +PY      ++   +  G RL +P  
Sbjct: 194 KWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPI 253
Query: 63  CS 64
           C+
Sbjct: 254 CT 255

>pdb|2ITT|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In Complex With Aee788 Length = 327

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 39/62 (62%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMA E ++  +++ QSDVW++GV +WE+M+ G +PY      ++   +  G RL +P  
Sbjct: 184 KWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPI 243
Query: 63  CS 64
           C+
Sbjct: 244 CT 245

>pdb|2GS7|A Chain A, Crystal Structure Of The Inactive Egfr Kinase Domain In Complex With Amp-Pnp Length = 330

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 39/62 (62%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMA E ++  +++ QSDVW++GV +WE+M+ G +PY      ++   +  G RL +P  
Sbjct: 187 KWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPI 246
Query: 63  CS 64
           C+
Sbjct: 247 CT 248

>pdb|4I21|A Chain A, Crystal Structure Of L858r + T790m Egfr Kinase Domain In Complex With Mig6 Peptide Length = 329

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 39/62 (62%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMA E ++  +++ QSDVW++GV +WE+M+ G +PY      ++   +  G RL +P  
Sbjct: 186 KWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPI 245
Query: 63  CS 64
           C+
Sbjct: 246 CT 247

>pdb|3IKA|A Chain A, Crystal Structure Of Egfr 696-1022 T790m Mutant Covalently Binding To Wz4002 Length = 331

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 39/62 (62%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMA E ++  +++ QSDVW++GV +WE+M+ G +PY      ++   +  G RL +P  
Sbjct: 188 KWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPI 247
Query: 63  CS 64
           C+
Sbjct: 248 CT 249

>pdb|3W2O|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Tak-285 Length = 331

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 39/62 (62%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMA E ++  +++ QSDVW++GV +WE+M+ G +PY      ++   +  G RL +P  
Sbjct: 188 KWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPI 247
Query: 63  CS 64
           C+
Sbjct: 248 CT 249

>pdb|3GOP|A Chain A, Crystal Structure Of The Egf Receptor Juxtamembrane And Kinase Domains Length = 361

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 39/62 (62%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMA E ++  +++ QSDVW++GV +WE+M+ G +PY      ++   +  G RL +P  
Sbjct: 218 KWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPI 277
Query: 63  CS 64
           C+
Sbjct: 278 CT 279

>pdb|3KEX|A Chain A, Crystal Structure Of The Catalytically Inactive Kinase Domain Of The Human Epidermal Growth Factor Receptor 3 (Her3) Length = 325

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 38/62 (61%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMA E +  G ++ QSDVW++GV +WE+M+ G +PY      +V   +  G RL +P  
Sbjct: 182 KWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRLAEVPDLLEKGERLAQPQI 241
Query: 63  CS 64
           C+
Sbjct: 242 CT 243

>pdb|4I20|A Chain A, Crystal Structure Of Monomeric (v948r) Primary Oncogenic Mutant L858r Egfr Kinase Domain Length = 329

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 39/62 (62%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMA E ++  +++ QSDVW++GV +WE+M+ G +PY      ++   +  G RL +P  
Sbjct: 186 KWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPI 245
Query: 63  CS 64
           C+
Sbjct: 246 CT 247

>pdb|3LMG|A Chain A, Crystal Structure Of The Erbb3 Kinase Domain In Complex With Amp-Pnp Length = 344

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 38/62 (61%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMA E +  G ++ QSDVW++GV +WE+M+ G +PY      +V   +  G RL +P  
Sbjct: 200 KWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRLAEVPDLLEKGERLAQPQI 259
Query: 63  CS 64
           C+
Sbjct: 260 CT 261

>pdb|1M14|A Chain A, Tyrosine Kinase Domain From Epidermal Growth Factor Receptor Length = 333

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 39/62 (62%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMA E ++  +++ QSDVW++GV +WE+M+ G +PY      ++   +  G RL +P  
Sbjct: 190 KWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPI 249
Query: 63  CS 64
           C+
Sbjct: 250 CT 251

>pdb|4I1Z|A Chain A, Crystal Structure Of The Monomeric (v948r) Form Of The Gefitinib/erlotinib Resistant Egfr Kinase Domain L858r+t790m Length = 329

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 39/62 (62%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMA E ++  +++ QSDVW++GV +WE+M+ G +PY      ++   +  G RL +P  
Sbjct: 186 KWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPI 245
Query: 63  CS 64
           C+
Sbjct: 246 CT 247

>pdb|2EB3|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (L858r) In Complex With Amppnp Length = 334

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 39/62 (62%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMA E ++  +++ QSDVW++GV +WE+M+ G +PY      ++   +  G RL +P  
Sbjct: 191 KWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPI 250
Query: 63  CS 64
           C+
Sbjct: 251 CT 252

>pdb|2EB2|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (G719s) Length = 334

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 39/62 (62%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMA E ++  +++ QSDVW++GV +WE+M+ G +PY      ++   +  G RL +P  
Sbjct: 191 KWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPI 250
Query: 63  CS 64
           C+
Sbjct: 251 CT 252

>pdb|3UG1|A Chain A, Crystal Structure Of The Mutated Egfr Kinase Domain (G719sT790M) IN The Apo Form Length = 334

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 39/62 (62%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMA E ++  +++ QSDVW++GV +WE+M+ G +PY      ++   +  G RL +P  
Sbjct: 191 KWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPI 250
Query: 63  CS 64
           C+
Sbjct: 251 CT 252

>pdb|3PP0|A Chain A, Crystal Structure Of The Kinase Domain Of Human Her2 (Erbb2). Length = 338

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 6/65 (9%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPY---PARTNVDVLHYVRGGGRLNR 59
           +WMA E ++   F+ QSDVW++GV +WE+M+ G +PY   PAR   D+L     G RL +
Sbjct: 186 KWMALESILRRRFTHQSDVWSYGVTVWELMTFGAKPYDGIPAREIPDLLE---KGERLPQ 242
Query: 60  PANCS 64
           P  C+
Sbjct: 243 PPICT 247

>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed With Compound 16 Length = 271

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 19/36 (52%), Positives = 28/36 (77%), Gaps = 1/36 (2%)
Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPY 39
           WMAPE +   +FS  SDVW++GVLLWE+++ G+ P+
Sbjct: 180 WMAPEVIRASMFSKGSDVWSYGVLLWELLT-GEVPF 214

>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine Inhibitor Length = 306

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 4/58 (6%)
Query: 4   WMAPECL---VDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLN 58
           WMAPE +       +S QSDV+AFG++L+E+M+ GQ PY    N D + ++ G G L+
Sbjct: 199 WMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMT-GQLPYSNINNRDQIIFMVGRGYLS 255

>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An Aminoisoquinoline Inhibitor Length = 300

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 4/58 (6%)
Query: 4   WMAPECL---VDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLN 58
           WMAPE +       +S QSDV+AFG++L+E+M+ GQ PY    N D + ++ G G L+
Sbjct: 192 WMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMT-GQLPYSNINNRDQIIFMVGRGYLS 248

>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A Tetrahydronaphthalene Inhibitor Length = 282

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 4/58 (6%)
Query: 4   WMAPECL---VDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLN 58
           WMAPE +       +S QSDV+AFG++L+E+M+ GQ PY    N D + ++ G G L+
Sbjct: 174 WMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMT-GQLPYSNINNRDQIIFMVGRGYLS 230

>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii Dihydroquinazoline Inhibitor Length = 307

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 4/58 (6%)
Query: 4   WMAPECL---VDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLN 58
           WMAPE +       +S QSDV+AFG++L+E+M+ GQ PY    N D + ++ G G L+
Sbjct: 200 WMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMT-GQLPYSNINNRDQIIFMVGRGYLS 256

>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885 Length = 281

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 4/58 (6%)
Query: 4   WMAPECL---VDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLN 58
           WMAPE +       +S QSDV+AFG++L+E+M+ GQ PY    N D + ++ G G L+
Sbjct: 177 WMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMT-GQLPYSNINNRDQIIFMVGRGYLS 233

>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase Length = 307

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 4/58 (6%)
Query: 4   WMAPECL---VDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLN 58
           WMAPE +       +S QSDV+AFG++L+E+M+ GQ PY    N D + ++ G G L+
Sbjct: 200 WMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMT-GQLPYSNINNRDQIIFMVGRGYLS 256

>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With A [1, 3]thiazolo[5,4-B]pyridine Derivative Length = 284

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 4/58 (6%)
Query: 4   WMAPECL---VDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLN 58
           WMAPE +       +S QSDV+AFG++L+E+M+ GQ PY    N D + ++ G G L+
Sbjct: 177 WMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMT-GQLPYSNINNRDQIIFMVGRGYLS 233

>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006 Length = 276

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 4/58 (6%)
Query: 4   WMAPECL---VDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLN 58
           WMAPE +       +S QSDV+AFG++L+E+M+ GQ PY    N D + ++ G G L+
Sbjct: 172 WMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMT-GQLPYSNINNRDQIIFMVGRGYLS 228

>pdb|4H58|A Chain A, Braf In Complex With Compound 3 Length = 275

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 4/58 (6%)
Query: 4   WMAPECL---VDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLN 58
           WMAPE +       +S QSDV+AFG++L+E+M+ GQ PY    N D + ++ G G L+
Sbjct: 172 WMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMT-GQLPYSNINNRDQIIFMVGRGYLS 228

>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006 Length = 276

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 4/58 (6%)
Query: 4   WMAPECL---VDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLN 58
           WMAPE +       +S QSDV+AFG++L+E+M+ GQ PY    N D + ++ G G L+
Sbjct: 172 WMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMT-GQLPYSNINNRDQIIFMVGRGYLS 228

>pdb|4HVD|A Chain A, Jak3 Kinase Domain In Complex With 2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic Acid ((s)-1,2,2-trimethyl-propyl)-amide Length = 314

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 18/30 (60%), Positives = 24/30 (80%)
Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMS 33
           W APE L D +FS QSDVW+FGV+L+E+ +
Sbjct: 183 WYAPESLSDNIFSRQSDVWSFGVVLYELFT 212

>pdb|3LXK|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2 And Jak3 Kinase Domains In Complex With Cp-690550 And Cmp-6 Length = 327

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 18/30 (60%), Positives = 24/30 (80%)
Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMS 33
           W APE L D +FS QSDVW+FGV+L+E+ +
Sbjct: 196 WYAPESLSDNIFSRQSDVWSFGVVLYELFT 225

>pdb|3PJC|A Chain A, Crystal Structure Of Jak3 Complexed With A Potent Atp Site Inhibitor Showing High Selectivity Within The Janus Kinase Family Length = 315

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 18/30 (60%), Positives = 24/30 (80%)
Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMS 33
           W APE L D +FS QSDVW+FGV+L+E+ +
Sbjct: 184 WYAPESLSDNIFSRQSDVWSFGVVLYELFT 213

>pdb|1YVJ|A Chain A, Crystal Structure Of The Jak3 Kinase Domain In Complex With A Staurosporine Analogue Length = 290

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 18/30 (60%), Positives = 24/30 (80%)
Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMS 33
           W APE L D +FS QSDVW+FGV+L+E+ +
Sbjct: 180 WYAPESLSDNIFSRQSDVWSFGVVLYELFT 209

>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx3203 Length = 292

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 4/58 (6%)
Query: 4   WMAPECL---VDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLN 58
           WMAPE +       +S QSDV+AFG++L+E+M+ GQ PY    N D +  + G G L+
Sbjct: 188 WMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMT-GQLPYSNINNRDQIIEMVGRGSLS 244

>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii Inhibtor Nvp-Bbt594 Length = 295

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 15/75 (20%)
Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPY--PA----------RTNVDVLHYV 51
           W APE L +  FS  SDVW+FGV+L+E+ +  ++    PA          +  + V H +
Sbjct: 183 WYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLI 242
Query: 52  ---RGGGRLNRPANC 63
              +  GRL RP  C
Sbjct: 243 ELLKNNGRLPRPDGC 257

>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 326

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 15/75 (20%)
Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPY--PA----------RTNVDVLHYV 51
           W APE L +  FS  SDVW+FGV+L+E+ +  ++    PA          +  + V H +
Sbjct: 214 WYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLI 273
Query: 52  ---RGGGRLNRPANC 63
              +  GRL RP  C
Sbjct: 274 ELLKNNGRLPRPDGC 288

>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx4032 Length = 289

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 4/58 (6%)
Query: 4   WMAPECL---VDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLN 58
           WMAPE +       +S QSDV+AFG++L+E+M+ GQ PY    N D +  + G G L+
Sbjct: 188 WMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMT-GQLPYSNINNRDQIIEMVGRGSLS 244

>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720 Length = 280

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 4/58 (6%)
Query: 4   WMAPECL---VDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLN 58
           WMAPE +       +S QSDV+AFG++L+E+M+ GQ PY    N D +  + G G L+
Sbjct: 176 WMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMT-GQLPYSNINNRDQIIEMVGRGSLS 232

>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2 Length = 301

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 15/75 (20%)
Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPY--PA----------RTNVDVLHYV 51
           W APE L +  FS  SDVW+FGV+L+E+ +  ++    PA          +  + V H +
Sbjct: 189 WYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLI 248
Query: 52  ---RGGGRLNRPANC 63
              +  GRL RP  C
Sbjct: 249 ELLKNNGRLPRPDGC 263

>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain Length = 298

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 15/75 (20%)
Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPY--PA----------RTNVDVLHYV 51
           W APE L +  FS  SDVW+FGV+L+E+ +  ++    PA          +  + V H +
Sbjct: 186 WYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLI 245
Query: 52  ---RGGGRLNRPANC 63
              +  GRL RP  C
Sbjct: 246 ELLKNNGRLPRPDGC 260

>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A Potent And Specific Pan-Janus Kinase Inhibitor Length = 293

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 15/75 (20%)
Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPY--PA----------RTNVDVLHYV 51
           W APE L +  FS  SDVW+FGV+L+E+ +  ++    PA          +  + V H +
Sbjct: 181 WYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLI 240
Query: 52  ---RGGGRLNRPANC 63
              +  GRL RP  C
Sbjct: 241 ELLKNNGRLPRPDGC 255

>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 15/75 (20%)
Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPY--PA----------RTNVDVLHYV 51
           W APE L +  FS  SDVW+FGV+L+E+ +  ++    PA          +  + V H +
Sbjct: 190 WYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLI 249
Query: 52  ---RGGGRLNRPANC 63
              +  GRL RP  C
Sbjct: 250 ELLKNNGRLPRPDGC 264

>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8 Length = 300

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 15/75 (20%)
Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPY--PA----------RTNVDVLHYV 51
           W APE L +  FS  SDVW+FGV+L+E+ +  ++    PA          +  + V H +
Sbjct: 188 WYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLI 247
Query: 52  ---RGGGRLNRPANC 63
              +  GRL RP  C
Sbjct: 248 ELLKNNGRLPRPDGC 262

>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2 Length = 298

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 15/75 (20%)
Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPY--PA----------RTNVDVLHYV 51
           W APE L +  FS  SDVW+FGV+L+E+ +  ++    PA          +  + V H +
Sbjct: 184 WYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLI 243
Query: 52  ---RGGGRLNRPANC 63
              +  GRL RP  C
Sbjct: 244 ELLKNNGRLPRPDGC 258

>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With Compound 7 Length = 298

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 15/75 (20%)
Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPY--PA----------RTNVDVLHYV 51
           W APE L +  FS  SDVW+FGV+L+E+ +  ++    PA          +  + V H +
Sbjct: 186 WYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLI 245
Query: 52  ---RGGGRLNRPANC 63
              +  GRL RP  C
Sbjct: 246 ELLKNNGRLPRPDGC 260

>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8 Length = 298

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 15/75 (20%)
Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPY--PA----------RTNVDVLHYV 51
           W APE L +  FS  SDVW+FGV+L+E+ +  ++    PA          +  + V H +
Sbjct: 186 WYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLI 245
Query: 52  ---RGGGRLNRPANC 63
              +  GRL RP  C
Sbjct: 246 ELLKNNGRLPRPDGC 260

>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent 2,8-Diaryl Quinoxaline Inhibitor Length = 295

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 15/75 (20%)
Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPY--PA----------RTNVDVLHYV 51
           W APE L +  FS  SDVW+FGV+L+E+ +  ++    PA          +  + V H +
Sbjct: 183 WYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLI 242
Query: 52  ---RGGGRLNRPANC 63
              +  GRL RP  C
Sbjct: 243 ELLKNNGRLPRPDGC 257

>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor Length = 303

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 15/75 (20%)
Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPY--PA----------RTNVDVLHYV 51
           W APE L +  FS  SDVW+FGV+L+E+ +  ++    PA          +  + V H +
Sbjct: 187 WYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLI 246
Query: 52  ---RGGGRLNRPANC 63
              +  GRL RP  C
Sbjct: 247 ELLKNNGRLPRPDGC 261

>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine Inhibitor Length = 301

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 15/75 (20%)
Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPY--PA----------RTNVDVLHYV 51
           W APE L +  FS  SDVW+FGV+L+E+ +  ++    PA          +  + V H +
Sbjct: 183 WYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLI 242
Query: 52  ---RGGGRLNRPANC 63
              +  GRL RP  C
Sbjct: 243 ELLKNNGRLPRPDGC 257

>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors Length = 293

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 15/75 (20%)
Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPY--PA----------RTNVDVLHYV 51
           W APE L +  FS  SDVW+FGV+L+E+ +  ++    PA          +  + V H +
Sbjct: 182 WYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLI 241
Query: 52  ---RGGGRLNRPANC 63
              +  GRL RP  C
Sbjct: 242 ELLKNNGRLPRPDGC 256

>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 20/37 (54%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPY 39
            WMAPE L D   + +SDV++FGV+LWE+ +L QQP+
Sbjct: 204 EWMAPEVLRDEPSNEKSDVYSFGVILWELATL-QQPW 239

>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective Inhibitors Of Jak2 Length = 313

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 15/75 (20%)
Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPY--PA----------RTNVDVLHYV 51
           W APE L +  FS  SDVW+FGV+L+E+ +  ++    PA          +  + V H +
Sbjct: 201 WYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLI 260
Query: 52  ---RGGGRLNRPANC 63
              +  GRL RP  C
Sbjct: 261 ELLKNNGRLPRPDGC 275

>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors Length = 311

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 15/75 (20%)
Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPY--PA----------RTNVDVLHYV 51
           W APE L +  FS  SDVW+FGV+L+E+ +  ++    PA          +  + V H +
Sbjct: 201 WYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLI 260
Query: 52  ---RGGGRLNRPANC 63
              +  GRL RP  C
Sbjct: 261 ELLKNNGRLPRPDGC 275

>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 20/37 (54%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPY 39
            WMAPE L D   + +SDV++FGV+LWE+ +L QQP+
Sbjct: 204 EWMAPEVLRDEPSNEKSDVYSFGVILWELATL-QQPW 239

>pdb|4E20|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole Inhibitor Length = 290

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 22/86 (25%)
Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSL---GQQPYPARTNVDVLHYVRG------- 53
           W APECL +  F   SDVW+FGV L+E+++     Q P+   T  +++ + +G       
Sbjct: 180 WYAPECLKECKFYYASDVWSFGVTLYELLTYCDSNQSPHTKFT--ELIGHTQGQMTVLRL 237
Query: 54  ------GGRLNRPANCS----HLIRS 69
                 G RL RP  C     HL+++
Sbjct: 238 TELLERGERLPRPDRCPCEIYHLMKN 263

>pdb|4E1Z|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole Inhibitor Length = 291

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 22/86 (25%)
Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSL---GQQPYPARTNVDVLHYVRG------- 53
           W APECL +  F   SDVW+FGV L+E+++     Q P+   T  +++ + +G       
Sbjct: 181 WYAPECLKECKFYYASDVWSFGVTLYELLTYCDSNQSPHTKFT--ELIGHTQGQMTVLRL 238
Query: 54  ------GGRLNRPANCS----HLIRS 69
                 G RL RP  C     HL+++
Sbjct: 239 TELLERGERLPRPDRCPCEIYHLMKN 264

>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1) Length = 307

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 4/55 (7%)
Query: 4   WMAPECL---VDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG 55
           WMAPE +    +  FS QSDV+++G++L+E+M+ G+ PY    N D + ++ G G
Sbjct: 200 WMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMT-GELPYSHINNRDQIIFMVGRG 253

>pdb|3LXN|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2 And Jak3 Kinase Domains In Complex With Cp-690550 And Cmp-6 Length = 318

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 18/84 (21%)
Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSL--GQQPYPAR------------TNVDVLH 49
           W APECL +  F   SDVW+FGV L+E+++     Q  P +            T + +  
Sbjct: 203 WYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIGIAQGQMTVLRLTE 262
Query: 50  YVRGGGRLNRPANCS----HLIRS 69
            +  G RL RP  C     HL+++
Sbjct: 263 LLERGERLPRPDKCPAEVYHLMKN 286

>pdb|3NZ0|A Chain A, Non-Phosphorylated Tyk2 Kinase With Cmp6 Length = 302

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 18/84 (21%)
Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSL--GQQPYPAR------------TNVDVLH 49
           W APECL +  F   SDVW+FGV L+E+++     Q  P +            T + +  
Sbjct: 186 WYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIGIAQGQMTVLRLTE 245
Query: 50  YVRGGGRLNRPANCS----HLIRS 69
            +  G RL RP  C     HL+++
Sbjct: 246 LLERGERLPRPDKCPCEVYHLMKN 269

>pdb|3NYX|A Chain A, Non-Phosphorylated Tyk2 Jh1 Domain With Quinoline-Thiadiazole- Thiophene Inhibitor Length = 302

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 18/84 (21%)
Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSL--GQQPYPAR------------TNVDVLH 49
           W APECL +  F   SDVW+FGV L+E+++     Q  P +            T + +  
Sbjct: 186 WYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIGIAQGQMTVLRLTE 245
Query: 50  YVRGGGRLNRPANCS----HLIRS 69
            +  G RL RP  C     HL+++
Sbjct: 246 LLERGERLPRPDKCPCEVYHLMKN 269

>pdb|1XJD|A Chain A, Crystal Structure Of Pkc-Theta Complexed With Staurosporine At 2a Resolution Length = 345

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVR 52
           ++APE L+   ++   D W+FGVLL+E++ +GQ P+  +   ++ H +R
Sbjct: 184 YIAPEILLGQKYNHSVDWWSFGVLLYEML-IGQSPFHGQDEEELFHSIR 231

>pdb|2JED|A Chain A, The Crystal Structure Of The Kinase Domain Of The Protein Kinase C Theta In Complex With Nvp-Xaa228 At 2.32a Resolution. Length = 352

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVR 52
           ++APE L+   ++   D W+FGVLL+E++ +GQ P+  +   ++ H +R
Sbjct: 185 YIAPEILLGQKYNHSVDWWSFGVLLYEML-IGQSPFHGQDEEELFHSIR 232

>pdb|4E4L|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMS 33
           W APECL+   F   SDVW+FGV L E+++
Sbjct: 195 WYAPECLMQSKFYIASDVWSFGVTLHELLT 224

>pdb|3EYG|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes Length = 290

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMS 33
           W APECL+   F   SDVW+FGV L E+++
Sbjct: 183 WYAPECLMQSKFYIASDVWSFGVTLHELLT 212

>pdb|2C30|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 6 Length = 321

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 15/49 (30%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVR 52
           WMAPE +   L++++ D+W+ G+++ E++  G+ PY + + V  +  +R
Sbjct: 207 WMAPEVISRSLYATEVDIWSLGIMVIEMVD-GEPPYFSDSPVQAMKRLR 254

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	88
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	7e-38
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	1e-37
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	2e-37
3v5q_A	297	NT-3 growth factor receptor; kinase domain, kinase	2e-37
4aoj_A	329	High affinity nerve growth factor receptor; transf	2e-37
3zzw_A	289	Tyrosine-protein kinase transmembrane receptor RO;	2e-37
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	3e-37
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	3e-37
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	3e-37
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	5e-37
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	7e-37
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	8e-37
3pls_A	298	Macrophage-stimulating protein receptor; protein k	1e-36
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	3e-36
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	4e-36
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	5e-36
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	5e-36
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	7e-35
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	7e-35
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	1e-34
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	1e-34
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	1e-34
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	2e-34
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	3e-34
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	8e-34
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	9e-34
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	1e-33
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	2e-33
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	2e-33
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	3e-33
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	3e-33
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	4e-33
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	8e-33
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	1e-32
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	1e-32
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	1e-32
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	2e-32
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	2e-32
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	3e-32
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	2e-31
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	3e-31
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	4e-31
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	6e-31
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	7e-31
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	2e-29
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	4e-29
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	7e-29
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	2e-28
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	2e-28
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	2e-28
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	2e-28
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	6e-28
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	1e-27
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	2e-19
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	8e-18
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	2e-16
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	8e-16
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	2e-15
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	9e-15
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	5e-14
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	1e-13
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	4e-13
3soc_A	322	Activin receptor type-2A; structural genomics cons	3e-09
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	5e-08
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	5e-08
3q4u_A	301	Activin receptor type-1; structural genomics conso	8e-08
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	9e-08
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	4e-07
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	4e-07
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	5e-06
3fme_A	290	Dual specificity mitogen-activated protein kinase;	5e-06
3an0_A	340	Dual specificity mitogen-activated protein kinase;	8e-06
2dyl_A	318	Dual specificity mitogen-activated protein kinase	8e-06
3aln_A	327	Dual specificity mitogen-activated protein kinase;	1e-05
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	1e-05
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	3e-05
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	3e-05
2a19_B	284	Interferon-induced, double-stranded RNA-activated	4e-05
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	5e-05
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	6e-05
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	7e-05
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	7e-05
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	7e-05
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	9e-05
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	1e-04
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	1e-04
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	1e-04
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	1e-04
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	1e-04
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	2e-04
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	2e-04
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	2e-04
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	2e-04
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	2e-04
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	2e-04
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	2e-04
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	2e-04
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	3e-04
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	3e-04
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	3e-04
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	3e-04
3pvu_A	695	Beta-adrenergic receptor kinase 1; transferase, se	3e-04
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	3e-04
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	4e-04
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	5e-04
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	5e-04
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	6e-04
3g51_A	325	Ribosomal protein S6 kinase alpha-3; N-terminal ki	8e-04

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343

 Score =  128 bits (323), Expect = 7e-38
 Identities = 30/65 (46%), Positives = 42/65 (64%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RWM PE +    ++++SDVWA+GV+LWEI S G QPY    + +V++YVR G  L  P N
Sbjct: 241 RWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMAHEEVIYYVRDGNILACPEN 300

Query: 63  CSHLI 67
           C   +
Sbjct: 301 CPLEL 305

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322

 Score =  126 bits (319), Expect = 1e-37
 Identities = 34/65 (52%), Positives = 48/65 (73%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RWM+PE L DG+F++ SDVW+FGV+LWEI +L +QPY   +N  VL +V  GG L++P N
Sbjct: 205 RWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDKPDN 264

Query: 63  CSHLI 67
           C  ++
Sbjct: 265 CPDML 269

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327

 Score =  126 bits (319), Expect = 2e-37
 Identities = 33/65 (50%), Positives = 49/65 (75%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WM PE  ++G+F+S++D W+FGVLLWEI SLG  PYP+++N +VL +V  GGR++ P N
Sbjct: 210 KWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMDPPKN 269

Query: 63  CSHLI 67
           C   +
Sbjct: 270 CPGPV 274

>3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297

 Score =  125 bits (317), Expect = 2e-37
 Identities = 27/65 (41%), Positives = 42/65 (64%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RWM PE ++   F+++SDVW+FGV+LWEI + G+QP+   +N +V+  +  G  L RP  
Sbjct: 200 RWMPPESIMYRKFTTESDVWSFGVILWEIFTYGKQPWFQLSNTEVIECITQGRVLERPRV 259

Query: 63  CSHLI 67
           C   +
Sbjct: 260 CPKEV 264

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329

 Score =  126 bits (318), Expect = 2e-37
 Identities = 26/65 (40%), Positives = 41/65 (63%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RWM PE ++   F+++SDVW+FGV+LWEI + G+QP+   +N + +  +  G  L RP  
Sbjct: 225 RWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTEAIDCITQGRELERPRA 284

Query: 63  CSHLI 67
           C   +
Sbjct: 285 CPPEV 289

>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289

 Score =  125 bits (316), Expect = 2e-37
 Identities = 29/65 (44%), Positives = 41/65 (63%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RWMAPE ++ G FS  SD+W++GV+LWE+ S G QPY   +N DV+  +R    L  P +
Sbjct: 195 RWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQDVVEMIRNRQVLPCPDD 254

Query: 63  CSHLI 67
           C   +
Sbjct: 255 CPAWV 259

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313

 Score =  125 bits (316), Expect = 3e-37
 Identities = 28/65 (43%), Positives = 42/65 (64%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W+A E L D +++S+SDVWAFGV +WEI + G  PYP   N ++  Y+  G RL +P +
Sbjct: 214 KWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQNHEMYDYLLHGHRLKQPED 273

Query: 63  CSHLI 67
           C   +
Sbjct: 274 CLDEL 278

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323

 Score =  125 bits (317), Expect = 3e-37
 Identities = 30/65 (46%), Positives = 42/65 (64%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W+A E L D L++  SDVWAFGV +WEIM+ GQ PY    N ++ +Y+ GG RL +P  
Sbjct: 204 KWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIENAEIYNYLIGGNRLKQPPE 263

Query: 63  CSHLI 67
           C   +
Sbjct: 264 CMEEV 268

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314

 Score =  125 bits (316), Expect = 3e-37
 Identities = 31/62 (50%), Positives = 44/62 (70%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMA E L D ++++QSDVW+FGVLLWEI++LG  PYP      + + ++ G R+ RP N
Sbjct: 217 KWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIPPERLFNLLKTGHRMERPDN 276

Query: 63  CS 64
           CS
Sbjct: 277 CS 278

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298

 Score =  124 bits (314), Expect = 5e-37
 Identities = 29/65 (44%), Positives = 40/65 (61%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMA E L    F+++SDVW+FGVLLWE+M+ G  PYP     D+  Y+  G RL +P  
Sbjct: 197 KWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEY 256

Query: 63  CSHLI 67
           C   +
Sbjct: 257 CPDPL 261

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367

 Score =  125 bits (317), Expect = 7e-37
 Identities = 33/65 (50%), Positives = 49/65 (75%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WM PE  ++G+F+S++D W+FGVLLWEI SLG  PYP+++N +VL +V  GGR++ P N
Sbjct: 251 KWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMDPPKN 310

Query: 63  CSHLI 67
           C   +
Sbjct: 311 CPGPV 315

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334

 Score =  125 bits (315), Expect = 8e-37
 Identities = 30/62 (48%), Positives = 45/62 (72%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMAPE L D +++ QSDVW+FGVL+WEI +LG  PYP     ++   ++ G R+++PAN
Sbjct: 224 KWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLLKEGHRMDKPAN 283

Query: 63  CS 64
           C+
Sbjct: 284 CT 285

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298

 Score =  123 bits (312), Expect = 1e-36
 Identities = 26/65 (40%), Positives = 39/65 (60%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W A E L    F+++SDVW+FGVLLWE+++ G  PY      D+ H++  G RL +P  
Sbjct: 193 KWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHIDPFDLTHFLAQGRRLPQPEY 252

Query: 63  CSHLI 67
           C   +
Sbjct: 253 CPDSL 257

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382

 Score =  124 bits (313), Expect = 3e-36
 Identities = 30/62 (48%), Positives = 45/62 (72%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMAPE L D +++ QSDVW+FGVLLWEI +LG  PYP     ++   ++ G R+++P+N
Sbjct: 258 KWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSN 317

Query: 63  CS 64
           C+
Sbjct: 318 CT 319

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370

 Score =  124 bits (312), Expect = 4e-36
 Identities = 30/62 (48%), Positives = 45/62 (72%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMAPE L D +++ QSDVW+FGVL+WEI +LG  PYP     ++   ++ G R+++PAN
Sbjct: 270 KWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLLKEGHRMDKPAN 329

Query: 63  CS 64
           C+
Sbjct: 330 CT 331

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373

 Score =  123 bits (311), Expect = 5e-36
 Identities = 29/65 (44%), Positives = 40/65 (61%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMA E L    F+++SDVW+FGVLLWE+M+ G  PYP     D+  Y+  G RL +P  
Sbjct: 261 KWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEY 320

Query: 63  CSHLI 67
           C   +
Sbjct: 321 CPDPL 325

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327

 Score =  122 bits (309), Expect = 5e-36
 Identities = 29/62 (46%), Positives = 40/62 (64%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RWMA E L   ++++ SDVW++GVLLWEI+SLG  PY   T  ++   +  G RL +P N
Sbjct: 206 RWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYRLEKPLN 265

Query: 63  CS 64
           C 
Sbjct: 266 CD 267

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327

 Score =  120 bits (302), Expect = 7e-35
 Identities = 22/62 (35%), Positives = 39/62 (62%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMA E ++  +++ QSDVW++GV +WE+M+ G +PY      ++   +  G RL +P  
Sbjct: 184 KWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPI 243

Query: 63  CS 64
           C+
Sbjct: 244 CT 245

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316

 Score =  119 bits (301), Expect = 7e-35
 Identities = 28/63 (44%), Positives = 41/63 (65%), Gaps = 1/63 (1%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPA-RTNVDVLHYVRGGGRLNRPA 61
           +WMAPE + D +++ QSDVW+FGVLLWEI SLG  PYP  + + +    ++ G R+  P 
Sbjct: 215 KWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPD 274

Query: 62  NCS 64
             +
Sbjct: 275 YTT 277

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281

 Score =  118 bits (297), Expect = 1e-34
 Identities = 26/61 (42%), Positives = 38/61 (62%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WM+PE +    F++ SDVW F V +WEI+S G+QP+    N DV+  +  G RL +P  
Sbjct: 179 KWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLENKDVIGVLEKGDRLPKPDL 238

Query: 63  C 63
           C
Sbjct: 239 C 239

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 Length = 344

 Score =  119 bits (300), Expect = 1e-34
 Identities = 25/63 (39%), Positives = 43/63 (68%), Gaps = 1/63 (1%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPA-RTNVDVLHYVRGGGRLNRPA 61
           +WMAPE L +G+++ +SDVW++G+LLWEI SLG  PYP    + +    ++ G ++++P 
Sbjct: 239 KWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPVDANFYKLIQNGFKMDQPF 298

Query: 62  NCS 64
             +
Sbjct: 299 YAT 301

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333

 Score =  119 bits (300), Expect = 1e-34
 Identities = 29/66 (43%), Positives = 41/66 (62%), Gaps = 1/66 (1%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYP-ARTNVDVLHYVRGGGRLNRPA 61
           +WMAPE + D +++ QSDVW++G+LLWEI SLG  PYP    N      V+ G ++ +PA
Sbjct: 231 KWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILVNSKFYKLVKDGYQMAQPA 290

Query: 62  NCSHLI 67
                I
Sbjct: 291 FAPKNI 296

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313

 Score =  118 bits (298), Expect = 2e-34
 Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPAR-TNVDVLHYVRGGGRLNRPA 61
           +WMAPE + + +++ +SDVW++G+ LWE+ SLG  PYP    +      ++ G R+  P 
Sbjct: 212 KWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPE 271

Query: 62  NCSHLI 67
           +    +
Sbjct: 272 HAPAEM 277

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281

 Score =  116 bits (294), Expect = 3e-34
 Identities = 28/65 (43%), Positives = 38/65 (58%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMAPE +    F+S SDVW FGV +WEI+  G +P+    N DV+  +  G RL  P N
Sbjct: 182 KWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLPMPPN 241

Query: 63  CSHLI 67
           C   +
Sbjct: 242 CPPTL 246

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283

 Score =  116 bits (292), Expect = 8e-34
 Identities = 32/65 (49%), Positives = 41/65 (63%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RW  PE L+   FSS+SD+WAFGVL+WEI SLG+ PY   TN +   ++  G RL RP  
Sbjct: 186 RWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRLYRPHL 245

Query: 63  CSHLI 67
            S  +
Sbjct: 246 ASEKV 250

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279

 Score =  115 bits (291), Expect = 9e-34
 Identities = 29/65 (44%), Positives = 43/65 (66%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE +  G F+ +SDVW+FG+LL EI++ G+ PYP  TN +V+  +  G R+ RP N
Sbjct: 175 KWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDN 234

Query: 63  CSHLI 67
           C   +
Sbjct: 235 CPEEL 239

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268

 Score =  115 bits (290), Expect = 1e-33
 Identities = 31/62 (50%), Positives = 40/62 (64%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE      +SS+SDVWAFG+L+WE+ SLG+ PY   TN +V+  V  G RL RP  
Sbjct: 170 KWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTNSEVVLKVSQGHRLYRPHL 229

Query: 63  CS 64
            S
Sbjct: 230 AS 231

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score =  114 bits (289), Expect = 2e-33
 Identities = 29/65 (44%), Positives = 41/65 (63%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE L +  FS++SDVW+FG+LLWEI S G+ PYP     DV+  V  G +++ P  
Sbjct: 179 KWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKMDAPDG 238

Query: 63  CSHLI 67
           C   +
Sbjct: 239 CPPAV 243

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267

 Score =  114 bits (288), Expect = 2e-33
 Identities = 27/62 (43%), Positives = 40/62 (64%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W +PE      +SS+SDVW+FGVL+WE+ S G+ PY  R+N +V+  +  G RL +P  
Sbjct: 170 KWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGFRLYKPRL 229

Query: 63  CS 64
            S
Sbjct: 230 AS 231

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289

 Score =  114 bits (288), Expect = 3e-33
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 3   RWMAPECLVDG-LFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            W+ PEC+ +    +  +D W+FG  LWEI S G +P  A  +   L +     +L  P 
Sbjct: 182 PWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSALDSQRKLQFYEDRHQLPAPK 241

Query: 62  NC 63
             
Sbjct: 242 AA 243

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327

 Score =  115 bits (290), Expect = 3e-33
 Identities = 22/62 (35%), Positives = 39/62 (62%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMA E ++  +++ QSDVW++GV +WE+M+ G +PY      ++   +  G RL +P  
Sbjct: 184 KWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPI 243

Query: 63  CS 64
           C+
Sbjct: 244 CT 245

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288

 Score =  114 bits (287), Expect = 4e-33
 Identities = 29/65 (44%), Positives = 35/65 (53%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE L    FS +SDVWAFGVLLWEI + G  PYP      V   +    R+ RP  
Sbjct: 177 KWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPEG 236

Query: 63  CSHLI 67
           C   +
Sbjct: 237 CPEKV 241

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score =  115 bits (290), Expect = 8e-33
 Identities = 32/61 (52%), Positives = 39/61 (63%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE L  G +SS+SDVW+FG+LLWE  SLG  PYP  +N     +V  GGRL  P  
Sbjct: 280 KWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLSNQQTREFVEKGGRLPCPEL 339

Query: 63  C 63
           C
Sbjct: 340 C 340

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333

 Score =  114 bits (287), Expect = 1e-32
 Identities = 26/61 (42%), Positives = 41/61 (67%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RW APE +    F+S SDVW+FG+++WE+M+ G++PY   +N +V+  +  G RL  P +
Sbjct: 215 RWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNHEVMKAINDGFRLPTPMD 274

Query: 63  C 63
           C
Sbjct: 275 C 275

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656

 Score =  117 bits (294), Expect = 1e-32
 Identities = 28/65 (43%), Positives = 38/65 (58%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMAPE +    F+S SDVW FGV +WEI+  G +P+    N DV+  +  G RL  P N
Sbjct: 557 KWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLPMPPN 616

Query: 63  CSHLI 67
           C   +
Sbjct: 617 CPPTL 621

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325

 Score =  113 bits (286), Expect = 1e-32
 Identities = 24/62 (38%), Positives = 38/62 (61%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMA E +  G ++ QSDVW++GV +WE+M+ G +PY      +V   +  G RL +P  
Sbjct: 182 KWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRLAEVPDLLEKGERLAQPQI 241

Query: 63  CS 64
           C+
Sbjct: 242 CT 243

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291

 Score =  112 bits (283), Expect = 2e-32
 Identities = 29/62 (46%), Positives = 38/62 (61%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APEC+    FSS+SDVW+FGVL+WE  S GQ+PY      +V   +  G R+  PA 
Sbjct: 185 KWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMGCPAG 244

Query: 63  CS 64
           C 
Sbjct: 245 CP 246

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287

 Score =  112 bits (282), Expect = 2e-32
 Identities = 26/62 (41%), Positives = 39/62 (62%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APEC+    FSS+SDVW++GV +WE +S GQ+PY      +V+ ++  G R+  P  
Sbjct: 178 KWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQGKRMECPPE 237

Query: 63  CS 64
           C 
Sbjct: 238 CP 239

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325

 Score =  112 bits (283), Expect = 3e-32
 Identities = 30/62 (48%), Positives = 40/62 (64%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RW APE +    FSS SDVW+FGV++WE+++ G++PY   TN DV+  V  G RL  P  
Sbjct: 219 RWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNMTNRDVISSVEEGYRLPAPMG 278

Query: 63  CS 64
           C 
Sbjct: 279 CP 280

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A* 3hng_A* Length = 359

 Score =  111 bits (279), Expect = 2e-31
 Identities = 28/66 (42%), Positives = 42/66 (63%), Gaps = 1/66 (1%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPA-RTNVDVLHYVRGGGRLNRPA 61
           +WMAPE + D +++ QSDVW+FGVLLWEI SLG  PYP  + + +    ++ G R+  P 
Sbjct: 260 KWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPD 319

Query: 62  NCSHLI 67
             +  +
Sbjct: 320 YTTPEM 325

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score =  112 bits (281), Expect = 3e-31
 Identities = 29/65 (44%), Positives = 41/65 (63%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE L +  FS++SDVW+FG+LLWEI S G+ PYP     DV+  V  G +++ P  
Sbjct: 351 KWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKMDAPDG 410

Query: 63  CSHLI 67
           C   +
Sbjct: 411 CPPAV 415

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373

 Score =  110 bits (278), Expect = 4e-31
 Identities = 28/61 (45%), Positives = 41/61 (67%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RW +PE +    F+S SDVW++G++LWE+MS G++PY   +N DV+  V  G RL  P +
Sbjct: 215 RWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSNQDVIKAVDEGYRLPPPMD 274

Query: 63  C 63
           C
Sbjct: 275 C 275

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score =  111 bits (279), Expect = 6e-31
 Identities = 28/62 (45%), Positives = 42/62 (67%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE +  G F+ +SDVW+FG+LL EI++ G+ PYP  +N +V+  +  G R+ RP N
Sbjct: 350 KWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVIRALERGYRMPRPEN 409

Query: 63  CS 64
           C 
Sbjct: 410 CP 411

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291

 Score =  108 bits (272), Expect = 7e-31
 Identities = 27/63 (42%), Positives = 35/63 (55%), Gaps = 1/63 (1%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYV-RGGGRLNRPA 61
            W APE L    FS  SD W FGV LWE+ + GQ+P+       +LH + + G RL RP 
Sbjct: 189 AWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDKEGERLPRPE 248

Query: 62  NCS 64
           +C 
Sbjct: 249 DCP 251

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score =  108 bits (271), Expect = 2e-29
 Identities = 26/61 (42%), Positives = 39/61 (63%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APEC+    FSS+SDVW++GV +WE +S GQ+PY      +V+ ++  G R+  P  
Sbjct: 504 KWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQGKRMECPPE 563

Query: 63  C 63
           C
Sbjct: 564 C 564

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score =  104 bits (262), Expect = 4e-29
 Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 14/76 (18%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQ--------------PYPARTNVDVL 48
            W APECL +  F   SDVW+FGV L+E+++                       T + + 
Sbjct: 202 FWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIGIAQGQMTVLRLT 261

Query: 49  HYVRGGGRLNRPANCS 64
             +  G RL RP  C 
Sbjct: 262 ELLERGERLPRPDKCP 277

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score =  105 bits (265), Expect = 7e-29
 Identities = 27/62 (43%), Positives = 38/62 (61%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE  + G F+ +SDVW+FG+LL E+ + G+ PYP   N +VL  V  G R+  P  
Sbjct: 346 KWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPE 405

Query: 63  CS 64
           C 
Sbjct: 406 CP 407

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score =  105 bits (263), Expect = 2e-28
 Identities = 29/62 (46%), Positives = 34/62 (54%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE L    FS +SDVWAFGVLLWEI + G  PYP      V   +    R+ RP  
Sbjct: 384 KWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPEG 443

Query: 63  CS 64
           C 
Sbjct: 444 CP 445

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score =  103 bits (258), Expect = 2e-28
 Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 14/77 (18%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPY--------------PARTNVDVL 48
            W APE L D +FS QSDVW+FGV+L+E+ +   +                       +L
Sbjct: 195 FWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSAEFLRMMGCERDVPALSRLL 254

Query: 49  HYVRGGGRLNRPANCSH 65
             +  G RL  P  C  
Sbjct: 255 ELLEEGQRLPAPPACPA 271

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302

 Score =  102 bits (256), Expect = 2e-28
 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 14/76 (18%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQ--------------PYPARTNVDVL 48
            W APECL+   F   SDVW+FGV L E+++                   +   T   ++
Sbjct: 194 FWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTRLV 253

Query: 49  HYVRGGGRLNRPANCS 64
           + ++ G RL  P NC 
Sbjct: 254 NTLKEGKRLPCPPNCP 269

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score =  104 bits (262), Expect = 2e-28
 Identities = 27/62 (43%), Positives = 38/62 (61%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APE  + G F+ +SDVW+FG+LL E+ + G+ PYP   N +VL  V  G R+  P  
Sbjct: 429 KWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPE 488

Query: 63  CS 64
           C 
Sbjct: 489 CP 490

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295

 Score =  101 bits (253), Expect = 6e-28
 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 15/78 (19%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMS---------------LGQQPYPARTNVDV 47
            W APE L +  FS  SDVW+FGV+L+E+ +               +G           +
Sbjct: 182 FWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHL 241

Query: 48  LHYVRGGGRLNRPANCSH 65
           +  ++  GRL RP  C  
Sbjct: 242 IELLKNNGRLPRPDGCPD 259

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326

 Score =  101 bits (253), Expect = 1e-27
 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 15/78 (19%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMS---------------LGQQPYPARTNVDV 47
            W APE L +  FS  SDVW+FGV+L+E+ +               +G           +
Sbjct: 213 FWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHL 272

Query: 48  LHYVRGGGRLNRPANCSH 65
           +  ++  GRL RP  C  
Sbjct: 273 IELLKNNGRLPRPDGCPD 290

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score = 78.9 bits (195), Expect = 2e-19
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQ-QPYPARTNVDVLHYVRGGGRLNRPA 61
            WMAPE +    +  + DV++FG++L EI+      P      +D    VRG      P 
Sbjct: 187 YWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFGLNVRGFLDRYCPP 246

Query: 62  NC 63
           NC
Sbjct: 247 NC 248

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score = 73.8 bits (182), Expect = 8e-18
 Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 6/72 (8%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYV-RGGGRLNRPA 61
            WMAPE +   +FS  SDVW++GVLLWE+++ G+ P+     + V + V      L  P+
Sbjct: 179 AWMAPEVIRASMFSKGSDVWSYGVLLWELLT-GEVPFRGIDGLAVAYGVAMNKLALPIPS 237

Query: 62  NC----SHLIRS 69
            C    + L+  
Sbjct: 238 TCPEPFAKLMED 249

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score = 70.8 bits (174), Expect = 2e-16
 Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 6/72 (8%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYV-RGGGRLNRPA 61
            WMAPE L D   + +SDV++FGV+LWE+ +  QQP+       V+  V     RL  P 
Sbjct: 204 EWMAPEVLRDEPSNEKSDVYSFGVILWELAT-LQQPWGNLNPAQVVAAVGFKCKRLEIPR 262

Query: 62  NC----SHLIRS 69
           N     + +I  
Sbjct: 263 NLNPQVAAIIEG 274

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score = 67.7 bits (166), Expect = 2e-15
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 3/69 (4%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYP--ARTNVDVLHYVRGGGRLNRP 60
            WMAPE      +S + DV+++G++LWE+++  ++P+         ++  V  G R    
Sbjct: 168 AWMAPEVFEGSNYSEKCDVFSWGIILWEVIT-RRKPFDEIGGPAFRIMWAVHNGTRPPLI 226

Query: 61  ANCSHLIRS 69
            N    I S
Sbjct: 227 KNLPKPIES 235

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score = 65.8 bits (161), Expect = 9e-15
 Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 9/69 (13%)

Query: 3   RWMAPECL---VDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVD-VLHYVRGGGR-- 56
            WMAPE +       +S QSDV+AFG++L+E+M+ GQ PY    N D ++  V  G    
Sbjct: 187 LWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMT-GQLPYSNINNRDQIIEMVGRGSLSP 245

Query: 57  --LNRPANC 63
                 +NC
Sbjct: 246 DLSKVRSNC 254

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score = 63.9 bits (156), Expect = 5e-14
 Identities = 16/76 (21%), Positives = 37/76 (48%), Gaps = 10/76 (13%)

Query: 3   RWMAPECLV--DGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHY---VRGGGRL 57
           +WMAPE +   +  ++ ++D ++F ++L+ I++ G+ P+   +   +         G R 
Sbjct: 191 QWMAPETIGAEEESYTEKADTYSFAMILYTILT-GEGPFDEYSYGKIKFINMIREEGLRP 249

Query: 58  NRPANC----SHLIRS 69
             P +C     ++I  
Sbjct: 250 TIPEDCPPRLRNVIEL 265

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score = 62.6 bits (153), Expect = 1e-13
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 5/71 (7%)

Query: 3   RWMAPECLVD---GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYV-RGGGRLN 58
            W+APE L           +D+W+F VLLWE+++  + P+   +N+++   V   G R  
Sbjct: 173 AWVAPEALQKKPEDTNRRSADMWSFAVLLWELVT-REVPFADLSNMEIGMKVALEGLRPT 231

Query: 59  RPANCSHLIRS 69
            P   S  +  
Sbjct: 232 IPPGISPHVSK 242

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score = 61.6 bits (150), Expect = 4e-13
 Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 11/77 (14%)

Query: 3   RWMAPECL---------VDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRG 53
             +APE +             FS  SDV+A G + +E+ +  + P+  +    ++  +  
Sbjct: 199 CHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHA-REWPFKTQPAEAIIWQMGT 257

Query: 54  GGRLNRP-ANCSHLIRS 69
           G + N         I  
Sbjct: 258 GMKPNLSQIGMGKEISD 274

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score = 50.9 bits (122), Expect = 3e-09
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 3   RWMAPECLVDGL-----FSSQSDVWAFGVLLWEIMSLGQQPY 39
           R+MAPE L   +        + D++A G++LWE+ S      
Sbjct: 198 RYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELAS-RCTAA 238

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score = 47.5 bits (113), Expect = 5e-08
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 6/37 (16%)

Query: 3   RWMAPECLVDGL------FSSQSDVWAFGVLLWEIMS 33
           R+MAPE L D +         ++D++A G++ WEI  
Sbjct: 216 RYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIAR 252

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score = 46.6 bits (111), Expect = 8e-08
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 6/37 (16%)

Query: 3   RWMAPECL------VDGLFSSQSDVWAFGVLLWEIMS 33
           R+MAPE L             + D+WAFG++LWE+  
Sbjct: 182 RYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVAR 218

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score = 46.7 bits (111), Expect = 9e-08
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 6/37 (16%)

Query: 3   RWMAPECLVDGLFSS------QSDVWAFGVLLWEIMS 33
           R+M PE L + L  +       +D+++FG++LWE+  
Sbjct: 211 RYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVAR 247

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360

 Score = 44.8 bits (106), Expect = 4e-07
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +M+PE L    +S QSD+W+ G+ L E M++G+ P P     ++          +    
Sbjct: 196 YMSPERLQGTHYSVQSDIWSMGLSLVE-MAVGRYPIPPPDAKELELMFGCQVEGDAAET 253

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score = 44.4 bits (105), Expect = 4e-07
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 7/45 (15%)

Query: 3   RWMAPECLVDGL-------FSSQSDVWAFGVLLWEIMSLGQQPYP 40
           R+MAPE L   +          Q D++A G++ WEI       +P
Sbjct: 193 RYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFP 237

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 41.6 bits (98), Expect = 5e-06
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVL 48
           +MAPE + +  +    DV+AFG+ + E M+  + PY    N   +
Sbjct: 196 FMAPE-MYEEKYDESVDVYAFGMCMLE-MATSEYPYSECQNAAQI 238

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290

 Score = 41.5 bits (98), Expect = 5e-06
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 6/53 (11%)

Query: 4   WMAPE----CLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNV-DVLHYV 51
           +MAPE     L    +S +SD+W+ G+ + E +++ + PY +       L  V
Sbjct: 175 YMAPERINPELNQKGYSVKSDIWSLGITMIE-LAILRFPYDSWGTPFQQLKQV 226

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318

 Score = 41.2 bits (97), Expect = 8e-06
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 7/54 (12%)

Query: 4   WMAPE-----CLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPA-RTNVDVLHYV 51
           +MAPE           +  ++DVW+ G+ L E ++ GQ PY   +T+ +VL  V
Sbjct: 190 YMAPERIDPPDPTKPDYDIRADVWSLGISLVE-LATGQFPYKNCKTDFEVLTKV 242

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327

 Score = 40.4 bits (95), Expect = 1e-05
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 6/53 (11%)

Query: 4   WMAPE----CLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNV-DVLHYV 51
           +MAPE          +  +SDVW+ G+ L+E ++ G+ PYP   +V D L  V
Sbjct: 191 YMAPERIDPSASRQGYDVRSDVWSLGITLYE-LATGRFPYPKWNSVFDQLTQV 242

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score = 40.2 bits (95), Expect = 1e-05
 Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 2/34 (5%)

Query: 5   MAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQP 38
           MAPE L  G  + +SD+++FGV+L EI++ G   
Sbjct: 202 MAPEAL-RGEITPKSDIYSFGVVLLEIIT-GLPA 233

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 39.8 bits (93), Expect = 3e-05
 Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 4/60 (6%)

Query: 4   WMAPECLVDGLFSSQS---DVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRP 60
           W+APE L +    + +   D+++ G + + ++S G  P+           + G   L+  
Sbjct: 192 WIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQRQAN-ILLGACSLDCL 250

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 39.3 bits (92), Expect = 3e-05
 Identities = 11/40 (27%), Positives = 27/40 (67%), Gaps = 1/40 (2%)

Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPART 43
           +++PE   +  ++++SD+WA G +L+E+ +L +  + A +
Sbjct: 191 YLSPEICENKPYNNKSDIWALGCVLYELCTL-KHAFEAGS 229

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 38.8 bits (91), Expect = 4e-05
 Identities = 8/36 (22%), Positives = 21/36 (58%)

Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPY 39
           +M+PE +    +  + D++A G++L E++ +    +
Sbjct: 187 YMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAF 222

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 38.8 bits (91), Expect = 5e-05
 Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPART 43
           R+MAPE L    + + +DV++ G+ + E+    + P+    
Sbjct: 221 RYMAPELLQGS-YGTAADVFSLGLTILEVACNMELPHGGEG 260

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 38.4 bits (90), Expect = 6e-05
 Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 5   MAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGG 54
           M+PE +    ++ +SD+W+ G LL+E+ +L   P+ A +  ++   +R G
Sbjct: 183 MSPEQMNRMSYNEKSDIWSLGCLLYELCAL-MPPFTAFSQKELAGKIREG 231

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A Length = 674

 Score = 38.5 bits (89), Expect = 7e-05
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 5   MAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPART 43
           +APE +    +    D WAFGVLL+E M  GQ P+    
Sbjct: 509 IAPEIIAYQPYGKSVDWWAFGVLLYE-MLAGQAPFEGED 546

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A* Length = 345

 Score = 38.3 bits (90), Expect = 7e-05
 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 5   MAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPART 43
           +APE L+   ++   D W+FGVLL+E M +GQ P+  + 
Sbjct: 185 IAPEILLGQKYNHSVDWWSFGVLLYE-MLIGQSPFHGQD 222

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score = 38.5 bits (90), Expect = 7e-05
 Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 2/50 (4%)

Query: 5   MAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGG 54
           +APE L    +  + DVW+ GV+L+ +++ G  P+  +T+ ++L  V  G
Sbjct: 205 IAPEVL-RKKYDEKCDVWSIGVILFILLA-GYPPFGGQTDQEILRKVEKG 252

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A* Length = 353

 Score = 38.0 bits (89), Expect = 9e-05
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 5   MAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPART 43
           +APE +    +    D WAFGVLL+E M  GQ P+    
Sbjct: 188 IAPEIIAYQPYGKSVDWWAFGVLLYE-MLAGQAPFEGED 225

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score = 38.1 bits (89), Expect = 1e-04
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 5   MAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGG 54
           +APE L  G +  + DVW+ GV+L+ ++S G  P+      D+L  V  G
Sbjct: 195 IAPEVL-HGTYDEKCDVWSTGVILYILLS-GCPPFNGANEYDILKKVEKG 242

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens} Length = 353

 Score = 38.0 bits (89), Expect = 1e-04
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 5   MAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPART 43
           +APE L + L+    D WA GVLL+E M  G  P+ A  
Sbjct: 191 IAPEILQEMLYGPAVDWWAMGVLLYE-MLCGHAPFEAEN 228

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 37.7 bits (88), Expect = 1e-04
 Identities = 13/38 (34%), Positives = 26/38 (68%), Gaps = 1/38 (2%)

Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPA 41
           +M+PE + +  ++ +SD+W+ G LL+E+ +L Q P+  
Sbjct: 202 YMSPERIHENGYNFKSDIWSLGCLLYEMAAL-QSPFYG 238

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B Length = 543

 Score = 37.8 bits (88), Expect = 1e-04
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 5   MAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPAR 42
           MAPE L+   +    D +A GV L+E M   + P+ AR
Sbjct: 356 MAPELLLGEEYDFSVDYFALGVTLYE-MIAARGPFRAR 392

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score = 37.7 bits (87), Expect = 1e-04
 Identities = 13/82 (15%), Positives = 23/82 (28%), Gaps = 13/82 (15%)

Query: 4   WMAPECL-----VDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLN 58
             A   L        L +   D W  G+ ++ I      P      +    ++    + N
Sbjct: 278 TTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWIWC-ADLPNTDDAALGGSEWIFRSCK-N 335

Query: 59  RPANCSHLIRS------RNRLT 74
            P     L+         +RL 
Sbjct: 336 IPQPVRALLEGFLRYPKEDRLL 357

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus} Length = 396

 Score = 37.3 bits (87), Expect = 2e-04
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 5   MAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVD 46
           +APE L    +    D WA GVL++E M  G+ P+    + D
Sbjct: 220 IAPEILRGEDYGFSVDWWALGVLMFE-MMAGRSPFDIVGSSD 260

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score = 37.4 bits (86), Expect = 2e-04
 Identities = 15/87 (17%), Positives = 32/87 (36%), Gaps = 4/87 (4%)

Query: 5   MAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA--- 61
           +APE L    ++   D W+FG L +E ++ G +P+         H               
Sbjct: 190 LAPELLEQKKYTVTVDYWSFGTLAFECIT-GFRPFLPNWQPVQWHGKVREKSNEHIVVYD 248

Query: 62  NCSHLIRSRNRLTENKAPSAVSKKRIH 88
           + +  ++  + L      S +   ++ 
Sbjct: 249 DLTGAVKFSSVLPTPNHLSGILAGKLE 275

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* Length = 576

 Score = 37.5 bits (87), Expect = 2e-04
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 5   MAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPAR 42
           MAPE + +  ++   D WA G LL+E M  GQ P+  R
Sbjct: 352 MAPEVVKNERYTFSPDWWALGCLLYE-MIAGQSPFQQR 388

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A* Length = 373

 Score = 36.9 bits (86), Expect = 2e-04
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 5   MAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVL 48
           +APE L    +    D W  G +L+E M  G  P+ +R N   +
Sbjct: 206 LAPEVLHKQPYDRTVDWWCLGAVLYE-MLYGLPPFYSR-NTAEM 247

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score = 37.0 bits (86), Expect = 2e-04
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 2/50 (4%)

Query: 5   MAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGG 54
           +APE L  G +  + DVW+ GV+L+ ++S G  P+  +   D+L  V  G
Sbjct: 190 IAPEVL-RGTYDEKCDVWSAGVILYILLS-GTPPFYGKNEYDILKRVETG 237

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 37.0 bits (86), Expect = 2e-04
 Identities = 14/36 (38%), Positives = 25/36 (69%), Gaps = 1/36 (2%)

Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPY 39
           WMAPE +   L++++ D+W+ G+++ E M  G+ PY
Sbjct: 207 WMAPEVISRSLYATEVDIWSLGIMVIE-MVDGEPPY 241

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 36.9 bits (86), Expect = 2e-04
 Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPY 39
           WMAPE +    + S++D+W+ G+   E ++ G+ P+
Sbjct: 185 WMAPEVIKQSAYDSKADIWSLGITAIE-LARGEPPH 219

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* Length = 446

 Score = 37.0 bits (86), Expect = 2e-04
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)

Query: 5   MAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVL 48
           +APE L D  +    D W  GV+++E M  G+ P+  + + + L
Sbjct: 316 LAPEVLEDNDYGRAVDWWGLGVVMYE-MMCGRLPFYNQ-DHEKL 357

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A* Length = 345

 Score = 36.8 bits (86), Expect = 3e-04
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 5   MAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVD 46
           +APE L    +    D WA GVL++E M  G+ P+    + D
Sbjct: 177 IAPEILRGEDYGFSVDWWALGVLMFE-MMAGRSPFDIVGSSD 217

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score = 36.9 bits (85), Expect = 3e-04
 Identities = 14/87 (16%), Positives = 24/87 (27%), Gaps = 19/87 (21%)

Query: 5   MAPECLVD-----------GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRG 53
             PE                L +   D WA G++++ I      P      +    ++  
Sbjct: 269 EPPELEARRATISYHRDRRTLMTFSFDAWALGLVIYWIWC-ADLPITKDAALGGSEWIF- 326

Query: 54  GGRLNRPANCSHLIRS------RNRLT 74
               N P     L+         +RL 
Sbjct: 327 RSCKNIPQPVRALLEGFLRYPKEDRLL 353

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ... Length = 337

 Score = 36.8 bits (86), Expect = 3e-04
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)

Query: 5   MAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVL 48
           +APE L D  +    D W  GV+++E M  G+ P+  + + + L
Sbjct: 172 LAPEVLEDNDYGRAVDWWGLGVVMYE-MMCGRLPFYNQ-DHERL 213

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score = 36.4 bits (85), Expect = 3e-04
 Identities = 14/35 (40%), Positives = 25/35 (71%), Gaps = 1/35 (2%)

Query: 5   MAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPY 39
           +APE L  G  S ++DV+ +GV+L E+++ GQ+ +
Sbjct: 202 IAPEYLSTGKSSEKTDVFGYGVMLLELIT-GQRAF 235

>3pvu_A Beta-adrenergic receptor kinase 1; transferase, serine/threonine-protein kinase, ATP-binding, I membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A* 3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A* 1bak_A Length = 695

 Score = 36.4 bits (84), Expect = 3e-04
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 5   MAPECLVDGLFSSQS-DVWAFGVLLWEIMSLGQQPYPARTNVD 46
           MAPE L  G+    S D ++ G +L++ +  G  P+      D
Sbjct: 357 MAPEVLQKGVAYDSSADWFSLGCMLFK-LLRGHSPFRQHKTKD 398

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score = 36.6 bits (85), Expect = 3e-04
 Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 2/50 (4%)

Query: 5   MAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGG 54
           +APE L    ++ + DVW+ GV+++ ++  G  P+  + + D++  V  G
Sbjct: 215 IAPEVL-KKKYNEKCDVWSCGVIMYILLC-GYPPFGGQNDQDIIKKVEKG 262

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 36.1 bits (84), Expect = 4e-04
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPY 39
           WMAPE +    +  + D+W+ G++  E M  G+ PY
Sbjct: 182 WMAPEVVTRKAYGPKVDIWSLGIMAIE-MIEGEPPY 216

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314

 Score = 36.2 bits (84), Expect = 5e-04
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPY 39
           WMAPE + +  ++  +D+W+ G+   E M+ G+ PY
Sbjct: 191 WMAPEVIQEIGYNCVADIWSLGITAIE-MAEGKPPY 225

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score = 35.9 bits (83), Expect = 5e-04
 Identities = 11/50 (22%), Positives = 24/50 (48%), Gaps = 7/50 (14%)

Query: 4   WMAPECLVDGLF-------SSQSDVWAFGVLLWEIMSLGQQPYPARTNVD 46
           W APE L +          +   D+++ G + + I+S G+ P+  + + +
Sbjct: 198 WRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKYSRE 247

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A* Length = 327

 Score = 35.6 bits (83), Expect = 6e-04
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 2/44 (4%)

Query: 5   MAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVL 48
           MAPE L+    +   D W+ G L+++ M  G  P+    N    
Sbjct: 188 MAPEILMRSGHNRAVDWWSLGALMYD-MLTGAPPFTGE-NRKKT 229

>3g51_A Ribosomal protein S6 kinase alpha-3; N-terminal kinase domain of P90 ribosomal S6 kinase 2, ATP- binding, nucleotide-binding, phosphoprotein; HET: ANP; 1.80A {Mus musculus} PDB: 2z7q_A* 2z7r_A* 2z7s_A* Length = 325

 Score = 35.6 bits (83), Expect = 8e-04
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 5   MAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVL 48
           MAPE +     +  +D W+FGVL++E M  G  P+  + +    
Sbjct: 193 MAPEVVNRRGHTQSADWWSFGVLMFE-MLTGTLPFQGK-DRKET 234

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	88
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	99.88
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	99.87
4aoj_A	329	High affinity nerve growth factor receptor; transf	99.87
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	99.86
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	99.85
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	99.84
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	99.84
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	99.84
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	99.84
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	99.83
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	99.82
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.81
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.79
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	99.76
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.76
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	99.73
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	99.71
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	99.71
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	99.7
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	99.7
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	99.7
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	99.7
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	99.7
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	99.69
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	99.69
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	99.69
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	99.69
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	99.69
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	99.68
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	99.68
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	99.68
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	99.68
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	99.68
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	99.68
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	99.68
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	99.67
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	99.67
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	99.67
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	99.67
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	99.67
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	99.67
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	99.67
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	99.67
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	99.67
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	99.67
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	99.67
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	99.66
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	99.66
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	99.66
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.66
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	99.66
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	99.66
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	99.66
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	99.66
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	99.66
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	99.66
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	99.65
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	99.65
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	99.65
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	99.65
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	99.65
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	99.65
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	99.65
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	99.65
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.65
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	99.65
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	99.65
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.65
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	99.65
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	99.65
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	99.65
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	99.64
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	99.64
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	99.64
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	99.64
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	99.64
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	99.64
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	99.64
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	99.64
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	99.64
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	99.64
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	99.64
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	99.64
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	99.64
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	99.64
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	99.64
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	99.64
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	99.64
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	99.64
3niz_A	311	Rhodanese family protein; structural genomics, str	99.64
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	99.64
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	99.63
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	99.63
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	99.63
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	99.63
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	99.63
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	99.63
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	99.63
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	99.63
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	99.63
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	99.63
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	99.63
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	99.63
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	99.63
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	99.63
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	99.63
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	99.62
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	99.62
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	99.62
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	99.62
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	99.62
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	99.62
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	99.62
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	99.62
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	99.62
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	99.62
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	99.62
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	99.62
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	99.61
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	99.61
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	99.61
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	99.61
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	99.61
3pls_A	298	Macrophage-stimulating protein receptor; protein k	99.61
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	99.61
3o0g_A	292	Cell division protein kinase 5; kinase activator c	99.61
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	99.61
3ork_A	311	Serine/threonine protein kinase; structural genomi	99.61
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	99.61
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	99.61
3bhy_A	283	Death-associated protein kinase 3; death associate	99.61
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	99.61
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	99.61
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	99.6
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.6
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	99.6
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	99.6
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	99.6
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	99.6
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	99.6
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	99.6
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	99.6
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	99.6
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	99.6
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	99.59
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	99.59
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	99.59
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	99.59
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	99.59
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	99.59
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	99.59
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	99.59
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	99.58
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	99.58
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	99.58
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	99.58
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	99.58
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	99.58
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	99.58
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	99.58
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	99.58
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	99.58
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	99.58
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	99.58
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	99.58
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	99.58
3soc_A	322	Activin receptor type-2A; structural genomics cons	99.57
2dyl_A	318	Dual specificity mitogen-activated protein kinase	99.57
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	99.57
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	99.57
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	99.57
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	99.57
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.57
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	99.57
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	99.57
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	99.57
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	99.57
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	99.56
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	99.56
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	99.56
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	99.56
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	99.56
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	99.56
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	99.56
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	99.56
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	99.56
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	99.56
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	99.56
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	99.55
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	99.55
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	99.55
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	99.55
3fme_A	290	Dual specificity mitogen-activated protein kinase;	99.55
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	99.55
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	99.55
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	99.55
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	99.55
3an0_A	340	Dual specificity mitogen-activated protein kinase;	99.54
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	99.54
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	99.54
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	99.53
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	99.53
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	99.53
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	99.52
3q4u_A	301	Activin receptor type-1; structural genomics conso	99.52
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	99.52
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	99.52
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	99.52
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	99.52
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	99.51
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	99.51
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	99.5
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	99.5
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	99.5
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	99.5
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	99.49
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	99.49
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	99.49
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	99.49
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	99.49
3aln_A	327	Dual specificity mitogen-activated protein kinase;	99.49
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	99.48
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	99.48
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	99.48
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	99.48
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	99.47
2a19_B	284	Interferon-induced, double-stranded RNA-activated	99.47
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	99.46
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	99.46
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	99.46
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	99.45
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	99.44
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	99.44
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	99.44
3rp9_A	458	Mitogen-activated protein kinase; structural genom	99.44
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	99.43
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	99.43
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	99.42
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	99.41
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	99.4
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	99.4
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	99.37
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	99.37
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.33
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	99.23
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	99.18
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	99.18
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.87
3uqc_A	286	Probable conserved transmembrane protein; structur	98.87
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	98.22
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	83.25

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=99.88  E-value=3.1e-22  Score=107.13  Aligned_cols=85  Identities=36%  Similarity=0.701  Sum_probs=73.7

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCChH----HHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPANCSH----LIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~----~~~~~l~~~~~~   77 (88)
                      +.|||||.+....|+.++|+||+|+++|++++.|..||.+....++...+..+.+++.|..++.    ++..|+..+|.+
T Consensus       211 ~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~~~~~~~i~~~~~~~~p~~~~~~~~~li~~C~~~dP~~  290 (308)
T 4gt4_A          211 IRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQDVVEMIRNRQVLPCPDDCPAWVYALMIECWNEFPSR  290 (308)
T ss_dssp             GGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGG
T ss_pred             CcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCcccchHHHHHHHHHHcCCChhH
Confidence            5799999999999999999999999999999868999999999999999988877777777765    455677777899


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||++.++.+
T Consensus       291 RPs~~ei~~  299 (308)
T 4gt4_A          291 RPRFKDIHS  299 (308)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHHH
Confidence            999999864

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=99.87  E-value=5.1e-22  Score=105.92  Aligned_cols=85  Identities=32%  Similarity=0.668  Sum_probs=73.4

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCChH----HHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPANCSH----LIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~----~~~~~l~~~~~~   77 (88)
                      +.|||||.+....|+.++|+||+|+++|++++.|..||.+.+..++...+..+.+++.|..++.    ++..|+..+|.+
T Consensus       194 ~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~~~~~~i~~~~~~~~p~~~~~~~~~li~~cl~~dP~~  273 (299)
T 4asz_A          194 IRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNEVIECITQGRVLQRPRTCPQEVYELMLGCWQREPHM  273 (299)
T ss_dssp             GGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGG
T ss_pred             hhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCCCCCCccchHHHHHHHHHHcCCChhH
Confidence            5799999999999999999999999999999768999999999999999988877766766654    566677788999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      |||+.++.+
T Consensus       274 RPs~~~i~~  282 (299)
T 4asz_A          274 RKNIKGIHT  282 (299)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHHH
Confidence            999998854

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=99.87  E-value=1e-21  Score=105.89  Aligned_cols=85  Identities=33%  Similarity=0.718  Sum_probs=73.1

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCChH----HHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPANCSH----LIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~----~~~~~l~~~~~~   77 (88)
                      +.|||||.+....|+.++|+||+|+++|++++.|..||.+....++...+..+.+++.|..+++    ++..|+..+|.+
T Consensus       224 ~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~~~~~~i~~g~~~~~p~~~~~~~~~li~~cl~~dP~~  303 (329)
T 4aoj_A          224 IRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTEAIDCITQGRELERPRACPPEVYAIMRGCWQREPQQ  303 (329)
T ss_dssp             GGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHHHHHHHHHHTCCCCCCTTCCHHHHHHHHHHCCSSTTT
T ss_pred             ccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCCCCCcccccHHHHHHHHHHcCcChhH
Confidence            5799999999999999999999999999999768999999898899999988877777776655    555677777899


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      |||+.++.+
T Consensus       304 RPs~~ei~~  312 (329)
T 4aoj_A          304 RHSIKDVHA  312 (329)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHHH
Confidence            999999864

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=99.86  E-value=2.5e-21  Score=104.97  Aligned_cols=85  Identities=18%  Similarity=0.325  Sum_probs=73.2

Q ss_pred             CCcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCC----ChHHHHHHHhhCcc
Q psy8478           1 MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN----CSHLIRSRNRLTEN   76 (88)
Q Consensus         1 ~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~l~~~~~   76 (88)
                      ++.|+|||++.+..|+.++|+||+|+++|++++ |..||.+.+..++...+..+..++.+..    +.+++.+||..+|.
T Consensus       188 T~~YmAPE~l~~~~y~~~~DiwSlGvilyemlt-G~~PF~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~li~~~L~~dP~  266 (350)
T 4b9d_A          188 TPYYLSPEICENKPYNNKSDIWALGCVLYELCT-LKHAFEAGSMKNLVLKIISGSFPPVSLHYSYDLRSLVSQLFKRNPR  266 (350)
T ss_dssp             CCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHH-SSCSCCCSSHHHHHHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGG
T ss_pred             CccccCHHHHCCCCCCcHHHHHHHHHHHHHHHH-CCCCCCCcCHHHHHHHHHcCCCCCCCccCCHHHHHHHHHHccCChh
Confidence            478999999998899999999999999999999 9999999998888888877655444444    55678889999999


Q ss_pred             cCCChhhhhh
Q psy8478          77 KAPSAVSKKR   86 (88)
Q Consensus        77 ~rp~~~~~~~   86 (88)
                      +|||++++++
T Consensus       267 ~R~s~~e~l~  276 (350)
T 4b9d_A          267 DRPSVNSILE  276 (350)
T ss_dssp             GSCCHHHHHT
T ss_pred             HCcCHHHHhc
Confidence            9999999864

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=99.85  E-value=1.8e-21  Score=105.42  Aligned_cols=85  Identities=16%  Similarity=0.377  Sum_probs=72.3

Q ss_pred             CCcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCC------CCCChHHHHHHHhhC
Q psy8478           1 MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNR------PANCSHLIRSRNRLT   74 (88)
Q Consensus         1 ~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~l~~~   74 (88)
                      ++.|+|||++....|+.++|+||+|+++|++++ |..||.+.+..+....+..+..+..      +..+.+++.+||..+
T Consensus       233 Tp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~-G~~PF~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~dli~~~L~~d  311 (346)
T 4fih_A          233 TPYWMAPELISRLPYGPEVDIWSLGIMVIEMVD-GEPPYFNEPPLKAMKMIRDNLPPRLKNLHKVSPSLKGFLDRLLVRD  311 (346)
T ss_dssp             CGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHH-SSCTTTTSCHHHHHHHHHHSSCCCCSCGGGSCHHHHHHHHHHSCSS
T ss_pred             CcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHH-CCCCCCCcCHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHcCCC
Confidence            468999999998899999999999999999999 9999999888888888876643322      234567888999999


Q ss_pred             cccCCChhhhhh
Q psy8478          75 ENKAPSAVSKKR   86 (88)
Q Consensus        75 ~~~rp~~~~~~~   86 (88)
                      |.+|||++++++
T Consensus       312 P~~R~ta~e~l~  323 (346)
T 4fih_A          312 PAQRATAAELLK  323 (346)
T ss_dssp             TTTSCCHHHHTT
T ss_pred             hhHCcCHHHHhc
Confidence            999999999865

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=99.84  E-value=6.3e-21  Score=105.48  Aligned_cols=85  Identities=16%  Similarity=0.377  Sum_probs=72.3

Q ss_pred             CCcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCC------CCCCChHHHHHHHhhC
Q psy8478           1 MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLN------RPANCSHLIRSRNRLT   74 (88)
Q Consensus         1 ~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~l~~~   74 (88)
                      ++.|||||++....|+.++|+|++|+++|++++ |..||.+.+..+....+..+..+.      .+..+.+++..||..+
T Consensus       310 Tp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~-G~~PF~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~dli~~~L~~d  388 (423)
T 4fie_A          310 TPYWMAPELISRLPYGPEVDIWSLGIMVIEMVD-GEPPYFNEPPLKAMKMIRDNLPPRLKNLHKVSPSLKGFLDRLLVRD  388 (423)
T ss_dssp             CTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHH-SSCTTTTSCHHHHHHHHHHSCCCCCSCTTSSCHHHHHHHHHHSCSS
T ss_pred             CcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHH-CCCCCCCcCHHHHHHHHHcCCCCCCcccccCCHHHHHHHHHHcCCC
Confidence            468999999998899999999999999999999 999999999888888887654322      2234567888999999


Q ss_pred             cccCCChhhhhh
Q psy8478          75 ENKAPSAVSKKR   86 (88)
Q Consensus        75 ~~~rp~~~~~~~   86 (88)
                      |.+|||++++++
T Consensus       389 P~~R~ta~ell~  400 (423)
T 4fie_A          389 PAQRATAAELLK  400 (423)
T ss_dssp             TTTSCCHHHHTT
T ss_pred             hhHCcCHHHHhc
Confidence            999999999865

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=99.84  E-value=9.4e-21  Score=102.96  Aligned_cols=85  Identities=34%  Similarity=0.681  Sum_probs=69.6

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCC-HHHHHHHHHcCCCCCCCCCChH----HHHHHHhhCcc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPART-NVDVLHYVRGGGRLNRPANCSH----LIRSRNRLTEN   76 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~----~~~~~l~~~~~   76 (88)
                      +.|||||.+.+..|+.++|+||+|+++|++++.|..||.+.. ...+...+..+.+++.|..+++    ++..|+..+|.
T Consensus       251 ~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~~~~~~~~~i~~g~~~~~p~~~~~~~~~li~~c~~~dP~  330 (353)
T 4ase_A          251 LKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPS  330 (353)
T ss_dssp             GGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGG
T ss_pred             ccccCHHHHhcCCCCCcccEeehHHHHHHHHhCCCCCCCCCCHHHHHHHHHHcCCCCCCCccCCHHHHHHHHHHcCcChh
Confidence            579999999999999999999999999999876899998765 4555666777777777776654    55567777899


Q ss_pred             cCCChhhhhh
Q psy8478          77 KAPSAVSKKR   86 (88)
Q Consensus        77 ~rp~~~~~~~   86 (88)
                      +|||+.++.+
T Consensus       331 ~RPt~~eil~  340 (353)
T 4ase_A          331 QRPTFSELVE  340 (353)
T ss_dssp             GSCCHHHHHH
T ss_pred             HCcCHHHHHH
Confidence            9999999865

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=99.84  E-value=5.5e-21  Score=102.32  Aligned_cols=82  Identities=18%  Similarity=0.368  Sum_probs=70.3

Q ss_pred             CCcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCC----CChHHHHHHHhhCcc
Q psy8478           1 MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA----NCSHLIRSRNRLTEN   76 (88)
Q Consensus         1 ~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~l~~~~~   76 (88)
                      ++.|||||++.+..|+.++|+||+|+++|++++ |..||.+.+..++...|..+. ...|.    .+.+++.+||..+|.
T Consensus       197 Tp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~-G~~PF~~~~~~~~~~~i~~~~-~~~p~~~s~~~~dli~~lL~~dp~  274 (311)
T 4aw0_A          197 TAQYVSPELLTEKSACKSSDLWALGCIIYQLVA-GLPPFRAGNEGLIFAKIIKLE-YDFPEKFFPKARDLVEKLLVLDAT  274 (311)
T ss_dssp             CGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHH-SSCSSCCSSHHHHHHHHHHTC-CCCCTTCCHHHHHHHHHHSCSSGG
T ss_pred             CcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHh-CCCCCCCCCHHHHHHHHHcCC-CCCCcccCHHHHHHHHHHccCCHh
Confidence            468999999998899999999999999999999 999999988888888887653 23333    455788899999999


Q ss_pred             cCCChhhh
Q psy8478          77 KAPSAVSK   84 (88)
Q Consensus        77 ~rp~~~~~   84 (88)
                      +|||++++
T Consensus       275 ~R~t~~e~  282 (311)
T 4aw0_A          275 KRLGCEEM  282 (311)
T ss_dssp             GSTTSGGG
T ss_pred             HCcChHHH
Confidence            99999986

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=99.84  E-value=1e-20  Score=99.91  Aligned_cols=84  Identities=19%  Similarity=0.371  Sum_probs=69.4

Q ss_pred             CCcccCcchhccCCC-CchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCC----CCChHHHHHHHhhCc
Q psy8478           1 MTRWMAPECLVDGLF-SSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRP----ANCSHLIRSRNRLTE   75 (88)
Q Consensus         1 ~~~~~~pe~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~l~~~~   75 (88)
                      ++.|+|||++.+..| +.++|+||+|++++++++ |..||.+.+..++...+..+. ...|    ..+.+++.+||..+|
T Consensus       174 T~~Y~APE~~~~~~y~~~~~DiwSlGvily~llt-g~~PF~~~~~~~~~~~i~~~~-~~~p~~~s~~~~~li~~~L~~dP  251 (275)
T 3hyh_A          174 SPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLC-RRLPFDDESIPVLFKNISNGV-YTLPKFLSPGAAGLIKRMLIVNP  251 (275)
T ss_dssp             -CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHH-SSCSSCCSSHHHHHHHHHHTC-CCCCTTSCHHHHHHHHHHSCSSG
T ss_pred             CcccCChhhhcCCCCCCChhhhHHHHHHHHHHHH-CCCCCCCCCHHHHHHHHHcCC-CCCCCCCCHHHHHHHHHHccCCh
Confidence            468999999988776 578999999999999999 999999888888888887653 2233    345678888999999


Q ss_pred             ccCCChhhhhh
Q psy8478          76 NKAPSAVSKKR   86 (88)
Q Consensus        76 ~~rp~~~~~~~   86 (88)
                      .+|||++++.+
T Consensus       252 ~~R~s~~eil~  262 (275)
T 3hyh_A          252 LNRISIHEIMQ  262 (275)
T ss_dssp             GGSCCHHHHHH
T ss_pred             hHCcCHHHHHc
Confidence            99999999865

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=99.83  E-value=4.9e-21  Score=103.42  Aligned_cols=85  Identities=16%  Similarity=0.268  Sum_probs=68.5

Q ss_pred             CCcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC--CCCC----CChHHHHHHHhhC
Q psy8478           1 MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRL--NRPA----NCSHLIRSRNRLT   74 (88)
Q Consensus         1 ~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~----~~~~~~~~~l~~~   74 (88)
                      ++.|||||++.+..|+.++|+|++|+++|++++ |..||.+....++...+..+..+  ..+.    .+.+++..||..+
T Consensus       219 T~~YmAPE~~~~~~y~~~~DiwSlGvilyemlt-G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~~li~~~L~~d  297 (336)
T 4g3f_A          219 TETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLN-GCHPWTQYFRGPLCLKIASEPPPIREIPPSCAPLTAQAIQEGLRKE  297 (336)
T ss_dssp             CGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHH-SSCSSTTTCCSCCHHHHHHSCCGGGGSCTTSCHHHHHHHHHHTCSS
T ss_pred             CccccCHHHHCCCCCCcHHHHHHHHHHHHHHHH-CcCCCCCCCHHHHHHHHHcCCCCchhcCccCCHHHHHHHHHHccCC
Confidence            467999999998899999999999999999999 99999877666666666554321  2233    3456788889999


Q ss_pred             cccCCChhhhhh
Q psy8478          75 ENKAPSAVSKKR   86 (88)
Q Consensus        75 ~~~rp~~~~~~~   86 (88)
                      |.+|||+.++.+
T Consensus       298 P~~R~sa~el~~  309 (336)
T 4g3f_A          298 PVHRASAMELRR  309 (336)
T ss_dssp             GGGSCCHHHHHH
T ss_pred             HhHCcCHHHHHH
Confidence            999999999854

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=99.82  E-value=2.8e-20  Score=99.42  Aligned_cols=79  Identities=23%  Similarity=0.486  Sum_probs=67.5

Q ss_pred             CCcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCC----CCChHHHHHHHhhCcc
Q psy8478           1 MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRP----ANCSHLIRSRNRLTEN   76 (88)
Q Consensus         1 ~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~l~~~~~   76 (88)
                      ++.|+|||.+.+..|+.++|+||+|+++|++++ |..||.+.+..++...+..+. +..|    ..+.+++.+||..+|.
T Consensus       189 T~~YmAPE~~~~~~y~~~~DiwSlGvilyemlt-G~~PF~~~~~~~~~~~i~~~~-~~~p~~~s~~~~~li~~~L~~dP~  266 (304)
T 3ubd_A          189 TVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLT-GTLPFQGKDRKETMTMILKAK-LGMPQFLSPEAQSLLRMLFKRNPA  266 (304)
T ss_dssp             CGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHH-SSCSSCCSSHHHHHHHHHHCC-CCCCTTSCHHHHHHHHHHTCSSGG
T ss_pred             CcccCCHHHhccCCCCCCCcccchHHHHHHHHh-CCCCCCCcCHHHHHHHHHcCC-CCCCCcCCHHHHHHHHHHcccCHH
Confidence            478999999998899999999999999999999 999999999888888887653 2333    3456788889999999


Q ss_pred             cCCCh
Q psy8478          77 KAPSA   81 (88)
Q Consensus        77 ~rp~~   81 (88)
                      +|||+
T Consensus       267 ~R~ta  271 (304)
T 3ubd_A          267 NRLGA  271 (304)
T ss_dssp             GSTTC
T ss_pred             HCCCC
Confidence            99995

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=99.81  E-value=1.6e-19  Score=96.06  Aligned_cols=84  Identities=20%  Similarity=0.336  Sum_probs=65.6

Q ss_pred             CCcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCC-HHHHHHHHHcCCCCC-C----CCCChHHHHHHHhhC
Q psy8478           1 MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPART-NVDVLHYVRGGGRLN-R----PANCSHLIRSRNRLT   74 (88)
Q Consensus         1 ~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~-~----~~~~~~~~~~~l~~~   74 (88)
                      ++.|||||.+.+ .|+.++|+||+|++++++++ |..||.+.. ...+...+..+..+. .    +..+.+++..||..+
T Consensus       193 Tp~YmAPE~~~~-~y~~~~DiwSlGvilyellt-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~~L~~d  270 (290)
T 3fpq_A          193 TPEFMAPEMYEE-KYDESVDVYAFGMCMLEMAT-SEYPYSECQNAAQIYRRVTSGVKPASFDKVAIPEVKEIIEGCIRQN  270 (290)
T ss_dssp             SCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHH-SSCTTTTCSSHHHHHHHHTTTCCCGGGGGCCCHHHHHHHHHHSCSS
T ss_pred             CccccCHHHcCC-CCCcHHHHHHHHHHHHHHHH-CCCCCCCCCcHHHHHHHHHcCCCCCCCCccCCHHHHHHHHHHccCC
Confidence            478999998864 69999999999999999999 999997654 455555665554321 2    234567888999999


Q ss_pred             cccCCChhhhhh
Q psy8478          75 ENKAPSAVSKKR   86 (88)
Q Consensus        75 ~~~rp~~~~~~~   86 (88)
                      |.+|||++++++
T Consensus       271 P~~R~s~~e~l~  282 (290)
T 3fpq_A          271 KDERYSIKDLLN  282 (290)
T ss_dssp             GGGSCCHHHHHT
T ss_pred             hhHCcCHHHHhc
Confidence            999999999865

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=99.79  E-value=2.6e-19  Score=95.81  Aligned_cols=85  Identities=31%  Similarity=0.499  Sum_probs=63.3

Q ss_pred             CCcccCcchhcc---CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHH-HHHHHcCCCCC----CCCCC----hHHHH
Q psy8478           1 MTRWMAPECLVD---GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDV-LHYVRGGGRLN----RPANC----SHLIR   68 (88)
Q Consensus         1 ~~~~~~pe~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~----~~~~~----~~~~~   68 (88)
                      ++.|||||.+..   ..|+.++|+||+|+++|++++ |..||.+.+.... ...+..+...+    .+..+    .+++.
T Consensus       197 T~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Ellt-g~~Pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~li~  275 (307)
T 3omv_A          197 SVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMT-GELPYSHINNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVA  275 (307)
T ss_dssp             CTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHH-SSCTTTTCCCHHHHHHHHHTTCCCCCSTTSCTTSCHHHHHHHH
T ss_pred             CCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHH-CCCCCCCCChHHHHHHHHhcCCCCCCcccccccchHHHHHHHH
Confidence            468999999864   358889999999999999999 9999987665444 44444443222    23334    45677


Q ss_pred             HHHhhCcccCCChhhhhh
Q psy8478          69 SRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        69 ~~l~~~~~~rp~~~~~~~   86 (88)
                      .|+..+|.+|||+.++.+
T Consensus       276 ~cl~~dP~~RPs~~ei~~  293 (307)
T 3omv_A          276 DCVKKVKEERPLFPQILS  293 (307)
T ss_dssp             HHTCSSSTTSCCHHHHHH
T ss_pred             HHcCCCHhHCcCHHHHHH
Confidence            788888999999998854

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=99.76  E-value=1.1e-18  Score=96.11  Aligned_cols=85  Identities=19%  Similarity=0.306  Sum_probs=67.0

Q ss_pred             CCcccCcchhccC-CCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcC--CCC--------------------
Q psy8478           1 MTRWMAPECLVDG-LFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGG--GRL--------------------   57 (88)
Q Consensus         1 ~~~~~~pe~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~--------------------   57 (88)
                      ++.|+|||.+.+. .|+.++|+||+|++++++++ |..||.+.+..+.+..|...  ...                    
T Consensus       225 T~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~-G~~pF~g~~~~~~l~~I~~~~g~p~~~~~~~~~~~~~~~~~~~~~  303 (398)
T 4b99_A          225 TRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLA-RRQLFPGKNYVHQLQLIMMVLGTPSPAVIQAVGAERVRAYIQSLP  303 (398)
T ss_dssp             CCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHH-TSCSSCCSSHHHHHHHHHHHHCCCCGGGTC-----CHHHHHHSSC
T ss_pred             ChHhcCHHHhcCCCCCCChhheehhHHHHHHHHH-CCCCCCCCCHHHHHHHHHHhcCCCChHHhhhhhhhhhhhhhhcCC
Confidence            4679999998875 56889999999999999999 99999998888877776421  100                    


Q ss_pred             ------------CCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          58 ------------NRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        58 ------------~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                                  ..+..+.+++.+||..+|.+|||++++++
T Consensus       304 ~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~  344 (398)
T 4b99_A          304 PRQPVPWETVYPGADRQALSLLGRMLRFEPSARISAAAALR  344 (398)
T ss_dssp             CCCCCCHHHHSTTCCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             CcCCCCHHHhCCCCCHHHHHHHHHHCcCChhHCcCHHHHhc
Confidence                        01223457889999999999999999865

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.76  E-value=1.1e-18  Score=99.61  Aligned_cols=85  Identities=19%  Similarity=0.295  Sum_probs=70.5

Q ss_pred             CCcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC-C------CCCCChHHHHHHHhh
Q psy8478           1 MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRL-N------RPANCSHLIRSRNRL   73 (88)
Q Consensus         1 ~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~------~~~~~~~~~~~~l~~   73 (88)
                      ++.|+|||.+.+..|+.++|+||+|+++|++++ |..||.+.+..+....+..+... +      .+..+.+++.+||..
T Consensus       319 T~~y~APEv~~~~~y~~~~DiWSlGvilyeml~-G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~dli~~~L~~  397 (573)
T 3uto_A          319 TAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLS-GLSPFGGENDDETLRNVKSCDWNMDDSAFSGISEDGKDFIRKLLLA  397 (573)
T ss_dssp             SGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHH-SCCSSCCSSHHHHHHHHHTTCCCCCSGGGTTSCHHHHHHHHTTSCS
T ss_pred             CccccCHHHhCCCCCCcHHHHHHHHHHHHHHHH-CCCCCCCcCHHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHHccC
Confidence            467999999999899999999999999999999 99999999988888888765321 1      223355677788888


Q ss_pred             CcccCCChhhhhh
Q psy8478          74 TENKAPSAVSKKR   86 (88)
Q Consensus        74 ~~~~rp~~~~~~~   86 (88)
                      +|.+||+++++++
T Consensus       398 dp~~R~t~~e~l~  410 (573)
T 3uto_A          398 DPNTRMTIHQALE  410 (573)
T ss_dssp             SGGGSCCHHHHHH
T ss_pred             ChhHCcCHHHHhc
Confidence            9999999999865

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=99.73  E-value=1.4e-17  Score=90.87  Aligned_cols=85  Identities=20%  Similarity=0.307  Sum_probs=61.7

Q ss_pred             CCcccCcchhccC-CCCchhhHHHHHHHHHHHHhcCCCCCCCC-CHHHHHHHHHc--C----------------------
Q psy8478           1 MTRWMAPECLVDG-LFSSQSDVWAFGVLLWEIMSLGQQPYPAR-TNVDVLHYVRG--G----------------------   54 (88)
Q Consensus         1 ~~~~~~pe~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~--~----------------------   54 (88)
                      ++.|+|||.+.+. .|+.++|+||+|++++++++ |..||... +..+.+..|..  |                      
T Consensus       209 T~~Y~APE~l~~~~~y~~~~DiWSlG~il~ell~-G~~Pf~~~~~~~~~l~~I~~~~G~~~~~~~~~~~~~~~~~~~~~p  287 (361)
T 4f9c_A          209 TPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLS-GRYPFYKASDDLTALAQIMTIRGSRETIQAAKTFGKSILCSKEVP  287 (361)
T ss_dssp             CGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHHH-TCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTEEEEESSCCC
T ss_pred             CccccCHHHHcCCCCCCCccchhhhHHHHHHHHH-CCCCCCCCCCHHHHHHHHHHhcCCccchhhhhhccccccccccCc
Confidence            3579999999875 58889999999999999999 99988543 34333333211  0                      


Q ss_pred             -------------C--------------------CCCCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          55 -------------G--------------------RLNRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        55 -------------~--------------------~~~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                                   .                    ....+..+.+++.+||..+|.+|+|++++++
T Consensus       288 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~is~~a~DLl~~lL~~dP~~R~ta~eaL~  352 (361)
T 4f9c_A          288 AQDLRKLCERLRGMDSSTPKLTSDIQGHATNLEGWNEVPDEAYDLLDKLLDLNPASRITAEEALL  352 (361)
T ss_dssp             CCCHHHHHHHHC----------------------CTTCCHHHHHHHHHHTCSCTTTSCCHHHHHT
T ss_pred             chhhhHHHHhhccccccccccccccccccccccccccCCHHHHHHHHHHCcCChhHCcCHHHHhc
Confidence                         0                    0012234567899999999999999999864

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=99.71  E-value=3.7e-17  Score=89.41  Aligned_cols=85  Identities=41%  Similarity=0.787  Sum_probs=71.1

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCCh----HHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPANCS----HLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~~~~~~l~~~~~~   77 (88)
                      +.|+|||.+....++.++|+|++|++++++++.|..||.+....+....+..+.+.+.|..++    +++..|+..+|.+
T Consensus       279 ~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~  358 (377)
T 3cbl_A          279 VKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLSNQQTREFVEKGGRLPCPELCPDAVFRLMEQCWAYEPGQ  358 (377)
T ss_dssp             GGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGG
T ss_pred             cCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCCchh
Confidence            359999999888888999999999999999976899999888888877777776666666555    5666788888999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||+++++.+
T Consensus       359 Rps~~~i~~  367 (377)
T 3cbl_A          359 RPSFSTIYQ  367 (377)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHHH
Confidence            999999865

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=99.71  E-value=7.2e-17  Score=90.09  Aligned_cols=85  Identities=34%  Similarity=0.695  Sum_probs=71.9

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCCh----HHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPANCS----HLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~~~~~~l~~~~~~   77 (88)
                      +.|+|||.+....++.++|+|++|++++++++.|..||.+....+....+..+.+.+.|..++    +++.+|+..+|.+
T Consensus       349 ~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~dp~~  428 (454)
T 1qcf_A          349 IKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVIRALERGYRMPRPENCPEELYNIMMRCWKNRPEE  428 (454)
T ss_dssp             GGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGG
T ss_pred             ccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHccCChhH
Confidence            469999999888899999999999999999987899999888888888887777666665554    5666788888999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||+++++.+
T Consensus       429 RPt~~~i~~  437 (454)
T 1qcf_A          429 RPTFEYIQS  437 (454)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHHH
Confidence            999999865

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=99.70  E-value=6.1e-17  Score=88.31  Aligned_cols=84  Identities=19%  Similarity=0.315  Sum_probs=70.4

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC-------CCCCCChHHHHHHHhhC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRL-------NRPANCSHLIRSRNRLT   74 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-------~~~~~~~~~~~~~l~~~   74 (88)
                      +.|++||.+....++.++|+|++|++++++++ |..||.+....+....+..+...       ..+..+.+++..||..+
T Consensus       182 ~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~d  260 (361)
T 2yab_A          182 PEFVAPEIVNYEPLGLEADMWSIGVITYILLS-GASPFLGDTKQETLANITAVSYDFDEEFFSQTSELAKDFIRKLLVKE  260 (361)
T ss_dssp             GGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHH-SCCSSCCSSHHHHHHHHHTTCCCCCHHHHTTSCHHHHHHHHHHSCSS
T ss_pred             ccEECchHHcCCCCCccccHHHHHHHHHHHHh-CCCCCCCCCHHHHHHHHHhcCCCCCchhccCCCHHHHHHHHHHCCCC
Confidence            56999999988889999999999999999999 99999988888888887655321       12344677889999999


Q ss_pred             cccCCChhhhhh
Q psy8478          75 ENKAPSAVSKKR   86 (88)
Q Consensus        75 ~~~rp~~~~~~~   86 (88)
                      |.+||++.++++
T Consensus       261 P~~R~t~~e~l~  272 (361)
T 2yab_A          261 TRKRLTIQEALR  272 (361)
T ss_dssp             TTTSCCHHHHHT
T ss_pred             hhHCcCHHHHhc
Confidence            999999999865

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=99.70  E-value=4.8e-17  Score=87.71  Aligned_cols=84  Identities=21%  Similarity=0.431  Sum_probs=69.3

Q ss_pred             CcccCcchhccCCCC-chhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCC-C--CCCCCChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFS-SQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGR-L--NRPANCSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~--~~~~~~~~~~~~~l~~~~~~   77 (88)
                      +.|++||.+.+..+. .++|+|++|++++++++ |..||.+.+..+....+..+.. .  ..+..+.+++.+|+..+|.+
T Consensus       177 ~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~-g~~pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~L~~dP~~  255 (328)
T 3fe3_A          177 PPYAAPELFQGKKYDGPEVDVWSLGVILYTLVS-GSLPFDGQNLKELRERVLRGKYRIPFYMSTDCENLLKRFLVLNPIK  255 (328)
T ss_dssp             GGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHH-SSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHCCSSTTT
T ss_pred             cceeCcccccCCCcCCchhhhhhhHHHHHHHHh-CCCCCCCCCHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHCCCChhH
Confidence            569999999877664 68999999999999999 9999998888888888765532 1  22345677888999999999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      |||++++.+
T Consensus       256 R~t~~eil~  264 (328)
T 3fe3_A          256 RGTLEQIMK  264 (328)
T ss_dssp             SCCHHHHTT
T ss_pred             CcCHHHHhc
Confidence            999999865

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=99.70  E-value=6.1e-17  Score=90.30  Aligned_cols=84  Identities=19%  Similarity=0.417  Sum_probs=70.2

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCC-CC------CCCCChHHHHHHHhhC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGR-LN------RPANCSHLIRSRNRLT   74 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~------~~~~~~~~~~~~l~~~   74 (88)
                      +.|++||.+....++.++|+|++|++++++++ |..||.+....+....+..+.. .+      .+..+.+++..|+..+
T Consensus       177 ~~Y~APE~l~~~~~~~~~DIwSlGvilyell~-G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~d  255 (444)
T 3soa_A          177 PGYLSPEVLRKDPYGKPVDLWACGVILYILLV-GYPPFWDEDQHRLYQQIKAGAYDFPSPEWDTVTPEAKDLINKMLTIN  255 (444)
T ss_dssp             GGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHH-SSCSCCCSSHHHHHHHHHHTCCCCCTTTTTTSCHHHHHHHHHHSCSS
T ss_pred             cccCCHHHhcCCCCCCccccHHHHHHHHHHHh-CCCCCCCccHHHHHHHHHhCCCCCCccccccCCHHHHHHHHHHcCCC
Confidence            57999999988889999999999999999999 9999998888888888765532 11      2334567888999999


Q ss_pred             cccCCChhhhhh
Q psy8478          75 ENKAPSAVSKKR   86 (88)
Q Consensus        75 ~~~rp~~~~~~~   86 (88)
                      |.+||++.++++
T Consensus       256 P~~Rpta~e~L~  267 (444)
T 3soa_A          256 PSKRITAAEALK  267 (444)
T ss_dssp             TTTSCCHHHHHH
T ss_pred             hhHCCCHHHHhc
Confidence            999999999865

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=99.70  E-value=1.6e-16  Score=86.67  Aligned_cols=85  Identities=39%  Similarity=0.873  Sum_probs=71.4

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCC----ChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN----CSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~l~~~~~~   77 (88)
                      +.|++||.+....++.++|+|++|++++++++.|..||......+....+..+.....+..    +.+++..|+..+|.+
T Consensus       250 ~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~~l~~dP~~  329 (367)
T 3l9p_A          250 VKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMDPPKNCPGPVYRIMTQCWQHQPED  329 (367)
T ss_dssp             GGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGG
T ss_pred             ccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCccCCHHHHHHHHHHcCCCHhH
Confidence            4699999998888999999999999999999668899998888888888877665554544    446777888899999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||++.++.+
T Consensus       330 Rps~~eil~  338 (367)
T 3l9p_A          330 RPNFAIILE  338 (367)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHHH
Confidence            999999875

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=99.69  E-value=9.4e-17  Score=89.57  Aligned_cols=85  Identities=36%  Similarity=0.774  Sum_probs=70.9

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCCh----HHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPANCS----HLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~~~~~~l~~~~~~   77 (88)
                      +.|++||.+....++.++|+|++|++++++++.|..||......+....+..+.+...|..++    +++..|+..+|.+
T Consensus       350 ~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~dp~~  429 (450)
T 1k9a_A          350 VKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKMDAPDGCPPAVYDVMKNCWHLDAAT  429 (450)
T ss_dssp             TTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSCTTTHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGG
T ss_pred             cceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCcCCHHHHHHHHHHcCCChhH
Confidence            579999999888899999999999999999976899998877777777887777666666555    4566778888999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||++.++.+
T Consensus       430 Rpt~~~l~~  438 (450)
T 1k9a_A          430 RPTFLQLRE  438 (450)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHHH
Confidence            999999865

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=99.69  E-value=8.2e-17  Score=87.76  Aligned_cols=84  Identities=21%  Similarity=0.402  Sum_probs=69.6

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCC-CC------CCCCChHHHHHHHhhC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGR-LN------RPANCSHLIRSRNRLT   74 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~------~~~~~~~~~~~~l~~~   74 (88)
                      +.|++||.+....++.++|+|++|++++++++ |..||.+.+..+....+..+.. .+      .+..+.+++.+||..+
T Consensus       194 ~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~d  272 (362)
T 2bdw_A          194 PGYLSPEVLKKDPYSKPVDIWACGVILYILLV-GYPPFWDEDQHRLYAQIKAGAYDYPSPEWDTVTPEAKSLIDSMLTVN  272 (362)
T ss_dssp             TTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHH-SSCSSCCSSHHHHHHHHHHTCCCCCTTGGGGSCHHHHHHHHHHSCSS
T ss_pred             ccccCHHHHccCCCCchhhHHHHHHHHHHHHH-CCCCCCCCCHHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHHcCCC
Confidence            57999999988889999999999999999999 9999998888888777765532 22      2334567888999999


Q ss_pred             cccCCChhhhhh
Q psy8478          75 ENKAPSAVSKKR   86 (88)
Q Consensus        75 ~~~rp~~~~~~~   86 (88)
                      |.+||++.++++
T Consensus       273 P~~R~t~~e~l~  284 (362)
T 2bdw_A          273 PKKRITADQALK  284 (362)
T ss_dssp             GGGSCCHHHHTT
T ss_pred             hhhCcCHHHHhc
Confidence            999999999865

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=99.69  E-value=1.5e-16  Score=88.74  Aligned_cols=85  Identities=35%  Similarity=0.652  Sum_probs=71.8

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCCh----HHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPANCS----HLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~~~~~~l~~~~~~   77 (88)
                      +.|++||.+....++.++|+|++|++++++++.|..||.+....+....+..+.+.+.+..++    +++..|+..+|.+
T Consensus       345 ~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~dP~~  424 (452)
T 1fmk_A          345 IKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEE  424 (452)
T ss_dssp             GGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTSCHHHHHHHHHHTCSSGGG
T ss_pred             ccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHccCChhh
Confidence            469999999888899999999999999999987889999888888888888777666665554    5667788888999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||+++++.+
T Consensus       425 Rpt~~~l~~  433 (452)
T 1fmk_A          425 RPTFEYLQA  433 (452)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHHH
Confidence            999998865

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=99.69  E-value=6.6e-17  Score=88.30  Aligned_cols=85  Identities=38%  Similarity=0.835  Sum_probs=70.3

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCC----hHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPANC----SHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~----~~~~~~~l~~~~~~   77 (88)
                      +.|++||.+.+..++.++|+|++|++++++++.|..||.+....+....+..+.+...+..+    .+++..|+..+|.+
T Consensus       269 ~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~  348 (370)
T 2psq_A          269 VKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLLKEGHRMDKPANCTNELYMMMRDCWHAVPSQ  348 (370)
T ss_dssp             GGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHHHTTCCCCCCTTSCHHHHHHHHHHTCSSGGG
T ss_pred             cceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcCCChhh
Confidence            46999999988889999999999999999987688999888877777777776655555544    45677788888999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||++.++.+
T Consensus       349 Rpt~~ell~  357 (370)
T 2psq_A          349 RPTFKQLVE  357 (370)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHHH
Confidence            999999865

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=99.69  E-value=1.7e-16  Score=85.42  Aligned_cols=86  Identities=37%  Similarity=0.686  Sum_probs=71.5

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCC----hHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPANC----SHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~----~~~~~~~l~~~~~~   77 (88)
                      +.|++||.+....++.++|+|++|++++++++.|..||......+....+..+...+.+..+    .+++..|+..+|.+
T Consensus       218 ~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~  297 (325)
T 3kul_A          218 IRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNMTNRDVISSVEEGYRLPAPMGCPHALHQLMLDCWHKDRAQ  297 (325)
T ss_dssp             GGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTSCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGG
T ss_pred             ccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcccCCHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHccCChhh
Confidence            35999999988888999999999999999887688999888888888888777655555544    45777788889999


Q ss_pred             CCChhhhhhc
Q psy8478          78 APSAVSKKRI   87 (88)
Q Consensus        78 rp~~~~~~~~   87 (88)
                      ||++.++.+.
T Consensus       298 Rps~~eil~~  307 (325)
T 3kul_A          298 RPRFSQIVSV  307 (325)
T ss_dssp             SCCHHHHHHH
T ss_pred             CcCHHHHHHH
Confidence            9999998763

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=99.68  E-value=2.1e-16  Score=85.51  Aligned_cols=84  Identities=18%  Similarity=0.367  Sum_probs=68.1

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCC-C--CCCCCChHHHHHHHhhCcccC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGR-L--NRPANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~--~~~~~~~~~~~~~l~~~~~~r   78 (88)
                      +.|+|||.+.+..++.++|+|++|++++++++ |..||.+.+..+....+..... .  ..+..+.+++.+||..+|.+|
T Consensus       169 ~~y~aPE~~~~~~~~~~~DiwslG~il~ell~-g~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~lL~~dP~~R  247 (337)
T 1o6l_A          169 PEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMC-GRLPFYNQDHERLFELILMEEIRFPRTLSPEAKSLLAGLLKKDPKQR  247 (337)
T ss_dssp             GGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHH-SSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSSTTTS
T ss_pred             hhhCChhhhcCCCCCchhhcccchhHHHHHhc-CCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHhhcCHHHh
Confidence            57999999988889999999999999999999 9999998888777777765421 1  223445678888999999999


Q ss_pred             C-----Chhhhhh
Q psy8478          79 P-----SAVSKKR   86 (88)
Q Consensus        79 p-----~~~~~~~   86 (88)
                      |     +++++.+
T Consensus       248 ~g~~~~~~~ei~~  260 (337)
T 1o6l_A          248 LGGGPSDAKEVME  260 (337)
T ss_dssp             TTCSTTTHHHHHT
T ss_pred             cCCCCCCHHHHHc
Confidence            9     7887754

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=99.68  E-value=2.2e-16  Score=83.33  Aligned_cols=85  Identities=35%  Similarity=0.629  Sum_probs=69.1

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCC----ChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN----CSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~l~~~~~~   77 (88)
                      +.|++||.+....++.++|+|++|++++++++.|..||.+....+....+..+...+.+..    +.+++..|+..+|.+
T Consensus       181 ~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~~l~~~p~~  260 (281)
T 1mp8_A          181 IKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSR  260 (281)
T ss_dssp             GGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGG
T ss_pred             ccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHccCChhh
Confidence            3699999998888899999999999999998658899988777777777776655544444    446777888899999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||++.++.+
T Consensus       261 Rps~~~l~~  269 (281)
T 1mp8_A          261 RPRFTELKA  269 (281)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHHH
Confidence            999999865

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=99.68  E-value=4.3e-16  Score=81.98  Aligned_cols=84  Identities=23%  Similarity=0.403  Sum_probs=69.1

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCC----CChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA----NCSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~l~~~~~~   77 (88)
                      +.|++||.+....++.++|+|++|++++++++ |..||......+....+..+.....+.    .+.+++.+|+..+|.+
T Consensus       180 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~-g~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~~l~~~p~~  258 (279)
T 2w5a_A          180 PYYMSPEQMNRMSYNEKSDIWSLGCLLYELCA-LMPPFTAFSQKELAGKIREGKFRRIPYRYSDELNEIITRMLNLKDYH  258 (279)
T ss_dssp             CTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHH-SSCSSCCSSHHHHHHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGG
T ss_pred             ccccChHHhccCCCCchhhHHHHHHHHHHHHH-CCCCCcccCHHHHHHHHhhcccccCCcccCHHHHHHHHHHcCCCccc
Confidence            46999999988888899999999999999999 999998888777777777665444443    4556778899999999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||++.++++
T Consensus       259 Rps~~~ll~  267 (279)
T 2w5a_A          259 RPSVEEILE  267 (279)
T ss_dssp             SCCHHHHHT
T ss_pred             CCCHHHHHh
Confidence            999999875

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=99.68  E-value=1.1e-16  Score=85.20  Aligned_cols=84  Identities=24%  Similarity=0.504  Sum_probs=66.9

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCC--CCCC----CCChHHHHHHHhhCc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGR--LNRP----ANCSHLIRSRNRLTE   75 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~----~~~~~~~~~~l~~~~   75 (88)
                      +.|++||.+.+..++.++|+|++|++++++++ |..||...........+.....  ...+    ..+.+++..|+..+|
T Consensus       180 ~~y~aPE~~~~~~~~~~~DiwslG~il~ell~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp  258 (297)
T 3fxz_A          180 PYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIE-GEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLEMDV  258 (297)
T ss_dssp             GGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHH-SSCTTTTSCHHHHHHHHHHHCSCCCSCGGGSCHHHHHHHHHHSCSST
T ss_pred             cCccChhhhcCCCCCcHHHHHHHHHHHHHHHh-CCCCCCCCCHHHHHHHHHhCCCCCCCCccccCHHHHHHHHHHccCCh
Confidence            56999999988889999999999999999999 9999988877666655543222  2222    335577888999999


Q ss_pred             ccCCChhhhhh
Q psy8478          76 NKAPSAVSKKR   86 (88)
Q Consensus        76 ~~rp~~~~~~~   86 (88)
                      .+||++.++++
T Consensus       259 ~~Rps~~ell~  269 (297)
T 3fxz_A          259 EKRGSAKELLQ  269 (297)
T ss_dssp             TTSCCHHHHTT
T ss_pred             hHCcCHHHHhh
Confidence            99999999865

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=99.68  E-value=1.9e-16  Score=85.21  Aligned_cols=84  Identities=21%  Similarity=0.332  Sum_probs=68.6

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC-------CCCCCChHHHHHHHhhC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRL-------NRPANCSHLIRSRNRLT   74 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-------~~~~~~~~~~~~~l~~~   74 (88)
                      +.|++||.+....++.++|+|++|++++++++ |..||.+....+....+......       ..+..+.+++..|+..+
T Consensus       181 ~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~d  259 (326)
T 2y0a_A          181 PEFVAPEIVNYEPLGLEADMWSIGVITYILLS-GASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKD  259 (326)
T ss_dssp             TTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHH-SCCSSCCSSHHHHHHHHHHTCCCCCHHHHTTSCHHHHHHHHHHSCSS
T ss_pred             cCcCCceeecCCCCCcHHHHHHHHHHHHHHHH-CcCCCCCCCHHHHHHHHHhcCCCcCccccccCCHHHHHHHHHHccCC
Confidence            57999999988888999999999999999999 99999888877777766543211       22344567888999999


Q ss_pred             cccCCChhhhhh
Q psy8478          75 ENKAPSAVSKKR   86 (88)
Q Consensus        75 ~~~rp~~~~~~~   86 (88)
                      |.+||++.++++
T Consensus       260 P~~Rpt~~e~l~  271 (326)
T 2y0a_A          260 PKKRMTIQDSLQ  271 (326)
T ss_dssp             GGGSCCHHHHHH
T ss_pred             hhhCCCHHHHhc
Confidence            999999999865

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=99.68  E-value=6.2e-17  Score=87.01  Aligned_cols=84  Identities=18%  Similarity=0.357  Sum_probs=69.3

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC-------CCCCCChHHHHHHHhhC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRL-------NRPANCSHLIRSRNRLT   74 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-------~~~~~~~~~~~~~l~~~   74 (88)
                      +.|++||.+....++.++|+|++|++++++++ |..||.+....+....+..+...       ..+..+.+++..|+..+
T Consensus       167 ~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~-g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~d  245 (321)
T 1tki_A          167 PEYYAPEVHQHDVVSTATDMWSLGTLVYVLLS-GINPFLAETNQQIIENIMNAEYTFDEEAFKEISIEAMDFVDRLLVKE  245 (321)
T ss_dssp             GGGSCHHHHTTCEECHHHHHHHHHHHHHHHHH-SSCTTCCSSHHHHHHHHHHTCCCCCHHHHTTSCHHHHHHHHTTSCSS
T ss_pred             hhhcCcHHhcCCCCCchhhHHHHHHHHHHHHh-CCCCCcCCCHHHHHHHHHcCCCCCChhhhccCCHHHHHHHHHHcCCC
Confidence            56999999988778899999999999999999 99999988888887777655322       22445667888888899


Q ss_pred             cccCCChhhhhh
Q psy8478          75 ENKAPSAVSKKR   86 (88)
Q Consensus        75 ~~~rp~~~~~~~   86 (88)
                      |.+|||+.++++
T Consensus       246 p~~Rpt~~e~l~  257 (321)
T 1tki_A          246 RKSRMTASEALQ  257 (321)
T ss_dssp             GGGSCCHHHHHH
T ss_pred             hhHCcCHHHHhc
Confidence            999999999865

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=99.68  E-value=3.8e-16  Score=89.89  Aligned_cols=85  Identities=33%  Similarity=0.726  Sum_probs=70.8

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCChH----HHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPANCSH----LIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~----~~~~~l~~~~~~   77 (88)
                      +.|+|||.+....++.++|+|++|++++++++.|..||.+....+....+..+.+...|..++.    ++..|+..+|.+
T Consensus       503 ~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~dP~~  582 (613)
T 2ozo_A          503 LKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQGKRMECPPECPPELYALMSDCWIYKWED  582 (613)
T ss_dssp             CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCSHHHHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSTTT
T ss_pred             cceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHcCCCCCCCCcCCHHHHHHHHHHcCCChhH
Confidence            4699999998888999999999999999999669999998888888888888877766666655    455566667899


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||++.++.+
T Consensus       583 RPs~~~l~~  591 (613)
T 2ozo_A          583 RPDFLTVEQ  591 (613)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHHH
Confidence            999999865

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=99.67  E-value=1.4e-16  Score=86.41  Aligned_cols=83  Identities=23%  Similarity=0.442  Sum_probs=68.3

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC---CCCCCChHHHHHHHhhCcccC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRL---NRPANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~l~~~~~~r   78 (88)
                      +.|+|||.+.+..++.++|+|++|++++++++ |..||.+.+..+....+..+...   ..+..+.+++.+|+..+|.+|
T Consensus       182 ~~y~aPE~~~~~~~~~~~DiwslG~il~ell~-g~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~lL~~dp~~R  260 (345)
T 1xjd_A          182 PDYIAPEILLGQKYNHSVDWWSFGVLLYEMLI-GQSPFHGQDEEELFHSIRMDNPFYPRWLEKEAKDLLVKLFVREPEKR  260 (345)
T ss_dssp             GGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHH-SSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHSCSSGGGS
T ss_pred             cccCChhhhcCCCCCChhhhHHHHHHHHHHhc-CCCCCCCCCHHHHHHHHHhCCCCCCcccCHHHHHHHHHHhcCCHhHc
Confidence            57999999988889999999999999999999 99999988888888887655321   123445678888999999999


Q ss_pred             CChh-hhh
Q psy8478          79 PSAV-SKK   85 (88)
Q Consensus        79 p~~~-~~~   85 (88)
                      |++. ++.
T Consensus       261 ~~~~~~i~  268 (345)
T 1xjd_A          261 LGVRGDIR  268 (345)
T ss_dssp             BTTBSCGG
T ss_pred             CCChHHHH
Confidence            9987 654

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=99.67  E-value=8.8e-17  Score=87.45  Aligned_cols=79  Identities=23%  Similarity=0.445  Sum_probs=66.8

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC---CCCCCChHHHHHHHhhCcccC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRL---NRPANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~l~~~~~~r   78 (88)
                      +.|+|||.+....++.++|+|++|++++++++ |..||.+.+..+....+..+...   ..+..+.+++.+||..+|.+|
T Consensus       188 ~~y~aPE~~~~~~~~~~~DiwslG~il~ell~-G~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~~lL~~dP~~R  266 (353)
T 3txo_A          188 PDYIAPEILQEMLYGPAVDWWAMGVLLYEMLC-GHAPFEAENEDDLFEAILNDEVVYPTWLHEDATGILKSFMTKNPTMR  266 (353)
T ss_dssp             GGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHH-SSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSSGGGS
T ss_pred             cCeEChhhcCCCCcCCccCCCcchHHHHHHHh-CCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHhhhCHHHc
Confidence            57999999988889999999999999999999 99999998888888888765321   123456778889999999999


Q ss_pred             CCh
Q psy8478          79 PSA   81 (88)
Q Consensus        79 p~~   81 (88)
                      |++
T Consensus       267 ~~~  269 (353)
T 3txo_A          267 LGS  269 (353)
T ss_dssp             TTS
T ss_pred             cCC
Confidence            998

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=99.67  E-value=2.2e-16  Score=84.83  Aligned_cols=84  Identities=19%  Similarity=0.442  Sum_probs=68.9

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCC------CCCCChHHHHHHHhhCc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLN------RPANCSHLIRSRNRLTE   75 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~l~~~~   75 (88)
                      +.|++||.+....++.++|+|++|++++++++ |..||......+....+.....+.      .+..+.+++..|+..+|
T Consensus       205 ~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp  283 (321)
T 2c30_A          205 PYWMAPEVISRSLYATEVDIWSLGIMVIEMVD-GEPPYFSDSPVQAMKRLRDSPPPKLKNSHKVSPVLRDFLERMLVRDP  283 (321)
T ss_dssp             GGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHH-SSCTTTTSCHHHHHHHHHHSSCCCCTTGGGSCHHHHHHHHHHSCSST
T ss_pred             ccccCHhhhcCCCCCchhhHHHHHHHHHHHHh-CCCCCCCCCHHHHHHHHhcCCCCCcCccccCCHHHHHHHHHHccCCh
Confidence            56999999988888999999999999999999 999998888777777776543322      23345678888999999


Q ss_pred             ccCCChhhhhh
Q psy8478          76 NKAPSAVSKKR   86 (88)
Q Consensus        76 ~~rp~~~~~~~   86 (88)
                      .+||++.++.+
T Consensus       284 ~~Rps~~ell~  294 (321)
T 2c30_A          284 QERATAQELLD  294 (321)
T ss_dssp             TTSCCHHHHHT
T ss_pred             hhCcCHHHHhc
Confidence            99999999865

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=99.67  E-value=1.9e-16  Score=89.23  Aligned_cols=85  Identities=39%  Similarity=0.731  Sum_probs=70.8

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCCh----HHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPANCS----HLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~~~~~~l~~~~~~   77 (88)
                      +.|++||.+....++.++|+|++|++++++++.|..||.+....+....+..+.+...+..++    +++..|+..+|.+
T Consensus       383 ~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~  462 (495)
T 1opk_A          383 IKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSD  462 (495)
T ss_dssp             GGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGG
T ss_pred             cceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCcChhH
Confidence            469999999888889999999999999999987889998888777777777776665555554    5677788888999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||++.++.+
T Consensus       463 RPs~~el~~  471 (495)
T 1opk_A          463 RPSFAEIHQ  471 (495)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHHH
Confidence            999999865

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=99.67  E-value=3.1e-16  Score=83.92  Aligned_cols=84  Identities=35%  Similarity=0.504  Sum_probs=68.1

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHH-cCCCCCCCCC----ChHHHHHHHhhCcc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVR-GGGRLNRPAN----CSHLIRSRNRLTEN   76 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~----~~~~~~~~l~~~~~   76 (88)
                      +.|++||.+.+..++.++|+|++|++++++++ |..||......+....+. .......+..    +.+++..|+..+|.
T Consensus       203 ~~y~aPE~~~~~~~~~~~DiwslG~il~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~  281 (309)
T 3p86_A          203 PEWMAPEVLRDEPSNEKSDVYSFGVILWELAT-LQQPWGNLNPAQVVAAVGFKCKRLEIPRNLNPQVAAIIEGCWTNEPW  281 (309)
T ss_dssp             CTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHH-CCCTTTTSCHHHHHHHHHHSCCCCCCCTTSCHHHHHHHHHHTCSSGG
T ss_pred             ccccChhhhcCCCCCchhhHHHHHHHHHHHHh-CCCCCCCCCHHHHHHHHHhcCCCCCCCccCCHHHHHHHHHHccCChh
Confidence            57999999988888899999999999999999 999999888777766663 3333344443    45677788889999


Q ss_pred             cCCChhhhhh
Q psy8478          77 KAPSAVSKKR   86 (88)
Q Consensus        77 ~rp~~~~~~~   86 (88)
                      +||++.++.+
T Consensus       282 ~Rps~~~ll~  291 (309)
T 3p86_A          282 KRPSFATIMD  291 (309)
T ss_dssp             GSCCHHHHHH
T ss_pred             hCcCHHHHHH
Confidence            9999999875

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=99.67  E-value=1.1e-16  Score=86.83  Aligned_cols=84  Identities=19%  Similarity=0.342  Sum_probs=65.6

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC------------------------
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRL------------------------   57 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------------------------   57 (88)
                      +.|++||.+.+..++.++|+|++|++++++++ |..||......+....+......                        
T Consensus       223 ~~y~aPE~~~~~~~~~~~DiwslG~il~ell~-g~~pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  301 (360)
T 3llt_A          223 RQYRAPEVILNLGWDVSSDMWSFGCVLAELYT-GSLLFRTHEHMEHLAMMESIIQPIPKNMLYEATKTNGSKYVNKDELK  301 (360)
T ss_dssp             GGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHH-SSCSCCCSSHHHHHHHHHHHTCCCCHHHHHHHTTSGGGGGEETTTTE
T ss_pred             ccccCcHHHcCCCCCCccchHHHHHHHHHHHH-CCCCCCCCcHHHHHHHHHHhcCCCCHHHHhhhhhccCccccCcccce
Confidence            57999999998889999999999999999999 99999887776665554322110                        


Q ss_pred             -CCC------------------------CCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          58 -NRP------------------------ANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        58 -~~~------------------------~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                       ..|                        ..+.+++.+||..+|.+|||+.++++
T Consensus       302 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpta~elL~  355 (360)
T 3llt_A          302 LAWPENASSINSIKHVKKCLPLYKIIKHELFCDFLYSILQIDPTLRPSPAELLK  355 (360)
T ss_dssp             ECTTTTCSCHHHHHHHHTCCCHHHHCCCHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred             ecCcccccchhhhhhhhhcccccccchHHHHHHHHHHHhcCChhhCCCHHHHhc
Confidence             001                        11237899999999999999999875

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=99.67  E-value=5.6e-16  Score=84.87  Aligned_cols=85  Identities=38%  Similarity=0.840  Sum_probs=70.5

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCC----hHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPANC----SHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~----~~~~~~~l~~~~~~   77 (88)
                      +.|++||.+.+..++.++|+|++|++++++++.|..||.+....+....+..+.....+..+    .+++..|+..+|.+
T Consensus       257 ~~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~  336 (382)
T 3tt0_A          257 VKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQ  336 (382)
T ss_dssp             GGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHTTCCCCCCSSCCHHHHHHHHHHTCSSGGG
T ss_pred             cceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCccCCHHHHHHHHHHcCCChhh
Confidence            35999999988888999999999999999987688999888888888888776655555544    45677788888999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||++.++.+
T Consensus       337 Rps~~ell~  345 (382)
T 3tt0_A          337 RPTFKQLVE  345 (382)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHHH
Confidence            999999875

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=99.67  E-value=4.6e-16  Score=89.87  Aligned_cols=85  Identities=36%  Similarity=0.712  Sum_probs=72.1

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCCh----HHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPANCS----HLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~~~~~~l~~~~~~   77 (88)
                      +.|+|||.+....++.++|+|++|++++++++.|..||.+....+....+..+.+...+..++    +++..|+..+|.+
T Consensus       536 ~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~dP~~  615 (635)
T 4fl3_A          536 VKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMGCPAGCPREMYDLMNLCWTYDVEN  615 (635)
T ss_dssp             GGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSTTT
T ss_pred             eeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCCHhH
Confidence            469999999888899999999999999999976999999988888888888777666665554    5666788888999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||++.++.+
T Consensus       616 RPs~~~l~~  624 (635)
T 4fl3_A          616 RPGFAAVEL  624 (635)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHHH
Confidence            999999865

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=99.67  E-value=6.1e-16  Score=83.38  Aligned_cols=86  Identities=42%  Similarity=0.729  Sum_probs=70.6

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCC----ChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN----CSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~l~~~~~~   77 (88)
                      +.|++||.+....++.++|+|++|++++++++.|..||.+....+....+..+.....+..    +.+++..|+..+|.+
T Consensus       240 ~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~  319 (343)
T 1luf_A          240 IRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMAHEEVIYYVRDGNILACPENCPLELYNLMRLCWSKLPAD  319 (343)
T ss_dssp             GGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGG
T ss_pred             ceecChhhhccCCcCcccccHHHHHHHHHHHhcCCCcCCCCChHHHHHHHhCCCcCCCCCCCCHHHHHHHHHHcccCccc
Confidence            4699999998888999999999999999999768889988888888888877655444444    456777888889999


Q ss_pred             CCChhhhhhc
Q psy8478          78 APSAVSKKRI   87 (88)
Q Consensus        78 rp~~~~~~~~   87 (88)
                      ||++.++.+.
T Consensus       320 Rps~~~~~~~  329 (343)
T 1luf_A          320 RPSFCSIHRI  329 (343)
T ss_dssp             SCCHHHHHHH
T ss_pred             CCCHHHHHHH
Confidence            9999998653

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=99.67  E-value=8.4e-17  Score=88.09  Aligned_cols=50  Identities=22%  Similarity=0.506  Sum_probs=43.6

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHH
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVR   52 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   52 (88)
                      +.|++||.+.+..++.++|+|++|++++++++ |..||.+.+..+....+.
T Consensus       222 ~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt-g~~pf~~~~~~~~~~~i~  271 (382)
T 2vx3_A          222 RFYRSPEVLLGMPYDLAIDMWSLGCILVEMHT-GEPLFSGANEVDQMNKIV  271 (382)
T ss_dssp             GGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHH-SSCSSCCSSHHHHHHHHH
T ss_pred             ccccChHHHcCCCCCcHHHHHHHHHHHHHHHh-CCCCCCCCCHHHHHHHHH
Confidence            56999999988889999999999999999999 999999887766665553

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.67  E-value=7.3e-16  Score=80.84  Aligned_cols=85  Identities=34%  Similarity=0.646  Sum_probs=70.5

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCC----ChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN----CSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~l~~~~~~   77 (88)
                      +.|++||.+....++.++|+|++|++++++++.|..||......+....+..+.....+..    +.+++..|+..+|.+
T Consensus       171 ~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~  250 (269)
T 4hcu_A          171 VKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGFRLYKPRLASTHVYQIMNHCWRERPED  250 (269)
T ss_dssp             GGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTTCCCCCCTTSCHHHHHHHHHHTCSSGGG
T ss_pred             cccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHhcCccCCCCCcCCHHHHHHHHHHccCCccc
Confidence            3599999998888999999999999999998768899998888888888876655444443    456777889999999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||++.++.+
T Consensus       251 Rps~~~ll~  259 (269)
T 4hcu_A          251 RPAFSRLLR  259 (269)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHHH
Confidence            999999875

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=99.66  E-value=1.9e-16  Score=84.43  Aligned_cols=84  Identities=17%  Similarity=0.255  Sum_probs=66.3

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC--CC----------------------
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG--RL----------------------   57 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~----------------------   57 (88)
                      +.|++||.+....++.++|+|++|++++++++ |..||.+....+....+....  ..                      
T Consensus       183 ~~y~aPE~~~~~~~~~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (308)
T 3g33_A          183 LWYRAPEVLLQSTYATPVDMWSVGCIFAEMFR-RKPLFCGNSEADQLGKIFDLIGLPPEDDWPRDVSLPRGAFPPRGPRP  261 (308)
T ss_dssp             CSSCCHHHHHTSCCCSTHHHHHHHHHHHHTTT-SSCSCCCSSHHHHHHHHHHHHCCCCTTTSCSSCSSCGGGSCCCCCCC
T ss_pred             ccccCchHHcCCCCCchHHHHHHHHHHHHHHh-CCCCCCCCCHHHHHHHHHHHhCCCChhhccchhhccccccCCCCCCc
Confidence            57999999988889999999999999999999 999998888777666653211  00                      


Q ss_pred             ------CCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          58 ------NRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        58 ------~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                            ..+..+.+++.+||..+|.+|||+.++++
T Consensus       262 ~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  296 (308)
T 3g33_A          262 VQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQ  296 (308)
T ss_dssp             HHHHSCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             HHHhCccccHHHHHHHHHHhcCCCccCCCHHHHhc
Confidence                  11223346889999999999999999865

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=99.66  E-value=1.2e-16  Score=88.73  Aligned_cols=49  Identities=24%  Similarity=0.530  Sum_probs=42.8

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHH
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYV   51 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   51 (88)
                      +.|+|||.+.+..++.++|+|++|++++++++ |..||.+.+..+.+..+
T Consensus       263 ~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt-G~~pf~~~~~~~~l~~i  311 (429)
T 3kvw_A          263 RFYRAPEVILGARYGMPIDMWSLGCILAELLT-GYPLLPGEDEGDQLACM  311 (429)
T ss_dssp             GGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHH-SSCSSCCSSHHHHHHHH
T ss_pred             CCccChHHHhCCCCCchHHHHhHHHHHHHHHh-CCCCCCCCCHHHHHHHH
Confidence            56999999998889999999999999999999 99999888776665544

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=99.66  E-value=1.3e-16  Score=87.47  Aligned_cols=84  Identities=23%  Similarity=0.399  Sum_probs=65.8

Q ss_pred             CcccCcchhcc-CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC-----------------------
Q psy8478           2 TRWMAPECLVD-GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRL-----------------------   57 (88)
Q Consensus         2 ~~~~~pe~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----------------------   57 (88)
                      +.|+|||.+.+ ..++.++|+|++|++++++++ |..||.+.+..+....+......                       
T Consensus       194 ~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~-g~~pf~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  272 (388)
T 3oz6_A          194 RWYRAPEILLGSTKYTKGIDMWSLGCILGEILC-GKPIFPGSSTMNQLERIIGVIDFPSNEDVESIQSPFAKTMIESLKE  272 (388)
T ss_dssp             GGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHH-SSCSCCCSSHHHHHHHHHHHHCCCCHHHHHTSCCSSHHHHHHHHHH
T ss_pred             CCcCCHHHhcCCCCCCChhhHHHHHHHHHHHHh-CCCCCCCCCHHHHHHHHHHhcCCCCHHHHHhccCHHHHHHHHhCcc
Confidence            35899999876 578899999999999999999 99999988877666655321000                       


Q ss_pred             ---------------------------CCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          58 ---------------------------NRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        58 ---------------------------~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                                                 ..+..+.+++.+||..+|.+|||++++++
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~t~~e~l~  328 (388)
T 3oz6_A          273 KVEIRQSNKRDIFTKWKNLLLKINPKADCNEEALDLLDKLLQFNPNKRISANDALK  328 (388)
T ss_dssp             HCC-----CCCCHHHHHHHHHHHCTTCCCCHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred             cccccCCCHHHhCcchhhhcccccccccCCHHHHHHHHHhhccCcccCCCHHHHhC
Confidence                                       12334567889999999999999999865

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.66  E-value=5.2e-16  Score=88.18  Aligned_cols=85  Identities=35%  Similarity=0.652  Sum_probs=71.7

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCCh----HHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPANCS----HLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~~~~~~l~~~~~~   77 (88)
                      +.|++||.+....++.++|+|++|++++++++.|..||.+....+....+..+.+.+.+..++    +++.+|+..+|.+
T Consensus       428 ~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~dP~~  507 (535)
T 2h8h_A          428 IKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEE  507 (535)
T ss_dssp             GGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGG
T ss_pred             ccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCChhH
Confidence            469999999888899999999999999999886889999888888888888777666555554    5667788888999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||+++++.+
T Consensus       508 RPt~~~l~~  516 (535)
T 2h8h_A          508 RPTFEYLQA  516 (535)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHHH
Confidence            999999865

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=99.66  E-value=1e-16  Score=89.82  Aligned_cols=84  Identities=17%  Similarity=0.256  Sum_probs=66.5

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCC-----------------------
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLN-----------------------   58 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----------------------   58 (88)
                      +.|++||.+.+..|+.++|+|++|++++++++ |..||.+.+..+.+..+......+                       
T Consensus       227 ~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~-g~~pF~g~~~~~~~~~i~~~lg~p~~~~~~~~~~~~~~~~~~~~~~~  305 (464)
T 3ttj_A          227 RYYRAPEVILGMGYKENVDIWSVGCIMGEMVR-HKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYA  305 (464)
T ss_dssp             CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHH-SSCSSCCSSHHHHHHHHHHHHCSCCHHHHTTSCHHHHHHHTTSCCCC
T ss_pred             ccccCHHHHcCCCCCHHHHHHHHHHHHHHHHh-CCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHcchhhhhHhhcccccC
Confidence            56999999998889999999999999999999 999999888776666553211000                       


Q ss_pred             -------C---------------CCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          59 -------R---------------PANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        59 -------~---------------~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                             .               +..+.+++.+||..+|.+|||++++++
T Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~  355 (464)
T 3ttj_A          306 GLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQ  355 (464)
T ss_dssp             CCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             CCChHHhCcccccccccccccccCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence                   0               112457889999999999999999865

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=99.66  E-value=4.3e-16  Score=83.75  Aligned_cols=85  Identities=15%  Similarity=0.318  Sum_probs=68.6

Q ss_pred             CCcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCC---CCCCCCChHHHHHHHhhCccc
Q psy8478           1 MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGR---LNRPANCSHLIRSRNRLTENK   77 (88)
Q Consensus         1 ~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~l~~~~~~   77 (88)
                      ++.|++||.+....++.++|+|++|++++++++ |..||.+.+..+....+..+..   ...+..+.+++.+|+..+|.+
T Consensus       166 t~~y~aPE~~~~~~~~~~~DiwslG~il~ell~-g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~~lL~~dp~~  244 (318)
T 1fot_A          166 TPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLA-GYTPFYDSNTMKTYEKILNAELRFPPFFNEDVKDLLSRLITRDLSQ  244 (318)
T ss_dssp             CTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHH-SSCTTCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSCTTT
T ss_pred             CccccCHhHhcCCCCCcccchhhhHHHHHHHHh-CCCCCCCCCHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhccCHHH
Confidence            357999999988889999999999999999999 9999998888777777765431   122345667888899999999


Q ss_pred             CC-----Chhhhhh
Q psy8478          78 AP-----SAVSKKR   86 (88)
Q Consensus        78 rp-----~~~~~~~   86 (88)
                      ||     +++++.+
T Consensus       245 R~~~~~~~~~~i~~  258 (318)
T 1fot_A          245 RLGNLQNGTEDVKN  258 (318)
T ss_dssp             CTTSSTTTTHHHHT
T ss_pred             cCCCcCCCHHHHhc
Confidence            99     7777653

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=99.66  E-value=4.7e-16  Score=83.65  Aligned_cols=85  Identities=26%  Similarity=0.581  Sum_probs=69.4

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCC----ChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN----CSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~l~~~~~~   77 (88)
                      +.|++||.+.+..++.++|+|++|++++++++.|..||.+....+....+..+...+.+..    +.+++..|+..+|.+
T Consensus       183 ~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~  262 (327)
T 3poz_A          183 IKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPICTIDVYMIMVKCWMIDADS  262 (327)
T ss_dssp             GGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTCCCCCCTTBCHHHHHHHHHHTCSCGGG
T ss_pred             ccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCCCHHHHHHHHHcCCCCCCCccCCHHHHHHHHHHcCCChhh
Confidence            3699999999888999999999999999998768899988777777777766655544444    456777888899999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||++.++.+
T Consensus       263 Rps~~ell~  271 (327)
T 3poz_A          263 RPKFRELII  271 (327)
T ss_dssp             SCCHHHHHH
T ss_pred             CCCHHHHHH
Confidence            999999864

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=99.66  E-value=6.9e-16  Score=82.17  Aligned_cols=84  Identities=18%  Similarity=0.341  Sum_probs=69.1

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC-------CCCCCChHHHHHHHhhC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRL-------NRPANCSHLIRSRNRLT   74 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-------~~~~~~~~~~~~~l~~~   74 (88)
                      +.|++||.+.+..++.++|+|++|++++++++ |..||......+....+..+...       ..+..+.+++..|+..+
T Consensus       171 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~-g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~l~~d  249 (304)
T 2jam_A          171 PGYVAPEVLAQKPYSKAVDCWSIGVITYILLC-GYPPFYEETESKLFEKIKEGYYEFESPFWDDISESAKDFICHLLEKD  249 (304)
T ss_dssp             CCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHH-SSCTTTTSCHHHHHHHHHHCCCCCCTTTTTTSCHHHHHHHHHHHCSS
T ss_pred             CCccChHHhccCCCCchhhHHHHHHHHHHHHH-CCCCCCCCCHHHHHHHHHcCCCCCCccccccCCHHHHHHHHHHcCCC
Confidence            56999999988888999999999999999999 99999888877777777655321       12334567888999999


Q ss_pred             cccCCChhhhhh
Q psy8478          75 ENKAPSAVSKKR   86 (88)
Q Consensus        75 ~~~rp~~~~~~~   86 (88)
                      |.+||++.++++
T Consensus       250 p~~Rps~~~~l~  261 (304)
T 2jam_A          250 PNERYTCEKALS  261 (304)
T ss_dssp             TTTSCCHHHHHT
T ss_pred             hhHCcCHHHHhc
Confidence            999999999864

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=99.66  E-value=2.5e-16  Score=85.98  Aligned_cols=84  Identities=17%  Similarity=0.284  Sum_probs=66.4

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCC----------------------
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNR----------------------   59 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----------------------   59 (88)
                      +.|++||.+.+..++.++|+|++|++++++++ |..||.+.+..+....+......+.                      
T Consensus       190 ~~y~aPE~~~~~~~~~~~DiwslG~il~el~~-g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (371)
T 2xrw_A          190 RYYRAPEVILGMGYKENVDIWSVGCIMGEMIK-GGVLFPGTDHIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYA  268 (371)
T ss_dssp             CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHH-SSCSSCCSSHHHHHHHHHC-CCCCCHHHHTTSCHHHHHHHHSSCCCC
T ss_pred             CCccCHHHhcCCCCCchHhHHHHHHHHHHHHh-CCCCCCCCCHHHHHHHHHHHhCCCCHHHHHHhhhHHHHHHhhCcccc
Confidence            46999999988888999999999999999999 9999988887766666543221110                      


Q ss_pred             -----------------------CCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          60 -----------------------PANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        60 -----------------------~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                                             +..+.+++.+||..+|.+|||++++++
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~  318 (371)
T 2xrw_A          269 GYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQ  318 (371)
T ss_dssp             CCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             ccchhhhcccccCcccccccccccHHHHHHHHHHCcCChhhCCCHHHHhC
Confidence                                   112457888999999999999999865

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=99.66  E-value=4.7e-16  Score=85.08  Aligned_cols=85  Identities=35%  Similarity=0.645  Sum_probs=69.2

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCC----ChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN----CSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~l~~~~~~   77 (88)
                      +.|++||.+....++.++|+|++|++++++++.|..||......+....+..+.+.+.+..    +.+++..|+..+|.+
T Consensus       214 ~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~dp~~  293 (373)
T 2qol_A          214 IRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSNQDVIKAVDEGYRLPPPMDCPAALYQLMLDCWQKDRNN  293 (373)
T ss_dssp             CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTCCHHHHHHHHHTTEECCCCTTCBHHHHHHHHHHTCSSGGG
T ss_pred             CCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCccccHHHHHHHHHHhCcChhh
Confidence            3599999998888999999999999999988668999988888888877776655544444    446677888899999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||++.++.+
T Consensus       294 RPs~~~i~~  302 (373)
T 2qol_A          294 RPKFEQIVS  302 (373)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHHH
Confidence            999999865

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=99.65  E-value=4.3e-16  Score=84.68  Aligned_cols=84  Identities=21%  Similarity=0.381  Sum_probs=68.5

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC---CCCCCChHHHHHHHhhCcccC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRL---NRPANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~l~~~~~~r   78 (88)
                      +.|++||.+.+..++.++|+|++|++++++++ |..||.+.+..+....+..+...   ..+..+.+++.+||..+|.+|
T Consensus       202 ~~y~aPE~~~~~~~~~~~DiwslG~il~ell~-g~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~~lL~~dp~~R  280 (350)
T 1rdq_E          202 PEALAPEIILSKGYNKAVDWWALGVLIYEMAA-GYPPFFADQPIQIYEKIVSGKVRFPSHFSSDLKDLLRNLLQVDLTKR  280 (350)
T ss_dssp             GGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHH-SSCSSCCSSHHHHHHHHHHCCCCCCTTCCHHHHHHHHHHSCSCTTTC
T ss_pred             ccccCHHHhcCCCCCCcCCEecccHhHhHHhh-CCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHhhcCHHhc
Confidence            57999999988889999999999999999999 99999988888888888665321   223445678888899999999


Q ss_pred             CC-----hhhhhh
Q psy8478          79 PS-----AVSKKR   86 (88)
Q Consensus        79 p~-----~~~~~~   86 (88)
                      |+     ++++.+
T Consensus       281 ~~~~~~~~~ei~~  293 (350)
T 1rdq_E          281 FGNLKNGVNDIKN  293 (350)
T ss_dssp             TTSSTTTTHHHHT
T ss_pred             cCCccCCHHHHHh
Confidence            98     776653

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=99.65  E-value=2e-16  Score=86.94  Aligned_cols=84  Identities=19%  Similarity=0.337  Sum_probs=68.1

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC-------CCCCCChHHHHHHHhhC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRL-------NRPANCSHLIRSRNRLT   74 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-------~~~~~~~~~~~~~l~~~   74 (88)
                      +.|++||.+....++.++|+|++|++++++++ |..||.+....+....+......       ..+..+.+++..||..+
T Consensus       214 ~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~d  292 (387)
T 1kob_A          214 AEFAAPEIVDREPVGFYTDMWAIGVLGYVLLS-GLSPFAGEDDLETLQNVKRCDWEFDEDAFSSVSPEAKDFIKNLLQKE  292 (387)
T ss_dssp             GGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHH-SCCSSCCSSHHHHHHHHHHCCCCCCSSTTTTSCHHHHHHHHTTSCSS
T ss_pred             CCccCchhccCCCCCCcccEeeHhHHHHHHHh-CCCCCCCCCHHHHHHHHHhCCCCCCccccccCCHHHHHHHHHHcCCC
Confidence            57999999988888999999999999999999 99999988877777777554311       12334566777888889


Q ss_pred             cccCCChhhhhh
Q psy8478          75 ENKAPSAVSKKR   86 (88)
Q Consensus        75 ~~~rp~~~~~~~   86 (88)
                      |.+||++.++++
T Consensus       293 P~~Rpt~~ell~  304 (387)
T 1kob_A          293 PRKRLTVHDALE  304 (387)
T ss_dssp             GGGSCCHHHHHT
T ss_pred             hhHCcCHHHHhh
Confidence            999999999875

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=99.65  E-value=4.5e-16  Score=82.10  Aligned_cols=84  Identities=21%  Similarity=0.408  Sum_probs=68.6

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC-CCC------CCCCChHHHHHHHhhC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG-RLN------RPANCSHLIRSRNRLT   74 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~------~~~~~~~~~~~~l~~~   74 (88)
                      +.|++||.+....++.+.|+|++|++++++++ |..||......+....+..+. ..+      .+..+.+++..|+..+
T Consensus       171 ~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~d  249 (284)
T 3kk8_A          171 PGYLSPEVLKKDPYSKPVDIWACGVILYILLV-GYPPFWDEDQHRLYAQIKAGAYDYPSPEWDTVTPEAKSLIDSMLTVN  249 (284)
T ss_dssp             GGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHH-SSCSSCCSSHHHHHHHHHHTCCCCCTTTTTTSCHHHHHHHHHHSCSS
T ss_pred             cCCcCchhhcCCCCCcccchHHHHHHHHHHHH-CCCCCCCCchhHHHHHHHhccccCCchhhcccCHHHHHHHHHHcccC
Confidence            46899999988888999999999999999999 999998888877777775443 211      2334567888899999


Q ss_pred             cccCCChhhhhh
Q psy8478          75 ENKAPSAVSKKR   86 (88)
Q Consensus        75 ~~~rp~~~~~~~   86 (88)
                      |.+||++.++++
T Consensus       250 p~~Rps~~~~l~  261 (284)
T 3kk8_A          250 PKKRITADQALK  261 (284)
T ss_dssp             TTTSCCHHHHTT
T ss_pred             hhhCCCHHHHhc
Confidence            999999999875

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=99.65  E-value=2e-16  Score=86.51  Aligned_cols=84  Identities=18%  Similarity=0.315  Sum_probs=68.4

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC-------CCCCCChHHHHHHHhhC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRL-------NRPANCSHLIRSRNRLT   74 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-------~~~~~~~~~~~~~l~~~   74 (88)
                      +.|++||.+....++.++|+|++|++++++++ |..||.+....+....+......       ..+..+.+++.+||..+
T Consensus       252 ~~y~aPE~~~~~~~~~~~DiwslG~il~ellt-g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~d  330 (373)
T 2x4f_A          252 PEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLS-GLSPFLGDNDAETLNNILACRWDLEDEEFQDISEEAKEFISKLLIKE  330 (373)
T ss_dssp             CTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHH-SSCTTCCSSHHHHHHHHHHTCCCSCSGGGTTSCHHHHHHHHTTSCSS
T ss_pred             CcEeChhhccCCCCCcHHhHHHHHHHHHHHHh-CCCCCCCCCHHHHHHHHHhccCCCChhhhccCCHHHHHHHHHHcCCC
Confidence            56999999988888899999999999999999 99999988887777777654321       12344567788888889


Q ss_pred             cccCCChhhhhh
Q psy8478          75 ENKAPSAVSKKR   86 (88)
Q Consensus        75 ~~~rp~~~~~~~   86 (88)
                      |.+||++.++++
T Consensus       331 p~~Rps~~e~l~  342 (373)
T 2x4f_A          331 KSWRISASEALK  342 (373)
T ss_dssp             GGGSCCHHHHHH
T ss_pred             hhhCCCHHHHhc
Confidence            999999999865

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=99.65  E-value=1.1e-15  Score=82.08  Aligned_cols=85  Identities=39%  Similarity=0.873  Sum_probs=69.6

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCC----ChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN----CSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~l~~~~~~   77 (88)
                      +.|++||.+....++.++|+|++|++++++++.|..||......+....+..+.....+..    +.+++..|+..+|.+
T Consensus       209 ~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~  288 (327)
T 2yfx_A          209 VKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMDPPKNCPGPVYRIMTQCWQHQPED  288 (327)
T ss_dssp             GGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGG
T ss_pred             cceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCcCHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHhcCChhh
Confidence            4699999998888899999999999999998768899988887777777776654444444    456777888899999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||++.++.+
T Consensus       289 Rps~~~ll~  297 (327)
T 2yfx_A          289 RPNFAIILE  297 (327)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHHH
Confidence            999999865

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=99.65  E-value=6.8e-16  Score=82.95  Aligned_cols=84  Identities=19%  Similarity=0.360  Sum_probs=65.1

Q ss_pred             CcccCcchhcc-CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC-----------------------
Q psy8478           2 TRWMAPECLVD-GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRL-----------------------   57 (88)
Q Consensus         2 ~~~~~pe~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----------------------   57 (88)
                      +.|++||.+.+ ..++.++|+|++|++++++++ |..||.+....+....+......                       
T Consensus       164 ~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (324)
T 3mtl_A          164 LWYRPPDILLGSTDYSTQIDMWGVGCIFYEMAT-GRPLFPGSTVEEQLHFIFRILGTPTEETWPGILSNEEFKTYNYPKY  242 (324)
T ss_dssp             GGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHH-SSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGCHHHHHTCCCCC
T ss_pred             ccccChhhhcCCCCCCcHHHHHHHHHHHHHHHh-CCCCCCCCCHHHHHHHHHHHhCCCChHhchhhhcchhhcccccccc
Confidence            46899999876 467889999999999999999 99999988877666655321100                       


Q ss_pred             ----------CCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          58 ----------NRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        58 ----------~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                                ..+..+.+++.+||..+|.+|||++++++
T Consensus       243 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  281 (324)
T 3mtl_A          243 RAEALLSHAPRLDSDGADLLTKLLQFEGRNRISAEDAMK  281 (324)
T ss_dssp             CCCCHHHHCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             cchhhhhhcCCCCHHHHHHHHHHcCcCcccCCCHHHHhc
Confidence                      01223457889999999999999999865

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=99.65  E-value=6.5e-16  Score=83.18  Aligned_cols=85  Identities=27%  Similarity=0.608  Sum_probs=69.9

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCC----ChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN----CSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~l~~~~~~   77 (88)
                      +.|++||.+.+..++.++|+|++|++++++++.|..||.+....+....+..+...+.+..    +.+++..|+..+|.+
T Consensus       183 ~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~  262 (327)
T 3lzb_A          183 IKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPICTIDVYMIMRKCWMIDADS  262 (327)
T ss_dssp             GGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTCCCCCCTTBCHHHHHHHHHHTCSSGGG
T ss_pred             ccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHcCCCCCCCccCCHHHHHHHHHHcCCChhH
Confidence            3699999998888999999999999999988768899988877777777766655544444    456777888899999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||++.++.+
T Consensus       263 Rps~~ell~  271 (327)
T 3lzb_A          263 RPKFRELII  271 (327)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHHH
Confidence            999999875

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=99.65  E-value=6.8e-17  Score=86.33  Aligned_cols=82  Identities=18%  Similarity=0.308  Sum_probs=59.2

Q ss_pred             CCcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCC-HHHHHHHHHcCCCCCC----CCCChHHHHHHHhhCc
Q psy8478           1 MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPART-NVDVLHYVRGGGRLNR----PANCSHLIRSRNRLTE   75 (88)
Q Consensus         1 ~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~----~~~~~~~~~~~l~~~~   75 (88)
                      ++.|||||.+.+..|+.++|+||+|++++++++    ||.+.. .......+.....++.    .....+++..||..+|
T Consensus       193 T~~YmAPE~~~~~~y~~~~DiwSlGvilyell~----Pf~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~~L~~dP  268 (299)
T 4g31_A          193 TKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY----PFSTQMERVRTLTDVRNLKFPPLFTQKYPCEYVMVQDMLSPSP  268 (299)
T ss_dssp             CCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHS----CCSSHHHHHHHHHHHHTTCCCHHHHHHCHHHHHHHHHHTCSSG
T ss_pred             CccccCHHHHcCCCCCCHHHHHHHHHHHHHHcc----CCCCccHHHHHHHHHhcCCCCCCCcccCHHHHHHHHHHcCCCh
Confidence            467999999998899999999999999999875    554321 2233334443322211    1123467889999999


Q ss_pred             ccCCChhhhhh
Q psy8478          76 NKAPSAVSKKR   86 (88)
Q Consensus        76 ~~rp~~~~~~~   86 (88)
                      .+|||+.++.+
T Consensus       269 ~~Rps~~eil~  279 (299)
T 4g31_A          269 MERPEAINIIE  279 (299)
T ss_dssp             GGSCCHHHHHT
T ss_pred             hHCcCHHHHhc
Confidence            99999999865

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.65  E-value=4.1e-16  Score=90.55  Aligned_cols=80  Identities=20%  Similarity=0.409  Sum_probs=67.2

Q ss_pred             CCcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC---CCCCCChHHHHHHHhhCccc
Q psy8478           1 MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRL---NRPANCSHLIRSRNRLTENK   77 (88)
Q Consensus         1 ~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~l~~~~~~   77 (88)
                      ++.|+|||.+....|+.++|+|++|++++++++ |..||.+.+..++...|......   ..+..+.+++..||..+|.+
T Consensus       505 T~~Y~APE~l~~~~~~~~~DvwSlGvilyellt-G~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~lL~~dP~~  583 (674)
T 3pfq_A          505 TPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLA-GQAPFEGEDEDELFQSIMEHNVAYPKSMSKEAVAICKGLMTKHPGK  583 (674)
T ss_dssp             CSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHH-SSCSSCCSSHHHHHHHHHSSCCCCCTTSCHHHHHHHHHHSCSSSTT
T ss_pred             CCcccCHhhhcCCCCCccceEechHHHHHHHHc-CCCCCCCCCHHHHHHHHHhCCCCCCccCCHHHHHHHHHHccCCHHH
Confidence            367999999988899999999999999999999 99999998888888888765321   22344667888899999999


Q ss_pred             CCCh
Q psy8478          78 APSA   81 (88)
Q Consensus        78 rp~~   81 (88)
                      |+++
T Consensus       584 R~~~  587 (674)
T 3pfq_A          584 RLGC  587 (674)
T ss_dssp             CTTC
T ss_pred             CCCC
Confidence            9997

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=99.65  E-value=5e-16  Score=90.04  Aligned_cols=83  Identities=18%  Similarity=0.329  Sum_probs=62.8

Q ss_pred             CCcccCcchhcc-CCCCchhhHHHHHHHHHHHHhcCCCCCCCC---CHHHHHHHHHcCCCCCC----CCCChHHHHHHHh
Q psy8478           1 MTRWMAPECLVD-GLFSSQSDVWAFGVLLWEIMSLGQQPYPAR---TNVDVLHYVRGGGRLNR----PANCSHLIRSRNR   72 (88)
Q Consensus         1 ~~~~~~pe~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~----~~~~~~~~~~~l~   72 (88)
                      ++.|||||++.. ..|+.++|+|++|+++|++++ |..||.+.   ...++...+.... ...    +..+.+++..||.
T Consensus       353 Tp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLt-G~~PF~~~~~~~~~~i~~~i~~~~-~~~p~~~S~~a~dLI~~lL~  430 (689)
T 3v5w_A          353 THGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLR-GHSPFRQHKTKDKHEIDRMTLTMA-VELPDSFSPELRSLLEGLLQ  430 (689)
T ss_dssp             CGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHH-SSCTTCGGGCCCHHHHHHHHHHCC-CCCCTTSCHHHHHHHHHHTC
T ss_pred             CcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHh-CCCCCCCCChHHHHHHHHhhcCCC-CCCCccCCHHHHHHHHHHcc
Confidence            478999999974 579999999999999999999 99999753   3344455554432 223    3446678889999


Q ss_pred             hCcccCCC-----hhhhh
Q psy8478          73 LTENKAPS-----AVSKK   85 (88)
Q Consensus        73 ~~~~~rp~-----~~~~~   85 (88)
                      .+|.+|++     ++++.
T Consensus       431 ~dP~~Rl~~~~~ga~ei~  448 (689)
T 3v5w_A          431 RDVNRRLGCLGRGAQEVK  448 (689)
T ss_dssp             SCGGGCTTCSSSTHHHHT
T ss_pred             CCHhHCCCCCCCCHHHHh
Confidence            99999998     46654

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.65  E-value=1.7e-15  Score=81.68  Aligned_cols=85  Identities=32%  Similarity=0.641  Sum_probs=69.7

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCC----ChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN----CSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~l~~~~~~   77 (88)
                      +.|++||.+....++.++|+|++|++++++++.|..||......+....+..+...+.+..    +.+++..|+..+|.+
T Consensus       214 ~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~  293 (333)
T 1mqb_A          214 IRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNHEVMKAINDGFRLPTPMDCPSAIYQLMMQCWQQERAR  293 (333)
T ss_dssp             GGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTTCCCCCCTTCBHHHHHHHHHHTCSSTTT
T ss_pred             ccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccCCHHHHHHHHHCCCcCCCcccCCHHHHHHHHHHcCCChhh
Confidence            3599999998888899999999999999988768899988888888888776655554444    445677788889999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||++.++.+
T Consensus       294 Rps~~~l~~  302 (333)
T 1mqb_A          294 RPKFADIVS  302 (333)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHHH
Confidence            999998865

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=99.65  E-value=1.8e-16  Score=84.80  Aligned_cols=85  Identities=24%  Similarity=0.294  Sum_probs=56.3

Q ss_pred             CCcccCcchhccC------CCCchhhHHHHHHHHHHHHhcCCCCCC----------CC-----CHHHHHHHHHc-CCCCC
Q psy8478           1 MTRWMAPECLVDG------LFSSQSDVWAFGVLLWEIMSLGQQPYP----------AR-----TNVDVLHYVRG-GGRLN   58 (88)
Q Consensus         1 ~~~~~~pe~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~-----~~~~~~~~i~~-~~~~~   58 (88)
                      ++.|+|||.+.+.      .++.++|+||+|+++|++++ |..|+.          ..     ...+....+.. +.++.
T Consensus       175 T~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~t-g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~rp~  253 (303)
T 3hmm_A          175 TKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIAR-RCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPN  253 (303)
T ss_dssp             CGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHH-TBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCC
T ss_pred             cccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHH-CCCCCCccccccccchhcccccchHHHHHHHHhcccCCCC
Confidence            4679999998753      35678999999999999998 755432          11     12333333432 33444


Q ss_pred             CCCC---------ChHHHHHHHhhCcccCCChhhhhh
Q psy8478          59 RPAN---------CSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        59 ~~~~---------~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                      .|..         +.+++..|+..+|.+|||+.++.+
T Consensus       254 ~p~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~  290 (303)
T 3hmm_A          254 IPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKK  290 (303)
T ss_dssp             CCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHH
T ss_pred             CCccccchHHHHHHHHHHHHHcccCHhHCcCHHHHHH
Confidence            4432         224555677778999999999865

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=99.65  E-value=9.8e-16  Score=82.34  Aligned_cols=85  Identities=29%  Similarity=0.565  Sum_probs=71.2

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCC----CCCCChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLN----RPANCSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~l~~~~~~   77 (88)
                      +.|++||.+....++.++|+|++|++++++++.|..||.+....+....+..+....    .+..+.+++..|+..+|.+
T Consensus       181 ~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~  260 (325)
T 3kex_A          181 IKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRLAEVPDLLEKGERLAQPQICTIDVYMVMVKCWMIDENI  260 (325)
T ss_dssp             TTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCTTHHHHHHHTTCBCCCCTTBCTTTTHHHHHHTCSCTTT
T ss_pred             ccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccccCHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHcCCChhh
Confidence            369999999888899999999999999998876889998877777777776654433    3456788999999999999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||++.++.+
T Consensus       261 Rps~~el~~  269 (325)
T 3kex_A          261 RPTFKELAN  269 (325)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHHH
Confidence            999999865

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=99.65  E-value=1e-15  Score=81.03  Aligned_cols=84  Identities=20%  Similarity=0.362  Sum_probs=63.5

Q ss_pred             CcccCcchhccC-CCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHc--CCCC---------------------
Q psy8478           2 TRWMAPECLVDG-LFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRG--GGRL---------------------   57 (88)
Q Consensus         2 ~~~~~pe~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~---------------------   57 (88)
                      +.|++||.+.+. .++.++|+|++|++++++++ |..||.+....+....+..  +...                     
T Consensus       164 ~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (288)
T 1ob3_A          164 LWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVN-GTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYE  242 (288)
T ss_dssp             CTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHH-SSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCC
T ss_pred             ccccCchheeCCCCCCcHHHHHHHHHHHHHHHh-CCCCCCCCCHHHHHHHHHHHHCCCChhhchhhhccccccccccccc
Confidence            569999998764 57889999999999999999 9999988776665555422  1000                     


Q ss_pred             ---------CCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          58 ---------NRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        58 ---------~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                               ..+..+.+++.+|+..+|.+||++.++++
T Consensus       243 ~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~  280 (288)
T 1ob3_A          243 PLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALE  280 (288)
T ss_dssp             CCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             CccHHHHhhhcCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence                     01122347889999999999999999865

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=99.65  E-value=8.5e-16  Score=81.41  Aligned_cols=85  Identities=35%  Similarity=0.654  Sum_probs=69.6

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCC----ChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN----CSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~l~~~~~~   77 (88)
                      +.|++||.+....++.++|+|++|++++++++.|..||.+....+....+..+.....+..    +.+++..|+..+|.+
T Consensus       184 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~  263 (291)
T 1xbb_A          184 VKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMGCPAGCPREMYDLMNLCWTYDVEN  263 (291)
T ss_dssp             GGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSTTT
T ss_pred             ceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCChhh
Confidence            4599999998878888999999999999998768899988888887777776655544444    556777888899999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||++.++.+
T Consensus       264 Rps~~~l~~  272 (291)
T 1xbb_A          264 RPGFAAVEL  272 (291)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHHH
Confidence            999999865

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=99.64  E-value=1.4e-15  Score=81.77  Aligned_cols=84  Identities=17%  Similarity=0.300  Sum_probs=67.2

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCC---CC----CCCCChHHHHHHHhhC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGR---LN----RPANCSHLIRSRNRLT   74 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~----~~~~~~~~~~~~l~~~   74 (88)
                      +.|++||.+....++.+.|+|++|++++++++ |..||.+....+....+.....   ..    .+..+.+++..|+..+
T Consensus       197 ~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~-g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~d  275 (327)
T 3lm5_A          197 PEYLAPEILNYDPITTATDMWNIGIIAYMLLT-HTSPFVGEDNQETYLNISQVNVDYSEETFSSVSQLATDFIQSLLVKN  275 (327)
T ss_dssp             GGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHH-SSCSSCCSSHHHHHHHHHHTCCCCCTTTTTTSCHHHHHHHHHHSCSS
T ss_pred             cCccCCeeecCCCCCchhhHHHHHHHHHHHHh-CCCCCCCCCchHHHHHHHhcccccCchhhcccCHHHHHHHHHHcCCC
Confidence            56999999988888999999999999999999 9999988887777666644321   11    2233556788899999


Q ss_pred             cccCCChhhhhh
Q psy8478          75 ENKAPSAVSKKR   86 (88)
Q Consensus        75 ~~~rp~~~~~~~   86 (88)
                      |.+||+++++++
T Consensus       276 P~~Rpt~~~ll~  287 (327)
T 3lm5_A          276 PEKRPTAEICLS  287 (327)
T ss_dssp             GGGSCCHHHHTT
T ss_pred             hhhCcCHHHHhC
Confidence            999999999864

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=99.64  E-value=4.7e-16  Score=84.63  Aligned_cols=78  Identities=22%  Similarity=0.468  Sum_probs=64.9

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCC----CCChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRP----ANCSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~l~~~~~~   77 (88)
                      +.|++||.+.+..++.++|+|++|++++++++ |..||.+.+..+....+.... ...|    ..+.+++..||..+|.+
T Consensus       185 ~~y~aPE~~~~~~~~~~~DiwslG~il~ell~-G~~Pf~~~~~~~~~~~i~~~~-~~~p~~~s~~~~~li~~lL~~dP~~  262 (353)
T 2i0e_A          185 PDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLA-GQAPFEGEDEDELFQSIMEHN-VAYPKSMSKEAVAICKGLMTKHPGK  262 (353)
T ss_dssp             GGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHH-SSCSSCCSSHHHHHHHHHHCC-CCCCTTSCHHHHHHHHHHTCSCTTS
T ss_pred             ccccChhhhcCCCcCCcccccchHHHHHHHHc-CCCCCCCCCHHHHHHHHHhCC-CCCCCCCCHHHHHHHHHHhhcCHHH
Confidence            56999999988889999999999999999999 999999888888888876553 2233    34567888899999999


Q ss_pred             CCCh
Q psy8478          78 APSA   81 (88)
Q Consensus        78 rp~~   81 (88)
                      ||++
T Consensus       263 R~~~  266 (353)
T 2i0e_A          263 RLGC  266 (353)
T ss_dssp             CTTC
T ss_pred             cCCC
Confidence            9964

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=99.64  E-value=7.8e-16  Score=81.10  Aligned_cols=84  Identities=18%  Similarity=0.337  Sum_probs=68.6

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC---CCCCCChHHHHHHHhhCcccC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRL---NRPANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~l~~~~~~r   78 (88)
                      +.|++||.+.+..++.++|+|++|++++++++ |..||......+....+......   ..+..+.+++..|+..+|.+|
T Consensus       171 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  249 (279)
T 3fdn_A          171 LDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLV-GKPPFEANTYQETYKRISRVEFTFPDFVTEGARDLISRLLKHNPSQR  249 (279)
T ss_dssp             CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHH-SSCTTCCSSHHHHHHHHHHTCCCCCTTSCHHHHHHHHHHCCSSGGGS
T ss_pred             CCccCHhHhccCCCCccchhHhHHHHHHHHHH-CCCCCCCCcHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHhccChhhC
Confidence            56899999988888889999999999999999 99999988877777776544211   123446678888999999999


Q ss_pred             CChhhhhh
Q psy8478          79 PSAVSKKR   86 (88)
Q Consensus        79 p~~~~~~~   86 (88)
                      |++.++++
T Consensus       250 ps~~e~l~  257 (279)
T 3fdn_A          250 PMLREVLE  257 (279)
T ss_dssp             CCHHHHHH
T ss_pred             CCHHHHhh
Confidence            99999875

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.64  E-value=1.5e-15  Score=80.29  Aligned_cols=85  Identities=33%  Similarity=0.727  Sum_probs=68.6

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCCh----HHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPANCS----HLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~~~~~~l~~~~~~   77 (88)
                      +.|++||.+....++.++|+|++|++++++++.|..||......+....+..+.....+..++    +++..|+..+|.+
T Consensus       177 ~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~~l~~~p~~  256 (287)
T 1u59_A          177 LKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQGKRMECPPECPPELYALMSDCWIYKWED  256 (287)
T ss_dssp             GGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTHHHHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGG
T ss_pred             ccccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCHHHHHHHHhcCCcCCCCCCcCHHHHHHHHHHcCCChhh
Confidence            459999999877888999999999999999865889998887777777777665555555444    5666777788999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||++.++.+
T Consensus       257 Rps~~~l~~  265 (287)
T 1u59_A          257 RPDFLTVEQ  265 (287)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHHH
Confidence            999999865

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=99.64  E-value=6e-16  Score=86.21  Aligned_cols=84  Identities=18%  Similarity=0.366  Sum_probs=69.2

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCC-C--CCCCCChHHHHHHHhhCcccC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGR-L--NRPANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~--~~~~~~~~~~~~~l~~~~~~r   78 (88)
                      +.|++||.+.+..++.++|+|++|++++++++ |..||.+....+....+..... .  ..+..+.+++..||..+|.+|
T Consensus       313 ~~y~aPE~~~~~~~~~~~DiwslG~il~ell~-g~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~~~L~~dP~~R  391 (446)
T 4ejn_A          313 PEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMC-GRLPFYNQDHEKLFELILMEEIRFPRTLGPEAKSLLSGLLKKDPKQR  391 (446)
T ss_dssp             GGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHH-SSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSSTTTS
T ss_pred             ccccCHhhcCCCCCCCccchhhhHHHHHHHhh-CCCCCCCCCHHHHHHHHHhCCCCCCccCCHHHHHHHHHHcccCHHHh
Confidence            57999999988889999999999999999999 9999998888877777754421 1  233446678888999999999


Q ss_pred             C-----Chhhhhh
Q psy8478          79 P-----SAVSKKR   86 (88)
Q Consensus        79 p-----~~~~~~~   86 (88)
                      |     +++++++
T Consensus       392 ~~~~~~t~~ell~  404 (446)
T 4ejn_A          392 LGGGSEDAKEIMQ  404 (446)
T ss_dssp             TTCSTTTHHHHHT
T ss_pred             CCCCCCCHHHHHh
Confidence            9     8888864

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=99.64  E-value=6.8e-16  Score=80.95  Aligned_cols=84  Identities=31%  Similarity=0.552  Sum_probs=67.1

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcC-CCCCCCCC----ChHHHHHHHhhCcc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGG-GRLNRPAN----CSHLIRSRNRLTEN   76 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~----~~~~~~~~l~~~~~   76 (88)
                      +.|++||.+.+..++.++|+|++|++++++++ |..||.+.........+... ...+.+..    +.+++..|+..+|.
T Consensus       178 ~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~  256 (271)
T 3dtc_A          178 YAWMAPEVIRASMFSKGSDVWSYGVLLWELLT-GEVPFRGIDGLAVAYGVAMNKLALPIPSTCPEPFAKLMEDCWNPDPH  256 (271)
T ss_dssp             GGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHH-CCCTTTTSCHHHHHHHHHTSCCCCCCCTTCCHHHHHHHHHHTCSSGG
T ss_pred             cceeCHHHhccCCCCchhhHHHHHHHHHHHHh-CCCCCCCCCHHHHHHhhhcCCCCCCCCcccCHHHHHHHHHHhcCCcc
Confidence            56899999988888999999999999999999 99999887776666555433 23333333    55677788889999


Q ss_pred             cCCChhhhhh
Q psy8478          77 KAPSAVSKKR   86 (88)
Q Consensus        77 ~rp~~~~~~~   86 (88)
                      +||++.++.+
T Consensus       257 ~Rps~~e~l~  266 (271)
T 3dtc_A          257 SRPSFTNILD  266 (271)
T ss_dssp             GSCCHHHHHH
T ss_pred             cCcCHHHHHH
Confidence            9999999875

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=99.64  E-value=5.3e-16  Score=84.90  Aligned_cols=85  Identities=36%  Similarity=0.686  Sum_probs=67.4

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCC----hHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPANC----SHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~----~~~~~~~l~~~~~~   77 (88)
                      +.|++||.+....++.++|+|++|++++++++.+..||......+....+..+.+...|..+    .+++..|+..+|.+
T Consensus       260 ~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~li~~cl~~dp~~  339 (373)
T 3c1x_A          260 VKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYCPDPLYEVMLKCWHPKAEM  339 (373)
T ss_dssp             GGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCSSCHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGG
T ss_pred             ccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCChhh
Confidence            36999999988889999999999999999998677888776665666666666555445444    45667788888999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||++.++.+
T Consensus       340 RPs~~ell~  348 (373)
T 3c1x_A          340 RPSFSELVS  348 (373)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHHH
Confidence            999999865

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=99.64  E-value=7.9e-16  Score=83.55  Aligned_cols=84  Identities=18%  Similarity=0.367  Sum_probs=66.0

Q ss_pred             CcccCcchhc---cCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCC-----CCCCChHHHHHHHhh
Q psy8478           2 TRWMAPECLV---DGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLN-----RPANCSHLIRSRNRL   73 (88)
Q Consensus         2 ~~~~~pe~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~~~~l~~   73 (88)
                      +.|++||.+.   ...++.++|+|++|++++++++ |..||......+....+..+..+.     .+..+.+++..|+..
T Consensus       214 ~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~  292 (348)
T 1u5q_A          214 PYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAE-RKPPLFNMNAMSALYHIAQNESPALQSGHWSEYFRNFVDSCLQK  292 (348)
T ss_dssp             GGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHH-SSCTTTTSCHHHHHHHHHHSCCCCCCCTTSCHHHHHHHHHHTCS
T ss_pred             cceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHh-CCCCCCCCChHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHccc
Confidence            5799999885   4567889999999999999999 999998877766666665443322     233455788889999


Q ss_pred             CcccCCChhhhhh
Q psy8478          74 TENKAPSAVSKKR   86 (88)
Q Consensus        74 ~~~~rp~~~~~~~   86 (88)
                      +|.+||+++++++
T Consensus       293 dP~~Rps~~~ll~  305 (348)
T 1u5q_A          293 IPQDRPTSEVLLK  305 (348)
T ss_dssp             SGGGSCCHHHHTT
T ss_pred             ChhhCcCHHHHhh
Confidence            9999999999865

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=99.64  E-value=7.6e-16  Score=83.11  Aligned_cols=84  Identities=20%  Similarity=0.357  Sum_probs=67.4

Q ss_pred             CcccCcchhcc--CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCC-CC------CCCCChHHHHHHHh
Q psy8478           2 TRWMAPECLVD--GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGR-LN------RPANCSHLIRSRNR   72 (88)
Q Consensus         2 ~~~~~pe~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~------~~~~~~~~~~~~l~   72 (88)
                      +.|++||.+..  ..++.++|+|++|++++++++ |..||.+....+....+..... ..      .+..+.+++.+|+.
T Consensus       238 ~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~  316 (345)
T 3hko_A          238 PYFVAPEVLNTTNESYGPKCDAWSAGVLLHLLLM-GAVPFPGVNDADTISQVLNKKLCFENPNYNVLSPLARDLLSNLLN  316 (345)
T ss_dssp             GGGCCHHHHTCSSSCCCTHHHHHHHHHHHHHHHH-SSCSSCCSSHHHHHHHHHHCCCCTTSGGGGGSCHHHHHHHHHHSC
T ss_pred             ccccCchhhccCCCCCCcHHHHHHHHHHHHHHHH-CCCCCCCCChHHHHHHHHhcccccCCcccccCCHHHHHHHHHHcC
Confidence            46999999875  567889999999999999999 9999988887777766654432 21      23456778889999


Q ss_pred             hCcccCCChhhhhh
Q psy8478          73 LTENKAPSAVSKKR   86 (88)
Q Consensus        73 ~~~~~rp~~~~~~~   86 (88)
                      .+|.+||++.++++
T Consensus       317 ~~p~~Rps~~~~l~  330 (345)
T 3hko_A          317 RNVDERFDAMRALQ  330 (345)
T ss_dssp             SCTTTSCCHHHHHH
T ss_pred             CChhHCCCHHHHhc
Confidence            99999999999865

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=99.64  E-value=6.1e-16  Score=80.97  Aligned_cols=85  Identities=28%  Similarity=0.494  Sum_probs=65.6

Q ss_pred             CcccCcchhccCCCCc---hhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHH-cCCCCCCCCC----ChHHHHHHHhh
Q psy8478           2 TRWMAPECLVDGLFSS---QSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVR-GGGRLNRPAN----CSHLIRSRNRL   73 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~----~~~~~~~~l~~   73 (88)
                      +.|++||.+.+..+..   ++|+|++|++++++++ |..||......+....+. .+..+..+..    +.+++..|+..
T Consensus       172 ~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~  250 (271)
T 3kmu_A          172 PAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVT-REVPFADLSNMEIGMKVALEGLRPTIPPGISPHVSKLMKICMNE  250 (271)
T ss_dssp             GGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHH-CSCTTTTSCHHHHHHHHHHSCCCCCCCTTCCHHHHHHHHHHTCS
T ss_pred             ccccChhhhccCCCCCCCchhhHHHHHHHHHHHHh-CCCCccccChHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcCC
Confidence            5799999988654443   7999999999999999 999998887776655554 3444444444    45677788888


Q ss_pred             CcccCCChhhhhhc
Q psy8478          74 TENKAPSAVSKKRI   87 (88)
Q Consensus        74 ~~~~rp~~~~~~~~   87 (88)
                      +|.+||++.++.+.
T Consensus       251 ~p~~Rps~~~il~~  264 (271)
T 3kmu_A          251 DPAKRPKFDMIVPI  264 (271)
T ss_dssp             SGGGSCCHHHHHHH
T ss_pred             ChhhCcCHHHHHHH
Confidence            99999999998753

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=99.64  E-value=2.1e-15  Score=80.76  Aligned_cols=85  Identities=44%  Similarity=0.813  Sum_probs=69.2

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCC----ChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN----CSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~l~~~~~~   77 (88)
                      +.|++||.+.+..++.++|+|++|++++++++.|..||.+....+....+..+.....+..    +.+++..|+..+|.+
T Consensus       204 ~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~  283 (322)
T 1p4o_A          204 VRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKM  283 (322)
T ss_dssp             GGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGG
T ss_pred             CCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcCCCccc
Confidence            4599999998888899999999999999999867889988888777777766554444444    456777888899999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||++.++.+
T Consensus       284 Rps~~e~l~  292 (322)
T 1p4o_A          284 RPSFLEIIS  292 (322)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHHH
Confidence            999999865

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=99.64  E-value=2.5e-15  Score=79.95  Aligned_cols=84  Identities=19%  Similarity=0.383  Sum_probs=68.6

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCC----CChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA----NCSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~l~~~~~~   77 (88)
                      +.|++||.+....++.++|+|++|++++++++ |..||......+....+..+.....+.    .+.+++..|+..+|.+
T Consensus       183 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~  261 (303)
T 3a7i_A          183 PFWMAPEVIKQSAYDSKADIWSLGITAIELAR-GEPPHSELHPMKVLFLIPKNNPPTLEGNYSKPLKEFVEACLNKEPSF  261 (303)
T ss_dssp             GGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHH-SSCTTTTSCHHHHHHHHHHSCCCCCCSSCCHHHHHHHHHHCCSSGGG
T ss_pred             cCccCHHHHhcCCCCchhhhHHHHHHHHHHcc-CCCCCCCcCHHHHHHHhhcCCCCCCccccCHHHHHHHHHHcCCChhh
Confidence            46899999988888899999999999999999 999998877777776665554443333    3566778888999999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||++.++.+
T Consensus       262 Rps~~~ll~  270 (303)
T 3a7i_A          262 RPTAKELLK  270 (303)
T ss_dssp             SCCHHHHTT
T ss_pred             CcCHHHHhh
Confidence            999999875

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=99.64  E-value=1.3e-15  Score=82.06  Aligned_cols=84  Identities=18%  Similarity=0.261  Sum_probs=64.9

Q ss_pred             CcccCcchhccC-CCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCC----------------------
Q psy8478           2 TRWMAPECLVDG-LFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLN----------------------   58 (88)
Q Consensus         2 ~~~~~pe~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----------------------   58 (88)
                      +.|++||.+.+. .++.++|+|++|++++++++ |..||.+....+....+......+                      
T Consensus       201 ~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (329)
T 3gbz_A          201 LWYRPPEILLGSRHYSTSVDIWSIACIWAEMLM-KTPLFPGDSEIDQLFKIFEVLGLPDDTTWPGVTALPDWKQSFPKFR  279 (329)
T ss_dssp             CTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHH-SSCSSCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCC
T ss_pred             ccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHH-CCCCcCCCCHHHHHHHHHHHhCCCchhhhhhhhhhhhhhhhhhhhc
Confidence            469999998864 47889999999999999999 999998887766666553211000                      


Q ss_pred             -----------CCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          59 -----------RPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        59 -----------~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                                 .+..+.+++.+||..+|.+|||++++++
T Consensus       280 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  318 (329)
T 3gbz_A          280 GKTLKRVLGALLDDEGLDLLTAMLEMDPVKRISAKNALE  318 (329)
T ss_dssp             CCCHHHHHGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             cccHhhhcccccCHHHHHHHHHHccCChhhCCCHHHHhC
Confidence                       1223447889999999999999999875

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=99.64  E-value=8e-16  Score=81.12  Aligned_cols=85  Identities=32%  Similarity=0.563  Sum_probs=67.7

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCC----ChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN----CSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~l~~~~~~   77 (88)
                      +.|++||.+....++.++|+|++|++++++++.|..||......+....+..+...+.+..    +.+++..|+..+|.+
T Consensus       178 ~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~  257 (281)
T 3cc6_A          178 IKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLENKDVIGVLEKGDRLPKPDLCPPVLYTLMTRCWDYDPSD  257 (281)
T ss_dssp             GGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCGGGHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGG
T ss_pred             cceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCcccCChHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHccCCchh
Confidence            3699999998888899999999999999998658889987666666666665544444443    556777888899999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||++.++.+
T Consensus       258 Rps~~ell~  266 (281)
T 3cc6_A          258 RPRFTELVC  266 (281)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHHH
Confidence            999999865

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.64  E-value=2.3e-15  Score=78.77  Aligned_cols=85  Identities=34%  Similarity=0.662  Sum_probs=69.7

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCC----CChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA----NCSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~l~~~~~~   77 (88)
                      +.|++||.+....++.++|+|++|++++++++.|..||......+....+..+.....+.    .+.+++..|+..+|.+
T Consensus       169 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~~l~~~p~~  248 (267)
T 3t9t_A          169 VKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGFRLYKPRLASTHVYQIMNHCWRERPED  248 (267)
T ss_dssp             GGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTTCCCCCCTTSCHHHHHHHHHHTCSSGGG
T ss_pred             ccccChhhhcCCCccchhchhhhHHHHHHHhccCCCCCCCCCHHHHHHHHhcCCcCCCCccCcHHHHHHHHHHccCChhh
Confidence            359999999888888999999999999999886788998888888877777665444343    3556778899999999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||++.++.+
T Consensus       249 Rps~~~ll~  257 (267)
T 3t9t_A          249 RPAFSRLLR  257 (267)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHHH
Confidence            999999865

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=99.64  E-value=1.2e-15  Score=80.58  Aligned_cols=86  Identities=37%  Similarity=0.667  Sum_probs=69.4

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCC----ChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN----CSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~l~~~~~~   77 (88)
                      +.|++||.+....++.++|+|++|++++++++.|..||......+....+........+..    +.+++..|+..+|.+
T Consensus       176 ~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~  255 (288)
T 3kfa_A          176 IKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSD  255 (288)
T ss_dssp             GGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGG
T ss_pred             cCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhccCCCCCCCCCCHHHHHHHHHHhCCChhh
Confidence            3599999998888899999999999999998768889987777777777766554444444    456778888899999


Q ss_pred             CCChhhhhhc
Q psy8478          78 APSAVSKKRI   87 (88)
Q Consensus        78 rp~~~~~~~~   87 (88)
                      ||++.++.+.
T Consensus       256 Rps~~~~~~~  265 (288)
T 3kfa_A          256 RPSFAEIHQA  265 (288)
T ss_dssp             SCCHHHHHHH
T ss_pred             CcCHHHHHHH
Confidence            9999998763

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=99.64  E-value=8.9e-16  Score=82.30  Aligned_cols=84  Identities=20%  Similarity=0.385  Sum_probs=64.8

Q ss_pred             CcccCcchhccC-CCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHc--CCC----------------------
Q psy8478           2 TRWMAPECLVDG-LFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRG--GGR----------------------   56 (88)
Q Consensus         2 ~~~~~pe~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~----------------------   56 (88)
                      +.|++||.+.+. .++.++|+|++|++++++++ |..||.+....+....+..  +..                      
T Consensus       172 ~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~-g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (317)
T 2pmi_A          172 LWYRAPDVLMGSRTYSTSIDIWSCGCILAEMIT-GKPLFPGTNDEEQLKLIFDIMGTPNESLWPSVTKLPKYNPNIQQRP  250 (317)
T ss_dssp             CTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHH-SSCSCCCSSHHHHHHHHHHHHCSCCTTTCGGGGGCTTCCTTCCCCC
T ss_pred             ccccCchHhhCCCCCCcHHHHHHHHHHHHHHHh-CCCCCCCCChHHHHHHHHHHhCCCChhHhhhhhhhhhccccccccc
Confidence            569999998764 57889999999999999999 9999988877666655532  100                      


Q ss_pred             -------------CCCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          57 -------------LNRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        57 -------------~~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                                   ...+..+.+++.+||..+|.+|||+.++++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~  293 (317)
T 2pmi_A          251 PRDLRQVLQPHTKEPLDGNLMDFLHGLLQLNPDMRLSAKQALH  293 (317)
T ss_dssp             CCCSHHHHGGGCSSCCCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             chhHHHhhcccccccCCHHHHHHHHHHCCCCcccCCCHHHHhC
Confidence                         011223557888999999999999999865

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=99.64  E-value=6.9e-16  Score=82.57  Aligned_cols=84  Identities=21%  Similarity=0.326  Sum_probs=62.2

Q ss_pred             CcccCcchhcc-CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHc---CCCC--------------------
Q psy8478           2 TRWMAPECLVD-GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRG---GGRL--------------------   57 (88)
Q Consensus         2 ~~~~~pe~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~--------------------   57 (88)
                      +.|++||.+.+ ..++.++|+|++|++++++++ |..||.+....+....+..   ...+                    
T Consensus       183 ~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~-g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (311)
T 3niz_A          183 LWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMIT-GKPLFPGVTDDDQLPKIFSILGTPNPREWPQVQELPLWKQRTFQVF  261 (311)
T ss_dssp             CTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHH-SSCSCCCSSTTTHHHHHHHHHCCCCTTTSGGGTTSHHHHSCCCCCC
T ss_pred             CCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHh-CCCCCCCCChHHHHHHHHHHHCCCChHHhhhhhccchhhhcccccc
Confidence            46899999876 467889999999999999999 9999987655444444321   1100                    


Q ss_pred             ----------CCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          58 ----------NRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        58 ----------~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                                ..+..+.+++.+||..+|.+|||++++++
T Consensus       262 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  300 (311)
T 3niz_A          262 EKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRISARDAMN  300 (311)
T ss_dssp             CCCCHHHHSTTCCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred             cCCcHHHhCcccCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence                      01122346889999999999999999875

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=99.64  E-value=1.2e-15  Score=80.59  Aligned_cols=84  Identities=15%  Similarity=0.266  Sum_probs=67.8

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCC---CCCCCCChHHHHHHHhhCcccC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGR---LNRPANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~l~~~~~~r   78 (88)
                      +.|++||.+.+..++.++|+|++|++++++++ |..||......+....+.....   ...+..+.+++..|+..+|.+|
T Consensus       176 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  254 (284)
T 2vgo_A          176 LDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLV-GMPPFDSPSHTETHRRIVNVDLKFPPFLSDGSKDLISKLLRYHPPQR  254 (284)
T ss_dssp             GGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHH-SSCTTCCSSHHHHHHHHHTTCCCCCTTSCHHHHHHHHHHSCSSGGGS
T ss_pred             CCcCCHHHhccCCCCcccchhhHHHHHHHHHH-CCCCCCCCCHhHHHHHHhccccCCCCcCCHHHHHHHHHHhhcCHhhC
Confidence            46899999988888899999999999999999 9999988877777666654421   1223445678888999999999


Q ss_pred             CChhhhhh
Q psy8478          79 PSAVSKKR   86 (88)
Q Consensus        79 p~~~~~~~   86 (88)
                      |++.++.+
T Consensus       255 ps~~~ll~  262 (284)
T 2vgo_A          255 LPLKGVME  262 (284)
T ss_dssp             CCHHHHHT
T ss_pred             CCHHHHhh
Confidence            99999865

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=99.63  E-value=7.6e-16  Score=84.35  Aligned_cols=80  Identities=21%  Similarity=0.410  Sum_probs=66.6

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCC---CCCCCCChHHHHHHHhhCcccC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGR---LNRPANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~l~~~~~~r   78 (88)
                      +.|++||.+.+..++.++|+|++|++++++++ |..||.+.+..+....+.....   ...+..+.+++.+||..+|.+|
T Consensus       203 ~~y~aPE~~~~~~~~~~~DiwslG~il~ell~-G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~lL~~dp~~R  281 (373)
T 2r5t_A          203 PEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLY-GLPPFYSRNTAEMYDNILNKPLQLKPNITNSARHLLEGLLQKDRTKR  281 (373)
T ss_dssp             CCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHH-SSCTTCCSBHHHHHHHHHHSCCCCCSSSCHHHHHHHHHHTCSSGGGS
T ss_pred             ccccCHHHhCCCCCCchhhhHHHHHHHHHHHc-CCCCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHHcccCHHhC
Confidence            57999999988889999999999999999999 9999998888888888765421   1233456678888999999999


Q ss_pred             CChh
Q psy8478          79 PSAV   82 (88)
Q Consensus        79 p~~~   82 (88)
                      |++.
T Consensus       282 ~~~~  285 (373)
T 2r5t_A          282 LGAK  285 (373)
T ss_dssp             TTTT
T ss_pred             CCCC
Confidence            9974

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=99.63  E-value=2e-16  Score=85.70  Aligned_cols=84  Identities=21%  Similarity=0.441  Sum_probs=66.5

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCC---CCHHHHHHHHHcCCCC-------CCCCCChHHHHHHH
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPA---RTNVDVLHYVRGGGRL-------NRPANCSHLIRSRN   71 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~-------~~~~~~~~~~~~~l   71 (88)
                      +.|++||.+.+..++.++|+|++|++++++++ |..||.+   ....++...+..+...       ..+..+.+++.+|+
T Consensus       184 ~~y~aPE~~~~~~~~~~~DiwslG~il~ell~-g~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L  262 (342)
T 2qr7_A          184 ANFVAPEVLERQGYDAACDIWSLGVLLYTMLT-GYTPFANGPDDTPEEILARIGSGKFSLSGGYWNSVSDTAKDLVSKML  262 (342)
T ss_dssp             SSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-SSCSSCSSTTSCHHHHHHHHHHCCCCCCSTTTTTSCHHHHHHHHHHT
T ss_pred             ccccCHHHhcCCCCCCccCeeeHhHHHHHHhc-CCCCCCCCCcCCHHHHHHHHccCCcccCccccccCCHHHHHHHHHHC
Confidence            56899999987778889999999999999999 9999975   3456667777654321       12344567888999


Q ss_pred             hhCcccCCChhhhhh
Q psy8478          72 RLTENKAPSAVSKKR   86 (88)
Q Consensus        72 ~~~~~~rp~~~~~~~   86 (88)
                      ..+|.+||++.++++
T Consensus       263 ~~dP~~R~t~~~il~  277 (342)
T 2qr7_A          263 HVDPHQRLTAALVLR  277 (342)
T ss_dssp             CSSTTTSCCHHHHTT
T ss_pred             CCChhHCcCHHHHhc
Confidence            999999999998864

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=99.63  E-value=6.2e-16  Score=82.94  Aligned_cols=84  Identities=19%  Similarity=0.316  Sum_probs=68.0

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC-------CCCCCChHHHHHHHhhC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRL-------NRPANCSHLIRSRNRLT   74 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-------~~~~~~~~~~~~~l~~~   74 (88)
                      +.|++||.+.+..++.++|+|++|++++++++ |..||.+....+....+......       ..+..+.+++..|+..+
T Consensus       182 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~-g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~l~~d  260 (321)
T 2a2a_A          182 PEFVAPEIVNYEPLGLEADMWSIGVITYILLS-GASPFLGDTKQETLANITSVSYDFDEEFFSHTSELAKDFIRKLLVKE  260 (321)
T ss_dssp             GGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHH-SCCSSCCSSHHHHHHHHHTTCCCCCHHHHTTCCHHHHHHHHTTSCSS
T ss_pred             CCccCcccccCCCCCCccccHHHHHHHHHHHH-CCCCCCCCCHHHHHHHHHhcccccChhhhcccCHHHHHHHHHHcCCC
Confidence            46999999988888999999999999999999 99999888877777777654321       12334567778888889


Q ss_pred             cccCCChhhhhh
Q psy8478          75 ENKAPSAVSKKR   86 (88)
Q Consensus        75 ~~~rp~~~~~~~   86 (88)
                      |.+||++.++++
T Consensus       261 p~~Rps~~e~l~  272 (321)
T 2a2a_A          261 TRKRLTIQEALR  272 (321)
T ss_dssp             TTTSCCHHHHHH
T ss_pred             hhhCcCHHHHhc
Confidence            999999999865

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=99.63  E-value=2.6e-15  Score=79.33  Aligned_cols=85  Identities=27%  Similarity=0.514  Sum_probs=66.1

Q ss_pred             CcccCcchhcc-CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC--CCCCCCCChHHHHHHHhhCcccC
Q psy8478           2 TRWMAPECLVD-GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG--RLNRPANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         2 ~~~~~pe~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~l~~~~~~r   78 (88)
                      +.|++||.+.. ..++.++|+|++|++++++++.+..|+................  ....+..+.+++..|+..+|.+|
T Consensus       181 ~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~R  260 (289)
T 4fvq_A          181 IPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSALDSQRKLQFYEDRHQLPAPKAAELANLINNCMDYEPDHR  260 (289)
T ss_dssp             TTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTTCCCCCCSSCTTHHHHHHHSCSSGGGS
T ss_pred             CcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCCCCccccchHHHHHHhhccCCCCCCCCHHHHHHHHHHcCCChhHC
Confidence            46999999987 5688899999999999999994556666556555544444332  23446778899999999999999


Q ss_pred             CChhhhhh
Q psy8478          79 PSAVSKKR   86 (88)
Q Consensus        79 p~~~~~~~   86 (88)
                      |++.++.+
T Consensus       261 ps~~~ll~  268 (289)
T 4fvq_A          261 PSFRAIIR  268 (289)
T ss_dssp             CCHHHHHH
T ss_pred             cCHHHHHH
Confidence            99999865

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=99.63  E-value=1.4e-15  Score=80.14  Aligned_cols=85  Identities=36%  Similarity=0.717  Sum_probs=68.5

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCC----ChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN----CSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~l~~~~~~   77 (88)
                      +.|++||.+....++.++|+|++|++++++++.|..||......+....+..+.....+..    +.+++..|+..+|.+
T Consensus       178 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~  257 (278)
T 1byg_A          178 VKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKMDAPDGCPPAVYEVMKNCWHLDAAM  257 (278)
T ss_dssp             TTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGGGHHHHHTTTCCCCCCTTCCHHHHHHHHHHTCSSGGG
T ss_pred             ccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhcCCCCCCcccCCHHHHHHHHHHhcCChhh
Confidence            4699999998888899999999999999998658889987777777777766554444444    456777888999999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||++.++.+
T Consensus       258 Rps~~~l~~  266 (278)
T 1byg_A          258 RPSFLQLRE  266 (278)
T ss_dssp             SCCHHHHHH
T ss_pred             CCCHHHHHH
Confidence            999999865

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=99.63  E-value=1.2e-15  Score=82.18  Aligned_cols=83  Identities=16%  Similarity=0.325  Sum_probs=66.8

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCC---CCCCCCChHHHHHHHhhCcccC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGR---LNRPANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~l~~~~~~r   78 (88)
                      +.|++||.+....++.++|+|++|++++++++ |..||.+....+....+.....   ...+..+.+++.+|+..+|.+|
T Consensus       185 ~~y~aPE~~~~~~~~~~~DiwslG~il~el~~-g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~~~L~~dp~~R  263 (327)
T 3a62_A          185 IEYMAPEILMRSGHNRAVDWWSLGALMYDMLT-GAPPFTGENRKKTIDKILKCKLNLPPYLTQEARDLLKKLLKRNAASR  263 (327)
T ss_dssp             CTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHH-SSCSCCCSSHHHHHHHHHHTCCCCCTTSCHHHHHHHHHHSCSCGGGS
T ss_pred             cCccCHhhCcCCCCCCcccchhHHHHHHHHHH-CCCCCCCCCHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHhcCHhhc
Confidence            56999999988888999999999999999999 9999998888777777765421   1233456678888999999999


Q ss_pred             C-----Chhhhh
Q psy8478          79 P-----SAVSKK   85 (88)
Q Consensus        79 p-----~~~~~~   85 (88)
                      |     ++++++
T Consensus       264 ~~~~~~~~~e~l  275 (327)
T 3a62_A          264 LGAGPGDAGEVQ  275 (327)
T ss_dssp             TTSSTTTHHHHH
T ss_pred             cCCCCCCHHHHH
Confidence            9     555654

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=99.63  E-value=7.9e-16  Score=86.36  Aligned_cols=83  Identities=27%  Similarity=0.460  Sum_probs=68.5

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCC-CC------CCCCChHHHHHHHhhC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGR-LN------RPANCSHLIRSRNRLT   74 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~------~~~~~~~~~~~~l~~~   74 (88)
                      +.|++||.+.+ .++.++|+|++|++++++++ |..||.+....+....+..+.. ..      .+..+.+++..||..+
T Consensus       192 ~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~-g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~d  269 (484)
T 3nyv_A          192 AYYIAPEVLHG-TYDEKCDVWSTGVILYILLS-GCPPFNGANEYDILKKVEKGKYTFELPQWKKVSESAKDLIRKMLTYV  269 (484)
T ss_dssp             GGTCCHHHHHT-CCCTHHHHHHHHHHHHHHHH-SSCSSCCSSHHHHHHHHHHCCCCCCSGGGGGSCHHHHHHHHHHTCSS
T ss_pred             ccccCceeecC-CCCCcceeHHHHHHHHHHHH-CCCCCCCCCHHHHHHHHHcCCCCCCCcccccCCHHHHHHHHHHCCCC
Confidence            57999998865 68889999999999999999 9999998888888888866532 22      2334667888999999


Q ss_pred             cccCCChhhhhh
Q psy8478          75 ENKAPSAVSKKR   86 (88)
Q Consensus        75 ~~~rp~~~~~~~   86 (88)
                      |.+|||+.++++
T Consensus       270 p~~R~s~~e~l~  281 (484)
T 3nyv_A          270 PSMRISARDALD  281 (484)
T ss_dssp             GGGSCCHHHHHT
T ss_pred             hhHCcCHHHHhh
Confidence            999999999864

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=99.63  E-value=1.1e-15  Score=81.50  Aligned_cols=85  Identities=38%  Similarity=0.764  Sum_probs=69.0

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCC----ChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN----CSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~l~~~~~~   77 (88)
                      +.|++||.+.+..++.++|+|++|++++++++.|..||.+....+....+..+.....+..    +.+++..|+..+|.+
T Consensus       216 ~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~  295 (314)
T 2ivs_A          216 VKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIPPERLFNLLKTGHRMERPDNCSEEMYRLMLQCWKQEPDK  295 (314)
T ss_dssp             GGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGG
T ss_pred             ccccChhhhcCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHhhcCCcCCCCccCCHHHHHHHHHHccCChhh
Confidence            4599999998888889999999999999998768889988777777777766654444444    456777888899999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||++.++.+
T Consensus       296 Rps~~~l~~  304 (314)
T 2ivs_A          296 RPVFADISK  304 (314)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHHH
Confidence            999999865

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=99.63  E-value=2.1e-15  Score=87.48  Aligned_cols=85  Identities=36%  Similarity=0.680  Sum_probs=70.6

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCC----hHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPANC----SHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~----~~~~~~~l~~~~~~   77 (88)
                      +.|+|||.+....++.++|+|++|++++++++.|..||.+....+....+..+.+.+.+..+    .+++.+|+..+|.+
T Consensus       556 ~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~~l~~dP~~  635 (656)
T 2j0j_A          556 IKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSR  635 (656)
T ss_dssp             GGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGG
T ss_pred             cceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHcCCCCCCCccccHHHHHHHHHHcCCChhH
Confidence            46999999988889999999999999999986588999988888888888776655555554    45677788889999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||++.++.+
T Consensus       636 RPs~~el~~  644 (656)
T 2j0j_A          636 RPRFTELKA  644 (656)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHHH
Confidence            999999865

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=99.63  E-value=9.2e-16  Score=86.25  Aligned_cols=84  Identities=17%  Similarity=0.372  Sum_probs=68.3

Q ss_pred             CcccCcchhccCCC-CchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC---CCCCCChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLF-SSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRL---NRPANCSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~l~~~~~~   77 (88)
                      +.|++||.+.+..+ +.++|+|++|++++++++ |..||.+.........+..+...   ..+..+.+++..|+..+|.+
T Consensus       179 ~~y~aPE~~~~~~~~~~~~DiwSlGvil~ellt-G~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~Li~~~L~~dP~~  257 (476)
T 2y94_A          179 PNYAAPEVISGRLYAGPEVDIWSSGVILYALLC-GTLPFDDDHVPTLFKKICDGIFYTPQYLNPSVISLLKHMLQVDPMK  257 (476)
T ss_dssp             STTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHH-SSCSSCCSSSHHHHHHHHTTCCCCCTTCCHHHHHHHHHHTCSSTTT
T ss_pred             cCeEChhhccCCCCCCCcceehhhHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCCcCCCccCCHHHHHHHHHHcCCCchh
Confidence            57999999987765 678999999999999999 99999888777777777655321   12345667888999999999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      |||+.++.+
T Consensus       258 Rpt~~eil~  266 (476)
T 2y94_A          258 RATIKDIRE  266 (476)
T ss_dssp             SCCHHHHHT
T ss_pred             CcCHHHHHh
Confidence            999999865

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=99.63  E-value=9.1e-16  Score=83.30  Aligned_cols=83  Identities=20%  Similarity=0.360  Sum_probs=65.8

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC-------CCCCCChHHHHHHHhhC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRL-------NRPANCSHLIRSRNRLT   74 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-------~~~~~~~~~~~~~l~~~   74 (88)
                      +.|++||.+....++.++|+|++|++++++++ |..||.+. ..+....+..+...       ..+..+.+++.+||..+
T Consensus       197 ~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~-g~~pf~~~-~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~d  274 (351)
T 3c0i_A          197 PHFMAPEVVKREPYGKPVDVWGCGVILFILLS-GCLPFYGT-KERLFEGIIKGKYKMNPRQWSHISESAKDLVRRMLMLD  274 (351)
T ss_dssp             GGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHH-SSCSSCSS-HHHHHHHHHHTCCCCCHHHHTTSCHHHHHHHHHHTCSS
T ss_pred             cCccCHHHHcCCCCCchHhhHHHHHHHHHHHH-CCCCCCCc-HHHHHHHHHcCCCCCCccccccCCHHHHHHHHHHCCCC
Confidence            57999999988888999999999999999999 99999764 34455555444221       23445677888999999


Q ss_pred             cccCCChhhhhh
Q psy8478          75 ENKAPSAVSKKR   86 (88)
Q Consensus        75 ~~~rp~~~~~~~   86 (88)
                      |.+||++.++++
T Consensus       275 P~~R~s~~e~l~  286 (351)
T 3c0i_A          275 PAERITVYEALN  286 (351)
T ss_dssp             TTTSCCHHHHHT
T ss_pred             hhHCcCHHHHhc
Confidence            999999999864

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=99.63  E-value=6.4e-16  Score=83.87  Aligned_cols=84  Identities=17%  Similarity=0.346  Sum_probs=64.1

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHH-HHHHHHcCCCC-------CCCCCChHHHHHHHhh
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVD-VLHYVRGGGRL-------NRPANCSHLIRSRNRL   73 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~-------~~~~~~~~~~~~~l~~   73 (88)
                      +.|++||.+.+..++.++|+|++|++++++++ |..||......+ ....+..+...       ..+..+.+++.+|+..
T Consensus       214 ~~y~aPE~~~~~~~~~~~DiwslG~il~ell~-g~~pf~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~  292 (349)
T 2w4o_A          214 PGYCAPEILRGCAYGPEVDMWSVGIITYILLC-GFEPFYDERGDQFMFRRILNCEYYFISPWWDEVSLNAKDLVRKLIVL  292 (349)
T ss_dssp             GGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHH-SSCTTCCTTCHHHHHHHHHTTCCCCCTTTTTTSCHHHHHHHHTTSCS
T ss_pred             CCccCHHHhcCCCCCcccchHHHHHHHHHHHh-CCCCCCCCcccHHHHHHHHhCCCccCCchhhhCCHHHHHHHHHHccC
Confidence            56999999988888999999999999999999 999987655433 55555544221       1223455677788888


Q ss_pred             CcccCCChhhhhh
Q psy8478          74 TENKAPSAVSKKR   86 (88)
Q Consensus        74 ~~~~rp~~~~~~~   86 (88)
                      +|.+||++.++++
T Consensus       293 dP~~Rpt~~e~l~  305 (349)
T 2w4o_A          293 DPKKRLTTFQALQ  305 (349)
T ss_dssp             SGGGSCCHHHHHH
T ss_pred             ChhhCcCHHHHhc
Confidence            9999999999865

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=99.63  E-value=1.9e-15  Score=81.42  Aligned_cols=85  Identities=36%  Similarity=0.784  Sum_probs=69.2

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCC----ChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN----CSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~l~~~~~~   77 (88)
                      +.|++||.+.+..++.++|+|++|++++++++.|..||.+....+....+..+.....+..    +.+++..|+..+|.+
T Consensus       223 ~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~  302 (334)
T 2pvf_A          223 VKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLLKEGHRMDKPANCTNELYMMMRDCWHAVPSQ  302 (334)
T ss_dssp             GGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGG
T ss_pred             cceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcCcCCHHHHHHHHhcCCCCCCCccCCHHHHHHHHHHccCChhh
Confidence            4599999998888889999999999999998768899988888877777766655444444    445677788889999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||++.++.+
T Consensus       303 Rps~~ell~  311 (334)
T 2pvf_A          303 RPTFKQLVE  311 (334)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHHH
Confidence            999999865

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=99.63  E-value=2.8e-15  Score=80.37  Aligned_cols=85  Identities=38%  Similarity=0.756  Sum_probs=68.7

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCC----ChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN----CSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~l~~~~~~   77 (88)
                      +.|++||.+.+..++.++|+|++|++++++++.|..||.+....+....+..+.....+..    +.+++..|+..+|.+
T Consensus       203 ~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~  282 (323)
T 3qup_A          203 VKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIENAEIYNYLIGGNRLKQPPECMEEVYDLMYQCWSADPKQ  282 (323)
T ss_dssp             GGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGG
T ss_pred             ccccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCccccChHHHHHHHhcCCCCCCCCccCHHHHHHHHHHccCChhh
Confidence            3699999998888999999999999999988867899988887777777766654444444    455777788888999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||++.++.+
T Consensus       283 Rps~~~l~~  291 (323)
T 3qup_A          283 RPSFTCLRM  291 (323)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHHH
Confidence            999888764

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=99.63  E-value=8.7e-16  Score=85.10  Aligned_cols=84  Identities=23%  Similarity=0.330  Sum_probs=64.2

Q ss_pred             CcccCcchhccC-CCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcC--C----------------C------
Q psy8478           2 TRWMAPECLVDG-LFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGG--G----------------R------   56 (88)
Q Consensus         2 ~~~~~pe~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~----------------~------   56 (88)
                      +.|++||.+.+. .++.++|+|++|++++++++ |..||.+....+.+..+...  .                .      
T Consensus       220 ~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~-G~~pf~~~~~~~~l~~i~~~lg~p~~~~~~~~~~~~~~~~~p~~~~  298 (420)
T 1j1b_A          220 RYYRAPELIFGATDYTSSIDVWSAGCVLAELLL-GQPIFPGDSGVDQLVEIIKVLGTPTREQIREMNPNYTEFKFPQIKA  298 (420)
T ss_dssp             TTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHH-SSCSSCCSSHHHHHHHHHHHHCSCCHHHHHHHCSCCCCCCCCCCCC
T ss_pred             CCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHh-CCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhChhhhhhccCccCC
Confidence            469999998764 68899999999999999999 99999887765555444210  0                0      


Q ss_pred             --------CCCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          57 --------LNRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        57 --------~~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                              ...+..+.+++.+||..+|.+||++.++.+
T Consensus       299 ~~~~~~~~~~~~~~~~~Li~~~L~~dP~~R~t~~e~l~  336 (420)
T 1j1b_A          299 HPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACA  336 (420)
T ss_dssp             CCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             CCHHHhcCCCCCHHHHHHHHHhccCChhHCCCHHHHhC
Confidence                    012334667888999999999999998864

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=99.62  E-value=2.6e-15  Score=79.04  Aligned_cols=85  Identities=35%  Similarity=0.641  Sum_probs=69.2

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCC----CChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA----NCSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~l~~~~~~   77 (88)
                      +.|++||.+....++.++|+|++|++++++++.|..||.+....+....+..+.....+.    .+.+++..|+..+|.+
T Consensus       174 ~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~  253 (279)
T 1qpc_A          174 IKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPED  253 (279)
T ss_dssp             TTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGG
T ss_pred             cCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCcccCHHHHHHHHhcccCCCCcccccHHHHHHHHHHhccChhh
Confidence            358999999877888899999999999999876788998888888877777665444444    3456777888889999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||++.++.+
T Consensus       254 Rps~~~l~~  262 (279)
T 1qpc_A          254 RPTFDYLRS  262 (279)
T ss_dssp             SCCHHHHHH
T ss_pred             CCCHHHHHH
Confidence            999999865

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=99.62  E-value=1.4e-15  Score=85.83  Aligned_cols=83  Identities=24%  Similarity=0.456  Sum_probs=69.3

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC-------CCCCCChHHHHHHHhhC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRL-------NRPANCSHLIRSRNRLT   74 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-------~~~~~~~~~~~~~l~~~   74 (88)
                      +.|++||.+. ..++.++|+|++|++++++++ |..||.+....+....+..+...       ..+..+.+++..||..+
T Consensus       212 ~~y~aPE~~~-~~~~~~~DiwslG~il~~ll~-g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~d  289 (504)
T 3q5i_A          212 AYYIAPEVLK-KKYNEKCDVWSCGVIMYILLC-GYPPFGGQNDQDIIKKVEKGKYYFDFNDWKNISDEAKELIKLMLTYD  289 (504)
T ss_dssp             TTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHH-SSCSSCCSSHHHHHHHHHHCCCCCCHHHHTTSCHHHHHHHHHHTCSS
T ss_pred             cCCCCHHHhc-cCCCchHHHHHHHHHHHHHHh-CCCCCCCCCHHHHHHHHHcCCCCCCccccCCCCHHHHHHHHHHcCCC
Confidence            5799999886 468889999999999999999 99999998888888888765422       23445677889999999


Q ss_pred             cccCCChhhhhh
Q psy8478          75 ENKAPSAVSKKR   86 (88)
Q Consensus        75 ~~~rp~~~~~~~   86 (88)
                      |.+|||++++++
T Consensus       290 p~~R~t~~e~l~  301 (504)
T 3q5i_A          290 YNKRCTAEEALN  301 (504)
T ss_dssp             TTTSCCHHHHHT
T ss_pred             hhHCCCHHHHhc
Confidence            999999999864

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=99.62  E-value=1.5e-15  Score=85.33  Aligned_cols=83  Identities=25%  Similarity=0.471  Sum_probs=68.1

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC-C------CCCCChHHHHHHHhhC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRL-N------RPANCSHLIRSRNRLT   74 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~------~~~~~~~~~~~~l~~~   74 (88)
                      +.|++||.+.+ .++.++|+|++|++++++++ |..||.+....+....+..+... .      .+..+.+++.+||..+
T Consensus       187 ~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~-g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~d  264 (486)
T 3mwu_A          187 AYYIAPEVLRG-TYDEKCDVWSAGVILYILLS-GTPPFYGKNEYDILKRVETGKYAFDLPQWRTISDDAKDLIRKMLTFH  264 (486)
T ss_dssp             GGGCCGGGGGS-CCCHHHHHHHHHHHHHHHHH-SSCSSCCSSHHHHHHHHHHTCCCSCSGGGGGSCHHHHHHHHHHTCSS
T ss_pred             CCCCCHHHhCC-CCCchhhHHHHHHHHHHHHh-CCCCCCCCCHHHHHHHHHhCCCCCCCcccCCCCHHHHHHHHHHcCCC
Confidence            57999999875 58889999999999999999 99999988888888887655321 1      2334667888999999


Q ss_pred             cccCCChhhhhh
Q psy8478          75 ENKAPSAVSKKR   86 (88)
Q Consensus        75 ~~~rp~~~~~~~   86 (88)
                      |.+|||+.++++
T Consensus       265 p~~R~t~~~~l~  276 (486)
T 3mwu_A          265 PSLRITATQCLE  276 (486)
T ss_dssp             TTTSCCHHHHHH
T ss_pred             hhhCcCHHHHhc
Confidence            999999999864

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=99.62  E-value=1.7e-15  Score=81.36  Aligned_cols=85  Identities=38%  Similarity=0.643  Sum_probs=69.6

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCC----CChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA----NCSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~l~~~~~~   77 (88)
                      +.|++||.+....++.++|+|++|++++++++.|..||.+....+....+..+.....+.    .+.+++..|+..+|.+
T Consensus       205 ~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~  284 (327)
T 1fvr_A          205 VRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYRLEKPLNCDDEVYDLMRQCWREKPYE  284 (327)
T ss_dssp             TTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHGGGTCCCCCCTTBCHHHHHHHHHHTCSSGGG
T ss_pred             ccccChhhhccccCCchhcchHHHHHHHHHHcCCCCCCCCCcHHHHHHHhhcCCCCCCCCCCCHHHHHHHHHHccCChhh
Confidence            468999999888888999999999999999865889998888887777776665444443    4556778889999999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||++.++.+
T Consensus       285 Rps~~ell~  293 (327)
T 1fvr_A          285 RPSFAQILV  293 (327)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHHH
Confidence            999999865

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=99.62  E-value=6.2e-15  Score=77.75  Aligned_cols=85  Identities=39%  Similarity=0.633  Sum_probs=69.5

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCC----ChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN----CSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~l~~~~~~   77 (88)
                      +.|++||.+....++.++|+|++|++++++++.|..||......+....+..+.....+..    +.+++..|+..+|.+
T Consensus       185 ~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~  264 (283)
T 3gen_A          185 VRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRLYRPHLASEKVYTIMYSCWHEKADE  264 (283)
T ss_dssp             GGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGG
T ss_pred             cccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCccccChhHHHHHHhcccCCCCCCcCCHHHHHHHHHHccCChhH
Confidence            4599999998888899999999999999998658899988888888888876655444444    456677788888999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||++.++.+
T Consensus       265 Rps~~~ll~  273 (283)
T 3gen_A          265 RPTFKILLS  273 (283)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHHH
Confidence            999999865

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=99.62  E-value=3.9e-15  Score=77.99  Aligned_cols=85  Identities=39%  Similarity=0.624  Sum_probs=68.8

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCC----ChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN----CSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~l~~~~~~   77 (88)
                      +.|++||.+....++.++|+|++|++++++++.|..||......+....+..+.....+..    +.+++..|+..+|.+
T Consensus       169 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~  248 (268)
T 3sxs_A          169 VKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTNSEVVLKVSQGHRLYRPHLASDTIYQIMYSCWHELPEK  248 (268)
T ss_dssp             GGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTTCCCCCCTTSCHHHHHHHHHTTCSSGGG
T ss_pred             cccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCccccChHHHHHHHHcCCCCCCCCcChHHHHHHHHHHcCCChhh
Confidence            3599999998878889999999999999998768899988888777777776655444444    445677788888999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||++.++.+
T Consensus       249 Rps~~~ll~  257 (268)
T 3sxs_A          249 RPTFQQLLS  257 (268)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHHH
Confidence            999999865

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=99.62  E-value=2.5e-15  Score=79.81  Aligned_cols=84  Identities=21%  Similarity=0.280  Sum_probs=65.5

Q ss_pred             CcccCcchhccCC---CCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC-CCC----CCCCChHHHHHHHhh
Q psy8478           2 TRWMAPECLVDGL---FSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG-RLN----RPANCSHLIRSRNRL   73 (88)
Q Consensus         2 ~~~~~pe~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~----~~~~~~~~~~~~l~~   73 (88)
                      +.|++||.+....   ++.++|+|++|++++++++ |..||...........+.... ..+    .+..+.+++..|+..
T Consensus       201 ~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~  279 (298)
T 2zv2_A          201 PAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVF-GQCPFMDERIMCLHSKIKSQALEFPDQPDIAEDLKDLITRMLDK  279 (298)
T ss_dssp             GGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHHH-SSCSSCCSSHHHHHHHHHHCCCCCCSSSCCCHHHHHHHHHHTCS
T ss_pred             ccccChhhhccCCCCCCCchhhhHhHHHHHHHHHH-CCCCCCCccHHHHHHHHhcccCCCCCccccCHHHHHHHHHHhhc
Confidence            5799999987654   3678999999999999999 999998877776666665432 222    234466788889999


Q ss_pred             CcccCCChhhhhh
Q psy8478          74 TENKAPSAVSKKR   86 (88)
Q Consensus        74 ~~~~rp~~~~~~~   86 (88)
                      +|.+||++.++++
T Consensus       280 dp~~R~s~~e~l~  292 (298)
T 2zv2_A          280 NPESRIVVPEIKL  292 (298)
T ss_dssp             CTTTSCCHHHHTT
T ss_pred             ChhhCCCHHHHhc
Confidence            9999999999865

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=99.62  E-value=2.7e-15  Score=79.51  Aligned_cols=83  Identities=18%  Similarity=0.381  Sum_probs=67.1

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCC----CCChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRP----ANCSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~l~~~~~~   77 (88)
                      +.|++||.+....++.++|+|++|++++++++ |..||......+....+..+. ...+    ..+.+++.+|+..+|.+
T Consensus       179 ~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~~l~~~p~~  256 (294)
T 2rku_A          179 PNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLV-GKPPFETSCLKETYLRIKKNE-YSIPKHINPVAASLIQKMLQTDPTA  256 (294)
T ss_dssp             CSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHH-SSCTTCCSSHHHHHHHHHTTC-CCCCTTSCHHHHHHHHHHTCSSGGG
T ss_pred             CCcCCcchhccCCCCchhhHHHHHHHHHHHHh-CCCCCCCCCHHHHHHHHhhcc-CCCccccCHHHHHHHHHHcccChhh
Confidence            45899999988788889999999999999999 999998877776666665442 2223    34566788899999999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||+++++.+
T Consensus       257 Rps~~~ll~  265 (294)
T 2rku_A          257 RPTINELLN  265 (294)
T ss_dssp             SCCGGGGGG
T ss_pred             CcCHHHHhh
Confidence            999999875

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=99.62  E-value=2.1e-15  Score=81.34  Aligned_cols=84  Identities=17%  Similarity=0.328  Sum_probs=67.3

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC---CCCCCChHHHHHHHhhCcccC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRL---NRPANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~l~~~~~~r   78 (88)
                      +.|++||.+....++.+.|+|++|++++++++ |..||......+....+..+...   ..+..+.+++.+|+..+|.+|
T Consensus       205 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~R  283 (335)
T 2owb_A          205 PNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLV-GKPPFETSCLKETYLRIKKNEYSIPKHINPVAASLIQKMLQTDPTAR  283 (335)
T ss_dssp             CSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHH-SSCTTCCSSHHHHHHHHHHTCCCCCTTSCHHHHHHHHHHTCSSGGGS
T ss_pred             ccccCHHHhccCCCCchhhHHHHHHHHHHHHH-CcCCCCCCCHHHHHHHHhcCCCCCCccCCHHHHHHHHHHccCChhHC
Confidence            46999999988888889999999999999999 99999887777666666544211   123345678888999999999


Q ss_pred             CChhhhhh
Q psy8478          79 PSAVSKKR   86 (88)
Q Consensus        79 p~~~~~~~   86 (88)
                      |++.++++
T Consensus       284 ps~~ell~  291 (335)
T 2owb_A          284 PTINELLN  291 (335)
T ss_dssp             CCGGGGGG
T ss_pred             cCHHHHhc
Confidence            99999875

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=99.62  E-value=2e-15  Score=80.10  Aligned_cols=85  Identities=35%  Similarity=0.636  Sum_probs=67.2

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCC----ChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN----CSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~l~~~~~~   77 (88)
                      +.|++||.+.+..++.++|+|++|++++++++.+.+|+......+....+..+.....+..    +.+++..|+..+|.+
T Consensus       196 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~  275 (298)
T 3f66_A          196 VKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYCPDPLYEVMLKCWHPKAEM  275 (298)
T ss_dssp             GGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTSCTTTHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGG
T ss_pred             ccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCccCCHHHHHHHHhcCCCCCCCccCCHHHHHHHHHHcCCChhh
Confidence            3599999998888899999999999999999856677776666666666666654444444    556777888899999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||++.++.+
T Consensus       276 Rps~~ell~  284 (298)
T 3f66_A          276 RPSFSELVS  284 (298)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHHH
Confidence            999999875

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=99.62  E-value=1.6e-15  Score=85.41  Aligned_cols=83  Identities=25%  Similarity=0.496  Sum_probs=68.2

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC-------CCCCCChHHHHHHHhhC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRL-------NRPANCSHLIRSRNRLT   74 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-------~~~~~~~~~~~~~l~~~   74 (88)
                      +.|++||.+. ..++.++|+|++|++++++++ |..||.+....+....+..+...       ..+..+.+++.+||..+
T Consensus       202 ~~y~aPE~l~-~~~~~~~DiwslG~il~~ll~-g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~d  279 (494)
T 3lij_A          202 AYYIAPEVLR-KKYDEKCDVWSIGVILFILLA-GYPPFGGQTDQEILRKVEKGKYTFDSPEWKNVSEGAKDLIKQMLQFD  279 (494)
T ss_dssp             TTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHH-SSCSSCCSSHHHHHHHHHHTCCCCCSGGGTTSCHHHHHHHHHHTCSS
T ss_pred             cCeeCHHHHc-ccCCCchhHHHHHHHHHHHHh-CCCCCCCCCHHHHHHHHHhCCCCCCchhcccCCHHHHHHHHHHCCCC
Confidence            5799999876 468889999999999999999 99999988888888887655322       12334567888999999


Q ss_pred             cccCCChhhhhh
Q psy8478          75 ENKAPSAVSKKR   86 (88)
Q Consensus        75 ~~~rp~~~~~~~   86 (88)
                      |.+|||+.++++
T Consensus       280 p~~R~s~~e~l~  291 (494)
T 3lij_A          280 SQRRISAQQALE  291 (494)
T ss_dssp             TTTSCCHHHHHT
T ss_pred             hhhCccHHHHhc
Confidence            999999999864

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=99.62  E-value=1.1e-15  Score=82.32  Aligned_cols=84  Identities=24%  Similarity=0.483  Sum_probs=55.2

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCC-------HHHHHHHHHcCCCC-------CCCCCChHHH
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPART-------NVDVLHYVRGGGRL-------NRPANCSHLI   67 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~i~~~~~~-------~~~~~~~~~~   67 (88)
                      +.|++||.+....++.++|+|++|++++++++ |..||....       ..+....+..+...       ..+..+.+++
T Consensus       173 ~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~-g~~pf~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li  251 (325)
T 3kn6_A          173 LHYAAPELLNQNGYDESCDLWSLGVILYTMLS-GQVPFQSHDRSLTCTSAVEIMKKIKKGDFSFEGEAWKNVSQEAKDLI  251 (325)
T ss_dssp             -----------CCCCHHHHHHHHHHHHHHHHH-SSCTTC-------CCCHHHHHHHHTTTCCCCCSHHHHTSCHHHHHHH
T ss_pred             cCccCHHHhcCCCCCCccchHHHHHHHHHHHh-CCCCCCCCccccccccHHHHHHHHHcCCCCCCcccccCCCHHHHHHH
Confidence            46899999988889999999999999999999 999997533       24555666544321       1244566788


Q ss_pred             HHHHhhCcccCCChhhhhh
Q psy8478          68 RSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        68 ~~~l~~~~~~rp~~~~~~~   86 (88)
                      ..|+..+|.+||++.++++
T Consensus       252 ~~~L~~dP~~Rpt~~ell~  270 (325)
T 3kn6_A          252 QGLLTVDPNKRLKMSGLRY  270 (325)
T ss_dssp             HHHHCCCTTTCCCTTTSTT
T ss_pred             HHHCCCChhHCCCHHHHhc
Confidence            9999999999999998864

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=99.61  E-value=7.7e-15  Score=78.40  Aligned_cols=84  Identities=23%  Similarity=0.479  Sum_probs=64.6

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCC--CHHHHHHHHHcCCCCCCCC----CChHHHHHHHhhCc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPAR--TNVDVLHYVRGGGRLNRPA----NCSHLIRSRNRLTE   75 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~----~~~~~~~~~l~~~~   75 (88)
                      +.|++||.+.+..++.++|+|++|++++++++ |..||...  ...+....+..+..++.+.    .+.+++.+|+..+|
T Consensus       167 ~~y~aPE~~~~~~~~~~~Di~slG~il~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp  245 (307)
T 2eva_A          167 AAWMAPEVFEGSNYSEKCDVFSWGIILWEVIT-RRKPFDEIGGPAFRIMWAVHNGTRPPLIKNLPKPIESLMTRCWSKDP  245 (307)
T ss_dssp             TTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHH-TCCTTTTTCSSHHHHHHHHHTTCCCCCBTTCCHHHHHHHHHHTCSSG
T ss_pred             CceEChhhhCCCCCCcHHHHHHHHHHHHHHHH-CCCCchhhCccHHHHHHHHhcCCCCCcccccCHHHHHHHHHHhcCCh
Confidence            57999999988888999999999999999999 99999743  3333444444444444333    34567778889999


Q ss_pred             ccCCChhhhhh
Q psy8478          76 NKAPSAVSKKR   86 (88)
Q Consensus        76 ~~rp~~~~~~~   86 (88)
                      .+||++.++.+
T Consensus       246 ~~Rps~~ell~  256 (307)
T 2eva_A          246 SQRPSMEEIVK  256 (307)
T ss_dssp             GGSCCHHHHHH
T ss_pred             hhCcCHHHHHH
Confidence            99999999865

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=99.61  E-value=2.2e-15  Score=81.64  Aligned_cols=84  Identities=14%  Similarity=0.159  Sum_probs=64.4

Q ss_pred             CcccCcchhcc-CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHc---CCCCCC------------------
Q psy8478           2 TRWMAPECLVD-GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRG---GGRLNR------------------   59 (88)
Q Consensus         2 ~~~~~pe~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~~~------------------   59 (88)
                      +.|++||.+.+ ..++.++|+|++|++++++++ |..||.+.........+..   ......                  
T Consensus       192 ~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~-g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (351)
T 3mi9_A          192 LWYRPPELLLGERDYGPPIDLWGAGCIMAEMWT-RSPIMQGNTEQHQLALISQLCGSITPEVWPNVDNYELYEKLELVKG  270 (351)
T ss_dssp             GGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHH-SSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGCGGGTSSCCCSS
T ss_pred             cCccCchhhcCCCCCCcHhHHHHHHHHHHHHHh-CCCCCCCCChHHHHHHHHHHhCCCChhhccccccchhhcccccccc
Confidence            45999998876 457889999999999999999 9999988877666665532   111110                  


Q ss_pred             --------------CCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          60 --------------PANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        60 --------------~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                                    +..+.+++.+||..+|.+|||++++++
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  311 (351)
T 3mi9_A          271 QKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALN  311 (351)
T ss_dssp             CCCCHHHHHHHHHCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             cccCHHHHhhhccCChHHHHHHHHHhcCChhhCCCHHHHhC
Confidence                          112457889999999999999999865

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=99.61  E-value=2.6e-15  Score=78.98  Aligned_cols=83  Identities=22%  Similarity=0.462  Sum_probs=67.4

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC-------CCCCCChHHHHHHHhhC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRL-------NRPANCSHLIRSRNRLT   74 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-------~~~~~~~~~~~~~l~~~   74 (88)
                      +.|++||.+.+ .++.++|+|++|++++++++ |..||......+....+..+...       ..+..+.+++.+|+..+
T Consensus       172 ~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~d  249 (277)
T 3f3z_A          172 PYYVSPQVLEG-LYGPECDEWSAGVMMYVLLC-GYPPFSAPTDSEVMLKIREGTFTFPEKDWLNVSPQAESLIRRLLTKS  249 (277)
T ss_dssp             TTTCCHHHHTT-CBCTTHHHHHHHHHHHHHHH-SSCSSCCSSHHHHHHHHHHCCCCCCHHHHTTSCHHHHHHHHHHTCSS
T ss_pred             CCccChHHhcc-cCCchhhehhHHHHHHHHHH-CCCCCCCCCHHHHHHHHHhCCCCCCchhhhcCCHHHHHHHHHHccCC
Confidence            56899998765 47889999999999999999 99999988887777777655322       23445677888999999


Q ss_pred             cccCCChhhhhh
Q psy8478          75 ENKAPSAVSKKR   86 (88)
Q Consensus        75 ~~~rp~~~~~~~   86 (88)
                      |.+||++.++++
T Consensus       250 p~~R~s~~~~l~  261 (277)
T 3f3z_A          250 PKQRITSLQALE  261 (277)
T ss_dssp             TTTSCCHHHHTT
T ss_pred             hhhCcCHHHHhc
Confidence            999999998864

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=99.61  E-value=6.6e-16  Score=81.87  Aligned_cols=85  Identities=15%  Similarity=0.192  Sum_probs=64.8

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCC---CHHHHHHHHHcCC--------CCCCCCCChHHHHHH
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPAR---TNVDVLHYVRGGG--------RLNRPANCSHLIRSR   70 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~--------~~~~~~~~~~~~~~~   70 (88)
                      +.|++||.+.+..++.++|+|++|++++++++ |..||.+.   ...+....+....        ....+..+.+++..|
T Consensus       182 ~~y~aPE~~~~~~~~~~~Di~slG~il~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~  260 (298)
T 1csn_A          182 ARYMSINTHLGREQSRRDDLEALGHVFMYFLR-GSLPWQGLKAATNKQKYERIGEKKQSTPLRELCAGFPEEFYKYMHYA  260 (298)
T ss_dssp             TTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHH-SSCTTSSCCSCCHHHHHHHHHHHHHHSCHHHHTTTSCHHHHHHHHHH
T ss_pred             cccCCchhhcCCCCChHHHHHHHHHHHHHHHc-CCCCcchhhccccHHHHHHHHhhccCccHHHHHhhCcHHHHHHHHHH
Confidence            56999999988888999999999999999999 99999763   3333333332211        113455677888899


Q ss_pred             HhhCcccCCChhhhhhc
Q psy8478          71 NRLTENKAPSAVSKKRI   87 (88)
Q Consensus        71 l~~~~~~rp~~~~~~~~   87 (88)
                      +..+|.+||++.++.+.
T Consensus       261 l~~dp~~RP~~~~l~~~  277 (298)
T 1csn_A          261 RNLAFDATPDYDYLQGL  277 (298)
T ss_dssp             HHCCTTCCCCHHHHHHH
T ss_pred             hcCCcccCCCHHHHHHH
Confidence            99999999999998653

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=99.61  E-value=2.9e-15  Score=79.99  Aligned_cols=84  Identities=17%  Similarity=0.372  Sum_probs=66.8

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCC------CCCCChHHHHHHHhhCc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLN------RPANCSHLIRSRNRLTE   75 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~l~~~~   75 (88)
                      +.|++||.+....++.++|+|++|++++++++ |..||...........+.......      .+..+.+++..|+..+|
T Consensus       189 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp  267 (314)
T 3com_A          189 PFWMAPEVIQEIGYNCVADIWSLGITAIEMAE-GKPPYADIHPMRAIFMIPTNPPPTFRKPELWSDNFTDFVKQCLVKSP  267 (314)
T ss_dssp             GGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHH-SSCTTTTSCHHHHHHHHHHSCCCCCSSGGGSCHHHHHHHHHHTCSCT
T ss_pred             CCccChhhcCCCCCCccccHHHHHHHHHHHHh-CCCCCCCCChHHHHHHHhcCCCcccCCcccCCHHHHHHHHHHccCCh
Confidence            46899999988888899999999999999999 999998777666655554443221      23345678889999999


Q ss_pred             ccCCChhhhhh
Q psy8478          76 NKAPSAVSKKR   86 (88)
Q Consensus        76 ~~rp~~~~~~~   86 (88)
                      .+||++.++.+
T Consensus       268 ~~Rpt~~~ll~  278 (314)
T 3com_A          268 EQRATATQLLQ  278 (314)
T ss_dssp             TTSCCHHHHTT
T ss_pred             hhCcCHHHHHh
Confidence            99999999865

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=99.61  E-value=4.3e-15  Score=78.77  Aligned_cols=85  Identities=31%  Similarity=0.583  Sum_probs=67.1

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCC----ChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN----CSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~l~~~~~~   77 (88)
                      +.|++||.+....++.++|+|++|++++++++.+.+++......+....+..+...+.+..    +.+++..|+..+|.+
T Consensus       192 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~  271 (298)
T 3pls_A          192 VKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHIDPFDLTHFLAQGRRLPQPEYCPDSLYQVMQQCWEADPAV  271 (298)
T ss_dssp             GGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCGGGHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGG
T ss_pred             ccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCCCccCCHHHHHHHhhcCCCCCCCccchHHHHHHHHHHccCChhh
Confidence            3689999998888899999999999999999955566666666667777766655444444    556778889999999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||++.++.+
T Consensus       272 Rps~~~ll~  280 (298)
T 3pls_A          272 RPTFRVLVG  280 (298)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHHH
Confidence            999998865

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=99.61  E-value=7.7e-16  Score=83.15  Aligned_cols=84  Identities=15%  Similarity=0.251  Sum_probs=63.9

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC-CCC-------------------C--
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG-RLN-------------------R--   59 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~-------------------~--   59 (88)
                      +.|++||.+.+..++.++|+|++|++++++++ |..||......+....+.... ..+                   .  
T Consensus       203 ~~y~aPE~~~~~~~~~~~Di~slG~il~el~~-g~~pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  281 (355)
T 2eu9_A          203 RHYRPPEVILELGWAQPCDVWSIGCILFEYYR-GFTLFQTHENREHLVMMEKILGPIPSHMIHRTRKQKYFYKGGLVWDE  281 (355)
T ss_dssp             GGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHH-SSCSCCCSSHHHHHHHHHHHHCCCCHHHHHHCSCGGGEETTEECCCT
T ss_pred             CcccCCeeeecCCCCCccchHHHHHHHHHHHh-CCCCCCCCCHHHHHHHHHHHcCCCcHHHhhhccchhhhccccccccc
Confidence            56999999988889999999999999999999 999998777655444332110 000                   0  


Q ss_pred             -------------------------CCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          60 -------------------------PANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        60 -------------------------~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                                               +..+.+++..|+..+|.+|||+.++++
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~  333 (355)
T 2eu9_A          282 NSSDGRYVKENCKPLKSYMLQDSLEHVQLFDLMRRMLEFDPAQRITLAEALL  333 (355)
T ss_dssp             TSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred             ccchhccccccCCcccccccccchhHHHHHHHHHHHhcCChhhCcCHHHHhc
Confidence                                     012447889999999999999999864

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=99.61  E-value=2.7e-15  Score=79.50  Aligned_cols=85  Identities=18%  Similarity=0.259  Sum_probs=61.1

Q ss_pred             CcccCcchhccCC-CCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcC--CCC---------------------
Q psy8478           2 TRWMAPECLVDGL-FSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGG--GRL---------------------   57 (88)
Q Consensus         2 ~~~~~pe~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~---------------------   57 (88)
                      +.|++||.+.+.. ++.++|+|++|++++++++.+.+++.+....+....+...  ...                     
T Consensus       165 ~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (292)
T 3o0g_A          165 LWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPA  244 (292)
T ss_dssp             GGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHHHHHHHHHHCCCCTTTCTTGGGSTTCCCCCCCCT
T ss_pred             cCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHhCCCChhhhhhhcccccccccccccC
Confidence            4699999987664 7889999999999999998344446666666555554321  000                     


Q ss_pred             ---------CCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          58 ---------NRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        58 ---------~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                               ..+..+.+++.+||..+|.+|||++++++
T Consensus       245 ~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  282 (292)
T 3o0g_A          245 TTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQ  282 (292)
T ss_dssp             TCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             CcchhhcccccChHHHHHHHHHhccChhhCCCHHHHhc
Confidence                     01122357889999999999999999875

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=99.61  E-value=8e-16  Score=83.42  Aligned_cols=84  Identities=14%  Similarity=0.252  Sum_probs=64.3

Q ss_pred             CcccCcchhccC-CCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCC-C----------------------
Q psy8478           2 TRWMAPECLVDG-LFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGR-L----------------------   57 (88)
Q Consensus         2 ~~~~~pe~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~----------------------   57 (88)
                      +.|++||.+.+. .++.++|+|++|++++++++ |..||.+.........+..... +                      
T Consensus       195 ~~y~aPE~~~~~~~~~~~~Di~slG~il~ell~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (360)
T 3e3p_A          195 RYYRAPELIFGNQHYTTAVDIWSVGCIFAEMML-GEPIFRGDNSAGQLHEIVRVLGCPSREVLRKLNPSHTDVDLYNSKG  273 (360)
T ss_dssp             GGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHH-SSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCTTCCCGGGGCCCC
T ss_pred             cceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHh-CCCCcCCCChHHHHHHHHHHcCCCCHHHHHhcccchhhcccccccc
Confidence            469999998765 47889999999999999999 9999988777666555432100 0                      


Q ss_pred             ------------CCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          58 ------------NRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        58 ------------~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                                  ..+..+.+++.+||..+|.+|||+.++++
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~  314 (360)
T 3e3p_A          274 IPWSNVFSDHSLKDAKEAYDLLSALLQYLPEERMKPYEALC  314 (360)
T ss_dssp             CCHHHHTTTCCCTTHHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred             CCcccccchhhccccHHHHHHHHHHhccCccccCCHHHHhc
Confidence                        01224567888999999999999999865

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=99.61  E-value=2.2e-15  Score=80.50  Aligned_cols=83  Identities=16%  Similarity=0.322  Sum_probs=65.8

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC-------CCCCCChHHHHHHHhhC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRL-------NRPANCSHLIRSRNRLT   74 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-------~~~~~~~~~~~~~l~~~   74 (88)
                      +.|++||.+.+..++.++|+|++|++++++++ |..||.+....+...........       ..+..+.+++..|+..+
T Consensus       183 ~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~d  261 (311)
T 3ork_A          183 AQYLSPEQARGDSVDARSDVYSLGCVLYEVLT-GEPPFTGDSPVSVAYQHVREDPIPPSARHEGLSADLDAVVLKALAKN  261 (311)
T ss_dssp             CTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHH-SSCSCCCSSHHHHHHHHHHCCCCCHHHHSTTCCHHHHHHHHHHTCSS
T ss_pred             cccCCHHHhcCCCCCchHhHHHHHHHHHHHHh-CCCCCCCCChHHHHHHHhcCCCCCcccccCCCCHHHHHHHHHHHhcC
Confidence            56999999988888999999999999999999 99999888776665555433222       13445667888999999


Q ss_pred             cccCCChhhhh
Q psy8478          75 ENKAPSAVSKK   85 (88)
Q Consensus        75 ~~~rp~~~~~~   85 (88)
                      |.+||++.+..
T Consensus       262 P~~R~~~~~~l  272 (311)
T 3ork_A          262 PENRYQTAAEM  272 (311)
T ss_dssp             GGGSCSSHHHH
T ss_pred             HhhChhhHHHH
Confidence            99999876654

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=99.61  E-value=1.7e-15  Score=83.32  Aligned_cols=84  Identities=23%  Similarity=0.394  Sum_probs=64.8

Q ss_pred             CcccCcchhccC-CCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcC--C-----------------------
Q psy8478           2 TRWMAPECLVDG-LFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGG--G-----------------------   55 (88)
Q Consensus         2 ~~~~~pe~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~-----------------------   55 (88)
                      +.|+|||.+.+. .++.++|+|++|++++++++ |..||.+....+....+...  .                       
T Consensus       205 ~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~-g~~pf~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~  283 (394)
T 4e7w_A          205 RYYRAPELIFGATNYTTNIDIWSTGCVMAELMQ-GQPLFPGESGIDQLVEIIKVLGTPSREQIKTMNPNYMEHKFPQIRP  283 (394)
T ss_dssp             GGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHH-SSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCGGGSSSCCCCCCC
T ss_pred             cCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHh-CCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhChhhhhhccccccC
Confidence            469999998764 58899999999999999999 99999988766655544321  0                       


Q ss_pred             -------CCCCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          56 -------RLNRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        56 -------~~~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                             +...+..+.+++.+||..+|.+||++.++.+
T Consensus       284 ~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  321 (394)
T 4e7w_A          284 HPFSKVFRPRTPPDAIDLISRLLEYTPSARLTAIEALC  321 (394)
T ss_dssp             CCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred             CcHHHhccccCCHHHHHHHHHHhCCChhhCCCHHHHhc
Confidence                   0012345668888999999999999998864

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=99.61  E-value=5.8e-16  Score=84.90  Aligned_cols=84  Identities=19%  Similarity=0.374  Sum_probs=60.1

Q ss_pred             CcccCcchhcc--CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC------------------------
Q psy8478           2 TRWMAPECLVD--GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG------------------------   55 (88)
Q Consensus         2 ~~~~~pe~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~------------------------   55 (88)
                      +.|++||.+..  ..++.++|+|++|++++++++ |..||.+....+....+..+.                        
T Consensus       199 ~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (389)
T 3gni_B          199 LPWLSPEVLQQNLQGYDAKSDIYSVGITACELAN-GHVPFKDMPATQMLLEKLNGTVPCLLDTSTIPAEELTMSPSRSVA  277 (389)
T ss_dssp             GGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHH-SSCTTTTCCSTTHHHHC----------------------------
T ss_pred             ccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHH-CCCCCCCCCHHHHHHHHhcCCCCcccccccccccccccccccccc
Confidence            35899999987  568889999999999999999 999997654433322211110                        


Q ss_pred             -------------------------CCCCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          56 -------------------------RLNRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        56 -------------------------~~~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                                               ....+..+.+++..||..+|.+|||+.++++
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpta~ell~  333 (389)
T 3gni_B          278 NSGLSDSLTTSTPRPSNGDSPSHPYHRTFSPHFHHFVEQCLQRNPDARPSASTLLN  333 (389)
T ss_dssp             ----------------------------CCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred             ccccccccccCccccccCCCCCCccccccCHHHHHHHHHHhhcCcccCCCHHHHhc
Confidence                                     0011223556888999999999999999864

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=99.61  E-value=1.9e-15  Score=79.63  Aligned_cols=84  Identities=18%  Similarity=0.320  Sum_probs=67.0

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC-------CCCCCChHHHHHHHhhC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRL-------NRPANCSHLIRSRNRLT   74 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-------~~~~~~~~~~~~~l~~~   74 (88)
                      +.|++||.+....++.++|+|++|++++++++ |..||.+....+....+......       ..+..+.+++.+|+..+
T Consensus       175 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~d  253 (283)
T 3bhy_A          175 PEFVAPEIVNYEPLGLEADMWSIGVITYILLS-GASPFLGETKQETLTNISAVNYDFDEEYFSNTSELAKDFIRRLLVKD  253 (283)
T ss_dssp             GGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHH-SSCTTCCSSHHHHHHHHHTTCCCCCHHHHTTCCHHHHHHHHTTSCSS
T ss_pred             cCccCcceecCCCCCcchhhhhHHHHHHHHHH-CCCCCCCcchHHHHHHhHhcccCCcchhcccCCHHHHHHHHHHccCC
Confidence            46899999988888899999999999999999 99999888877777666544221       12334566777888888


Q ss_pred             cccCCChhhhhh
Q psy8478          75 ENKAPSAVSKKR   86 (88)
Q Consensus        75 ~~~rp~~~~~~~   86 (88)
                      |.+||++.++++
T Consensus       254 p~~Rps~~~~l~  265 (283)
T 3bhy_A          254 PKRRMTIAQSLE  265 (283)
T ss_dssp             GGGSCCHHHHHH
T ss_pred             HhHCcCHHHHHh
Confidence            999999999864

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=99.61  E-value=9.6e-16  Score=82.30  Aligned_cols=84  Identities=20%  Similarity=0.266  Sum_probs=64.0

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC-CCC----------------------
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG-RLN----------------------   58 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~----------------------   58 (88)
                      +.|++||.+.+..++.++|+|++|++++++++ |..||...+..+....+.... ..+                      
T Consensus       198 ~~y~aPE~~~~~~~~~~~Di~slG~il~el~~-g~~pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  276 (339)
T 1z57_A          198 RHYRAPEVILALGWSQPCDVWSIGCILIEYYL-GFTVFPTHDSKEHLAMMERILGPLPKHMIQKTRKRKYFHHDRLDWDE  276 (339)
T ss_dssp             GGGCCHHHHTTSCCCTHHHHHHHHHHHHHHHH-SSCSCCCSCHHHHHHHHHHHHCSCCHHHHHHCSCGGGEETTEECCCT
T ss_pred             ccccChHHhhCCCCCcchhhHHHHHHHHHHHh-CCCCCCCCChHHHHHHHHHHhCCCCHHHHhhccchhHHhhccccccc
Confidence            56999999988889999999999999999999 999998777655544432110 000                      


Q ss_pred             ------------------------CCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          59 ------------------------RPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        59 ------------------------~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                                              .+..+.+++..|+..+|.+||++.++++
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~  328 (339)
T 1z57_A          277 HSSAGRYVSRACKPLKEFMLSQDVEHERLFDLIQKMLEYDPAKRITLREALK  328 (339)
T ss_dssp             TSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred             cccccchhhhcCcchhhhcccchhhHHHHHHHHHHHhCcCcccccCHHHHhc
Confidence                                    0112447888999999999999999865

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=99.61  E-value=8.6e-16  Score=84.70  Aligned_cols=84  Identities=18%  Similarity=0.382  Sum_probs=62.3

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHH----HHHHHHcCC-CCC------CCCCChHHHHHH
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVD----VLHYVRGGG-RLN------RPANCSHLIRSR   70 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~-~~~------~~~~~~~~~~~~   70 (88)
                      +.|++||.+....++.++|+|++|++++++++ |..||.+.....    ....+..+. ..+      .+..+.+++..|
T Consensus       227 ~~y~aPE~~~~~~~~~~~DiwslG~il~ell~-g~~pf~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~  305 (400)
T 1nxk_A          227 PYYVAPEVLGPEKYDKSCDMWSLGVIMYILLC-GYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEEVKMLIRNL  305 (400)
T ss_dssp             CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHH-SSCSCCCCTTCSSCCSHHHHHHHTCCCCCTTTTTTSCHHHHHHHHTT
T ss_pred             CCccCHhhcCCCCCCCcccHHHHHHHHHHHHh-CCCCCCCCccccccHHHHHHHHcCcccCCCcccccCCHHHHHHHHHH
Confidence            56999999988889999999999999999999 999997544221    233343332 221      233456677788


Q ss_pred             HhhCcccCCChhhhhh
Q psy8478          71 NRLTENKAPSAVSKKR   86 (88)
Q Consensus        71 l~~~~~~rp~~~~~~~   86 (88)
                      |..+|.+||++.++++
T Consensus       306 L~~dP~~Rpt~~eil~  321 (400)
T 1nxk_A          306 LKTEPTQRMTITEFMN  321 (400)
T ss_dssp             SCSSGGGSCCHHHHHH
T ss_pred             CCCChhHCcCHHHHhc
Confidence            8888999999999864

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=99.60  E-value=6.5e-15  Score=78.73  Aligned_cols=84  Identities=18%  Similarity=0.285  Sum_probs=68.1

Q ss_pred             CcccCcchhcc---------CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC-----CCCCCChHHH
Q psy8478           2 TRWMAPECLVD---------GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRL-----NRPANCSHLI   67 (88)
Q Consensus         2 ~~~~~pe~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~~~~~~   67 (88)
                      +.|++||.+..         ..++.++|+|++|++++++++ |..||...........+..+..+     ..+..+.+++
T Consensus       198 ~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li  276 (319)
T 2y4i_B          198 LCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHA-REWPFKTQPAEAIIWQMGTGMKPNLSQIGMGKEISDIL  276 (319)
T ss_dssp             GGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHH-SSCSSSSCCHHHHHHHHHTTCCCCCCCSSCCTTHHHHH
T ss_pred             ccccChHHhhhccccccccccCCCchhhHHHHHHHHHHHHh-CCCCCCCCCHHHHHHHhccCCCCCCCcCCCCHHHHHHH
Confidence            45899998864         246789999999999999999 99999888877777776655433     2345677899


Q ss_pred             HHHHhhCcccCCChhhhhh
Q psy8478          68 RSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        68 ~~~l~~~~~~rp~~~~~~~   86 (88)
                      ..|+..+|.+||++.++.+
T Consensus       277 ~~~l~~~p~~Rpt~~~l~~  295 (319)
T 2y4i_B          277 LFCWAFEQEERPTFTKLMD  295 (319)
T ss_dssp             HHHHCSSTTTSCCHHHHHH
T ss_pred             HHHhcCChhhCcCHHHHHH
Confidence            9999999999999999865

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=99.60  E-value=1.1e-16  Score=87.48  Aligned_cols=83  Identities=16%  Similarity=0.248  Sum_probs=61.8

Q ss_pred             CcccCcchhccC-----------CCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCChHHHHHH
Q psy8478           2 TRWMAPECLVDG-----------LFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPANCSHLIRSR   70 (88)
Q Consensus         2 ~~~~~pe~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~   70 (88)
                      +.|++||.+...           .++.++|+|++|++++++++ |..||.+.........+... ....+..+.+++..|
T Consensus       266 ~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DvwSlG~il~ellt-g~~Pf~~~~~~~~~~~~~~~-~~~~~~~~~~li~~~  343 (377)
T 3byv_A          266 RGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLVIYWIWC-ADLPITKDAALGGSEWIFRS-CKNIPQPVRALLEGF  343 (377)
T ss_dssp             TTCCCHHHHHHHTSTHHHHCCEEECCHHHHHHHHHHHHHHHHH-SSCCC------CCSGGGGSS-CCCCCHHHHHHHHHH
T ss_pred             cCccChhhhcccccccccccccccCChhhhHHHHHHHHHHHHH-CCCCCcccccccchhhhhhh-ccCCCHHHHHHHHHH
Confidence            468999999877           78999999999999999999 99999765443333333222 234466777889999


Q ss_pred             HhhCcccCCChhhhhh
Q psy8478          71 NRLTENKAPSAVSKKR   86 (88)
Q Consensus        71 l~~~~~~rp~~~~~~~   86 (88)
                      +..+|.+||++.++.+
T Consensus       344 L~~dp~~Rpt~~e~l~  359 (377)
T 3byv_A          344 LRYPKEDRLLPLQAME  359 (377)
T ss_dssp             TCSSGGGCCCHHHHHT
T ss_pred             cCCCchhCCCHHHHhh
Confidence            9999999999999865

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=99.60  E-value=3.3e-15  Score=80.11  Aligned_cols=84  Identities=20%  Similarity=0.384  Sum_probs=64.0

Q ss_pred             CcccCcchhc-----cCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC-----CCCCCChHHHHHHH
Q psy8478           2 TRWMAPECLV-----DGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRL-----NRPANCSHLIRSRN   71 (88)
Q Consensus         2 ~~~~~pe~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~~~~~~~~~l   71 (88)
                      +.|++||.+.     ...++.++|+|++|++++++++ |..||...........+.....+     ..+..+.+++..|+
T Consensus       193 ~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l  271 (326)
T 2x7f_A          193 PYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAE-GAPPLCDMHPMRALFLIPRNPAPRLKSKKWSKKFQSFIESCL  271 (326)
T ss_dssp             GGGCCHHHHC--------CCTTHHHHHHHHHHHHHHH-SSCTTTTSCHHHHHHHHHHSCCCCCSCSCSCHHHHHHHHHHC
T ss_pred             ccccChhhhccccccCcCCCccchHHHHHHHHHHHHh-CCCCCCCCcHHHHHHHhhcCccccCCccccCHHHHHHHHHHh
Confidence            4689999986     3457789999999999999999 99999877776666655444322     12344667888899


Q ss_pred             hhCcccCCChhhhhh
Q psy8478          72 RLTENKAPSAVSKKR   86 (88)
Q Consensus        72 ~~~~~~rp~~~~~~~   86 (88)
                      ..+|.+||++.++.+
T Consensus       272 ~~dp~~Rps~~~ll~  286 (326)
T 2x7f_A          272 VKNHSQRPATEQLMK  286 (326)
T ss_dssp             CSSGGGSCCHHHHHT
T ss_pred             ccChhhCCCHHHHhh
Confidence            999999999999865

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=99.60  E-value=1.6e-15  Score=83.04  Aligned_cols=84  Identities=18%  Similarity=0.335  Sum_probs=65.0

Q ss_pred             CcccCcchhccC-CCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHc--CCC----------------------
Q psy8478           2 TRWMAPECLVDG-LFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRG--GGR----------------------   56 (88)
Q Consensus         2 ~~~~~pe~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~----------------------   56 (88)
                      +.|++||.+.+. .++.++|+|++|++++++++ |..||.+....+....+..  +.+                      
T Consensus       205 ~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~-g~~pf~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~  283 (383)
T 3eb0_A          205 RFYRAPELMLGATEYTPSIDLWSIGCVFGELIL-GKPLFSGETSIDQLVRIIQIMGTPTKEQMIRMNPHYTEVRFPTLKA  283 (383)
T ss_dssp             SSCCCHHHHTTCSSCCTHHHHHHHHHHHHHHHH-SSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCTTC--CCCCCCCC
T ss_pred             CCccCHHHhcCCCCCCcchhhhhHHHHHHHHHh-CCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhCcccccccCCccCc
Confidence            468999998765 48899999999999999999 9999998877666655532  100                      


Q ss_pred             --------CCCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          57 --------LNRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        57 --------~~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                              ...+..+.+++.+||..+|.+|||+.++.+
T Consensus       284 ~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  321 (383)
T 3eb0_A          284 KDWRKILPEGTPSLAIDLLEQILRYEPDLRINPYEAMA  321 (383)
T ss_dssp             CCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred             ccHHhhCCCCCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence                    012333567888999999999999999864

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=99.60  E-value=7.8e-15  Score=78.35  Aligned_cols=85  Identities=36%  Similarity=0.734  Sum_probs=68.1

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCC----hHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPANC----SHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~----~~~~~~~l~~~~~~   77 (88)
                      +.|++||.+....++.++|+|++|++++++++.|..||.+....+....+..+.....+..+    .+++..|+..+|.+
T Consensus       213 ~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~  292 (313)
T 3brb_A          213 VKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQNHEMYDYLLHGHRLKQPEDCLDELYEIMYSCWRTDPLD  292 (313)
T ss_dssp             GGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHHHTTCCCCCBTTCCHHHHHHHHHTTCSSGGG
T ss_pred             ccccCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccCCHHHHHHHHHcCCCCCCCccccHHHHHHHHHHcCCChhh
Confidence            36899999988888999999999999999988677888877777777777666555444444    45666777788999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||++.++.+
T Consensus       293 Rps~~~l~~  301 (313)
T 3brb_A          293 RPTFSVLRL  301 (313)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHHH
Confidence            999999865

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=99.60  E-value=3.3e-15  Score=80.06  Aligned_cols=84  Identities=19%  Similarity=0.258  Sum_probs=65.3

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCC-------------------------
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGR-------------------------   56 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-------------------------   56 (88)
                      +.|++||.+....++.++|+|++|++++++++ |..||.+....+....+.....                         
T Consensus       183 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~-g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (326)
T 1blx_A          183 LWYRAPEVLLQSSYATPVDLWSVGCIFAEMFR-RKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQP  261 (326)
T ss_dssp             CTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHH-SSCSCCCSSHHHHHHHHHHHHCCCCGGGSCTTCSSCGGGSCCCCCCC
T ss_pred             cceeCHHHHhcCCCCcchhHHHHHHHHHHHHc-CCCCCCCCCHHHHHHHHHHHcCCCCcccCccccccchhhhcccCcch
Confidence            46899999988888999999999999999999 9999988777666655532100                         


Q ss_pred             -----CCCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          57 -----LNRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        57 -----~~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                           ...+..+.+++.+|+..+|.+||++.++++
T Consensus       262 ~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~  296 (326)
T 1blx_A          262 IEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALS  296 (326)
T ss_dssp             GGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             hhhccccCCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence                 011223457888999999999999999864

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=99.60  E-value=1.9e-15  Score=82.57  Aligned_cols=84  Identities=18%  Similarity=0.355  Sum_probs=64.9

Q ss_pred             CcccCcchhcc-CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHc--CCC----------------------
Q psy8478           2 TRWMAPECLVD-GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRG--GGR----------------------   56 (88)
Q Consensus         2 ~~~~~pe~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~----------------------   56 (88)
                      ..|++||.+.+ ..++.++|+|++|++++++++ |..||.+.+..+....+..  +.+                      
T Consensus       189 ~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~-g~~pf~~~~~~~~l~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  267 (367)
T 1cm8_A          189 RWYRAPEVILNWMRYTQTVDIWSVGCIMAEMIT-GKTLFKGSDHLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPE  267 (367)
T ss_dssp             GGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHH-SSCSSCCSSHHHHHHHHHHHHCCCCHHHHHTCSCHHHHHHHHHSCC
T ss_pred             CCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHh-CCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHhhhHHHHHHHHhCCC
Confidence            46899999876 578899999999999999999 9999988877666555432  110                      


Q ss_pred             ----------CCCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          57 ----------LNRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        57 ----------~~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                                ...+..+.+++.+||..+|.+|||++++++
T Consensus       268 ~~~~~~~~~~~~~~~~~~~ll~~mL~~dP~~R~t~~e~l~  307 (367)
T 1cm8_A          268 LEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALA  307 (367)
T ss_dssp             CCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             CCCCCHHHHCCCCCHHHHHHHHHHccCChhHCCCHHHHhc
Confidence                      011234567888999999999999999864

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=99.60  E-value=4.4e-15  Score=79.34  Aligned_cols=84  Identities=15%  Similarity=0.212  Sum_probs=62.6

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCC------CCCCCCChHHHHHHHhhCc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGR------LNRPANCSHLIRSRNRLTE   75 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------~~~~~~~~~~~~~~l~~~~   75 (88)
                      +.|++||.+....++.++|+|++|++++++++ |..||.+.........+.....      ...+..+.+++..|+..+|
T Consensus       199 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP  277 (309)
T 2h34_A          199 LYYMAPERFSESHATYRADIYALTCVLYECLT-GSPPYQGDQLSVMGAHINQAIPRPSTVRPGIPVAFDAVIARGMAKNP  277 (309)
T ss_dssp             GGGCCGGGTCC----CCCHHHHHHHHHHHHHH-SSCSSCSCHHHHHHHHHHSCCCCGGGTSTTCCTHHHHHHHHHTCSSG
T ss_pred             cCccCHHHHcCCCCCchHhHHHHHHHHHHHHH-CCCCCCCchHHHHHHHhccCCCCccccCCCCCHHHHHHHHHhccCCH
Confidence            46999999988888889999999999999999 9999987665544444443322      2245567788899999999


Q ss_pred             ccCC-Chhhhhh
Q psy8478          76 NKAP-SAVSKKR   86 (88)
Q Consensus        76 ~~rp-~~~~~~~   86 (88)
                      .+|| +++++.+
T Consensus       278 ~~Rp~s~~~l~~  289 (309)
T 2h34_A          278 EDRYVTCGDLSA  289 (309)
T ss_dssp             GGSCSSHHHHHH
T ss_pred             HHHHHhHHHHHH
Confidence            9999 8888764

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=99.60  E-value=3.5e-16  Score=82.85  Aligned_cols=85  Identities=12%  Similarity=0.138  Sum_probs=63.5

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCH---HHHHHHHH----cCC----CCCCCCCChHHHHHH
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTN---VDVLHYVR----GGG----RLNRPANCSHLIRSR   70 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~----~~~----~~~~~~~~~~~~~~~   70 (88)
                      +.|++||.+.+..++.++|+|++|++++++++ |..||.....   .+....+.    ...    ....+..+.+++..|
T Consensus       179 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~  257 (296)
T 3uzp_A          179 ARYASINTHLGIEQSRRDDLESLGYVLMYFNL-GSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFC  257 (296)
T ss_dssp             TTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHH-SSCTTSSCCCSSSSSHHHHHHHHHHHSCHHHHTTTSCHHHHHHHHHH
T ss_pred             cccCChhhhcCCCCCcchhhHHHHHHHHHHHh-CCCCCCCcCchhhhhhhhhhcccccCCchHHHHhhCCHHHHHHHHHH
Confidence            46999999988888999999999999999999 9999975321   11222221    111    123455677888999


Q ss_pred             HhhCcccCCChhhhhhc
Q psy8478          71 NRLTENKAPSAVSKKRI   87 (88)
Q Consensus        71 l~~~~~~rp~~~~~~~~   87 (88)
                      +..+|.+||++.++.+.
T Consensus       258 l~~dp~~Rps~~~l~~~  274 (296)
T 3uzp_A          258 RSLRFDDKPDYSYLRQL  274 (296)
T ss_dssp             HTSCTTCCCCHHHHHHH
T ss_pred             HhcCcCcCCCHHHHHHH
Confidence            99999999999998753

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=99.59  E-value=4.3e-15  Score=78.09  Aligned_cols=84  Identities=19%  Similarity=0.427  Sum_probs=64.6

Q ss_pred             CcccCcchhccCCC-CchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC---CCCCCChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLF-SSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRL---NRPANCSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~l~~~~~~   77 (88)
                      +.|++||.+.+..+ +.++|+|++|++++++++ |..||......+....+..+...   ..+..+.+++..|+..+|.+
T Consensus       174 ~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~  252 (276)
T 2h6d_A          174 PNYAAPEVISGRLYAGPEVDIWSCGVILYALLC-GTLPFDDEHVPTLFKKIRGGVFYIPEYLNRSVATLLMHMLQVDPLK  252 (276)
T ss_dssp             ---CCTGGGTTSCCCHHHHHHHHHHHHHHHHHH-SSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSSGGG
T ss_pred             ccccCHHHHcCCCCCCccchHHHHHHHHHHHHh-CCCCCCCCcHHHHHHHhhcCcccCchhcCHHHHHHHHHHccCChhh
Confidence            46899999887655 578999999999999999 99999887777777777654321   12344567888899999999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||++.++.+
T Consensus       253 Rps~~~~l~  261 (276)
T 2h6d_A          253 RATIKDIRE  261 (276)
T ss_dssp             SCCHHHHHH
T ss_pred             CCCHHHHHh
Confidence            999999865

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=99.59  E-value=5.2e-15  Score=78.29  Aligned_cols=83  Identities=18%  Similarity=0.311  Sum_probs=65.9

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC------CCCCCChHHHHHHHhhCc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRL------NRPANCSHLIRSRNRLTE   75 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------~~~~~~~~~~~~~l~~~~   75 (88)
                      +.|++||.+. ..++.++|+|++|++++++++ |..||.+....+....+......      +.+..+.+++.+|+..+|
T Consensus       190 ~~y~aPE~~~-~~~~~~~Di~slG~il~~ll~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP  267 (285)
T 3is5_A          190 ALYMAPEVFK-RDVTFKCDIWSAGVVMYFLLT-GCLPFTGTSLEEVQQKATYKEPNYAVECRPLTPQAVDLLKQMLTKDP  267 (285)
T ss_dssp             GGGCCHHHHT-TCCCHHHHHHHHHHHHHHHHH-SSCSSCCSSHHHHHHHHHHCCCCCCC--CCCCHHHHHHHHHHTCSCT
T ss_pred             cCcCChHHhc-cCCCcccCeehHHHHHHHHHh-CCCCCCCCCHHHHHhhhccCCcccccccCcCCHHHHHHHHHHccCCh
Confidence            4689999875 457889999999999999999 99999888877766665433221      123456678899999999


Q ss_pred             ccCCChhhhhh
Q psy8478          76 NKAPSAVSKKR   86 (88)
Q Consensus        76 ~~rp~~~~~~~   86 (88)
                      .+||++.++++
T Consensus       268 ~~Rps~~e~l~  278 (285)
T 3is5_A          268 ERRPSAAQVLH  278 (285)
T ss_dssp             TTSCCHHHHHT
T ss_pred             hhCcCHHHHhc
Confidence            99999999865

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=99.59  E-value=6.5e-15  Score=79.86  Aligned_cols=85  Identities=34%  Similarity=0.684  Sum_probs=65.7

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCC-HHHHHHHHHcCCCCCCCC----CChHHHHHHHhhCcc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPART-NVDVLHYVRGGGRLNRPA----NCSHLIRSRNRLTEN   76 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~----~~~~~~~~~l~~~~~   76 (88)
                      +.|++||.+....++.++|+|++|++++++++.|..||.+.. .......+..+.....+.    .+.+++..|+..+|.
T Consensus       259 ~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~  338 (359)
T 3vhe_A          259 LKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPS  338 (359)
T ss_dssp             GGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGG
T ss_pred             ceeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccchhHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHccCChh
Confidence            469999999888899999999999999999865888987655 344444555554444444    355677788889999


Q ss_pred             cCCChhhhhh
Q psy8478          77 KAPSAVSKKR   86 (88)
Q Consensus        77 ~rp~~~~~~~   86 (88)
                      +||++.++.+
T Consensus       339 ~Rps~~ell~  348 (359)
T 3vhe_A          339 QRPTFSELVE  348 (359)
T ss_dssp             GSCCHHHHHH
T ss_pred             hCCCHHHHHH
Confidence            9999999865

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=99.59  E-value=2.7e-15  Score=81.97  Aligned_cols=84  Identities=18%  Similarity=0.373  Sum_probs=64.8

Q ss_pred             CcccCcchhcc-CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcC--CC----------------------
Q psy8478           2 TRWMAPECLVD-GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGG--GR----------------------   56 (88)
Q Consensus         2 ~~~~~pe~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~----------------------   56 (88)
                      ..|++||.+.+ ..++.++|+|++|++++++++ |..||.+.+..+....+...  .+                      
T Consensus       193 ~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~-g~~pf~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~  271 (367)
T 2fst_X          193 RWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLT-GRTLFPGTDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQ  271 (367)
T ss_dssp             CTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHH-SSCSCCCSSHHHHHHHHHHHHCSCCHHHHTTCCCHHHHHHHHTSCC
T ss_pred             cCccChHHHcCCcCCCchhhHHHHHHHHHHHHh-CCCCCCCCCHHHHHHHHHHHhCCCCHHHHHHhhhHHHHHHHhccCC
Confidence            46899999876 578889999999999999999 99999888776665554321  00                      


Q ss_pred             ----------CCCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          57 ----------LNRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        57 ----------~~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                                ...+..+.+++.+||..+|.+|||+.++++
T Consensus       272 ~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~t~~e~L~  311 (367)
T 2fst_X          272 MPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALA  311 (367)
T ss_dssp             CCCCCHHHHTTTCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             CCCCCHHHHCCCCCHHHHHHHHHhCCCCcccCcCHHHHhc
Confidence                      011233567889999999999999999864

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=99.59  E-value=5.5e-15  Score=80.05  Aligned_cols=84  Identities=19%  Similarity=0.274  Sum_probs=64.2

Q ss_pred             CcccCcchhccC-CCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcC--CCC---------------------
Q psy8478           2 TRWMAPECLVDG-LFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGG--GRL---------------------   57 (88)
Q Consensus         2 ~~~~~pe~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~---------------------   57 (88)
                      +.|++||.+.+. .++.++|+|++|++++++++ |..||.+....+....+...  ...                     
T Consensus       176 ~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (346)
T 1ua2_A          176 RWYRAPELLFGARMYGVGVDMWAVGCILAELLL-RVPFLPGDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPG  254 (346)
T ss_dssp             CTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHH-SSCSSCCSSHHHHHHHHHHHHCCCCTTTSSSTTSSTTCCCCCCCCC
T ss_pred             ccccCchHhhCCCCCCchhhhHhHHHHHHHHHH-CCCCCCCCCHHHHHHHHHHHcCCCChhhhhhhccCcccccccccCC
Confidence            468999998754 57889999999999999999 99999888776666655321  100                     


Q ss_pred             --------CCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          58 --------NRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        58 --------~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                              ..+..+.+++..|+..+|.+|||+.++++
T Consensus       255 ~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  291 (346)
T 1ua2_A          255 IPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALK  291 (346)
T ss_dssp             CCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred             CChHHhhccCCHHHHHHHHHHhccChhhCCCHHHHhc
Confidence                    01123456888999999999999999875

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=99.59  E-value=6.1e-15  Score=78.44  Aligned_cols=84  Identities=18%  Similarity=0.256  Sum_probs=66.2

Q ss_pred             CcccCcchhccCC--CCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC---CCCCCChHHHHHHHhhCcc
Q psy8478           2 TRWMAPECLVDGL--FSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRL---NRPANCSHLIRSRNRLTEN   76 (88)
Q Consensus         2 ~~~~~pe~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~l~~~~~   76 (88)
                      +.|++||.+.+..  ++.++|+|++|++++++++ |..||.+....+....+..+...   ..+..+.+++.+|+..+|.
T Consensus       175 ~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~-g~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~li~~~l~~dp~  253 (305)
T 2wtk_C          175 PAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITT-GLYPFEGDNIYKLFENIGKGSYAIPGDCGPPLSDLLKGMLEYEPA  253 (305)
T ss_dssp             GGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHH-SSCSCCCSSHHHHHHHHHHCCCCCCSSSCHHHHHHHHHHTCSSTT
T ss_pred             CCCcChhhccCcccCCcchhhHHHHHHHHHHHHh-CCCCCCCchHHHHHHHHhcCCCCCCCccCHHHHHHHHHHccCChh
Confidence            4689999987543  3678999999999999999 99999988877777777654321   1233456788889999999


Q ss_pred             cCCChhhhhh
Q psy8478          77 KAPSAVSKKR   86 (88)
Q Consensus        77 ~rp~~~~~~~   86 (88)
                      +||++.++.+
T Consensus       254 ~Rps~~~ll~  263 (305)
T 2wtk_C          254 KRFSIRQIRQ  263 (305)
T ss_dssp             TSCCHHHHHH
T ss_pred             hCCCHHHHhc
Confidence            9999999865

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=99.59  E-value=3e-15  Score=81.79  Aligned_cols=84  Identities=18%  Similarity=0.368  Sum_probs=65.2

Q ss_pred             CcccCcchhcc-CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHc--CCC----------------------
Q psy8478           2 TRWMAPECLVD-GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRG--GGR----------------------   56 (88)
Q Consensus         2 ~~~~~pe~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~----------------------   56 (88)
                      +.|++||.+.+ ..++.++|+|++|++++++++ |..||.+....+....+..  +..                      
T Consensus       205 ~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~-g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (371)
T 4exu_A          205 RWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLT-GKTLFKGKDYLDQLTQILKVTGVPGTEFVQKLNDKAAKSYIQSLPQ  283 (371)
T ss_dssp             CTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHH-SSCSCCCSSHHHHHHHHHHHHCCCCHHHHTTCSCHHHHHHHHHSCC
T ss_pred             ccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHh-CCCCCCCCChHHHHHHHHHHhCCCcHHHHHHhhhhhhhhhhhccCC
Confidence            56899999876 578889999999999999999 9999988776665554422  000                      


Q ss_pred             ----------CCCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          57 ----------LNRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        57 ----------~~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                                ...+..+.+++.+||..+|.+||++.++++
T Consensus       284 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  323 (371)
T 4exu_A          284 TPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALT  323 (371)
T ss_dssp             CCCCCHHHHSTTSCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred             CcchhHHHhccccChHHHHHHHHHCCCChhhcCCHHHHhc
Confidence                      112345667889999999999999999865

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=99.59  E-value=3.7e-15  Score=80.25  Aligned_cols=84  Identities=25%  Similarity=0.403  Sum_probs=63.7

Q ss_pred             CcccCcchhccC-CCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHc--C------------------CC----
Q psy8478           2 TRWMAPECLVDG-LFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRG--G------------------GR----   56 (88)
Q Consensus         2 ~~~~~pe~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~------------------~~----   56 (88)
                      +.|++||.+.+. .++.++|+|++|++++++++ |..||.+....+....+..  +                  ..    
T Consensus       188 ~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (331)
T 4aaa_A          188 RWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFM-GEPLFPGDSDIDQLYHIMMCLGNLIPRHQELFNKNPVFAGVRLPEI  266 (331)
T ss_dssp             CTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHH-SSCSCCCSSHHHHHHHHHHHHCSCCHHHHHHHHHCGGGTTCCCCCC
T ss_pred             ccccCcccccCCCCcchHHHHHHHHHHHHHHHh-CCCCCCCCCcHHHHHHHHHHhCCCChhhhhHhhhccccccccCccc
Confidence            468999998765 67889999999999999999 9999988776555443321  0                  00    


Q ss_pred             ----------CCCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          57 ----------LNRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        57 ----------~~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                                +..+..+.+++..|+..+|.+||++.++++
T Consensus       267 ~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~  306 (331)
T 4aaa_A          267 KEREPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCAELLH  306 (331)
T ss_dssp             SSCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred             cccchhhhcccchhHHHHHHHHHHhccCcccCCCHHHHhc
Confidence                      012334567888999999999999999875

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=99.58  E-value=3.1e-15  Score=79.08  Aligned_cols=84  Identities=32%  Similarity=0.618  Sum_probs=67.2

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcC-CCCCCC----CCChHHHHHHHhhCccc
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGG-GRLNRP----ANCSHLIRSRNRLTENK   77 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~----~~~~~~~~~~l~~~~~~   77 (88)
                      .|++||.+....++.+.|+|++|++++++++.|..||.+....+....+... ...+.+    ..+.+++..|+..+|.+
T Consensus       189 ~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~  268 (291)
T 1u46_A          189 AWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDKEGERLPRPEDCPQDIYNVMVQCWAHKPED  268 (291)
T ss_dssp             GGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTSCCCCCCCTTCCHHHHHHHHHHTCSSGGG
T ss_pred             eeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccCCHHHHHHHHHccCCCCCCCcCcCHHHHHHHHHHccCCccc
Confidence            5999999987778889999999999999987688999888877777776543 233333    34556777888899999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||++.++.+
T Consensus       269 Rps~~~l~~  277 (291)
T 1u46_A          269 RPTFVALRD  277 (291)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHHH
Confidence            999999865

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=99.58  E-value=7.8e-15  Score=77.94  Aligned_cols=84  Identities=20%  Similarity=0.372  Sum_probs=65.2

Q ss_pred             CcccCcchhc-----cCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCC------CCCCChHHHHHH
Q psy8478           2 TRWMAPECLV-----DGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLN------RPANCSHLIRSR   70 (88)
Q Consensus         2 ~~~~~pe~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~   70 (88)
                      +.|++||.+.     ...++.++|+|++|++++++++ |..||......+....+.....+.      .+..+.+++..|
T Consensus       181 ~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~  259 (302)
T 2j7t_A          181 PYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQ-IEPPHHELNPMRVLLKIAKSDPPTLLTPSKWSVEFRDFLKIA  259 (302)
T ss_dssp             GGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHH-SSCTTTTSCHHHHHHHHHHSCCCCCSSGGGSCHHHHHHHHHH
T ss_pred             hhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhc-CCCCCccCCHHHHHHHHhccCCcccCCccccCHHHHHHHHHH
Confidence            4689999884     4567889999999999999999 999998877776666665443221      123356778889


Q ss_pred             HhhCcccCCChhhhhh
Q psy8478          71 NRLTENKAPSAVSKKR   86 (88)
Q Consensus        71 l~~~~~~rp~~~~~~~   86 (88)
                      +..+|.+||++.++.+
T Consensus       260 l~~dp~~Rps~~~ll~  275 (302)
T 2j7t_A          260 LDKNPETRPSAAQLLE  275 (302)
T ss_dssp             SCSCTTTSCCHHHHTT
T ss_pred             cccChhhCCCHHHHhc
Confidence            9999999999999865

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=99.58  E-value=1.1e-16  Score=86.59  Aligned_cols=83  Identities=19%  Similarity=0.368  Sum_probs=60.9

Q ss_pred             CcccCcchhccCCC-CchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCC----CCCChHHHHHHHhhCcc
Q psy8478           2 TRWMAPECLVDGLF-SSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNR----PANCSHLIRSRNRLTEN   76 (88)
Q Consensus         2 ~~~~~pe~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~l~~~~~   76 (88)
                      +.|++||.+.+..+ +.++|+|++|++++++++ |..||...........+..+ ....    +..+.+++.+|+..+|.
T Consensus       171 ~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~-g~~Pf~~~~~~~~~~~i~~~-~~~~p~~~s~~~~~li~~~L~~dP~  248 (336)
T 3h4j_B          171 PNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLV-GRLPFDDEFIPNLFKKVNSC-VYVMPDFLSPGAQSLIRRMIVADPM  248 (336)
T ss_dssp             TTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHH-SSCSSBCSSSTTCBCCCCSS-CCCCCTTSCHHHHHHHHTTSCSSGG
T ss_pred             cCcCCHHHHcCCCCCCCccchhHHHHHHHHHHh-CCCCCCCccHHHHHHHHHcC-CCCCcccCCHHHHHHHHHHcCCChh
Confidence            57999999987765 678999999999999999 99999765433322222222 1222    33455677788888999


Q ss_pred             cCCChhhhhh
Q psy8478          77 KAPSAVSKKR   86 (88)
Q Consensus        77 ~rp~~~~~~~   86 (88)
                      +|||++++.+
T Consensus       249 ~Rpt~~eil~  258 (336)
T 3h4j_B          249 QRITIQEIRR  258 (336)
T ss_dssp             GSCCHHHHTT
T ss_pred             HCcCHHHHHh
Confidence            9999999865

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=99.58  E-value=5.9e-16  Score=81.93  Aligned_cols=85  Identities=12%  Similarity=0.146  Sum_probs=63.4

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHH---HHHHHHH----cCC----CCCCCCCChHHHHHH
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNV---DVLHYVR----GGG----RLNRPANCSHLIRSR   70 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~----~~~----~~~~~~~~~~~~~~~   70 (88)
                      +.|++||.+.+..++.++|+|++|++++++++ |..||.+....   +....+.    ...    ....+..+.+++..|
T Consensus       179 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~  257 (296)
T 4hgt_A          179 ARYASINTHLGIEQSRRDDLESLGYVLMYFNL-GSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFC  257 (296)
T ss_dssp             GGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHH-SSCTTSSCCCSSSSSHHHHHHHHHHHSCHHHHTTTSCHHHHHHHHHH
T ss_pred             ccccchHHhcCCCCCchhHHHHHHHHHHHHhc-CCCCCcccchhhhhhhhhhhhcccccchhhhhhccCCHHHHHHHHHH
Confidence            56899999988888999999999999999999 99999753321   1111111    111    122356677888999


Q ss_pred             HhhCcccCCChhhhhhc
Q psy8478          71 NRLTENKAPSAVSKKRI   87 (88)
Q Consensus        71 l~~~~~~rp~~~~~~~~   87 (88)
                      +..+|.+||++.++.+.
T Consensus       258 l~~~p~~Rpt~~~l~~~  274 (296)
T 4hgt_A          258 RSLRFDDKPDYSYLRQL  274 (296)
T ss_dssp             HTSCTTCCCCHHHHHHH
T ss_pred             HhcCCCCCCCHHHHHHH
Confidence            99999999999998763

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=99.58  E-value=5.6e-15  Score=80.60  Aligned_cols=84  Identities=23%  Similarity=0.426  Sum_probs=66.5

Q ss_pred             CcccCcchhcc------CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC-------CCCCCChHHHH
Q psy8478           2 TRWMAPECLVD------GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRL-------NRPANCSHLIR   68 (88)
Q Consensus         2 ~~~~~pe~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-------~~~~~~~~~~~   68 (88)
                      +.|++||.+.+      ..++.++|+|++|++++++++ |..||...........+..+...       ..+..+.+++.
T Consensus       263 ~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~-g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~  341 (365)
T 2y7j_A          263 PGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLA-GSPPFWHRRQILMLRMIMEGQYQFSSPEWDDRSSTVKDLIS  341 (365)
T ss_dssp             GGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHH-SSCSSCCSSHHHHHHHHHHTCCCCCHHHHSSSCHHHHHHHH
T ss_pred             CCccChhhccccccccCcCCCchhhHHhHHHHHHHHHH-CCCCCCCCCHHHHHHHHHhCCCCCCCcccccCCHHHHHHHH
Confidence            56999998863      247789999999999999999 99999887777777776554321       12334667888


Q ss_pred             HHHhhCcccCCChhhhhh
Q psy8478          69 SRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        69 ~~l~~~~~~rp~~~~~~~   86 (88)
                      .|+..+|.+||++.++.+
T Consensus       342 ~~L~~dP~~Rps~~ell~  359 (365)
T 2y7j_A          342 RLLQVDPEARLTAEQALQ  359 (365)
T ss_dssp             HHSCSSTTTSCCHHHHHH
T ss_pred             HHcCCChhHCcCHHHHhc
Confidence            999999999999999875

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=99.58  E-value=1.2e-15  Score=82.12  Aligned_cols=83  Identities=17%  Similarity=0.212  Sum_probs=64.0

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCC---HHHHHHHHHcCC---C-----CCCCCCChHHHHHH
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPART---NVDVLHYVRGGG---R-----LNRPANCSHLIRSR   70 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~---~-----~~~~~~~~~~~~~~   70 (88)
                      +.|++||.+.+..++.++|+|++|++++++++ |..||.+..   ..+....+....   .     ...| .+.+++..|
T Consensus       181 ~~y~aPE~~~~~~~~~~~Di~slG~il~ell~-g~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~p-~~~~li~~~  258 (330)
T 2izr_A          181 ARYMSINTHLGKEQSRRDDLEALGHMFMYFLR-GSLPWQGLKADTLKERYQKIGDTKRATPIEVLCENFP-EMATYLRYV  258 (330)
T ss_dssp             TTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHH-SSCTTTTCCCSSHHHHHHHHHHHHHHSCHHHHTTTCH-HHHHHHHHH
T ss_pred             ccccChHHHcCCCCCchhHHHHHHHHHHHHhc-CCCCccccccccHHHHHHHHHhhhccCCHHHHhccCh-HHHHHHHHH
Confidence            57999999988889999999999999999999 999998643   333333332211   0     1133 677888899


Q ss_pred             HhhCcccCCChhhhhh
Q psy8478          71 NRLTENKAPSAVSKKR   86 (88)
Q Consensus        71 l~~~~~~rp~~~~~~~   86 (88)
                      +..+|.+||++.++.+
T Consensus       259 l~~~p~~RP~~~~l~~  274 (330)
T 2izr_A          259 RRLDFFEKPDYDYLRK  274 (330)
T ss_dssp             HHCCTTCCCCHHHHHH
T ss_pred             HhCCCCCCCCHHHHHH
Confidence            9999999999999875

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=99.58  E-value=6.4e-15  Score=77.92  Aligned_cols=83  Identities=25%  Similarity=0.484  Sum_probs=66.2

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCC-CC------CCCCChHHHHHHHhhC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGR-LN------RPANCSHLIRSRNRLT   74 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~------~~~~~~~~~~~~l~~~   74 (88)
                      +.|++||.+.+ .++.++|+|++|++++++++ |..||.+....+....+..+.. ..      .+..+.+++.+|+..+
T Consensus       187 ~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~d  264 (287)
T 2wei_A          187 AYYIAPEVLRG-TYDEKCDVWSAGVILYILLS-GTPPFYGKNEYDILKRVETGKYAFDLPQWRTISDDAKDLIRKMLTFH  264 (287)
T ss_dssp             HTTCCHHHHTT-CCCTHHHHHHHHHHHHHHHH-SSCSSCCSSHHHHHHHHHHCCCCCCSGGGTTSCHHHHHHHHHHTCSS
T ss_pred             ccccChHHhcC-CCCCchhhHhHHHHHHHHHh-CCCCCCCCCHHHHHHHHHcCCCCCCchhhhhcCHHHHHHHHHHcccC
Confidence            35899998865 47889999999999999999 9999988888777777765532 11      2334567888899999


Q ss_pred             cccCCChhhhhh
Q psy8478          75 ENKAPSAVSKKR   86 (88)
Q Consensus        75 ~~~rp~~~~~~~   86 (88)
                      |.+||++.++.+
T Consensus       265 p~~Rps~~ell~  276 (287)
T 2wei_A          265 PSLRITATQCLE  276 (287)
T ss_dssp             GGGSCCHHHHHH
T ss_pred             hhhCcCHHHHhc
Confidence            999999999865

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=99.58  E-value=4.5e-15  Score=78.60  Aligned_cols=84  Identities=33%  Similarity=0.553  Sum_probs=62.2

Q ss_pred             CcccCcchhc---cCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCH-HHHHHHHHcCCCC--------CCCCCChHHHHH
Q psy8478           2 TRWMAPECLV---DGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTN-VDVLHYVRGGGRL--------NRPANCSHLIRS   69 (88)
Q Consensus         2 ~~~~~pe~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~--------~~~~~~~~~~~~   69 (88)
                      +.|++||.+.   ...++.++|+|++|++++++++ |..||..... ......+..+...        ..+..+.+++.+
T Consensus       186 ~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~  264 (289)
T 3og7_A          186 ILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMT-GQLPYSNINNRDQIIEMVGRGSLSPDLSKVRSNCPKRMKRLMAE  264 (289)
T ss_dssp             CTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHH-SSCTTSSCCCHHHHHHHHHHTSCCCCTTSSCTTSCHHHHHHHHH
T ss_pred             ccccCchhhcccCCCCCCcccchHHHHHHHHHHHH-CCCCccccchHHHHHHHhcccccCcchhhccccCCHHHHHHHHH
Confidence            5689999986   4567789999999999999999 9999976544 3344444433221        122345668888


Q ss_pred             HHhhCcccCCChhhhhh
Q psy8478          70 RNRLTENKAPSAVSKKR   86 (88)
Q Consensus        70 ~l~~~~~~rp~~~~~~~   86 (88)
                      |+..+|.+||++.++.+
T Consensus       265 ~l~~~p~~Rps~~ell~  281 (289)
T 3og7_A          265 CLKKKRDERPSFPRILA  281 (289)
T ss_dssp             HTCSSGGGSCCHHHHHH
T ss_pred             HccCChhhCCCHHHHHH
Confidence            99999999999999865

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=99.58  E-value=3.8e-15  Score=79.97  Aligned_cols=84  Identities=15%  Similarity=0.257  Sum_probs=49.8

Q ss_pred             CcccCcchh---ccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC-CCCCCCCChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECL---VDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG-RLNRPANCSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~l~~~~~~   77 (88)
                      +.|++||.+   ....++.++|+|++|++++++++ |..||......+......... ....+..+.+++..|+..+|.+
T Consensus       214 ~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~  292 (337)
T 3ll6_A          214 PMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCF-RQHPFEDGAKLRIVNGKYSIPPHDTQYTVFHSLIRAMLQVNPEE  292 (337)
T ss_dssp             ----------CCTTSCSSHHHHHHHHHHHHHHHHH-SSCCC------------CCCCTTCCSSGGGHHHHHHHSCSSGGG
T ss_pred             CCcCChhhhhccccCCCChHHhHHHHHHHHHHHHh-CCCCCcchhHHHhhcCcccCCcccccchHHHHHHHHHccCChhh
Confidence            458999988   34567889999999999999999 999997654443332221111 1123445778999999999999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||++.++.+
T Consensus       293 Rps~~e~l~  301 (337)
T 3ll6_A          293 RLSIAEVVH  301 (337)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHHH
Confidence            999999865

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=99.58  E-value=5e-15  Score=81.65  Aligned_cols=84  Identities=19%  Similarity=0.337  Sum_probs=60.8

Q ss_pred             CcccCcchhccC-CCCchhhHHHHHHHHHHHHhcCCCCCCCCCH---------HHHHHHHHc--CCCC------------
Q psy8478           2 TRWMAPECLVDG-LFSSQSDVWAFGVLLWEIMSLGQQPYPARTN---------VDVLHYVRG--GGRL------------   57 (88)
Q Consensus         2 ~~~~~pe~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~i~~--~~~~------------   57 (88)
                      +.|+|||.+.+. .++.++|+|++|++++++++ |..||.+...         .+.+..+..  +.+.            
T Consensus       199 ~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~-g~~pf~~~~~~~~~~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~  277 (405)
T 3rgf_A          199 FWYRAPELLLGARHYTKAIDIWAIGCIFAELLT-SEPIFHCRQEDIKTSNPYHHDQLDRIFNVMGFPADKDWEDIKKMPE  277 (405)
T ss_dssp             CTTCCHHHHTTCCSCCHHHHHHHHHHHHHHHHH-SSCTTCCCC------CCCCHHHHHHHHHHHCCCCTTTCGGGGGSTT
T ss_pred             CcccCchhhcCCCcccchhhhHHHHHHHHHHHh-CCCCCCCccccccccccchHHHHHHHHHhhCCCChhhcchhhcCcc
Confidence            469999998874 58889999999999999999 9999965432         122222211  1100            


Q ss_pred             ---------------------------CCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          58 ---------------------------NRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        58 ---------------------------~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                                                 ..+..+.+++..||..+|.+|||++++++
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~L~~dP~~R~ta~e~L~  333 (405)
T 3rgf_A          278 HSTLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLLTMDPIKRITSEQAMQ  333 (405)
T ss_dssp             HHHHHHHCCGGGGTTCCHHHHHHTTTCCTTSHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             hhhhhhhccccCCCcchhhhhHhhcCCCCCHHHHHHHHHHccCCcccCCCHHHHhc
Confidence                                       11334567899999999999999999875

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=99.58  E-value=7e-15  Score=80.88  Aligned_cols=84  Identities=20%  Similarity=0.417  Sum_probs=61.9

Q ss_pred             CcccCcchhcc-----------CCCCchhhHHHHHHHHHHHHhcCCCCCCCC-CHHHHHHHHHcC-CCCCCC----CCCh
Q psy8478           2 TRWMAPECLVD-----------GLFSSQSDVWAFGVLLWEIMSLGQQPYPAR-TNVDVLHYVRGG-GRLNRP----ANCS   64 (88)
Q Consensus         2 ~~~~~pe~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~-~~~~~~----~~~~   64 (88)
                      +.|++||.+..           ..++.++|+|++|++++++++ |..||... ........+... .....+    ..+.
T Consensus       220 ~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (390)
T 2zmd_A          220 VNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTY-GKTPFQQIINQISKLHAIIDPNHEIEFPDIPEKDLQ  298 (390)
T ss_dssp             GGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHH-SSCTTTTCCCHHHHHHHHHCTTSCCCCCCCSCHHHH
T ss_pred             CCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHH-CCCcchhhhHHHHHHHHHhCccccCCCCccchHHHH
Confidence            57999999864           357889999999999999999 99999764 333444444433 222233    2456


Q ss_pred             HHHHHHHhhCcccCCChhhhhh
Q psy8478          65 HLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        65 ~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                      +++..|+..+|.+||++.++++
T Consensus       299 ~li~~~L~~dP~~Rps~~ell~  320 (390)
T 2zmd_A          299 DVLKCCLKRDPKQRISIPELLA  320 (390)
T ss_dssp             HHHHHHTCSSTTTSCCHHHHHT
T ss_pred             HHHHHHcccChhhCCCHHHHhh
Confidence            7888899999999999999864

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=99.58  E-value=7.5e-15  Score=79.68  Aligned_cols=78  Identities=22%  Similarity=0.439  Sum_probs=59.5

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCC---------CHHHHHHHHHcCCCCCCC----CCChHHHH
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPAR---------TNVDVLHYVRGGGRLNRP----ANCSHLIR   68 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~i~~~~~~~~~----~~~~~~~~   68 (88)
                      +.|++||.+.+..++.++|+|++|++++++++ |..||...         ........+... ....|    ..+.+++.
T Consensus       174 ~~y~aPE~~~~~~~~~~~DiwslG~il~ell~-g~~pf~~~~~~~~~~~~~~~~~~~~i~~~-~~~~p~~~s~~~~~li~  251 (345)
T 3a8x_A          174 PNYIAPEILRGEDYGFSVDWWALGVLMFEMMA-GRSPFDIVGSSDNPDQNTEDYLFQVILEK-QIRIPRSLSVKAASVLK  251 (345)
T ss_dssp             GGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHH-SSCTTTTTTC-------CHHHHHHHHHHC-CCCCCTTSCHHHHHHHH
T ss_pred             ccccCccccCCCCCChHHhHHHHHHHHHHHHh-CCCCcCCcccccccccccHHHHHHHHHcC-CCCCCCCCCHHHHHHHH
Confidence            57999999988889999999999999999999 99999642         223344445443 22333    34567888


Q ss_pred             HHHhhCcccCCCh
Q psy8478          69 SRNRLTENKAPSA   81 (88)
Q Consensus        69 ~~l~~~~~~rp~~   81 (88)
                      +||..+|.+||++
T Consensus       252 ~lL~~dP~~R~~~  264 (345)
T 3a8x_A          252 SFLNKDPKERLGC  264 (345)
T ss_dssp             HHTCSSTTTSTTC
T ss_pred             HHhcCCHhHCCCC
Confidence            8999999999996

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=99.58  E-value=2.4e-15  Score=81.21  Aligned_cols=85  Identities=34%  Similarity=0.753  Sum_probs=64.8

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCH-HHHHHHHHcCCCCCCCC----CChHHHHHHHhhCcc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTN-VDVLHYVRGGGRLNRPA----NCSHLIRSRNRLTEN   76 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~----~~~~~~~~~l~~~~~   76 (88)
                      +.|++||.+....++.++|+|++|++++++++.|..||.+... ......+..+.....+.    .+.+++..|+..+|.
T Consensus       238 ~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~  317 (344)
T 1rjb_A          238 VKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPVDANFYKLIQNGFKMDQPFYATEEIYIIMQSCWAFDSR  317 (344)
T ss_dssp             GGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGG
T ss_pred             cCccCHHHhccCCCChhHhHHHHHHHHHHHHcCCCCCcccCCcHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcCCCch
Confidence            4699999998888899999999999999998658889876653 33344444444443343    455677788889999


Q ss_pred             cCCChhhhhh
Q psy8478          77 KAPSAVSKKR   86 (88)
Q Consensus        77 ~rp~~~~~~~   86 (88)
                      +||++.++.+
T Consensus       318 ~Rps~~~l~~  327 (344)
T 1rjb_A          318 KRPSFPNLTS  327 (344)
T ss_dssp             GSCCHHHHHH
T ss_pred             hCcCHHHHHH
Confidence            9999999865

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=99.58  E-value=1.6e-14  Score=77.15  Aligned_cols=85  Identities=34%  Similarity=0.684  Sum_probs=65.2

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCC-HHHHHHHHHcCCCCCCCC----CChHHHHHHHhhCcc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPART-NVDVLHYVRGGGRLNRPA----NCSHLIRSRNRLTEN   76 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~----~~~~~~~~~l~~~~~   76 (88)
                      +.|++||.+....++.++|+|++|++++++++.|..||.+.. .......+..+.....+.    .+.+++..|+..+|.
T Consensus       214 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~  293 (316)
T 2xir_A          214 LKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPS  293 (316)
T ss_dssp             GGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCCSHHHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGG
T ss_pred             eeecCchhhccccccchhHHHHHHHHHHHHHhCCCCCCcccchhHHHHHHhccCccCCCCCCCCHHHHHHHHHHcCCChh
Confidence            469999999888889999999999999999865888887654 344445555554444333    455677788888999


Q ss_pred             cCCChhhhhh
Q psy8478          77 KAPSAVSKKR   86 (88)
Q Consensus        77 ~rp~~~~~~~   86 (88)
                      +||++.++.+
T Consensus       294 ~Rps~~ell~  303 (316)
T 2xir_A          294 QRPTFSELVE  303 (316)
T ss_dssp             GSCCHHHHHH
T ss_pred             hCcCHHHHHH
Confidence            9999999875

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=99.57  E-value=3.4e-15  Score=80.20  Aligned_cols=85  Identities=22%  Similarity=0.167  Sum_probs=59.1

Q ss_pred             CcccCcchhccC-----CCCchhhHHHHHHHHHHHHhcCCCCCCCCC----------------HHHHHHHHHcCC-CCCC
Q psy8478           2 TRWMAPECLVDG-----LFSSQSDVWAFGVLLWEIMSLGQQPYPART----------------NVDVLHYVRGGG-RLNR   59 (88)
Q Consensus         2 ~~~~~pe~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~i~~~~-~~~~   59 (88)
                      +.|++||.+.+.     .++.++|+|++|++++++++ |..||.+..                .......+.... .+..
T Consensus       197 ~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~t-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (322)
T 3soc_A          197 RRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELAS-RCTAADGPVDEYMLPFEEEIGQHPSLEDMQEVVVHKKKRPVL  275 (322)
T ss_dssp             GGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHT-TBTTSSSCCCCCCCTTHHHHCSSCCHHHHHHHHTTSCCCCCC
T ss_pred             ccccCHhhcccccccCcCCCccchhHHHHHHHHHHHh-CCCCCCCCcchhccchhhhhccCCchhhhhhhhhcccCCCCc
Confidence            579999998763     34557899999999999999 988886431                222233332222 2222


Q ss_pred             CC---------CChHHHHHHHhhCcccCCChhhhhhc
Q psy8478          60 PA---------NCSHLIRSRNRLTENKAPSAVSKKRI   87 (88)
Q Consensus        60 ~~---------~~~~~~~~~l~~~~~~rp~~~~~~~~   87 (88)
                      +.         .+.+++..|+..+|.+|||+.++.+.
T Consensus       276 ~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~  312 (322)
T 3soc_A          276 RDYWQKHAGMAMLCETIEECWDHDAEARLSAGCVGER  312 (322)
T ss_dssp             CGGGGSSHHHHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             cccccccchHHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence            22         15678899999999999999998753

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=99.57  E-value=9.3e-15  Score=78.06  Aligned_cols=84  Identities=24%  Similarity=0.356  Sum_probs=62.8

Q ss_pred             CcccCcchhc-----cCCCCchhhHHHHHHHHHHHHhcCCCCCCCC-CHHHHHHHHHcCCCCC------CCCCChHHHHH
Q psy8478           2 TRWMAPECLV-----DGLFSSQSDVWAFGVLLWEIMSLGQQPYPAR-TNVDVLHYVRGGGRLN------RPANCSHLIRS   69 (88)
Q Consensus         2 ~~~~~pe~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~------~~~~~~~~~~~   69 (88)
                      +.|++||.+.     ...++.++|+|++|++++++++ |..||... ...+....+..+....      .+..+.+++..
T Consensus       188 ~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~  266 (318)
T 2dyl_A          188 AAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELAT-GQFPYKNCKTDFEVLTKVLQEEPPLLPGHMGFSGDFQSFVKD  266 (318)
T ss_dssp             CTTCCHHHHC--------CCTHHHHHHHHHHHHHHHH-SSCTTTTCCSHHHHHHHHHHSCCCCCCSSSCCCHHHHHHHHH
T ss_pred             ccccChhhcccccccccCCccccchhhHHHHHHHHHh-CCCCCCCCCccHHHHHHHhccCCCCCCccCCCCHHHHHHHHH
Confidence            5689999985     3457789999999999999999 99999763 4455555555443332      23446678888


Q ss_pred             HHhhCcccCCChhhhhh
Q psy8478          70 RNRLTENKAPSAVSKKR   86 (88)
Q Consensus        70 ~l~~~~~~rp~~~~~~~   86 (88)
                      |+..+|.+||+++++.+
T Consensus       267 ~l~~dp~~Rps~~~ll~  283 (318)
T 2dyl_A          267 CLTKDHRKRPKYNKLLE  283 (318)
T ss_dssp             HTCSCTTTSCCHHHHTT
T ss_pred             HccCChhHCcCHHHHhh
Confidence            99999999999999865

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=99.57  E-value=3.5e-15  Score=79.59  Aligned_cols=84  Identities=23%  Similarity=0.402  Sum_probs=63.4

Q ss_pred             CcccCcchhcc-CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcC--------------------CCC---
Q psy8478           2 TRWMAPECLVD-GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGG--------------------GRL---   57 (88)
Q Consensus         2 ~~~~~pe~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--------------------~~~---   57 (88)
                      +.|++||.+.+ ..++.++|+|++|++++++++ |..||.+....+....+...                    ...   
T Consensus       166 ~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (311)
T 4agu_A          166 RWYRSPELLVGDTQYGPPVDVWAIGCVFAELLS-GVPLWPGKSDVDQLYLIRKTLGDLIPRHQQVFSTNQYFSGVKIPDP  244 (311)
T ss_dssp             GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHH-SSCSCCCSSHHHHHHHHHHHHCSCCHHHHHHHHTCGGGTTCCCCCC
T ss_pred             ccccChHHHhcCCCCCcchhhHHHHHHHHHHHh-CCCCCCCCCHHHHHHHHHHHhcccccccccccccccccccCcCCCc
Confidence            45899999876 467889999999999999999 99999887766555443211                    000   


Q ss_pred             -----------CCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          58 -----------NRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        58 -----------~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                                 ..+..+.+++..|+..+|.+|||++++.+
T Consensus       245 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  284 (311)
T 4agu_A          245 EDMEPLELKFPNISYPALGLLKGCLHMDPTERLTCEQLLH  284 (311)
T ss_dssp             SSCCCHHHHCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHT
T ss_pred             cccchhhhhcccccHHHHHHHHHHccCChhhcCCHHHHhc
Confidence                       11223456888999999999999999864

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=99.57  E-value=1.2e-15  Score=82.63  Aligned_cols=85  Identities=15%  Similarity=0.209  Sum_probs=63.1

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCC--CCHHHHHHH---HHcCCCC---------CCCCCChHHH
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPA--RTNVDVLHY---VRGGGRL---------NRPANCSHLI   67 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---i~~~~~~---------~~~~~~~~~~   67 (88)
                      +.|++||.+.+..++.++|+|++|++++++++ |..||..  .........   .....+.         ..+..+.+++
T Consensus       224 ~~y~aPE~~~~~~~~~~~Di~slG~il~ell~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li  302 (345)
T 2v62_A          224 IEFTSLDAHKGVALSRRSDVEILGYCMLRWLC-GKLPWEQNLKDPVAVQTAKTNLLDELPQSVLKWAPSGSSCCEIAQFL  302 (345)
T ss_dssp             TTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHH-SSCTTGGGTTCHHHHHHHHHHHHHTTTHHHHHHSCTTSCCHHHHHHH
T ss_pred             ccccCHHHhcCCCCCchhhHHHHHHHHHHHHh-CCCCccccccccHHHHHHHHhhcccccHHHHhhccccccHHHHHHHH
Confidence            57999999988888999999999999999999 9999954  222222111   1111111         3455677888


Q ss_pred             HHHHhhCcccCCChhhhhhc
Q psy8478          68 RSRNRLTENKAPSAVSKKRI   87 (88)
Q Consensus        68 ~~~l~~~~~~rp~~~~~~~~   87 (88)
                      ..|+..+|.+||+++++.+.
T Consensus       303 ~~~l~~dp~~Rps~~~l~~~  322 (345)
T 2v62_A          303 VCAHSLAYDEKPNYQALKKI  322 (345)
T ss_dssp             HHHHTCCTTCCCCHHHHHHH
T ss_pred             HHHhhcCcccCCCHHHHHHH
Confidence            89999999999999998763

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=99.57  E-value=5.2e-15  Score=78.19  Aligned_cols=85  Identities=21%  Similarity=0.459  Sum_probs=62.1

Q ss_pred             CcccCcchhc--cCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCH--HHHHHHHH-cCCCCCCCCC----ChHHHHHHHh
Q psy8478           2 TRWMAPECLV--DGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTN--VDVLHYVR-GGGRLNRPAN----CSHLIRSRNR   72 (88)
Q Consensus         2 ~~~~~pe~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~-~~~~~~~~~~----~~~~~~~~l~   72 (88)
                      +.|++||.+.  ...++.++|+|++|++++++++ |..||.....  ......+. .+..+..+..    +.+++..|+.
T Consensus       190 ~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~  268 (287)
T 4f0f_A          190 FQWMAPETIGAEEESYTEKADTYSFAMILYTILT-GEGPFDEYSYGKIKFINMIREEGLRPTIPEDCPPRLRNVIELCWS  268 (287)
T ss_dssp             CTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHH-SSCTTTTCCCCHHHHHHHHHHSCCCCCCCTTSCHHHHHHHHHHTC
T ss_pred             ccccCchhhccCCCCcCchhhHHHHHHHHHHHHc-CCCCCccccccHHHHHHHHhccCCCCCCCcccCHHHHHHHHHHhc
Confidence            5689999984  3456789999999999999999 9999975543  22233333 3333334444    5567778888


Q ss_pred             hCcccCCChhhhhhc
Q psy8478          73 LTENKAPSAVSKKRI   87 (88)
Q Consensus        73 ~~~~~rp~~~~~~~~   87 (88)
                      .+|.+||+++++.+.
T Consensus       269 ~dp~~Rps~~~ll~~  283 (287)
T 4f0f_A          269 GDPKKRPHFSYIVKE  283 (287)
T ss_dssp             SSGGGSCCHHHHHHH
T ss_pred             CChhhCcCHHHHHHH
Confidence            999999999998753

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=99.57  E-value=8e-15  Score=80.92  Aligned_cols=79  Identities=22%  Similarity=0.431  Sum_probs=60.1

Q ss_pred             CCcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCC---------CHHHHHHHHHcCCCCCCC----CCChHHH
Q psy8478           1 MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPAR---------TNVDVLHYVRGGGRLNRP----ANCSHLI   67 (88)
Q Consensus         1 ~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~i~~~~~~~~~----~~~~~~~   67 (88)
                      ++.|+|||.+.+..++.++|+|++|++++++++ |..||...         ........+... ....|    ..+.+++
T Consensus       216 t~~Y~aPE~l~~~~~~~~~DiwslGvllyell~-G~~Pf~~~~~~~~~~~~~~~~~~~~i~~~-~~~~p~~~s~~~~~li  293 (396)
T 4dc2_A          216 TPNYIAPEILRGEDYGFSVDWWALGVLMFEMMA-GRSPFDIVGSSDNPDQNTEDYLFQVILEK-QIRIPRSLSVKAASVL  293 (396)
T ss_dssp             CGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHH-SSCSSTTTTC------CCHHHHHHHHHHC-CCCCCTTSCHHHHHHH
T ss_pred             CcccCCchhhcCCCCChHHHHHHHHHHHHHHHh-CCCCCcccccccccchhhHHHHHHHHhcc-ccCCCCcCCHHHHHHH
Confidence            357999999998889999999999999999999 99999632         122234444433 22333    3456788


Q ss_pred             HHHHhhCcccCCCh
Q psy8478          68 RSRNRLTENKAPSA   81 (88)
Q Consensus        68 ~~~l~~~~~~rp~~   81 (88)
                      .+||..+|.+||++
T Consensus       294 ~~lL~~dP~~R~~~  307 (396)
T 4dc2_A          294 KSFLNKDPKERLGC  307 (396)
T ss_dssp             HHHTCSCTTTSTTC
T ss_pred             HHHhcCCHhHcCCC
Confidence            88999999999996

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=99.57  E-value=1.7e-14  Score=76.38  Aligned_cols=83  Identities=20%  Similarity=0.332  Sum_probs=63.1

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCC-HHHHHHHHHcCCCC-----CCCCCChHHHHHHHhhCc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPART-NVDVLHYVRGGGRL-----NRPANCSHLIRSRNRLTE   75 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~-----~~~~~~~~~~~~~l~~~~   75 (88)
                      +.|++||.+. ..++.++|+|++|++++++++ |..||.... .......+..+..+     ..+..+.+++.+|+..+|
T Consensus       194 ~~y~aPE~~~-~~~~~~~Di~slG~~l~~l~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp  271 (290)
T 1t4h_A          194 PEFMAPEMYE-EKYDESVDVYAFGMCMLEMAT-SEYPYSECQNAAQIYRRVTSGVKPASFDKVAIPEVKEIIEGCIRQNK  271 (290)
T ss_dssp             CCCCCGGGGG-TCCCTHHHHHHHHHHHHHHHH-SSCTTTTCSSHHHHHHHHTTTCCCGGGGGCCCHHHHHHHHHHSCSSG
T ss_pred             cCcCCHHHHh-ccCCCcchHHHHHHHHHHHHh-CCCCCCCcCcHHHHHHHHhccCCccccCCCCCHHHHHHHHHHccCCh
Confidence            5789999876 458889999999999999999 999997644 44444445444322     122346678889999999


Q ss_pred             ccCCChhhhhh
Q psy8478          76 NKAPSAVSKKR   86 (88)
Q Consensus        76 ~~rp~~~~~~~   86 (88)
                      .+||++.++.+
T Consensus       272 ~~Rps~~ell~  282 (290)
T 1t4h_A          272 DERYSIKDLLN  282 (290)
T ss_dssp             GGSCCHHHHHT
T ss_pred             hhCCCHHHHhh
Confidence            99999999875

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=99.57  E-value=2.9e-14  Score=77.47  Aligned_cols=84  Identities=19%  Similarity=0.307  Sum_probs=63.1

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHH---------------------------------
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVL---------------------------------   48 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------   48 (88)
                      +.|++||.+.+..++.++|+|++|++++++++ |..||......+..                                 
T Consensus       194 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (360)
T 3eqc_A          194 RSYMSPERLQGTHYSVQSDIWSMGLSLVEMAV-GRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLNKFGMDSR  272 (360)
T ss_dssp             CTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHH-TSCCSSCCCHHHHHHHHC-----------------------------
T ss_pred             CCeECHHHHcCCCCCchhhHHHHHHHHHHHHh-CCCCCCCCCHHHHHHHhcccccccCCCCCCCcccCCCcccccccCCC
Confidence            57999999988888999999999999999999 99999765543322                                 


Q ss_pred             ---------HHHHcCCCCCC-----CCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          49 ---------HYVRGGGRLNR-----PANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        49 ---------~~i~~~~~~~~-----~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                               ..+........     +..+.+++..|+..+|.+|||++++++
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  324 (360)
T 3eqc_A          273 PPMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERADLKQLMV  324 (360)
T ss_dssp             -CCCHHHHHHHHHHSCCCCCCTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred             CcccchhhhhHHhccCCCCCCcccccHHHHHHHHHHhhcChhhCCCHHHHhh
Confidence                     22222222211     224567888999999999999999864

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=99.57  E-value=1.1e-14  Score=77.20  Aligned_cols=83  Identities=30%  Similarity=0.561  Sum_probs=61.3

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCH----------------HHHHHHHHcCCCCCCCCCC---
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTN----------------VDVLHYVRGGGRLNRPANC---   63 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~i~~~~~~~~~~~~---   63 (88)
                      .|++||.+....++.++|+|++|++++++++ |..|+.....                ......+..+.+.+.+..+   
T Consensus       182 ~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (295)
T 3ugc_A          182 FWYAPESLTESKFSVASDVWSFGVVLYELFT-YIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRLPRPDGCPDE  260 (295)
T ss_dssp             GGCCHHHHHHCCCCHHHHHHHHHHHHHHHHH-TTCTTCSHHHHHHHHHCTTCCTHHHHHHHHHHHHTTCCCCCCTTCCHH
T ss_pred             ceeCcHHhcCCCCChHHHHHHHHHHHHHHHh-cccccCCChHHHHhhhcCccccchhHHHHHHHHhccCcCCCCcCcCHH
Confidence            4899999988889999999999999999999 8777653211                1223334444444445444   


Q ss_pred             -hHHHHHHHhhCcccCCChhhhhh
Q psy8478          64 -SHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        64 -~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                       .+++..|+..+|.+||++.++.+
T Consensus       261 l~~li~~~l~~dp~~Rps~~el~~  284 (295)
T 3ugc_A          261 IYMIMTECWNNNVNQRPSFRDLAL  284 (295)
T ss_dssp             HHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             HHHHHHHHcCCChhhCCCHHHHHH
Confidence             45677788888999999999865

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=99.57  E-value=1e-14  Score=79.07  Aligned_cols=84  Identities=18%  Similarity=0.358  Sum_probs=63.8

Q ss_pred             CcccCcchhcc-CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcC--------------------------
Q psy8478           2 TRWMAPECLVD-GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGG--------------------------   54 (88)
Q Consensus         2 ~~~~~pe~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--------------------------   54 (88)
                      +.|++||.+.. ..++.++|+|++|++++++++ |..||.+.+..+....+...                          
T Consensus       187 ~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~-g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (353)
T 3coi_A          187 RWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLT-GKTLFKGKDYLDQLTQILKVTGVPGTEFVQKLNDKAAKSYIQSLPQ  265 (353)
T ss_dssp             BCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHH-SSCSSBSSCHHHHHHHHHHHHCBCCHHHHTTCSCHHHHHHHHTSCB
T ss_pred             cCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHh-CCCCCCCCCHHHHHHHHHHHhCCCCHHHHHHHhhHHHHHHHHhCcC
Confidence            46899999876 567889999999999999999 99999887765554443210                          


Q ss_pred             -CC-------CCCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          55 -GR-------LNRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        55 -~~-------~~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                       ..       ...+..+.+++.+|+..+|.+||++.++++
T Consensus       266 ~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~  305 (353)
T 3coi_A          266 TPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALT  305 (353)
T ss_dssp             CSSCCTTTTCTTSCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred             CCCccHHHhcCCcCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence             00       012334567888999999999999999864

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=99.57  E-value=1.3e-14  Score=77.09  Aligned_cols=83  Identities=17%  Similarity=0.313  Sum_probs=64.4

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC--------CCCCCChHHHHHHHhh
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRL--------NRPANCSHLIRSRNRL   73 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------~~~~~~~~~~~~~l~~   73 (88)
                      +.|++||.+.+..++.++|+|++|++++++++ |..||.+....+..........+        ..|..+.+++..++..
T Consensus       176 ~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~  254 (294)
T 4eqm_A          176 VQYFSPEQAKGEATDECTDIYSIGIVLYEMLV-GEPPFNGETAVSIAIKHIQDSVPNVTTDVRKDIPQSLSNVILRATEK  254 (294)
T ss_dssp             CSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHH-SSCSSCSSCHHHHHHHHHSSCCCCHHHHSCTTSCHHHHHHHHHHSCS
T ss_pred             ccccCHhHhcCCCCCchHhHHHHHHHHHHHHh-CCCCCCCCChHHHHHHHhhccCCCcchhcccCCCHHHHHHHHHHhcC
Confidence            57999999988888889999999999999999 99999887766554444333221        2345566788889999


Q ss_pred             CcccCC-Chhhhh
Q psy8478          74 TENKAP-SAVSKK   85 (88)
Q Consensus        74 ~~~~rp-~~~~~~   85 (88)
                      +|.+|| +++++.
T Consensus       255 dp~~R~~~~~~l~  267 (294)
T 4eqm_A          255 DKANRYKTIQEMK  267 (294)
T ss_dssp             SGGGSCSSHHHHH
T ss_pred             CHhHccccHHHHH
Confidence            999999 566654

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=99.56  E-value=5.4e-16  Score=85.76  Aligned_cols=83  Identities=14%  Similarity=0.230  Sum_probs=63.9

Q ss_pred             CcccCcchh----------ccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCChHHHHHHH
Q psy8478           2 TRWMAPECL----------VDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPANCSHLIRSRN   71 (88)
Q Consensus         2 ~~~~~pe~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l   71 (88)
                      +.|++||.+          ....++.++|+|++|++++++++ |..||......+....+... ....|..+.+++..|+
T Consensus       271 ~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGvil~ellt-g~~Pf~~~~~~~~~~~~~~~-~~~~~~~~~~li~~~l  348 (413)
T 3dzo_A          271 RGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWIWC-ADLPNTDDAALGGSEWIFRS-CKNIPQPVRALLEGFL  348 (413)
T ss_dssp             TTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHHHHHHHHH-SSCCCCTTGGGSCSGGGGSS-CCCCCHHHHHHHHHHT
T ss_pred             CceeCchhhhccccccccccCcCCCchhhHHHHHHHHHHHHH-CCCCCCCcchhhhHHHHHhh-cccCCHHHHHHHHHHc
Confidence            469999998          44457789999999999999999 99999866544333333322 2345667888999999


Q ss_pred             hhCcccCCChhhhhh
Q psy8478          72 RLTENKAPSAVSKKR   86 (88)
Q Consensus        72 ~~~~~~rp~~~~~~~   86 (88)
                      ..+|.+||++.++.+
T Consensus       349 ~~dP~~Rpt~~~~l~  363 (413)
T 3dzo_A          349 RYPKEDRLLPLQAME  363 (413)
T ss_dssp             CSSGGGSCCHHHHTT
T ss_pred             cCChhhCcCHHHHHh
Confidence            999999999988754

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=99.56  E-value=4e-15  Score=79.44  Aligned_cols=84  Identities=11%  Similarity=0.254  Sum_probs=64.0

Q ss_pred             CcccCcchhcc-CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCC------------------------
Q psy8478           2 TRWMAPECLVD-GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGR------------------------   56 (88)
Q Consensus         2 ~~~~~pe~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------------------------   56 (88)
                      ..|++||.+.. ..++.++|+|++|++++++++ |..||.+....+....+.....                        
T Consensus       188 ~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (320)
T 2i6l_A          188 KWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLT-GKTLFAGAHELEQMQLILESIPVVHEEDRQELLSVIPVYIRNDMTE  266 (320)
T ss_dssp             CTTCCHHHHHCTTCCCHHHHHHHHHHHHHHHHH-SSCSSCCSSHHHHHHHHHHHSCCCCHHHHHHHHTTSCHHHHHHTTS
T ss_pred             ccccCcHHhcCcccCCchhhhHhHHHHHHHHHh-CCCCCCCCCHHHHHHHHHHhcCCCchhhhhhhhhcCcccccccccC
Confidence            35899998865 568889999999999999999 9999988776665555432211                        


Q ss_pred             ---------CCCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          57 ---------LNRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        57 ---------~~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                               ...+..+.+++.+|+..+|.+||++.++++
T Consensus       267 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  305 (320)
T 2i6l_A          267 PHKPLTQLLPGISREAVDFLEQILTFSPMDRLTAEEALS  305 (320)
T ss_dssp             CCCCHHHHSTTCCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred             CCCChhHhcchhhHHHHHHHHHHcCCCccccCCHHHHhC
Confidence                     113445667778888889999999999865

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=99.56  E-value=6.9e-15  Score=79.91  Aligned_cols=84  Identities=17%  Similarity=0.220  Sum_probs=64.5

Q ss_pred             CcccCcchhcc-CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcC--CC----------------------
Q psy8478           2 TRWMAPECLVD-GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGG--GR----------------------   56 (88)
Q Consensus         2 ~~~~~pe~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~----------------------   56 (88)
                      +.|++||.+.. ..++.++|+|++|++++++++ |..||.+....+....+...  ..                      
T Consensus       197 ~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (362)
T 3pg1_A          197 RWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFN-RKALFRGSTFYNQLNKIVEVVGTPKIEDVVMFSSPSARDYLRNSLS  275 (362)
T ss_dssp             GGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHH-SSCSCCCSSHHHHHHHHHHHHCCCCHHHHHHTSCHHHHHHTTTCCC
T ss_pred             ceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHh-CCCCCCCCCHHHHHHHHHHHcCCCChHHhhhccchhhhHHHHhhcc
Confidence            45899999876 568889999999999999999 99999887766665554321  00                      


Q ss_pred             -----------CCCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          57 -----------LNRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        57 -----------~~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                                 ...+..+.+++.+||..+|.+|||+.++++
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  316 (362)
T 3pg1_A          276 NVPARAWTAVVPTADPVALDLIAKMLEFNPQRRISTEQALR  316 (362)
T ss_dssp             CCCCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             cCChhhHHhhCCCCCHHHHHHHHHHhcCChhhCCCHHHHHc
Confidence                       011233567889999999999999999865

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=99.56  E-value=3.3e-15  Score=81.01  Aligned_cols=84  Identities=12%  Similarity=0.119  Sum_probs=63.4

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCC--HHHHHHHH---HcCCCC---------CCCCCChHHH
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPART--NVDVLHYV---RGGGRL---------NRPANCSHLI   67 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i---~~~~~~---------~~~~~~~~~~   67 (88)
                      +.|++||.+.+..++.++|+|++|++++++++ |..||....  ........   ......         ..+..+.+++
T Consensus       232 ~~y~aPE~~~~~~~~~~~Di~slG~il~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li  310 (352)
T 2jii_A          232 LEFISMDLHKGCGPSRRSDLQSLGYCMLKWLY-GFLPWTNCLPNTEDIMKQKQKFVDKPGPFVGPCGHWIRPSETLQKYL  310 (352)
T ss_dssp             TTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHH-SCCTTGGGTTCHHHHHHHHHHHHHSCCCEECTTSCEECCCHHHHHHH
T ss_pred             ccccCHHHHccCCCCchhhHHHHHHHHHHHHh-CCCCcccCCcCHHHHHHHHHhccCChhhhhhhccccCCCcHHHHHHH
Confidence            47899999988888999999999999999999 999997643  32222222   111110         1245677888


Q ss_pred             HHHHhhCcccCCChhhhhh
Q psy8478          68 RSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        68 ~~~l~~~~~~rp~~~~~~~   86 (88)
                      ..|+..+|.+||+++++.+
T Consensus       311 ~~~l~~dp~~Rps~~~l~~  329 (352)
T 2jii_A          311 KVVMALTYEEKPPYAMLRN  329 (352)
T ss_dssp             HHHHTCCTTCCCCHHHHHH
T ss_pred             HHHHhCChhhCCCHHHHHH
Confidence            8999999999999999865

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=99.56  E-value=4.2e-15  Score=79.44  Aligned_cols=84  Identities=21%  Similarity=0.443  Sum_probs=62.6

Q ss_pred             CcccCcchhcc-----CCCCchhhHHHHHHHHHHHHhcCCCCCCCCC---------------HHHHHHHHHcCCC-C---
Q psy8478           2 TRWMAPECLVD-----GLFSSQSDVWAFGVLLWEIMSLGQQPYPART---------------NVDVLHYVRGGGR-L---   57 (88)
Q Consensus         2 ~~~~~pe~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~i~~~~~-~---   57 (88)
                      +.|++||.+..     ..++.++|+|++|++++++++ |..||.+..               .......+..+.. .   
T Consensus       185 ~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  263 (316)
T 2ac3_A          185 AEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLS-GYPPFVGRCGSDCGWDRGEACPACQNMLFESIQEGKYEFPDK  263 (316)
T ss_dssp             GGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHH-SSCSCCCCCCSCSCC----CCHHHHHHHHHHHHHCCCCCCHH
T ss_pred             cCccChHHhhcccccccCCCcccccHhHHHHHHHHHH-CCCCCcccccccccccccccchhHHHHHHHHHhccCcccCch
Confidence            46899999864     346788999999999999999 999997643               1233444544421 1   


Q ss_pred             ---CCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          58 ---NRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        58 ---~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                         ..+..+.+++.+|+..+|.+||++.++++
T Consensus       264 ~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~  295 (316)
T 2ac3_A          264 DWAHISCAAKDLISKLLVRDAKQRLSAAQVLQ  295 (316)
T ss_dssp             HHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             hcccCCHHHHHHHHHHhhCChhhCCCHHHHhc
Confidence               12345668888999999999999999875

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=99.56  E-value=3.6e-15  Score=79.52  Aligned_cols=86  Identities=29%  Similarity=0.671  Sum_probs=65.0

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCH-HHHHHHHHcCCCCCC----CCCChHHHHHHHhhCcc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTN-VDVLHYVRGGGRLNR----PANCSHLIRSRNRLTEN   76 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~----~~~~~~~~~~~l~~~~~   76 (88)
                      +.|++||.+....++.++|+|++|++++++++.|..||.+... ......+..+.....    +..+.+++..|+..+|.
T Consensus       211 ~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~  290 (313)
T 1t46_A          211 VKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPAEMYDIMKTCWDADPL  290 (313)
T ss_dssp             GGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSSHHHHHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGG
T ss_pred             ceeeChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCCcccchhHHHHHhccCCCCCCcccCCHHHHHHHHHHcCCCch
Confidence            3599999998888899999999999999998768888876553 333344444433333    33456778889999999


Q ss_pred             cCCChhhhhhc
Q psy8478          77 KAPSAVSKKRI   87 (88)
Q Consensus        77 ~rp~~~~~~~~   87 (88)
                      +||++.++.+.
T Consensus       291 ~Rps~~ell~~  301 (313)
T 1t46_A          291 KRPTFKQIVQL  301 (313)
T ss_dssp             GSCCHHHHHHH
T ss_pred             hCcCHHHHHHH
Confidence            99999998753

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=99.56  E-value=3.4e-15  Score=81.30  Aligned_cols=84  Identities=20%  Similarity=0.403  Sum_probs=63.3

Q ss_pred             CcccCcchhccC-CCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHc--CCC----------------------
Q psy8478           2 TRWMAPECLVDG-LFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRG--GGR----------------------   56 (88)
Q Consensus         2 ~~~~~pe~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~----------------------   56 (88)
                      +.|++||.+... .++.++|+|++|++++++++ |..||.+....+....+..  +.+                      
T Consensus       195 ~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~-g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (364)
T 3qyz_A          195 RWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLS-NRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPH  273 (364)
T ss_dssp             GGGCCHHHHHTBCSCSTHHHHHHHHHHHHHHHH-SSCSSCCSSGGGHHHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSCC
T ss_pred             cCCCCCHHhcCCCCCCcchhHHHHHHHHHHHHH-CCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhhhhhHHHHHHhcCC
Confidence            458999987654 57889999999999999999 9999987765555444421  000                      


Q ss_pred             ----------CCCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          57 ----------LNRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        57 ----------~~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                                ...+..+.+++.+||..+|.+|||+.++++
T Consensus       274 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  313 (364)
T 3qyz_A          274 KNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALA  313 (364)
T ss_dssp             CCCCCHHHHCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             ccCCCHHHhCCCCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence                      112334667899999999999999999865

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=99.56  E-value=1.1e-14  Score=77.74  Aligned_cols=85  Identities=25%  Similarity=0.373  Sum_probs=64.2

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCH------HHHHHHHHcCCCCCCCCCChHHHHHHHhhCc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTN------VDVLHYVRGGGRLNRPANCSHLIRSRNRLTE   75 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~   75 (88)
                      +.|++||.+.+..++.++|+|++|++++++++ |..|+.....      ...........+...+..+.+++..|+..+|
T Consensus       186 ~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP  264 (310)
T 3s95_A          186 PYWMAPEMINGRSYDEKVDVFSFGIVLCEIIG-RVNADPDYLPRTMDFGLNVRGFLDRYCPPNCPPSFFPITVRCCDLDP  264 (310)
T ss_dssp             GGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHH-TCCSSTTTSCBCTTSSBCHHHHHHHTCCTTCCTTHHHHHHHHTCSSG
T ss_pred             cceeCHHHhcCCCCCcHHHHHHHHHHHHHHhc-CCCCCcchhhhHHHHhhhhhccccccCCCCCCHHHHHHHHHHccCCh
Confidence            45999999988888999999999999999998 8777653211      0111122222344567788899999999999


Q ss_pred             ccCCChhhhhhc
Q psy8478          76 NKAPSAVSKKRI   87 (88)
Q Consensus        76 ~~rp~~~~~~~~   87 (88)
                      .+||++.++.+.
T Consensus       265 ~~Rps~~~l~~~  276 (310)
T 3s95_A          265 EKRPSFVKLEHW  276 (310)
T ss_dssp             GGSCCHHHHHHH
T ss_pred             hhCcCHHHHHHH
Confidence            999999998653

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=99.56  E-value=1.3e-14  Score=79.07  Aligned_cols=84  Identities=21%  Similarity=0.389  Sum_probs=61.5

Q ss_pred             CcccCcchhccCCCCch-hhHHHHHHHHHHHHhcCCCCCCCCC----HHHHHHHHHcCC-CCC----CCCCChHHHHHHH
Q psy8478           2 TRWMAPECLVDGLFSSQ-SDVWAFGVLLWEIMSLGQQPYPART----NVDVLHYVRGGG-RLN----RPANCSHLIRSRN   71 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~-~~~----~~~~~~~~~~~~l   71 (88)
                      +.|++||.+.+..+..+ +|+|++|++++++++ |..||.+..    .......+.... ..+    .+..+.+++.+||
T Consensus       181 ~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L  259 (361)
T 3uc3_A          181 PAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLV-GAYPFEDPEEPRDYRKTIQRILSVKYSIPDDIRISPECCHLISRIF  259 (361)
T ss_dssp             CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHH-SSCSCC----CCCHHHHHHHHHTTCCCCCTTSCCCHHHHHHHHHHS
T ss_pred             CCcCChhhhcCCCCCCCeeeeehhHHHHHHHHh-CCCCCCCCccHHHHHHHHHHHhcCCCCCCCcCCCCHHHHHHHHHHc
Confidence            57999999987777655 899999999999999 999997533    234444444332 222    2334567888999


Q ss_pred             hhCcccCCChhhhhh
Q psy8478          72 RLTENKAPSAVSKKR   86 (88)
Q Consensus        72 ~~~~~~rp~~~~~~~   86 (88)
                      ..+|.+|||+.++.+
T Consensus       260 ~~dP~~Rps~~ell~  274 (361)
T 3uc3_A          260 VADPATRISIPEIKT  274 (361)
T ss_dssp             CSCTTTSCCHHHHHT
T ss_pred             cCChhHCcCHHHHHh
Confidence            999999999999864

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=99.56  E-value=2.9e-15  Score=80.56  Aligned_cols=85  Identities=34%  Similarity=0.701  Sum_probs=64.3

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHH-HHHHHHcCCCCCCC----CCChHHHHHHHhhCcc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVD-VLHYVRGGGRLNRP----ANCSHLIRSRNRLTEN   76 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~----~~~~~~~~~~l~~~~~   76 (88)
                      +.|++||.+.+..++.++|+|++|++++++++.|..||.+..... ....+..+.....+    ..+.+++..|+..+|.
T Consensus       230 ~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~  309 (333)
T 2i1m_A          230 VKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILVNSKFYKLVKDGYQMAQPAFAPKNIYSIMQACWALEPT  309 (333)
T ss_dssp             GGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCSSHHHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGG
T ss_pred             ccccCHHHhccCCCChHHHHHHHHHHHHHHHcCCCCCCcccchhHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHhccChh
Confidence            369999999888889999999999999999875788887654333 33334444433333    3455677888999999


Q ss_pred             cCCChhhhhh
Q psy8478          77 KAPSAVSKKR   86 (88)
Q Consensus        77 ~rp~~~~~~~   86 (88)
                      +||++.++.+
T Consensus       310 ~Rps~~~l~~  319 (333)
T 2i1m_A          310 HRPTFQQICS  319 (333)
T ss_dssp             GSCCHHHHHH
T ss_pred             hCcCHHHHHH
Confidence            9999999865

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=99.56  E-value=1.5e-15  Score=79.98  Aligned_cols=84  Identities=20%  Similarity=0.320  Sum_probs=47.8

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC-C--CCCCCCChHHHHHHHhhCcccC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG-R--LNRPANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~--~~~~~~~~~~~~~~l~~~~~~r   78 (88)
                      +.|++||.+....++.++|+|++|++++++++ |..||......+....+.... .  ...+..+.+++.+|+..+|.+|
T Consensus       176 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~R  254 (278)
T 3cok_A          176 PNYISPEIATRSAHGLESDVWSLGCMFYTLLI-GRPPFDTDTVKNTLNKVVLADYEMPSFLSIEAKDLIHQLLRRNPADR  254 (278)
T ss_dssp             ----------------CTHHHHHHHHHHHHHH-SSCSSCCCSCC-----CCSSCCCCCTTSCHHHHHHHHHHSCSSGGGS
T ss_pred             CCcCCcchhcCCCCCchhhHHHHHHHHHHHHh-CCCCCCChhHHHHHHHHhhcccCCccccCHHHHHHHHHHcccCHhhC
Confidence            46899999887778889999999999999999 999997655444443332211 1  1123345678888999999999


Q ss_pred             CChhhhhh
Q psy8478          79 PSAVSKKR   86 (88)
Q Consensus        79 p~~~~~~~   86 (88)
                      |++.++.+
T Consensus       255 ps~~~~l~  262 (278)
T 3cok_A          255 LSLSSVLD  262 (278)
T ss_dssp             CCHHHHTT
T ss_pred             CCHHHHhc
Confidence            99999875

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=99.55  E-value=1.7e-14  Score=78.07  Aligned_cols=84  Identities=20%  Similarity=0.421  Sum_probs=60.8

Q ss_pred             CcccCcchhcc-----------CCCCchhhHHHHHHHHHHHHhcCCCCCCCCC-HHHHHHHHHc-CCCCCCCC----CCh
Q psy8478           2 TRWMAPECLVD-----------GLFSSQSDVWAFGVLLWEIMSLGQQPYPART-NVDVLHYVRG-GGRLNRPA----NCS   64 (88)
Q Consensus         2 ~~~~~pe~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~-~~~~~~~~----~~~   64 (88)
                      +.|++||.+..           ..++.++|+|++|++++++++ |..||.... .......+.. ......+.    .+.
T Consensus       173 ~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  251 (343)
T 3dbq_A          173 VNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTY-GKTPFQQIINQISKLHAIIDPNHEIEFPDIPEKDLQ  251 (343)
T ss_dssp             CSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHH-SSCTTTTCCSHHHHHHHHHCTTSCCCCCCCSCHHHH
T ss_pred             cCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHh-CCCcchhhhhHHHHHHHHhcCCcccCCcccCCHHHH
Confidence            57999999864           567789999999999999999 999997543 3333333332 22223333    456


Q ss_pred             HHHHHHHhhCcccCCChhhhhh
Q psy8478          65 HLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        65 ~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                      +++..|+..+|.+||++.++++
T Consensus       252 ~li~~~L~~dp~~Rpt~~e~l~  273 (343)
T 3dbq_A          252 DVLKCCLKRDPKQRISIPELLA  273 (343)
T ss_dssp             HHHHHHTCSSTTTSCCHHHHHT
T ss_pred             HHHHHHcCCChhHCCCHHHHHh
Confidence            7888899999999999999864

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=99.55  E-value=2e-15  Score=82.59  Aligned_cols=41  Identities=15%  Similarity=0.505  Sum_probs=36.6

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPART   43 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   43 (88)
                      +.|++||.+.+..++.++|+|++|++++++++ |..||....
T Consensus       257 ~~y~aPE~~~~~~~~~~~DiwslG~il~ellt-g~~pf~~~~  297 (397)
T 1wak_A          257 RQYRSLEVLIGSGYNTPADIWSTACMAFELAT-GDYLFEPHS  297 (397)
T ss_dssp             GGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHH-SSCSCCCCC
T ss_pred             CcccCChhhcCCCCCcHHHHHHHHHHHHHHhh-CCCCCCCCc
Confidence            56999999998889999999999999999999 999997543

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=99.55  E-value=1.2e-14  Score=78.59  Aligned_cols=84  Identities=13%  Similarity=0.342  Sum_probs=64.4

Q ss_pred             CcccCcchhccC-CCCc-hhhHHHHHHHHHHHHhcCCCCCCCCCH-HHHHHHHHcCCC-CC-------------------
Q psy8478           2 TRWMAPECLVDG-LFSS-QSDVWAFGVLLWEIMSLGQQPYPARTN-VDVLHYVRGGGR-LN-------------------   58 (88)
Q Consensus         2 ~~~~~pe~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~-~~-------------------   58 (88)
                      ..|++||.+... .+.. ++|+|++|++++++++ |..||..... .+....+..+.. .+                   
T Consensus       214 ~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~-g~~pf~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (348)
T 2pml_X          214 YEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFY-NVVPFSLKISLVELFNNIRTKNIEYPLDRNHFLYPLTNKKSTCSN  292 (348)
T ss_dssp             GGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHH-SSCSSCCSSCSHHHHHHHTSCCCCCCCSSSSSTTTTCC-------
T ss_pred             cCccCchhhcCCCCCCcchhhHHHHHHHHHHHHh-CCCCCCCCCcHHHHHHHHhccCcCCccchhhhhccccccccccch
Confidence            468999998876 5655 8999999999999999 9999987655 666666654421 11                   


Q ss_pred             --CCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          59 --RPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        59 --~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                        .+..+.+++..|+..+|.+||++.++.+
T Consensus       293 ~~~~~~l~~li~~~L~~dP~~Rps~~e~l~  322 (348)
T 2pml_X          293 NFLSNEDIDFLKLFLRKNPAERITSEDALK  322 (348)
T ss_dssp             -CCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred             hhcCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence              2233457888899999999999999865

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=99.55  E-value=1.5e-14  Score=76.70  Aligned_cols=84  Identities=18%  Similarity=0.399  Sum_probs=65.3

Q ss_pred             CcccCcchhc------cCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC-CCC------CCCCChHHHH
Q psy8478           2 TRWMAPECLV------DGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG-RLN------RPANCSHLIR   68 (88)
Q Consensus         2 ~~~~~pe~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~------~~~~~~~~~~   68 (88)
                      +.|++||.+.      ...++.++|+|++|++++++++ |..||...........+..+. ...      .+..+.+++.
T Consensus       187 ~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~  265 (298)
T 1phk_A          187 PSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLA-GSPPFWHRKQMLMLRMIMSGNYQFGSPEWDDYSDTVKDLVS  265 (298)
T ss_dssp             GGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHH-SSCSSCCSSHHHHHHHHHHTCCCCCTTTGGGSCHHHHHHHH
T ss_pred             ccccCHHHhccccccccccCCcccccHhHHHHHHHHHH-CCCCCcCccHHHHHHHHhcCCcccCcccccccCHHHHHHHH
Confidence            4689999875      3357789999999999999999 999998887777776665443 221      2234567888


Q ss_pred             HHHhhCcccCCChhhhhh
Q psy8478          69 SRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        69 ~~l~~~~~~rp~~~~~~~   86 (88)
                      .|+..+|.+||++.++++
T Consensus       266 ~~l~~dp~~Rps~~~ll~  283 (298)
T 1phk_A          266 RFLVVQPQKRYTAEEALA  283 (298)
T ss_dssp             HHCCSSGGGSCCHHHHTT
T ss_pred             HHccCCcccCCCHHHHHh
Confidence            899999999999999875

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=99.55  E-value=4.4e-14  Score=74.66  Aligned_cols=84  Identities=20%  Similarity=0.294  Sum_probs=60.0

Q ss_pred             CcccCcchh----ccCCCCchhhHHHHHHHHHHHHhcCCCCCCCC-CHHHHHHHHHcCCCCC-----CCCCChHHHHHHH
Q psy8478           2 TRWMAPECL----VDGLFSSQSDVWAFGVLLWEIMSLGQQPYPAR-TNVDVLHYVRGGGRLN-----RPANCSHLIRSRN   71 (88)
Q Consensus         2 ~~~~~pe~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~-----~~~~~~~~~~~~l   71 (88)
                      +.|++||.+    ....++.++|+|++|++++++++ |..||... ................     .+..+.+++..|+
T Consensus       173 ~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l  251 (290)
T 3fme_A          173 KPYMAPERINPELNQKGYSVKSDIWSLGITMIELAI-LRFPYDSWGTPFQQLKQVVEEPSPQLPADKFSAEFVDFTSQCL  251 (290)
T ss_dssp             CCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHH-TSCSSCCCSCHHHHHHHHHHSCCCCCCTTTSCHHHHHHHHHHT
T ss_pred             ccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHH-CCCCccccCchHHHHHHHhccCCCCcccccCCHHHHHHHHHHh
Confidence            568999996    34467889999999999999999 99999753 3333333333332222     2234556788899


Q ss_pred             hhCcccCCChhhhhh
Q psy8478          72 RLTENKAPSAVSKKR   86 (88)
Q Consensus        72 ~~~~~~rp~~~~~~~   86 (88)
                      ..+|.+||++.++.+
T Consensus       252 ~~~p~~Rpt~~e~l~  266 (290)
T 3fme_A          252 KKNSKERPTYPELMQ  266 (290)
T ss_dssp             CSSGGGSCCHHHHTT
T ss_pred             hcChhhCcCHHHHHh
Confidence            999999999999865

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=99.55  E-value=1.2e-14  Score=80.59  Aligned_cols=85  Identities=21%  Similarity=0.345  Sum_probs=65.6

Q ss_pred             CCcccCcchhccCC----CCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcC---CCCC----CCCCChHHHHH
Q psy8478           1 MTRWMAPECLVDGL----FSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGG---GRLN----RPANCSHLIRS   69 (88)
Q Consensus         1 ~~~~~~pe~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~~~----~~~~~~~~~~~   69 (88)
                      ++.|+|||.+....    ++.++|+|++|++++++++ |..||.+.+..+....+..+   ...+    .+..+.+++..
T Consensus       232 t~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~-G~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~s~~~~~li~~  310 (410)
T 3v8s_A          232 TPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLV-GDTPFYADSLVGTYSKIMNHKNSLTFPDDNDISKEAKNLICA  310 (410)
T ss_dssp             CGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHH-SSCTTCCSSHHHHHHHHHTHHHHCCCCTTCCCCHHHHHHHHH
T ss_pred             CccccCHHHhhccCCCcCCCCcceEecchHHHHHHHh-CCCCCCCCChhhHHHHHHhccccccCCCcccccHHHHHHHHH
Confidence            35799999997654    7789999999999999999 99999988888887777542   1222    23345667777


Q ss_pred             HHhhCccc--CCChhhhhh
Q psy8478          70 RNRLTENK--APSAVSKKR   86 (88)
Q Consensus        70 ~l~~~~~~--rp~~~~~~~   86 (88)
                      ||...+.+  |++++++.+
T Consensus       311 lL~~~~~rlgR~~~~ei~~  329 (410)
T 3v8s_A          311 FLTDREVRLGRNGVEEIKR  329 (410)
T ss_dssp             HSSCGGGCTTSSCHHHHHT
T ss_pred             HccChhhhCCCCCHHHHhc
Confidence            87767777  899998864

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=99.55  E-value=1.9e-14  Score=76.41  Aligned_cols=84  Identities=24%  Similarity=0.421  Sum_probs=62.8

Q ss_pred             CcccCcchhcc-CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCC-------------CCCCChHHH
Q psy8478           2 TRWMAPECLVD-GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLN-------------RPANCSHLI   67 (88)
Q Consensus         2 ~~~~~pe~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------------~~~~~~~~~   67 (88)
                      +.|++||.+.. ..++.++|+|++|++++++++ |..||...................             .+..+.+++
T Consensus       190 ~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li  268 (303)
T 2vwi_A          190 PCWMAPEVMEQVRGYDFKADIWSFGITAIELAT-GAAPYHKYPPMKVLMLTLQNDPPSLETGVQDKEMLKKYGKSFRKMI  268 (303)
T ss_dssp             CTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHH-SSCTTTTSCGGGHHHHHHTSSCCCTTC-----CCCCCCCHHHHHHH
T ss_pred             ccccCHHHhccccCCCchhhHHHHHHHHHHHHh-CCCCCccCchhhHHHHHhccCCCccccccccchhhhhhhHHHHHHH
Confidence            45899998865 467889999999999999999 999998766554444443332211             122345678


Q ss_pred             HHHHhhCcccCCChhhhhh
Q psy8478          68 RSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        68 ~~~l~~~~~~rp~~~~~~~   86 (88)
                      ..|+..+|.+||++.++.+
T Consensus       269 ~~~l~~dp~~Rps~~~ll~  287 (303)
T 2vwi_A          269 SLCLQKDPEKRPTAAELLR  287 (303)
T ss_dssp             HHHCCSSGGGSCCHHHHHT
T ss_pred             HHHccCChhhCcCHHHHhh
Confidence            8899999999999999875

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=99.55  E-value=1.9e-14  Score=77.87  Aligned_cols=84  Identities=21%  Similarity=0.323  Sum_probs=62.6

Q ss_pred             CcccCcchhcc-CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHc--CCC----------------------
Q psy8478           2 TRWMAPECLVD-GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRG--GGR----------------------   56 (88)
Q Consensus         2 ~~~~~pe~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~----------------------   56 (88)
                      +.|++||.+.. ..++.++|+|++|++++++++ |..||.+....+....+..  +..                      
T Consensus       186 ~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (353)
T 2b9h_A          186 RWYRAPEVMLTSAKYSRAMDVWSCGCILAELFL-RRPIFPGRDYRHQLLLIFGIIGTPHSDNDLRCIESPRAREYIKSLP  264 (353)
T ss_dssp             GGGCCHHHHHSCCCCCHHHHHHHHHHHHHHHHH-SSCSCCCSSHHHHHHHHHHHHCCCCSTTTTTTCCCHHHHHHHHTSC
T ss_pred             ccccCCeeeccCCCccchhhHHHHHHHHHHHHh-CCCCCCCCCcHHHHHHHHHHhCCCchhccccccccchhhHHhhccc
Confidence            35899998765 568889999999999999999 9999987776554443321  100                      


Q ss_pred             -----------CCCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          57 -----------LNRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        57 -----------~~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                                 ...+..+.+++..|+..+|.+||++.++++
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  305 (353)
T 2b9h_A          265 MYPAAPLEKMFPRVNPKGIDLLQRMLVFDPAKRITAKEALE  305 (353)
T ss_dssp             CCCCCCHHHHSTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             CCCCcchhhhcccCCHHHHHHHHHhcCcCcccCCCHHHHhc
Confidence                       112334457888999999999999999865

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=99.55  E-value=2.3e-14  Score=76.48  Aligned_cols=85  Identities=18%  Similarity=0.313  Sum_probs=63.6

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCC--CHHHHHHHHHcCCCCC-----CCCCChHHHHHHHhhC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPAR--TNVDVLHYVRGGGRLN-----RPANCSHLIRSRNRLT   74 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~-----~~~~~~~~~~~~l~~~   74 (88)
                      +.|++||.+....++.++|+|++|++++++++ |..||.+.  ...+....+..+..+.     .+..+.+++..|+..+
T Consensus       200 ~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~d  278 (310)
T 2wqm_A          200 PYYMSPERIHENGYNFKSDIWSLGCLLYEMAA-LQSPFYGDKMNLYSLCKKIEQCDYPPLPSDHYSEELRQLVNMCINPD  278 (310)
T ss_dssp             CSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHH-SSCTTC---CCHHHHHHHHHTTCSCCCCTTTSCHHHHHHHHHHTCSS
T ss_pred             eeEeChHHhCCCCCCchhhHHHHHHHHHHHHh-CCCCCcccchhHHHHHHHhhcccCCCCcccccCHHHHHHHHHHcCCC
Confidence            46899999988888999999999999999999 88888653  3344455555443222     2334567778889999


Q ss_pred             cccCCChhhhhhc
Q psy8478          75 ENKAPSAVSKKRI   87 (88)
Q Consensus        75 ~~~rp~~~~~~~~   87 (88)
                      |.+||++.++.+.
T Consensus       279 p~~Rps~~~il~~  291 (310)
T 2wqm_A          279 PEKRPDVTYVYDV  291 (310)
T ss_dssp             GGGSCCHHHHHHH
T ss_pred             hhhCCCHHHHHHH
Confidence            9999999998653

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=99.54  E-value=3.3e-15  Score=81.35  Aligned_cols=85  Identities=12%  Similarity=0.154  Sum_probs=62.9

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCC-HHHHHHHHH------------cCC-CCCCCCCChHHH
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPART-NVDVLHYVR------------GGG-RLNRPANCSHLI   67 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~------------~~~-~~~~~~~~~~~~   67 (88)
                      +.|++||.+.+..++.++|+|++|++++++++ |..||.+.. .........            ... ....|..+.+++
T Consensus       225 ~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li  303 (364)
T 3op5_A          225 IEFTSIDAHNGVAPSRRGDLEILGYCMIQWLT-GHLPWEDNLKDPKYVRDSKIRYRENIASLMDKCFPAANAPGEIAKYM  303 (364)
T ss_dssp             TTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHH-SCCTTGGGTTCHHHHHHHHHHHHHCHHHHHHHHSCTTCCCHHHHHHH
T ss_pred             CCccCHHHhCCCCCCchhhHHHHHHHHHHHHh-CCCCccccccCHHHHHHHHHHhhhhHHHHHHHhcccccCHHHHHHHH
Confidence            57999999988889999999999999999999 999997432 111111110            000 123456677888


Q ss_pred             HHHHhhCcccCCChhhhhhc
Q psy8478          68 RSRNRLTENKAPSAVSKKRI   87 (88)
Q Consensus        68 ~~~l~~~~~~rp~~~~~~~~   87 (88)
                      ..|+..+|.+||++.++.+.
T Consensus       304 ~~cl~~~p~~RP~~~~l~~~  323 (364)
T 3op5_A          304 ETVKLLDYTEKPLYENLRDI  323 (364)
T ss_dssp             HHHHTCCTTCCCCHHHHHHH
T ss_pred             HHHhcCCCCCCCCHHHHHHH
Confidence            89999999999999998754

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=99.54  E-value=2.3e-14  Score=81.72  Aligned_cols=80  Identities=21%  Similarity=0.304  Sum_probs=62.0

Q ss_pred             CCcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCC----CHHHHHHHHHcCCC---CCCCCCChHHHHHHHhh
Q psy8478           1 MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPAR----TNVDVLHYVRGGGR---LNRPANCSHLIRSRNRL   73 (88)
Q Consensus         1 ~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~---~~~~~~~~~~~~~~l~~   73 (88)
                      ++.|++||.+.+..++.++|+|++|++++++++ |..||.+.    ...++...+.....   ...+..+.+++..||..
T Consensus       352 T~~Y~APE~l~~~~~~~~~DiwSlGvilyellt-G~~PF~~~~~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~lL~~  430 (543)
T 3c4z_A          352 TPGFMAPELLLGEEYDFSVDYFALGVTLYEMIA-ARGPFRARGEKVENKELKQRVLEQAVTYPDKFSPASKDFCEALLQK  430 (543)
T ss_dssp             CTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHH-SSCSSCCTTCCCCHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHSCS
T ss_pred             CccccChhhhcCCCCChHHhcCcchHHHHHHHh-CCCCCCCCccchhHHHHHHHHhhcccCCCcccCHHHHHHHHHhccC
Confidence            357999999998889999999999999999999 99999764    34555556654421   12334566788889999


Q ss_pred             CcccCCCh
Q psy8478          74 TENKAPSA   81 (88)
Q Consensus        74 ~~~~rp~~   81 (88)
                      +|.+||++
T Consensus       431 dP~~R~~~  438 (543)
T 3c4z_A          431 DPEKRLGF  438 (543)
T ss_dssp             SGGGSCCC
T ss_pred             CHhHCCCC
Confidence            99999975

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=99.53  E-value=3.6e-14  Score=79.03  Aligned_cols=84  Identities=23%  Similarity=0.404  Sum_probs=58.9

Q ss_pred             CcccCcchhcc---CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCC-C-CC-----CChHHHHHHH
Q psy8478           2 TRWMAPECLVD---GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLN-R-PA-----NCSHLIRSRN   71 (88)
Q Consensus         2 ~~~~~pe~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~-~~-----~~~~~~~~~l   71 (88)
                      +.|+|||.+..   ..++.++|+|++|++++++++.|..||........ ..+....... . +.     .+.+++.+|+
T Consensus       190 ~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~L  268 (432)
T 3p23_A          190 EGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQRQA-NILLGACSLDCLHPEKHEDVIARELIEKMI  268 (432)
T ss_dssp             TTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBSTTTHHH-HHHTTCCCCTTSCTTCHHHHHHHHHHHHHS
T ss_pred             cCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchhhHHHH-HHHhccCCccccCccccccHHHHHHHHHHH
Confidence            57999999873   45567899999999999999867788865443332 2222221111 1 11     1457888999


Q ss_pred             hhCcccCCChhhhhh
Q psy8478          72 RLTENKAPSAVSKKR   86 (88)
Q Consensus        72 ~~~~~~rp~~~~~~~   86 (88)
                      ..+|.+||++.++.+
T Consensus       269 ~~dP~~Rps~~evl~  283 (432)
T 3p23_A          269 AMDPQKRPSAKHVLK  283 (432)
T ss_dssp             CSSGGGSCCHHHHHT
T ss_pred             hCCHhhCCCHHHHHh
Confidence            999999999999874

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=99.53  E-value=8e-15  Score=78.89  Aligned_cols=84  Identities=18%  Similarity=0.267  Sum_probs=61.1

Q ss_pred             CcccCcchhccCCC-CchhhHHHHHHHHHHHHhcCCCCCCCCCHH-HHHHHHHcCC-CC----CCCCCChHHHHHHHhhC
Q psy8478           2 TRWMAPECLVDGLF-SSQSDVWAFGVLLWEIMSLGQQPYPARTNV-DVLHYVRGGG-RL----NRPANCSHLIRSRNRLT   74 (88)
Q Consensus         2 ~~~~~pe~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~-~~----~~~~~~~~~~~~~l~~~   74 (88)
                      +.|++||.+....+ +.++|+|++|++++++++ |..||...... .......... ..    ..+..+.+++.+||..+
T Consensus       171 ~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~d  249 (323)
T 3tki_A          171 LPYVAPELLKRREFHAEPVDVWSCGIVLTAMLA-GELPWDQPSDSCQEYSDWKEKKTYLNPWKKIDSAPLALLHKILVEN  249 (323)
T ss_dssp             GGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHH-SSCSCSSSCTTSHHHHHHHTTCTTSTTGGGSCHHHHHHHHHHSCSS
T ss_pred             cCccCcHHhccCCCCCCcccHHHHHHHHHHHHh-CCCCCCCCchHHHHHHHHhcccccCCccccCCHHHHHHHHHHccCC
Confidence            46899999987665 668999999999999999 99999765432 2222222221 11    12334567888999999


Q ss_pred             cccCCChhhhhh
Q psy8478          75 ENKAPSAVSKKR   86 (88)
Q Consensus        75 ~~~rp~~~~~~~   86 (88)
                      |.+||++.++.+
T Consensus       250 P~~R~t~~eil~  261 (323)
T 3tki_A          250 PSARITIPDIKK  261 (323)
T ss_dssp             TTTSCCHHHHTT
T ss_pred             hhhCcCHHHHhh
Confidence            999999999865

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=99.53  E-value=2.6e-15  Score=81.68  Aligned_cols=41  Identities=20%  Similarity=0.590  Sum_probs=34.6

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPART   43 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   43 (88)
                      +.|++||.+.+..++.++|+|++|++++++++ |..||....
T Consensus       199 ~~y~aPE~~~~~~~~~~~Di~slG~il~el~~-g~~pf~~~~  239 (373)
T 1q8y_A          199 REYRSPEVLLGAPWGCGADIWSTACLIFELIT-GDFLFEPDE  239 (373)
T ss_dssp             GGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHH-SSCCC----
T ss_pred             ccccCcHHHhCCCCCchHhHHHHHHHHHHHHh-CCCCCCCCc
Confidence            57999999988889999999999999999999 999997543

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=99.52  E-value=2.1e-14  Score=82.32  Aligned_cols=85  Identities=25%  Similarity=0.369  Sum_probs=64.3

Q ss_pred             CCcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCC----HHHHHHHHHcCC---CCCCCCCChHHHHHHHhh
Q psy8478           1 MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPART----NVDVLHYVRGGG---RLNRPANCSHLIRSRNRL   73 (88)
Q Consensus         1 ~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~---~~~~~~~~~~~~~~~l~~   73 (88)
                      ++.|+|||.+.+..++.++|+|++|++++++++ |..||.+..    ..++...+....   ....+..+.+++.+||..
T Consensus       348 T~~Y~APEvl~~~~~~~~~DiwSLGvilyeLlt-G~~PF~~~~~~~~~~~i~~~i~~~~~~~p~~~s~~~~dLI~~lL~~  426 (576)
T 2acx_A          348 TVGYMAPEVVKNERYTFSPDWWALGCLLYEMIA-GQSPFQQRKKKIKREEVERLVKEVPEEYSERFSPQARSLCSQLLCK  426 (576)
T ss_dssp             CGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHH-SSCSSSCSSSCCCHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCS
T ss_pred             CccccCHHHHcCCCCCccchHHHHHHHHHHHHh-CCCCCcccccchhHHHHHHHhhcccccCCccCCHHHHHHHHHhccC
Confidence            357999999988889999999999999999999 999997643    344555554332   112334566788889999


Q ss_pred             CcccCC-----Chhhhhh
Q psy8478          74 TENKAP-----SAVSKKR   86 (88)
Q Consensus        74 ~~~~rp-----~~~~~~~   86 (88)
                      +|.+||     +++++.+
T Consensus       427 dP~~R~g~~~~sa~eil~  444 (576)
T 2acx_A          427 DPAERLGCRGGSAREVKE  444 (576)
T ss_dssp             SGGGSTTCSSSHHHHHHT
T ss_pred             CHHHcCCCCCCCHHHHHh
Confidence            999999     6677653

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=99.52  E-value=3.2e-14  Score=75.50  Aligned_cols=85  Identities=27%  Similarity=0.424  Sum_probs=58.8

Q ss_pred             CcccCcchhccC------CCCchhhHHHHHHHHHHHHhcC----------CCCCCCCC-----HHHHHHHHHc-CCCCCC
Q psy8478           2 TRWMAPECLVDG------LFSSQSDVWAFGVLLWEIMSLG----------QQPYPART-----NVDVLHYVRG-GGRLNR   59 (88)
Q Consensus         2 ~~~~~pe~~~~~------~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~-----~~~~~~~i~~-~~~~~~   59 (88)
                      +.|++||.+...      .++.++|+|++|++++++++ |          ..||....     .......+.. ...+..
T Consensus       181 ~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~t-g~~~~~~~~~~~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (301)
T 3q4u_A          181 KRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVAR-RMVSNGIVEDYKPPFYDVVPNDPSFEDMRKVVCVDQQRPNI  259 (301)
T ss_dssp             GGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHT-TBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCC
T ss_pred             cceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHh-hhcCccccccccccccccCCCCcchhhhhHHHhccCCCCCC
Confidence            579999998765      34468999999999999999 7          77775321     2222222222 222333


Q ss_pred             CC---------CChHHHHHHHhhCcccCCChhhhhhc
Q psy8478          60 PA---------NCSHLIRSRNRLTENKAPSAVSKKRI   87 (88)
Q Consensus        60 ~~---------~~~~~~~~~l~~~~~~rp~~~~~~~~   87 (88)
                      +.         .+.+++..|+..+|.+|||+.++.+.
T Consensus       260 ~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~  296 (301)
T 3q4u_A          260 PNRWFSDPTLTSLAKLMKECWYQNPSARLTALRIKKT  296 (301)
T ss_dssp             CGGGGGSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHH
T ss_pred             ChhhccCccHHHHHHHHHHHhhcChhhCCCHHHHHHH
Confidence            32         25578888999999999999998763

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=99.52  E-value=5.5e-14  Score=78.25  Aligned_cols=84  Identities=25%  Similarity=0.441  Sum_probs=60.2

Q ss_pred             CcccCcchhcc-------CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCC---------CCCChH
Q psy8478           2 TRWMAPECLVD-------GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNR---------PANCSH   65 (88)
Q Consensus         2 ~~~~~pe~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---------~~~~~~   65 (88)
                      +.|+|||.+.+       ..++.++|+|++|++++++++.|..||......+ ...+......+.         +..+.+
T Consensus       196 ~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~  274 (434)
T 2rio_A          196 SGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKYSRE-SNIIRGIFSLDEMKCLHDRSLIAEATD  274 (434)
T ss_dssp             CTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCCTTCSTTTHH-HHHHHTCCCCCCCTTCCCHHHHHHHHH
T ss_pred             CCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhCCCCCCCCchhhH-HHHhcCCCCcccccccccccchHHHHH
Confidence            57999999865       4578899999999999999976788886544332 222222221111         123567


Q ss_pred             HHHHHHhhCcccCCChhhhhh
Q psy8478          66 LIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        66 ~~~~~l~~~~~~rp~~~~~~~   86 (88)
                      ++.+|+..+|.+||++.++.+
T Consensus       275 li~~~L~~dP~~Rps~~eil~  295 (434)
T 2rio_A          275 LISQMIDHDPLKRPTAMKVLR  295 (434)
T ss_dssp             HHHHHTCSSGGGSCCHHHHHT
T ss_pred             HHHHHhhCChhhCCCHHHHHh
Confidence            888999999999999999864

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=99.52  E-value=6.5e-14  Score=74.94  Aligned_cols=80  Identities=16%  Similarity=0.207  Sum_probs=59.2

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC-----CCCCCChHHHHHHHhhCcc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRL-----NRPANCSHLIRSRNRLTEN   76 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~~~~~~~~~l~~~~~   76 (88)
                      +.|++||.+.+ .++.++|+|++|++++++++ |..++...   .....+..+...     ..+..+.+++..|+..+|.
T Consensus       220 ~~y~aPE~~~~-~~~~~~DiwslG~il~el~~-g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~  294 (311)
T 3p1a_A          220 PRYMAPELLQG-SYGTAADVFSLGLTILEVAC-NMELPHGG---EGWQQLRQGYLPPEFTAGLSSELRSVLVMMLEPDPK  294 (311)
T ss_dssp             GGGCCGGGGGT-CCSTHHHHHHHHHHHHHHHH-TCCCCSSH---HHHHHHTTTCCCHHHHTTSCHHHHHHHHHHSCSSTT
T ss_pred             ccccCHhHhcC-CCCchhhHHHHHHHHHHHHh-CCCCCCCc---cHHHHHhccCCCcccccCCCHHHHHHHHHHcCCChh
Confidence            57999998875 68889999999999999999 75554432   223333333211     2345567788899999999


Q ss_pred             cCCChhhhhh
Q psy8478          77 KAPSAVSKKR   86 (88)
Q Consensus        77 ~rp~~~~~~~   86 (88)
                      +||++.++++
T Consensus       295 ~Rpt~~ell~  304 (311)
T 3p1a_A          295 LRATAEALLA  304 (311)
T ss_dssp             TSCCHHHHHT
T ss_pred             hCcCHHHHHh
Confidence            9999999875

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=99.52  E-value=9.9e-15  Score=78.21  Aligned_cols=84  Identities=13%  Similarity=0.239  Sum_probs=60.2

Q ss_pred             CcccCcchhc--------cCCCCchhhHHHHHHHHHHHHhcCCCCCCCCC----HHHHHHHHHcCCCC------------
Q psy8478           2 TRWMAPECLV--------DGLFSSQSDVWAFGVLLWEIMSLGQQPYPART----NVDVLHYVRGGGRL------------   57 (88)
Q Consensus         2 ~~~~~pe~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~------------   57 (88)
                      +.|++||.+.        ...++.++|+|++|++++++++ |..||....    ..+....+..+.+.            
T Consensus       179 ~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  257 (319)
T 4euu_A          179 EEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAAT-GSLPFRPFEGPRRNKEVMYKIITGKPSGAISGVQKAENG  257 (319)
T ss_dssp             GGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHH-SSCSEECTTCGGGCHHHHHHHHHHCCTTCCEEEECSTTC
T ss_pred             CCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHh-CCCCCCCCCccchhHHHHHHHhcCCCcccchhhhcccCC
Confidence            5789999876        3567889999999999999999 999986322    23444444333211            


Q ss_pred             --------CCC--------CCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          58 --------NRP--------ANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        58 --------~~~--------~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                              +.+        ..+.+++..||..+|.+||++.++++
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~~R~s~~ell~  302 (319)
T 4euu_A          258 PIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFA  302 (319)
T ss_dssp             CEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHH
T ss_pred             ccccCccCCcccccchhHHHHhHHHHHHhccCChhhhccHHHhhh
Confidence                    110        12445778999999999999999864

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=99.52  E-value=8.4e-14  Score=76.63  Aligned_cols=83  Identities=20%  Similarity=0.373  Sum_probs=60.1

Q ss_pred             CcccCcchhcc---CCCCchhhHHHHHHHHHHHHhcCCCCCCCC---CHHHHHHHHHcCC---CCCCCCCChHHHHHHHh
Q psy8478           2 TRWMAPECLVD---GLFSSQSDVWAFGVLLWEIMSLGQQPYPAR---TNVDVLHYVRGGG---RLNRPANCSHLIRSRNR   72 (88)
Q Consensus         2 ~~~~~pe~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~---~~~~~~~~~~~~~~~l~   72 (88)
                      +.|+|||.+..   ..++.++|+|++|++++++++ |..||...   ...+....+....   +...+..+.+++..||.
T Consensus       178 ~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~p~~~s~~~~~li~~lL~  256 (384)
T 4fr4_A          178 KPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLR-GRRPYHIRSSTSSKEIVHTFETTVVTYPSAWSQEMVSLLKKLLE  256 (384)
T ss_dssp             GGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHH-SSCSSCCCTTSCHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHSC
T ss_pred             ccccCCeeeccCCCCCCCccceeechHHHHHHHHh-CCCCCCCCCCccHHHHHHHHhhcccCCCCcCCHHHHHHHHHHhc
Confidence            56999999864   357889999999999999999 99999743   3344444443332   11223445678888999


Q ss_pred             hCcccCCC-hhhhh
Q psy8478          73 LTENKAPS-AVSKK   85 (88)
Q Consensus        73 ~~~~~rp~-~~~~~   85 (88)
                      .+|.+||+ ++++.
T Consensus       257 ~dP~~R~s~~~~l~  270 (384)
T 4fr4_A          257 PNPDQRFSQLSDVQ  270 (384)
T ss_dssp             SSGGGSCCSHHHHH
T ss_pred             CCHhHhcccHHHHH
Confidence            99999998 66654

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=99.51  E-value=4.9e-15  Score=80.05  Aligned_cols=84  Identities=19%  Similarity=0.357  Sum_probs=47.5

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHH----HHHHcC-C--CC----CCCCCChHHHHHH
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVL----HYVRGG-G--RL----NRPANCSHLIRSR   70 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~~~-~--~~----~~~~~~~~~~~~~   70 (88)
                      +.|++||.+....++.++|+|++|++++++++ |..||.........    ..+..+ .  ..    ..+..+.+++..|
T Consensus       193 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~  271 (336)
T 3fhr_A          193 PYYVAPEVLGPEKYDKSCDMWSLGVIMYILLC-GFPPFYSNTGQAISPGMKRRIRLGQYGFPNPEWSEVSEDAKQLIRLL  271 (336)
T ss_dssp             -----------CHHHHHHHHHHHHHHHHHHHH-SSCCC---------------------CCCTTTSTTCCHHHHHHHHHH
T ss_pred             cCccChhhhCCCCCCchhhHHHHHHHHHHHHH-CCCCCCCccchhhhhhHHHhhhccccccCchhhccCCHHHHHHHHHH
Confidence            46899999877788889999999999999999 99999755433221    111111 1  11    1234466788889


Q ss_pred             HhhCcccCCChhhhhh
Q psy8478          71 NRLTENKAPSAVSKKR   86 (88)
Q Consensus        71 l~~~~~~rp~~~~~~~   86 (88)
                      +..+|.+||++.++.+
T Consensus       272 L~~dP~~Rpt~~ell~  287 (336)
T 3fhr_A          272 LKTDPTERLTITQFMN  287 (336)
T ss_dssp             SCSSGGGSCCHHHHHH
T ss_pred             CCCChhHCcCHHHHhc
Confidence            9999999999999865

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=99.51  E-value=2.1e-14  Score=77.18  Aligned_cols=83  Identities=31%  Similarity=0.527  Sum_probs=61.8

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCH---------------HHHHHHHHcCCCCCCCC----CC
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTN---------------VDVLHYVRGGGRLNRPA----NC   63 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~i~~~~~~~~~~----~~   63 (88)
                      .|++||.+.+..++.+.|+|++|++++++++ |..|+.....               ......+..+...+.+.    .+
T Consensus       195 ~y~aPE~~~~~~~~~~~Di~slG~il~~ll~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  273 (327)
T 3lxl_A          195 FWYAPESLSDNIFSRQSDVWSFGVVLYELFT-YCDKSCSPSAEFLRMMGCERDVPALSRLLELLEEGQRLPAPPACPAEV  273 (327)
T ss_dssp             GGSCHHHHHHCEEEHHHHHHHHHHHHHHHHT-TTCGGGSHHHHHHHHCC----CCHHHHHHHHHHTTCCCCCCTTCCHHH
T ss_pred             cccCHHHhccCCCChHHhHHHHHHHHHHHHh-CCCCCccccchhhhhcccccccccHHHHHHHhhcccCCCCCCcccHHH
Confidence            4999999988888899999999999999999 8887753222               22333344444444444    35


Q ss_pred             hHHHHHHHhhCcccCCChhhhhh
Q psy8478          64 SHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        64 ~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                      .+++..|+..+|.+||++.++.+
T Consensus       274 ~~li~~~l~~dP~~Rps~~ell~  296 (327)
T 3lxl_A          274 HELMKLCWAPSPQDRPSFSALGP  296 (327)
T ss_dssp             HHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             HHHHHHHcCCChhhCcCHHHHHH
Confidence            56777888899999999999865

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=99.50  E-value=2.9e-14  Score=80.41  Aligned_cols=85  Identities=14%  Similarity=0.182  Sum_probs=64.6

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCH---HHHHHHHHc----CC----CCCCCCCChHHHHHH
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTN---VDVLHYVRG----GG----RLNRPANCSHLIRSR   70 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~----~~----~~~~~~~~~~~~~~~   70 (88)
                      +.|++||.+.+..++.+.|+|++|++++++++ |..||.+...   .+....+..    ..    ....+..+.+++..|
T Consensus       177 ~~Y~aPE~~~~~~~s~~sDvwSlGvil~ellt-G~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~p~~l~~li~~c  255 (483)
T 3sv0_A          177 ARYASVNTHLGIEQSRRDDLESLGYVLMYFLR-GSLPWQGLKAGTKKQKYEKISEKKVATSIEALCRGYPTEFASYFHYC  255 (483)
T ss_dssp             TTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHH-SSCTTSSCCCSSHHHHHHHHHHHHHHSCHHHHHTTSCHHHHHHHHHH
T ss_pred             ccccCHHHhcCCCCChHHHHHHHHHHHHHHHh-CCCCCccccchhHHHHHHHHhhccccccHHHHhcCCcHHHHHHHHHH
Confidence            46999999988889999999999999999999 9999976432   222222211    10    123456677888999


Q ss_pred             HhhCcccCCChhhhhhc
Q psy8478          71 NRLTENKAPSAVSKKRI   87 (88)
Q Consensus        71 l~~~~~~rp~~~~~~~~   87 (88)
                      +..+|.+||++.++.+.
T Consensus       256 l~~dP~~RPs~~el~~~  272 (483)
T 3sv0_A          256 RSLRFDDKPDYSYLKRL  272 (483)
T ss_dssp             HTCCTTCCCCHHHHHHH
T ss_pred             hcCChhhCcCHHHHHHH
Confidence            99999999999988653

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=99.50  E-value=9.8e-14  Score=74.17  Aligned_cols=84  Identities=20%  Similarity=0.412  Sum_probs=61.0

Q ss_pred             CcccCcchhcc-----------CCCCchhhHHHHHHHHHHHHhcCCCCCCCCC-HHHHHHHHHcC-CCCCCC----CCCh
Q psy8478           2 TRWMAPECLVD-----------GLFSSQSDVWAFGVLLWEIMSLGQQPYPART-NVDVLHYVRGG-GRLNRP----ANCS   64 (88)
Q Consensus         2 ~~~~~pe~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~-~~~~~~----~~~~   64 (88)
                      +.|++||.+..           ..++.++|+|++|++++++++ |..||.... .......+... .....+    ..+.
T Consensus       192 ~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  270 (313)
T 3cek_A          192 VNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTY-GKTPFQQIINQISKLHAIIDPNHEIEFPDIPEKDLQ  270 (313)
T ss_dssp             GGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHH-SSCTTTTCCSHHHHHHHHHCTTSCCCCCCCSCHHHH
T ss_pred             CCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHh-CCCchhhHHHHHHHHHHHHhcccccCCcccchHHHH
Confidence            46899999865           357779999999999999999 999987543 33333333322 222233    3456


Q ss_pred             HHHHHHHhhCcccCCChhhhhh
Q psy8478          65 HLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        65 ~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                      +++..|+..+|.+||++.++++
T Consensus       271 ~li~~~l~~dp~~Rps~~ell~  292 (313)
T 3cek_A          271 DVLKCCLKRDPKQRISIPELLA  292 (313)
T ss_dssp             HHHHHHTCSSTTTSCCHHHHHT
T ss_pred             HHHHHHccCCcccCcCHHHHhc
Confidence            7888899999999999999865

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=99.50  E-value=6.2e-14  Score=73.63  Aligned_cols=84  Identities=18%  Similarity=0.273  Sum_probs=61.3

Q ss_pred             CcccCcchhccCCC-CchhhHHHHHHHHHHHHhcCCCCCCCCCHH-HHHHHHHcCCC-C----CCCCCChHHHHHHHhhC
Q psy8478           2 TRWMAPECLVDGLF-SSQSDVWAFGVLLWEIMSLGQQPYPARTNV-DVLHYVRGGGR-L----NRPANCSHLIRSRNRLT   74 (88)
Q Consensus         2 ~~~~~pe~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~-~----~~~~~~~~~~~~~l~~~   74 (88)
                      +.|++||.+....+ +.++|+|++|++++++++ |..||...... .....+..... .    ..+..+.+++.+|+..+
T Consensus       171 ~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~  249 (276)
T 2yex_A          171 LPYVAPELLKRREFHAEPVDVWSCGIVLTAMLA-GELPWDQPSDSCQEYSDWKEKKTYLNPWKKIDSAPLALLHKILVEN  249 (276)
T ss_dssp             GGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHH-SSCCCSCSCTTSHHHHHHHTTCTTSTTGGGSCHHHHHHHHHHSCSS
T ss_pred             cCccChHHHhcCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCchHHHHHHHhhhcccccCchhhcCHHHHHHHHHHCCCC
Confidence            46899999877654 668999999999999999 99999765432 22223332211 1    12345667888999999


Q ss_pred             cccCCChhhhhh
Q psy8478          75 ENKAPSAVSKKR   86 (88)
Q Consensus        75 ~~~rp~~~~~~~   86 (88)
                      |.+||++.++.+
T Consensus       250 p~~Rps~~~il~  261 (276)
T 2yex_A          250 PSARITIPDIKK  261 (276)
T ss_dssp             TTTSCCHHHHTT
T ss_pred             chhCCCHHHHhc
Confidence            999999999875

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=99.50  E-value=2.8e-14  Score=79.61  Aligned_cols=85  Identities=25%  Similarity=0.481  Sum_probs=61.1

Q ss_pred             CCcccCcchhc-----cCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC-CCCCC---CCChH----HH
Q psy8478           1 MTRWMAPECLV-----DGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG-RLNRP---ANCSH----LI   67 (88)
Q Consensus         1 ~~~~~~pe~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~---~~~~~----~~   67 (88)
                      ++.|+|||.+.     ...++.++|+|++|++++++++ |..||.+.+..+....+.... ....|   ..+++    ++
T Consensus       239 T~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~ellt-G~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~~s~~~~dLi  317 (437)
T 4aw2_A          239 TPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLY-GETPFYAESLVETYGKIMNHKERFQFPTQVTDVSENAKDLI  317 (437)
T ss_dssp             CGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHHH-SSCTTCCSSHHHHHHHHHTHHHHCCCCSSCCCSCHHHHHHH
T ss_pred             CcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHHh-CCCCCCCCChhHHHHhhhhccccccCCcccccCCHHHHHHH
Confidence            35799999987     3468889999999999999999 999999888888877775321 11222   23444    44


Q ss_pred             HHHHhhCccc--CCChhhhhh
Q psy8478          68 RSRNRLTENK--APSAVSKKR   86 (88)
Q Consensus        68 ~~~l~~~~~~--rp~~~~~~~   86 (88)
                      ..+|..++++  |++++++.+
T Consensus       318 ~~lL~~~~~r~~r~~~~eil~  338 (437)
T 4aw2_A          318 RRLICSREHRLGQNGIEDFKK  338 (437)
T ss_dssp             HTTSSCGGGCTTTTTTHHHHT
T ss_pred             HHHhcccccccCCCCHHHHhC
Confidence            4555445566  888888764

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=99.49  E-value=1.7e-14  Score=79.94  Aligned_cols=84  Identities=20%  Similarity=0.357  Sum_probs=60.8

Q ss_pred             CCcccCcchhc-------cCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcC---CC-C----CCCCCChH
Q psy8478           1 MTRWMAPECLV-------DGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGG---GR-L----NRPANCSH   65 (88)
Q Consensus         1 ~~~~~~pe~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~-~----~~~~~~~~   65 (88)
                      ++.|+|||.+.       ...++.++|+|++|++++++++ |..||.+.+..+....+...   .. +    ..+..+.+
T Consensus       226 t~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyellt-G~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~~s~~~~d  304 (412)
T 2vd5_A          226 TPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFY-GQTPFYADSTAETYGKIVHYKEHLSLPLVDEGVPEEARD  304 (412)
T ss_dssp             CGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHH-SSCTTCCSSHHHHHHHHHTHHHHCCCC----CCCHHHHH
T ss_pred             ccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHh-CCCCCCCCCHHHHHHHHHhcccCcCCCccccCCCHHHHH
Confidence            35799999987       3467889999999999999999 99999988888777776532   11 1    12333445


Q ss_pred             HHHHHHhhCcccC---CChhhhhh
Q psy8478          66 LIRSRNRLTENKA---PSAVSKKR   86 (88)
Q Consensus        66 ~~~~~l~~~~~~r---p~~~~~~~   86 (88)
                      ++.+||. ++.+|   ++++++.+
T Consensus       305 li~~lL~-~p~~Rlgr~~~~ei~~  327 (412)
T 2vd5_A          305 FIQRLLC-PPETRLGRGGAGDFRT  327 (412)
T ss_dssp             HHHTTSS-CGGGCTTTTTHHHHHT
T ss_pred             HHHHHcC-ChhhcCCCCCHHHHhc
Confidence            5556665 67777   57877753

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=99.49  E-value=1.1e-14  Score=78.71  Aligned_cols=79  Identities=14%  Similarity=0.273  Sum_probs=59.5

Q ss_pred             CcccCcchhccCCC-CchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC--CCCCCCCChHHHHHHHhhCcccC
Q psy8478           2 TRWMAPECLVDGLF-SSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG--RLNRPANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         2 ~~~~~pe~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~l~~~~~~r   78 (88)
                      +.|++||.+.+..+ +.++|+|++|++++++++ |..||.....     .+....  +...+..+.+++..|+..+|.+|
T Consensus       193 ~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~-g~~pf~~~~~-----~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R  266 (335)
T 3dls_A          193 IEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVF-EENPFCELEE-----TVEAAIHPPYLVSKELMSLVSGLLQPVPERR  266 (335)
T ss_dssp             GGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHH-SSCSCSSGGG-----GTTTCCCCSSCCCHHHHHHHHHHTCSSGGGS
T ss_pred             ccccChhhhcCCCCCCCcccchhHHHHHHHHHh-CCCchhhHHH-----HHhhccCCCcccCHHHHHHHHHHccCChhhC
Confidence            57999999987766 778999999999999999 9999865221     111111  11234456778888999999999


Q ss_pred             CChhhhhh
Q psy8478          79 PSAVSKKR   86 (88)
Q Consensus        79 p~~~~~~~   86 (88)
                      |++.++.+
T Consensus       267 ps~~ell~  274 (335)
T 3dls_A          267 TTLEKLVT  274 (335)
T ss_dssp             CCHHHHHH
T ss_pred             cCHHHHhc
Confidence            99999865

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=99.49  E-value=2.8e-14  Score=76.58  Aligned_cols=79  Identities=24%  Similarity=0.531  Sum_probs=59.6

Q ss_pred             CcccCcchhccCCC-CchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcC--CCCCCCCCChHHHHHHHhhCcccC
Q psy8478           2 TRWMAPECLVDGLF-SSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGG--GRLNRPANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         2 ~~~~~pe~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~~~~~l~~~~~~r   78 (88)
                      +.|++||.+....+ +.++|+|++|++++++++ |..||....  +.   +...  .....+..+.+++..|+..+|.+|
T Consensus       212 ~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~-g~~pf~~~~--~~---~~~~~~~~~~~~~~~~~li~~~l~~dp~~R  285 (320)
T 3a99_A          212 RVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVC-GDIPFEHDE--EI---IRGQVFFRQRVSSECQHLIRWCLALRPSDR  285 (320)
T ss_dssp             GGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHH-SSCSCCSHH--HH---HHCCCCCSSCCCHHHHHHHHHHTCSSGGGS
T ss_pred             ccCCChHHhccCCCCCccchHHhHHHHHHHHHH-CCCCCCChh--hh---hcccccccccCCHHHHHHHHHHccCChhhC
Confidence            46999999876655 578899999999999999 999986422  11   1111  122345567788889999999999


Q ss_pred             CChhhhhh
Q psy8478          79 PSAVSKKR   86 (88)
Q Consensus        79 p~~~~~~~   86 (88)
                      |+++++++
T Consensus       286 ps~~~ll~  293 (320)
T 3a99_A          286 PTFEEIQN  293 (320)
T ss_dssp             CCHHHHHT
T ss_pred             cCHHHHhc
Confidence            99999875

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=99.49  E-value=2e-14  Score=79.67  Aligned_cols=84  Identities=20%  Similarity=0.394  Sum_probs=62.0

Q ss_pred             CcccCcchhcc---CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCH-HHHHHHHHcCCCC-------CCCCCChHHHHHH
Q psy8478           2 TRWMAPECLVD---GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTN-VDVLHYVRGGGRL-------NRPANCSHLIRSR   70 (88)
Q Consensus         2 ~~~~~pe~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~-------~~~~~~~~~~~~~   70 (88)
                      +.|++||.+..   ..++.++|+|++|++++++++ |..||..... ......+..+...       ..+..+.+++..|
T Consensus       305 ~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~llt-g~~pf~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~  383 (419)
T 3i6u_A          305 PTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLS-GYPPFSEHRTQVSLKDQITSGKYNFIPEVWAEVSEKALDLVKKL  383 (419)
T ss_dssp             CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHH-SSCSSCCCSSSCCHHHHHHTTCCCCCHHHHTTSCHHHHHHHHHH
T ss_pred             CCccCceeeecCCCCCCCchhhhHhHHHHHHHHHH-CCCCCCCCcchHHHHHHHhcCCCCCCchhhcccCHHHHHHHHHH
Confidence            57999999853   457789999999999999999 9999975432 2233344433221       2344566788899


Q ss_pred             HhhCcccCCChhhhhh
Q psy8478          71 NRLTENKAPSAVSKKR   86 (88)
Q Consensus        71 l~~~~~~rp~~~~~~~   86 (88)
                      +..+|.+||+++++++
T Consensus       384 L~~dP~~Rps~~e~l~  399 (419)
T 3i6u_A          384 LVVDPKARFTTEEALR  399 (419)
T ss_dssp             SCSSTTTSCCHHHHHH
T ss_pred             ccCChhHCcCHHHHhC
Confidence            9999999999999865

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=99.49  E-value=2.6e-14  Score=76.63  Aligned_cols=84  Identities=30%  Similarity=0.515  Sum_probs=61.8

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHH---------------HHHHHHHcCCCCCCCCC----C
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNV---------------DVLHYVRGGGRLNRPAN----C   63 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~~~~~~~~~~~----~   63 (88)
                      .|++||.+....++.++|+|++|++++++++ |..|+......               +....+..+...+.+..    +
T Consensus       202 ~y~aPE~~~~~~~~~~~Di~slG~il~~ll~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  280 (318)
T 3lxp_A          202 FWYAPECLKEYKFYYASDVWSFGVTLYELLT-HCDSSQSPPTKFLELIGIAQGQMTVLRLTELLERGERLPRPDKCPAEV  280 (318)
T ss_dssp             GGCCHHHHHHCEEEHHHHHHHHHHHHHHHHT-TTCGGGSHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCCCCCTTCCHHH
T ss_pred             eeeChHHhcCCCCCcHHHHHHHHHHHHHHHh-CCCcccccchhhhhhhcccccchhHHHHHHHHhcccCCCCCccccHHH
Confidence            4899999988888889999999999999999 88887542211               12233334444444444    5


Q ss_pred             hHHHHHHHhhCcccCCChhhhhhc
Q psy8478          64 SHLIRSRNRLTENKAPSAVSKKRI   87 (88)
Q Consensus        64 ~~~~~~~l~~~~~~rp~~~~~~~~   87 (88)
                      .+++..|+..+|.+||++.++.+.
T Consensus       281 ~~li~~~l~~dP~~Rps~~ell~~  304 (318)
T 3lxp_A          281 YHLMKNCWETEASFRPTFENLIPI  304 (318)
T ss_dssp             HHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             HHHHHHHcCCCcccCcCHHHHHHH
Confidence            567778888999999999998753

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=99.49  E-value=2e-14  Score=77.18  Aligned_cols=84  Identities=26%  Similarity=0.439  Sum_probs=48.6

Q ss_pred             CcccCcchhc----cCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCH-HHHHHHHHcCCCCC--------CCCCChHHHH
Q psy8478           2 TRWMAPECLV----DGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTN-VDVLHYVRGGGRLN--------RPANCSHLIR   68 (88)
Q Consensus         2 ~~~~~pe~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~--------~~~~~~~~~~   68 (88)
                      +.|++||.+.    ...++.++|+|++|++++++++ |..||..... .+....+..+..+.        .+..+.+++.
T Consensus       189 ~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~  267 (327)
T 3aln_A          189 RPYMAPERIDPSASRQGYDVRSDVWSLGITLYELAT-GRFPYPKWNSVFDQLTQVVKGDPPQLSNSEEREFSPSFINFVN  267 (327)
T ss_dssp             -----------------CCSHHHHHHHHHHHHHHHH-SCCCSSCC-------CCCCCSCCCCCCCCSSCCCCHHHHHHHH
T ss_pred             ccccCceeeccccCcCCCCchhhHHHHHHHHHHHHH-CCCCCCCcchHHHHHHHHhcCCCCCCCCcccccCCHHHHHHHH
Confidence            4689999983    4567889999999999999999 9999875432 12222222222221        2234557888


Q ss_pred             HHHhhCcccCCChhhhhh
Q psy8478          69 SRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        69 ~~l~~~~~~rp~~~~~~~   86 (88)
                      .|+..+|.+||++.++.+
T Consensus       268 ~~l~~dp~~Rps~~ell~  285 (327)
T 3aln_A          268 LCLTKDESKRPKYKELLK  285 (327)
T ss_dssp             HHTCSSGGGSCCHHHHTT
T ss_pred             HHhhCChhhCcCHHHHHh
Confidence            899999999999999865

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=99.48  E-value=1.6e-14  Score=77.59  Aligned_cols=84  Identities=19%  Similarity=0.301  Sum_probs=59.2

Q ss_pred             CcccCcchhcc-CCCCchhhHHHHHHHHHHHHhcCCCCCCCC-CHHHHHHHH-------------HcCCC-C--------
Q psy8478           2 TRWMAPECLVD-GLFSSQSDVWAFGVLLWEIMSLGQQPYPAR-TNVDVLHYV-------------RGGGR-L--------   57 (88)
Q Consensus         2 ~~~~~pe~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i-------------~~~~~-~--------   57 (88)
                      ..|++||.+.. ..++.++|+|++|++++++++ |..||... ...+....+             ..... .        
T Consensus       194 ~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (330)
T 3nsz_A          194 RYFKGPELLVDYQMYDYSLDMWSLGCMLASMIF-RKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDIL  272 (330)
T ss_dssp             GGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHH-TCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTCCCCTHHHHHH
T ss_pred             ccccChhhhcCCCcCCchhhHHHHHHHHHHHHh-CCCCcccCCchHHHHHHHHHhcCCchhhhHHHHhccccccchhhhh
Confidence            45899999876 568889999999999999999 88888533 332222211             11100 0        


Q ss_pred             ------------------CCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          58 ------------------NRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        58 ------------------~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                                        ..+..+.+++.+||..+|.+|||++++++
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpta~e~l~  319 (330)
T 3nsz_A          273 GRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAME  319 (330)
T ss_dssp             CCCCCCCGGGGCCTTTGGGCCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred             hhccccchhhhccccccccCCHHHHHHHHHHhcCCcccCCCHHHHhc
Confidence                              02344567888899999999999999875

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=99.48  E-value=2.4e-14  Score=76.53  Aligned_cols=84  Identities=20%  Similarity=0.316  Sum_probs=58.2

Q ss_pred             CcccCcchhccCC---CCchhhHHHHHHHHHHHHhcCCCCCCCCC--HHHHHHHHHcCCCCC----CCCCChHHHHHHHh
Q psy8478           2 TRWMAPECLVDGL---FSSQSDVWAFGVLLWEIMSLGQQPYPART--NVDVLHYVRGGGRLN----RPANCSHLIRSRNR   72 (88)
Q Consensus         2 ~~~~~pe~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~----~~~~~~~~~~~~l~   72 (88)
                      +.|++||.+....   ++.++|+|++|++++++++ |..||....  .......+......+    .+..+.+++..|+.
T Consensus       207 ~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~  285 (317)
T 2buj_A          207 ISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMF-GEGPYDMVFQKGDSVALAVQNQLSIPQSPRHSSALWQLLNSMMT  285 (317)
T ss_dssp             GGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHH-SSCTTHHHHHTTSCHHHHHHCC--CCCCTTSCHHHHHHHHHHTC
T ss_pred             cccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHh-CCCChhhhhcccchhhHHhhccCCCCccccCCHHHHHHHHHHhh
Confidence            4699999886543   6789999999999999999 999884210  011122222222222    23446678888999


Q ss_pred             hCcccCCChhhhhh
Q psy8478          73 LTENKAPSAVSKKR   86 (88)
Q Consensus        73 ~~~~~rp~~~~~~~   86 (88)
                      .+|.+||++.++.+
T Consensus       286 ~dp~~Rps~~~ll~  299 (317)
T 2buj_A          286 VDPHQRPHIPLLLS  299 (317)
T ss_dssp             SSGGGSCCHHHHHH
T ss_pred             cChhhCCCHHHHHH
Confidence            99999999999865

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=99.48  E-value=3.6e-15  Score=81.38  Aligned_cols=84  Identities=12%  Similarity=0.126  Sum_probs=60.2

Q ss_pred             CcccCcchhcc--CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHH--HHH---HHc---CCCC----CCCCCChHHH
Q psy8478           2 TRWMAPECLVD--GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDV--LHY---VRG---GGRL----NRPANCSHLI   67 (88)
Q Consensus         2 ~~~~~pe~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---i~~---~~~~----~~~~~~~~~~   67 (88)
                      +.|++||.+..  ..++.++|+|++|++++++++ |..||........  ...   ...   ....    ..+..+.+++
T Consensus       255 ~~y~aPE~~~~~~~~~~~~~DiwSlG~il~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li  333 (371)
T 3q60_A          255 VTYAPREFLNASTATFTHALNAWQLGLSIYRVWC-LFLPFGLVTPGIKGSWKRPSLRVPGTDSLAFGSCTPLPDFVKTLI  333 (371)
T ss_dssp             GGGCCHHHHTCSEEECCHHHHHHHHHHHHHHHHH-SSCSTTBCCTTCTTCCCBCCTTSCCCCSCCCTTSSCCCHHHHHHH
T ss_pred             cCCcChhhccCCCCCcCccccHHHHHHHHHHHHh-CCCCCCCcCcccccchhhhhhhhccccccchhhccCCCHHHHHHH
Confidence            56999999987  578899999999999999999 9999976532110  000   000   0011    2234456788


Q ss_pred             HHHHhhCcccCCChhhhhh
Q psy8478          68 RSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        68 ~~~l~~~~~~rp~~~~~~~   86 (88)
                      .+|+..+|.+||++.++++
T Consensus       334 ~~~L~~dP~~Rpt~~e~l~  352 (371)
T 3q60_A          334 GRFLNFDRRRRLLPLEAME  352 (371)
T ss_dssp             HHHTCSSTTTCCCHHHHTT
T ss_pred             HHHcCCChhhCCCHHHHhc
Confidence            8899999999999999865

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=99.48  E-value=2.9e-14  Score=75.11  Aligned_cols=81  Identities=17%  Similarity=0.265  Sum_probs=59.0

Q ss_pred             CcccCcchhccC-CCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCC----CCChHHHHHHHhhCcc
Q psy8478           2 TRWMAPECLVDG-LFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRP----ANCSHLIRSRNRLTEN   76 (88)
Q Consensus         2 ~~~~~pe~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~l~~~~~   76 (88)
                      +.|++||.+... .++.++|+|++|+++++++. +..++....   ....+..+..+..+    ..+.+++..|+..+|.
T Consensus       194 ~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~  269 (289)
T 1x8b_A          194 SRFLANEVLQENYTHLPKADIFALALTVVCAAG-AEPLPRNGD---QWHEIRQGRLPRIPQVLSQEFTELLKVMIHPDPE  269 (289)
T ss_dssp             GGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTT-CCCCCSSSH---HHHHHHTTCCCCCSSCCCHHHHHHHHHHTCSSGG
T ss_pred             ccccChhHhcCCCCCCchhhHHHHHHHHHHHhc-CCCCCcchh---HHHHHHcCCCCCCCcccCHHHHHHHHHHhCCCcc
Confidence            568999998765 55678999999999999887 766554332   23344444433333    3456677788889999


Q ss_pred             cCCChhhhhh
Q psy8478          77 KAPSAVSKKR   86 (88)
Q Consensus        77 ~rp~~~~~~~   86 (88)
                      +||++.++.+
T Consensus       270 ~Rps~~~ll~  279 (289)
T 1x8b_A          270 RRPSAMALVK  279 (289)
T ss_dssp             GSCCHHHHHT
T ss_pred             cCCCHHHHhh
Confidence            9999999875

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=99.47  E-value=1.7e-13  Score=72.60  Aligned_cols=84  Identities=18%  Similarity=0.282  Sum_probs=59.1

Q ss_pred             CcccCcchhccC--CCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHH-H-HHHHHcCCCCCCCCC----ChHHHHHHHhh
Q psy8478           2 TRWMAPECLVDG--LFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVD-V-LHYVRGGGRLNRPAN----CSHLIRSRNRL   73 (88)
Q Consensus         2 ~~~~~pe~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~i~~~~~~~~~~~----~~~~~~~~l~~   73 (88)
                      +.|++||.+...  .++.+.|+|++|++++++++ |..||....... . .........+..+..    +.+++..|+..
T Consensus       187 ~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~  265 (295)
T 2clq_A          187 LQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMAT-GKPPFYELGEPQAAMFKVGMFKVHPEIPESMSAEAKAFILKCFEP  265 (295)
T ss_dssp             GGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHH-TSCTTGGGSSHHHHHHHHHHHCCCCCCCTTSCHHHHHHHHHTTCS
T ss_pred             ccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHH-CCCCccCCCchhHHHHhhccccccccccccCCHHHHHHHHHHccC
Confidence            468999998754  37789999999999999999 999986543222 1 121122223333433    45677778888


Q ss_pred             CcccCCChhhhhh
Q psy8478          74 TENKAPSAVSKKR   86 (88)
Q Consensus        74 ~~~~rp~~~~~~~   86 (88)
                      +|.+||++.++++
T Consensus       266 dp~~Rps~~~ll~  278 (295)
T 2clq_A          266 DPDKRACANDLLV  278 (295)
T ss_dssp             STTTSCCHHHHHT
T ss_pred             ChhhCCCHHHHhc
Confidence            8999999999864

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=99.47  E-value=3.5e-14  Score=74.80  Aligned_cols=82  Identities=17%  Similarity=0.223  Sum_probs=61.5

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC-CCCCCCCChHHHHHHHhhCcccCCC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG-RLNRPANCSHLIRSRNRLTENKAPS   80 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~l~~~~~~rp~   80 (88)
                      +.|++||.+....++.++|+|++|++++++++ +..++..  .......+..+. ....+..+.+++.+|+..+|.+||+
T Consensus       185 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps  261 (284)
T 2a19_B          185 LRYMSPEQISSQDYGKEVDLYALGLILAELLH-VCDTAFE--TSKFFTDLRDGIISDIFDKKEKTLLQKLLSKKPEDRPN  261 (284)
T ss_dssp             CTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHS-CCSSHHH--HHHHHHHHHTTCCCTTSCHHHHHHHHHHTCSSGGGSCC
T ss_pred             ccccChhhhccCCCcchhhhHHHHHHHHHHHh-cCCcchh--HHHHHHHhhcccccccCCHHHHHHHHHHccCChhhCcC
Confidence            56899999988888999999999999999998 7666532  222333343332 2233455678889999999999999


Q ss_pred             hhhhhh
Q psy8478          81 AVSKKR   86 (88)
Q Consensus        81 ~~~~~~   86 (88)
                      +.++.+
T Consensus       262 ~~e~l~  267 (284)
T 2a19_B          262 TSEILR  267 (284)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999865

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=99.46  E-value=7.5e-14  Score=74.90  Aligned_cols=84  Identities=20%  Similarity=0.392  Sum_probs=61.9

Q ss_pred             CcccCcchhc---cCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCH-HHHHHHHHcCCCC-------CCCCCChHHHHHH
Q psy8478           2 TRWMAPECLV---DGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTN-VDVLHYVRGGGRL-------NRPANCSHLIRSR   70 (88)
Q Consensus         2 ~~~~~pe~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~-------~~~~~~~~~~~~~   70 (88)
                      +.|++||.+.   ...++.++|+|++|++++++++ |..||..... ......+..+...       ..+..+.+++.+|
T Consensus       180 ~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~  258 (322)
T 2ycf_A          180 PTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLS-GYPPFSEHRTQVSLKDQITSGKYNFIPEVWAEVSEKALDLVKKL  258 (322)
T ss_dssp             CTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHH-SSCSSCSTTCSSCHHHHHHHTCCCCCHHHHTTSCHHHHHHHHHH
T ss_pred             cCccCchhhccCCCCCCCchhhHHHHHHHHHHHHh-CCCCCcccchHHHHHHHHHhCccccCchhhhhcCHHHHHHHHHH
Confidence            5789999874   3467889999999999999999 9999865432 2233334333221       2344566788899


Q ss_pred             HhhCcccCCChhhhhh
Q psy8478          71 NRLTENKAPSAVSKKR   86 (88)
Q Consensus        71 l~~~~~~rp~~~~~~~   86 (88)
                      +..+|.+||++.++++
T Consensus       259 l~~dP~~Rps~~~~l~  274 (322)
T 2ycf_A          259 LVVDPKARFTTEEALR  274 (322)
T ss_dssp             SCSSTTTSCCHHHHHT
T ss_pred             cccCHhhCCCHHHHhh
Confidence            9999999999999865

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=99.46  E-value=2.9e-13  Score=73.66  Aligned_cols=83  Identities=22%  Similarity=0.397  Sum_probs=59.6

Q ss_pred             CcccCcchhccC--CCCchhhHHHHHHHHHHHHhcCCCCCCCC----CHHHHHHHHHcCCCCCCCC----CChHHHHHHH
Q psy8478           2 TRWMAPECLVDG--LFSSQSDVWAFGVLLWEIMSLGQQPYPAR----TNVDVLHYVRGGGRLNRPA----NCSHLIRSRN   71 (88)
Q Consensus         2 ~~~~~pe~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~----~~~~~~~~~l   71 (88)
                      +.|++||.+.+.  .++.++|+|++|++++++++ |..||...    ....+...+.... ++.+.    .+.+++..|+
T Consensus       224 ~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~-g~~pf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~~L  301 (355)
T 1vzo_A          224 IEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLT-GASPFTVDGEKNSQAEISRRILKSE-PPYPQEMSALAKDLIQRLL  301 (355)
T ss_dssp             CTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHH-SSCTTSCTTSCCCHHHHHHHHHHCC-CCCCTTSCHHHHHHHHHHT
T ss_pred             cCccChhhhcCCCCCCCchhhHHHHHHHHHHHHH-CCCCCccCCccchHHHHHHHHhccC-CCCCcccCHHHHHHHHHHh
Confidence            569999998753  46789999999999999999 99998643    2344444444332 22333    3456788899


Q ss_pred             hhCcccCC-----Chhhhhh
Q psy8478          72 RLTENKAP-----SAVSKKR   86 (88)
Q Consensus        72 ~~~~~~rp-----~~~~~~~   86 (88)
                      ..+|.+||     +++++++
T Consensus       302 ~~dP~~R~~~~~~s~~ell~  321 (355)
T 1vzo_A          302 MKDPKKRLGCGPRDADEIKE  321 (355)
T ss_dssp             CSSGGGSTTSSTTTHHHHHT
T ss_pred             hhCHHHhcCCCCCCHHHHHc
Confidence            99999999     8888764

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=99.46  E-value=3.4e-15  Score=80.05  Aligned_cols=84  Identities=19%  Similarity=0.302  Sum_probs=58.5

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHH------HH-HHHHcCC-----CCCCC--------C
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVD------VL-HYVRGGG-----RLNRP--------A   61 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-~~i~~~~-----~~~~~--------~   61 (88)
                      +.|++||.+....++.++|+|++|++++++++ |..||......+      .. .....+.     .....        .
T Consensus       205 ~~y~aPE~~~~~~~~~~~Di~slG~il~ell~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (321)
T 2qkw_B          205 LGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLC-ARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNLADKIRPESLR  283 (321)
T ss_dssp             TTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHH-CCTTCSCSSSSSCCCHHHHTHHHHTTTCCCSSSSSSCTTCSCHHHHH
T ss_pred             ccccCHHHhcCCCCCcccchHhHHHHHHHHHh-CCCcccccCcHHHHHHHHHhhhccccccHHHhcChhhccccCHHHHH
Confidence            46899999988888999999999999999999 988886533211      10 1111110     00111        1


Q ss_pred             CChHHHHHHHhhCcccCCChhhhhh
Q psy8478          62 NCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        62 ~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                      .+.+++..|+..+|.+||++.++.+
T Consensus       284 ~l~~li~~~l~~dP~~Rps~~ell~  308 (321)
T 2qkw_B          284 KFGDTAVKCLALSSEDRPSMGDVLW  308 (321)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             HHHHHHHHHcCCCcccCcCHHHHHH
Confidence            2346777899999999999999865

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=99.45  E-value=5.4e-14  Score=75.38  Aligned_cols=82  Identities=16%  Similarity=0.258  Sum_probs=59.2

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCC----CCCCChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLN----RPANCSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~l~~~~~~   77 (88)
                      +.|++||.+.+..++.++|+|++|++++++++ |..++.  ........+.....+.    .+..+.+++..|+..+|.+
T Consensus       240 ~~y~aPE~~~~~~~~~~~Di~slG~il~el~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~  316 (332)
T 3qd2_B          240 KLYMSPEQIHGNNYSHKVDIFSLGLILFELLY-SFSTQM--ERVRIITDVRNLKFPLLFTQKYPQEHMMVQDMLSPSPTE  316 (332)
T ss_dssp             GGGSCHHHHHCCCCCTHHHHHHHHHHHHHHHS-CCCCHH--HHHHHHHHHHTTCCCHHHHHHCHHHHHHHHHHHCSSGGG
T ss_pred             cCccChHHhcCCCCcchhhHHHHHHHHHHHHH-cCCChh--HHHHHHHHhhccCCCcccccCChhHHHHHHHHccCCCCc
Confidence            56999999988889999999999999999998 655432  1222233333332111    1234567889999999999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||++.++++
T Consensus       317 Rps~~~~l~  325 (332)
T 3qd2_B          317 RPEATDIIE  325 (332)
T ss_dssp             SCCHHHHHH
T ss_pred             CCCHHHHhh
Confidence            999999875

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=99.44  E-value=1.3e-13  Score=74.13  Aligned_cols=83  Identities=29%  Similarity=0.510  Sum_probs=59.7

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCH----------------HHHHHHHHcCCCCCCCCC----
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTN----------------VDVLHYVRGGGRLNRPAN----   62 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~i~~~~~~~~~~~----   62 (88)
                      .|++||.+....++.++|+|++|++++++++ |..|+.....                ......+..+...+.+..    
T Consensus       213 ~y~aPE~~~~~~~~~~~Di~slG~il~el~t-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (326)
T 2w1i_A          213 FWYAPESLTESKFSVASDVWSFGVVLYELFT-YIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRLPRPDGCPDE  291 (326)
T ss_dssp             GGCCHHHHHHCEEEHHHHHHHHHHHHHHHHH-TTCGGGSHHHHHHHHHCTTCCTHHHHHHHHHHHHTTCCCCCCTTCCHH
T ss_pred             eEECchhhcCCCCCchhhHHHHHHHHHHHHh-cCCCCCCCHHHHHHhhccccchhhhHHHHHHHhhcCCCCCCCCcccHH
Confidence            4899999988788889999999999999999 8777642210                112233344434444444    


Q ss_pred             ChHHHHHHHhhCcccCCChhhhhh
Q psy8478          63 CSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        63 ~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                      +.+++..|+..+|.+||++.++.+
T Consensus       292 l~~li~~cl~~dP~~Rps~~el~~  315 (326)
T 2w1i_A          292 IYMIMTECWNNNVNQRPSFRDLAL  315 (326)
T ss_dssp             HHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             HHHHHHHHcCCChhhCcCHHHHHH
Confidence            456777888889999999999865

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=99.44  E-value=7.5e-13  Score=71.21  Aligned_cols=84  Identities=26%  Similarity=0.424  Sum_probs=56.9

Q ss_pred             CcccCcchhccCCCCch------hhHHHHHHHHHHHHhcC----------CCCCCCCC-----HHHHHHHHH-cCCCCCC
Q psy8478           2 TRWMAPECLVDGLFSSQ------SDVWAFGVLLWEIMSLG----------QQPYPART-----NVDVLHYVR-GGGRLNR   59 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~------~~~~~~~~~~~~~~~~~----------~~~~~~~~-----~~~~~~~i~-~~~~~~~   59 (88)
                      +.|++||.+....+...      +|+|++|++++++++ |          ..||....     .......+. ....+..
T Consensus       210 ~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~t-g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (337)
T 3mdy_A          210 KRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVAR-RCVSGGIVEEYQLPYHDLVPSDPSYEDMREIVCIKKLRPSF  288 (337)
T ss_dssp             GGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHT-TBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCC
T ss_pred             cceeChhhcccccCCccccCccccchHHHHHHHHHHHh-ccCcccccccccccHhhhcCCCCchhhhHHHHhhhccCccc
Confidence            56999999876655443      899999999999999 7          56664321     122222222 1222323


Q ss_pred             CC---------CChHHHHHHHhhCcccCCChhhhhh
Q psy8478          60 PA---------NCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        60 ~~---------~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                      +.         .+.+++..|+..+|.+||++.++.+
T Consensus       289 ~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~  324 (337)
T 3mdy_A          289 PNRWSSDECLRQMGKLMTECWAHNPASRLTALRVKK  324 (337)
T ss_dssp             CGGGGGSHHHHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             cccchhhHHHHHHHHHHHHhhhhChhhCCCHHHHHH
Confidence            32         1446888899999999999999875

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=99.44  E-value=5.3e-14  Score=75.74  Aligned_cols=84  Identities=24%  Similarity=0.319  Sum_probs=56.0

Q ss_pred             CcccCcchhcc-------CCCCchhhHHHHHHHHHHHHhcCCCCC-CCCC-----------------HHHHHHHHH-cCC
Q psy8478           2 TRWMAPECLVD-------GLFSSQSDVWAFGVLLWEIMSLGQQPY-PART-----------------NVDVLHYVR-GGG   55 (88)
Q Consensus         2 ~~~~~pe~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----------------~~~~~~~i~-~~~   55 (88)
                      +.|++||.+.+       ..++.++|+|++|++++++++ |..|+ .+..                 .......+. ...
T Consensus       192 ~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (336)
T 3g2f_A          192 IRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFM-RCTDLFPGESVPEYQMAFQTEVGNHPTFEDMQVLVSREKQ  270 (336)
T ss_dssp             GGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHT-TBGGGSTTSCCCCCCCTTHHHHCSSCCHHHHHHHHTTSCC
T ss_pred             cceeCchhhcCCcccccccccccccchHHHHHHHHHHHh-cCCcCCCccchhHHHHhhhcccCCCchHHHHHhhhccccc
Confidence            57999999875       345568999999999999998 65443 2211                 111111121 122


Q ss_pred             CCCCCC----------CChHHHHHHHhhCcccCCChhhhhh
Q psy8478          56 RLNRPA----------NCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        56 ~~~~~~----------~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                      ++..+.          .+.+++.+|+..+|++|||+.++.+
T Consensus       271 ~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~e~l~  311 (336)
T 3g2f_A          271 RPKFPEAWKENSLAVRSLKETIEDCWDQDAEARLTAQXAEE  311 (336)
T ss_dssp             CCCCCTTCCCCSHHHHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             CCCCCcccccccchHHHHHHHHHHHhcCChhhCcchHHHHH
Confidence            333333          2567888999999999999999865

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=99.44  E-value=1.5e-13  Score=76.81  Aligned_cols=32  Identities=25%  Similarity=0.641  Sum_probs=27.5

Q ss_pred             CcccCcchhc-cCCCCchhhHHHHHHHHHHHHh
Q psy8478           2 TRWMAPECLV-DGLFSSQSDVWAFGVLLWEIMS   33 (88)
Q Consensus         2 ~~~~~pe~~~-~~~~~~~~~~~~~~~~~~~~~~   33 (88)
                      +.|+|||.+. ...++.++|+|++|++++++++
T Consensus       247 ~~Y~aPE~~~~~~~~~~~~DiwSlG~il~ellt  279 (458)
T 3rp9_A          247 RWYRAPELILLQENYTEAIDVWSIGCIFAELLN  279 (458)
T ss_dssp             CTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHT
T ss_pred             ccccChHHhhCCCCCCcHhHHHHHHHHHHHHHH
Confidence            3499999864 4568999999999999999986

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=99.43  E-value=3e-13  Score=72.94  Aligned_cols=84  Identities=27%  Similarity=0.407  Sum_probs=57.7

Q ss_pred             CcccCcchhccCC------CCchhhHHHHHHHHHHHHhcC----------CCCCCCC-----CHHHHHHHHHcC-CCCCC
Q psy8478           2 TRWMAPECLVDGL------FSSQSDVWAFGVLLWEIMSLG----------QQPYPAR-----TNVDVLHYVRGG-GRLNR   59 (88)
Q Consensus         2 ~~~~~pe~~~~~~------~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~-----~~~~~~~~i~~~-~~~~~   59 (88)
                      +.|++||.+....      ++.++|+|++|++++++++ |          ..||...     ........+... .++..
T Consensus       215 ~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~t-g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (342)
T 1b6c_B          215 KRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIAR-RCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNI  293 (342)
T ss_dssp             GGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHT-TBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCC
T ss_pred             cccCCHhhhcccccccccccCCcccHHHHHHHHHHHHh-ccCcCCcccccccCccccCcCcccHHHHHHHHHHHHhCCCC
Confidence            4699999987542      2357999999999999998 7          6677543     223334444322 23333


Q ss_pred             CC---------CChHHHHHHHhhCcccCCChhhhhh
Q psy8478          60 PA---------NCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        60 ~~---------~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                      +.         .+.+++..|+..+|.+||++.++.+
T Consensus       294 ~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~i~~  329 (342)
T 1b6c_B          294 PNRWQSCEALRVMAKIMRECWYANGAARLTALRIKK  329 (342)
T ss_dssp             CGGGGTSHHHHHHHHHHHHHCCSSGGGSCCHHHHHH
T ss_pred             cccccchhHHHHHHHHHHHHhccChhhCCCHHHHHH
Confidence            32         2345777788899999999999865

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=99.43  E-value=3e-13  Score=71.87  Aligned_cols=84  Identities=30%  Similarity=0.487  Sum_probs=60.6

Q ss_pred             cccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCC--------------C-CHHHHHHHHHcCCCCCCCCC----C
Q psy8478           3 RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPA--------------R-TNVDVLHYVRGGGRLNRPAN----C   63 (88)
Q Consensus         3 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~-~~~~~~~~i~~~~~~~~~~~----~   63 (88)
                      .|++||.+.+..++.++|+|++|++++++++ |..|+..              . ........+..+...+.+..    +
T Consensus       194 ~y~aPE~~~~~~~~~~~Di~slG~il~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  272 (302)
T 4e5w_A          194 FWYAPECLMQSKFYIASDVWSFGVTLHELLT-YCDSDSSPMALFLKMIGPTHGQMTVTRLVNTLKEGKRLPCPPNCPDEV  272 (302)
T ss_dssp             GGCCHHHHHHCEEEHHHHHHHHHHHHHHHHT-TTCGGGSHHHHHHHHHCSCCGGGHHHHHHHHHHTTCCCCCCTTCCHHH
T ss_pred             cccCCeeecCCCCCcchhHHHHHHHHHHHHH-ccCCCcchhhHHhhccCCcccccCHHHHHHHHhccCCCCCCCCCCHHH
Confidence            4899999988888889999999999999999 7665421              1 12233344444544444444    4


Q ss_pred             hHHHHHHHhhCcccCCChhhhhhc
Q psy8478          64 SHLIRSRNRLTENKAPSAVSKKRI   87 (88)
Q Consensus        64 ~~~~~~~l~~~~~~rp~~~~~~~~   87 (88)
                      .+++..|+..+|.+||++.++.+.
T Consensus       273 ~~li~~~l~~dp~~Rps~~~ll~~  296 (302)
T 4e5w_A          273 YQLMRKCWEFQPSNRTSFQNLIEG  296 (302)
T ss_dssp             HHHHHHTTCSSGGGSCCHHHHHHH
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHH
Confidence            567777888889999999998763

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=99.42  E-value=1.1e-13  Score=74.33  Aligned_cols=84  Identities=26%  Similarity=0.447  Sum_probs=57.7

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCC-----CHHHHHHHHHc---CCCC----------CCC---
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPAR-----TNVDVLHYVRG---GGRL----------NRP---   60 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~---~~~~----------~~~---   60 (88)
                      +.|++||.+....++.++|+|++|++++++++ |..||...     ........+..   ....          ..+   
T Consensus       199 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (326)
T 3uim_A          199 IGHIAPEYLSTGKSSEKTDVFGYGVMLLELIT-GQRAFDLARLANDDDVMLLDWVKGLLKEKKLEALVDVDLQGNYKDEE  277 (326)
T ss_dssp             GGGCCHHHHHHSEECHHHHHHHHHHHHHHHHH-CCCSBCHHHHTTTSCSBHHHHHTTTTSSCCSTTSSCTTCTTSCCHHH
T ss_pred             cCccCHHHhccCCCCccccchhHHHHHHHHHh-CCCcccccccccccchhHHHHHHHHhhchhhhhhcChhhccccCHHH
Confidence            56999999988888999999999999999999 99998511     11111111111   1000          001   


Q ss_pred             -CCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          61 -ANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        61 -~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                       ..+.+++..|+..+|.+||++.++.+
T Consensus       278 ~~~l~~li~~cl~~dP~~Rps~~ell~  304 (326)
T 3uim_A          278 VEQLIQVALLCTQSSPMERPKMSEVVR  304 (326)
T ss_dssp             HHHHHHHHHHHTCSCGGGSCCHHHHHH
T ss_pred             HHHHHHHHHHHhCcCCccCCCHHHHHH
Confidence             12446777899999999999999875

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=99.41  E-value=3.5e-13  Score=71.97  Aligned_cols=79  Identities=19%  Similarity=0.417  Sum_probs=57.9

Q ss_pred             CcccCcchhccCCCC-chhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC--CCCCCCCChHHHHHHHhhCcccC
Q psy8478           2 TRWMAPECLVDGLFS-SQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG--RLNRPANCSHLIRSRNRLTENKA   78 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~l~~~~~~r   78 (88)
                      ..|++||.+....+. .++|+|++|++++++++ |..||....  +.   .....  ....+..+.+++.+|+..+|.+|
T Consensus       202 ~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~-g~~pf~~~~--~~---~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  275 (312)
T 2iwi_A          202 RVYSPPEWISRHQYHALPATVWSLGILLYDMVC-GDIPFERDQ--EI---LEAELHFPAHVSPDCCALIRRCLAPKPSSR  275 (312)
T ss_dssp             TTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHH-SSCSCCSHH--HH---HHTCCCCCTTSCHHHHHHHHHHTCSSTTTS
T ss_pred             ccccCceeeecCCCCCccchHHHHHHHHHHHHH-CCCCCCChH--HH---hhhccCCcccCCHHHHHHHHHHccCChhhC
Confidence            468999988766554 48999999999999999 999986421  11   11111  12234456678888999999999


Q ss_pred             CChhhhhh
Q psy8478          79 PSAVSKKR   86 (88)
Q Consensus        79 p~~~~~~~   86 (88)
                      |+++++.+
T Consensus       276 ps~~e~l~  283 (312)
T 2iwi_A          276 PSLEEILL  283 (312)
T ss_dssp             CCHHHHHH
T ss_pred             cCHHHHhc
Confidence            99999865

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=99.40  E-value=9.8e-13  Score=73.21  Aligned_cols=32  Identities=22%  Similarity=0.608  Sum_probs=27.4

Q ss_pred             CcccCcchhc-cCCCCchhhHHHHHHHHHHHHh
Q psy8478           2 TRWMAPECLV-DGLFSSQSDVWAFGVLLWEIMS   33 (88)
Q Consensus         2 ~~~~~pe~~~-~~~~~~~~~~~~~~~~~~~~~~   33 (88)
                      ..|+|||.+. ...++.++|+|++|++++++++
T Consensus       215 ~~Y~APE~~~~~~~~~~~~DiwSlG~il~ell~  247 (432)
T 3n9x_A          215 RWYRAPELILLQENYTKSIDIWSTGCIFAELLN  247 (432)
T ss_dssp             CTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHT
T ss_pred             ccccCHHHHhcCCCCCcccccchHHHHHHHHHh
Confidence            4589999864 4568899999999999999995

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=99.40  E-value=1.4e-13  Score=75.86  Aligned_cols=84  Identities=15%  Similarity=0.300  Sum_probs=59.8

Q ss_pred             CcccCcchhcc--------CCCCchhhHHHHHHHHHHHHhcCCCCCCC----CCHHHHHHHHHcCCCCC-----------
Q psy8478           2 TRWMAPECLVD--------GLFSSQSDVWAFGVLLWEIMSLGQQPYPA----RTNVDVLHYVRGGGRLN-----------   58 (88)
Q Consensus         2 ~~~~~pe~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~~~~~~-----------   58 (88)
                      +.|++||.+..        ..++.++|+|++|++++++++ |..||..    ....+....+..+.+..           
T Consensus       179 ~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~t-g~~Pf~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  257 (396)
T 4eut_A          179 EEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAAT-GSLPFRPFEGPRRNKEVMYKIITGKPSGAISGVQKAENG  257 (396)
T ss_dssp             CTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHH-SSCSEECTTCTTTCHHHHHHHHHSCCTTCCEEEECSTTC
T ss_pred             ccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHH-CCCCCCCCCcccchHHHHHHHhcCCCcccchhheeccCC
Confidence            57899998764        356678999999999999999 9999853    23344555554443211           


Q ss_pred             -------CC----------CCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          59 -------RP----------ANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        59 -------~~----------~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                             .+          ..+.+++..||..+|.+||++.++++
T Consensus       258 ~~~~~~~~~~~~~l~~~~~~~l~~ll~~~L~~dP~~R~s~~e~l~  302 (396)
T 4eut_A          258 PIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFA  302 (396)
T ss_dssp             CEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHH
T ss_pred             CcccCccCCcccccchHHHhhchHHHHHhhccChhhhccHHHHHH
Confidence                   01          12346778899999999999998854

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=99.37  E-value=2.7e-12  Score=68.07  Aligned_cols=81  Identities=21%  Similarity=0.375  Sum_probs=56.5

Q ss_pred             CcccCcchhccC-CCCchhhHHHHHHHHHHHHhcCCCCCCC-CCHHHHHHHHHcCC---CCCCCCC----ChHHHHHHHh
Q psy8478           2 TRWMAPECLVDG-LFSSQSDVWAFGVLLWEIMSLGQQPYPA-RTNVDVLHYVRGGG---RLNRPAN----CSHLIRSRNR   72 (88)
Q Consensus         2 ~~~~~pe~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~---~~~~~~~----~~~~~~~~l~   72 (88)
                      +.|++||.+.+. .++.++|+|++|++++++++    |+.. ....+....+....   +...+..    +.+++..|+.
T Consensus       194 ~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~----p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~  269 (303)
T 1zy4_A          194 AMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY----PFSTGMERVNILKKLRSVSIEFPPDFDDNKMKVEKKIIRLLID  269 (303)
T ss_dssp             CTTSCHHHHTSCSCCCTHHHHHHHHHHHHHHHS----CCSSHHHHHHHHHHHHSTTCCCCTTCCTTTSHHHHHHHHHHTC
T ss_pred             ccccCcccccCCCCCcchhhHHHHHHHHHHHHh----ccCCchhHHHHHHhccccccccCccccccchHHHHHHHHHHHh
Confidence            458999998764 67889999999999999886    3332 22333444444332   1112222    4678889999


Q ss_pred             hCcccCCChhhhhh
Q psy8478          73 LTENKAPSAVSKKR   86 (88)
Q Consensus        73 ~~~~~rp~~~~~~~   86 (88)
                      .+|.+||++.++.+
T Consensus       270 ~dp~~Rps~~~ll~  283 (303)
T 1zy4_A          270 HDPNKRPGARTLLN  283 (303)
T ss_dssp             SSGGGSCCHHHHHH
T ss_pred             cCcccCcCHHHHhC
Confidence            99999999999865

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=99.37  E-value=4.6e-14  Score=75.17  Aligned_cols=84  Identities=23%  Similarity=0.373  Sum_probs=58.0

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHH----HHHHHHHcCCC----------CCCC----CCC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNV----DVLHYVRGGGR----------LNRP----ANC   63 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~----------~~~~----~~~   63 (88)
                      +.|++||.+.+ .++.++|+|++|++++++++ |..||......    .....+.....          ...+    ..+
T Consensus       199 ~~y~aPE~~~~-~~~~~~Dv~slG~il~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  276 (307)
T 2nru_A          199 TAYMAPEALRG-EITPKSDIYSFGVVLLEIIT-GLPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKMNDADSTSVEAM  276 (307)
T ss_dssp             GGGCCHHHHTT-EECTHHHHHHHHHHHHHHHH-CCCSBCTTBSSSBTTHHHHHHHTTSCCHHHHSCSSCSCCCHHHHHHH
T ss_pred             cCcCChHHhcC-CCCccchhHHHHHHHHHHHH-CCCCcccCcchHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHH
Confidence            46899998764 47789999999999999999 99998754321    12222221110          0111    224


Q ss_pred             hHHHHHHHhhCcccCCChhhhhhc
Q psy8478          64 SHLIRSRNRLTENKAPSAVSKKRI   87 (88)
Q Consensus        64 ~~~~~~~l~~~~~~rp~~~~~~~~   87 (88)
                      .+++..|+..+|.+||++.++.+.
T Consensus       277 ~~li~~cl~~~p~~Rps~~~l~~~  300 (307)
T 2nru_A          277 YSVASQCLHEKKNKRPDIKKVQQL  300 (307)
T ss_dssp             HHHHHHHTCSSTTTSCCHHHHHHH
T ss_pred             HHHHHHHcCCCcccCcCHHHHHHH
Confidence            467888999999999999998753

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=99.23  E-value=1.9e-12  Score=75.45  Aligned_cols=83  Identities=18%  Similarity=0.353  Sum_probs=54.6

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHH---------HHHH-----cC-----CCCCCC--
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVL---------HYVR-----GG-----GRLNRP--   60 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~i~-----~~-----~~~~~~--   60 (88)
                      +.|++||.+.+..++.++|+|++|++++++++ |..||.........         ..+.     .+     ...+.+  
T Consensus       187 ~~Y~APE~l~~~~~s~ksDIwSLGviLyeLlt-G~~Pf~~~~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~~lp~p~~  265 (676)
T 3qa8_A          187 LQYLAPELLEQKKYTVTVDYWSFGTLAFECIT-GFRPFLPNWQPVQWHGKVREKSNEHIVVYDDLTGAVKFSSVLPTPNH  265 (676)
T ss_dssp             CTTCSSCSSCCSCCSTTHHHHHHHHHHHHHHS-SCSSCCSSCHHHHSSTTCC------CCSCCCCSSSCCCCSSSCCSCC
T ss_pred             cccCChHHhccCCCCchhHHHHHHHHHHHHHH-CCCCCCcccchhhhhhhhhcccchhhhhhhhhccccccccccCCchh
Confidence            56899999988888999999999999999999 99998654322110         0000     00     001111  


Q ss_pred             ------CCChHHHHHHHhhCcccCCChhhhh
Q psy8478          61 ------ANCSHLIRSRNRLTENKAPSAVSKK   85 (88)
Q Consensus        61 ------~~~~~~~~~~l~~~~~~rp~~~~~~   85 (88)
                            ..+.+++..|+..+|.+||++.++.
T Consensus       266 l~~~ls~~L~dLI~~mL~~DP~kRPTa~elL  296 (676)
T 3qa8_A          266 LSGILAGKLERWLQCMLMWHQRQRGTDPQNP  296 (676)
T ss_dssp             CCGGGHHHHHHHHHHHSCSSCC---CCTTCC
T ss_pred             hchhhhHHHHHHHHHHccCCHhhCcCHHHHh
Confidence                  1245677889999999999998754

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=99.18  E-value=1.1e-12  Score=71.56  Aligned_cols=80  Identities=11%  Similarity=0.067  Sum_probs=53.9

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcC-CCCCCCCCChHHHHHHHhhCcccCC-
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGG-GRLNRPANCSHLIRSRNRLTENKAP-   79 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~l~~~~~~rp-   79 (88)
                      +.|+|||.+.+..++.++|+|++|++++++++ |..||........  .+... .+.+.+..+.+++..++..++.+|+ 
T Consensus       249 ~~y~aPE~~~~~~~~~~~DiwslG~il~ellt-g~~pf~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~p~~r~~  325 (365)
T 3e7e_A          249 SGFQCVEMLSNKPWNYQIDYFGVAATVYCMLF-GTYMKVKNEGGEC--KPEGLFRRLPHLDMWNEFFHVMLNIPDCHHLP  325 (365)
T ss_dssp             TSCCCHHHHTTCCBSTHHHHHHHHHHHHHHHH-SSCCCEEEETTEE--EECSCCTTCSSHHHHHHHHHHHHCCCCTTCCC
T ss_pred             CCCCChHHhcCCCCCccccHHHHHHHHHHHHh-CCCccccCCCCce--eechhccccCcHHHHHHHHHHHcCCCCCCcch
Confidence            57999999998889999999999999999999 9888853221100  00000 1112234466677778888887775 


Q ss_pred             Chhhh
Q psy8478          80 SAVSK   84 (88)
Q Consensus        80 ~~~~~   84 (88)
                      ++.++
T Consensus       326 ~~~~l  330 (365)
T 3e7e_A          326 SLDLL  330 (365)
T ss_dssp             CHHHH
T ss_pred             HHHHH
Confidence            44444

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=99.18  E-value=1.1e-11  Score=65.93  Aligned_cols=74  Identities=12%  Similarity=0.288  Sum_probs=49.2

Q ss_pred             cCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC---C--------CCCCCCChHHHHHHHhhCcccCCC
Q psy8478          12 DGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG---R--------LNRPANCSHLIRSRNRLTENKAPS   80 (88)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~--------~~~~~~~~~~~~~~l~~~~~~rp~   80 (88)
                      ...++.++|+|++|++++++++ |..||...........+....   .        ...+..+.+++..|+..+|.+||+
T Consensus       172 ~~~~~~~~DiwslG~il~el~t-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rps  250 (299)
T 3m2w_A          172 GEKYDKSCDMWSLGVIMYILLC-GYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMT  250 (299)
T ss_dssp             TCGGGGHHHHHHHHHHHHHHHH-SSCSCCC-------CCSCCSSCTTCCSSCHHHHTTSCHHHHHHHHHHTCSSTTTSCC
T ss_pred             cccCCchhhHHHHHHHHHHHHH-CCCCCCCCcchhhhHHHHHHHhhccccCCchhcccCCHHHHHHHHHHcccChhhCCC
Confidence            3456788999999999999999 999997654433221111110   1        112344667888999999999999


Q ss_pred             hhhhhh
Q psy8478          81 AVSKKR   86 (88)
Q Consensus        81 ~~~~~~   86 (88)
                      +.++.+
T Consensus       251 ~~e~l~  256 (299)
T 3m2w_A          251 ITEFMN  256 (299)
T ss_dssp             HHHHHT
T ss_pred             HHHHhc
Confidence            999865

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.87  E-value=3.8e-11  Score=70.13  Aligned_cols=77  Identities=14%  Similarity=0.149  Sum_probs=51.8

Q ss_pred             CCcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC-CCCCCCCChHHHHHHHhhCcccCC
Q psy8478           1 MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG-RLNRPANCSHLIRSRNRLTENKAP   79 (88)
Q Consensus         1 ~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~l~~~~~~rp   79 (88)
                      ++.|++||.+... ++.++|+|++|++++++++ |..++.+......    .... ....+..+.+++.+|+..+|.+||
T Consensus       240 t~~y~aPE~~~~~-~~~~sDi~slG~~l~~l~~-g~~~~~~~~~~~~----~~~~~~~~~~~~l~~li~~~l~~dP~~R~  313 (681)
T 2pzi_A          240 TPGFQAPEIVRTG-PTVATDIYTVGRTLAALTL-DLPTRNGRYVDGL----PEDDPVLKTYDSYGRLLRRAIDPDPRQRF  313 (681)
T ss_dssp             CTTTSCTTHHHHC-SCHHHHHHHHHHHHHHHHS-CCCEETTEECSSC----CTTCHHHHHCHHHHHHHHHHTCSSGGGSC
T ss_pred             CccccCHHHHcCC-CCCceehhhhHHHHHHHHh-CCCCCcccccccc----cccccccccCHHHHHHHhhhccCChhhCC
Confidence            3579999988754 4779999999999999988 8777653211000    0000 000123456788999999999999


Q ss_pred             Chhh
Q psy8478          80 SAVS   83 (88)
Q Consensus        80 ~~~~   83 (88)
                      +..+
T Consensus       314 ~~~~  317 (681)
T 2pzi_A          314 TTAE  317 (681)
T ss_dssp             SSHH
T ss_pred             CHHH
Confidence            7544

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=98.87  E-value=1.8e-10  Score=61.17  Aligned_cols=71  Identities=17%  Similarity=0.140  Sum_probs=49.4

Q ss_pred             CCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHH---HHHcCCC-------CCCCCCChHHHHHHHhhCcccCCChhh
Q psy8478          14 LFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLH---YVRGGGR-------LNRPANCSHLIRSRNRLTENKAPSAVS   83 (88)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~-------~~~~~~~~~~~~~~l~~~~~~rp~~~~   83 (88)
                      .++.++|+|++|++++++++ |..||.+....+...   ....+..       ...+..+.+++.+|+..+|.+| |+.+
T Consensus       178 ~~~~~~Di~slG~il~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~R-s~~e  255 (286)
T 3uqc_A          178 DANPQDDIRGIGASLYALLV-NRWPLPEAGVRSGLAPAERDTAGQPIEPADIDRDIPFQISAVAARSVQGDGGIR-SAST  255 (286)
T ss_dssp             TCCHHHHHHHHHHHHHHHHH-SEECSCCCSBCCCSEECCBCTTSCBCCHHHHCTTSCHHHHHHHHHHHCTTSSCC-CHHH
T ss_pred             CCCchhHHHHHHHHHHHHHH-CCCCCCcCCcchhhHHHHHHhccCCCChhhcccCCCHHHHHHHHHHcccCCccC-CHHH
Confidence            35678999999999999999 999997654322110   0001111       1234456778889999999999 9998


Q ss_pred             hhh
Q psy8478          84 KKR   86 (88)
Q Consensus        84 ~~~   86 (88)
                      +.+
T Consensus       256 l~~  258 (286)
T 3uqc_A          256 LLN  258 (286)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            865

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=98.22  E-value=6.3e-07  Score=48.48  Aligned_cols=82  Identities=12%  Similarity=-0.043  Sum_probs=49.4

Q ss_pred             CCcccCcchhccCCCCchhhHHHHHHH-HHHHHhcCCCCCCCCCH-HHHHHHHHcCC--CCCC----CCCChHHHHHHHh
Q psy8478           1 MTRWMAPECLVDGLFSSQSDVWAFGVL-LWEIMSLGQQPYPARTN-VDVLHYVRGGG--RLNR----PANCSHLIRSRNR   72 (88)
Q Consensus         1 ~~~~~~pe~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~i~~~~--~~~~----~~~~~~~~~~~l~   72 (88)
                      ++.|++||.+.+.. +.++|+|+++.. ..+++. |..||..... ......+....  ....    +..++..+..++.
T Consensus       240 t~~y~aPE~~~g~~-~~~~Diwsl~~~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~  317 (336)
T 2vuw_A          240 CDVSMDEDLFTGDG-DYQFDIYRLMKKENNNRWG-EYHPYSNVLWLHYLTDKMLKQMTFKTKCNTPAMKQIKRKIQEFHR  317 (336)
T ss_dssp             CCCTTCSGGGCCCS-SHHHHHHHHHHHHHTTCTT-SCCTHHHHHHHHHHHHHHHHTCCCSSCCCSHHHHHHHHHHHHHHH
T ss_pred             eecccChhhhcCCC-ccceehhhhhCCCCccccc-ccCCCcchhhhhHHHHhhhhhhccCcccchhhhhhcCHHHHHHHH
Confidence            35799999998655 779999998666 444555 7677642110 11222333211  1111    1235667777888


Q ss_pred             hCcccCCChhhhh
Q psy8478          73 LTENKAPSAVSKK   85 (88)
Q Consensus        73 ~~~~~rp~~~~~~   85 (88)
                      .++..+ |+++++
T Consensus       318 ~~L~~d-sa~e~l  329 (336)
T 2vuw_A          318 TMLNFS-SATDLL  329 (336)
T ss_dssp             HGGGSS-SHHHHH
T ss_pred             HHhccC-CHHHHH
Confidence            877765 888886

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=83.25  E-value=0.18  Score=29.61  Aligned_cols=37  Identities=16%  Similarity=0.109  Sum_probs=26.6

Q ss_pred             CcccCcchhcc--CCCCchhhHHHHHHHHHHHHhcCCCCC
Q psy8478           2 TRWMAPECLVD--GLFSSQSDVWAFGVLLWEIMSLGQQPY   39 (88)
Q Consensus         2 ~~~~~pe~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~   39 (88)
                      +.|++||.+..  ..|+...|.|+..+-..+... ...+|
T Consensus       500 ~~y~APEv~~~~~~~Y~~~~d~ws~vl~~l~~v~-~r~rY  538 (540)
T 3en9_A          500 HHEKFDEIWERFLEGYKSVYDRWEIILELMKDVE-RRARY  538 (540)
T ss_dssp             CGGGHHHHHHHHHHHHHHHCTTHHHHHHHHHHHH-TCSCC
T ss_pred             CCcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-hcccc
Confidence            56889998876  457777888988877776665 44444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	88
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	2e-17
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	5e-17
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	3e-16
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	5e-16
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	6e-16
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	2e-15
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	2e-15
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	4e-15
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	4e-15
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	5e-15
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	7e-15
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	3e-14
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	4e-14
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	6e-14
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	2e-13
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	3e-13
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	4e-13
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	4e-13
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	5e-13
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	7e-13
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	8e-13
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	9e-13
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	3e-11
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	5e-11
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	9e-11
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	6e-10
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	7e-10
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	9e-10
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	1e-09
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	2e-09
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	4e-09
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	6e-09
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	6e-09
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	6e-09
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	1e-08
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	2e-08
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	4e-08
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	4e-08
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	4e-08
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	5e-08
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	1e-07
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	2e-07
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	2e-07
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	4e-07
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	1e-06
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	2e-06
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	4e-06
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	4e-06
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	4e-06
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	4e-06
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	5e-06
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	5e-06
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	1e-05
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	1e-05
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	2e-05
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	5e-05
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	7e-05
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	2e-04
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	3e-04
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	6e-04
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	7e-04

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.7 bits (175), Expect = 2e-17
 Identities = 29/68 (42%), Positives = 39/68 (57%)

Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            +W APEC+    FSS+SDVW+FGVL+WE  S GQ+PY      +V   +  G R+  PA
Sbjct: 174 VKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMGCPA 233

Query: 62  NCSHLIRS 69
            C   +  
Sbjct: 234 GCPREMYD 241

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.8 bits (173), Expect = 5e-17
 Identities = 29/68 (42%), Positives = 41/68 (60%)

Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            +W APE L +  FS++SDVW+FG+LLWEI S G+ PYP     DV+  V  G +++ P 
Sbjct: 164 VKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKMDAPD 223

Query: 62  NCSHLIRS 69
            C   +  
Sbjct: 224 GCPPAVYE 231

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.6 bits (167), Expect = 3e-16
 Identities = 32/67 (47%), Positives = 42/67 (62%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RW  PE L+   FSS+SD+WAFGVL+WEI SLG+ PY   TN +   ++  G RL RP  
Sbjct: 166 RWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRLYRPHL 225

Query: 63  CSHLIRS 69
            S  + +
Sbjct: 226 ASEKVYT 232

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.3 bits (166), Expect = 5e-16
 Identities = 29/63 (46%), Positives = 39/63 (61%)

Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            +WMA E L    F+++SDVW+FGVLLWE+M+ G  PYP     D+  Y+  G RL +P 
Sbjct: 198 VKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPE 257

Query: 62  NCS 64
            C 
Sbjct: 258 YCP 260

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.3 bits (166), Expect = 6e-16
 Identities = 22/67 (32%), Positives = 40/67 (59%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMA E ++  +++ QSDVW++GV +WE+M+ G +PY      ++   +  G RL +P  
Sbjct: 178 KWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPI 237

Query: 63  CSHLIRS 69
           C+  +  
Sbjct: 238 CTIDVYM 244

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.2 bits (161), Expect = 2e-15
 Identities = 27/67 (40%), Positives = 41/67 (61%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W +PE      +SS+SDVW+FGVL+WE+ S G+ PY  R+N +V+  +  G RL +P  
Sbjct: 167 KWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGFRLYKPRL 226

Query: 63  CSHLIRS 69
            S  +  
Sbjct: 227 ASTHVYQ 233

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.3 bits (161), Expect = 2e-15
 Identities = 26/67 (38%), Positives = 41/67 (61%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +W APEC+    FSS+SDVW++GV +WE +S GQ+PY      +V+ ++  G R+  P  
Sbjct: 177 KWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQGKRMECPPE 236

Query: 63  CSHLIRS 69
           C   + +
Sbjct: 237 CPPELYA 243

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.4 bits (159), Expect = 4e-15
 Identities = 29/68 (42%), Positives = 43/68 (63%)

Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            +W APE +  G F+ +SDVW+FG+LL EI++ G+ PYP  TN +V+  +  G R+ RP 
Sbjct: 174 IKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPD 233

Query: 62  NCSHLIRS 69
           NC   +  
Sbjct: 234 NCPEELYQ 241

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.7 bits (159), Expect = 4e-15
 Identities = 30/68 (44%), Positives = 47/68 (69%)

Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            +WMAPE L D +++ QSDVW+FGVLLWEI +LG  PYP     ++   ++ G R+++P+
Sbjct: 201 VKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPS 260

Query: 62  NCSHLIRS 69
           NC++ +  
Sbjct: 261 NCTNELYM 268

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.5 bits (159), Expect = 5e-15
 Identities = 27/67 (40%), Positives = 39/67 (58%)

Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            +W APE  + G F+ +SDVW+FG+LL E+ + G+ PYP   N +VL  V  G R+  P 
Sbjct: 178 IKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPP 237

Query: 62  NCSHLIR 68
            C   + 
Sbjct: 238 ECPESLH 244

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.2 bits (158), Expect = 7e-15
 Identities = 27/67 (40%), Positives = 42/67 (62%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RW APE +    F+S SDVW++G+++WE+MS G++PY   TN DV++ +    RL  P +
Sbjct: 198 RWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYWDMTNQDVINAIEQDYRLPPPMD 257

Query: 63  CSHLIRS 69
           C   +  
Sbjct: 258 CPSALHQ 264

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.7 bits (154), Expect = 3e-14
 Identities = 27/66 (40%), Positives = 42/66 (63%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RW APE +    F+S SDVW+FG+++WE+M+ G++PY   +N +V+  +  G RL  P +
Sbjct: 178 RWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNHEVMKAINDGFRLPTPMD 237

Query: 63  CSHLIR 68
           C   I 
Sbjct: 238 CPSAIY 243

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.3 bits (153), Expect = 4e-14
 Identities = 29/63 (46%), Positives = 40/63 (63%)

Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            RWMA E L   ++++ SDVW++GVLLWEI+SLG  PY   T  ++   +  G RL +P 
Sbjct: 190 VRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYRLEKPL 249

Query: 62  NCS 64
           NC 
Sbjct: 250 NCD 252

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.5 bits (151), Expect = 6e-14
 Identities = 28/68 (41%), Positives = 37/68 (54%), Gaps = 1/68 (1%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYV-RGGGRLNRPA 61
            W APE L    FS  SD W FGV LWE+ + GQ+P+       +LH + + G RL RP 
Sbjct: 179 AWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDKEGERLPRPE 238

Query: 62  NCSHLIRS 69
           +C   I +
Sbjct: 239 DCPQDIYN 246

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.4 bits (148), Expect = 2e-13
 Identities = 34/67 (50%), Positives = 48/67 (71%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           RWM+PE L DG+F++ SDVW+FGV+LWEI +L +QPY   +N  VL +V  GG L++P N
Sbjct: 200 RWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDKPDN 259

Query: 63  CSHLIRS 69
           C  ++  
Sbjct: 260 CPDMLFE 266

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.4 bits (146), Expect = 3e-13
 Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
            +M+PE +    ++ +SD+W+ G LL+E +     P+ A +  ++   +R G     P  
Sbjct: 179 YYMSPEQMNRMSYNEKSDIWSLGCLLYE-LCALMPPFTAFSQKELAGKIREGKFRRIPYR 237

Query: 63  CSHLIRS 69
            S  +  
Sbjct: 238 YSDELNE 244

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (146), Expect = 4e-13
 Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 1/69 (1%)

Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLH-YVRGGGRLNRP 60
            +WMAPE L +G+++ +SDVW++G+LLWEI SLG  PYP        +  ++ G ++++P
Sbjct: 230 VKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPVDANFYKLIQNGFKMDQP 289

Query: 61  ANCSHLIRS 69
              +  I  
Sbjct: 290 FYATEEIYI 298

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 60.2 bits (145), Expect = 4e-13
 Identities = 30/63 (47%), Positives = 41/63 (65%)

Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA 61
            RWM PE +    ++++SDVWA+GV+LWEI S G QPY    + +V++YVR G  L  P 
Sbjct: 206 IRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMAHEEVIYYVRDGNILACPE 265

Query: 62  NCS 64
           NC 
Sbjct: 266 NCP 268

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.1 bits (145), Expect = 5e-13
 Identities = 29/64 (45%), Positives = 34/64 (53%)

Query: 1   MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRP 60
             +W APE L    FS +SDVWAFGVLLWEI + G  PYP      V   +    R+ RP
Sbjct: 179 PIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERP 238

Query: 61  ANCS 64
             C 
Sbjct: 239 EGCP 242

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.4 bits (143), Expect = 7e-13
 Identities = 29/67 (43%), Positives = 39/67 (58%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +WMAPE +    F+S SDVW FGV +WEI+  G +P+    N DV+  +  G RL  P N
Sbjct: 174 KWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLPMPPN 233

Query: 63  CSHLIRS 69
           C   + S
Sbjct: 234 CPPTLYS 240

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.6 bits (144), Expect = 8e-13
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 3/69 (4%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG--RLNRP 60
            WMAPE +    +  + D+W+ G++  E++  G+ PY     +  L+ +   G   L  P
Sbjct: 181 YWMAPEVVTRKAYGPKVDIWSLGIMAIEMIE-GEPPYLNENPLRALYLIATNGTPELQNP 239

Query: 61  ANCSHLIRS 69
              S + R 
Sbjct: 240 EKLSAIFRD 248

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.2 bits (143), Expect = 9e-13
 Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 9/75 (12%)

Query: 3   RWMAPECLV---DGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRL-- 57
            WMAPE +       +S QSDV+AFG++L+E+M+ GQ PY    N D + ++ G G L  
Sbjct: 171 LWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMT-GQLPYSNINNRDQIIFMVGRGYLSP 229

Query: 58  ---NRPANCSHLIRS 69
                 +NC   ++ 
Sbjct: 230 DLSKVRSNCPKAMKR 244

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.4 bits (133), Expect = 3e-11
 Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 4/89 (4%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDV---LHYVRGGGRLNR 59
            +M+PE L    +S QSD+W+ G+ L E+   G+ P P     ++         G     
Sbjct: 168 SYMSPERLQGTHYSVQSDIWSMGLSLVEMAV-GRYPIPPPDAKELELMFGCQVEGDAAET 226

Query: 60  PANCSHLIRSRNRLTENKAPSAVSKKRIH 88
           P       R  +    +  P     + + 
Sbjct: 227 PPRPRTPGRPLSSYGMDSRPPMAIFELLD 255

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.2 bits (130), Expect = 5e-11
 Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 2/67 (2%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
            ++ PE +   +   + D+W+ GVL +E +  G+ P+ A T  +    +        P  
Sbjct: 169 DYLPPEMIEGRMHDEKVDLWSLGVLCYEFLV-GKPPFEANTYQETYKRIS-RVEFTFPDF 226

Query: 63  CSHLIRS 69
            +   R 
Sbjct: 227 VTEGARD 233

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (129), Expect = 9e-11
 Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 6/89 (6%)

Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPANC 63
           ++APE L+   ++   D W+FGVLL+E++  GQ P+  +   ++ H +R       P   
Sbjct: 169 YIAPEILLGQKYNHSVDWWSFGVLLYEMLI-GQSPFHGQDEEELFHSIR-MDNPFYPRWL 226

Query: 64  S----HLIRSRNRLTENKAPSAVSKKRIH 88
                 L+         K        R H
Sbjct: 227 EKEAKDLLVKLFVREPEKRLGVRGDIRQH 255

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (123), Expect = 6e-10
 Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 8/76 (10%)

Query: 1   MTRWMAPECLV-----DGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG 55
              WMAPE ++     D  +  ++DVW+ G+ L E+    + P+     + VL  +    
Sbjct: 173 TPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAE-IEPPHHELNPMRVLLKIAKSE 231

Query: 56  --RLNRPANCSHLIRS 69
              L +P+  S   + 
Sbjct: 232 PPTLAQPSRWSSNFKD 247

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 51.2 bits (122), Expect = 7e-10
 Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGG 54
            + APE          +D+W+ GVL + ++S G  P+    + + L  V+  
Sbjct: 190 EFAAPEVAEGKPVGYYTDMWSVGVLSYILLS-GLSPFGGENDDETLRNVKSC 240

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.8 bits (121), Expect = 9e-10
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLH 49
            +MAPE   +  +    DV+AFG+ + E+ +  + PY    N   ++
Sbjct: 178 EFMAPEMY-EEKYDESVDVYAFGMCMLEMAT-SEYPYSECQNAAQIY 222

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (121), Expect = 1e-09
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG---RLNR 59
            ++APE +       ++D+W+ GV+ + ++S G  P+   T  + L  V           
Sbjct: 181 EFVAPEIVNYEPLGLEADMWSIGVITYILLS-GASPFLGDTKQETLANVSAVNYEFEDEY 239

Query: 60  PANCSHLIRS 69
            +N S L + 
Sbjct: 240 FSNTSALAKD 249

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (120), Expect = 2e-09
 Identities = 12/64 (18%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 1   MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRP 60
             ++++PE L +      SD+WA G +++++++ G  P+ A     +   +      + P
Sbjct: 173 TAQYVSPELLTEKSACKSSDLWALGCIIYQLVA-GLPPFRAGNEYLIFQKII-KLEYDFP 230

Query: 61  ANCS 64
               
Sbjct: 231 EKFF 234

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (117), Expect = 4e-09
 Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 1/64 (1%)

Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLH-YVRGGGRLNRP 60
            +WMAPE + + +++ +SDVW++G+ LWE+ SLG  PYP        +  ++ G R+  P
Sbjct: 211 VKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSP 270

Query: 61  ANCS 64
            +  
Sbjct: 271 EHAP 274

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (115), Expect = 6e-09
 Identities = 14/82 (17%), Positives = 34/82 (41%), Gaps = 1/82 (1%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
            + APE L+   +++  D+W+ G +  E+    +  +   ++VD L  +     L    +
Sbjct: 180 WYRAPEVLLQSSYATPVDLWSVGCIFAEMFR-RKPLFRGSSDVDQLGKILDVIGLPGEED 238

Query: 63  CSHLIRSRNRLTENKAPSAVSK 84
               +    +   +K+   + K
Sbjct: 239 WPRDVALPRQAFHSKSAQPIEK 260

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.8 bits (116), Expect = 6e-09
 Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 5/71 (7%)

Query: 3   RWMAPECLV---DGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYV-RGGGRLN 58
            WMAPE ++   +G +  + DVW+ G+   E+    + P      +  L+++ +      
Sbjct: 176 YWMAPEVILAMDEGQYDGKVDVWSLGITCIELAE-RKPPLFNMNAMSALYHIAQNESPAL 234

Query: 59  RPANCSHLIRS 69
           +  + S   R+
Sbjct: 235 QSGHWSEYFRN 245

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 48.5 bits (115), Expect = 6e-09
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 1   MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGG 54
              + APE +        +D+WA GVL + ++S G  P+    +++ L  V+  
Sbjct: 191 TAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLS-GLSPFAGEDDLETLQNVKRC 243

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (113), Expect = 1e-08
 Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 2   TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGG 54
             + APE     + S+ +D+W+ G L++ ++S G  P+ A TN  ++  +   
Sbjct: 167 PEYYAPEVHQHDVVSTATDMWSLGTLVYVLLS-GINPFLAETNQQIIENIMNA 218

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 47.0 bits (111), Expect = 2e-08
 Identities = 14/64 (21%), Positives = 32/64 (50%), Gaps = 1/64 (1%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           ++++PE        ++SDV++ G +L+E+++ G+ P+   + V V +       +   A 
Sbjct: 179 QYLSPEQARGDSVDARSDVYSLGCVLYEVLT-GEPPFTGDSPVSVAYQHVREDPIPPSAR 237

Query: 63  CSHL 66
              L
Sbjct: 238 HEGL 241

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.2 bits (109), Expect = 4e-08
 Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYV-RGGGRLNRP 60
           ++APE L    +S   D W+ GV+ + ++  G  P+    +  +   + +     + P
Sbjct: 175 YVAPEVLAQKPYSKAVDCWSIGVIAYILLC-GYPPFYDENDAKLFEQILKAEYEFDSP 231

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (109), Expect = 4e-08
 Identities = 14/70 (20%), Positives = 30/70 (42%), Gaps = 4/70 (5%)

Query: 3   RWMAPECLVDGLFSSQ-SDVWAFGVLLWEIMSLGQQPYPARTNVDVL--HYVRGGGRLNR 59
            ++APE L    F ++  DVW+ G++L  +++ G+ P+   ++       +      LN 
Sbjct: 170 PYVAPELLKRREFHAEPVDVWSCGIVLTAMLA-GELPWDQPSDSCQEYSDWKEKKTYLNP 228

Query: 60  PANCSHLIRS 69
                    +
Sbjct: 229 WKKIDSAPLA 238

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.2 bits (109), Expect = 4e-08
 Identities = 13/69 (18%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 1   MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRP 60
              ++APE +    ++   D W+FG+L++E+++ G  P+     +     +     L  P
Sbjct: 164 TPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLA-GYTPFYDSNTMKTYEKIL-NAELRFP 221

Query: 61  ANCSHLIRS 69
              +  ++ 
Sbjct: 222 PFFNEDVKD 230

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (108), Expect = 5e-08
 Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 1/63 (1%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVD-VLHYVRGGGRLNRPA 61
           +WMAPE + D +++ QSDVW+FGVLLWEI SLG  PYP     +     ++ G R+  P 
Sbjct: 201 KWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPD 260

Query: 62  NCS 64
             +
Sbjct: 261 YTT 263

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 45.2 bits (106), Expect = 1e-07
 Identities = 9/58 (15%), Positives = 18/58 (31%), Gaps = 1/58 (1%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRP 60
           R+M+    +    S + D+ A G +    +  G  P+               G   + 
Sbjct: 178 RYMSINTHLGREQSRRDDLEALGHVFMYFLR-GSLPWQGLKAATNKQKYERIGEKKQS 234

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (104), Expect = 2e-07
 Identities = 12/50 (24%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 1   MTRWMAPECLV-DGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLH 49
              + APE L+    +S+  D+W+ G +  E+++  +  +P  + +D L 
Sbjct: 165 TLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVT-RRALFPGDSEIDQLF 213

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (104), Expect = 2e-07
 Identities = 11/58 (18%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRP 60
            ++APE L    +    D+W+ GV+++  +  G  P+ +   + +   ++   R+ + 
Sbjct: 178 YYVAPEVLGPEKYDKSCDMWSLGVIMYI-LLCGYPPFYSNHGLAISPGMKTRIRMGQY 234

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 43.5 bits (102), Expect = 4e-07
 Identities = 9/52 (17%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGG 54
                       +  + D+W+ GV+++ +++ G  P+  R  + +L  +  G
Sbjct: 180 IIECSMNDNHPGYGKEVDMWSTGVIMYTLLA-GSPPFWHRKQMLMLRMIMSG 230

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.5 bits (99), Expect = 1e-06
 Identities = 8/50 (16%), Positives = 17/50 (34%), Gaps = 1/50 (2%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVR 52
           R+ +    +    S + D+ + G +L    +LG  P+             
Sbjct: 178 RYASINTHLGIEQSRRDDLESLGYVLMY-FNLGSLPWQGLKAATKRQKYE 226

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 2e-06
 Identities = 16/89 (17%), Positives = 34/89 (38%), Gaps = 2/89 (2%)

Query: 1   MTRWMAPECLVDG--LFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLN 58
           +T W  P  ++ G  L+S+  D+W+ G +  E+ + G+  +P     D L  +       
Sbjct: 163 VTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTP 222

Query: 59  RPANCSHLIRSRNRLTENKAPSAVSKKRI 87
                  + +  +       P+  S   +
Sbjct: 223 TEEQWPSMTKLPDYKPYPMYPATTSLVNV 251

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.9 bits (95), Expect = 4e-06
 Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 2/64 (3%)

Query: 1   MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRP 60
               +APE ++   ++   D WA GVL++E+ + G  P+ A   + +   +   G++  P
Sbjct: 201 TPEALAPEIILSKGYNKAVDWWALGVLIYEMAA-GYPPFFADQPIQIYEKIV-SGKVRFP 258

Query: 61  ANCS 64
           ++ S
Sbjct: 259 SHFS 262

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (95), Expect = 4e-06
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 5/67 (7%)

Query: 4   WMAPECLVDGLFSSQS-DVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           +  PE +    +  +S  VW+ G+LL++++  G  P+     +          R    + 
Sbjct: 175 YSPPEWIRYHRYHGRSAAVWSLGILLYDMVC-GDIPFEHDEEIIRGQVFF---RQRVSSE 230

Query: 63  CSHLIRS 69
           C HLIR 
Sbjct: 231 CQHLIRW 237

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (95), Expect = 4e-06
 Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 2/67 (2%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
            ++APE L D  +    D W  GV+++E+M  G+ P+  + +  +   +     +  P  
Sbjct: 170 EYLAPEVLEDNDYGRAVDWWGLGVVMYEMMC-GRLPFYNQDHERLFELIL-MEEIRFPRT 227

Query: 63  CSHLIRS 69
            S   +S
Sbjct: 228 LSPEAKS 234

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (94), Expect = 4e-06
 Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 2/77 (2%)

Query: 4   WMAPECLVD-GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
           + APE L    ++    D+WA G +L E++       P  +++D L  +           
Sbjct: 166 YRAPELLFGARMYGVGVDMWAVGCILAELLL-RVPFLPGDSDLDQLTRIFETLGTPTEEQ 224

Query: 63  CSHLIRSRNRLTENKAP 79
              +    + +T    P
Sbjct: 225 WPDMCSLPDYVTFKSFP 241

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.5 bits (94), Expect = 5e-06
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 4/69 (5%)

Query: 4   WMAPECLVDGL-FSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRG--GGRLNRP 60
           +MAPE L  G+ + S +D ++ G +L++++  G  P+      D     R      +  P
Sbjct: 171 YMAPEVLQKGVAYDSSADWFSLGCMLFKLLR-GHSPFRQHKTKDKHEIDRMTLTMAVELP 229

Query: 61  ANCSHLIRS 69
            + S  +RS
Sbjct: 230 DSFSPELRS 238

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 40.3 bits (93), Expect = 5e-06
 Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 1   MTRWMAPECLV-DGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYV 51
              + AP+ L+    +S+  D+W+ G +  E+++ G   +P  +  D L  +
Sbjct: 163 TLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVN-GTPLFPGVSEADQLMRI 213

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (91), Expect = 1e-05
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 4   WMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYV 51
                      ++S  DVW+ G +L E++  GQ  +P  + VD L  +
Sbjct: 189 RAPELIFGATDYTSSIDVWSAGCVLAELLL-GQPIFPGDSGVDQLVEI 235

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (90), Expect = 1e-05
 Identities = 16/80 (20%), Positives = 36/80 (45%), Gaps = 2/80 (2%)

Query: 1   MTRWMAPECLVDGLFSSQS-DVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNR 59
              + APE +++    ++S D+W+ G +L   M   +  +P +  +D L+++ G      
Sbjct: 175 TRWYRAPEIMLNSKGYTKSIDIWSVGCILA-EMLSNRPIFPGKHYLDQLNHILGILGSPS 233

Query: 60  PANCSHLIRSRNRLTENKAP 79
             + + +I  + R      P
Sbjct: 234 QEDLNCIINLKARNYLLSLP 253

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (90), Expect = 2e-05
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 6/37 (16%)

Query: 3   RWMAPECLVDGL------FSSQSDVWAFGVLLWEIMS 33
           R+MAPE L D +         ++D++A G++ WEI  
Sbjct: 177 RYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIAR 213

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 5e-05
 Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 6/74 (8%)

Query: 1   MTRWMAPECLVDGL--FSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGG---G 55
              +MAP+ +  G        D W+ GVL++E+++ G  P+      +    +       
Sbjct: 193 TIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLT-GASPFTVDGEKNSQAEISRRILKS 251

Query: 56  RLNRPANCSHLIRS 69
               P   S L + 
Sbjct: 252 EPPYPQEMSALAKD 265

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 7e-05
 Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 3/52 (5%)

Query: 2   TRWMAPECLVDG--LFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYV 51
           T W  P  L+ G   +    D+W  G ++ E M          T    L  +
Sbjct: 184 TLWYRPPELLLGERDYGPPIDLWGAGCIMAE-MWTRSPIMQGNTEQHQLALI 234

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 2e-04
 Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 1/75 (1%)

Query: 3   RWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN 62
            + APE ++   +    D+W+ G ++ E M   +  +P R  +D  + V        P  
Sbjct: 183 YYRAPEVILGMGYKENVDIWSVGCIMGE-MVRHKILFPGRDYIDQWNKVIEQLGTPCPEF 241

Query: 63  CSHLIRSRNRLTENK 77
              L  +     EN+
Sbjct: 242 MKKLQPTVRNYVENR 256

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (81), Expect = 3e-04
 Identities = 12/52 (23%), Positives = 31/52 (59%), Gaps = 2/52 (3%)

Query: 1   MTRWMAPECLVDGLFSSQS-DVWAFGVLLWEIMSLGQQPYPARTNVDVLHYV 51
              + APE +++ +  +Q+ D+W+ G ++ E+++ G+  +P   ++D L  +
Sbjct: 181 TRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLT-GRTLFPGTDHIDQLKLI 231

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.4 bits (78), Expect = 6e-04
 Identities = 13/85 (15%), Positives = 33/85 (38%), Gaps = 2/85 (2%)

Query: 1   MTRWMAPECLVDGL-FSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNR 59
              + APE +++ + ++   D+W+ G ++ E+++ G+  +    ++D L  +        
Sbjct: 181 TRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMIT-GKTLFKGSDHLDQLKEIMKVTGTPP 239

Query: 60  PANCSHLIRSRNRLTENKAPSAVSK 84
                 L     +      P    K
Sbjct: 240 AEFVQRLQSDEAKNYMKGLPELEKK 264

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.2 bits (77), Expect = 7e-04
 Identities = 8/44 (18%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 1   MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTN 44
              + +PE L+   +   +D+W+   L++E+++ G   +     
Sbjct: 192 TREYRSPEVLLGAPWGCGADIWSTACLIFELIT-GDFLFEPDEG 234

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	88
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	99.86
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	99.85
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	99.84
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	99.84
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	99.83
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	99.83
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	99.83
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	99.82
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	99.82
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	99.82
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	99.82
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	99.82
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	99.82
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	99.82
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	99.81
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	99.81
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	99.8
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	99.8
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	99.8
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.8
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	99.79
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	99.79
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	99.79
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	99.79
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	99.79
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	99.79
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	99.79
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	99.79
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	99.78
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	99.78
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	99.78
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	99.77
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	99.77
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	99.77
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	99.77
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	99.76
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	99.75
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	99.75
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	99.75
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	99.73
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	99.72
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	99.72
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	99.71
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	99.7
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	99.7
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	99.68
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	99.68
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	99.68
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	99.67
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	99.66
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	99.66
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	99.66
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	99.65
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	99.61
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	99.59
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	99.56
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	99.53
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	99.52
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	99.51
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	99.51
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	99.46
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	99.45

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2.2e-21  Score=101.02  Aligned_cols=85  Identities=22%  Similarity=0.393  Sum_probs=72.4

Q ss_pred             CCcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCC----ChHHHHHHHhhCcc
Q psy8478           1 MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN----CSHLIRSRNRLTEN   76 (88)
Q Consensus         1 ~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~l~~~~~   76 (88)
                      ++.|+|||.+....|+.++|+||+|++++++++ |..||.+.+..++...+..+.....|..    +.+++..||..+|.
T Consensus       177 t~~Y~APE~l~~~~~~~~~DIwSlGvilyel~t-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~s~~l~~li~~~L~~dp~  255 (269)
T d2java1         177 TPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCA-LMPPFTAFSQKELAGKIREGKFRRIPYRYSDELNEIITRMLNLKDY  255 (269)
T ss_dssp             CCSCCCHHHHTTCCCCHHHHHHHHHHHHHHHHH-SSCSCCCSSHHHHHHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGG
T ss_pred             CcccCCHHHHcCCCCChHHHHHhhCHHHHHHhh-CCCCCCCCCHHHHHHHHHcCCCCCCCcccCHHHHHHHHHHcCCChh
Confidence            467999999988889999999999999999999 9999998888888888877655444444    45677788899999


Q ss_pred             cCCChhhhhh
Q psy8478          77 KAPSAVSKKR   86 (88)
Q Consensus        77 ~rp~~~~~~~   86 (88)
                      +|||+.++++
T Consensus       256 ~Rps~~ell~  265 (269)
T d2java1         256 HRPSVEEILE  265 (269)
T ss_dssp             GSCCHHHHHT
T ss_pred             HCcCHHHHHh
Confidence            9999999875

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.8e-21  Score=101.04  Aligned_cols=83  Identities=18%  Similarity=0.377  Sum_probs=70.6

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCC----CCCChHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNR----PANCSHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~l~~~~~~   77 (88)
                      +.|+|||.+.+..|+.++|+||+|++++++++ |..||.+.+..+....+..+. ...    +..+.+++.+||..+|.+
T Consensus       168 ~~Y~APE~~~~~~~~~~~DiwSlGvilyell~-G~~Pf~~~~~~~~~~~i~~~~-~~~p~~~s~~~~~li~~~L~~dp~~  245 (263)
T d2j4za1         168 LDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLV-GKPPFEANTYQETYKRISRVE-FTFPDFVTEGARDLISRLLKHNPSQ  245 (263)
T ss_dssp             GGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHH-SSCTTCCSSHHHHHHHHHTTC-CCCCTTSCHHHHHHHHHHTCSSGGG
T ss_pred             CcccCHHHHcCCCCCchhhhhhHhHHHHHHhc-CCCCCCCCCHHHHHHHHHcCC-CCCCccCCHHHHHHHHHHccCCHhH
Confidence            57999999998889999999999999999999 999999888888888876553 223    344566888899999999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      |||++++++
T Consensus       246 R~t~~eil~  254 (263)
T d2j4za1         246 RPMLREVLE  254 (263)
T ss_dssp             SCCHHHHHT
T ss_pred             CcCHHHHHc
Confidence            999999875

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=4e-21  Score=100.36  Aligned_cols=85  Identities=36%  Similarity=0.712  Sum_probs=72.2

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCChH----HHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPANCSH----LIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~----~~~~~l~~~~~~   77 (88)
                      +.|+|||.+....++.++|+||+|+++|++++.|..||.+....++...+..+.+++.|..+++    ++.+|+..+|.+
T Consensus       174 ~~y~APE~l~~~~~~~~sDiwS~Gv~l~ellt~g~~Pf~~~~~~~~~~~i~~~~~~~~p~~~~~~~~~li~~cl~~dp~~  253 (277)
T d1xbba_         174 VKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMGCPAGCPREMYDLMNLCWTYDVEN  253 (277)
T ss_dssp             GGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSTTT
T ss_pred             ceecCchhhcCCCCCchhhhccchhhhhHHhhCCCCCCCCCCHHHHHHHHHcCCCCCCCcccCHHHHHHHHHHcCCCHhH
Confidence            5799999999888999999999999999998768999998888888888888877776666554    566677788999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||++.++.+
T Consensus       254 RPs~~~i~~  262 (277)
T d1xbba_         254 RPGFAAVEL  262 (277)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHHH
Confidence            999998854

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=8.8e-21  Score=99.39  Aligned_cols=85  Identities=33%  Similarity=0.726  Sum_probs=71.7

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCChH----HHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPANCSH----LIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~----~~~~~l~~~~~~   77 (88)
                      +.|+|||.+....++.++|+||+|+++|++++.|..||.+....++...+..+.+++.|..+++    ++..|+..+|.+
T Consensus       176 ~~y~aPE~~~~~~~~~ksDVwS~Gv~l~E~lt~G~~Pf~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~~p~~  255 (285)
T d1u59a_         176 LKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQGKRMECPPECPPELYALMSDCWIYKWED  255 (285)
T ss_dssp             GGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTHHHHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGG
T ss_pred             ccccChHHHhCCCCCccchhhcchHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCcCCHHHHHHHHHHcCCCHhH
Confidence            5799999998888999999999999999998768999998888888888888877777777665    455566667899


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||++.++.+
T Consensus       256 RPs~~~i~~  264 (285)
T d1u59a_         256 RPDFLTVEQ  264 (285)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHHH
Confidence            999998865

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=1.7e-20  Score=98.88  Aligned_cols=85  Identities=35%  Similarity=0.675  Sum_probs=72.3

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCCh----HHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPANCS----HLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~~~~~~l~~~~~~   77 (88)
                      +.|+|||.+....++.++|+||+|++++++++.|..||.+....++...+..+.+++.+..++    +++..|+..+|.+
T Consensus       197 ~~y~aPE~~~~~~~~~~sDvwS~Gvvl~el~t~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~~P~~  276 (299)
T d1jpaa_         197 IRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYWDMTNQDVINAIEQDYRLPPPMDCPSALHQLMLDCWQKDRNH  276 (299)
T ss_dssp             GGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSTTT
T ss_pred             ccccCHHHHhcCCCCcccccccchHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCccchHHHHHHHHHHcCCCHhH
Confidence            469999999888899999999999999999976899999888888888888877766666554    4566777888999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||++.++.+
T Consensus       277 RPs~~ei~~  285 (299)
T d1jpaa_         277 RPKFGQIVN  285 (299)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHHH
Confidence            999999865

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.4e-20  Score=98.10  Aligned_cols=85  Identities=36%  Similarity=0.689  Sum_probs=72.5

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCCh----HHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPANCS----HLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~~~~~~l~~~~~~   77 (88)
                      +.|+|||.+....++.++|+||+|++++++++.|..||.+....++...+..+.+++.|..++    +++.+|+..+|.+
T Consensus       173 ~~y~apE~l~~~~~~~~~DiwSlGvil~e~lt~g~~P~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~li~~cl~~dp~~  252 (273)
T d1mp8a_         173 IKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSR  252 (273)
T ss_dssp             GGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGG
T ss_pred             cccchhhHhccCCCCCccccccchHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCCHhH
Confidence            579999999988999999999999999999876899999888888888888877666666554    5666788888999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      |||+.++.+
T Consensus       253 Rps~~ei~~  261 (273)
T d1mp8a_         253 RPRFTELKA  261 (273)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHHH
Confidence            999999865

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=3.1e-20  Score=96.35  Aligned_cols=85  Identities=34%  Similarity=0.656  Sum_probs=71.3

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCCh----HHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPANCS----HLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~~~~~~l~~~~~~   77 (88)
                      +.|+|||.+....|+.++|+||+|++++++++.|.+++......++...+..+.+...|..++    +++..|+..+|++
T Consensus       166 ~~y~aPE~l~~~~~~~k~DVwS~Gvil~el~t~~~~~~~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~~p~~  245 (263)
T d1sm2a_         166 VKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGFRLYKPRLASTHVYQIMNHCWKERPED  245 (263)
T ss_dssp             TTSCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSCCHHHHHHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGG
T ss_pred             cccCChHHhcCCCCCchhhhcchHHHHHHHHHCCCCCCCCCCHHHHHHHHHhcCCCCCccccCHHHHHHHHHHccCCHhH
Confidence            579999999988999999999999999999986678888778888888888777666666554    4556778888999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||+++++.+
T Consensus       246 Rps~~~il~  254 (263)
T d1sm2a_         246 RPAFSRLLR  254 (263)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHHH
Confidence            999999865

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=5.4e-21  Score=100.32  Aligned_cols=83  Identities=18%  Similarity=0.385  Sum_probs=69.1

Q ss_pred             CCcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCC----ChHHHHHHHhhCcc
Q psy8478           1 MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPAN----CSHLIRSRNRLTEN   76 (88)
Q Consensus         1 ~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~l~~~~~   76 (88)
                      ++.|+|||.+.+..|+.++|+||+|++++++++ |..||.+.+..++...+..+. ...|..    +.+++.+||..+|.
T Consensus       173 T~~Y~APE~~~~~~~~~~~DiwSlGvilyell~-g~~Pf~~~~~~~~~~~i~~~~-~~~p~~~s~~~~~li~~~L~~dP~  250 (288)
T d1uu3a_         173 TAQYVSPELLTEKSACKSSDLWALGCIIYQLVA-GLPPFRAGNEYLIFQKIIKLE-YDFPEKFFPKARDLVEKLLVLDAT  250 (288)
T ss_dssp             CGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHH-SSCSSCCSSHHHHHHHHHTTC-CCCCTTCCHHHHHHHHTTSCSSGG
T ss_pred             CccccCceeeccCCCCcccceehhhHHHHHHhh-CCCCCCCcCHHHHHHHHHcCC-CCCCccCCHHHHHHHHHHccCCHh
Confidence            467999999998899999999999999999999 999999888888888887653 333444    45577778888899


Q ss_pred             cCCChhhhh
Q psy8478          77 KAPSAVSKK   85 (88)
Q Consensus        77 ~rp~~~~~~   85 (88)
                      +|||++++.
T Consensus       251 ~R~t~~e~~  259 (288)
T d1uu3a_         251 KRLGCEEME  259 (288)
T ss_dssp             GSTTSGGGT
T ss_pred             HCcCHHHHc
Confidence            999999863

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=4.8e-20  Score=95.43  Aligned_cols=85  Identities=40%  Similarity=0.651  Sum_probs=72.1

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCCh----HHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPANCS----HLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~~~~~~l~~~~~~   77 (88)
                      +.|+|||.+....++.++|+|++|++++++++.|..||.+....++...+..+.+.+.|..++    +++..|+..+|++
T Consensus       165 ~~y~aPE~~~~~~~~~ksDiwS~G~~l~el~t~g~~Pf~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~dP~~  244 (258)
T d1k2pa_         165 VRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRLYRPHLASEKVYTIMYSCWHEKADE  244 (258)
T ss_dssp             GGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGG
T ss_pred             CCcCCcHHhcCCCCCcceeecccchhhHhHHhcCCCCCCCCCHHHHHHHHHhCCCCCCcccccHHHHHHHHHHccCCHhH
Confidence            469999999988999999999999999999976899999888888888898887777776666    4555666677899


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      |||++++.+
T Consensus       245 RPt~~eil~  253 (258)
T d1k2pa_         245 RPTFKILLS  253 (258)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHHH
Confidence            999999864

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.82  E-value=1.5e-20  Score=99.31  Aligned_cols=85  Identities=16%  Similarity=0.323  Sum_probs=70.6

Q ss_pred             CCcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC---C----CCCCChHHHHHHHhh
Q psy8478           1 MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRL---N----RPANCSHLIRSRNRL   73 (88)
Q Consensus         1 ~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~----~~~~~~~~~~~~l~~   73 (88)
                      ++.|+|||.+.+..|+.++|+||+|++++++++ |..||.+....+....+..+...   +    .+..+.+++..||..
T Consensus       172 T~~y~APE~~~~~~~~~~~DiwSlGvilyell~-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~  250 (307)
T d1a06a_         172 TPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLC-GYPPFYDENDAKLFEQILKAEYEFDSPYWDDISDSAKDFIRHLMEK  250 (307)
T ss_dssp             -CTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHH-SSCSCCCSSHHHHHHHHHTTCCCCCTTTTTTSCHHHHHHHHHHSCS
T ss_pred             CccccCcHHHcCCCCCcHHHhhhhhHHHHHHHh-CCCCCCCCCHHHHHHHHhccCCCCCCccccCCCHHHHHHHHHHccC
Confidence            467999999998889999999999999999999 99999988888888887655322   1    223456788899999


Q ss_pred             CcccCCChhhhhh
Q psy8478          74 TENKAPSAVSKKR   86 (88)
Q Consensus        74 ~~~~rp~~~~~~~   86 (88)
                      +|.+|||++++++
T Consensus       251 dP~~R~s~~eil~  263 (307)
T d1a06a_         251 DPEKRFTCEQALQ  263 (307)
T ss_dssp             SGGGSCCHHHHHH
T ss_pred             CHhHCcCHHHHhc
Confidence            9999999999875

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.82  E-value=5.5e-20  Score=96.89  Aligned_cols=86  Identities=43%  Similarity=0.788  Sum_probs=72.7

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCCh----HHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPANCS----HLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~~~~~~l~~~~~~   77 (88)
                      +.|+|||.+....|+.++|+||+|++++++++.+..||.+.+..++...+..+..++.|..++    +++..|++.+|.+
T Consensus       206 ~~y~aPE~~~~~~~t~ksDVwS~Gvvl~ell~~~~~p~~~~~~~e~~~~v~~~~~~~~p~~~~~~~~~li~~cl~~~P~~  285 (301)
T d1lufa_         206 IRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMAHEEVIYYVRDGNILACPENCPLELYNLMRLCWSKLPAD  285 (301)
T ss_dssp             GGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGG
T ss_pred             cCcCCHHHHccCCCChhhhhccchhhHHHHHccCCCCCCCCCHHHHHHHHHcCCCCCCCccchHHHHHHHHHHcCCChhH
Confidence            579999999988999999999999999999984467898889999999998887766666554    5666788888999


Q ss_pred             CCChhhhhhc
Q psy8478          78 APSAVSKKRI   87 (88)
Q Consensus        78 rp~~~~~~~~   87 (88)
                      |||+.++.+.
T Consensus       286 RPt~~ev~~~  295 (301)
T d1lufa_         286 RPSFCSIHRI  295 (301)
T ss_dssp             SCCHHHHHHH
T ss_pred             CcCHHHHHHH
Confidence            9999998653

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=7.4e-20  Score=95.73  Aligned_cols=85  Identities=33%  Similarity=0.699  Sum_probs=70.4

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCCh----HHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPANCS----HLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~~~~~~l~~~~~~   77 (88)
                      +.|+|||.+....++.++|+||+|+++|++++.+.+++......++...+..+.+++.+..++    +++..|+..+|++
T Consensus       177 ~~Y~APE~l~~~~~~~~sDI~S~Gvil~el~t~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~~p~~  256 (283)
T d1mqba_         177 IRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNHEVMKAINDGFRLPTPMDCPSAIYQLMMQCWQQERAR  256 (283)
T ss_dssp             GGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTTCCCCCCTTCBHHHHHHHHHHTCSSTTT
T ss_pred             ccccCHHHHccCCCCCcccccccHHHHHHHHhCCCCccccCCHHHHHHHHhccCCCCCchhhHHHHHHHHHHHCcCCHhH
Confidence            469999999988999999999999999999985666777777888888888877777666655    5566677788999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||++.++.+
T Consensus       257 RPt~~eil~  265 (283)
T d1mqba_         257 RPKFADIVS  265 (283)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHHH
Confidence            999999865

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=2.8e-20  Score=98.64  Aligned_cols=85  Identities=27%  Similarity=0.640  Sum_probs=72.0

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCCh----HHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPANCS----HLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~~~~~~l~~~~~~   77 (88)
                      +.|+|||.+.+..|+.++|+||+|++++++++.|..||.+....++...+..+.+++.|..++    +++..|+..+|.+
T Consensus       177 ~~y~APE~l~~~~~~~~sDvwS~Gvil~el~t~g~~p~~~~~~~~~~~~i~~~~~~~~p~~~~~~~~~li~~cl~~dP~~  256 (317)
T d1xkka_         177 IKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPICTIDVYMIMVKCWMIDADS  256 (317)
T ss_dssp             TTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCGGGHHHHHHHTCCCCCCTTBCHHHHHHHHHHTCSSGGG
T ss_pred             ccccChHHHhcCCCChhhhhhhHHHHHHHHHHCCCCCCCCCCHHHHHHHHHcCCCCCCCcccCHHHHHHHHHhCCCChhh
Confidence            579999999988999999999999999999986889998888777888887777776666554    5666788888999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      |||+.++.+
T Consensus       257 RPs~~eil~  265 (317)
T d1xkka_         257 RPKFRELII  265 (317)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHHH
Confidence            999998854

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=4.2e-20  Score=96.25  Aligned_cols=85  Identities=38%  Similarity=0.712  Sum_probs=70.8

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCCh----HHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPANCS----HLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~~~~~~l~~~~~~   77 (88)
                      +.|+|||.+....++.++|+||+|++++++++.+.+++......+....+..+.++..|..++    +++.+|+..+|.+
T Consensus       174 ~~y~APE~~~~~~~~~~sDvwS~Gvvl~ellt~~~~~~~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~~P~~  253 (272)
T d1qpca_         174 IKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPED  253 (272)
T ss_dssp             TTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGG
T ss_pred             ccccChHHHhCCCCCchhhhhhhHHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCCCCcccChHHHHHHHHHHcCCCHhH
Confidence            579999999888899999999999999999985667777778888888888777666666554    5666778888999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      |||+.++.+
T Consensus       254 Rpt~~ei~~  262 (272)
T d1qpca_         254 RPTFDYLRS  262 (272)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHHH
Confidence            999999865

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=2.6e-20  Score=97.91  Aligned_cols=85  Identities=21%  Similarity=0.440  Sum_probs=68.8

Q ss_pred             CCcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC--CC----CCCChHHHHHHHhhC
Q psy8478           1 MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRL--NR----PANCSHLIRSRNRLT   74 (88)
Q Consensus         1 ~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~----~~~~~~~~~~~l~~~   74 (88)
                      ++.|+|||.+.+..|+.++|+|++|++++++++ |..||.+.+..+....+..+..+  ..    +..+.+++.+||..+
T Consensus       179 t~~Y~aPE~~~~~~~~~~~DiwSlGvilyemlt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~d  257 (293)
T d1yhwa1         179 TPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIE-GEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLDMD  257 (293)
T ss_dssp             CGGGCCHHHHSSSCBCTHHHHHHHHHHHHHHHH-SSCTTTTSCHHHHHHHHHHHCSCCCSSGGGSCHHHHHHHHHHTCSS
T ss_pred             CCCccChhhhcCCCCCchhceehHhHHHHHHhh-CCCCCCCCCHHHHHHHHHhCCCCCCCCcccCCHHHHHHHHHHccCC
Confidence            367999999998889999999999999999999 99999988877776666433222  22    234566788899999


Q ss_pred             cccCCChhhhhh
Q psy8478          75 ENKAPSAVSKKR   86 (88)
Q Consensus        75 ~~~rp~~~~~~~   86 (88)
                      |.+|||+.++++
T Consensus       258 P~~R~s~~eil~  269 (293)
T d1yhwa1         258 VEKRGSAKELLQ  269 (293)
T ss_dssp             TTTSCCHHHHTT
T ss_pred             hhHCcCHHHHhc
Confidence            999999999864

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=7e-20  Score=96.46  Aligned_cols=86  Identities=37%  Similarity=0.816  Sum_probs=73.1

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCC----hHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPANC----SHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~----~~~~~~~l~~~~~~   77 (88)
                      +.|++||.+....|+.++|+|++|++++++++.|..||.+....++...+..+.+++.|..+    .+++..|+..+|++
T Consensus       201 ~~y~aPE~l~~~~y~~k~DiwS~Gvvl~ell~~g~~p~~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~dP~~  280 (299)
T d1fgka_         201 VKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQ  280 (299)
T ss_dssp             GGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHTTCCCCCCSSCCHHHHHHHHHHTCSSGGG
T ss_pred             hhhhhhhHhcCCCCCchhhhHHhHHHHHHhccCCCCCCCCCCHHHHHHHHHcCCCCCCCccchHHHHHHHHHHccCCHhH
Confidence            47999999998899999999999999999997678999888888888888877777666665    45667788888999


Q ss_pred             CCChhhhhhc
Q psy8478          78 APSAVSKKRI   87 (88)
Q Consensus        78 rp~~~~~~~~   87 (88)
                      |||+.++.+.
T Consensus       281 Rps~~eil~~  290 (299)
T d1fgka_         281 RPTFKQLVED  290 (299)
T ss_dssp             SCCHHHHHHH
T ss_pred             CcCHHHHHHH
Confidence            9999999763

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=5e-20  Score=97.93  Aligned_cols=87  Identities=33%  Similarity=0.710  Sum_probs=68.3

Q ss_pred             CCcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHH-HHHHHcCCCCCCCCCCh----HHHHHHHhhCc
Q psy8478           1 MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDV-LHYVRGGGRLNRPANCS----HLIRSRNRLTE   75 (88)
Q Consensus         1 ~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~----~~~~~~l~~~~   75 (88)
                      ++.|+|||.+....++.++|+||+|++++++++.|..||.+....+. ...+..+.+++.|..++    +++..|+..+|
T Consensus       229 t~~y~aPE~l~~~~~~~~~DiwS~Gvil~emlt~g~~Pf~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~li~~cl~~dP  308 (325)
T d1rjba_         229 PVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPVDANFYKLIQNGFKMDQPFYATEEIYIIMQSCWAFDS  308 (325)
T ss_dssp             CGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSG
T ss_pred             CCccCChHHHcCCCCCcceeccchhHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHcCCCh
Confidence            35799999999889999999999999999998758999987654443 44455555666665554    56667888889


Q ss_pred             ccCCChhhhhhc
Q psy8478          76 NKAPSAVSKKRI   87 (88)
Q Consensus        76 ~~rp~~~~~~~~   87 (88)
                      .+|||++++.+.
T Consensus       309 ~~RPt~~ei~~~  320 (325)
T d1rjba_         309 RKRPSFPNLTSF  320 (325)
T ss_dssp             GGSCCHHHHHHH
T ss_pred             hHCcCHHHHHHH
Confidence            999999998753

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=6.3e-20  Score=96.25  Aligned_cols=85  Identities=19%  Similarity=0.334  Sum_probs=68.1

Q ss_pred             CCcccCcchhc-----cCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCC--C----CCCChHHHHH
Q psy8478           1 MTRWMAPECLV-----DGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLN--R----PANCSHLIRS   69 (88)
Q Consensus         1 ~~~~~~pe~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~----~~~~~~~~~~   69 (88)
                      ++.|+|||.+.     ...|+.++|+||+|++++++++ |..||.+.+..+....+..+..+.  .    +..+.+++.+
T Consensus       173 t~~y~APE~l~~~~~~~~~y~~k~DiwSlGvilyemlt-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~~li~~  251 (288)
T d2jfla1         173 TPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAE-IEPPHHELNPMRVLLKIAKSEPPTLAQPSRWSSNFKDFLKK  251 (288)
T ss_dssp             CCTTCCHHHHTTCSTTTSSTTTHHHHHHHHHHHHHHHH-SSCTTTTSCGGGHHHHHHHSCCCCCSSGGGSCHHHHHHHHH
T ss_pred             ccccCCHHHHhhcccCCCCCChhhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHHcCCCCCCCccccCCHHHHHHHHH
Confidence            46799999984     3457889999999999999999 999999888877877776654322  2    2345567888


Q ss_pred             HHhhCcccCCChhhhhh
Q psy8478          70 RNRLTENKAPSAVSKKR   86 (88)
Q Consensus        70 ~l~~~~~~rp~~~~~~~   86 (88)
                      ||..+|.+|||++++++
T Consensus       252 ~L~~dp~~R~t~~ell~  268 (288)
T d2jfla1         252 CLEKNVDARWTTSQLLQ  268 (288)
T ss_dssp             HSCSSTTTSCCHHHHTT
T ss_pred             HccCChhHCcCHHHHhc
Confidence            99999999999999865

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=9e-20  Score=96.08  Aligned_cols=85  Identities=19%  Similarity=0.253  Sum_probs=67.2

Q ss_pred             CCcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcC--CC----------------------
Q psy8478           1 MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGG--GR----------------------   56 (88)
Q Consensus         1 ~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~----------------------   56 (88)
                      ++.|+|||.+.+..|+.++|+||+|++++++++ |..||.+.+..+....+...  ..                      
T Consensus       178 T~~Y~APE~~~~~~y~~~~DiwSlG~il~ell~-g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (305)
T d1blxa_         178 TLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFR-RKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQ  256 (305)
T ss_dssp             CCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHH-SSCSCCCSSHHHHHHHHHHHHCCCCGGGSCTTCSSCGGGSCCCCCC
T ss_pred             ChhhcCcchhcCCCCChhehhhchHHHHHHHHH-CCCCCCCCCHHHHHHHHHHhhCCCchhcccccccchhhhhcccccc
Confidence            467999999999999999999999999999999 99999988877776665321  00                      


Q ss_pred             ------CCCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          57 ------LNRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        57 ------~~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                            ...+..+.+++.+||..+|.+|||++++++
T Consensus       257 ~~~~~~~~~s~~~~dli~~mL~~dP~~R~sa~e~L~  292 (305)
T d1blxa_         257 PIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALS  292 (305)
T ss_dssp             CGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             chhhccccCCHHHHHHHHHHCcCChhHCcCHHHHhc
Confidence                  001122456888999999999999999864

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.4e-19  Score=93.90  Aligned_cols=85  Identities=38%  Similarity=0.761  Sum_probs=71.4

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCC----hHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPANC----SHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~----~~~~~~~l~~~~~~   77 (88)
                      +.|+|||.+....++.++|+||+|++++++++.|..|+......++...+..+.+++.+..+    .+++.+|+..+|.+
T Consensus       164 ~~y~aPE~l~~~~~t~~sDIwSfG~il~el~t~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~li~~cl~~dP~~  243 (262)
T d1byga_         164 VKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKMDAPDGCPPAVYEVMKNCWHLDAAM  243 (262)
T ss_dssp             TTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGGGHHHHHTTTCCCCCCTTCCHHHHHHHHHHTCSSGGG
T ss_pred             ccCCChHHHhCCCCChHHHHHhHHHHHHHHHHCCCCCCCCCCHHHHHHHHHcCCCCCCCccCCHHHHHHHHHHcccCHhH
Confidence            46899999988889999999999999999997678888888888888888777776666654    45666788888999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      |||+.++.+
T Consensus       244 Rps~~~l~~  252 (262)
T d1byga_         244 RPSFLQLRE  252 (262)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHHH
Confidence            999999865

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=99.79  E-value=8.5e-20  Score=97.89  Aligned_cols=85  Identities=19%  Similarity=0.295  Sum_probs=71.0

Q ss_pred             CCcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC-C------CCCCChHHHHHHHhh
Q psy8478           1 MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRL-N------RPANCSHLIRSRNRL   73 (88)
Q Consensus         1 ~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~------~~~~~~~~~~~~l~~   73 (88)
                      ++.|+|||.+.+..|+.++|+|++|++++++++ |..||.+.+..+....+..+... +      .+..+.+++.+||..
T Consensus       188 T~~Y~aPEv~~~~~~~~~~DiwSlGvilyell~-G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~  266 (350)
T d1koaa2         188 TAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLS-GLSPFGGENDDETLRNVKSCDWNMDDSAFSGISEDGKDFIRKLLLA  266 (350)
T ss_dssp             CTTTCCHHHHHTCCBCHHHHHHHHHHHHHHHHH-SSCSSCCSSHHHHHHHHHHTCCCSCCGGGGGCCHHHHHHHHHHCCS
T ss_pred             cccccCHHHHcCCCCChhHhhhhhhHHHHHHHh-CCCCCCCCCHHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHHccC
Confidence            467999999998889999999999999999999 99999988888888887655321 1      233456788899999


Q ss_pred             CcccCCChhhhhh
Q psy8478          74 TENKAPSAVSKKR   86 (88)
Q Consensus        74 ~~~~rp~~~~~~~   86 (88)
                      +|.+|||++++++
T Consensus       267 dP~~R~t~~eil~  279 (350)
T d1koaa2         267 DPNTRMTIHQALE  279 (350)
T ss_dssp             SGGGSCCHHHHHH
T ss_pred             ChhHCcCHHHHhc
Confidence            9999999999865

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=6.9e-20  Score=96.23  Aligned_cols=84  Identities=21%  Similarity=0.332  Sum_probs=70.1

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC-------CCCCCChHHHHHHHhhC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRL-------NRPANCSHLIRSRNRLT   74 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-------~~~~~~~~~~~~~l~~~   74 (88)
                      +.|+|||.+.+..++.++|+||+|++++++++ |..||.+.+..+....+..+...       ..+..+.+++.+||..+
T Consensus       180 ~~y~APE~~~~~~~~~~~DiwSlGvilyell~-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~d  258 (293)
T d1jksa_         180 PEFVAPEIVNYEPLGLEADMWSIGVITYILLS-GASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKD  258 (293)
T ss_dssp             GGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHH-SSCSSCCSSHHHHHHHHHTTCCCCCHHHHTTSCHHHHHHHHTTSCSS
T ss_pred             CcccCHHHHcCCCCCCcccchhhhHHHHHHHc-CCCCCCCCCHHHHHHHHHhcCCCCCchhcCCCCHHHHHHHHHHccCC
Confidence            57999999998889999999999999999999 99999988888888887665322       12334567888899999


Q ss_pred             cccCCChhhhhh
Q psy8478          75 ENKAPSAVSKKR   86 (88)
Q Consensus        75 ~~~rp~~~~~~~   86 (88)
                      |.+|||++++++
T Consensus       259 P~~R~s~~eil~  270 (293)
T d1jksa_         259 PKKRMTIQDSLQ  270 (293)
T ss_dssp             GGGSCCHHHHHH
T ss_pred             hhHCcCHHHHhc
Confidence            999999999864

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.79  E-value=2.7e-19  Score=94.58  Aligned_cols=85  Identities=18%  Similarity=0.346  Sum_probs=68.2

Q ss_pred             CCcccCcchhcc---CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCC-----CCCChHHHHHHHh
Q psy8478           1 MTRWMAPECLVD---GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNR-----PANCSHLIRSRNR   72 (88)
Q Consensus         1 ~~~~~~pe~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~l~   72 (88)
                      ++.|+|||.+.+   ..|+.++|+||+|++++++++ |..||.+....+....+..+..+..     +..+.+++..|+.
T Consensus       174 T~~Y~APE~~~~~~~~~y~~~~DiwSlGvilyel~~-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~s~~~~~li~~~L~  252 (309)
T d1u5ra_         174 TPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAE-RKPPLFNMNAMSALYHIAQNESPALQSGHWSEYFRNFVDSCLQ  252 (309)
T ss_dssp             CGGGCCHHHHTTTTSCCBCTHHHHHHHHHHHHHHHH-SSCTTTTSCHHHHHHHHHHSCCCCCSCTTSCHHHHHHHHHHTC
T ss_pred             CccccCHHHHhccCCCCcCchhhhhhHHHHHHHHHH-CCCCCCCCCHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHCc
Confidence            467999999864   358889999999999999999 9999988888777777765543322     2345678888999


Q ss_pred             hCcccCCChhhhhh
Q psy8478          73 LTENKAPSAVSKKR   86 (88)
Q Consensus        73 ~~~~~rp~~~~~~~   86 (88)
                      .+|.+|||++++++
T Consensus       253 ~dP~~Rpt~~ell~  266 (309)
T d1u5ra_         253 KIPQDRPTSEVLLK  266 (309)
T ss_dssp             SSGGGSCCHHHHTT
T ss_pred             CChhHCcCHHHHHh
Confidence            99999999999864

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=3.7e-19  Score=93.28  Aligned_cols=85  Identities=39%  Similarity=0.722  Sum_probs=68.7

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCC----hHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPANC----SHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~----~~~~~~~l~~~~~~   77 (88)
                      +.|+|||.+....|+.++|+||+|++++++++.+.+++.+.+..++...+..+.+++.|..+    .+++..|+..+|.+
T Consensus       180 ~~y~aPE~~~~~~~~~k~DiwS~Gv~l~ell~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~dP~~  259 (287)
T d1opja_         180 IKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSD  259 (287)
T ss_dssp             GGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGG
T ss_pred             ccccChHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCCCCCCCccchHHHHHHHHHHcCCCHhH
Confidence            46999999998899999999999999999998455566666777777777777666665554    45677788899999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      |||++++.+
T Consensus       260 Rps~~ei~~  268 (287)
T d1opja_         260 RPSFAEIHQ  268 (287)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHHH
Confidence            999999864

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=2.4e-19  Score=93.30  Aligned_cols=84  Identities=20%  Similarity=0.347  Sum_probs=65.8

Q ss_pred             CCcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCC-HHHHHHHHHcCCCCC-----CCCCChHHHHHHHhhC
Q psy8478           1 MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPART-NVDVLHYVRGGGRLN-----RPANCSHLIRSRNRLT   74 (88)
Q Consensus         1 ~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~-----~~~~~~~~~~~~l~~~   74 (88)
                      ++.|+|||.+.+ .++.++|+||+|++++++++ |..||.... ..++...+..+..+.     .+..+.+++.+|+..+
T Consensus       176 T~~Y~aPE~~~~-~~~~~~DIwSlGvilyel~~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~~l~~d  253 (270)
T d1t4ha_         176 TPEFMAPEMYEE-KYDESVDVYAFGMCMLEMAT-SEYPYSECQNAAQIYRRVTSGVKPASFDKVAIPEVKEIIEGCIRQN  253 (270)
T ss_dssp             SCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHH-SSCTTTTCSSHHHHHHHHTTTCCCGGGGGCCCHHHHHHHHHHSCSS
T ss_pred             CccccCHHHhCC-CCCCcCchhhHHHHHHHHHH-CCCCCCCcccHHHHHHHHHcCCCCcccCccCCHHHHHHHHHHccCC
Confidence            468999998864 58999999999999999999 999997654 455556665554321     2334667888999999


Q ss_pred             cccCCChhhhhh
Q psy8478          75 ENKAPSAVSKKR   86 (88)
Q Consensus        75 ~~~rp~~~~~~~   86 (88)
                      |++|||++++++
T Consensus       254 p~~R~s~~ell~  265 (270)
T d1t4ha_         254 KDERYSIKDLLN  265 (270)
T ss_dssp             GGGSCCHHHHHT
T ss_pred             HhHCcCHHHHhC
Confidence            999999999875

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.79  E-value=2.2e-19  Score=95.18  Aligned_cols=85  Identities=15%  Similarity=0.319  Sum_probs=70.4

Q ss_pred             CCcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC---CCCCCChHHHHHHHhhCccc
Q psy8478           1 MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRL---NRPANCSHLIRSRNRLTENK   77 (88)
Q Consensus         1 ~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~l~~~~~~   77 (88)
                      ++.|+|||.+.+..|+.++|+||+|++++++++ |..||.+.+..+....+..+...   ..+..+.+++.+||..+|.+
T Consensus       164 t~~Y~APE~l~~~~y~~~~DiwSlGvilyemlt-G~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~L~~dp~~  242 (316)
T d1fota_         164 TPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLA-GYTPFYDSNTMKTYEKILNAELRFPPFFNEDVKDLLSRLITRDLSQ  242 (316)
T ss_dssp             CTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHH-SSCTTCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSCTTT
T ss_pred             cccccCHHHHcCCCCCchhhccccchhHHHHHh-CCCCCCCcCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHhhhCHHh
Confidence            467999999998889999999999999999999 99999998888888888765321   23445677888999999999


Q ss_pred             CC-----Chhhhhh
Q psy8478          78 AP-----SAVSKKR   86 (88)
Q Consensus        78 rp-----~~~~~~~   86 (88)
                      |+     +++++++
T Consensus       243 R~~~~r~t~~~il~  256 (316)
T d1fota_         243 RLGNLQNGTEDVKN  256 (316)
T ss_dssp             CTTSSTTTTHHHHT
T ss_pred             ccccchhhHHHHHc
Confidence            96     7887753

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.4e-19  Score=96.04  Aligned_cols=83  Identities=24%  Similarity=0.462  Sum_probs=69.4

Q ss_pred             CCcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCC----CCChHHHHHHHhhCcc
Q psy8478           1 MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRP----ANCSHLIRSRNRLTEN   76 (88)
Q Consensus         1 ~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~l~~~~~   76 (88)
                      ++.|+|||.+.+..|+.++|+||+|++++++++ |..||.+.+..++...+..+. +..|    ..+.+++.+||..+|.
T Consensus       166 t~~y~aPE~~~~~~~~~~~DiwSlGvilyemlt-G~~PF~~~~~~~~~~~i~~~~-~~~p~~~s~~~~dli~~~L~~dP~  243 (320)
T d1xjda_         166 TPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLI-GQSPFHGQDEEELFHSIRMDN-PFYPRWLEKEAKDLLVKLFVREPE  243 (320)
T ss_dssp             CGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHH-SSCSSCCSSHHHHHHHHHHCC-CCCCTTSCHHHHHHHHHHSCSSGG
T ss_pred             CCCcCCHHHHcCCCCCchhhhhhhhHHHHHHHh-CCCCCCCCCHHHHHHHHHcCC-CCCCccCCHHHHHHHHHhcccCCC
Confidence            357999999999899999999999999999999 999999988888888887653 3333    3455678889999999


Q ss_pred             cCCChh-hhh
Q psy8478          77 KAPSAV-SKK   85 (88)
Q Consensus        77 ~rp~~~-~~~   85 (88)
                      +||+++ +++
T Consensus       244 ~R~s~~~~l~  253 (320)
T d1xjda_         244 KRLGVRGDIR  253 (320)
T ss_dssp             GSBTTBSCGG
T ss_pred             CCcCHHHHHH
Confidence            999986 564

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=2.3e-19  Score=94.80  Aligned_cols=85  Identities=40%  Similarity=0.699  Sum_probs=71.4

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCC----hHHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPANC----SHLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~----~~~~~~~l~~~~~~   77 (88)
                      +.|++||.+....++.++|+||+|++++++++.+..||.+.+..++...+.++.+++.+..+    .+++..|+..+|++
T Consensus       190 ~~y~aPE~l~~~~~~~~sDvwSfGvil~ell~~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~li~~cl~~dP~~  269 (309)
T d1fvra_         190 VRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYRLEKPLNCDDEVYDLMRQCWREKPYE  269 (309)
T ss_dssp             TTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHGGGTCCCCCCTTBCHHHHHHHHHHTCSSGGG
T ss_pred             CcccchHHhccCCCCccceeehhHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCccCCHHHHHHHHHHcCCChhH
Confidence            56899999998899999999999999999998456788888888888888877766655554    55677788888999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||+++++.+
T Consensus       270 RPs~~eil~  278 (309)
T d1fvra_         270 RPSFAQILV  278 (309)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHHH
Confidence            999999875

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.78  E-value=3.3e-19  Score=93.00  Aligned_cols=84  Identities=17%  Similarity=0.330  Sum_probs=66.6

Q ss_pred             CCcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC-------CCCCCChHHHHHHHhh
Q psy8478           1 MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRL-------NRPANCSHLIRSRNRL   73 (88)
Q Consensus         1 ~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-------~~~~~~~~~~~~~l~~   73 (88)
                      ++.|+|||.+.+..++.++|+||+|++++++++ |..||.+.+..+....+......       ..+..+.+++.+|+..
T Consensus       177 t~~Y~aPE~~~~~~~~~~~DiwSlGvilyellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~~li~~~L~~  255 (277)
T d1o6ya_         177 TAQYLSPEQARGDSVDARSDVYSLGCVLYEVLT-GEPPFTGDSPVSVAYQHVREDPIPPSARHEGLSADLDAVVLKALAK  255 (277)
T ss_dssp             --TTCCHHHHTTCCCCHHHHHHHHHHHHHHHHH-SSCSCCCSSHHHHHHHHHHCCCCCGGGTSSSCCHHHHHHHHHHTCS
T ss_pred             cccccCHHHHcCCCCCcceecccchHHHHHHHh-CCCCCCCcCHHHHHHHHHhcCCCCCchhccCCCHHHHHHHHHHccC
Confidence            357999999988889999999999999999999 99999988877776665443322       2234466788889999


Q ss_pred             CcccCC-Chhhhh
Q psy8478          74 TENKAP-SAVSKK   85 (88)
Q Consensus        74 ~~~~rp-~~~~~~   85 (88)
                      +|.+|| +++++.
T Consensus       256 dp~~R~~sa~~l~  268 (277)
T d1o6ya_         256 NPENRYQTAAEMR  268 (277)
T ss_dssp             SGGGSCSSHHHHH
T ss_pred             CHhHCHhHHHHHH
Confidence            999999 677764

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=4.2e-19  Score=92.51  Aligned_cols=86  Identities=34%  Similarity=0.685  Sum_probs=70.1

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHc-CCCCCCCCCCh----HHHHHHHhhCcc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRG-GGRLNRPANCS----HLIRSRNRLTEN   76 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~----~~~~~~l~~~~~   76 (88)
                      ..|+|||.+....++.++|+||+|++++++++.|..||.+.+..+....+.. +.+++.+..++    +++.+|+..+|+
T Consensus       178 ~~~~aPE~~~~~~~~~~~Di~S~Gvil~emlt~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~li~~cl~~dp~  257 (273)
T d1u46a_         178 FAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDKEGERLPRPEDCPQDIYNVMVQCWAHKPE  257 (273)
T ss_dssp             GGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTSCCCCCCCTTCCHHHHHHHHHHTCSSGG
T ss_pred             cccCCHHHHhCCCCCcchhhhhhHHHHHHHHhCCCCCCCCcCHHHHHHHHHhCCCCCCCcccccHHHHHHHHHHcCCChh
Confidence            3689999999888999999999999999999768999999888888888754 34455555444    566778888899


Q ss_pred             cCCChhhhhhc
Q psy8478          77 KAPSAVSKKRI   87 (88)
Q Consensus        77 ~rp~~~~~~~~   87 (88)
                      +|||+.++.++
T Consensus       258 ~RPt~~ei~~~  268 (273)
T d1u46a_         258 DRPTFVALRDF  268 (273)
T ss_dssp             GSCCHHHHHHH
T ss_pred             HCcCHHHHHHH
Confidence            99999998764

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=4.1e-19  Score=95.24  Aligned_cols=85  Identities=21%  Similarity=0.374  Sum_probs=69.9

Q ss_pred             CCcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC---CCCCCChHHHHHHHhhCccc
Q psy8478           1 MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRL---NRPANCSHLIRSRNRLTENK   77 (88)
Q Consensus         1 ~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~l~~~~~~   77 (88)
                      ++.|+|||.+.+..++.++|+|++|+++|++++ |..||.+.+.......+..+...   ..+..+.+++.+||..+|.+
T Consensus       201 t~~Y~APE~~~~~~~~~~~DiwSlGvilyemlt-G~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~L~~dP~k  279 (350)
T d1rdqe_         201 TPEALAPEIILSKGYNKAVDWWALGVLIYEMAA-GYPPFFADQPIQIYEKIVSGKVRFPSHFSSDLKDLLRNLLQVDLTK  279 (350)
T ss_dssp             CGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHH-SSCSSCCSSHHHHHHHHHHCCCCCCTTCCHHHHHHHHHHSCSCTTT
T ss_pred             ccccCCHHHHcCCCCCccccccchhHHHHHHHh-CCCCCCCcCHHHHHHHHhcCCCCCCccCCHHHHHHHHHHhhhCHHh
Confidence            367999999998889999999999999999999 99999988888888888765422   23345667888889999999


Q ss_pred             CC-----Chhhhhh
Q psy8478          78 AP-----SAVSKKR   86 (88)
Q Consensus        78 rp-----~~~~~~~   86 (88)
                      |+     +++++++
T Consensus       280 R~~~~r~t~~ell~  293 (350)
T d1rdqe_         280 RFGNLKNGVNDIKN  293 (350)
T ss_dssp             CTTSSTTTTHHHHT
T ss_pred             ccccccccHHHHHc
Confidence            84     7888764

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.4e-18  Score=91.01  Aligned_cols=85  Identities=35%  Similarity=0.652  Sum_probs=70.1

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCCh----HHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPANCS----HLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~~~~~~l~~~~~~   77 (88)
                      +.|+|||.+....++.++|+||+|++++++++.+.+++.+....++...+..+.+.+.+..++    +++.+|+..+|++
T Consensus       178 ~~y~aPE~~~~~~~~~ksDI~S~Giil~el~t~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~dP~~  257 (285)
T d1fmka3         178 IKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEE  257 (285)
T ss_dssp             GGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTSCHHHHHHHHHHTCSSGGG
T ss_pred             ccccChHHHhCCCCCcHHhhhcchHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCCCCCcccCHHHHHHHHHHcccCHhH
Confidence            569999999988999999999999999999985667777778888888888776666666655    4566677778999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||+++++.+
T Consensus       258 Rps~~~i~~  266 (285)
T d1fmka3         258 RPTFEYLQA  266 (285)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHHH
Confidence            999999864

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=3.5e-19  Score=92.93  Aligned_cols=85  Identities=32%  Similarity=0.491  Sum_probs=63.7

Q ss_pred             CCcccCcchhcc---CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHH-HHHHHHcCCCCC--------CCCCChHHHH
Q psy8478           1 MTRWMAPECLVD---GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVD-VLHYVRGGGRLN--------RPANCSHLIR   68 (88)
Q Consensus         1 ~~~~~~pe~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~--------~~~~~~~~~~   68 (88)
                      ++.|+|||.+..   ..|+.++|+||+|+++|++++ |..||.+..... ....+..+...+        .|..+.+++.
T Consensus       169 t~~y~APE~l~~~~~~~~~~~sDiwS~Gv~l~el~t-g~~Pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~li~  247 (276)
T d1uwha_         169 SILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMT-GQLPYSNINNRDQIIFMVGRGYLSPDLSKVRSNCPKAMKRLMA  247 (276)
T ss_dssp             CGGGCCHHHHTTCSSCCCCHHHHHHHHHHHHHHHHH-SSCTTTTCCCHHHHHHHHHHTSCCCCGGGSCTTCCHHHHHHHH
T ss_pred             CcccCCHHHHhcccCCCCCchhhhhhhHHHHHHHHH-CCCCCCCCChHHHHHHHHhcCCCCCcchhccccchHHHHHHHH
Confidence            367999999864   357889999999999999999 999998765544 444444443222        2234556777


Q ss_pred             HHHhhCcccCCChhhhhh
Q psy8478          69 SRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        69 ~~l~~~~~~rp~~~~~~~   86 (88)
                      +|+..+|.+|||+.++.+
T Consensus       248 ~cl~~dp~~RPt~~~il~  265 (276)
T d1uwha_         248 ECLKKKRDERPLFPQILA  265 (276)
T ss_dssp             HHTCSSGGGSCCHHHHHH
T ss_pred             HHcCCCHhHCcCHHHHHH
Confidence            888899999999999865

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.1e-18  Score=93.21  Aligned_cols=84  Identities=19%  Similarity=0.397  Sum_probs=69.0

Q ss_pred             CCcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCC----CChHHHHHHHhhCcc
Q psy8478           1 MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPA----NCSHLIRSRNRLTEN   76 (88)
Q Consensus         1 ~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~l~~~~~   76 (88)
                      ++.|+|||.+.+..|+.++|+||+|++++++++ |..||.+.+..++...+..+. ...|.    .+.+++.+||..+|.
T Consensus       168 T~~Y~aPE~~~~~~y~~~~DiwSlGvilyeml~-G~~pf~~~~~~~~~~~i~~~~-~~~p~~~s~~~~dli~~~L~~dP~  245 (337)
T d1o6la_         168 TPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMC-GRLPFYNQDHERLFELILMEE-IRFPRTLSPEAKSLLAGLLKKDPK  245 (337)
T ss_dssp             CGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHH-SSCSSCCSSHHHHHHHHHHCC-CCCCTTSCHHHHHHHHHHTCSSTT
T ss_pred             CHHHhhhhhccCCCCChhhcccchhhHHHHHHH-CCCCCCCcCHHHHHHHHhcCC-CCCCccCCHHHHHHHHhhccCCch
Confidence            467999999999899999999999999999999 999999988888888877653 33333    456678888999999


Q ss_pred             cCCC-----hhhhhh
Q psy8478          77 KAPS-----AVSKKR   86 (88)
Q Consensus        77 ~rp~-----~~~~~~   86 (88)
                      +|++     ++++.+
T Consensus       246 ~R~~~~~~~~~eil~  260 (337)
T d1o6la_         246 QRLGGGPSDAKEVME  260 (337)
T ss_dssp             TSTTCSTTTHHHHHT
T ss_pred             hhcccccccHHHHHc
Confidence            9995     666643

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=99.77  E-value=3.4e-19  Score=95.61  Aligned_cols=85  Identities=19%  Similarity=0.336  Sum_probs=69.7

Q ss_pred             CCcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC-C------CCCCChHHHHHHHhh
Q psy8478           1 MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRL-N------RPANCSHLIRSRNRL   73 (88)
Q Consensus         1 ~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~------~~~~~~~~~~~~l~~   73 (88)
                      ++.|+|||.+.+..++.++|+|++|++++++++ |..||.+....+....+..+... +      .+..+.+++..||..
T Consensus       191 t~~y~aPE~~~~~~~~~~~DiwSlGvilyellt-G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~  269 (352)
T d1koba_         191 TAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLS-GLSPFAGEDDLETLQNVKRCDWEFDEDAFSSVSPEAKDFIKNLLQK  269 (352)
T ss_dssp             SGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHH-SCCSSCCSSHHHHHHHHHHCCCCCCSSTTTTSCHHHHHHHHTTSCS
T ss_pred             cccccCHHHHcCCCCCCccchHHHHHHHHHHHh-CCCCCCCCCHHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHHccC
Confidence            357999999998889999999999999999999 99999988888888888655321 1      223355677788888


Q ss_pred             CcccCCChhhhhh
Q psy8478          74 TENKAPSAVSKKR   86 (88)
Q Consensus        74 ~~~~rp~~~~~~~   86 (88)
                      +|.+|||++++++
T Consensus       270 dp~~R~s~~eil~  282 (352)
T d1koba_         270 EPRKRLTVHDALE  282 (352)
T ss_dssp             SGGGSCCHHHHHT
T ss_pred             ChhHCcCHHHHhc
Confidence            8999999999864

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.2e-18  Score=91.65  Aligned_cols=85  Identities=34%  Similarity=0.677  Sum_probs=67.0

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCC-HHHHHHHHHcCCCCCCCCCC----hHHHHHHHhhCcc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPART-NVDVLHYVRGGGRLNRPANC----SHLIRSRNRLTEN   76 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~----~~~~~~~l~~~~~   76 (88)
                      +.|+|||.+.+..++.++|+||+|++++++++.+..||.+.. .......+..+.++..|..+    .+++.+|+..+|.
T Consensus       200 ~~y~APE~l~~~~~~~~sDiwS~Gvil~ellt~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~  279 (299)
T d1ywna1         200 LKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPS  279 (299)
T ss_dssp             GGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCCSHHHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGG
T ss_pred             ccccchhHhhcCCCCcccceeehHHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCCCCCCccCCHHHHHHHHHHcCCChh
Confidence            579999999988999999999999999999984567887654 34455556666666666554    4566778888899


Q ss_pred             cCCChhhhhh
Q psy8478          77 KAPSAVSKKR   86 (88)
Q Consensus        77 ~rp~~~~~~~   86 (88)
                      +|||+.++.+
T Consensus       280 ~Rpt~~eil~  289 (299)
T d1ywna1         280 QRPTFSELVE  289 (299)
T ss_dssp             GSCCHHHHHH
T ss_pred             HCcCHHHHHH
Confidence            9999999865

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=4e-18  Score=90.02  Aligned_cols=85  Identities=45%  Similarity=0.877  Sum_probs=71.7

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCCh----HHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPANCS----HLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~~~~~~l~~~~~~   77 (88)
                      +.|++||.+....++.++|+|++|++++++++.+..|+.+.+..+....+..+.+++.|..++    +++..|+..+|.+
T Consensus       199 ~~y~aPe~l~~~~~~~~~Dv~S~G~il~El~t~~~~p~~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~~P~~  278 (308)
T d1p4oa_         199 VRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKM  278 (308)
T ss_dssp             GGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGG
T ss_pred             cccCCHHHHccCCCCcccccccHHHHHHHHHhCCCCCCCCCCHHHHHHHHHhCCCCCCcccchHHHHHHHHHHcCCChhH
Confidence            579999999988899999999999999999994578898889999998888877766666555    4566678888999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      |||++++.+
T Consensus       279 RPs~~~il~  287 (308)
T d1p4oa_         279 RPSFLEIIS  287 (308)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHHH
Confidence            999999865

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=3.8e-19  Score=92.63  Aligned_cols=85  Identities=18%  Similarity=0.264  Sum_probs=62.6

Q ss_pred             CCcccCcchhccCCC-CchhhHHHHHHHHHHHHhcCCCCCCCCCHH-HHHHHHHcCCCC-C----CCCCChHHHHHHHhh
Q psy8478           1 MTRWMAPECLVDGLF-SSQSDVWAFGVLLWEIMSLGQQPYPARTNV-DVLHYVRGGGRL-N----RPANCSHLIRSRNRL   73 (88)
Q Consensus         1 ~~~~~~pe~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~-~----~~~~~~~~~~~~l~~   73 (88)
                      ++.|+|||.+.+..+ +.++|+||+|++++++++ |..||...... .....+...... .    .+..+.+++.+||..
T Consensus       168 T~~Y~APE~~~~~~~~~~~~DiwSlGvilyeml~-G~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~  246 (271)
T d1nvra_         168 TLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLA-GELPWDQPSDSCQEYSDWKEKKTYLNPWKKIDSAPLALLHKILVE  246 (271)
T ss_dssp             CGGGSCTHHHHCSSBCHHHHHHHHHHHHHHHHHH-SSCSCSSSSTTSHHHHHHHTTCTTSTTGGGSCHHHHHHHHHHSCS
T ss_pred             CcCccCHhHhcCCCCCCCceeeeHhHHHHHHHHh-CCCCCCCCChHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHcCC
Confidence            467999999988766 568999999999999999 99999765432 222333322211 1    233455788899999


Q ss_pred             CcccCCChhhhhh
Q psy8478          74 TENKAPSAVSKKR   86 (88)
Q Consensus        74 ~~~~rp~~~~~~~   86 (88)
                      +|.+|||++++++
T Consensus       247 dP~~R~t~~eil~  259 (271)
T d1nvra_         247 NPSARITIPDIKK  259 (271)
T ss_dssp             STTTSCCHHHHTT
T ss_pred             ChhHCcCHHHHhc
Confidence            9999999999865

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=5.6e-18  Score=89.94  Aligned_cols=85  Identities=21%  Similarity=0.356  Sum_probs=62.6

Q ss_pred             CCcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHH---------------------------------
Q psy8478           1 MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDV---------------------------------   47 (88)
Q Consensus         1 ~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------   47 (88)
                      ++.|+|||++.+..|+.++|+||+|++++++++ |..||.+.+..+.                                 
T Consensus       166 T~~Y~APEvl~~~~y~~~~DiWSlGvil~ell~-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (322)
T d1s9ja_         166 TRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAV-GRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLSSYGMDS  244 (322)
T ss_dssp             SSCCCCHHHHHCSCCCTTHHHHHHHHHHHHHHH-SSCCSSCCCTTHHHHHC-----------------------------
T ss_pred             CccccCchHHcCCCCCcHHHHHHHHHHHHHHHH-CCCCCCCCCHHHHHHHHHHHhcCCcccCCccccccccccccccccc
Confidence            367999999999899999999999999999999 9999976542211                                 


Q ss_pred             ---------HHHHHcCCCCCCC-----CCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          48 ---------LHYVRGGGRLNRP-----ANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        48 ---------~~~i~~~~~~~~~-----~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                               ...+.....+..+     ..+.+++.+||..+|.+|||++++++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~ta~e~L~  297 (322)
T d1s9ja_         245 RPPMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERADLKQLMV  297 (322)
T ss_dssp             -CCCCHHHHHHHHHTSCCCCCCBTTBCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             ccchhHHHHHhhhhccCCccCccccCCHHHHHHHHHHcCCChhHCcCHHHHhh
Confidence                     1111111111111     23456888999999999999999865

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=5.4e-18  Score=89.14  Aligned_cols=85  Identities=19%  Similarity=0.256  Sum_probs=65.9

Q ss_pred             CCcccCcchhccC-CCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC--CC--------------------
Q psy8478           1 MTRWMAPECLVDG-LFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG--RL--------------------   57 (88)
Q Consensus         1 ~~~~~~pe~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~--------------------   57 (88)
                      ++.|+|||.+... .|+.++|+||+|++++++++ |..||.+....+.+..+.+..  ..                    
T Consensus       163 t~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~-g~~pf~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (299)
T d1ua2a_         163 TRWYRAPELLFGARMYGVGVDMWAVGCILAELLL-RVPFLPGDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFP  241 (299)
T ss_dssp             CCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHH-SSCSSCCSSHHHHHHHHHHHHCCCCTTTSSSTTSSTTCCCCCCCC
T ss_pred             ChhhccHHHHccCCCCChhhhhhhcchHHHHHHh-CcCCCCCCCHHHHHHHHHHhcCCCChhhccchhccchhhhhccCC
Confidence            3579999998754 57889999999999999999 999999888877776664210  00                    


Q ss_pred             ---------CCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          58 ---------NRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        58 ---------~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                               ..+..+.+++.+||..+|++||||+++++
T Consensus       242 ~~~~~~~~~~~s~~~~dll~~~L~~dP~~R~sa~e~L~  279 (299)
T d1ua2a_         242 GIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALK  279 (299)
T ss_dssp             CCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred             CCChHHhcccCCHHHHHHHHHHccCChhhCcCHHHHhC
Confidence                     01123456889999999999999999875

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=7.6e-18  Score=89.09  Aligned_cols=85  Identities=36%  Similarity=0.695  Sum_probs=62.6

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCCh----HHHHHHHhhCccc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRLNRPANCS----HLIRSRNRLTENK   77 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~~~~~~l~~~~~~   77 (88)
                      +.|++||.+....++.++|+||+|++++++++.+.+++......+....+..+.++..|..++    +++..|+..+|++
T Consensus       198 ~~y~aPE~~~~~~~~~ksDI~SfGivl~El~t~~~p~~~~~~~~~~~~~i~~g~~~~~p~~~~~~l~~li~~cl~~dP~~  277 (311)
T d1r0pa_         198 VKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYCPDPLYEVMLKCWHPKAEM  277 (311)
T ss_dssp             GGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCC------CHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGG
T ss_pred             ccccChHHHhcCCCCChhHhhhhHHHHHHHHHCCCCCCCCCCHHHHHHHHHcCCCCCCcccCcHHHHHHHHHHcCCCHhH
Confidence            468999999888899999999999999999984444444445556666777777666666554    5566677788999


Q ss_pred             CCChhhhhh
Q psy8478          78 APSAVSKKR   86 (88)
Q Consensus        78 rp~~~~~~~   86 (88)
                      ||++.++.+
T Consensus       278 RPs~~ei~~  286 (311)
T d1r0pa_         278 RPSFSELVS  286 (311)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHHH
Confidence            999999865

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=3.4e-18  Score=90.78  Aligned_cols=85  Identities=18%  Similarity=0.350  Sum_probs=70.2

Q ss_pred             CCcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC-------CCCCCChHHHHHHHhh
Q psy8478           1 MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGRL-------NRPANCSHLIRSRNRL   73 (88)
Q Consensus         1 ~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-------~~~~~~~~~~~~~l~~   73 (88)
                      ++.|++||...+..|+.++|+|++|++++++++ |..||.+.+..+....+..+...       ..+..+.+++..||..
T Consensus       166 t~~y~ape~~~~~~~~~~~DiWSlGvily~ll~-G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~  244 (321)
T d1tkia_         166 APEYYAPEVHQHDVVSTATDMWSLGTLVYVLLS-GINPFLAETNQQIIENIMNAEYTFDEEAFKEISIEAMDFVDRLLVK  244 (321)
T ss_dssp             CGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHH-SSCTTCCSSHHHHHHHHHHTCCCCCHHHHTTSCHHHHHHHHTTSCS
T ss_pred             ccccccchhccCCCCCchhhcccHHHHHHHHHh-CCCCCCCCCHHHHHHHHHhCCCCCChhhccCCCHHHHHHHHHHccC
Confidence            357899999988889999999999999999999 99999988888888888655321       1233456788888899


Q ss_pred             CcccCCChhhhhh
Q psy8478          74 TENKAPSAVSKKR   86 (88)
Q Consensus        74 ~~~~rp~~~~~~~   86 (88)
                      +|.+|||++++++
T Consensus       245 dp~~R~s~~eil~  257 (321)
T d1tkia_         245 ERKSRMTASEALQ  257 (321)
T ss_dssp             SGGGSCCHHHHHH
T ss_pred             ChhHCcCHHHHhc
Confidence            9999999999864

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=2.4e-17  Score=87.12  Aligned_cols=86  Identities=28%  Similarity=0.649  Sum_probs=66.5

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHH-HHHHHcCCCCCCCCC----ChHHHHHHHhhCcc
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDV-LHYVRGGGRLNRPAN----CSHLIRSRNRLTEN   76 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~----~~~~~~~~l~~~~~   76 (88)
                      +.|+|||.+....++.++|+||+|++++++++.|.+++.+.+..+. ...+..+.++..+..    +.+++..|+..+|.
T Consensus       211 ~~y~aPE~~~~~~~~~~~DIwS~G~~l~ellt~g~p~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~Li~~cl~~dP~  290 (311)
T d1t46a_         211 VKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPAEMYDIMKTCWDADPL  290 (311)
T ss_dssp             GGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSSHHHHHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGG
T ss_pred             hHHcCHHHhcCCCCCCcccccchHHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCCCCCcccccHHHHHHHHHHcCCChh
Confidence            5799999999888999999999999999999857777766655443 444556665555544    45667778888899


Q ss_pred             cCCChhhhhhc
Q psy8478          77 KAPSAVSKKRI   87 (88)
Q Consensus        77 ~rp~~~~~~~~   87 (88)
                      +|||+.++.+.
T Consensus       291 ~RPs~~~il~~  301 (311)
T d1t46a_         291 KRPTFKQIVQL  301 (311)
T ss_dssp             GSCCHHHHHHH
T ss_pred             HCcCHHHHHHH
Confidence            99999998753

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=2.1e-18  Score=92.01  Aligned_cols=85  Identities=16%  Similarity=0.355  Sum_probs=62.1

Q ss_pred             CCcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHH----cCC-CCC------CCCCChHHHHH
Q psy8478           1 MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVR----GGG-RLN------RPANCSHLIRS   69 (88)
Q Consensus         1 ~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~----~~~-~~~------~~~~~~~~~~~   69 (88)
                      ++.|+|||.+.+..|+.++|+|++|++++++++ |..||.+....+....+.    .+. ..+      .+..+.+++.+
T Consensus       176 t~~y~aPE~~~~~~y~~~~DiwSlGvily~llt-g~~Pf~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~  254 (335)
T d2ozaa1         176 TPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLC-GYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEEVKMLIRN  254 (335)
T ss_dssp             CCSSCCCCCCCGGGGSHHHHHHHHHHHHHHHTT-SSCSCEETTCC--------CCCSCSSSCCTTHHHHSCHHHHHHHHH
T ss_pred             CcccCCcHHHcCCCCCHHHHHHhhchhHHHHhh-CCCCCCCCCHHHHHHHHHHHHhcCCCCCCCcccccCCHHHHHHHHH
Confidence            468999999988889999999999999999999 999997655433333322    111 111      22346678889


Q ss_pred             HHhhCcccCCChhhhhh
Q psy8478          70 RNRLTENKAPSAVSKKR   86 (88)
Q Consensus        70 ~l~~~~~~rp~~~~~~~   86 (88)
                      ||..+|.+|||+.++++
T Consensus       255 ~L~~dP~~R~s~~eil~  271 (335)
T d2ozaa1         255 LLKTEPTQRMTITEFMN  271 (335)
T ss_dssp             HSCSSTTTSCCHHHHHH
T ss_pred             HccCChhHCcCHHHHHc
Confidence            99999999999999864

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=7.6e-18  Score=87.70  Aligned_cols=79  Identities=23%  Similarity=0.481  Sum_probs=60.8

Q ss_pred             CCcccCcchhccCCC-CchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC---CCCCCCCChHHHHHHHhhCcc
Q psy8478           1 MTRWMAPECLVDGLF-SSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG---RLNRPANCSHLIRSRNRLTEN   76 (88)
Q Consensus         1 ~~~~~~pe~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~~~~~~~~~~l~~~~~   76 (88)
                      ++.|+|||.+.+..+ +.++|+||+|++++++++ |..||.+..      .+..+.   +...+..+.+++.+||..+|.
T Consensus       172 T~~y~aPE~~~~~~~~~~~~DiwSlGvilyell~-g~~Pf~~~~------~i~~~~~~~~~~~s~~~~~li~~~L~~dp~  244 (273)
T d1xwsa_         172 TRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVC-GDIPFEHDE------EIIRGQVFFRQRVSSECQHLIRWCLALRPS  244 (273)
T ss_dssp             CGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHH-SSCSCCSHH------HHHHCCCCCSSCCCHHHHHHHHHHTCSSGG
T ss_pred             CCCcCCHHHHcCCCCCCcccccccceeeehhHhh-CCCCCCCch------HHhhcccCCCCCCCHHHHHHHHHHccCCHh
Confidence            357999999987655 567899999999999999 999997522      222221   223455677888899999999


Q ss_pred             cCCChhhhhh
Q psy8478          77 KAPSAVSKKR   86 (88)
Q Consensus        77 ~rp~~~~~~~   86 (88)
                      +|||++++++
T Consensus       245 ~R~s~~eil~  254 (273)
T d1xwsa_         245 DRPTFEEIQN  254 (273)
T ss_dssp             GSCCHHHHHT
T ss_pred             HCcCHHHHhc
Confidence            9999999865

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.68  E-value=5.4e-17  Score=84.67  Aligned_cols=84  Identities=18%  Similarity=0.385  Sum_probs=66.8

Q ss_pred             CcccCcchhcc------CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC-CCC------CCCCChHHHH
Q psy8478           2 TRWMAPECLVD------GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGG-RLN------RPANCSHLIR   68 (88)
Q Consensus         2 ~~~~~pe~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~------~~~~~~~~~~   68 (88)
                      ..|++||.+..      ..++.++|+|++|++++++++ |..||.+.+.......+..+. ..+      .+..+.+++.
T Consensus       173 ~~y~~PE~~~~~~~~~~~~~~~~~DiwslGvilyeml~-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~  251 (277)
T d1phka_         173 PSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLA-GSPPFWHRKQMLMLRMIMSGNYQFGSPEWDDYSDTVKDLVS  251 (277)
T ss_dssp             GGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHH-SSCSSCCSSHHHHHHHHHHTCCCCCTTTGGGSCHHHHHHHH
T ss_pred             CCCCCHHHhhccccccCCCCCchheEcccchhhhhhcc-CCCCCCCCCHHHHHHHHHhCCCCCCCcccccCCHHHHHHHH
Confidence            46889998863      346778999999999999999 999999988888887776553 222      2234567888


Q ss_pred             HHHhhCcccCCChhhhhh
Q psy8478          69 SRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        69 ~~l~~~~~~rp~~~~~~~   86 (88)
                      +||..+|.+||+++++++
T Consensus       252 ~~L~~~p~~R~s~~eil~  269 (277)
T d1phka_         252 RFLVVQPQKRYTAEEALA  269 (277)
T ss_dssp             HHCCSSGGGSCCHHHHTT
T ss_pred             HHccCChhHCcCHHHHHc
Confidence            999999999999999865

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.68  E-value=2.3e-17  Score=88.85  Aligned_cols=85  Identities=21%  Similarity=0.340  Sum_probs=61.2

Q ss_pred             CCcccCcchhcc-CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHH--cCCCCCCC----CCChHHHHHHHhh
Q psy8478           1 MTRWMAPECLVD-GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVR--GGGRLNRP----ANCSHLIRSRNRL   73 (88)
Q Consensus         1 ~~~~~~pe~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~~----~~~~~~~~~~l~~   73 (88)
                      ++.|+|||.+.. ..|+.++|+||+|+++|++++ |..||.+...........  .......+    ..+.+++..||..
T Consensus       168 T~~y~APE~~~~~~~~~~~~DiwSlGvilyemlt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~  246 (364)
T d1omwa3         168 THGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLR-GHSPFRQHKTKDKHEIDRMTLTMAVELPDSFSPELRSLLEGLLQR  246 (364)
T ss_dssp             CGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHH-SSCSSCSSCSSCHHHHHHHSSSCCCCCCSSSCHHHHHHHHHHTCS
T ss_pred             ccccchhHHhhcCCCCCcccchhHHHHHHHHHHh-CCCCCCCCCHHHHHHHHHhcccCCCCCCCCCCHHHHHHHHHHccc
Confidence            467999999975 468899999999999999999 999997654322222221  12223333    3456788889999


Q ss_pred             CcccCCC-----hhhhhh
Q psy8478          74 TENKAPS-----AVSKKR   86 (88)
Q Consensus        74 ~~~~rp~-----~~~~~~   86 (88)
                      +|.+||+     |+++++
T Consensus       247 dP~~R~t~~~~~a~eil~  264 (364)
T d1omwa3         247 DVNRRLGCLGRGAQEVKE  264 (364)
T ss_dssp             STTTSTTTSSSTHHHHHT
T ss_pred             CHHHhCCCcccCHHHHHc
Confidence            9999999     566653

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=7.8e-17  Score=85.23  Aligned_cols=85  Identities=14%  Similarity=0.155  Sum_probs=64.0

Q ss_pred             CCcccCcchhccC-CCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHc---CCCCCC-----------------
Q psy8478           1 MTRWMAPECLVDG-LFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRG---GGRLNR-----------------   59 (88)
Q Consensus         1 ~~~~~~pe~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~~~-----------------   59 (88)
                      ++.|++||.+... .|+.++|+||+|++++++++ |..||.+.........+..   ......                 
T Consensus       184 T~~Y~aPE~~~~~~~~~~k~DiwSlGvil~el~~-g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (318)
T d3blha1         184 TLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWT-RSPIMQGNTEQHQLALISQLCGSITPEVWPNVDNYELYEKLELVK  262 (318)
T ss_dssp             CGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHH-SSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTCCCC-------CCS
T ss_pred             CHHHhhHHHHcCCCCCCcHHHcccCCceeeeHhh-CCCCCCCCCHHHHHHHHHHhcCCCChhhccccchhhhhhhhcccc
Confidence            3578999998765 68899999999999999999 9999988777666655432   111000                 


Q ss_pred             ---------------CCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          60 ---------------PANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        60 ---------------~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                                     ...+.+++..||..+|++|||++++++
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~sa~elL~  304 (318)
T d3blha1         263 GQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALN  304 (318)
T ss_dssp             SCCBCHHHHHHHHHCCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             cccccchhhhccccCCHHHHHHHHHHCcCChhHCcCHHHHHc
Confidence                           011235788999999999999999864

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=99.67  E-value=1.3e-16  Score=83.37  Aligned_cols=84  Identities=20%  Similarity=0.365  Sum_probs=63.8

Q ss_pred             CcccCcchhccC-CCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHc--CCC----------------------
Q psy8478           2 TRWMAPECLVDG-LFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRG--GGR----------------------   56 (88)
Q Consensus         2 ~~~~~pe~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~----------------------   56 (88)
                      +.|++||.+... .++.++|+|++|++++++++ |..||.+.+..+....+..  +..                      
T Consensus       164 ~~y~~pE~~~~~~~~~~~~DiwslGv~l~el~~-G~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (286)
T d1ob3a_         164 LWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVN-GTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYE  242 (286)
T ss_dssp             CTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHH-SSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCC
T ss_pred             chhhhHHHHhCCCCCCcceeehhcCcHHHHHHH-CCCCCCCCCHHHHHHHHHHhhCCCChhhccchhhhhhccccccccc
Confidence            568999998765 56789999999999999999 9999988777666665421  000                      


Q ss_pred             --------CCCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          57 --------LNRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        57 --------~~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                              ...+..+.+++++||..+|++|||++++++
T Consensus       243 ~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~s~~ell~  280 (286)
T d1ob3a_         243 PLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALE  280 (286)
T ss_dssp             CCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             CcchhhhcccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence                    001112347899999999999999999874

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=8.3e-17  Score=84.59  Aligned_cols=85  Identities=20%  Similarity=0.312  Sum_probs=64.2

Q ss_pred             CCcccCcchhccCC-CCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcC--CCC--------------------
Q psy8478           1 MTRWMAPECLVDGL-FSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGG--GRL--------------------   57 (88)
Q Consensus         1 ~~~~~~pe~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~--------------------   57 (88)
                      ++.|++||.+.... ++.++|+||+|++++++++ |..||.+.+..+....+...  ...                    
T Consensus       165 t~~y~apE~~~~~~~~~~~~DiwSlGvily~m~~-G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (298)
T d1gz8a_         165 TLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVT-RRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSFPKW  243 (298)
T ss_dssp             CCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHH-SSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTSCCC
T ss_pred             cceeeehhhhccccCCCccccccccchhhhHHhh-CCCCCCCCCHHHHHHHHHHhcCCCchhhccccccccccccccccc
Confidence            36789999887665 4678999999999999999 99999888776666554221  000                    


Q ss_pred             ----------CCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          58 ----------NRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        58 ----------~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                                .....+.+++.+||..+|++|||++++++
T Consensus       244 ~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~t~~ell~  282 (298)
T d1gz8a_         244 ARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALA  282 (298)
T ss_dssp             CCCCHHHHSTTCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             cccchhhhccCCCHHHHHHHHHHccCChhHCcCHHHHhC
Confidence                      11122456799999999999999999865

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.66  E-value=3.3e-17  Score=86.07  Aligned_cols=85  Identities=12%  Similarity=0.107  Sum_probs=61.3

Q ss_pred             CCcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHH---H----cCC----CCCCCCCChHHHHH
Q psy8478           1 MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYV---R----GGG----RLNRPANCSHLIRS   69 (88)
Q Consensus         1 ~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i---~----~~~----~~~~~~~~~~~~~~   69 (88)
                      ++.|+|||.+.+..++.++|+||+|++++++++ |..||...........+   .    ...    ....|..+.+++..
T Consensus       176 t~~y~aPE~~~~~~~~~~~DiwSlG~~l~el~t-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~li~~  254 (299)
T d1ckia_         176 TARYASINTHLGIEQSRRDDLESLGYVLMYFNL-GSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNF  254 (299)
T ss_dssp             CSSSCCHHHHTTBCCCHHHHHHHHHHHHHHHHH-SSCTTCCCC-------HHHHHHHHHHSCHHHHTTTSCHHHHHHHHH
T ss_pred             CccccCHHHHhCCCCCChhhEEecCHHHHHHHh-CCCcccccchHHHHHHHHHhhcccCCCChhHhccCCCHHHHHHHHH
Confidence            368999999988889999999999999999999 99999765443222111   1    111    11334556678888


Q ss_pred             HHhhCcccCCChhhhhh
Q psy8478          70 RNRLTENKAPSAVSKKR   86 (88)
Q Consensus        70 ~l~~~~~~rp~~~~~~~   86 (88)
                      |+..+|.+||++.++.+
T Consensus       255 cl~~~p~~RP~~~~i~~  271 (299)
T d1ckia_         255 CRSLRFDDKPDYSYLRQ  271 (299)
T ss_dssp             HHHSCTTCCCCHHHHHH
T ss_pred             HccCChhHCcCHHHHHH
Confidence            99999999999987754

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=5.3e-17  Score=87.09  Aligned_cols=85  Identities=16%  Similarity=0.259  Sum_probs=64.1

Q ss_pred             CCcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCC---------------------CCC
Q psy8478           1 MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGR---------------------LNR   59 (88)
Q Consensus         1 ~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---------------------~~~   59 (88)
                      ++.|+|||.+.+..++.++|+|++|+++++++. |..||.+.+.......+.....                     ...
T Consensus       181 t~~y~aPE~l~~~~~~~~~DiwSlG~~l~ell~-g~~pF~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (355)
T d2b1pa1         181 TRYYRAPEVILGMGYKENVDIWSVGCIMGEMVR-HKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKY  259 (355)
T ss_dssp             CCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHH-SSCSSCCSSHHHHHHHHHHHHCCCCHHHHTTSCHHHHHHHHTSCCC
T ss_pred             cccccChhhhcCCCCCCCcccccccchHHHHhh-CCCCCCCCCHHHHHHHHHHhccCCCHHHHHHhhhhHHHHhhcCccc
Confidence            357899999998889999999999999999999 9999987776555444321000                     000


Q ss_pred             ------------------------CCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          60 ------------------------PANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        60 ------------------------~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                                              ...+.+++.+||..+|++||||+++++
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~ta~elL~  310 (355)
T d2b1pa1         260 AGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQ  310 (355)
T ss_dssp             CCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             cccccccccccccccccccccccCCHHHHHHHHHHCcCChhHCcCHHHHhc
Confidence                                    012345788999999999999999864

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2.9e-16  Score=84.06  Aligned_cols=84  Identities=24%  Similarity=0.362  Sum_probs=63.9

Q ss_pred             CcccCcchhcc-CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHc--CC----------------C------
Q psy8478           2 TRWMAPECLVD-GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRG--GG----------------R------   56 (88)
Q Consensus         2 ~~~~~pe~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~----------------~------   56 (88)
                      +.|++||.+.. ..++.++|+|++|++++++++ |..||......+.+..+..  +.                .      
T Consensus       186 ~~y~aPE~~~~~~~~~~~~DIwSlG~il~el~~-g~~pf~~~~~~~~l~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  264 (350)
T d1q5ka_         186 RYYRAPELIFGATDYTSSIDVWSAGCVLAELLL-GQPIFPGDSGVDQLVEIIKVLGTPTREQIREMNPNYTEFKFPQIKA  264 (350)
T ss_dssp             TTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHH-TSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCC---CCCCCCCCC
T ss_pred             ccccChHHhhcccCCCcceeecccceEEEehhh-CCCCCCCCCHHHHHHHHHHHhCCChHHhhhhhccchhhcccccccc
Confidence            56899998875 468899999999999999999 9999988776666555421  00                0      


Q ss_pred             --------CCCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          57 --------LNRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        57 --------~~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                              ...+..+.+++..||..+|.+|||+.++++
T Consensus       265 ~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~  302 (350)
T d1q5ka_         265 HPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACA  302 (350)
T ss_dssp             CCGGGTSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             CchhhhcccCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence                    011223557888999999999999999864

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=5e-16  Score=82.95  Aligned_cols=85  Identities=18%  Similarity=0.344  Sum_probs=62.4

Q ss_pred             CCcccCcchhccC-CCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHc--CCC---------------------
Q psy8478           1 MTRWMAPECLVDG-LFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRG--GGR---------------------   56 (88)
Q Consensus         1 ~~~~~~pe~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~---------------------   56 (88)
                      ++.|++||.+.+. .++.++|+||+|++++++++ |..||.+.+.......+..  +..                     
T Consensus       181 t~~y~aPE~~~~~~~~~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (346)
T d1cm8a_         181 TRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMIT-GKTLFKGSDHLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLP  259 (346)
T ss_dssp             CGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHH-SSCSSCCSSHHHHHHHHHHHHCCCCHHHHHTCSCHHHHHHHHHSC
T ss_pred             cccccCHHHHcCCCCCCccchhhcchHHHHHHHH-CcCCCCCCChHHHHHHHHhccCCCcHHHHhhhcchhhhhhhccCC
Confidence            3578999998764 56789999999999999999 9999987776555443321  000                     


Q ss_pred             ----C-------CCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          57 ----L-------NRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        57 ----~-------~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                          .       ..+..+.+++.+||..+|.+|||++++++
T Consensus       260 ~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~eiL~  300 (346)
T d1cm8a_         260 ELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALA  300 (346)
T ss_dssp             CCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             cccccchHHhccCCCHHHHHHHHHHCcCChhHCcCHHHHhc
Confidence                0       01123446888999999999999999864

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.7e-15  Score=80.99  Aligned_cols=84  Identities=19%  Similarity=0.384  Sum_probs=61.8

Q ss_pred             CcccCcchhcc-CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcC--C-----------------------
Q psy8478           2 TRWMAPECLVD-GLFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGG--G-----------------------   55 (88)
Q Consensus         2 ~~~~~pe~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~-----------------------   55 (88)
                      +.|++||.+.. ..++.++|+||+|++++++++ |..||.+....+........  .                       
T Consensus       176 ~~y~aPE~l~~~~~~~~~~DiwSlG~il~eml~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (345)
T d1pmea_         176 RWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLS-NRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPH  254 (345)
T ss_dssp             GGGCCGGGTTTBCSCSTHHHHHHHHHHHHHHHH-SSCSCCCSSHHHHHHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSCC
T ss_pred             ceechHHHhhcCCCCCchhhhhccCceehHHhh-CCCCCCCCCHHHHHHHHhhhccCCChhhhhhhhhhhhhcccccCCc
Confidence            46899999855 467889999999999999999 99999877654443332110  0                       


Q ss_pred             --CC-------CCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          56 --RL-------NRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        56 --~~-------~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                        ..       .....+.+++.+||..+|.+|||++++++
T Consensus       255 ~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~ta~e~L~  294 (345)
T d1pmea_         255 KNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALA  294 (345)
T ss_dssp             CCCCCHHHHCTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             cCCCCHHHhCCCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence              00       11123557899999999999999999875

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=2.8e-15  Score=80.02  Aligned_cols=84  Identities=18%  Similarity=0.362  Sum_probs=63.3

Q ss_pred             CcccCcchhccC-CCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCC------------------------
Q psy8478           2 TRWMAPECLVDG-LFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLHYVRGGGR------------------------   56 (88)
Q Consensus         2 ~~~~~pe~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------------------------   56 (88)
                      +.|++||..... .++.++|+|++|++++++++ |..||.+.+.......+.....                        
T Consensus       182 ~~y~apE~~~~~~~~~~~~DiwSlGv~l~~ll~-g~~pF~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (348)
T d2gfsa1         182 RWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLT-GRTLFPGTDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQ  260 (348)
T ss_dssp             HHTSCHHHHTTCSCCCTTHHHHHHHHHHHHHHH-SSCSCCCSSHHHHHHHHHHHHCCCCHHHHTTCCCHHHHHHHTTSCC
T ss_pred             ccccCchhhcCCccCCcccchhhhhHHHHHHHh-CCCCCCCCCHHHHHHHHHHhcCCCChHHhhhccchhhhhhhhhccc
Confidence            358899987665 45789999999999999999 9999988776666555432110                        


Q ss_pred             ----------CCCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          57 ----------LNRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        57 ----------~~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                                ...+..+.+++..||..+|.+|||++++++
T Consensus       261 ~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~elL~  300 (348)
T d2gfsa1         261 MPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALA  300 (348)
T ss_dssp             CCCCCHHHHSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             CCCcchhhhcCCCCHHHHHHHHHHCcCChhhCcCHHHHhc
Confidence                      011223457889999999999999999865

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.53  E-value=7.5e-15  Score=76.97  Aligned_cols=85  Identities=14%  Similarity=0.167  Sum_probs=60.7

Q ss_pred             CCcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCC---HHHHHHHHHc----CCC----CCCCCCChHHHHH
Q psy8478           1 MTRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPART---NVDVLHYVRG----GGR----LNRPANCSHLIRS   69 (88)
Q Consensus         1 ~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~----~~~----~~~~~~~~~~~~~   69 (88)
                      ++.|+|||.+.+..++.++|+||+|++++++++ |..||.+..   ..+....+..    ...    ...|..+..++..
T Consensus       176 T~~y~aPE~~~~~~~~~~~DiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~p~~l~~ii~~  254 (293)
T d1csna_         176 TARYMSINTHLGREQSRRDDLEALGHVFMYFLR-GSLPWQGLKAATNKQKYERIGEKKQSTPLRELCAGFPEEFYKYMHY  254 (293)
T ss_dssp             CTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHH-SSCTTSSCCSCCHHHHHHHHHHHHHHSCHHHHTTTSCHHHHHHHHH
T ss_pred             chhhcCHHHhcCCCCChHHHHHHhhHHHHHHHh-CCCcCCCccchhHHHHHHHHHhccCCCChHHhcCCCCHHHHHHHHH
Confidence            468999999998889999999999999999999 999997543   2222222221    111    1234445556666


Q ss_pred             HHhhCcccCCChhhhhh
Q psy8478          70 RNRLTENKAPSAVSKKR   86 (88)
Q Consensus        70 ~l~~~~~~rp~~~~~~~   86 (88)
                      |+..++..||+.+.+.+
T Consensus       255 ~~~~~~~~rP~y~~l~~  271 (293)
T d1csna_         255 ARNLAFDATPDYDYLQG  271 (293)
T ss_dssp             HHHCCTTCCCCHHHHHH
T ss_pred             HhcCCcccCcCHHHHHH
Confidence            77788999999877654

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=4.9e-15  Score=78.62  Aligned_cols=83  Identities=22%  Similarity=0.363  Sum_probs=57.6

Q ss_pred             CcccCcchhccC--CCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHH----HHHcCCCCCCCC----CChHHHHHHH
Q psy8478           2 TRWMAPECLVDG--LFSSQSDVWAFGVLLWEIMSLGQQPYPARTNVDVLH----YVRGGGRLNRPA----NCSHLIRSRN   71 (88)
Q Consensus         2 ~~~~~pe~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~i~~~~~~~~~~----~~~~~~~~~l   71 (88)
                      +.|++||.+...  .++.++|+||+|++++++++ |..||.+....+...    ..... .++.|.    .+.+++.+|+
T Consensus       194 ~~~~~pe~~~~~~~~~~~ksDIWSlG~iLyellt-G~~PF~~~~~~~~~~~i~~~~~~~-~~~~~~~~s~~~~~li~~~l  271 (322)
T d1vzoa_         194 IEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLT-GASPFTVDGEKNSQAEISRRILKS-EPPYPQEMSALAKDLIQRLL  271 (322)
T ss_dssp             CTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHH-SSCTTSCTTSCCCHHHHHHHHHHC-CCCCCTTSCHHHHHHHHHHT
T ss_pred             cccchhHHhhcCCcCCCchhhhHHHHHHHHHHHh-CCCCCCCCCHHHHHHHHHHhcccC-CCCCcccCCHHHHHHHHHHc
Confidence            568899988754  46778999999999999999 999997654332222    22222 233333    4556888888


Q ss_pred             hhCcccCCC-----hhhhhh
Q psy8478          72 RLTENKAPS-----AVSKKR   86 (88)
Q Consensus        72 ~~~~~~rp~-----~~~~~~   86 (88)
                      ..+|.+||+     ++++++
T Consensus       272 ~~dP~~R~s~~~~t~~eil~  291 (322)
T d1vzoa_         272 MKDPKKRLGCGPRDADEIKE  291 (322)
T ss_dssp             CSSGGGSTTSSTTTHHHHHT
T ss_pred             ccCHHHcCCCCcccHHHHHc
Confidence            999999995     677653

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.1e-14  Score=76.76  Aligned_cols=85  Identities=24%  Similarity=0.319  Sum_probs=55.6

Q ss_pred             CCcccCcchhccCC------CCchhhHHHHHHHHHHHHhcCCCCCCC---------------CCHHHHHHHHHc-CCCCC
Q psy8478           1 MTRWMAPECLVDGL------FSSQSDVWAFGVLLWEIMSLGQQPYPA---------------RTNVDVLHYVRG-GGRLN   58 (88)
Q Consensus         1 ~~~~~~pe~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~i~~-~~~~~   58 (88)
                      ++.|+|||.+.+..      ++.++|+|++|++++++++ |..|+..               .........+.. +.++.
T Consensus       175 t~~y~aPE~~~~~~~~~~~~~~~k~Di~S~Gvvl~el~t-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  253 (303)
T d1vjya_         175 TKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIAR-RCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPN  253 (303)
T ss_dssp             CGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHH-TBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCC
T ss_pred             ccCcCChhhccccccccCCCcCcchhhhhhHHHHHHHhh-CCCCCCcccccccchhhcccccchHHHHHHHHhccccCCC
Confidence            36899999987532      4568999999999999998 7665421               112333333332 22333


Q ss_pred             CCCC---------ChHHHHHHHhhCcccCCChhhhhh
Q psy8478          59 RPAN---------CSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        59 ~~~~---------~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                      .+..         +.+++.+|+..+|.+|||+.++.+
T Consensus       254 ~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~ei~~  290 (303)
T d1vjya_         254 IPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKK  290 (303)
T ss_dssp             CCGGGGGCHHHHHHHHHHHTTCCSSGGGSCCHHHHHH
T ss_pred             CCcccCChHHHHHHHHHHHHHcccCHhHCcCHHHHHH
Confidence            3332         334566677778999999999865

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=4e-14  Score=73.89  Aligned_cols=84  Identities=20%  Similarity=0.315  Sum_probs=58.2

Q ss_pred             CcccCcchhccCC-CCchhhHHHHHHHHHHHHhcCCCCC-CCCCHHHHHHHHHc--CCCC--------------------
Q psy8478           2 TRWMAPECLVDGL-FSSQSDVWAFGVLLWEIMSLGQQPY-PARTNVDVLHYVRG--GGRL--------------------   57 (88)
Q Consensus         2 ~~~~~pe~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~--~~~~--------------------   57 (88)
                      +.|.+||.+.... ++.++|+||+|++++++++ |..|| .+.+..+....+..  +...                    
T Consensus       165 ~~~~~pe~~~~~~~~~~~~DiwSlG~il~ell~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (292)
T d1unla_         165 LWYRPPDVLFGAKLYSTSIDMWSAGCIFAELAN-AGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYP  243 (292)
T ss_dssp             GGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTT-TSCCSCCCSSHHHHHHHHHHHHCCCCTTTCTTGGGSTTCCCCCCCC
T ss_pred             cchhhhhHhccCCCCCchhhccccchHHHHHhh-CCCCCCCCCCHHHHHHHHHhhcCCCChhhhhhhhhccccccccccc
Confidence            3567888877654 6789999999999999999 77665 45555555554421  1000                    


Q ss_pred             ------CC----CCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          58 ------NR----PANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        58 ------~~----~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                            ..    ...+.+++..||+.+|.+||||+++++
T Consensus       244 ~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~sa~e~L~  282 (292)
T d1unla_         244 ATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQ  282 (292)
T ss_dssp             TTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             ccchhhhccccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence                  00    112346788999999999999999865

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=99.46  E-value=5.1e-14  Score=74.68  Aligned_cols=84  Identities=18%  Similarity=0.273  Sum_probs=58.7

Q ss_pred             CcccCcchhccC-CCCchhhHHHHHHHHHHHHhcCCCCCCCCC-HHHHHHHHHc--------------CCC---------
Q psy8478           2 TRWMAPECLVDG-LFSSQSDVWAFGVLLWEIMSLGQQPYPART-NVDVLHYVRG--------------GGR---------   56 (88)
Q Consensus         2 ~~~~~pe~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~--------------~~~---------   56 (88)
                      +.|++||.+... .++.++|+|++|+++++++. |..||.... .......+..              ...         
T Consensus       193 ~~y~aPE~~~~~~~~~~~~DiwslG~~l~e~~~-g~~pf~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~  271 (328)
T d3bqca1         193 RYFKGPELLVDYQMYDYSLDMWSLGCMLASMIF-RKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDIL  271 (328)
T ss_dssp             GGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHH-TCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTCCCCGGGGGTC
T ss_pred             ccccCcccccCCCCCCcccchhhhhhhhHHhcc-CCCCCCCCchhHHHHHHHHHHHCCchhhhhhhhcccccCcccchhc
Confidence            568999998765 57889999999999999999 888886543 2222211100              000         


Q ss_pred             -----------------CCCCCCChHHHHHHHhhCcccCCChhhhhh
Q psy8478          57 -----------------LNRPANCSHLIRSRNRLTENKAPSAVSKKR   86 (88)
Q Consensus        57 -----------------~~~~~~~~~~~~~~l~~~~~~rp~~~~~~~   86 (88)
                                       ...+..+.+++.+||..+|.+|||++++++
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~e~L~  318 (328)
T d3bqca1         272 GRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAME  318 (328)
T ss_dssp             CCCCCCCGGGGCCTTTGGGCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             ccccccchhhcccccccccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence                             001122456889999999999999999875

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.45  E-value=1e-14  Score=78.11  Aligned_cols=39  Identities=21%  Similarity=0.624  Sum_probs=34.6

Q ss_pred             CcccCcchhccCCCCchhhHHHHHHHHHHHHhcCCCCCCC
Q psy8478           2 TRWMAPECLVDGLFSSQSDVWAFGVLLWEIMSLGQQPYPA   41 (88)
Q Consensus         2 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   41 (88)
                      +.|++||.+....++.++|+|++|++++++++ |..||..
T Consensus       193 ~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pF~~  231 (362)
T d1q8ya_         193 REYRSPEVLLGAPWGCGADIWSTACLIFELIT-GDFLFEP  231 (362)
T ss_dssp             GGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHH-SSCCC--
T ss_pred             ccccChhhccccCCCccccccchHHHHHHHHH-CCCCCCC
Confidence            57999999998889999999999999999999 9999864